Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 117 of 255
Found at i:37478605 original size:243 final size:239
Alignment explanation
Indices: 37478181--37478982 Score: 1266
Period size: 243 Copynumber: 3.3 Consensus size: 239
37478171 CCCTTCGGGA
* * * * * * * * *
37478181 CTTATCATATTTATACACTTTCACATCCATCACGTTGGCCACTAGGCCCTGTCACATATATCCAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* * * *
37478246 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACCTTCACATTCATCACATC
66 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATC
* *
37478311 AGCCATTAGACCTTATCACATATATATATACACTTTCACATTCATCACATTGGCCACTCGGCCCT
131 GGCCATTAGGCCTTATCACATATATATATACACTTTCACATTCATCACATTGGCCACTCGGCCCT
* *
37478376 ATCACATATATGCACTTTCACATTCATCTCATCGGCTATTAGGC
196 ATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
37478420 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC----ATATAT
37478485 ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCA
62 ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCA
*
37478550 CATCGGCCATTAGGCCTTATCACATATATATATACACTTTCACATTCATCACATTGGCTACTCGG
127 CATCGGCCATTAGGCCTTATCACATATATATATACACTTTCACATTCATCACATTGGCCACTCGG
*
37478615 CCCTGTCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
192 CCCTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
37478663 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC----ATATAT
37478728 ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCA
62 ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCA
* *
37478793 CATCGGCCATTAGGCCTTATCAC--ATATATATACACTTTCACATTCATCACATTGGCCATTTGG
127 CATCGGCCATTAGGCCTTATCACATATATATATACACTTTCACATTCATCACATTGGCCACTCGG
* * *
37478856 CCTTATCACATATATACATTTTCACATTCATCACATCGGCCATTAGGC
192 CCCTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
37478904 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
37478969 ACTTTCACATTCAT
64 ACTTTCACATTCAT
37478983 TCAAATATAC
Statistics
Matches: 529, Mismatches: 28, Indels: 12
0.93 0.05 0.02
Matches are distributed among these distances:
239 69 0.13
241 89 0.17
243 371 0.70
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (239 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATATATACACTTTCACATTCATCACATTGGCCACTCGGCCCT
ATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
Found at i:37480387 original size:85 final size:85
Alignment explanation
Indices: 37480258--37480436 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
37480248 TATTTTATTG
*
37480258 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
37480323 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
37480343 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
37480408 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
37480428 CCCATGCTC
1 CCCATGCTC
37480437 ATGGCTGACC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:37484494 original size:29 final size:29
Alignment explanation
Indices: 37484461--37484523 Score: 110
Period size: 29 Copynumber: 2.2 Consensus size: 29
37484451 CAGTTGTATA
37484461 CGAAATTTAG-AAATTGTGAGTTCTGGTTG
1 CGAAATTTAGTAAA-TGTGAGTTCTGGTTG
37484490 CGAAATTTAGTAAATGTGAGTTCTGGTTG
1 CGAAATTTAGTAAATGTGAGTTCTGGTTG
37484519 CGAAA
1 CGAAA
37484524 AGTTGGTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 30 0.91
30 3 0.09
ACGTcount: A:0.30, C:0.08, G:0.27, T:0.35
Consensus pattern (29 bp):
CGAAATTTAGTAAATGTGAGTTCTGGTTG
Found at i:37491615 original size:56 final size:56
Alignment explanation
Indices: 37491529--37491648 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
37491519 ACAAGGGATG
37491529 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
37491585 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
37491641 ATGGGCAA
1 ATGGGCAA
37491649 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:37493003 original size:40 final size:40
Alignment explanation
Indices: 37492772--37492996 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
37492762 TCGAATGATG
* * * * *
37492772 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * * *
37492812 TCCGGACTAAGAT-CCGAAGGCATTTGTGTGAGATACTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
37492852 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
37492891 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
37492931 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
37492972 -CCGGGTTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
37492997 AACGAGTATC
Statistics
Matches: 164, Mismatches: 16, Indels: 10
0.86 0.08 0.05
Matches are distributed among these distances:
39 33 0.20
40 122 0.74
41 9 0.05
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:37512992 original size:5 final size:5
Alignment explanation
Indices: 37512982--37513008 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
37512972 AAACTACTAT
37512982 AAATA AAATA AAATA AAATA AAATA AA
1 AAATA AAATA AAATA AAATA AAATA AA
37513009 GATGAATAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAATA
Found at i:37519399 original size:56 final size:56
Alignment explanation
Indices: 37519313--37519431 Score: 220
Period size: 56 Copynumber: 2.1 Consensus size: 56
37519303 CAAGGGATGG
37519313 TGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCA
1 TGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCA
**
37519369 TGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAGGAATAAAATAAGAAGCA
1 TGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCA
37519425 TGGGCAA
1 TGGGCAA
37519432 TAAACTAATA
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 61 1.00
ACGTcount: A:0.44, C:0.09, G:0.24, T:0.23
Consensus pattern (56 bp):
TGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCA
Found at i:37520641 original size:40 final size:40
Alignment explanation
Indices: 37520557--37520780 Score: 285
Period size: 40 Copynumber: 5.6 Consensus size: 40
37520547 TCGAATGATG
* * *
37520557 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
37520597 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
37520637 TCCGGGCAAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
37520676 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
37520716 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
37520757 -CCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTT
37520781 TAACGAGTAG
Statistics
Matches: 162, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
39 33 0.20
40 119 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:37520804 original size:119 final size:119
Alignment explanation
Indices: 37520557--37520779 Score: 281
Period size: 119 Copynumber: 1.9 Consensus size: 119
37520547 TCGAATGATG
* *
37520557 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
* *
37520622 GTGCGAGATACTAATTCCGGGCAAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCAAAGCCCGAAGGCATTGGTACGAGTTACTAAA
* * **
37520676 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
37520739 TTGTGCGAGTTA-TTATAACCGGGCTATGTCCCGAAGGCATT
64 TTGTGCGAGATACTAAT-ACCGGGCAAAG-CCCGAAGGCATT
37520780 TTAACGAGTA
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 4 0.04
119 66 0.74
120 19 0.21
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCAAAGCCCGAAGGCATTGGTACGAGTTACTAAA
Found at i:37527328 original size:56 final size:56
Alignment explanation
Indices: 37527242--37527361 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
37527232 ACAAGGGATG
37527242 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
37527298 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
37527354 ATGGGCAA
1 ATGGGCAA
37527362 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:37528722 original size:40 final size:40
Alignment explanation
Indices: 37528484--37528708 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
37528474 TCGAATGATG
* * * *
37528484 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
37528524 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
37528564 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
37528603 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
37528643 TCCGGGTTAAGTCCCGAAGGAATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
37528684 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
37528709 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
39 34 0.21
40 119 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:37542537 original size:40 final size:40
Alignment explanation
Indices: 37542456--37542673 Score: 305
Period size: 40 Copynumber: 5.5 Consensus size: 40
37542446 CAACCAAGTA
** * *
37542456 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGAAATAG-TAACTCGCACAAATG
** *
37542495 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
* *
37542535 CCTTCGGGACTTAGCCCGGAAATAGCAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
**
37542575 CCTTCGGGACTTAGCTTGGAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
*
37542615 CCTTCGGGACTTAGCCCAGAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
37542655 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
37542674 TTATCATCCG
Statistics
Matches: 159, Mismatches: 18, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 13 0.08
40 146 0.92
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
Found at i:37548659 original size:38 final size:38
Alignment explanation
Indices: 37548616--37548729 Score: 228
Period size: 38 Copynumber: 3.0 Consensus size: 38
37548606 TTCATCCTTT
37548616 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
37548654 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
37548692 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
37548730 GGAGTTCTTG
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 76 1.00
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.32
Consensus pattern (38 bp):
TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
Found at i:37550016 original size:40 final size:40
Alignment explanation
Indices: 37549924--37550066 Score: 180
Period size: 40 Copynumber: 3.5 Consensus size: 40
37549914 CTCGAATGAT
*
37549924 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACTAC
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACTAC
* *
37549965 ATCCGGACTAAGAT-CCGAAGGCATTTGTGGTAGCGACTAC
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACTAC
* * * *
37550005 ATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACTAC
* *
37550045 ATCCGGGTTAAGACCCGAAGGC
1 ATCCGGGCTAAGTCCCGAAGGC
37550067 CTTGTGCGAG
Statistics
Matches: 89, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 61 0.69
41 26 0.29
42 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACTAC
Found at i:37554043 original size:40 final size:40
Alignment explanation
Indices: 37553983--37554190 Score: 312
Period size: 40 Copynumber: 5.2 Consensus size: 40
37553973 CCTTTGGGGT
* *
37553983 TTAG-CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGAAATAG-TAACTCGCACAAATGCCTTCGGGAC
** * *
37554022 TTAGCCCGGTTATAGTAACTCGCACAATTACCTTCGGGAC
1 TTAGCCCGGAAATAGTAACTCGCACAAATGCCTTCGGGAC
* *
37554062 TTAGCCCGGAAATAGCAACTCGCACAAATGCCTTCGGGAT
1 TTAGCCCGGAAATAGTAACTCGCACAAATGCCTTCGGGAC
37554102 TTAGCCCGGAAATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGAAATAGTAACTCGCACAAATGCCTTCGGGAC
*
37554142 TTAGCCCAGAAATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGAAATAGTAACTCGCACAAATGCCTTCGGGAC
37554182 TTAGCCCGG
1 TTAGCCCGG
37554191 TTATCATCCG
Statistics
Matches: 153, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 5 0.03
40 148 0.97
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGAAATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:37558913 original size:40 final size:40
Alignment explanation
Indices: 37558858--37559079 Score: 313
Period size: 40 Copynumber: 5.6 Consensus size: 40
37558848 TATTCGAATG
* *
37558858 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
*
37558898 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
*
37558938 ATATCCGGGCTAAGTCCTGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* * *
37558978 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* * * *
37559018 ATATCCGGGCTAAGACCCGAAGGCATTTGCGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGATT
*
37559058 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
37559080 TACTTGGGTT
Statistics
Matches: 165, Mismatches: 16, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
39 14 0.08
40 149 0.90
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
Found at i:37562277 original size:44 final size:46
Alignment explanation
Indices: 37562067--37562333 Score: 188
Period size: 47 Copynumber: 5.7 Consensus size: 46
37562057 GATTCGTGCA
* * **
37562067 CCAGTATAAGACCATGTCTGGGACATGGCATCGGCATC-CAGACGAGGG
1 CCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCACAGA-GATAG
* * * *
37562115 CTAGTGTAAGACATGTCTGGGACATGCTTCAGCCAT-ATTATGAG-T-G
1 CCAGTGTAAGACATGTCTGGGACATGCATCGGCC-TCA-CA-GAGATAG
*
37562161 CCAGAGTAAGACATGTCTGGGACATGCATCGGCCTCGACAGAGATAG
1 CCAGTGTAAGACATGTCTGGGACATGCATCGGCCTC-ACAGAGATAG
* * * *
37562208 CCAGTGTAAGACGTGTCTGGAACATGCATCGG-CT-A-AGAGTTGTG
1 CCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCACAGAGAT-AG
** * * * * *
37562252 TTAGTGTAAGACATGTCTGGGACATGCATCAGCATGCATATATGAGAG
1 CCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CACAGA-GATAG
*
37562300 CCAGTATAAGACCATGTCTGGGACATAGCATCGG
1 CCAGTGTAAGA-CATGTCTGGGACAT-GCATCGG
37562334 TAATTTATCC
Statistics
Matches: 172, Mismatches: 31, Indels: 30
0.74 0.13 0.13
Matches are distributed among these distances:
43 5 0.03
44 29 0.17
45 5 0.03
46 41 0.24
47 47 0.27
48 22 0.13
49 17 0.10
50 6 0.03
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
CCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCACAGAGATAG
Found at i:37564605 original size:28 final size:28
Alignment explanation
Indices: 37564542--37564639 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
37564532 ATATTAAGTC
* *
37564542 CGCACACTCAGTGCTATATAA-TCAACT
1 CGCACACTTAGTGCTATATAATTAAACT
37564569 CGCACACTTAGTGCTATATAATTAAACT
1 CGCACACTTAGTGCTATATAATTAAACT
* *
37564597 CGCACACTTAGTGCTGA-ACAATTTAAACC
1 CGCACACTTAGTGCT-ATATAA-TTAAACT
*
37564626 CGTACACTTAGTGC
1 CGCACACTTAGTGC
37564640 CAATCTCATG
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
27 20 0.32
28 23 0.37
29 20 0.32
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATTAAACT
Found at i:37570050 original size:21 final size:21
Alignment explanation
Indices: 37570024--37570065 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
37570014 CAATTATAAA
*
37570024 GCCAAGTCTAATAGGTACTTT
1 GCCAAGTCAAATAGGTACTTT
37570045 GCCAAGTCAAATAGGTACTTT
1 GCCAAGTCAAATAGGTACTTT
37570066 TAACATCTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (21 bp):
GCCAAGTCAAATAGGTACTTT
Found at i:37579852 original size:28 final size:28
Alignment explanation
Indices: 37579812--37579877 Score: 87
Period size: 28 Copynumber: 2.4 Consensus size: 28
37579802 GCAATCAAAT
* *
37579812 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* *
37579840 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
*
37579868 ATGACACTTA
1 ATGGCACTTA
37579878 ATATGCAAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAAATATTGAGA
Found at i:37579890 original size:28 final size:28
Alignment explanation
Indices: 37579829--37579890 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
37579819 TCAGTGTACG
* * * *
37579829 AAATATTGAGAATGGCACTTAGTGTGCG
1 AAATATTGAGAATGACACTTAATATGCA
*
37579857 AGATATTGAGAATGACACTTAATATGCA
1 AAATATTGAGAATGACACTTAATATGCA
37579885 AAATAT
1 AAATAT
37579891 CGAATGATTC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.40, C:0.10, G:0.21, T:0.29
Consensus pattern (28 bp):
AAATATTGAGAATGACACTTAATATGCA
Found at i:37581894 original size:28 final size:28
Alignment explanation
Indices: 37581863--37582074 Score: 172
Period size: 28 Copynumber: 7.5 Consensus size: 28
37581853 GTGAACATAG
*
37581863 GCACTGTGTGTGTGAGTTCCGTAACCGA
1 GCACTGTGTGTGCGAGTTCCGTAACCGA
* * ****
37581891 GCACTGTGTGTGCGAGATCGGTTGTTGA
1 GCACTGTGTGTGCGAGTTCCGTAACCGA
* *
37581919 GGCACTGTGTGTGCAAGTTCCGTAACCAA
1 -GCACTGTGTGTGCGAGTTCCGTAACCGA
* * ****
37581948 GCACTGTGTGTGCGAGATCGGTTGTTGA
1 GCACTGTGTGTGCGAGTTCCGTAACCGA
*
37581976 GGCACTCTGTGTGCGAGTTCCGTAACCGA
1 -GCACTGTGTGTGCGAGTTCCGTAACCGA
* * * ****
37582005 GCACTGTGTGTGTGAGATCGGTTGTTGA
1 GCACTGTGTGTGCGAGTTCCGTAACCGA
* *
37582033 GGCACTGTGTGTGCGAGTTCTGTAACCAA
1 -GCACTGTGTGTGCGAGTTCCGTAACCGA
37582062 GCACTGTGTGTGC
1 GCACTGTGTGTGC
37582075 AAGATCGGTT
Statistics
Matches: 135, Mismatches: 46, Indels: 6
0.72 0.25 0.03
Matches are distributed among these distances:
28 74 0.55
29 61 0.45
ACGTcount: A:0.17, C:0.19, G:0.34, T:0.29
Consensus pattern (28 bp):
GCACTGTGTGTGCGAGTTCCGTAACCGA
Found at i:37581930 original size:29 final size:29
Alignment explanation
Indices: 37581891--37582049 Score: 160
Period size: 29 Copynumber: 5.6 Consensus size: 29
37581881 CCGTAACCGA
37581891 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* * * **** *
37581920 GCACTGTGTGTGCAAGTTCCG-TAACCAA
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
37581948 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* * * ****
37581977 GCACTCTGTGTGCGAGTTCCGTAACCGA-
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
*
37582005 GCACTGTGTGTGTGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
37582034 GCACTGTGTGTGCGAG
1 GCACTGTGTGTGCGAG
37582050 TTCTGTAACC
Statistics
Matches: 96, Mismatches: 32, Indels: 4
0.73 0.24 0.03
Matches are distributed among these distances:
28 40 0.42
29 56 0.58
ACGTcount: A:0.16, C:0.18, G:0.36, T:0.29
Consensus pattern (29 bp):
GCACTGTGTGTGCGAGATCGGTTGTTGAG
Found at i:37582102 original size:57 final size:57
Alignment explanation
Indices: 37581861--37582088 Score: 384
Period size: 57 Copynumber: 4.0 Consensus size: 57
37581851 AAGTGAACAT
* *
37581861 AGGCACTGTGTGTGTGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
*
37581918 AGGCACTGTGTGTGCAAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
* * *
37581975 AGGCACTCTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGTGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
* *
37582032 AGGCACTGTGTGTGCGAGTTCTGTAACCAAGCACTGTGTGTGCAAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
37582089 GGGAACTAAG
Statistics
Matches: 159, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
57 159 1.00
ACGTcount: A:0.18, C:0.18, G:0.35, T:0.29
Consensus pattern (57 bp):
AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
Found at i:37596719 original size:45 final size:45
Alignment explanation
Indices: 37596578--37596784 Score: 215
Period size: 45 Copynumber: 4.6 Consensus size: 45
37596568 AATCACAAAC
** * * *
37596578 CTTATCTCCCTG-AGTTGCAGTGGAGCAGGTTG-AGTTACAAAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGAAAAT
* * *
37596621 C-TATCTCCCTGAAGTAGCAGTGGAGCACACTGAA-ATAGAGAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGAAAAT
*
37596664 CTTATCTCCCTGAAGTTGCAGTAGAGCAGACTGAAGATAGAAAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGAAAAT
* * * * *
37596709 CTTGTCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGCTAAATGACAAAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG--ATA-GA-AAAT
*
37596758 CTTGTCTCCCTGAAGTTGCAGTGGAGC
1 CTTATCTCCCTGAAGTTGCAGTGGAGC
37596785 CAGTTGAAGT
Statistics
Matches: 137, Mismatches: 19, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
42 10 0.07
43 23 0.17
44 31 0.23
45 40 0.29
47 2 0.01
48 2 0.01
49 29 0.21
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (45 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGAAAAT
Found at i:37596775 original size:49 final size:48
Alignment explanation
Indices: 37596532--37596794 Score: 205
Period size: 45 Copynumber: 5.7 Consensus size: 48
37596522 ACCAATTCAC
** *
37596532 CTCCCTGAAGTTGCAGTGGAATAGATTGAAGCTACAAATCACAAACCTTAT
1 CTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-T--AAATGACAAACCTTAT
* *
37596583 CTCCCTG-AGTTGCAGTGGAGCAGGTTG-AGT---T-ACAAA-GTCTAT
1 CTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTAAATGACAAACCT-TAT
* * * * * *
37596625 CTCCCTGAAGTAGCAGTGGAGCACACTGAA--ATA-GA-GAATCTTAT
1 CTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTAAATGACAAACCTTAT
* * * * *
37596669 CTCCCTGAAGTTGCAGTAGAGCAGACTGAAG-ATA-GA-AAATCTTGT
1 CTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTAAATGACAAACCTTAT
* *
37596714 CTCCCTGAAGTTGCAGTGGAGTAGATTGAAGCTAAATGACAAACCTTGT
1 CTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-TAAATGACAAACCTTAT
37596763 CTCCCTGAAGTTGCAGTGGAGCCAG-TTGAAGT
1 CTCCCTGAAGTTGCAGTGGAG-CAGATTGAAGT
37596795 GTTACAATGG
Statistics
Matches: 177, Mismatches: 21, Indels: 31
0.77 0.09 0.14
Matches are distributed among these distances:
41 1 0.01
42 15 0.08
43 17 0.10
44 33 0.19
45 42 0.24
47 2 0.01
48 4 0.02
49 37 0.21
50 19 0.11
51 7 0.04
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.25
Consensus pattern (48 bp):
CTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTAAATGACAAACCTTAT
Found at i:37598716 original size:24 final size:24
Alignment explanation
Indices: 37598671--37598717 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
37598661 TTTTTCCTCA
37598671 TATTATTATTTTAAATTGTTTCAT
1 TATTATTATTTTAAATTGTTTCAT
*
37598695 TATTACTTATTTTAAGTT-TTTCA
1 TATTA-TTATTTTAAATTGTTTCA
37598718 CCTATTAGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 10 0.48
25 11 0.52
ACGTcount: A:0.28, C:0.06, G:0.04, T:0.62
Consensus pattern (24 bp):
TATTATTATTTTAAATTGTTTCAT
Found at i:37598723 original size:25 final size:24
Alignment explanation
Indices: 37598671--37598724 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
37598661 TTTTTCCTCA
*
37598671 TATTATTATTTTAAATTGTTTCAT
1 TATTATTATTTTAAATTGTTTCAC
*
37598695 TATTACTTATTTTAAGTT-TTTCACC
1 TATTA-TTATTTTAAATTGTTTCA-C
37598720 TATTA
1 TATTA
37598725 GGTGTTTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 10 0.38
25 16 0.62
ACGTcount: A:0.28, C:0.09, G:0.04, T:0.59
Consensus pattern (24 bp):
TATTATTATTTTAAATTGTTTCAC
Found at i:37604150 original size:50 final size:51
Alignment explanation
Indices: 37604045--37604151 Score: 130
Period size: 49 Copynumber: 2.1 Consensus size: 51
37604035 TCATTTTTAT
* * * *
37604045 TTTTCATTTTGGAGAACACCACATTCATTTTCAAATGATTTCATTTCTCTA
1 TTTTCATTTTGGAGAAAACCACAATCATTTCCAAATGATTTCATTTCTCCA
* *
37604096 -TTTCATTTTGGA-AAAACCATAATCA-TTCCAAATGTTTTTCATTTCTCCA
1 TTTTCATTTTGGAGAAAACCACAATCATTTCCAAATG-ATTTCATTTCTCCA
37604145 TTTTCAT
1 TTTTCAT
37604152 CCTTTCTATT
Statistics
Matches: 48, Mismatches: 6, Indels: 5
0.81 0.10 0.08
Matches are distributed among these distances:
48 8 0.17
49 22 0.46
50 18 0.38
ACGTcount: A:0.28, C:0.20, G:0.07, T:0.46
Consensus pattern (51 bp):
TTTTCATTTTGGAGAAAACCACAATCATTTCCAAATGATTTCATTTCTCCA
Found at i:37606090 original size:17 final size:19
Alignment explanation
Indices: 37606034--37606085 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
37606024 ATAATTATAA
*
37606034 AAAAAATCAAAATAAGTTT-T
1 AAAAATTCAAAAT-A-TTTAT
37606054 AAAAATTCAAAATATTTAT
1 AAAAATTCAAAATATTTAT
37606073 AAAAATTCAAAAT
1 AAAAATTCAAAAT
37606086 TTATATTTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 3 0.10
19 15 0.50
20 12 0.40
ACGTcount: A:0.62, C:0.06, G:0.02, T:0.31
Consensus pattern (19 bp):
AAAAATTCAAAATATTTAT
Found at i:37606104 original size:9 final size:9
Alignment explanation
Indices: 37606090--37606150 Score: 52
Period size: 9 Copynumber: 6.6 Consensus size: 9
37606080 CAAAATTTAT
37606090 ATTTTAAAA
1 ATTTTAAAA
37606099 ATTTTAAAA
1 ATTTTAAAA
*
37606108 ATTCTAAAA
1 ATTTTAAAA
*
37606117 ATATATAAAACA
1 AT-T-TTAAA-A
**
37606129 AAGTTAAAA
1 ATTTTAAAA
37606138 A-TTTAAAA
1 ATTTTAAAA
37606146 ATTTT
1 ATTTT
37606151 CTAAAATAAT
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
8 7 0.17
9 24 0.59
10 5 0.12
11 3 0.07
12 2 0.05
ACGTcount: A:0.57, C:0.03, G:0.02, T:0.38
Consensus pattern (9 bp):
ATTTTAAAA
Found at i:37606108 original size:24 final size:23
Alignment explanation
Indices: 37606065--37606110 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
37606055 AAAATTCAAA
*
37606065 ATATTTATAAAAATTCAAAATTT
1 ATATTTATAAAAATTAAAAATTT
37606088 ATATTT-TAAAAATTTTAAAAATT
1 ATATTTATAAAAA--TTAAAAATT
37606111 CTAAAAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 6 0.30
23 6 0.30
24 8 0.40
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (23 bp):
ATATTTATAAAAATTAAAAATTT
Found at i:37610869 original size:17 final size:17
Alignment explanation
Indices: 37610845--37610883 Score: 62
Period size: 17 Copynumber: 2.3 Consensus size: 17
37610835 TTAGTATTAT
37610845 TTTATAATAAAT-TAAA
1 TTTATAATAAATATAAA
37610861 TTTAGTAATAAATATAAA
1 TTTA-TAATAAATATAAA
37610879 TTTAT
1 TTTAT
37610884 TAACATTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.19
17 9 0.43
18 8 0.38
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (17 bp):
TTTATAATAAATATAAA
Found at i:37611158 original size:37 final size:39
Alignment explanation
Indices: 37611114--37611287 Score: 110
Period size: 41 Copynumber: 4.4 Consensus size: 39
37611104 TTTTAAAATT
37611114 CAGAGCAATAGC-GCGTTCTA-AAAAAA-GCCGCTAAAAA
1 CAGAGCAATAGCGGC-TTCTAGAAAAAACGCCGCTAAAAA
* * *
37611151 CAGAGCAACAGCGGCTTTTAGTAAAAAACGCCGCTAAAAG
1 CAGAGCAATAGCGGCTTCTAG-AAAAAACGCCGCTAAAAA
* * *
37611191 CAGAGCATTAGCGGCGCTTTCT-G-TAAAACGCCGCTAAAAGC
1 CAGAGCAATAGC-G-GC-TTCTAGAAAAAACGCCGCTAAAA-A
* * * *
37611232 CAAAGCATTAGCGGCGCTTTCT-G-TAAAACGCCGCTAAAAGC
1 CAGAGCAATAGC-G-GC-TTCTAGAAAAAACGCCGCTAAAA-A
*
37611273 CAGAGCATTAGCGGC
1 CAGAGCAATAGCGGC
37611288 GCTTTCAGTA
Statistics
Matches: 119, Mismatches: 10, Indels: 14
0.83 0.07 0.10
Matches are distributed among these distances:
37 15 0.13
38 2 0.02
39 8 0.07
40 36 0.30
41 52 0.44
42 3 0.03
43 3 0.03
ACGTcount: A:0.36, C:0.25, G:0.23, T:0.17
Consensus pattern (39 bp):
CAGAGCAATAGCGGCTTCTAGAAAAAACGCCGCTAAAAA
Found at i:37611204 original size:40 final size:41
Alignment explanation
Indices: 37611135--37611391 Score: 316
Period size: 40 Copynumber: 6.4 Consensus size: 41
37611125 CGCGTTCTAA
* * **
37611135 AAAAAGCCGCTAAAA-ACAGAGCAACAGC-G-GCTTTTAGT
1 AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTTAGT
37611173 AAAAAACGCCGCTAAAAG-CAGAGCATTAGCGGCGCTTTCT-GT
1 --AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTT-TAGT
*
37611215 AAAACGCCGCTAAAAGCCAAAGCATTAGCGGCGCTTTCT-GT
1 AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTT-TAGT
*
37611256 AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTCAGT
1 AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTTAGT
*
37611297 AAAACGCCGCTAAAAGCCAGA-CATTAGCGGCGC-GTTAGGT
1 AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTTA-GT
* **
37611337 AAAACGCCGCTAAAAGCCAGAGCATTAGCGAC-CTTTCGGT
1 AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTTAGT
37611377 AAAACGCCGCTAAAA
1 AAAACGCCGCTAAAA
37611392 ATCTCATAAC
Statistics
Matches: 196, Mismatches: 12, Indels: 18
0.87 0.05 0.08
Matches are distributed among these distances:
39 2 0.01
40 93 0.47
41 93 0.47
42 7 0.04
43 1 0.01
ACGTcount: A:0.35, C:0.25, G:0.23, T:0.17
Consensus pattern (41 bp):
AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTTAGT
Found at i:37611251 original size:41 final size:41
Alignment explanation
Indices: 37611175--37611391 Score: 350
Period size: 41 Copynumber: 5.4 Consensus size: 41
37611165 CTTTTAGTAA
*
37611175 AAAACGCCGCTAAAAG-CAGAGCATTAGCGGCGCTTTCTGT
1 AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTCGGT
* *
37611215 AAAACGCCGCTAAAAGCCAAAGCATTAGCGGCGCTTTCTGT
1 AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTCGGT
*
37611256 AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTCAGT
1 AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTCGGT
* *
37611297 AAAACGCCGCTAAAAGCCAGA-CATTAGCGGCGCGTTAGGT
1 AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTCGGT
*
37611337 AAAACGCCGCTAAAAGCCAGAGCATTAGCGAC-CTTTCGGT
1 AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTCGGT
37611377 AAAACGCCGCTAAAA
1 AAAACGCCGCTAAAA
37611392 ATCTCATAAC
Statistics
Matches: 166, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
40 74 0.45
41 92 0.55
ACGTcount: A:0.33, C:0.26, G:0.24, T:0.17
Consensus pattern (41 bp):
AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTCGGT
Found at i:37611261 original size:81 final size:81
Alignment explanation
Indices: 37611175--37611391 Score: 348
Period size: 81 Copynumber: 2.7 Consensus size: 81
37611165 CTTTTAGTAA
*
37611175 AAAACGCCGCTAAAAG-CAGAGCATTAGCGGCGCTTTCTGTAAAACGCCGCTAAAAGCCAAAGCA
1 AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTCAGTAAAACGCCGCTAAAAGCCAAA-CA
* **
37611239 TTAGCGGCGCTTTCTGT
65 TTAGCGGCGCGTTAGGT
*
37611256 AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTCAGTAAAACGCCGCTAAAAGCCAGACAT
1 AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTCAGTAAAACGCCGCTAAAAGCCAAACAT
37611321 TAGCGGCGCGTTAGGT
66 TAGCGGCGCGTTAGGT
* *
37611337 AAAACGCCGCTAAAAGCCAGAGCATTAGCGAC-CTTTCGGTAAAACGCCGCTAAAA
1 AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTCAGTAAAACGCCGCTAAAA
37611392 ATCTCATAAC
Statistics
Matches: 128, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
80 22 0.17
81 63 0.49
82 43 0.34
ACGTcount: A:0.33, C:0.26, G:0.24, T:0.17
Consensus pattern (81 bp):
AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTCAGTAAAACGCCGCTAAAAGCCAAACAT
TAGCGGCGCGTTAGGT
Found at i:37612415 original size:15 final size:15
Alignment explanation
Indices: 37612395--37612426 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
37612385 TTTAATTTAG
*
37612395 AAGATAAATGTATAT
1 AAGATAAATATATAT
37612410 AAGATAAATATATAT
1 AAGATAAATATATAT
37612425 AA
1 AA
37612427 AATATTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.31
Consensus pattern (15 bp):
AAGATAAATATATAT
Found at i:37612426 original size:10 final size:10
Alignment explanation
Indices: 37612413--37612458 Score: 56
Period size: 10 Copynumber: 4.3 Consensus size: 10
37612403 TGTATATAAG
37612413 ATAAATATAT
1 ATAAATATAT
37612423 ATAAAATATTAT
1 AT-AAATA-TAT
*
37612435 TTAAAATATAT
1 AT-AAATATAT
37612446 ATAAATATAT
1 ATAAATATAT
37612456 ATA
1 ATA
37612459 TGAAAAGTGG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
10 13 0.41
11 9 0.28
12 10 0.31
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (10 bp):
ATAAATATAT
Found at i:37612441 original size:12 final size:12
Alignment explanation
Indices: 37612415--37612464 Score: 52
Period size: 12 Copynumber: 4.2 Consensus size: 12
37612405 TATATAAGAT
37612415 AAATA-TATATA
1 AAATATTATATA
*
37612426 AAATATTATTTA
1 AAATATTATATA
37612438 AAATA-TATAT-
1 AAATATTATATA
37612448 AAATATATATATGA
1 AAATAT-TATAT-A
37612462 AAA
1 AAA
37612465 GTGGTTTAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
10 5 0.16
11 9 0.28
12 15 0.47
14 3 0.09
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (12 bp):
AAATATTATATA
Found at i:37616937 original size:15 final size:15
Alignment explanation
Indices: 37616893--37616948 Score: 64
Period size: 15 Copynumber: 3.8 Consensus size: 15
37616883 AACGACATGT
*
37616893 ATATTACTTAATTAAA
1 ATATTATTTAATT-AA
37616909 ATAATT-TTT-A-TAA
1 AT-ATTATTTAATTAA
37616922 ATATTATTTAATTAA
1 ATATTATTTAATTAA
37616937 ATATTATTTAAT
1 ATATTATTTAAT
37616949 CCCGCTACTT
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
12 3 0.09
13 7 0.20
14 2 0.06
15 16 0.46
16 4 0.11
17 3 0.09
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (15 bp):
ATATTATTTAATTAA
Found at i:37617065 original size:9 final size:9
Alignment explanation
Indices: 37617053--37617322 Score: 161
Period size: 9 Copynumber: 29.6 Consensus size: 9
37617043 TATTTGATAT
*
37617053 TATAATTTA
1 TATAACTTA
37617062 TATAACTTA
1 TATAACTTA
* * *
37617071 CAAAACGTA
1 TATAACTTA
*
37617080 CATAACTTA
1 TATAACTTA
37617089 TATAACTTA
1 TATAACTTA
37617098 TATAACTTA
1 TATAACTTA
*
37617107 CATAACTTA
1 TATAACTTA
*
37617116 TATAACATA
1 TATAACTTA
37617125 TATAAC-TA
1 TATAACTTA
*
37617133 CATAACTTA
1 TATAACTTA
*
37617142 TATAACATA
1 TATAACTTA
* *
37617151 CATAGCTTA
1 TATAACTTA
37617160 TATAACTTA
1 TATAACTTA
37617169 TATAACTTA
1 TATAACTTA
* *
37617178 GATAA-ATA
1 TATAACTTA
37617186 TATAACTTA
1 TATAACTTA
* *
37617195 CATAAATTA
1 TATAACTTA
*
37617204 CATAATACTTAAA
1 TAT-A-ACTT--A
**
37617217 TATATTTTATA
1 TATA-ACT-TA
*
37617228 TCATAATTTA
1 T-ATAACTTA
*
37617238 CATAACTTA
1 TATAACTTA
*
37617247 CATAACTTA
1 TATAACTTA
37617256 TATAACTTA
1 TATAACTTA
* *
37617265 GATAA-ATA
1 TATAACTTA
*
37617273 TATAATTTA
1 TATAACTTA
* *
37617282 CATAA-ATA
1 TATAACTTA
* *
37617290 TATATCATA
1 TATAACTTA
*
37617299 TCATAAATTA
1 T-ATAACTTA
*
37617309 CATAACTTA
1 TATAACTTA
*
37617318 CATAA
1 TATAA
37617323 TACTTAAATA
Statistics
Matches: 205, Mismatches: 45, Indels: 22
0.75 0.17 0.08
Matches are distributed among these distances:
8 24 0.12
9 156 0.76
10 8 0.04
11 7 0.03
12 6 0.03
13 4 0.02
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (9 bp):
TATAACTTA
Found at i:37617084 original size:27 final size:27
Alignment explanation
Indices: 37617054--37617269 Score: 193
Period size: 27 Copynumber: 7.8 Consensus size: 27
37617044 ATTTGATATT
* * *
37617054 ATAATTTATATAACTTACAAAACGTAC
1 ATAACTTATATAACTTACATAACTTAC
*
37617081 ATAACTTATATAACTTATATAACTTAC
1 ATAACTTATATAACTTACATAACTTAC
* *
37617108 ATAACTTATATAACATATATAAC-TAC
1 ATAACTTATATAACTTACATAACTTAC
* * *
37617134 ATAACTTATATAACATACATAGCTTAT
1 ATAACTTATATAACTTACATAACTTAC
* * *
37617161 ATAACTTATATAACTTAGATAA-ATAT
1 ATAACTTATATAACTTACATAACTTAC
* * *
37617187 ATAACTTACATAAATTACATAATACTTAA
1 ATAACTTATATAACTTACAT-A-ACTTAC
* *
37617216 ATATATTTTATATCATAATTTACATAACTTAC
1 ATA-A--CT-TAT-ATAACTTACATAACTTAC
*
37617248 ATAACTTATATAACTTAGATAA
1 ATAACTTATATAACTTACATAA
37617270 ATATATAATT
Statistics
Matches: 156, Mismatches: 24, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
26 44 0.28
27 78 0.50
28 4 0.03
29 6 0.04
30 1 0.01
31 1 0.01
32 9 0.06
33 3 0.02
34 10 0.06
ACGTcount: A:0.47, C:0.13, G:0.02, T:0.38
Consensus pattern (27 bp):
ATAACTTATATAACTTACATAACTTAC
Found at i:37617147 original size:44 final size:45
Alignment explanation
Indices: 37617078--37617322 Score: 113
Period size: 44 Copynumber: 5.4 Consensus size: 45
37617068 TTACAAAACG
* * * *
37617078 TACATAACTTATATAACTTATATAACTTACATAACTTATATAACA
1 TACATAACTTACATAACTTATATAACTTAGATAACATATATAACT
* * * * *
37617123 TATATAAC-TACATAACTTATATAACATACATAGCTTATATAACT
1 TACATAACTTACATAACTTATATAACTTAGATAACATATATAACT
* * * * *
37617167 TATATAACTTAGATAA-ATATATAACTTACATAA-ATTACATAATACT
1 TACATAACTTACATAACTTATATAACTTAGATAACA-TATAT-A-ACT
* * * * * *
37617213 TAAATATATTTTATATCATAATTTACATAACTTACATAACTTATATAACT
1 TACATA-A--CT-TA-CATAACTTATATAACTTAGATAACATATATAACT
* * * * * * * * *
37617263 TAGATAA-ATATATAATTTACATAA-ATATATATCATATCATAAAT
1 TACATAACTTACATAACTTATATAACTTAGATAACATAT-ATAACT
37617307 TACATAACTTACATAA
1 TACATAACTTACATAA
37617323 TACTTAAATA
Statistics
Matches: 158, Mismatches: 29, Indels: 26
0.74 0.14 0.12
Matches are distributed among these distances:
43 9 0.06
44 82 0.52
45 22 0.14
46 8 0.05
47 1 0.01
49 2 0.01
50 10 0.06
51 5 0.03
52 19 0.12
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (45 bp):
TACATAACTTACATAACTTATATAACTTAGATAACATATATAACT
Found at i:37617153 original size:71 final size:72
Alignment explanation
Indices: 37617067--37617199 Score: 99
Period size: 71 Copynumber: 1.9 Consensus size: 72
37617057 ATTTATATAA
* * * * * * *
37617067 CTTACAAAACGTACATAACTTATATAACTTATATAACTTACATAACTTATATAACATATATAAC-
1 CTTACATAACTTACATAACTTACATAACTTATATAACATATATAA-TTACATAACTTATATAACA
37617131 TA-CATAA
65 TATCATAA
* * * * * * * * *
37617138 CTTATATAACATACATAGCTTATATAACTTATATAACTTAGATAAATATATAACTTACATAA
1 CTTACATAACTTACATAACTTACATAACTTATATAACATATATAATTACATAACTTATATAA
37617200 ATTACATAAT
Statistics
Matches: 54, Mismatches: 8, Indels: 1
0.86 0.13 0.02
Matches are distributed among these distances:
70 14 0.26
71 40 0.74
ACGTcount: A:0.47, C:0.15, G:0.02, T:0.35
Consensus pattern (72 bp):
CTTACATAACTTACATAACTTACATAACTTATATAACATATATAATTACATAACTTATATAACAT
ATCATAA
Found at i:37617208 original size:26 final size:26
Alignment explanation
Indices: 37617158--37617208 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
37617148 ATACATAGCT
* * *
37617158 TATATAACTTATATAACTTAGATAAA
1 TATATAACTTACATAAATTACATAAA
37617184 TATATAACTTACATAAATTACATAA
1 TATATAACTTACATAAATTACATAA
37617209 TACTTAAATA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.51, C:0.10, G:0.02, T:0.37
Consensus pattern (26 bp):
TATATAACTTACATAAATTACATAAA
Found at i:37617250 original size:114 final size:113
Alignment explanation
Indices: 37617126--37617346 Score: 284
Period size: 114 Copynumber: 1.9 Consensus size: 113
37617116 TATAACATAT
** * *
37617126 ATAACTACATAACTTATATAACATACATAGCTTATATAACTTATATAACTTAGATA-AATAT-AT
1 ATAACTACATAACTTATATAACATACATA-AATATATAACTTACATAA-ATAGATATAATATCAT
* * *
37617189 AACTTACATAAATTACATAATACTTAAATATATTTTATATCATAATTTAC
64 AAATTACATAAATTACATAATACTTAAATATATATCATATCATAATTTAC
* * * * *
37617239 ATAACTTACATAACTTATATAACTTAGATAAATATATAATTTACATAAATATATATCATATCATA
1 ATAAC-TACATAACTTATATAACATACATAAATATATAACTTACATAAATAGATATAATATCATA
*
37617304 AATTACATAACTTACATAATACTTAAATATATATCATATCATA
65 AATTACATAAATTACATAATACTTAAATATATATCATATCATA
37617347 CATAACTAGT
Statistics
Matches: 92, Mismatches: 13, Indels: 5
0.84 0.12 0.05
Matches are distributed among these distances:
112 5 0.05
113 23 0.25
114 64 0.70
ACGTcount: A:0.48, C:0.12, G:0.01, T:0.38
Consensus pattern (113 bp):
ATAACTACATAACTTATATAACATACATAAATATATAACTTACATAAATAGATATAATATCATAA
ATTACATAAATTACATAATACTTAAATATATATCATATCATAATTTAC
Found at i:37623000 original size:21 final size:21
Alignment explanation
Indices: 37622967--37623017 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
37622957 ACAACTTAGA
*
37622967 GCAGAGGCAGCAGAGAGGGAG
1 GCAGAGGCAGCAGAGAGAGAG
* * *
37622988 GCAGCGGCTGCAGCGAGAGAG
1 GCAGAGGCAGCAGAGAGAGAG
37623009 GCAGAGGCA
1 GCAGAGGCA
37623018 CGAGCGATGG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.49, T:0.02
Consensus pattern (21 bp):
GCAGAGGCAGCAGAGAGAGAG
Found at i:37623306 original size:33 final size:33
Alignment explanation
Indices: 37623258--37623337 Score: 92
Period size: 31 Copynumber: 2.5 Consensus size: 33
37623248 AGAATTAATA
* *
37623258 TTTTTGGTTGTATTTTTTATGTTAAATTTGTTG
1 TTTTTGGTTGCATTTTTTATATTAAATTTGTTG
* *
37623291 TTTTTGGCTGCA--TTTTATATTATATTTGTTG
1 TTTTTGGTTGCATTTTTTATATTAAATTTGTTG
* *
37623322 TATTTGGTTGGATTTT
1 TTTTTGGTTGCATTTT
37623338 AATGCAGGAA
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
31 26 0.68
33 12 0.32
ACGTcount: A:0.15, C:0.03, G:0.19, T:0.64
Consensus pattern (33 bp):
TTTTTGGTTGCATTTTTTATATTAAATTTGTTG
Found at i:37623437 original size:43 final size:42
Alignment explanation
Indices: 37623390--37623534 Score: 184
Period size: 44 Copynumber: 3.4 Consensus size: 42
37623380 ATCTGCCAAA
* *
37623390 TTTAGCGGCG-TTTGTAAAAAAAGCGCCGCTAAAAGCCTTGACC
1 TTTAGCGGCGCTTT-TACACAAA-CGCCGCTAAAAGCCTTGACC
*
37623433 TTTAGCGGCGCTTTTACCACAAACGCCGCTAAAAAGCCTTGACG
1 TTTAGCGGCGCTTTTA-CACAAACGCCGCT-AAAAGCCTTGACC
* *
37623477 TTTAGCGGTGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACC
1 TTTAGCGGCGCTTTT-ACACAAACGCCGCTAAAAGCCTTGACC
*
37623520 TTTAGCGGCGTTTTT
1 TTTAGCGGCGCTTTT
37623535 TCCAATAAAC
Statistics
Matches: 90, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
43 44 0.49
44 46 0.51
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (42 bp):
TTTAGCGGCGCTTTTACACAAACGCCGCTAAAAGCCTTGACC
Found at i:37623537 original size:44 final size:43
Alignment explanation
Indices: 37623413--37623534 Score: 199
Period size: 44 Copynumber: 2.8 Consensus size: 43
37623403 GTAAAAAAAG
*
37623413 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTACCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
* *
37623456 CGCCGCTAAAAAGCCTTGACGTTTAGCGGTGCTTTTCCCACAAA
1 CGCCGCT-AAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
*
37623500 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGTTTTT
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTT
37623535 TCCAATAAAC
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
43 32 0.44
44 40 0.56
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.26
Consensus pattern (43 bp):
CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
Found at i:37623884 original size:31 final size:31
Alignment explanation
Indices: 37623849--37623912 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
37623839 CATTTACAGT
37623849 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
37623880 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
37623911 AA
1 AA
37623913 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:37634222 original size:79 final size:81
Alignment explanation
Indices: 37634124--37634306 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
37634114 TACTCGTTCA
* ** *
37634124 AATGCCTTCGGGACATAGCCCGGTTA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAAATTAGTAACTCGCACAAATGCCTTC-AGATCTTAACCCGG
*
37634187 ATTTAGTAACTT-GCACC
65 ATATAGTAACTTAGCA-C
**
37634204 AATGCCTTCGGG-CTTAGCCC-GAAATTAGTAACTCGCACAAATGCCTTCAGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAAATTAGTAACTCGCACAAATGCCTTCAGATCTTAACCCGGA
* *
37634267 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
37634283 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
37634307 CATCATTCGA
Statistics
Matches: 88, Mismatches: 10, Indels: 9
0.82 0.09 0.08
Matches are distributed among these distances:
78 4 0.05
79 59 0.67
80 23 0.26
81 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAAATTAGTAACTCGCACAAATGCCTTCAGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:37634306 original size:40 final size:40
Alignment explanation
Indices: 37634103--37634306 Score: 211
Period size: 40 Copynumber: 5.1 Consensus size: 40
37634093 CGGAATTTAA
** *
37634103 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
37634143 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
37634183 CCGGATTTAGTAACTTGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
37634222 CC-GAAATTAGTAACTCGCACAAATGCCTTC-AGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
37634262 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
37634302 CCGGA
1 CCGGA
37634307 CATCATTCGA
Statistics
Matches: 135, Mismatches: 22, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
38 3 0.02
39 29 0.21
40 90 0.67
41 13 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:37641470 original size:43 final size:43
Alignment explanation
Indices: 37641398--37641521 Score: 135
Period size: 43 Copynumber: 2.9 Consensus size: 43
37641388 CATAAAGCTC
* * * * * *
37641398 ATACAATGCC-ATATCCCAGATATGATCTTACATGTTATC-AC
1 ATACAATGCCAATGTCCCAGACAGGGTCTTACATGTAATCAAA
* *
37641439 ATATCGATGCCATTGTCCCAGACAGGGTCTTACATGTAATCAAA
1 ATA-CAATGCCAATGTCCCAGACAGGGTCTTACATGTAATCAAA
* *
37641483 ATACAATGCCAATGTCCCAGACATGGCCTTACATGTAAT
1 ATACAATGCCAATGTCCCAGACAGGGTCTTACATGTAAT
37641522 TACATCTCGG
Statistics
Matches: 68, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
41 3 0.04
42 6 0.09
43 55 0.81
44 4 0.06
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (43 bp):
ATACAATGCCAATGTCCCAGACAGGGTCTTACATGTAATCAAA
Found at i:37643735 original size:18 final size:18
Alignment explanation
Indices: 37643709--37643743 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
37643699 TCGTAATGTT
*
37643709 GTGTTGTTTGGAAAACAA
1 GTGTCGTTTGGAAAACAA
*
37643727 GTGTCGTTTTGAAAACA
1 GTGTCGTTTGGAAAACA
37643744 CGTCCTAAGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.09, G:0.26, T:0.34
Consensus pattern (18 bp):
GTGTCGTTTGGAAAACAA
Found at i:37644382 original size:25 final size:26
Alignment explanation
Indices: 37644350--37644447 Score: 137
Period size: 25 Copynumber: 3.8 Consensus size: 26
37644340 CCTCTTTAAT
**
37644350 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
* *
37644375 AACAGGGGCA-AAGCCCTTTCCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
37644400 AACTGGGGCATAAGCCCTTTTTCAATA
1 AACTGGGGCATAAGCCC-TTTTCAATA
37644427 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
37644448 GCACTTCCTC
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
25 30 0.46
26 10 0.15
27 25 0.38
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.24
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:37644522 original size:20 final size:20
Alignment explanation
Indices: 37644497--37644544 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
37644487 TTATGAATAC
37644497 ATCATGTACATATCATA-CA
1 ATCATGTACATATCATATCA
**
37644516 TATCATGTGTATATCATATCA
1 -ATCATGTACATATCATATCA
37644537 ATCATGTA
1 ATCATGTA
37644545 TATCAAAATC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 22 0.92
21 2 0.08
ACGTcount: A:0.38, C:0.17, G:0.08, T:0.38
Consensus pattern (20 bp):
ATCATGTACATATCATATCA
Found at i:37645963 original size:14 final size:15
Alignment explanation
Indices: 37645937--37645965 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
37645927 GGCACAAGTG
37645937 AAAAGAAAGAAAAGA
1 AAAAGAAAGAAAAGA
37645952 AAAAGAAA-AAAAGA
1 AAAAGAAAGAAAAGA
37645966 GAGCAAAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (15 bp):
AAAAGAAAGAAAAGA
Found at i:37650360 original size:18 final size:18
Alignment explanation
Indices: 37650334--37650368 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
37650324 TCGTAACGTT
*
37650334 GTGTTGTTTGGAAAACAA
1 GTGTCGTTTGGAAAACAA
*
37650352 GTGTCGTTTTGAAAACA
1 GTGTCGTTTGGAAAACA
37650369 CGTCCTAAGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.09, G:0.26, T:0.34
Consensus pattern (18 bp):
GTGTCGTTTGGAAAACAA
Found at i:37651052 original size:27 final size:27
Alignment explanation
Indices: 37650964--37651151 Score: 255
Period size: 27 Copynumber: 7.2 Consensus size: 27
37650954 AGAGGCCTAG
* *
37650964 CCTTTTT-AAT-AACTGGGG-AAAAAC
1 CCTTTTTCAATAAACTGGGGCATAAGC
** *
37650988 CC-TTTTCGGTAAACTAGGGCA-AAGC
1 CCTTTTTCAATAAACTGGGGCATAAGC
37651013 CC-TTTTCAATAAACTGGGGCATAAGC
1 CCTTTTTCAATAAACTGGGGCATAAGC
*
37651039 TCTTTTTCAATAAACTGGGGCATAAGC
1 CCTTTTTCAATAAACTGGGGCATAAGC
37651066 CCTTTTTCAATAAACTGGGGCATAAG-
1 CCTTTTTCAATAAACTGGGGCATAAGC
* *
37651092 CCATTTTCAATAAACTAGGGCATAAGC
1 CCTTTTTCAATAAACTGGGGCATAAGC
37651119 CCTTTTTCAATAAACTGGGGCATAAGC
1 CCTTTTTCAATAAACTGGGGCATAAGC
37651146 CCTTTT
1 CCTTTT
37651152 GGACTTCCTC
Statistics
Matches: 145, Mismatches: 13, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
23 4 0.03
24 3 0.02
25 28 0.19
26 30 0.21
27 80 0.55
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.30
Consensus pattern (27 bp):
CCTTTTTCAATAAACTGGGGCATAAGC
Found at i:37651100 original size:53 final size:53
Alignment explanation
Indices: 37650964--37651151 Score: 269
Period size: 53 Copynumber: 3.6 Consensus size: 53
37650954 AGAGGCCTAG
* * **
37650964 CCTTTTT-AAT-AACTGGGG-AAAAACCCTTTTCGGTAAACTAGGGCA-AAGC
1 CCTTTTTCAATAAACTGGGGCATAAGCCCTTTTCAATAAACTAGGGCATAAGC
* *
37651013 CC-TTTTCAATAAACTGGGGCATAAGCTCTTTTTCAATAAACTGGGGCATAAGC
1 CCTTTTTCAATAAACTGGGGCATAAGC-CCTTTTCAATAAACTAGGGCATAAGC
*
37651066 CCTTTTTCAATAAACTGGGGCATAAGCCATTTTCAATAAACTAGGGCATAAGC
1 CCTTTTTCAATAAACTGGGGCATAAGCCCTTTTCAATAAACTAGGGCATAAGC
37651119 CCTTTTTCAATAAACTGGGGCATAAGCCCTTTT
1 CCTTTTTCAATAAACTGGGGCATAAGCCCTTTT
37651152 GGACTTCCTC
Statistics
Matches: 124, Mismatches: 9, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
48 4 0.03
49 5 0.04
50 8 0.06
51 4 0.03
52 17 0.14
53 62 0.50
54 24 0.19
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.30
Consensus pattern (53 bp):
CCTTTTTCAATAAACTGGGGCATAAGCCCTTTTCAATAAACTAGGGCATAAGC
Found at i:37651105 original size:80 final size:79
Alignment explanation
Indices: 37650964--37651151 Score: 267
Period size: 80 Copynumber: 2.4 Consensus size: 79
37650954 AGAGGCCTAG
* * ** *
37650964 CCTTTTT-AAT-AACTGGGG-AAAAACCC-TTTTCGGTAAACTAGGGCAAAGCCCTTTTCAATAA
1 CCTTTTTCAATAAACTGGGGCATAAGCCCTTTTTCAATAAACTAGGGCAAAGCCATTTTCAATAA
*
37651025 ACTGGGGCATAAGC
66 ACTAGGGCATAAGC
* *
37651039 TCTTTTTCAATAAACTGGGGCATAAGCCCTTTTTCAATAAACTGGGGCATAAGCCATTTTCAATA
1 CCTTTTTCAATAAACTGGGGCATAAGCCCTTTTTCAATAAACTAGGGCA-AAGCCATTTTCAATA
37651104 AACTAGGGCATAAGC
65 AACTAGGGCATAAGC
37651119 CCTTTTTCAATAAACTGGGGCATAAGCCCTTTT
1 CCTTTTTCAATAAACTGGGGCATAAGCCCTTTT
37651152 GGACTTCCTC
Statistics
Matches: 99, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
75 6 0.06
76 3 0.03
77 8 0.08
78 6 0.06
79 16 0.16
80 60 0.61
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.30
Consensus pattern (79 bp):
CCTTTTTCAATAAACTGGGGCATAAGCCCTTTTTCAATAAACTAGGGCAAAGCCATTTTCAATAA
ACTAGGGCATAAGC
Found at i:37651256 original size:11 final size:10
Alignment explanation
Indices: 37651206--37651255 Score: 50
Period size: 9 Copynumber: 5.0 Consensus size: 10
37651196 AATACATTAG
37651206 GTGCATATCA
1 GTGCATATCA
*
37651216 -TACATATCA
1 GTGCATATCA
37651225 CGTGCATATC-
1 -GTGCATATCA
*
37651235 GTACATATCA
1 GTGCATATCA
37651245 TGTGCATATCA
1 -GTGCATATCA
37651256 TATCAATCAT
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
9 16 0.50
11 16 0.50
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.32
Consensus pattern (10 bp):
GTGCATATCA
Found at i:37651264 original size:20 final size:20
Alignment explanation
Indices: 37651206--37651267 Score: 90
Period size: 20 Copynumber: 3.1 Consensus size: 20
37651196 AATACATTAG
*
37651206 GTGCATATCATACATATCAC
1 GTGCATATCATACATATCAT
*
37651226 GTGCATATCGTACATATCAT
1 GTGCATATCATACATATCAT
37651246 GTGCATATCATATCA-ATCAT
1 GTGCATATCATA-CATATCAT
37651266 GT
1 GT
37651268 ATATCAAAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
20 36 0.95
21 2 0.05
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.34
Consensus pattern (20 bp):
GTGCATATCATACATATCAT
Found at i:37657989 original size:23 final size:23
Alignment explanation
Indices: 37657934--37657981 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
37657924 GAAATTGAAG
37657934 AGAGAAGAGACCATACCCAAGCT
1 AGAGAAGAGACCATACCCAAGCT
37657957 AGAGAAGAGACCATACCCAAGCT
1 AGAGAAGAGACCATACCCAAGCT
37657980 AG
1 AG
37657982 TCGAGAGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.44, C:0.25, G:0.23, T:0.08
Consensus pattern (23 bp):
AGAGAAGAGACCATACCCAAGCT
Found at i:37659930 original size:45 final size:45
Alignment explanation
Indices: 37659866--37659955 Score: 153
Period size: 45 Copynumber: 2.0 Consensus size: 45
37659856 TAAAAGAGTT
*
37659866 CATTCATTAGGTCGTGTATGCTTAGGATTCATTTTATTATTGATA
1 CATTCATTAGGTCGTGTATGCTTAAGATTCATTTTATTATTGATA
* *
37659911 CATTCATTAGGTCGTGTATGCTTAAGTTTCATTTTATTGTTGATA
1 CATTCATTAGGTCGTGTATGCTTAAGATTCATTTTATTATTGATA
37659956 GAGTTAGTTT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.23, C:0.11, G:0.18, T:0.48
Consensus pattern (45 bp):
CATTCATTAGGTCGTGTATGCTTAAGATTCATTTTATTATTGATA
Found at i:37661948 original size:40 final size:39
Alignment explanation
Indices: 37661864--37662048 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 39
37661854 TTGAATGATG
* * * *
37661864 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
37661904 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
37661944 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
37661983 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
37662024 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
37662049 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:37662000 original size:79 final size:81
Alignment explanation
Indices: 37661864--37662046 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
37661854 TTGAATGATG
* *
37661864 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
37661928 TGTGCGAGATACTA-A
66 TGTGCGAGATACTACA
* * * **
37661943 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
37662005 TTTGTGCGAGTTACTACA
64 TTTGTGCGAGATACTACA
* *
37662023 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
37662047 TGAACGAGGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTACA
Found at i:37662070 original size:79 final size:79
Alignment explanation
Indices: 37661917--37662081 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
37661907 GGACTAAGAT
* ** *
37661917 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAA
*
37661982 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
37661996 CCGAAGGCATTTGTGCGAGTTACTACA-ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGC
1 CCGAAGGCATTTGTGCGAGATACTA-ATACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTGA-C
* *
37662059 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
37662075 CCGAAGG
1 CCGAAGG
37662082 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 48 0.66
80 25 0.34
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAA
ATCCGGGTTAAATC
Found at i:37666051 original size:41 final size:41
Alignment explanation
Indices: 37665923--37666156 Score: 334
Period size: 41 Copynumber: 5.8 Consensus size: 41
37665913 GGATATAGCT
* * * *
37665923 ACTCGCTC-AATGCCTTCGGGACATAGCCC-GAATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATGTAATA
* *
37665962 ACTCACACAAATGCCTTCGGGACTAAGCCCGG-ATGTAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATGTAATA
37666002 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATGTAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATGTAATA
37666043 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATGTAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATGTAATA
* * *
37666084 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA-CTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATGTAATA
37666124 ACTAGCGCA-AAATGCCTTCGGGACTTAGCCCGG
1 ACT--CGCACAAATGCCTTCGGGACTTAGCCCGG
37666157 TTATCATCCA
Statistics
Matches: 179, Mismatches: 11, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
39 6 0.03
40 61 0.34
41 108 0.60
42 4 0.02
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (41 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATGTAATA
Found at i:37670427 original size:47 final size:47
Alignment explanation
Indices: 37670375--37671019 Score: 1038
Period size: 47 Copynumber: 13.6 Consensus size: 47
37670365 GATAATTGTG
* * *
37670375 ATGTGAATGTATATATATGTGATAAGGCCAAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
37670422 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
37670469 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
37670518 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
37670567 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
37670614 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
37670663 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
37670710 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
37670757 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
37670804 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCTGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
37670853 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
37670900 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
37670947 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
37670994 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
37671020 TCCCGAAGGG
Statistics
Matches: 562, Mismatches: 30, Indels: 12
0.93 0.05 0.02
Matches are distributed among these distances:
47 379 0.67
49 183 0.33
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:37670482 original size:96 final size:94
Alignment explanation
Indices: 37670375--37671019 Score: 1038
Period size: 96 Copynumber: 6.8 Consensus size: 94
37670365 GATAATTGTG
* * *
37670375 ATGTGAATGTATATATATGTGATAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* *
37670440 GTGATAAGGCCGAATGGCCAATGTGATGA
66 GTGATAAGGCCTAATGGCCGATGTGATGA
*
37670469 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG--TAT
*
37670534 ATATGTGATAAGGCCTAATAGCCGATGTGATGA
62 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
37670567 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
37670632 ATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
37670663 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
37670728 GTGATAAGGCCTAATGGCCGATGTGATGA
66 GTGATAAGGCCTAATGGCCGATGTGATGA
*
37670757 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
*
37670822 ATGTGATAAGGCCTAATGGCTGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
37670853 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
37670918 GTGATGAGGCCTAATGGCCGATGTGATGA
66 GTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
37670947 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
37671012 GTGATAAG
66 GTGATAAG
37671020 TCCCGAAGGG
Statistics
Matches: 518, Mismatches: 27, Indels: 12
0.93 0.05 0.02
Matches are distributed among these distances:
94 198 0.38
96 276 0.53
98 44 0.08
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (94 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:37670811 original size:190 final size:190
Alignment explanation
Indices: 37670375--37671019 Score: 1082
Period size: 190 Copynumber: 3.4 Consensus size: 190
37670365 GATAATTGTG
* * * *
37670375 ATGTGAATGTATATATATGTGATAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
* *
37670438 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAA
*
37670503 TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGA
129 TGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
37670567 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
37670632 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
37670697 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
131 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
37670757 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
* *
37670822 ATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
*
37670887 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
131 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * *
37670947 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
37671010 ATGTGATAAG
66 ATGTGATAAG
37671020 TCCCGAAGGG
Statistics
Matches: 436, Mismatches: 15, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
188 10 0.02
189 1 0.00
190 278 0.64
192 102 0.23
194 45 0.10
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (190 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:37673341 original size:40 final size:40
Alignment explanation
Indices: 37673282--37673642 Score: 544
Period size: 40 Copynumber: 9.1 Consensus size: 40
37673272 AGGTCTCGAC
37673282 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
37673321 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
37673361 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
37673401 GATGTACCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
37673441 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
37673481 GATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTCCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
37673521 GATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * ** *
37673561 GATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * * * * *
37673601 GTTATATCCGGGCTAGGTCCAGAAGAGCAATCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
37673641 GA
1 GA
37673643 CGTGTATTCA
Statistics
Matches: 294, Mismatches: 27, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
39 4 0.01
40 290 0.99
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
Found at i:37677003 original size:47 final size:47
Alignment explanation
Indices: 37676951--37677595 Score: 1056
Period size: 47 Copynumber: 13.6 Consensus size: 47
37676941 GATAATTGTG
* * *
37676951 ATGTGAATGTATATATATGTGATAAGGTCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
37676998 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
37677045 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
37677094 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
37677143 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
37677190 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
37677237 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
37677286 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
37677333 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
37677380 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
37677429 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
37677476 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
37677523 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
37677570 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
37677596 TCCCGAAGGG
Statistics
Matches: 565, Mismatches: 27, Indels: 12
0.94 0.04 0.02
Matches are distributed among these distances:
47 380 0.67
49 185 0.33
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:37677058 original size:96 final size:94
Alignment explanation
Indices: 37676951--37677595 Score: 1056
Period size: 96 Copynumber: 6.8 Consensus size: 94
37676941 GATAATTGTG
* * *
37676951 ATGTGAATGTATATATATGTGATAAGGTCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* *
37677016 GTGATAAGGCCGAATGGCCAATGTGATGA
66 GTGATAAGGCCTAATGGCCGATGTGATGA
37677045 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
37677110 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
62 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
37677143 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
37677208 GTGATAAGGCCGAATGGCCGATGTGATGA
66 GTGATAAGGCCTAATGGCCGATGTGATGA
37677237 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
37677302 ATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
37677333 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
37677398 ATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
37677429 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
37677494 GTGATGAGGCCTAATGGCCGATGTGATGA
66 GTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * * *
37677523 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
37677588 GTGATAAG
66 GTGATAAG
37677596 TCCCGAAGGG
Statistics
Matches: 520, Mismatches: 23, Indels: 16
0.93 0.04 0.03
Matches are distributed among these distances:
94 198 0.38
96 277 0.53
98 45 0.09
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (94 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:37677098 original size:143 final size:143
Alignment explanation
Indices: 37676951--37677595 Score: 1100
Period size: 143 Copynumber: 4.5 Consensus size: 143
37676941 GATAATTGTG
*
37676951 ATGTG-AA-TGTATATATATGTGATAAGGTCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * *
37677014 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAA
37677079 TGGCCGATGTGATGA
129 TGGCCGATGTGATGA
37677094 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
37677159 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
37677224 GCCGATGTGATGA
131 GCCGATGTGATGA
37677237 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
37677302 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
*
37677367 GCCAATGTGATGA
131 GCCGATGTGATGA
37677380 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * *
37677445 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
37677510 GCCGATGTGATGA
131 GCCGATGTGATGA
* * * * * * * *
37677523 ATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
37677586 ATGTGATAAG
66 ATGTGATAAG
37677596 TCCCGAAGGG
Statistics
Matches: 483, Mismatches: 17, Indels: 6
0.95 0.03 0.01
Matches are distributed among these distances:
141 54 0.11
143 332 0.69
144 2 0.00
145 95 0.20
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (143 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
GCCGATGTGATGA
Found at i:37683392 original size:29 final size:29
Alignment explanation
Indices: 37683351--37683428 Score: 113
Period size: 29 Copynumber: 2.7 Consensus size: 29
37683341 CCAACCTTTA
* *
37683351 TCATGTGGCCCATGAGGCCCAAATCACAT
1 TCATATGGCCCATTAGGCCCAAATCACAT
* *
37683380 TTATATGGCCCATTAGACCCAAATCACAT
1 TCATATGGCCCATTAGGCCCAAATCACAT
37683409 TCATATGG-CCATTAGGCCCA
1 TCATATGGCCCATTAGGCCCA
37683429 CAAACATTTA
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
28 11 0.26
29 32 0.74
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.24
Consensus pattern (29 bp):
TCATATGGCCCATTAGGCCCAAATCACAT
Found at i:37687411 original size:28 final size:28
Alignment explanation
Indices: 37687379--37687470 Score: 100
Period size: 29 Copynumber: 3.2 Consensus size: 28
37687369 AGCCCACTAA
* *
37687379 GCCC-AATCTCTTTCATATGGCTCATGAG
1 GCCCAAATCACTTTCATATGGC-CATTAG
37687407 GCCCAAAT-AGCATTT-ATATGGCCCATTAG
1 GCCCAAATCA-C-TTTCATATGG-CCATTAG
*
37687436 GCCCAAATCACATTCATATGGCCATTAG
1 GCCCAAATCACTTTCATATGGCCATTAG
37687464 GCCCAAA
1 GCCCAAA
37687471 ACACATTTAC
Statistics
Matches: 55, Mismatches: 3, Indels: 12
0.79 0.04 0.17
Matches are distributed among these distances:
28 20 0.36
29 30 0.55
30 5 0.09
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.26
Consensus pattern (28 bp):
GCCCAAATCACTTTCATATGGCCATTAG
Found at i:37687427 original size:29 final size:28
Alignment explanation
Indices: 37687390--37687477 Score: 115
Period size: 29 Copynumber: 3.1 Consensus size: 28
37687380 CCCAATCTCT
*
37687390 TTCATATGGCTCATGAGGCCCAAAT-AGCA
1 TTCATATGGC-CATTAGGCCCAAATCA-CA
*
37687419 TTTATATGGCCCATTAGGCCCAAATCACA
1 TTCATATGG-CCATTAGGCCCAAATCACA
*
37687448 TTCATATGGCCATTAGGCCCAAAACACA
1 TTCATATGGCCATTAGGCCCAAATCACA
37687476 TT
1 TT
37687478 TACAGTCATG
Statistics
Matches: 53, Mismatches: 4, Indels: 5
0.85 0.06 0.08
Matches are distributed among these distances:
28 20 0.38
29 31 0.58
30 2 0.04
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (28 bp):
TTCATATGGCCATTAGGCCCAAATCACA
Found at i:37687478 original size:57 final size:57
Alignment explanation
Indices: 37687364--37687479 Score: 137
Period size: 57 Copynumber: 2.0 Consensus size: 57
37687354 CACATAGCTG
* * *
37687364 TATATAGCCCACTAAGCCCAATCTCTTTCATATGGCTCATGAGGCCCAAATAGCATT
1 TATATAGCCCACTAAGCCCAATCACATTCATATGGCTCATGAGGCCCAAATAACATT
* * * *
37687421 TATATGGCCCATTAGGCCCAAATCACATTCATATGGC-CATTAGGCCCAAA-ACACATT
1 TATATAGCCCACTAAGCCC-AATCACATTCATATGGCTCATGAGGCCCAAATA-ACATT
37687478 TA
1 TA
37687480 CAGTCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
56 1 0.02
57 34 0.68
58 15 0.30
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.27
Consensus pattern (57 bp):
TATATAGCCCACTAAGCCCAATCACATTCATATGGCTCATGAGGCCCAAATAACATT
Found at i:37699644 original size:17 final size:17
Alignment explanation
Indices: 37699622--37699662 Score: 82
Period size: 17 Copynumber: 2.4 Consensus size: 17
37699612 TGCCTATTAT
37699622 GGGCCCAACAGCCCATC
1 GGGCCCAACAGCCCATC
37699639 GGGCCCAACAGCCCATC
1 GGGCCCAACAGCCCATC
37699656 GGGCCCA
1 GGGCCCA
37699663 TTTAGCCCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.22, C:0.46, G:0.27, T:0.05
Consensus pattern (17 bp):
GGGCCCAACAGCCCATC
Found at i:37707901 original size:27 final size:28
Alignment explanation
Indices: 37707817--37707914 Score: 128
Period size: 27 Copynumber: 3.5 Consensus size: 28
37707807 TCATGAGATG
* * *
37707817 GCACTAAGTGTGCGGGTTTAAATTGT-TCA
1 GCACTAAGTGTGCGAGTTT-GATTATAT-A
37707846 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
37707874 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
37707901 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
37707915 GACTTAATAT
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
27 24 0.38
28 21 0.33
29 19 0.30
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:37707928 original size:29 final size:27
Alignment explanation
Indices: 37707845--37707929 Score: 98
Period size: 27 Copynumber: 3.0 Consensus size: 27
37707835 TAAATTGTTC
* *
37707845 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTAATTATAT
* *
37707873 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTAATTATAT
*
37707900 AGCACTGAGTGTGCGGACTTAATATATAT
1 AGCACTAAGTGTGC-GACTTAAT-TATAT
37707929 A
1 A
37707930 TTTTTGAATC
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 23 0.45
28 22 0.43
29 6 0.12
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTAATTATAT
Found at i:37713112 original size:29 final size:27
Alignment explanation
Indices: 37713037--37713118 Score: 94
Period size: 27 Copynumber: 3.0 Consensus size: 27
37713027 GTGAGGCTGT
* *
37713037 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGGCGAAGCCACCAGATA
* *
37713064 CAGATATTGTGGCTAGGCCACCAGA-A
1 CAGATATTGTGGCGAAGCCACCAGATA
37713090 CAGATATATATGTGGCGAAGCCACCAGAT
1 CAG--ATAT-TGTGGCGAAGCCACCAGAT
37713119 TGCAGCGAGG
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
26 4 0.09
27 21 0.47
28 4 0.09
29 16 0.36
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.21
Consensus pattern (27 bp):
CAGATATTGTGGCGAAGCCACCAGATA
Found at i:37713138 original size:69 final size:66
Alignment explanation
Indices: 37713064--37713197 Score: 196
Period size: 67 Copynumber: 2.0 Consensus size: 66
37713054 TCACCAGATA
* * *
37713064 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATGTGGCGAAGCCACCAGATTGCAGCGAGG
1 CAGATATTGTGACGAAGCCACCAGAACAG--ATATATGTGGCGAAGCCACCAGATTGC-GCGAGG
37713129 CTGT
63 CTGT
* *
37713133 CAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGATTGCGCGAGGCTG
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCGCGAGGCTG
37713198 CTAGAACGCG
Statistics
Matches: 60, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
66 9 0.15
67 26 0.43
69 25 0.42
ACGTcount: A:0.29, C:0.22, G:0.30, T:0.19
Consensus pattern (66 bp):
CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCGCGAGGCTG
T
Found at i:37713181 original size:27 final size:26
Alignment explanation
Indices: 37713133--37713184 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
37713123 GCGAGGCTGT
*
37713133 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
37713159 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
37713185 TTGCGCGAGG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:37721032 original size:24 final size:24
Alignment explanation
Indices: 37721004--37721138 Score: 132
Period size: 24 Copynumber: 5.7 Consensus size: 24
37720994 GAAATGACTT
*
37721004 TGGCACTATGTGTACGAATTTGAA
1 TGGCACTATGTGTGCGAATTTGAA
*
37721028 TGGCACTATGTGTGCGAATTTGTA
1 TGGCACTATGTGTGCGAATTTGAA
* * * *
37721052 CGACACTATGTGTGCGGATTTGTA
1 TGGCACTATGTGTGCGAATTTGAA
*
37721076 T-GCACTATGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGAATTTGAA
* * * *
37721099 TGTCAATATGTATGTGAATTACT-AA
1 TGGCACTATGTGTGCGAATT--TGAA
37721124 -GGCACTATGTGTGCG
1 TGGCACTATGTGTGCG
37721139 GGTAAACATG
Statistics
Matches: 91, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
23 21 0.23
24 67 0.74
25 2 0.02
26 1 0.01
ACGTcount: A:0.24, C:0.13, G:0.27, T:0.35
Consensus pattern (24 bp):
TGGCACTATGTGTGCGAATTTGAA
Found at i:37721109 original size:47 final size:48
Alignment explanation
Indices: 37721010--37721109 Score: 121
Period size: 47 Copynumber: 2.1 Consensus size: 48
37721000 ACTTTGGCAC
* *
37721010 TATGTGTACGAATTTGAATGGCACTATGTGTGCGAATTTGTACGACAC
1 TATGTGTACGAATTTGAATGGCACTATGTGTGCGAATTTGAACGACAA
* * * * * *
37721058 TATGTGTGCGGATTTGTAT-GCACTATGTGTGCGGATTTGAATGTCAA
1 TATGTGTACGAATTTGAATGGCACTATGTGTGCGAATTTGAACGACAA
37721105 TATGT
1 TATGT
37721110 ATGTGAATTA
Statistics
Matches: 44, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
47 28 0.64
48 16 0.36
ACGTcount: A:0.24, C:0.12, G:0.27, T:0.37
Consensus pattern (48 bp):
TATGTGTACGAATTTGAATGGCACTATGTGTGCGAATTTGAACGACAA
Found at i:37721130 original size:71 final size:71
Alignment explanation
Indices: 37721006--37721139 Score: 178
Period size: 71 Copynumber: 1.9 Consensus size: 71
37720996 AATGACTTTG
* * ** *
37721006 GCACTATGTGTACGAATTTGAATGGCACTATGTGTGCGAATTTGTACGACACTATGTGTGCGGAT
1 GCACTATGTGTACGAATTTGAATGGCAATATGTATGCGAATTACTAAGACACTATGTGTGCGGAT
37721071 TTGTAT
66 TTGTAT
* * * * *
37721077 GCACTATGTGTGCGGATTTGAATGTCAATATGTATGTGAATTACTAAGGCACTATGTGTGCGG
1 GCACTATGTGTACGAATTTGAATGGCAATATGTATGCGAATTACTAAGACACTATGTGTGCGG
37721140 GTAAACATGG
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
71 53 1.00
ACGTcount: A:0.25, C:0.13, G:0.28, T:0.34
Consensus pattern (71 bp):
GCACTATGTGTACGAATTTGAATGGCAATATGTATGCGAATTACTAAGACACTATGTGTGCGGAT
TTGTAT
Found at i:37726127 original size:10 final size:10
Alignment explanation
Indices: 37726092--37726121 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
37726082 AAACACCAAG
37726092 AGTTTGAATA
1 AGTTTGAATA
37726102 AGTTTGAATA
1 AGTTTGAATA
37726112 AGTTTGAATA
1 AGTTTGAATA
37726122 TATTTGTTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (10 bp):
AGTTTGAATA
Found at i:37735710 original size:10 final size:10
Alignment explanation
Indices: 37735675--37735704 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
37735665 AAACACCAAG
37735675 AGTTTGAATA
1 AGTTTGAATA
37735685 AGTTTGAATA
1 AGTTTGAATA
37735695 AGTTTGAATA
1 AGTTTGAATA
37735705 TATTTGTTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (10 bp):
AGTTTGAATA
Found at i:37737075 original size:17 final size:19
Alignment explanation
Indices: 37737053--37737089 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
37737043 TTGGGTTTAT
37737053 TGGG-CCACACGGG-CGTG
1 TGGGCCCACACGGGTCGTG
*
37737070 TGGGCCCACATGGGTCGTG
1 TGGGCCCACACGGGTCGTG
37737089 T
1 T
37737090 TATGGGCTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 4 0.24
18 8 0.47
19 5 0.29
ACGTcount: A:0.11, C:0.27, G:0.43, T:0.19
Consensus pattern (19 bp):
TGGGCCCACACGGGTCGTG
Found at i:37752343 original size:55 final size:55
Alignment explanation
Indices: 37752222--37752345 Score: 151
Period size: 55 Copynumber: 2.3 Consensus size: 55
37752212 TGCGATATGG
* * * * *
37752222 CCGTGGTCGAGCTTGCCAAAACAACACGGGCGTGTGACACGCCCGTGTGGAAGAA
1 CCGTGGTCGAACCTGCCAAAACAACACGGACGTGTGACACGCCCGTGTGAAACAA
* * * *
37752277 CTGTGGGCGAACCTGCCAAAACAACACGGACGT-TCGACACGCTCGTGTGAAACAC
1 CCGTGGTCGAACCTGCCAAAACAACACGGACGTGT-GACACGCCCGTGTGAAACAA
37752332 CCGTGGTCGAACCT
1 CCGTGGTCGAACCT
37752346 ATTAAATTAA
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
54 1 0.02
55 56 0.98
ACGTcount: A:0.26, C:0.30, G:0.29, T:0.15
Consensus pattern (55 bp):
CCGTGGTCGAACCTGCCAAAACAACACGGACGTGTGACACGCCCGTGTGAAACAA
Found at i:37757731 original size:40 final size:40
Alignment explanation
Indices: 37757685--37757909 Score: 272
Period size: 40 Copynumber: 5.6 Consensus size: 40
37757675 CTTGCGCAAG
* * *
37757685 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
37757725 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * *
37757765 GCCTTCGGGTTTTAGCCCAGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
37757805 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGTACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
37757845 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
37757886 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
37757910 CATTCGAATA
Statistics
Matches: 155, Mismatches: 27, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 1 0.01
40 126 0.81
41 28 0.18
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:37757780 original size:80 final size:80
Alignment explanation
Indices: 37757649--37757909 Score: 285
Period size: 80 Copynumber: 3.3 Consensus size: 80
37757639 CTCAAGTAAT
* * * * * * * *
37757649 CTTCGGGATTTAG-CCGGATATAACTACTTGCGC-AAGGCCTTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
37757712 CACTAGCATAAATGC
66 CACTAGCACAAATGC
* * * *
37757727 CTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCAGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
*
37757791 TCGCTAGCACAAATGC
65 TCACTAGCACAAATGC
* * * * * * *
37757807 CTTCGGGTCTTAGCCCGGATATAGCAACTCGTACGAATGCCTTCGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
37757872 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
37757888 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
37757910 CATTCGAATA
Statistics
Matches: 151, Mismatches: 27, Indels: 7
0.82 0.15 0.04
Matches are distributed among these distances:
78 12 0.08
79 15 0.10
80 91 0.60
81 33 0.22
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:37760846 original size:37 final size:37
Alignment explanation
Indices: 37760789--37760873 Score: 118
Period size: 37 Copynumber: 2.3 Consensus size: 37
37760779 CGATCATAAG
*
37760789 TGTAAGACCATAGTCGGGCTATGGCATTGTAATAACA
1 TGTAAGACCATAGTCAGGCTATGGCATTGTAATAACA
* **
37760826 TGTAAGACCATAG-CTAGGCTATGGCATTGTGATCCCA
1 TGTAAGACCATAGTC-AGGCTATGGCATTGTAATAACA
37760863 TGTAAGACCAT
1 TGTAAGACCAT
37760874 GTTTGGGACA
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
36 1 0.02
37 42 0.98
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.27
Consensus pattern (37 bp):
TGTAAGACCATAGTCAGGCTATGGCATTGTAATAACA
Found at i:37760914 original size:48 final size:48
Alignment explanation
Indices: 37760853--37761081 Score: 307
Period size: 48 Copynumber: 4.8 Consensus size: 48
37760843 GCTATGGCAT
*
37760853 TGTGATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* *
37760901 TGTGATCCTATGTAAGACCATGTCTAGGACATGGCATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* *
37760949 TGTGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* * * **
37760997 TGTGATCCCATATAAGACCATATCTAGGATC-TGGGGTTGGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGA-CATGGCATTGGCATCGATA
**** *
37761045 TGTGATTTTGTGTAAGACCATGCCTGGGACATGGCAT
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCAT
37761082 CAATATGAGA
Statistics
Matches: 155, Mismatches: 24, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
47 1 0.01
48 153 0.99
49 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
Found at i:37762972 original size:12 final size:12
Alignment explanation
Indices: 37762955--37762979 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
37762945 ACTTCGTGTG
37762955 TTTGACGGGAAA
1 TTTGACGGGAAA
37762967 TTTGACGGGAAA
1 TTTGACGGGAAA
37762979 T
1 T
37762980 GTCACGTGCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.28
Consensus pattern (12 bp):
TTTGACGGGAAA
Found at i:37767746 original size:40 final size:40
Alignment explanation
Indices: 37767702--37767868 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
37767692 GGTAGCCTTA
* *
37767702 AATGCACAAATGTGCCCTTGATTGTACTTTAGTAACCCTG
1 AATGCACAAATGTGCCCCTGATTGTACTTTGGTAACCCTG
* * *
37767742 AATGCACATACGTACCCCT-ACTTGTACTTTGGT-ACTCCTG
1 AATGCACAAATGTGCCCCTGA-TTGTACTTTGGTAAC-CCTG
* * * *
37767782 AATGCACATAA-ATGCCCCTGATTGTACTTCGGTACCCCTA
1 AATGCACA-AATGTGCCCCTGATTGTACTTTGGTAACCCTG
* * * *
37767822 AATGCATATATGTGCCCCTGTTTGTACTTTGGTACCCCTG
1 AATGCACAAATGTGCCCCTGATTGTACTTTGGTAACCCTG
37767862 AATGCAC
1 AATGCAC
37767869 TTACATACCC
Statistics
Matches: 103, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
39 4 0.04
40 96 0.93
41 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.32
Consensus pattern (40 bp):
AATGCACAAATGTGCCCCTGATTGTACTTTGGTAACCCTG
Found at i:37767798 original size:80 final size:80
Alignment explanation
Indices: 37767714--37767904 Score: 220
Period size: 80 Copynumber: 2.4 Consensus size: 80
37767704 TGCACAAATG
* *
37767714 TGCCCTTGATTGTACTTTAGTAACCCTGAATGCACATACGTACCCCTACTTGTACTTTGGTACTC
1 TGCCCTTGATTGTACTTTAGTAACCCTAAATGCACATACGTACCCCTACTTGTACTTTGGTACCC
37767779 CTGAATGCACATAAA
66 CTGAATGCACATAAA
* ** * * * * **
37767794 TGCCCCTGATTGTACTTCGGTACCCCTAAATGCATATATGTGCCCCTGTTTGTACTTTGGTACCC
1 TGCCCTTGATTGTACTTTAGTAACCCTAAATGCACATACGTACCCCTACTTGTACTTTGGTACCC
* *
37767859 CTGAATGCACTTACA
66 CTGAATGCACATAAA
* * * * *
37767874 TACCCTTGTTTATACCTTAGTAACTCTAAAT
1 TGCCCTTGATTGTACTTTAGTAACCCTAAAT
37767905 CATATAGTAT
Statistics
Matches: 89, Mismatches: 22, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
80 89 1.00
ACGTcount: A:0.24, C:0.27, G:0.15, T:0.35
Consensus pattern (80 bp):
TGCCCTTGATTGTACTTTAGTAACCCTAAATGCACATACGTACCCCTACTTGTACTTTGGTACCC
CTGAATGCACATAAA
Found at i:37767870 original size:20 final size:20
Alignment explanation
Indices: 37767727--37767870 Score: 51
Period size: 20 Copynumber: 7.2 Consensus size: 20
37767717 CCTTGATTGT
* *
37767727 ACTTTAGTAACCCTGAATGC
1 ACTTTGGTACCCCTGAATGC
* ** * *
37767747 ACATACGTACCCCT-ACTTGT
1 ACTTTGGTACCCCTGA-ATGC
*
37767767 ACTTTGGTACTCCTGAATGC
1 ACTTTGGTACCCCTGAATGC
* *** * * *
37767787 ACATAAATGCCCCTGATTGT
1 ACTTTGGTACCCCTGAATGC
* *
37767807 ACTTCGGTACCCCTAAATGC
1 ACTTTGGTACCCCTGAATGC
* ** *
37767827 A-TATAT-GTGCCCCTGTTTGT
1 ACT-T-TGGTACCCCTGAATGC
37767847 ACTTTGGTACCCCTGAATGC
1 ACTTTGGTACCCCTGAATGC
37767867 ACTT
1 ACTT
37767871 ACATACCCTT
Statistics
Matches: 80, Mismatches: 38, Indels: 12
0.62 0.29 0.09
Matches are distributed among these distances:
19 3 0.04
20 75 0.94
21 2 0.03
ACGTcount: A:0.24, C:0.28, G:0.16, T:0.33
Consensus pattern (20 bp):
ACTTTGGTACCCCTGAATGC
Found at i:37767884 original size:40 final size:40
Alignment explanation
Indices: 37767720--37767878 Score: 176
Period size: 40 Copynumber: 4.0 Consensus size: 40
37767710 AATGTGCCCT
* * *
37767720 TGATTGTACTTTAGTAACCCTGAATGCACATACGTACCCC
1 TGATTGTACTTTGGTACCCCTGAATGCACATACATACCCC
* * *
37767760 T-ACTTGTACTTTGGTACTCCTGAATGCACATAAATGCCCC
1 TGA-TTGTACTTTGGTACCCCTGAATGCACATACATACCCC
* * * ** *
37767800 TGATTGTACTTCGGTACCCCTAAATGCATATATGTGCCCC
1 TGATTGTACTTTGGTACCCCTGAATGCACATACATACCCC
* *
37767840 TGTTTGTACTTTGGTACCCCTGAATGCACTTACATACCC
1 TGATTGTACTTTGGTACCCCTGAATGCACATACATACCC
37767879 TTGTTTATAC
Statistics
Matches: 97, Mismatches: 20, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
39 1 0.01
40 95 0.98
41 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.16, T:0.33
Consensus pattern (40 bp):
TGATTGTACTTTGGTACCCCTGAATGCACATACATACCCC
Found at i:37777482 original size:14 final size:15
Alignment explanation
Indices: 37777463--37777495 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
37777453 CAAGTAAATG
37777463 ATGATACATGAAAA-
1 ATGATACATGAAAAC
*
37777477 ATGATATATGAAAAC
1 ATGATACATGAAAAC
37777492 ATGA
1 ATGA
37777496 GGTGATGATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.55, C:0.06, G:0.15, T:0.24
Consensus pattern (15 bp):
ATGATACATGAAAAC
Found at i:37778661 original size:66 final size:66
Alignment explanation
Indices: 37778555--37778679 Score: 180
Period size: 66 Copynumber: 1.9 Consensus size: 66
37778545 CACAGGCATG
* *
37778555 TGGCATGGCCGTGTGCTCAAGTCAGAGAGTCACACGAGGTCAAACATGACCTGCAGCACTGACTT
1 TGGCATGGCCGTGTGCTCAAGTCAGAGAATCACACGAGGTCAAACACGACCTGCAGCACTGACTT
37778620 A
66 A
* * * *
37778621 TGGCATGGCCGTGTGCTCAAGT-ATATGAATTACACGAGGTCGAACACGGCCTGCAGCAC
1 TGGCATGGCCGTGTGCTCAAGTCAGA-GAATCACACGAGGTCAAACACGACCTGCAGCAC
37778680 GGGAGTGTCC
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
65 2 0.04
66 50 0.96
ACGTcount: A:0.26, C:0.26, G:0.28, T:0.20
Consensus pattern (66 bp):
TGGCATGGCCGTGTGCTCAAGTCAGAGAATCACACGAGGTCAAACACGACCTGCAGCACTGACTT
A
Found at i:37779469 original size:12 final size:12
Alignment explanation
Indices: 37779454--37779478 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
37779444 AAGAGATATC
37779454 AGATTTTTCTGA
1 AGATTTTTCTGA
37779466 AGATTTTTCTGA
1 AGATTTTTCTGA
37779478 A
1 A
37779479 TATATGTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.08, G:0.16, T:0.48
Consensus pattern (12 bp):
AGATTTTTCTGA
Found at i:37784008 original size:46 final size:45
Alignment explanation
Indices: 37783941--37784158 Score: 215
Period size: 46 Copynumber: 4.7 Consensus size: 45
37783931 TTGAGCATCC
*
37783941 GAACTCGTTGAGTTGATTCCGAGTTCACTTATCGATGCAAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTAT-GATGCAAATGTCT
37783987 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTAT-GATGCAAATGTCT
* * * * *
37784033 GAACTCATTGAGTTGAGTCCGAGTTC-GTGA-GATGTAACTAGTCAT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCAAAT-GTC-T
* * * * * * * *
37784078 CCGAACTTGTTCAGTTGAGTCCGAGTTCACTCATAAATGCGAACGCCC
1 --GAACTCGTTGAGTTGAGTCCGAGTTCACTTAT-GATGCAAATGTCT
* *
37784126 GAGCTCGTTGAGTTGAGTCCGAGTTCTCTTATG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATG
37784159 GGCGGGTTAC
Statistics
Matches: 140, Mismatches: 25, Indels: 15
0.78 0.14 0.08
Matches are distributed among these distances:
43 7 0.05
44 3 0.02
45 3 0.02
46 96 0.69
47 23 0.16
48 2 0.01
49 2 0.01
50 4 0.03
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.32
Consensus pattern (45 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCAAATGTCT
Found at i:37787092 original size:15 final size:15
Alignment explanation
Indices: 37787072--37787149 Score: 88
Period size: 15 Copynumber: 5.2 Consensus size: 15
37787062 CATAGTATCG
*
37787072 TATCTTGGGTTTCTT
1 TATCTTGGATTTCTT
*
37787087 TATCTTGGATCTCTT
1 TATCTTGGATTTCTT
37787102 TAT-TCTGGATTTCTT
1 TATCT-TGGATTTCTT
* *
37787117 TAT-TCTGGGTTTCTC
1 TATCT-TGGATTTCTT
37787132 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
37787147 TAT
1 TAT
37787150 TCGGTTTTCT
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
14 1 0.02
15 52 0.96
16 1 0.02
ACGTcount: A:0.12, C:0.15, G:0.15, T:0.58
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:37789607 original size:46 final size:46
Alignment explanation
Indices: 37789551--37789726 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
37789541 TGGTTGAGCA
37789551 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
37789597 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
* *
37789642 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* *
37789690 -CCCAAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
37789727 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 12, Indels: 16
0.80 0.09 0.12
Matches are distributed among these distances:
43 6 0.05
45 8 0.07
46 58 0.53
47 29 0.26
48 4 0.04
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:37789707 original size:93 final size:93
Alignment explanation
Indices: 37789548--37789719 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
37789538 GGATGGTTGA
* *
37789548 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAATGTCCCAACTCGTTGAGT
37789613 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
37789641 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAATG-CCCAAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAATGTCCCAA-CTCGTTGAG
37789705 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
37789720 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 4 0.05
93 71 0.95
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAATGTCCCAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:37791555 original size:37 final size:39
Alignment explanation
Indices: 37791477--37791565 Score: 114
Period size: 37 Copynumber: 2.3 Consensus size: 39
37791467 GCTCCTCGTT
* *
37791477 CAAATGCCTTCGGGACATAGCCCGATTATAGTAATTCGCA
1 CAAATGCCTTC-GGACATAACCCGATTATAGTAACTCGCA
37791517 CAAATGCCTTCGGAC-TAACCCGGA-T-TAGTAACTCGCA
1 CAAATGCCTTCGGACATAACCC-GATTATAGTAACTCGCA
37791554 CAAATG-CTTCGG
1 CAAATGCCTTCGG
37791566 CTTAGCCCGG
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
36 6 0.13
37 17 0.37
38 6 0.13
39 6 0.13
40 11 0.24
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGACATAACCCGATTATAGTAACTCGCA
Found at i:37791575 original size:36 final size:36
Alignment explanation
Indices: 37791505--37791613 Score: 104
Period size: 37 Copynumber: 3.1 Consensus size: 36
37791495 AGCCCGATTA
* *
37791505 TAGTAATTCGCACAAATGCCTTCGGAC-TAACCCGGAT
1 TAGTAACTCGCACAAATG-CTTCGG-CTTAGCCCGGAT
37791542 TAGTAACTCGCACAAATGCTTCGGCTTAGCCCGGA-
1 TAGTAACTCGCACAAATGCTTCGGCTTAGCCCGGAT
* * * *
37791577 -A-TATCTCGCACTAAT-CCTCGGCTTAG-CCGAAT
1 TAGTAACTCGCACAAATGCTTCGGCTTAGCCCGGAT
37791609 TAGTA
1 TAGTA
37791614 TTAGCACAAT
Statistics
Matches: 62, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
31 4 0.06
32 10 0.16
33 13 0.21
34 3 0.05
35 1 0.02
36 14 0.23
37 17 0.27
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (36 bp):
TAGTAACTCGCACAAATGCTTCGGCTTAGCCCGGAT
Found at i:37805144 original size:40 final size:40
Alignment explanation
Indices: 37805061--37805363 Score: 396
Period size: 40 Copynumber: 7.6 Consensus size: 40
37805051 TTGAATGCTG
* * * * * *
37805061 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
37805101 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
37805141 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
37805181 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
37805221 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
37805261 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
37805301 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
37805340 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
37805364 TGAACGAGGA
Statistics
Matches: 241, Mismatches: 19, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 35 0.15
40 198 0.82
41 8 0.03
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:37807910 original size:31 final size:31
Alignment explanation
Indices: 37807851--37807910 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
37807841 TATACATGAA
* *
37807851 ATACATGGAAATGATGGTACATGATATATTG
1 ATACATGGAAATGATGATAAATGATATATTG
*
37807882 ATACATTGAAATGGATGATAAATG-TATAT
1 ATACATGGAAAT-GATGATAAATGATATAT
37807911 GATGAAATGG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 16 0.64
32 9 0.36
ACGTcount: A:0.42, C:0.05, G:0.20, T:0.33
Consensus pattern (31 bp):
ATACATGGAAATGATGATAAATGATATATTG
Found at i:37807930 original size:25 final size:24
Alignment explanation
Indices: 37807888--37807935 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
37807878 ATTGATACAT
*
37807888 TGAAATGGATGATAAATGTATATGA
1 TGAAATGGACGATAAATG-ATATGA
37807913 TGAAATGGTACGAT-AATGATATG
1 TGAAATGG-ACGATAAATGATATG
37807936 TATCATGACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 5 0.24
25 12 0.57
26 4 0.19
ACGTcount: A:0.42, C:0.02, G:0.25, T:0.31
Consensus pattern (24 bp):
TGAAATGGACGATAAATGATATGA
Found at i:37814026 original size:39 final size:39
Alignment explanation
Indices: 37813961--37814105 Score: 209
Period size: 39 Copynumber: 3.7 Consensus size: 39
37813951 CCAACATAAT
* **
37813961 TGCCTTCGGGGACTGAGCCCATATATAACACCAGCACGAA
1 TGCCTTC-GGGACTTAGCCCGGATATAACACCAGCACGAA
* * *
37814001 TGCCTTTGGGATTTAGCCCGGATATAACACCAACACGAA
1 TGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
* *
37814040 TGCCTTCAGGACTTAGGCCGGATATAACACCAGCACGAA
1 TGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
37814079 TGCCTTCGGGACTTAGCCCGGATATAA
1 TGCCTTCGGGACTTAGCCCGGATATAA
37814106 ATCTCACACA
Statistics
Matches: 92, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 86 0.93
40 6 0.07
ACGTcount: A:0.29, C:0.28, G:0.23, T:0.21
Consensus pattern (39 bp):
TGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
Found at i:37819477 original size:16 final size:16
Alignment explanation
Indices: 37819458--37819489 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
37819448 GCTAGGCACG
37819458 AAGGCCCAAATACACA
1 AAGGCCCAAATACACA
37819474 AAGGCCCAAATACACA
1 AAGGCCCAAATACACA
37819490 TTACCGGCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.31, G:0.12, T:0.06
Consensus pattern (16 bp):
AAGGCCCAAATACACA
Found at i:37819517 original size:59 final size:58
Alignment explanation
Indices: 37819416--37819532 Score: 171
Period size: 59 Copynumber: 2.0 Consensus size: 58
37819406 GCTAGGCACG
*
37819416 AAGGCCCGAATACACATCACAGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACACA
1 AAGGCCCAAATACACATCACAGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACACA
* * ** *
37819474 AAGGCCCAAATACACATTACCGGCACTCAGCCTGCTAGGCACGAAGGCCCGAATACACA
1 AAGGCCCAAATACACATCA-CAGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACACA
37819533 TCACCGGCAC
Statistics
Matches: 52, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
58 17 0.33
59 35 0.67
ACGTcount: A:0.36, C:0.33, G:0.21, T:0.10
Consensus pattern (58 bp):
AAGGCCCAAATACACATCACAGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACACA
Found at i:37819522 original size:43 final size:43
Alignment explanation
Indices: 37819474--37819571 Score: 169
Period size: 43 Copynumber: 2.3 Consensus size: 43
37819464 CAAATACACA
* * *
37819474 AAGGCCCAAATACACATTACCGGCACTCAGCCTGCTAGGCACG
1 AAGGCCCGAATACACATCACCGGCACTAAGCCTGCTAGGCACG
37819517 AAGGCCCGAATACACATCACCGGCACTAAGCCTGCTAGGCACG
1 AAGGCCCGAATACACATCACCGGCACTAAGCCTGCTAGGCACG
37819560 AAGGCCCGAATA
1 AAGGCCCGAATA
37819572 TAATACCAGC
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 52 1.00
ACGTcount: A:0.32, C:0.34, G:0.22, T:0.12
Consensus pattern (43 bp):
AAGGCCCGAATACACATCACCGGCACTAAGCCTGCTAGGCACG
Done.