Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 118 of 255
Found at i:37819617 original size:38 final size:38
Alignment explanation
Indices: 37819564--37819637 Score: 112
Period size: 38 Copynumber: 1.9 Consensus size: 38
37819554 GGCACGAAGG
***
37819564 CCCGAATATAATACCAGCACTTGGCCTGCGGGATTTGT
1 CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTGT
*
37819602 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
1 CCCGAATATAATACCAGCACGAAGCCTGCGGGATTT
37819638 AACTCGAATA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 32 1.00
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.23
Consensus pattern (38 bp):
CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTGT
Found at i:37824850 original size:39 final size:39
Alignment explanation
Indices: 37824796--37824935 Score: 226
Period size: 39 Copynumber: 3.6 Consensus size: 39
37824786 CATAATTGCA
* *
37824796 TTCGGGACTTAGCCCGAATATAACACCAGCACGAATGCC
1 TTCGGGACTTAGCCCGGATATAACACCAGCATGAATGCC
*
37824835 TTCGGGATTTAGCCCGGATATAACACCAGCATGAATGCC
1 TTCGGGACTTAGCCCGGATATAACACCAGCATGAATGCC
*
37824874 TTCGGGACTTAGCCCGGATATAACACCAGTATGAATGCC
1 TTCGGGACTTAGCCCGGATATAACACCAGCATGAATGCC
* *
37824913 TTCGGGACTTACCCCAGATATAA
1 TTCGGGACTTAGCCCGGATATAA
37824936 ATCTCACACA
Statistics
Matches: 94, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 94 1.00
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.22
Consensus pattern (39 bp):
TTCGGGACTTAGCCCGGATATAACACCAGCATGAATGCC
Found at i:37825279 original size:13 final size:13
Alignment explanation
Indices: 37825261--37825289 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
37825251 CAAATCATAA
37825261 ACTAAGTTCCATT
1 ACTAAGTTCCATT
37825274 ACTAAGTTCCATT
1 ACTAAGTTCCATT
37825287 ACT
1 ACT
37825290 CAAAGACTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (13 bp):
ACTAAGTTCCATT
Found at i:37839358 original size:55 final size:54
Alignment explanation
Indices: 37839289--37839543 Score: 238
Period size: 55 Copynumber: 4.8 Consensus size: 54
37839279 ATTAGGGTTT
* *
37839289 AAGGATACCATGTAAGACCTTGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTTCATAAGGC
* * * * *
37839344 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-TCATAAGGC
* * * * *
37839399 AAAGG-TCCCTTGTAAAACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGGC
* * *
37839452 AAGGATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTTTC--AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGGC
* * * * *
37839501 AAGGATACCACGTAAGACCATGACAAGTCATGGAAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
37839544 GTACCCGTGT
Statistics
Matches: 165, Mismatches: 30, Indels: 16
0.78 0.14 0.08
Matches are distributed among these distances:
49 38 0.23
52 6 0.04
53 41 0.25
54 12 0.07
55 64 0.39
56 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGGC
Found at i:37839495 original size:108 final size:110
Alignment explanation
Indices: 37839299--37839496 Score: 294
Period size: 108 Copynumber: 1.8 Consensus size: 110
37839289 AAGGATACCA
* * *
37839299 TGTAAGACCTTGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGACCA
1 TGTAAAACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
*
37839364 TGTCAAGACATGGCATTGATAAGTTACCATAAGGCAAAGGTCCCT
66 TGTCAAGACATGGCAATGATAAGTTACCATAAGGCAAAGGTCCCT
* *
37839409 TGTAAAACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAGACC
1 TGTAAAACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAGACC
* *
37839471 ATGTCGAGACATGGCAATGGTAAGTT
65 ATGTCAAGACATGGCAATGATAAGTT
37839497 TCAAAAGGAT
Statistics
Matches: 79, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.59
109 7 0.09
110 22 0.28
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.23
Consensus pattern (110 bp):
TGTAAAACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
TGTCAAGACATGGCAATGATAAGTTACCATAAGGCAAAGGTCCCT
Found at i:37839638 original size:23 final size:24
Alignment explanation
Indices: 37839612--37839656 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
37839602 AAGGTAAGGT
*
37839612 AAGGTAAGACTAGTT-ATGCTAAA
1 AAGGTAAGACAAGTTCATGCTAAA
37839635 AAGGTAAGACAAGTTCATGCTA
1 AAGGTAAGACAAGTTCATGCTA
37839657 GAAGAGCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.42, C:0.11, G:0.22, T:0.24
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATGCTAAA
Found at i:37839756 original size:16 final size:16
Alignment explanation
Indices: 37839735--37839765 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
37839725 ATAAATTTGA
37839735 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
37839751 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
37839766 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:37844095 original size:15 final size:13
Alignment explanation
Indices: 37844063--37844094 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
37844053 AAATTGGGAT
37844063 CACACAGCCAAGG
1 CACACAGCCAAGG
37844076 CACACAGCCAAGG
1 CACACAGCCAAGG
37844089 CACACA
1 CACACA
37844095 CCAGTGTGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.41, C:0.41, G:0.19, T:0.00
Consensus pattern (13 bp):
CACACAGCCAAGG
Found at i:37852346 original size:31 final size:31
Alignment explanation
Indices: 37852303--37852478 Score: 275
Period size: 31 Copynumber: 5.7 Consensus size: 31
37852293 TTAGTCTTGA
*
37852303 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
37852333 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* *
37852364 TATATCACTGGGCTGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* *
37852395 TATATCACTGGGCTGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* *
37852426 TATATCACTGGGCTGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
37852457 CATATCACT-GGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
37852479 ACTGTAAGCG
Statistics
Matches: 140, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
30 17 0.12
31 123 0.88
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.32
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:37852719 original size:25 final size:24
Alignment explanation
Indices: 37852670--37852768 Score: 83
Period size: 25 Copynumber: 4.0 Consensus size: 24
37852660 TGCTTTATCA
**
37852670 TATAACTGGAGGCCTAGCCTCTTTTT
1 TATAACTGG-GGCAAAGCC-CTTTTT
*
37852696 AATAACTGGGGCAAAGCCCTTTTT
1 TATAACTGGGGCAAAGCCCTTTTT
* * *
37852720 GATAAATTGGGGCAAAGCCCTTTTCGG
1 TAT-AACTGGGGCAAAGCCCTTTT--T
*
37852747 TA-AACTGGGGCATAGCCCTTTT
1 TATAACTGGGGCAAAGCCCTTTT
37852769 AGCAGTTCCT
Statistics
Matches: 61, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
24 8 0.13
25 44 0.72
26 8 0.13
27 1 0.02
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.31
Consensus pattern (24 bp):
TATAACTGGGGCAAAGCCCTTTTT
Found at i:37853699 original size:27 final size:27
Alignment explanation
Indices: 37853669--37853776 Score: 85
Period size: 27 Copynumber: 3.9 Consensus size: 27
37853659 GTAAATCTAC
37853669 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
37853696 AAACCAAAGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* * **
37853722 AGAAAGTCAATGGTATTTTTGTAATTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
* * **
37853752 AAATCAGGGGTATTTTGGTAATTTT
1 AAACCAAGGGTATTTCAGTAATTTT
37853777 ACAAATTGAG
Statistics
Matches: 67, Mismatches: 8, Indels: 12
0.77 0.09 0.14
Matches are distributed among these distances:
26 1 0.01
27 41 0.61
28 7 0.10
29 17 0.25
30 1 0.01
ACGTcount: A:0.32, C:0.07, G:0.18, T:0.43
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:37853782 original size:27 final size:26
Alignment explanation
Indices: 37853733--37853878 Score: 166
Period size: 27 Copynumber: 5.4 Consensus size: 26
37853723 GAAAGTCAAT
* **
37853733 GGTATTTTTGTAATTTTGTAAATCAGG
1 GGTATTTTGGTAATTTTACAAA-CAGG
**
37853760 GGTATTTTGGTAATTTTACAAATTGAG
1 GGTATTTTGGTAATTTTACAAACAG-G
* * *
37853787 GGTATTTCGGTAATTTCACAAACCAGT
1 GGTATTTTGGTAATTTTACAAA-CAGG
37853814 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAAC-AGG
*
37853841 CGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAAC-AGG
37853868 GGTATTTTGGT
1 GGTATTTTGGT
37853879 TATTCTATCC
Statistics
Matches: 101, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
26 2 0.02
27 98 0.97
28 1 0.01
ACGTcount: A:0.27, C:0.08, G:0.22, T:0.42
Consensus pattern (26 bp):
GGTATTTTGGTAATTTTACAAACAGG
Found at i:37853818 original size:54 final size:54
Alignment explanation
Indices: 37853756--37853878 Score: 185
Period size: 54 Copynumber: 2.3 Consensus size: 54
37853746 TTTTGTAAAT
*
37853756 CAGGGGTATTTTGGTAATTTTACAAATTGAGG-GTATTTCGGTAATTTCACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAACT-AGGCGTATTTCGGTAATTTCACAAAC
* * *
37853810 CAGTGGTATTTTGGTAATTTTACAAACTAGGCGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAACTAGGCGTATTTCGGTAATTTCACAAAC
*
37853864 TAGGGGTATTTTGGT
1 CAGGGGTATTTTGGT
37853879 TATTCTATCC
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
53 3 0.05
54 59 0.95
ACGTcount: A:0.28, C:0.10, G:0.23, T:0.40
Consensus pattern (54 bp):
CAGGGGTATTTTGGTAATTTTACAAACTAGGCGTATTTCGGTAATTTCACAAAC
Found at i:37853900 original size:54 final size:54
Alignment explanation
Indices: 37853756--37853915 Score: 171
Period size: 54 Copynumber: 3.0 Consensus size: 54
37853746 TTTTGTAAAT
* * *
37853756 CAGGGGTATTTTGGTAATTTTACAAATTGAGG-GTATTTCGGTAATTTCACAAAC
1 CAGGGGTATTTTGGTAATTCTACAAACT-AGGAGTATTTTGGTAATTTCACAAAC
* * * *
37853810 CAGTGGTATTTTGGTAATTTTACAAACTAGGCGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTCTACAAACTAGGAGTATTTTGGTAATTTCACAAAC
* * ** * *
37853864 TAGGGGTATTTTGGTTATTCTATCCTAC-ATGAGTATTTTAGTAATTTCACAA
1 CAGGGGTATTTTGGTAATTCTA-CAAACTAGGAGTATTTTGGTAATTTCACAA
37853916 TCGAGGGTAA
Statistics
Matches: 90, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
53 3 0.03
54 84 0.93
55 3 0.03
ACGTcount: A:0.29, C:0.11, G:0.19, T:0.41
Consensus pattern (54 bp):
CAGGGGTATTTTGGTAATTCTACAAACTAGGAGTATTTTGGTAATTTCACAAAC
Found at i:37854067 original size:54 final size:54
Alignment explanation
Indices: 37853914--37854073 Score: 221
Period size: 54 Copynumber: 3.0 Consensus size: 54
37853904 GTAATTTCAC
* * * * *
37853914 AATCGAGGGTAAAACGGTAATTTTGTAAATTGAGGGTAAAATGATAATTCTATA
1 AATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTATA
* *
37853968 AATCAAAGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTATA
1 AATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTATA
* ***
37854022 AATCAAGGGTAAAGCGGTAATTCTGTAAATCGAGGGTACTTTGGTAATTTTA
1 AATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTA
37854074 CAAGTCGAGG
Statistics
Matches: 93, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 93 1.00
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.32
Consensus pattern (54 bp):
AATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTATA
Found at i:37854070 original size:27 final size:27
Alignment explanation
Indices: 37853914--37854059 Score: 184
Period size: 27 Copynumber: 5.4 Consensus size: 27
37853904 GTAATTTCAC
* *
37853914 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* * *
37853941 AATTGAGGGTAAAATGATAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* *
37853968 AATCAAAGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* *
37853995 AATCGAGGGTAAAATGGTAATTTTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* **
37854022 AATCAAGGGTAAAGCGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
37854049 AATCGAGGGTA
1 AATCGAGGGTA
37854060 CTTTGGTAAT
Statistics
Matches: 99, Mismatches: 20, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 99 1.00
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTGTA
Found at i:37854082 original size:81 final size:80
Alignment explanation
Indices: 37853904--37854084 Score: 202
Period size: 81 Copynumber: 2.2 Consensus size: 80
37853894 GAGTATTTTA
* * ** *
37853904 GTAATTTCACAATCGAGGGTAAAACGGTAATTTTGTAAATTGAGGGTAAAATGATAATTCTATAA
1 GTAATTTTACAATCGAGGGTAAAACGGTAATTTTATAAATCAAGGGTAAAACGATAATTCTATAA
37853969 ATCAAAGGTAAAATG
66 ATCAAAGGTAAAATG
* * * *
37853984 GTAATTCTGTA-AATCGAGGGTAAAATGGTAATTTTATAAATCAAGGGTAAAGCGGTAATTCTGT
1 GTAATT-T-TACAATCGAGGGTAAAACGGTAATTTTATAAATCAAGGGTAAAACGATAATTCTAT
* * ***
37854048 AAATCGAGGGTACTTTG
64 AAATCAAAGGTAAAATG
37854065 GTAATTTTACAAGTCGAGGG
1 GTAATTTTACAA-TCGAGGG
37854085 CATTTCAATA
Statistics
Matches: 83, Mismatches: 14, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
79 2 0.02
80 9 0.11
81 71 0.86
82 1 0.01
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (80 bp):
GTAATTTTACAATCGAGGGTAAAACGGTAATTTTATAAATCAAGGGTAAAACGATAATTCTATAA
ATCAAAGGTAAAATG
Found at i:37854301 original size:9 final size:8
Alignment explanation
Indices: 37854273--37854302 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
37854263 TATCCAATTG
37854273 GGCCCGTA
1 GGCCCGTA
37854281 GGCCCGTA
1 GGCCCGTA
37854289 GGCCCGTTA
1 GGCCCG-TA
37854298 GGCCC
1 GGCCC
37854303 ACATAGCCCC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 14 0.67
9 7 0.33
ACGTcount: A:0.10, C:0.40, G:0.37, T:0.13
Consensus pattern (8 bp):
GGCCCGTA
Found at i:37856366 original size:24 final size:23
Alignment explanation
Indices: 37856329--37856379 Score: 84
Period size: 24 Copynumber: 2.2 Consensus size: 23
37856319 TTAGTCTTGA
*
37856329 CATATACTGGGCCGAAGCCTTTT
1 CATATACTAGGCCGAAGCCTTTT
37856352 CATATCACTAGGCCGAAGCCTTTT
1 CATAT-ACTAGGCCGAAGCCTTTT
37856376 CATA
1 CATA
37856380 AATCATATCA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
23 5 0.19
24 21 0.81
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.29
Consensus pattern (23 bp):
CATATACTAGGCCGAAGCCTTTT
Found at i:37856429 original size:30 final size:31
Alignment explanation
Indices: 37856351--37856435 Score: 154
Period size: 31 Copynumber: 2.8 Consensus size: 31
37856341 CGAAGCCTTT
37856351 TCATATCACTAGGCCGAAGCCTTTTCATAAA
1 TCATATCACTAGGCCGAAGCCTTTTCATAAA
*
37856382 TCATATCACTGGGCCGAAGCCTTTTCATAAA
1 TCATATCACTAGGCCGAAGCCTTTTCATAAA
37856413 TCATATCACT-GGCCGAAGCCTTT
1 TCATATCACTAGGCCGAAGCCTTT
37856436 ACTGTAAGCG
Statistics
Matches: 53, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
30 13 0.25
31 40 0.75
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (31 bp):
TCATATCACTAGGCCGAAGCCTTTTCATAAA
Found at i:37856676 original size:25 final size:25
Alignment explanation
Indices: 37856642--37856700 Score: 84
Period size: 25 Copynumber: 2.4 Consensus size: 25
37856632 CTGGAGGCCT
*
37856642 AGCCTCTTTTTAATAA-CTGGGGCAG
1 AGCC-CTTTTTAATAAGCTGGGGCAA
*
37856667 AGCCCTTTTTGATAAGCTGGGGCAA
1 AGCCCTTTTTAATAAGCTGGGGCAA
37856692 AGCCCTTTT
1 AGCCCTTTT
37856701 CGGTAAACTG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 10 0.32
25 21 0.68
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.32
Consensus pattern (25 bp):
AGCCCTTTTTAATAAGCTGGGGCAA
Found at i:37856711 original size:25 final size:25
Alignment explanation
Indices: 37856656--37856725 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 25
37856646 TCTTTTTAAT
* *
37856656 AACTGGGGCAGAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
37856681 AGCTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
37856706 AACTGGGGCATATCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
37856726 AGCACTTCCT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.29
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:37863175 original size:45 final size:47
Alignment explanation
Indices: 37863112--37863213 Score: 113
Period size: 45 Copynumber: 2.2 Consensus size: 47
37863102 GGCTATCCGG
* *
37863112 AGCTCCTTGA-TAATAACTCTTCA-GAGTTACCTGTTAAGCTC-AATA
1 AGCTTCTTGATTAATAACTCTT-ATGAGTTACCTATTAAGCTCGAATA
* * *
37863157 AGTTTCTTGATTAA-AACTCTTATGAGTTTCCTATTTAGCTCGAATA
1 AGCTTCTTGATTAATAACTCTTATGAGTTACCTATTAAGCTCGAATA
*
37863203 AGCTTCCTGAT
1 AGCTTCTTGAT
37863214 ACATGGCTCA
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
44 1 0.02
45 30 0.64
46 16 0.34
ACGTcount: A:0.28, C:0.20, G:0.14, T:0.38
Consensus pattern (47 bp):
AGCTTCTTGATTAATAACTCTTATGAGTTACCTATTAAGCTCGAATA
Found at i:37865573 original size:22 final size:19
Alignment explanation
Indices: 37865548--37865589 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 19
37865538 TGATAATCAT
37865548 TAATATATAATTATATCTATTA
1 TAATATAT-ATTA-AT-TATTA
37865570 TAATATATATTAATTATTA
1 TAATATATATTAATTATTA
37865589 T
1 T
37865590 GAACTTTGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 2 0.10
21 4 0.20
22 8 0.40
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (19 bp):
TAATATATATTAATTATTA
Found at i:37868700 original size:13 final size:13
Alignment explanation
Indices: 37868682--37868708 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
37868672 GTTCAGCAAG
37868682 GACACGCCCGTGT
1 GACACGCCCGTGT
37868695 GACACGCCCGTGT
1 GACACGCCCGTGT
37868708 G
1 G
37868709 CGATTACTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:37870710 original size:43 final size:43
Alignment explanation
Indices: 37870608--37870731 Score: 122
Period size: 43 Copynumber: 2.9 Consensus size: 43
37870598 GGAATTAAGA
* * * ** *
37870608 AATCTGAGCTCGTTGAGCGGTCCGAGTTCTTGATATATGTGAG
1 AATCCGAGCTCGTTGAGTGGTCCGAGTTCTTAATGGATGCGAG
* * ** * *
37870651 AATTCGAACTTATTGAGTAGTCCGAGTTCTTTATGGATGCGAG
1 AATCCGAGCTCGTTGAGTGGTCCGAGTTCTTAATGGATGCGAG
* *
37870694 CATCCGAGCTCGTTGAGTGGTCCGAGTTCATAATGGAT
1 AATCCGAGCTCGTTGAGTGGTCCGAGTTCTTAATGGAT
37870732 CCGATACATG
Statistics
Matches: 62, Mismatches: 19, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
43 62 1.00
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (43 bp):
AATCCGAGCTCGTTGAGTGGTCCGAGTTCTTAATGGATGCGAG
Found at i:37871052 original size:14 final size:14
Alignment explanation
Indices: 37871033--37871063 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
37871023 TGGATAGTTG
37871033 AAGAAAGGCTAAGA
1 AAGAAAGGCTAAGA
*
37871047 AAGAAAGGTTAAGA
1 AAGAAAGGCTAAGA
37871061 AAG
1 AAG
37871064 GTTAAAATAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.58, C:0.03, G:0.29, T:0.10
Consensus pattern (14 bp):
AAGAAAGGCTAAGA
Found at i:37872910 original size:21 final size:20
Alignment explanation
Indices: 37872872--37872911 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
37872862 TGTGTGACTT
*
37872872 TGAAAATCCATTAAAATTTG
1 TGAAAATCAATTAAAATTTG
*
37872892 TGAAAATCTAATTAGAATTT
1 TGAAAATC-AATTAAAATTT
37872912 AATGAAATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.45, C:0.07, G:0.10, T:0.38
Consensus pattern (20 bp):
TGAAAATCAATTAAAATTTG
Found at i:37876731 original size:85 final size:85
Alignment explanation
Indices: 37876588--37876766 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
37876578 GGCCGGCCAT
37876588 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
37876653 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
37876673 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
37876738 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
37876758 GGGCATGGG
1 GAGCATGGG
37876767 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:37878086 original size:47 final size:47
Alignment explanation
Indices: 37878032--37878726 Score: 1061
Period size: 47 Copynumber: 14.6 Consensus size: 47
37878022 TATTTGAATA
*
37878032 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
37878079 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
37878128 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
37878175 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
37878224 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
37878271 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
37878320 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
37878367 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
37878414 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
37878463 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
37878510 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* ** * *
37878559 AATGTGAACA-TGTGTACGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * *
37878606 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
37878653 AATGTGAAAGTGTATATATGTGATAAGGCCGAATAGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
37878700 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
37878727 TCCCGAAGGG
Statistics
Matches: 613, Mismatches: 23, Indels: 24
0.93 0.03 0.04
Matches are distributed among these distances:
46 1 0.00
47 381 0.62
49 230 0.38
50 1 0.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:37878140 original size:96 final size:94
Alignment explanation
Indices: 37878032--37878726 Score: 1061
Period size: 96 Copynumber: 7.3 Consensus size: 94
37878022 TATTTGAATA
*
37878032 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
37878097 TATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
*
37878128 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
37878193 TATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
*
37878224 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
37878289 TATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
*
37878320 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
37878385 TGTGATAAGGCCTAATGGCCGATGTGATG
66 TGTGATAAGGCCTAATGGCCGATGTGATG
37878414 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* *
37878479 TATGTGATAAGGCCGAATGGCCAATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
37878510 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGT
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA-AGTGTAT
** * *
37878574 ACGTGTGATAAGGCCGAATGGCCAATGTGATG
63 ATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * *
37878606 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 AATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * *
37878670 ATGTGATAAGGCCGAATAGCCAATGTGATG
65 ATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
37878700 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
37878727 TCCCGAAGGG
Statistics
Matches: 568, Mismatches: 25, Indels: 14
0.94 0.04 0.02
Matches are distributed among these distances:
93 2 0.00
94 141 0.25
96 423 0.74
97 2 0.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.29
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:37878351 original size:143 final size:143
Alignment explanation
Indices: 37878032--37878726 Score: 1082
Period size: 143 Copynumber: 4.9 Consensus size: 143
37878022 TATTTGAATA
37878032 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--TATA
*
37878097 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTA
64 TATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
*
37878160 ATAGCCGATGTGATG
129 ATGGCCGATGTGATG
*
37878175 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATA
37878240 TATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
64 TATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
37878305 ATGGCCGATGTGATG
129 ATGGCCGATGTGATG
* *
37878320 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
*
37878385 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
66 TGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
37878450 GGCCGATGTGATG
131 GGCCGATGTGATG
*
37878463 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--TATA
* * ** *
37878528 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG--TGTACGTGTGATAAGGCCG
64 TATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAA-AGTGTATATATATGTGATAAGGCCT
*
37878590 AATGGCCAATGTGATG
128 AATGGCCGATGTGATG
* * *
37878606 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 AATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATAT
* * * *
37878670 ATGTGATAAGGCCGAATAGCCAATGTGATGGATGTGGAAGTGTATA-A-ATGTGATAAG
65 ATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
37878727 TCCCGAAGGG
Statistics
Matches: 519, Mismatches: 22, Indels: 24
0.92 0.04 0.04
Matches are distributed among these distances:
140 1 0.00
141 51 0.10
142 1 0.00
143 329 0.63
144 1 0.00
145 135 0.26
146 1 0.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.29
Consensus pattern (143 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
GGCCGATGTGATG
Found at i:37881349 original size:40 final size:40
Alignment explanation
Indices: 37881284--37881524 Score: 322
Period size: 40 Copynumber: 6.0 Consensus size: 40
37881274 AGGTCTCGAC
*
37881284 GATG-ATCCGGGCTAAGTCCCAAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
37881323 GATGTATTCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
37881363 GATGTATCCGAGCTAAGTTCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
37881403 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * ** * *
37881443 GATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * * *
37881483 GTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
37881523 GA
1 GA
37881525 CGTGTATTCG
Statistics
Matches: 180, Mismatches: 21, Indels: 1
0.89 0.10 0.00
Matches are distributed among these distances:
39 4 0.02
40 176 0.98
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:37882924 original size:85 final size:85
Alignment explanation
Indices: 37882781--37882959 Score: 340
Period size: 85 Copynumber: 2.1 Consensus size: 85
37882771 GGCCGGCCAT
37882781 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
37882846 GTAAGGAATAATAAAATAAA
66 GTAAGGAATAATAAAATAAA
37882866 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
*
37882931 GTAAGGATTAATAAAATAAA
66 GTAAGGAATAATAAAATAAA
*
37882951 GGGCATGGG
1 GAGCATGGG
37882960 CAATAAAATA
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.38, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGAATAATAAAATAAA
Found at i:37884279 original size:47 final size:47
Alignment explanation
Indices: 37884225--37884917 Score: 1057
Period size: 47 Copynumber: 14.6 Consensus size: 47
37884215 TATTTGAATA
*
37884225 AATGTGAAAGTGTATATATGTGAGAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
37884272 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
37884321 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
37884368 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
37884415 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
37884462 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
37884511 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
37884558 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
37884605 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
37884654 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
37884701 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
* ** * *
37884750 AATGTGAACA-TGTGTACGTGTGATAAGGCCGAGTGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* * *
37884797 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
37884844 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* * *
37884891 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
37884918 TCCCGAAGGG
Statistics
Matches: 609, Mismatches: 27, Indels: 20
0.93 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 425 0.70
49 182 0.30
50 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
Found at i:37884483 original size:143 final size:143
Alignment explanation
Indices: 37884225--37884917 Score: 1087
Period size: 143 Copynumber: 4.9 Consensus size: 143
37884215 TATTTGAATA
*
37884225 AATGTGAAAGTGTATATATGTGAGAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--TATA
* *
37884290 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTA
64 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
*
37884353 ATAGCCGATGTGATG
129 ATGGCCGATGTGATG
*
37884368 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
37884433 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
66 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
37884498 GGCCGATGTGATG
131 GGCCGATGTGATG
* *
37884511 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* *
37884576 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
66 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
37884641 GGCCGATGTGATG
131 GGCCGATGTGATG
*
37884654 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--TATA
* ** *
37884719 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG--TGTACGTGTGATAAGGCCG
64 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATATATATGTGATAAGGCCT
* *
37884781 AGTGGCCAATGTGATG
128 AATGGCCGATGTGATG
* * *
37884797 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 AATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATAT
* *
37884861 ATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAAGTGTATA-A-ATGTGATAAG
65 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
37884918 TCCCGAAGGG
Statistics
Matches: 516, Mismatches: 25, Indels: 20
0.92 0.04 0.04
Matches are distributed among these distances:
140 1 0.00
141 97 0.19
142 1 0.00
143 372 0.72
144 1 0.00
145 43 0.08
146 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (143 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
GGCCGATGTGATG
Found at i:37884548 original size:190 final size:188
Alignment explanation
Indices: 37884225--37884917 Score: 1084
Period size: 190 Copynumber: 3.6 Consensus size: 188
37884215 TATTTGAATA
* *
37884225 AATGTGAAAGTGTATATATGTGAGAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATA
* *
37884290 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
64 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
37884355 AGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
129 AGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
37884415 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATA
* *
37884480 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
64 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
37884545 AGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
129 AGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
37884605 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
37884670 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGA
64 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTA
* * * ** * * *
37884735 ATGGCCAATGTGATGAATGTGAACA-TGTGTACGTGTGATAAGGCCGAGTGGCCAATGTGATG
127 ATAGCCGATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
37884797 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
* * *
37884861 ATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAAGTGTATAAATGTGATAAG
65 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
37884918 TCCCGAAGGG
Statistics
Matches: 475, Mismatches: 22, Indels: 14
0.93 0.04 0.03
Matches are distributed among these distances:
188 14 0.03
190 333 0.70
192 126 0.27
193 2 0.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (188 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAG
CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:37903058 original size:42 final size:42
Alignment explanation
Indices: 37903011--37903144 Score: 250
Period size: 42 Copynumber: 3.2 Consensus size: 42
37903001 TGGCCCTTAG
*
37903011 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
*
37903053 GCCCATTTCAATATCATATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
37903095 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
37903137 GCCCATTT
1 GCCCATTT
37903145 GGGGAGACTA
Statistics
Matches: 89, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 89 1.00
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:37903343 original size:25 final size:24
Alignment explanation
Indices: 37903301--37903348 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
37903291 TAACTGGGGC
37903301 AAAGCCCTTTCTGATAAACCAGGGA
1 AAAGCCCTTTCTGATAAA-CAGGGA
*
37903326 AAAGCCCTTT-TCGGTAAACAGGG
1 AAAGCCCTTTCT-GATAAACAGGG
37903349 GCAGAGCCCT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 6 0.29
25 15 0.71
ACGTcount: A:0.33, C:0.23, G:0.23, T:0.21
Consensus pattern (24 bp):
AAAGCCCTTTCTGATAAACAGGGA
Found at i:37904201 original size:27 final size:26
Alignment explanation
Indices: 37904171--37904247 Score: 75
Period size: 26 Copynumber: 2.9 Consensus size: 26
37904161 AGGCATATTC
*
37904171 GTCATTTTACCATATAAGGGTATTACG
1 GTCATTTTACC-TATAGGGGTATTACG
* * *
37904198 GTCACTTTACCCTACAGGGGT-TTATG
1 GTCATTTTA-CCTATAGGGGTATTACG
*
37904224 GTCTTTTTACCTATTAGGGGTATT
1 GTCATTTTACCTA-TAGGGGTATT
37904248 TTAGTCATTT
Statistics
Matches: 40, Mismatches: 7, Indels: 6
0.75 0.13 0.11
Matches are distributed among these distances:
25 4 0.10
26 17 0.43
27 17 0.43
28 2 0.05
ACGTcount: A:0.22, C:0.17, G:0.21, T:0.40
Consensus pattern (26 bp):
GTCATTTTACCTATAGGGGTATTACG
Found at i:37904318 original size:27 final size:27
Alignment explanation
Indices: 37904265--37904474 Score: 127
Period size: 27 Copynumber: 7.7 Consensus size: 27
37904255 TTTCATCCTA
* * * * *
37904265 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAC
* *
37904292 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAC
* ** * *
37904319 CAATGGTATTTCTATAATTTTTAGAAAGT
1 CAAGGGTATTTCGGTAA-TTTTATAAA-C
* ** * *
37904348 TAAGGGTATTTTTGTAATTTTGTAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAC
* * * *
37904375 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAC
** *
37904402 TGAGGGTATTTCGGTAATTTCATAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAC
*
37904429 C-AGTGGTATTTCGGTAATTTTACAAA-
1 CAAG-GGTATTTCGGTAATTTTATAAAC
* *
37904455 CTAGAGGTATTTTGGTAATT
1 CAAG-GGTATTTCGGTAATT
37904475 CTATCCTACA
Statistics
Matches: 143, Mismatches: 36, Indels: 8
0.76 0.19 0.04
Matches are distributed among these distances:
26 3 0.02
27 113 0.79
28 14 0.10
29 13 0.09
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTCGGTAATTTTATAAAC
Found at i:37904437 original size:54 final size:53
Alignment explanation
Indices: 37904294--37904474 Score: 184
Period size: 54 Copynumber: 3.3 Consensus size: 53
37904284 CTACAAACCA
* * * *
37904294 AGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCT-ATAATTTTTAGAAAGTT
1 AGGGTATTTCGGTAATTTTGTAAACCAGTGGTATTT-TGGTAA-TTTTACAAA-TT
** * *
37904349 AAGGGTATTTTTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATT
1 -AGGGTATTTCGGTAATTTTGTAAACCAGTGGTATTTTGGTAATTTTACAAATT
** * *
37904403 GAGGGTATTTCGGTAATTTCATAAACCAGTGGTATTTCGGTAATTTTACAAACT
1 -AGGGTATTTCGGTAATTTTGTAAACCAGTGGTATTTTGGTAATTTTACAAATT
*
37904457 AGAGGTATTTTGGTAATT
1 AG-GGTATTTCGGTAATT
37904475 CTATCCTACA
Statistics
Matches: 106, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
53 2 0.02
54 61 0.58
55 9 0.08
56 34 0.32
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.43
Consensus pattern (53 bp):
AGGGTATTTCGGTAATTTTGTAAACCAGTGGTATTTTGGTAATTTTACAAATT
Found at i:37904491 original size:54 final size:54
Alignment explanation
Indices: 37904294--37904516 Score: 159
Period size: 54 Copynumber: 4.1 Consensus size: 54
37904284 CTACAAACCA
* ** ** ** *
37904294 AGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCTATAATTTTTAGAAAGTTA-
1 AGGGTATTTCGGTAATTTCATAAACCAGGGGTATTTCGGTAA-TTTTACAAA--TAG
** ** * * *
37904350 AGGGTATTTTTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTCATAAACCAGGGGTATTTCGGTAATTTTACAAATAG
*
37904404 AGGGTATTTCGGTAATTTCATAAACCAGTGGTATTTCGGTAATTTTACAAACTAG
1 AGGGTATTTCGGTAATTTCATAAACCAGGGGTATTTCGGTAATTTTACAAA-TAG
* ** * * *
37904459 A-GGTATTTTGGTAA-TTC-TATCCTACAGGGGTATTTCAGTAATTTCAC-AATCG
1 AGGGTATTTCGGTAATTTCATAAAC--CAGGGGTATTTCGGTAATTTTACAAATAG
37904511 AGGGTA
1 AGGGTA
37904517 AAATGGTAAT
Statistics
Matches: 137, Mismatches: 25, Indels: 13
0.78 0.14 0.07
Matches are distributed among these distances:
52 6 0.04
53 10 0.07
54 76 0.55
55 11 0.08
56 34 0.25
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.40
Consensus pattern (54 bp):
AGGGTATTTCGGTAATTTCATAAACCAGGGGTATTTCGGTAATTTTACAAATAG
Found at i:37904514 original size:27 final size:26
Alignment explanation
Indices: 37904372--37904514 Score: 85
Period size: 27 Copynumber: 5.3 Consensus size: 26
37904362 TAATTTTGTA
* *
37904372 AATCAGGGGTATTTTGGTAATTTTAC
1 AATCAGGGGTATTTCGGTAATTTCAC
* *
37904398 AAAT-TGAGGGTATTTCGGTAATTTCATA
1 -AATCAG-GGGTATTTCGGTAATTTCA-C
* * *
37904426 AACCAGTGGTATTTCGGTAATTTTAC
1 AATCAGGGGTATTTCGGTAATTTCAC
* * *
37904452 AAACTAGAGGTATTTTGGTAA-TTCTATC
1 AATC-AGGGGTATTTCGGTAATTTC-A-C
* *
37904480 -CTACAGGGGTATTTCAGTAATTTCAC
1 AAT-CAGGGGTATTTCGGTAATTTCAC
37904506 AATCGAGGG
1 AATC-AGGG
37904515 TAAAATGGTA
Statistics
Matches: 87, Mismatches: 19, Indels: 20
0.69 0.15 0.16
Matches are distributed among these distances:
26 8 0.09
27 73 0.84
28 6 0.07
ACGTcount: A:0.29, C:0.12, G:0.22, T:0.37
Consensus pattern (26 bp):
AATCAGGGGTATTTCGGTAATTTCAC
Found at i:37904540 original size:27 final size:27
Alignment explanation
Indices: 37904506--37904703 Score: 263
Period size: 27 Copynumber: 7.3 Consensus size: 27
37904496 GTAATTTCAC
*
37904506 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
*
37904533 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTCTGTA
**
37904560 AATCGAGGGTAAAGCGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* *
37904587 AATCAAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* *
37904614 AATCGAGGGTAAAATAGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* * *
37904641 AATCGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
**
37904668 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAATGGTAATTCTGTA
37904695 AATCGAGGG
1 AATCGAGGG
37904704 CATTTCAGTA
Statistics
Matches: 150, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
26 1 0.01
27 148 0.99
28 1 0.01
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTGTA
Found at i:37904622 original size:81 final size:81
Alignment explanation
Indices: 37904506--37904703 Score: 310
Period size: 81 Copynumber: 2.4 Consensus size: 81
37904496 GTAATTTCAC
* * *
37904506 AATCGAGGGTAAAATGGTAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTGTAAATCGAGGGT
1 AATCGAGGGTAAAATGGTAATTCTATAAATC-GAGGGTAAAATAGTAATTTTGTAAATCGAGGGT
*
37904570 -AAAGCGGTAATTCTGTA
65 GAAA-CGGTAATTCTATA
*
37904587 AATCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGTG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGTG
37904652 AAACGGTAATTCTATA
66 AAACGGTAATTCTATA
*
37904668 AATCGAGGGTAAAATGGTAATTCTACAAATCGAGGG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGG
37904704 CATTTCAGTA
Statistics
Matches: 108, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
81 104 0.96
82 4 0.04
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.29
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGTG
AAACGGTAATTCTATA
Found at i:37913962 original size:40 final size:40
Alignment explanation
Indices: 37913925--37914109 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
37913915 GCTACTCGTT
*
37913925 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
37913965 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
37914005 AAAATGCCTTCGGG-CTTAGCCCAGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
37914044 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
37914085 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37914110 CATCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 10
0.81 0.13 0.07
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 76 0.63
41 13 0.11
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:37914093 original size:79 final size:80
Alignment explanation
Indices: 37913926--37914106 Score: 199
Period size: 79 Copynumber: 2.3 Consensus size: 80
37913916 CTACTCGTTC
* **
37913926 AAATGCCTTCGGGACATAGCCC-GGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 AAATGCCTTCGGGACTTAGCCCAGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* * *
37913990 ATTTAGTAACTCGGAA
65 ATATAGTAACTAGCAA
* **
37914006 AAATGCCTTCGGG-CTTAGCCCAGAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AAATGCCTTCGGGACTTAGCCCAGAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
37914069 ATATGGTCACTTAGCAC
65 ATATAGTAAC-TAGCAA
37914086 AAA-GCCTTCGGGACTTAGCCC
1 AAATGCCTTCGGGACTTAGCCC
37914107 GGACATCATT
Statistics
Matches: 85, Mismatches: 12, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.04
79 53 0.62
80 29 0.34
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
AAATGCCTTCGGGACTTAGCCCAGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTAGCAA
Found at i:37919702 original size:91 final size:91
Alignment explanation
Indices: 37919520--37919688 Score: 252
Period size: 91 Copynumber: 1.9 Consensus size: 91
37919510 GATACATGTC
*
37919520 TAAAGCAACGCTTGAATAAGAGTTGCCTTTGTGTAGTCCTAAGACGACACTTTTGTGGCGACATT
1 TAAAGCAACGCTTGAATAAGAGTTGCCTTTGTGTAGTCCTAAGACGACACTTTTGTGACGACATT
* *
37919585 TTCCTAAGGGTTGGTACATGTATGCT
66 TTCCTAAAGGTTGGTACATCTATGCT
* * *
37919611 TAAAGCAACGCTTGAATAAGAGTTG-GTTTTTGTCAGTCCTAAGACGACACTTTTGTGACTACA-
1 TAAAGCAACGCTTGAATAAGAGTTGCCTTTGTGT-AGTCCTAAGACGACACTTTTGTGACGACAT
*
37919674 TTTCCTAAATGTTGG
65 TTTCCTAAAGGTTGG
37919689 GATAGACTAT
Statistics
Matches: 71, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
90 19 0.27
91 52 0.73
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (91 bp):
TAAAGCAACGCTTGAATAAGAGTTGCCTTTGTGTAGTCCTAAGACGACACTTTTGTGACGACATT
TTCCTAAAGGTTGGTACATCTATGCT
Found at i:37919844 original size:132 final size:132
Alignment explanation
Indices: 37919589--37920088 Score: 745
Period size: 132 Copynumber: 3.8 Consensus size: 132
37919579 GACATTTTCC
* * * * * *
37919589 TAAGGGTTGGTACATGTATGCTTAAAGCAACGCTTGAATAAGAGTTGGTTTTTGTC-AGTCCTAA
1 TAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTCTGTCTAGTCCTAA
* * *
37919653 GACGACACTTTTGTGACTACA-TTTCCTAAATGTTGGGATAGACTATGCTTTGGCCAACTCTTTG
66 GACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAGACTATGCTTTGGCCAACTCTTTG
37919717 TA
131 TA
* * *
37919719 TAGGGGTTAGGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTCTGTGTAGTCCTAA
1 TAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTCTGTCTAGTCCTAA
* * *
37919784 GAAGACACTTTTGTGGTGACACTTCCCTAAGTGTTGGGATAGACTATGCTTTGGCCAACTCTTTG
66 GACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAGACTATGCTTTGGCCAACTCTTTG
37919849 TA
131 TA
*
37919851 TAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTTTGTCTAGTCCTAA
1 TAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTCTGTCTAGTCCTAA
* * *
37919916 GACGACACTTTTGTGGCGACACTTTTCTAAGTGTTGGAATAGACTACGCTTTGGCCAACTCTTTG
66 GACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAGACTATGCTTTGGCCAACTCTTTG
37919981 TA
131 TA
* * *
37919983 TAAGGGTTGGGATATGTATGCCTAAGACAATGCTTGAATAAGAGTTGGC-TCTTGTCTAGTCTTA
1 TAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTC-TGTCTAGTCCTA
* * *
37920047 AGACGACAGTTTTGGGGCGACACTTTTCTAAGTGTTGGGATA
65 AGACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATA
37920089 CACTTGTCAG
Statistics
Matches: 335, Mismatches: 32, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
130 47 0.14
131 26 0.08
132 262 0.78
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (132 bp):
TAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTCTGTCTAGTCCTAA
GACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAGACTATGCTTTGGCCAACTCTTTG
TA
Found at i:37920415 original size:15 final size:15
Alignment explanation
Indices: 37920397--37920426 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
37920387 AAAGTTTTAA
*
37920397 GGTTTTGTGTTTATG
1 GGTTTGGTGTTTATG
37920412 GGTTTGGTGTTTATG
1 GGTTTGGTGTTTATG
37920427 ATTTTAGGGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.00, G:0.37, T:0.57
Consensus pattern (15 bp):
GGTTTGGTGTTTATG
Found at i:37920424 original size:37 final size:37
Alignment explanation
Indices: 37920383--37920460 Score: 86
Period size: 37 Copynumber: 2.1 Consensus size: 37
37920373 AGTTTATATA
* * * *
37920383 GTTTAA-AGTTTTAAGGTTTTGTGTTTATGGGTTTGGT
1 GTTTAAGA-TTTTAAGGTTTTATGATTATGGATTTGGG
* *
37920420 GTTTATGATTTTAGGGTTTTATGATTATGGATTTGGG
1 GTTTAAGATTTTAAGGTTTTATGATTATGGATTTGGG
37920457 GTTT
1 GTTT
37920461 TGTGATTATG
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
37 33 0.97
38 1 0.03
ACGTcount: A:0.17, C:0.00, G:0.29, T:0.54
Consensus pattern (37 bp):
GTTTAAGATTTTAAGGTTTTATGATTATGGATTTGGG
Found at i:37920471 original size:22 final size:22
Alignment explanation
Indices: 37920411--37920476 Score: 71
Period size: 22 Copynumber: 3.0 Consensus size: 22
37920401 TTGTGTTTAT
* * *
37920411 GGGTTTGGTGTTTAT-GATTTTA
1 GGGTTTTGTGATTATGGA-TTTG
*
37920433 GGGTTTTATGATTATGGATTTG
1 GGGTTTTGTGATTATGGATTTG
*
37920455 GGGTTTTGTGATTATGGGTTTG
1 GGGTTTTGTGATTATGGATTTG
37920477 TGATTAATCT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
22 35 0.95
23 2 0.05
ACGTcount: A:0.14, C:0.00, G:0.35, T:0.52
Consensus pattern (22 bp):
GGGTTTTGTGATTATGGATTTG
Found at i:37920474 original size:37 final size:37
Alignment explanation
Indices: 37920397--37920475 Score: 88
Period size: 37 Copynumber: 2.1 Consensus size: 37
37920387 AAAGTTTTAA
* * * * *
37920397 GGTTTTGTGTTTATGGGTTTGGTGTTTATGATTTTAG
1 GGTTTTATGATTATGGATTTGGGGTTTATGATTATAG
*
37920434 GGTTTTATGATTATGGATTTGGGGTTTTGTGATTAT-G
1 GGTTTTATGATTATGGATTTGGGG-TTTATGATTATAG
37920471 GGTTT
1 GGTTT
37920476 GTGATTAATC
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
37 26 0.74
38 9 0.26
ACGTcount: A:0.13, C:0.00, G:0.33, T:0.54
Consensus pattern (37 bp):
GGTTTTATGATTATGGATTTGGGGTTTATGATTATAG
Found at i:37920602 original size:22 final size:22
Alignment explanation
Indices: 37920567--37920608 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
37920557 TTATGACTAC
*
37920567 GGTTTAGGGTTTTATGGTTTGT
1 GGTTTAGGGTTTTAAGGTTTGT
37920589 GGTTTAGGAG-TTTAAGGTTT
1 GGTTTAGG-GTTTTAAGGTTT
37920609 ATTATTTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 17 0.94
23 1 0.06
ACGTcount: A:0.14, C:0.00, G:0.36, T:0.50
Consensus pattern (22 bp):
GGTTTAGGGTTTTAAGGTTTGT
Found at i:37920607 original size:15 final size:15
Alignment explanation
Indices: 37920589--37920632 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
37920579 TATGGTTTGT
*
37920589 GGTTTAGGAGTTTAA
1 GGTTTAGGATTTTAA
**
37920604 GGTTTATTATTTTAA
1 GGTTTAGGATTTTAA
37920619 GGTTTAGGATTTTA
1 GGTTTAGGATTTTA
37920633 TGGTCTTGAG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (15 bp):
GGTTTAGGATTTTAA
Found at i:37921161 original size:47 final size:47
Alignment explanation
Indices: 37921092--37921264 Score: 292
Period size: 47 Copynumber: 3.7 Consensus size: 47
37921082 TTAAGAATGT
*
37921092 ATGCATACTTTACCCGGATAAAGTATGTATCAGCAGATTCACTAATA
1 ATGCATACTTTACCCGGATAAAGTATGTATTAGCAGATTCACTAATA
*
37921139 ATGCATACTTTACCTGGATAAAGTATGTATTAGCAGATTCACTAATA
1 ATGCATACTTTACCCGGATAAAGTATGTATTAGCAGATTCACTAATA
* *
37921186 ATGCATACTTTACCCGGATAAAGTATGTATTAGTAGATTCACTAGTA
1 ATGCATACTTTACCCGGATAAAGTATGTATTAGCAGATTCACTAATA
* *
37921233 ATGCATACTTTACCCGGGTAAAGTATGCATTA
1 ATGCATACTTTACCCGGATAAAGTATGTATTA
37921265 TTATTTGATT
Statistics
Matches: 119, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 119 1.00
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32
Consensus pattern (47 bp):
ATGCATACTTTACCCGGATAAAGTATGTATTAGCAGATTCACTAATA
Found at i:37923966 original size:7 final size:6
Alignment explanation
Indices: 37923924--37923962 Score: 51
Period size: 6 Copynumber: 6.2 Consensus size: 6
37923914 TTCAATCTTT
*
37923924 ATTTTA ATTTTA ATTTTA ATTTTGT ATTTTAA ATTTTA A
1 ATTTTA ATTTTA ATTTTA ATTTT-A ATTTT-A ATTTTA A
37923963 ATTTCTTTAG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
6 19 0.66
7 10 0.34
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (6 bp):
ATTTTA
Found at i:37924141 original size:36 final size:35
Alignment explanation
Indices: 37924112--37924503 Score: 304
Period size: 37 Copynumber: 10.7 Consensus size: 35
37924102 TTAAATAATA
* * *
37924112 TCTATCCCAACCTTTTTAAGGTTGCTTTAAACAGG
1 TCTATCCCAACCTTTTTAAGGTTGCCTTAGACATG
* *
37924147 TCTATCCCAACCTTTTTTAAAAGTTACCTTAGACATGG
1 TCTATCCCAACC-TTTTT-AAGGTTGCCTTAGACAT-G
*
37924185 TCTATCCCAACCTTTTTAAGGTTACCTTAGACGA-G
1 TCTATCCCAACCTTTTTAAGGTTGCCTTAGAC-ATG
* *
37924220 TCTATTCCGACCTTTTTTAAAGGTTGCCTTAGACATGG
1 TCTATCCCAACC-TTTTT-AAGGTTGCCTTAGACAT-G
* * *
37924258 TCTATCCTAACCTGTTTAAGGTTGCCTTAGACAGG
1 TCTATCCCAACCTTTTTAAGGTTGCCTTAGACATG
**
37924293 TCTATCCCAACCTTTTTTTATAGGTTGTTTTAGACAATG
1 TCTATCCCAACC--TTTTTA-AGGTTGCCTTAGAC-ATG
* * *
37924332 TCGATCCCAACCTTTTTAAGGTTGCATTAGAC-GG
1 TCTATCCCAACCTTTTTAAGGTTGCCTTAGACATG
* * * *
37924366 CTCTATTCCAACCGTTTTTAAAAGTTGCCTTAAACAAG
1 -TCTATCCCAACC-TTTTT-AAGGTTGCCTTAGACATG
* ** * * *
37924404 AACTATATCGACCTTTTTAAGGTTGTCTTAGACAGG
1 -TCTATCCCAACCTTTTTAAGGTTGCCTTAGACATG
* * * *
37924440 TTTATCACAACCTTTTTCAAAGGTTGGTCTTA-ACTAGG
1 TCTATCCCAACCTTTTT--AAGGTT-GCCTTAGAC-ATG
37924478 TCTATCCCAACCCTTTTTAAAGGTTG
1 TCTATCCCAA-CCTTTTT-AAGGTTG
37924504 GCATTGACTA
Statistics
Matches: 291, Mismatches: 45, Indels: 40
0.77 0.12 0.11
Matches are distributed among these distances:
34 1 0.00
35 57 0.20
36 72 0.25
37 73 0.25
38 68 0.23
39 20 0.07
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (35 bp):
TCTATCCCAACCTTTTTAAGGTTGCCTTAGACATG
Found at i:37924162 original size:73 final size:72
Alignment explanation
Indices: 37924073--37924503 Score: 382
Period size: 73 Copynumber: 5.9 Consensus size: 72
37924063 TATTATACGT
* * ** * *
37924073 GTCTATCCCAATCTTTTTTATAGGTTGTTTTAAATAATATCTATCCCAACCTTTTTAAGGTTGCT
1 GTCTATCCCAACCTTTTTTAAAGGTTGCCTTAAA-AATGTCTATCCCAACCTTTTTAAGGTTGCC
*
37924138 TTAAACAG
65 TTAGACAG
* * * * *
37924146 GTCTATCCCAACCTTTTTTAAAAGTTACCTTAGACATGGTCTATCCCAACCTTTTTAAGGTTACC
1 GTCTATCCCAACCTTTTTTAAAGGTTGCCTTAAAAAT-GTCTATCCCAACCTTTTTAAGGTTGCC
37924211 TTAGAC-G
65 TTAGACAG
* * * * * *
37924218 AGTCTATTCCGACCTTTTTTAAAGGTTGCCTTAGACATGGTCTATCCTAACCTGTTTAAGGTTGC
1 -GTCTATCCCAACCTTTTTTAAAGGTTGCCTTAAAAAT-GTCTATCCCAACCTTTTTAAGGTTGC
37924283 CTTAGACAG
64 CTTAGACAG
* ** * *
37924292 GTCTATCCCAACCTTTTTTTATAGGTTGTTTTAGACAATGTCGATCCCAACCTTTTTAAGGTTGC
1 GTCTATCCCAACC-TTTTTTAAAGGTTGCCTTA-AAAATGTCTATCCCAACCTTTTTAAGGTTGC
*
37924357 ATTAGAC-G
64 CTTAGACAG
* * * * ** *
37924365 GCTCTATTCCAACCGTTTTTAAAAGTTGCCTTAAACAA-GAACTATATCGACCTTTTTAAGGTTG
1 G-TCTATCCCAACCTTTTTTAAAGGTTGCCTTAAA-AATG-TCTATCCCAACCTTTTTAAGGTTG
*
37924429 TCTTAGACAG
63 CCTTAGACAG
* * * * ** *
37924439 GTTTATCACAACCTTTTTCAAAGGTTGGTCTTAACTAGGTCTATCCCAACCCTTTTTAAAGGTTG
1 GTCTATCCCAACCTTTTTTAAAGGTT-GCCTTAAAAATGTCTATCCCAA-CCTTTTT-AAGGTTG
37924504 GCATTGACTA
Statistics
Matches: 287, Mismatches: 58, Indels: 24
0.78 0.16 0.07
Matches are distributed among these distances:
72 5 0.02
73 200 0.70
74 73 0.25
75 9 0.03
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (72 bp):
GTCTATCCCAACCTTTTTTAAAGGTTGCCTTAAAAATGTCTATCCCAACCTTTTTAAGGTTGCCT
TAGACAG
Found at i:37924384 original size:147 final size:145
Alignment explanation
Indices: 37924102--37924508 Score: 451
Period size: 147 Copynumber: 2.8 Consensus size: 145
37924092 ATAGGTTGTT
* * * * *
37924102 TTAAATAATATCTATCCCAACCTTTTTAAGGTTGCTTTAAACAGGTCTATCCCAACCTTTTTTAA
1 TTAAACAAGATCTATCCTAACCTTTTTAAGGTTGCCTTAGACAGGTCTATCCCAACCTTTTTTAA
* ** * * *
37924167 AAGTTACCTTAGACATGGTCTATCCCAACCTTTTTAAGGTTACCTTAGACGAGTCTATTCCGACC
66 AGGTTGTCTTAGACAT-GTCTATCCCAACCTTTTTAAGGTTGCATTAGACGAGTCTATTCCAACC
* *
37924232 TTTTTTAAAGGTTGCC
130 GTTTTTAAAAGTTGCC
* * * *
37924248 TTAGACATGGTCTATCCTAACCTGTTTAAGGTTGCCTTAGACAGGTCTATCCCAACCTTTTTTTA
1 TTAAACAAGATCTATCCTAACCTTTTTAAGGTTGCCTTAGACAGGTCTATCCCAACC-TTTTTTA
* * *
37924313 TAGGTTGTTTTAGACAATGTCGATCCCAACCTTTTTAAGGTTGCATTAGACG-GCTCTATTCCAA
65 AAGGTTGTCTTAGAC-ATGTCTATCCCAACCTTTTTAAGGTTGCATTAGACGAG-TCTATTCCAA
37924377 CCGTTTTTAAAAGTTGCC
128 CCGTTTTTAAAAGTTGCC
* * * * * * *
37924395 TTAAACAAGAACTAT-ATCGACCTTTTTAAGGTTGTCTTAGACAGGTTTATCACAACCTTTTTCA
1 TTAAACAAGATCTATCCT-AACCTTTTTAAGGTTGCCTTAGACAGGTCTATCCCAACCTTTTTTA
*
37924459 AAGGTTGGTCTTA-ACTAGGTCTATCCCAACCCTTTTTAAAGGTTGGCATT
65 AAGGTT-GTCTTAGAC-ATGTCTATCCCAA-CCTTTTT-AAGGTT-GCATT
37924509 GACTAAGCCT
Statistics
Matches: 217, Mismatches: 36, Indels: 13
0.82 0.14 0.05
Matches are distributed among these distances:
146 74 0.34
147 130 0.60
148 8 0.04
149 5 0.02
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.37
Consensus pattern (145 bp):
TTAAACAAGATCTATCCTAACCTTTTTAAGGTTGCCTTAGACAGGTCTATCCCAACCTTTTTTAA
AGGTTGTCTTAGACATGTCTATCCCAACCTTTTTAAGGTTGCATTAGACGAGTCTATTCCAACCG
TTTTTAAAAGTTGCC
Found at i:37924482 original size:220 final size:221
Alignment explanation
Indices: 37924073--37924503 Score: 534
Period size: 220 Copynumber: 2.0 Consensus size: 221
37924063 TATTATACGT
* * * *
37924073 GTCTATCCCAATCTTTTTTATAGGTTGTTTTAAATAATATCTATCCCAACCTTTTTAAGGTTGCT
1 GTCTATCCCAACCTTTTTTATAGGTTGTTTTAAACAATATCGATCCCAACCTTTTTAAGGTTGCA
* * * ** *
37924138 TTAAACAGGTCTATCCCAACCTTTTTTAAAAGTTACCTTAGACATGGTCTATCCCAACCTTTTTA
66 TTAAACAGGTCTATCCCAACCGTTTTTAAAAGTTACCTTAAACAAGAACTATACCAACCTTTTTA
* * *
37924203 AGGTTACCTTAGACGAGTCTATTCCGACCTTTTTTAAAGGTTGCCTTAGACATGGTCTATCCTAA
131 AGGTTACCTTAGACGAGTCTATTCCAACCTTTTTCAAAGGTTGCCTTAGACATGGTCTATCCCAA
37924268 -CCTGTTT-AAGGTTGCCTTAGACAG
196 CCCTGTTTAAAGGTTGCCTTAGACAG
* *
37924292 GTCTATCCCAACCTTTTTTTATAGGTTGTTTTAGACAATGTCGATCCCAACCTTTTTAAGGTTGC
1 GTCTATCCCAACC-TTTTTTATAGGTTGTTTTAAACAATATCGATCCCAACCTTTTTAAGGTTGC
* * * * *
37924357 ATTAGAC-GGCTCTATTCCAACCGTTTTTAAAAGTTGCCTTAAACAAGAACTATATCGACCTTTT
65 ATTAAACAGG-TCTATCCCAACCGTTTTTAAAAGTTACCTTAAACAAGAACTATACCAACCTTTT
** * *
37924421 TAAGGTTGTCTTAGAC-AGGTTTA-TCACAACCTTTTTCAAAGGTTGGTCTTA-AC-TAGGTCTA
129 TAAGGTTACCTTAGACGA-GTCTATTC-CAACCTTTTTCAAAGGTT-GCCTTAGACAT-GGTCTA
*
37924482 TCCCAACCCTTTTTAAAGGTTG
190 TCCCAACCCTGTTTAAAGGTTG
37924504 GCATTGACTA
Statistics
Matches: 179, Mismatches: 25, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
219 18 0.10
220 143 0.80
221 11 0.06
222 7 0.04
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (221 bp):
GTCTATCCCAACCTTTTTTATAGGTTGTTTTAAACAATATCGATCCCAACCTTTTTAAGGTTGCA
TTAAACAGGTCTATCCCAACCGTTTTTAAAAGTTACCTTAAACAAGAACTATACCAACCTTTTTA
AGGTTACCTTAGACGAGTCTATTCCAACCTTTTTCAAAGGTTGCCTTAGACATGGTCTATCCCAA
CCCTGTTTAAAGGTTGCCTTAGACAG
Found at i:37924813 original size:16 final size:17
Alignment explanation
Indices: 37924782--37924814 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
37924772 AGAAGTGTAG
37924782 TTTTATATTGATTTTAC
1 TTTTATATTGATTTTAC
*
37924799 TTTTAT-TTTATTTTAC
1 TTTTATATTGATTTTAC
37924815 CACTATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.21, C:0.06, G:0.03, T:0.70
Consensus pattern (17 bp):
TTTTATATTGATTTTAC
Found at i:37935127 original size:56 final size:56
Alignment explanation
Indices: 37935041--37935160 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
37935031 ACAAGGGATG
37935041 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
37935097 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
37935153 ATGGGCAA
1 ATGGGCAA
37935161 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:37936695 original size:49 final size:47
Alignment explanation
Indices: 37936613--37937211 Score: 848
Period size: 47 Copynumber: 12.6 Consensus size: 47
37936603 TATTTGAATA
* *
37936613 AATGTGAAAGTGTATATATGTGATAAGGGCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
37936660 AATGTGAAAGTGTTTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
37936709 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
37936758 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
37936805 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
37936854 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
37936903 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
37936950 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
37936997 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
37937044 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
37937091 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGACCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
37937138 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
37937185 GATGTGGAAGTGTATAAATGTGGTAAG
1 AATGTGAAAGTGTATATATGTGATAAG
37937212 TCCCGAAGGG
Statistics
Matches: 519, Mismatches: 27, Indels: 12
0.93 0.05 0.02
Matches are distributed among these distances:
46 1 0.00
47 332 0.64
49 185 0.36
50 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:37960917 original size:18 final size:17
Alignment explanation
Indices: 37960881--37960937 Score: 51
Period size: 17 Copynumber: 3.3 Consensus size: 17
37960871 ATTATATGAT
* **
37960881 TTTTTATTTTTATTTTA
1 TTTTAATTTTTATAATA
37960898 TTTTCAATTTTTATAATA
1 TTTT-AATTTTTATAATA
* **
37960916 TTCTAAAATTTATAATA
1 TTTTAATTTTTATAATA
37960933 TTTTA
1 TTTTA
37960938 TAAAAGTTTT
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
17 19 0.59
18 13 0.41
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.65
Consensus pattern (17 bp):
TTTTAATTTTTATAATA
Found at i:37965411 original size:16 final size:17
Alignment explanation
Indices: 37965390--37965422 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
37965380 AAATATAGTG
37965390 GTAAAAT-AAAATAAAA
1 GTAAAATCAAAATAAAA
*
37965406 GTAAAATCAATATAAAA
1 GTAAAATCAAAATAAAA
37965423 CTACACTTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.70, C:0.03, G:0.06, T:0.21
Consensus pattern (17 bp):
GTAAAATCAAAATAAAA
Found at i:37965878 original size:36 final size:34
Alignment explanation
Indices: 37965698--37966088 Score: 298
Period size: 38 Copynumber: 10.7 Consensus size: 34
37965688 TAGTCAATGC
*
37965698 CAACCTTTAAAAAGGGTTGGGATAGACCTAGT-TAAGAC
1 CAACC-TTAAAAA-GGTTGGGATAGA-CT-GTCTAAG-G
* * *
37965736 CAACCTTTGAAAAAGGTTGTGATAAACCTGTCTAAGA
1 CAACC-TT-AAAAAGGTTGGGATAGA-CTGTCTAAGG
* ** * *
37965773 CAACCTTAAAAAGGTCGATATAGTTCTTGTTTAAGG
1 CAACCTTAAAAAGGTTGGGATAG-AC-TGTCTAAGG
* * * *
37965809 CAACTTTTAAAAACGGTTGGAATAGAGCCGTCTAATG
1 CAAC-CTTAAAAA-GGTTGGGATAGA-CTGTCTAAGG
* **
37965846 CAACCTTAAAAAGGTTGGGATCGACATTGTCTAAAA
1 CAACCTTAAAAAGGTTGGGATAGAC--TGTCTAAGG
37965882 CAACCTATAAAAAAGGTTGGGATAGACCTGTCTAAGG
1 CAACCT-T-AAAAAGGTTGGGATAGA-CTGTCTAAGG
* *
37965919 CAACCTTAAACAGGTTAGGATAGACCATGTCTAAGG
1 CAACCTTAAAAAGGTTGGGATAGA-C-TGTCTAAGG
* *
37965955 CAACCTTTAAAAAAGGTCGGAATAGACTCGTCTAAGG
1 CAACC-TT-AAAAAGGTTGGGATAGACT-GTCTAAGG
*
37965992 TAACCTTAAAAAGGTTGGGATAGACCATGTCTAAGG
1 CAACCTTAAAAAGGTTGGGATAGA-C-TGTCTAAGG
* * * *
37966028 TAACTTTTAAAAAAGGTTGGGATAGACCTGTTTAAAG
1 CAAC-CTT-AAAAAGGTTGGGATAGA-CTGTCTAAGG
37966065 CAACCTTAAAAAGGTTGGGATAGA
1 CAACCTTAAAAAGGTTGGGATAGA
37966089 TATTATTTAA
Statistics
Matches: 292, Mismatches: 41, Indels: 43
0.78 0.11 0.11
Matches are distributed among these distances:
34 1 0.00
35 72 0.25
36 65 0.22
37 66 0.23
38 82 0.28
39 6 0.02
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.26
Consensus pattern (34 bp):
CAACCTTAAAAAGGTTGGGATAGACTGTCTAAGG
Found at i:37966112 original size:73 final size:73
Alignment explanation
Indices: 37965698--37966127 Score: 397
Period size: 73 Copynumber: 5.9 Consensus size: 73
37965688 TAGTCAATGC
* * * * * *
37965698 CAACCTTTAAAAAGGGTTGGGATAGACCTAGT-TAAGACCAACCTTTGAAAAAGGTTGTGATAAA
1 CAACC-TTAAAAA-GGTTGGGATAGACATTGTCTAA-AGCAACCTTTAAAAAAGGTTGGGATAGA
37965762 CCTGTCT-AAG
63 CCTGTCTAAAG
* ** * * * * * *
37965772 ACAACCTTAAAAAGGTCGATATAGTTC-TTGTTTAAGGCAACTTTTAAAAACGGTTGGAATAGAG
1 -CAACCTTAAAAAGGTTGGGATAG-ACATTGTCTAAAGCAACCTTTAAAAAAGGTTGGGATAGA-
*
37965836 CC-GTCTAATG
63 CCTGTCTAAAG
* * *
37965846 CAACCTTAAAAAGGTTGGGATCGACATTGTCTAAAACAACCTATAAAAAAGGTTGGGATAGACCT
1 CAACCTTAAAAAGGTTGGGATAGACATTGTCTAAAGCAACCTTTAAAAAAGGTTGGGATAGACCT
*
37965911 GTCTAAGG
66 GTCTAAAG
* * * * *
37965919 CAACCTTAAACAGGTTAGGATAGACCA-TGTCTAAGGCAACCTTTAAAAAAGGTCGGAATAGA-C
1 CAACCTTAAAAAGGTTGGGATAGA-CATTGTCTAAAGCAACCTTTAAAAAAGGTTGGGATAGACC
*
37965982 TCGTCTAAGG
65 T-GTCTAAAG
* * * *
37965992 TAACCTTAAAAAGGTTGGGATAGACCA-TGTCTAAGGTAACTTTTAAAAAAGGTTGGGATAGACC
1 CAACCTTAAAAAGGTTGGGATAGA-CATTGTCTAAAGCAACCTTTAAAAAAGGTTGGGATAGACC
*
37966056 TGTTTAAAG
65 TGTCTAAAG
* * * * * *
37966065 CAACCTTAAAAAGGTTGGGATAGATATTATTTAAAACAACCTATAAAAAAGATTGGGATAGAC
1 CAACCTTAAAAAGGTTGGGATAGACATTGTCTAAAGCAACCTTTAAAAAAGGTTGGGATAGAC
37966128 ACGTATAATA
Statistics
Matches: 291, Mismatches: 54, Indels: 22
0.79 0.15 0.06
Matches are distributed among these distances:
72 6 0.02
73 261 0.90
74 19 0.07
75 5 0.02
ACGTcount: A:0.38, C:0.15, G:0.21, T:0.26
Consensus pattern (73 bp):
CAACCTTAAAAAGGTTGGGATAGACATTGTCTAAAGCAACCTTTAAAAAAGGTTGGGATAGACCT
GTCTAAAG
Found at i:37966126 original size:146 final size:145
Alignment explanation
Indices: 37965698--37966127 Score: 465
Period size: 146 Copynumber: 2.9 Consensus size: 145
37965688 TAGTCAATGC
* * *
37965698 CAACCTTTAAAAAGGGTTGGGATAGACC-TAGT-TAAGACCAACCTTTGAAAAAGGTTGTGATAA
1 CAACC-TTAAAAA-GGTTGGGATAGACCAT-GTCTAAGA-CAACCTTTAAAAAAGGTTGGGATAG
* ** * * * *
37965761 ACCTGTCT-AAGACAACCTTAAAAAGGTCGATATAGTTCTTGTTTAAGGCAACTTTTAAAAACGG
62 ACCTGTCTAAAG-CAACCTTAAAAAGGTTGGGATAGATATTGTTTAAGGCAACCTTTAAAAAAGG
*
37965825 TTGGAATAGAGCCGTCTAATG
126 TTGGAATAGA-CCGTCTAAGG
* * *
37965846 CAACCTTAAAAAGGTTGGGATCGA-CATTGTCTAAAACAACCTATAAAAAAGGTTGGGATAGACC
1 CAACCTTAAAAAGGTTGGGATAGACCA-TGTCTAAGACAACCTTTAAAAAAGGTTGGGATAGACC
* * * * * *
37965910 TGTCTAAGGCAACCTTAAACAGGTTAGGATAGACCA-TGTCTAAGGCAACCTTTAAAAAAGGTCG
65 TGTCTAAAGCAACCTTAAAAAGGTTGGGATAGA-TATTGTTTAAGGCAACCTTTAAAAAAGGTTG
37965974 GAATAGACTCGTCTAAGG
129 GAATAGAC-CGTCTAAGG
* ** *
37965992 TAACCTTAAAAAGGTTGGGATAGACCATGTCTAAGGTAACTTTTAAAAAAGGTTGGGATAGACCT
1 CAACCTTAAAAAGGTTGGGATAGACCATGTCTAAGACAACCTTTAAAAAAGGTTGGGATAGACCT
* * ** * * *
37966057 GTTTAAAGCAACCTTAAAAAGGTTGGGATAGATATTATTTAAAACAACCTATAAAAAAGATTGGG
66 GTCTAAAGCAACCTTAAAAAGGTTGGGATAGATATTGTTTAAGGCAACCTTTAAAAAAGGTTGGA
37966122 ATAGAC
131 ATAGAC
37966128 ACGTATAATA
Statistics
Matches: 234, Mismatches: 40, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
145 3 0.01
146 210 0.90
147 16 0.07
148 5 0.02
ACGTcount: A:0.38, C:0.15, G:0.21, T:0.26
Consensus pattern (145 bp):
CAACCTTAAAAAGGTTGGGATAGACCATGTCTAAGACAACCTTTAAAAAAGGTTGGGATAGACCT
GTCTAAAGCAACCTTAAAAAGGTTGGGATAGATATTGTTTAAGGCAACCTTTAAAAAAGGTTGGA
ATAGACCGTCTAAGG
Found at i:37966265 original size:6 final size:6
Alignment explanation
Indices: 37966238--37966276 Score: 51
Period size: 6 Copynumber: 6.2 Consensus size: 6
37966228 CTAAAGAAAT
*
37966238 TTAAAA TTTAAAA TACAAAA TTAAAA TTAAAA TTAAAA T
1 TTAAAA -TTAAAA T-TAAAA TTAAAA TTAAAA TTAAAA T
37966277 AAAGATTGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
6 18 0.62
7 11 0.38
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (6 bp):
TTAAAA
Found at i:37969067 original size:46 final size:47
Alignment explanation
Indices: 37968931--37969102 Score: 283
Period size: 47 Copynumber: 3.7 Consensus size: 47
37968921 ATCAAATAAA
* * * *
37968931 TAATGCATACTTTACCCGGGTAAAGTATGCATTACTAGTGAATCTAC
1 TAATACATACTTTATCCGGGTAAAGTATGCATTATTAGTGAATCTGC
37968978 TAATACATACTTTATCCGGGTAAAGTATGCATTATTAGTGAATCTGC
1 TAATACATACTTTATCCGGGTAAAGTATGCATTATTAGTGAATCTGC
*
37969025 TAATACATACTTTATCCAGGT-AAGTATGCATTATTAGTGAATCTGC
1 TAATACATACTTTATCCGGGTAAAGTATGCATTATTAGTGAATCTGC
*
37969071 TGATACATACTTTATCCGGGTAAAGTATGCAT
1 TAATACATACTTTATCCGGGTAAAGTATGCAT
37969103 ACATTCTTAA
Statistics
Matches: 117, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
46 44 0.38
47 73 0.62
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Consensus pattern (47 bp):
TAATACATACTTTATCCGGGTAAAGTATGCATTATTAGTGAATCTGC
Found at i:37969096 original size:93 final size:94
Alignment explanation
Indices: 37968931--37969102 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 94
37968921 ATCAAATAAA
* *
37968931 TAATGCATACTTTACCCGGGTAAAGTATGCATTACTAGTGAATCTACTAATACATACTTTATCCG
1 TAATACATACTTTACCCAGGTAAAGTATGCATTACTAGTGAATCTACTAATACATACTTTATCCG
37968996 GGTAAAGTATGCATTATTAGTGAATCTGC
66 GGTAAAGTATGCATTATTAGTGAATCTGC
* * * *
37969025 TAATACATACTTTATCCAGGT-AAGTATGCATTATTAGTGAATCTGCTGATACATACTTTATCCG
1 TAATACATACTTTACCCAGGTAAAGTATGCATTACTAGTGAATCTACTAATACATACTTTATCCG
37969089 GGTAAAGTATGCAT
66 GGTAAAGTATGCAT
37969103 ACATTCTTAA
Statistics
Matches: 72, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
93 54 0.75
94 18 0.25
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Consensus pattern (94 bp):
TAATACATACTTTACCCAGGTAAAGTATGCATTACTAGTGAATCTACTAATACATACTTTATCCG
GGTAAAGTATGCATTATTAGTGAATCTGC
Found at i:37969357 original size:30 final size:30
Alignment explanation
Indices: 37969323--37969379 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
37969313 TTTAAAATTA
37969323 TTTTAA-ATAATAGTATTTTTA-GTTTTTCAT
1 TTTTAACAT-ATA-TATTTTTACGTTTTTCAT
*
37969353 TTTTAACATATATTTTTTTACGTTTTT
1 TTTTAACATATATATTTTTACGTTTTT
37969380 ACTTTCAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
29 7 0.29
30 15 0.62
31 2 0.08
ACGTcount: A:0.26, C:0.05, G:0.05, T:0.63
Consensus pattern (30 bp):
TTTTAACATATATATTTTTACGTTTTTCAT
Found at i:37969572 original size:15 final size:15
Alignment explanation
Indices: 37969552--37969594 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
37969542 CTCAAGACCA
37969552 TAAAATCCTAAACCT
1 TAAAATCCTAAACCT
**
37969567 TAAAATAATAAA-CT
1 TAAAATCCTAAACCT
*
37969581 TAAACTCCTAAACC
1 TAAAATCCTAAACC
37969595 ACAAACCATA
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
14 11 0.50
15 11 0.50
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAAATCCTAAACCT
Found at i:37970265 original size:132 final size:130
Alignment explanation
Indices: 37970078--37970565 Score: 698
Period size: 132 Copynumber: 3.8 Consensus size: 130
37970068 CAAGTGTATC
* * * *
37970078 CCAACACTTAGAAAGTGTCGCCCCAAACTGTCGTCTTAAGACTAGACAAGAGCCAACTCTTATTC
1 CCAACACTTAGAAAGTGTCGCCACAAAGTGTCGTCTTAGGACTAGACAAAAGCCAACTCTTATTC
* * *
37970143 AAGCATTGTCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGCGTAGTCTATT
66 AAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGCATAGTCTATT
37970208 CCAACACTTAGAAAAGTGTCGCCACAAAAGTGTCGTCTTAGGACTAGACAAAAGCCAACTCTTAT
1 CCAACACTTAG-AAAGTGTCGCCAC-AAAGTGTCGTCTTAGGACTAGACAAAAGCCAACTCTTAT
37970273 TCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATAC-AAGAGTTGGCCAAAGCATAGTCTA
64 TCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGCATAGTCTA
*
37970337 TC
129 TT
* * * * *
37970339 CCAACACTTAGGGAAGTGTCACCACAAAGTGTCTTCTTAGGACTACACAGAAGCCAACTCTTATT
1 CCAACACTTA-GAAAGTGTCGCCACAAAGTGTCGTCTTAGGACTAGACAAAAGCCAACTCTTATT
* *
37970404 C-AGCGTTGCCTTAGGCATACATATCCTAACCCCTATACAAAGAGTTGGCCAAAGCATAGTCTA-
65 CAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGCATAGTCTAT
37970467 T
130 T
* * * * *
37970468 CCAACATTTAGGAA-TGTAGTCACAAAGTGTCGTCTTAGGACT-GACAAAAACCAACTCTTATTC
1 CCAACACTTAGAAAGTGTCGCCACAAAGTGTCGTCTTAGGACTAGACAAAAGCCAACTCTTATTC
* * * *
37970531 AAGCGTTGCTTTAAGCATACATGTACCAACCCTTA
66 AAGCGTTGCCTTAGGCATACATATCCCAACCCTTA
37970566 GGAAATGTCG
Statistics
Matches: 323, Mismatches: 30, Indels: 13
0.88 0.08 0.04
Matches are distributed among these distances:
126 18 0.06
127 52 0.16
128 4 0.01
129 44 0.14
130 73 0.23
131 57 0.18
132 75 0.23
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (130 bp):
CCAACACTTAGAAAGTGTCGCCACAAAGTGTCGTCTTAGGACTAGACAAAAGCCAACTCTTATTC
AAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGCATAGTCTATT
Found at i:37970455 original size:130 final size:129
Alignment explanation
Indices: 37970074--37970565 Score: 663
Period size: 130 Copynumber: 3.8 Consensus size: 129
37970064 CTGACAAGTG
* * * * *
37970074 TATCCCAACACTTAGAAAGTGTCGCCCCAAACTGTCGTCTTAAGACTAGACAAGAGCCAACTCTT
1 TATCCCAACACTTAGAAAGTGTCACCACAAAGTGTCGTCTTAGGACTACACAA-AGCCAACTCTT
* * *
37970139 ATTCAAGCATTGTCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGCGTAGTC
65 ATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGCATAGTC
* * *
37970204 TATTCCAACACTTAGAAAAGTGTCGCCACAAAAGTGTCGTCTTAGGACTAGACAAAAGCCAACTC
1 TATCCCAACACTTAG-AAAGTGTCACCAC-AAAGTGTCGTCTTAGGACTACAC-AAAGCCAACTC
37970269 TTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATAC-AAGAGTTGGCCAAAGCATAG
63 TTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGCATAG
37970333 TC
128 TC
* *
37970335 TATCCCAACACTTAGGGAAGTGTCACCACAAAGTGTCTTCTTAGGACTACACAGAAGCCAACTCT
1 TATCCCAACACTTA-GAAAGTGTCACCACAAAGTGTCGTCTTAGGACTACACA-AAGCCAACTCT
* *
37970400 TATTC-AGCGTTGCCTTAGGCATACATATCCTAACCCCTATACAAAGAGTTGGCCAAAGCATAGT
64 TATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGCATAGT
37970464 C
129 C
* * * *
37970465 TAT-CCAACATTTAGGAA-TGT-AGTCACAAAGTGTCGTCTTAGGACTGACA-AAAACCAACTCT
1 TATCCCAACACTTAGAAAGTGTCA-CCACAAAGTGTCGTCTTAGGACT-ACACAAAGCCAACTCT
* * * *
37970526 TATTCAAGCGTTGCTTTAAGCATACATGTACCAACCCTTA
64 TATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTA
37970566 GGAAATGTCG
Statistics
Matches: 329, Mismatches: 24, Indels: 21
0.88 0.06 0.06
Matches are distributed among these distances:
126 16 0.05
127 53 0.16
128 7 0.02
129 45 0.14
130 76 0.23
131 57 0.17
132 73 0.22
133 2 0.01
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (129 bp):
TATCCCAACACTTAGAAAGTGTCACCACAAAGTGTCGTCTTAGGACTACACAAAGCCAACTCTTA
TTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGCATAGTC
Found at i:37975929 original size:40 final size:40
Alignment explanation
Indices: 37975885--37976086 Score: 211
Period size: 40 Copynumber: 5.1 Consensus size: 40
37975875 ATGAATGATG
* * *
37975885 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATA
*
37975925 TCCGGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-A
1 TCCGGG-CTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
* * *
37975965 TCTGGGCTAAG--CCGAAGGCATTT-TCCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
*
37976002 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* * **
37976042 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATA
37976082 TCCGG
1 TCCGG
37976087 TTAAATTTCG
Statistics
Matches: 137, Mismatches: 17, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
36 10 0.07
37 22 0.16
39 19 0.14
40 60 0.44
41 18 0.13
42 8 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:37976100 original size:79 final size:76
Alignment explanation
Indices: 37975939--37976092 Score: 177
Period size: 76 Copynumber: 2.0 Consensus size: 76
37975929 GGACTAAGAT
* * **
37975939 CCGAAGGCATTTGTGCGAGATACTAATCTGGGCTAAGCCGAAGGCATTTTCCGAGTTACTAAATC
1 CCGAAGGCATTTGTGCGAGATACTAAACCGGGCTAAGCCGAAGGCATTTAACGAGTTACTAAATC
*
37976004 CGGGTTAAGTC
66 CGGGTTAAATC
* *
37976015 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCT
1 CCGAAGGCATTTGTGCGAGATACTA-AACCGGGCTAAG--CCGAAGGCATTT-AACGAGTTA-CT
*
37976079 ATATCC-GGTTAAAT
61 AAATCCGGGTTAAAT
37976093 TTCGAAGGTA
Statistics
Matches: 65, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
76 24 0.37
77 9 0.14
79 21 0.32
80 11 0.17
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.27
Consensus pattern (76 bp):
CCGAAGGCATTTGTGCGAGATACTAAACCGGGCTAAGCCGAAGGCATTTAACGAGTTACTAAATC
CGGGTTAAATC
Found at i:37995070 original size:40 final size:40
Alignment explanation
Indices: 37994959--37995174 Score: 289
Period size: 40 Copynumber: 5.5 Consensus size: 40
37994949 CGGATGATAA
* *
37994959 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
37994999 CCGGGCTAAG-CCC-AAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
37995037 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTAATATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
37995077 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
37995117 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
37995157 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
37995175 TACCGGGTTG
Statistics
Matches: 157, Mismatches: 15, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
38 30 0.19
39 24 0.15
40 103 0.66
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:37997187 original size:54 final size:55
Alignment explanation
Indices: 37997112--37997223 Score: 131
Period size: 54 Copynumber: 2.1 Consensus size: 55
37997102 GTAGGCCCAT
* * ** *
37997112 GCCCGTGTTAATTTAATAGGTTC-GCCCAC-GGTTGCTTGGCACGGGCGTGTCGCAC
1 GCCCGTGTTAACTTAACAGGTTCAG-CCACGGGTT-CAAGGCACGAGCGTGTCGCAC
*
37997167 GCCCGTGTTAACTT-ACAGGTTCAGCCACGGGTTCAAGGCACGAGTGTGTCGCAC
1 GCCCGTGTTAACTTAACAGGTTCAGCCACGGGTTCAAGGCACGAGCGTGTCGCAC
37997221 GCC
1 GCC
37997224 TGTGCTGTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 31 0.63
55 18 0.37
ACGTcount: A:0.17, C:0.29, G:0.30, T:0.24
Consensus pattern (55 bp):
GCCCGTGTTAACTTAACAGGTTCAGCCACGGGTTCAAGGCACGAGCGTGTCGCAC
Found at i:38001499 original size:21 final size:20
Alignment explanation
Indices: 38001475--38001513 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
38001465 CCGTGTTGAT
38001475 TTCGTACATTGGCCCATTTTC
1 TTCGT-CATTGGCCCATTTTC
**
38001496 TTCGTTTTTGGCCCATTT
1 TTCGTCATTGGCCCATTT
38001514 CTCGTTCCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.10, C:0.26, G:0.15, T:0.49
Consensus pattern (20 bp):
TTCGTCATTGGCCCATTTTC
Found at i:38004581 original size:79 final size:81
Alignment explanation
Indices: 38004445--38004627 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
38004435 TCGAATGATG
* *
38004445 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
38004509 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
38004524 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
38004586 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
38004604 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
38004628 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:38004643 original size:40 final size:40
Alignment explanation
Indices: 38004446--38004629 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
38004436 CGAATGATGT
* * * *
38004446 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
38004486 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
38004526 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
38004564 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
38004605 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
38004630 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:38004651 original size:79 final size:79
Alignment explanation
Indices: 38004498--38004652 Score: 199
Period size: 79 Copynumber: 2.0 Consensus size: 79
38004488 GGACTAAGAT
* **
38004498 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
38004563 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* * *
38004577 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
38004640 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
38004653 ATTCCAAAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
78 2 0.03
79 40 0.61
80 24 0.36
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:38007781 original size:61 final size:62
Alignment explanation
Indices: 38007716--38007833 Score: 175
Period size: 62 Copynumber: 1.9 Consensus size: 62
38007706 CACGGGCAAT
* *
38007716 GGACACGGGCATGTGTCCAAG-TGTGTAACTCATTGTTTATGGTATAAAACCACACAGCCAA
1 GGACACGGGCATGTGTCCAAGCTGTGTAACTCACTATTTATGGTATAAAACCACACAGCCAA
*** *
38007777 GGACACGGGCATGTGTTTTAGCTGTGTAACTCACTATTTGTGGTATAAAACCACACA
1 GGACACGGGCATGTGTCCAAGCTGTGTAACTCACTATTTATGGTATAAAACCACACA
38007834 ATGAGGGACA
Statistics
Matches: 50, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
61 18 0.36
62 32 0.64
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (62 bp):
GGACACGGGCATGTGTCCAAGCTGTGTAACTCACTATTTATGGTATAAAACCACACAGCCAA
Found at i:38010744 original size:20 final size:19
Alignment explanation
Indices: 38010719--38010779 Score: 59
Period size: 20 Copynumber: 3.1 Consensus size: 19
38010709 CCGTGTGCCT
38010719 CACACGACATTAGACAAGCC
1 CACACG-CATTAGACAAGCC
* *
38010739 CACACGGTATTAGACACGCC
1 CACAC-GCATTAGACAAGCC
* *
38010759 GACACTGCATTAGACATGCC
1 CACAC-GCATTAGACAAGCC
38010779 C
1 C
38010780 GTGTGTCTAA
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
20 32 0.97
21 1 0.03
ACGTcount: A:0.33, C:0.34, G:0.18, T:0.15
Consensus pattern (19 bp):
CACACGCATTAGACAAGCC
Found at i:38036294 original size:45 final size:45
Alignment explanation
Indices: 38036238--38036329 Score: 139
Period size: 45 Copynumber: 2.0 Consensus size: 45
38036228 TTTATTTGCC
* * *
38036238 TACACTCGAAAATTCATTTGAAATTTGAGAAGATTTAAATAAAAA
1 TACACTCGAAAATTCATTTAAAATTTGAAAAAATTTAAATAAAAA
* *
38036283 TACACTTGAAAATTCATTTAAAATTTTAAAAAATTTAAATAAAAA
1 TACACTCGAAAATTCATTTAAAATTTGAAAAAATTTAAATAAAAA
38036328 TA
1 TA
38036330 TTATGCTCAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.52, C:0.08, G:0.07, T:0.34
Consensus pattern (45 bp):
TACACTCGAAAATTCATTTAAAATTTGAAAAAATTTAAATAAAAA
Found at i:38044358 original size:47 final size:47
Alignment explanation
Indices: 38044304--38044497 Score: 271
Period size: 47 Copynumber: 4.1 Consensus size: 47
38044294 TTAGGATTTT
** * * *
38044304 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
38044351 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
38044398 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
38044445 ATATGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
38044492 ATGTGA
1 ATGTGA
38044498 AATATTTATG
Statistics
Matches: 130, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 130 1.00
ACGTcount: A:0.34, C:0.11, G:0.28, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:38044524 original size:48 final size:48
Alignment explanation
Indices: 38044467--38044648 Score: 294
Period size: 48 Copynumber: 3.8 Consensus size: 48
38044457 TGAACATGCA
38044467 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATTTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATTTATGAGATATG
*
38044515 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATTTATGAGATATG
* *
38044563 CATATGTGGTAAAGCCGAATGG-TCAATCTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTGAAATAT-T-TATGAGATATG
*
38044613 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
38044649 GTAGGCGATG
Statistics
Matches: 123, Mismatches: 7, Indels: 6
0.90 0.05 0.04
Matches are distributed among these distances:
47 1 0.01
48 79 0.64
50 42 0.34
51 1 0.01
ACGTcount: A:0.36, C:0.08, G:0.25, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATTTATGAGATATG
Found at i:38044622 original size:98 final size:96
Alignment explanation
Indices: 38044468--38044651 Score: 316
Period size: 98 Copynumber: 1.9 Consensus size: 96
38044458 GAACATGCAT
*
38044468 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATTTATGAGATATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATCTGAAATATTTATGAGATATGTATATGTGGTAAAGCCGA
38044533 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
38044564 ATATGTGGTAAAGCCGAATGG-TCAATCTGAAATATATATATGAGATATGTATATGTGGTAAAGC
1 ATATGTGGTAAAGCCGAATGGCT-AATCTGAAATAT-T-TATGAGATATGTATATGTGGTAAAGC
*
38044628 CGAATGGCTAGTGTGAAATATGTA
63 CGAATGGCTAATGTGAAATATGTA
38044652 GGCGATGTGC
Statistics
Matches: 83, Mismatches: 2, Indels: 4
0.93 0.02 0.04
Matches are distributed among these distances:
95 1 0.01
96 32 0.39
97 1 0.01
98 49 0.59
ACGTcount: A:0.36, C:0.08, G:0.26, T:0.31
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATCTGAAATATTTATGAGATATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:38044860 original size:37 final size:37
Alignment explanation
Indices: 38044797--38044868 Score: 117
Period size: 37 Copynumber: 1.9 Consensus size: 37
38044787 GGAAATATAT
* *
38044797 TCCGGGTAAGACTCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
*
38044834 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTT
38044869 CGTCTGAGCT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.22, C:0.18, G:0.31, T:0.29
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
Found at i:38048942 original size:48 final size:48
Alignment explanation
Indices: 38048880--38049103 Score: 188
Period size: 48 Copynumber: 4.7 Consensus size: 48
38048870 GACATTTGGG
* * * *
38048880 TGATATGTGTGCCAGTGTAAGACCATATCTGGGATATGGCACCGGCCA
1 TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCACCGGCCA
* * ** **
38048928 TGATATGAGAGCCAGTGTAAGACCATG-CTTGGAACATAGCTTCGGTAA
1 TGATATGAGAGCCAGTGTAAGACCATGTC-TGGGACATGGCACCGGCCA
* * * *
38048976 TG-TAATGAGAGCCAGTGTAAAACCATGTCTAGGACATGGCACAGACTACA
1 TGAT-ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCACCGGC--CA
* *
38049026 T--TATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGG-CA
1 TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCACCGGCCA
* * * *
38049071 TTGAGACGAGAACTAGTGTAAGACCATGTCTGG
1 -TGATATGAGAGCCAGTGTAAGACCATGTCTGG
38049104 TCGACATGTG
Statistics
Matches: 137, Mismatches: 31, Indels: 16
0.74 0.17 0.09
Matches are distributed among these distances:
45 2 0.01
46 1 0.01
47 2 0.01
48 128 0.93
49 2 0.01
50 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (48 bp):
TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCACCGGCCA
Found at i:38056409 original size:25 final size:27
Alignment explanation
Indices: 38056357--38056420 Score: 69
Period size: 25 Copynumber: 2.4 Consensus size: 27
38056347 TTATCGCTAT
* *
38056357 TATGTGTTGAATGATTGATTTTGCATAA
1 TATGTGTTGAATGA-TGATTATGAATAA
38056385 TATGT-TTGAATG-TGATTATGAATAA
1 TATGTGTTGAATGATGATTATGAATAA
* *
38056410 TGTGTGATGAA
1 TATGTGTTGAA
38056421 ATTAATGTGG
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
25 15 0.48
26 4 0.13
27 7 0.23
28 5 0.16
ACGTcount: A:0.31, C:0.02, G:0.23, T:0.44
Consensus pattern (27 bp):
TATGTGTTGAATGATGATTATGAATAA
Found at i:38056558 original size:48 final size:48
Alignment explanation
Indices: 38056499--38056695 Score: 213
Period size: 48 Copynumber: 4.1 Consensus size: 48
38056489 TATGTGTGCT
*
38056499 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGATATGAGAGCC
* * * * *
38056547 AGTGTAAGACCATGTTTGGAACATGGCATCAGCAATG-TAATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGAT-ATGAGAGCC
* * * *
38056595 AGTGTAAGACCATGTTTGGGACATGGCATCAG-CATTGATATGTGCA-CT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCA-CGATATGAG-AGCC
* * *
38056643 AGTGTAACACCATGTCTGGGACATGGCATCGGCCAC-ATTATAAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGA-TATGAGAGCC
38056691 AGTGT
1 AGTGT
38056696 CCCAGACAAG
Statistics
Matches: 126, Mismatches: 16, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
47 4 0.03
48 118 0.94
49 4 0.03
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGATATGAGAGCC
Found at i:38056667 original size:96 final size:96
Alignment explanation
Indices: 38056496--38056672 Score: 250
Period size: 96 Copynumber: 1.8 Consensus size: 96
38056486 TGATATGTGT
* *
38056496 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCCAGTGTAAGACCATG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGATATGAGAGCCAGTGTAACACCATG
*
38056561 TTTGGAACATGGCATCAGCAATGTAATGAGA
66 TCTGGAACATGGCATCAGCAATGTAATGAGA
* * * *
38056592 GCTAGTGTAAGACCATGTTTGGGACATGGCATCAG-CATTGATATGTGCA-CTAGTGTAACACCA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCA-CGATATGAG-AGCCAGTGTAACACCA
*
38056655 TGTCTGGGACATGGCATC
64 TGTCTGGAACATGGCATC
38056673 GGCCACATTA
Statistics
Matches: 71, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
95 2 0.03
96 68 0.96
97 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24
Consensus pattern (96 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGATATGAGAGCCAGTGTAACACCATG
TCTGGAACATGGCATCAGCAATGTAATGAGA
Found at i:38057236 original size:48 final size:48
Alignment explanation
Indices: 38057184--38057275 Score: 123
Period size: 48 Copynumber: 1.9 Consensus size: 48
38057174 CAAACATGGT
* * *
38057184 CTTACACTAGCTCACATGTTGAA-GCCGATGCCATGTCCCAGACAATGC
1 CTTACACTAACTCACATCTT-AATGCCGATACCATGTCCCAGACAATGC
**
38057232 CTTACACTAACTCTTATCTTAATGCCGATACCATGTCCCAGACA
1 CTTACACTAACTCACATCTTAATGCCGATACCATGTCCCAGACA
38057276 TACTAAGCTT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
47 2 0.05
48 36 0.95
ACGTcount: A:0.28, C:0.32, G:0.14, T:0.26
Consensus pattern (48 bp):
CTTACACTAACTCACATCTTAATGCCGATACCATGTCCCAGACAATGC
Found at i:38057417 original size:196 final size:195
Alignment explanation
Indices: 38057083--38057450 Score: 574
Period size: 196 Copynumber: 1.9 Consensus size: 195
38057073 ATCATTATCA
*
38057083 TAAGCTTTAAAATAACCCGTGTAACCATTTGGAATACTAAAGGATATCTGACAAGCTATACACAA
1 TAAGCTTTAAAATAACCCGTGAAACCATTTGGAATACTAAAGGATATCTGACAAGCTATACACAA
* * * *
38057148 AAGAGTGAATTGTCGATGCCATGTTTCAAACATGGTCTTACACTAGCTCACATGTTGAAGCCGAT
66 AAGAGTGAATTGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATGTCGAAGCCCAT
* *
38057213 GCCATGTCCCAGACAATGCCTTACACTAACTCTTATCTTAATGCCGATACCATGTCCCAGACATA
131 GCCATGTCCCAGAC-ATGCCTTACACTAACTCTCATCTCAATGCCGATACCATGTCCCAGACATA
38057278 C
195 C
* * * *
38057279 TAAGCTTTAAAATAACTCGTGAAACCATTTGGAATATTAAAGGATATCTGACAAGGTTTACACAA
1 TAAGCTTTAAAATAACCCGTGAAACCATTTGGAATACTAAAGGATATCTGACAAGCTATACACAA
* * * *
38057344 AAGGGTGAATTGCCGATGCCATGTTCCAAGCATGGTCTTACACTGGCTCACATGTCGAGGCCCAT
66 AAGAGTGAATTGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATGTCGAAGCCCAT
* *
38057409 GCCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATG
131 GCCATGTCCCAGACATGCCTTACACTAACTCTCATCTCAATG
38057451 TCTGGAACAT
Statistics
Matches: 155, Mismatches: 17, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
195 24 0.15
196 131 0.85
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (195 bp):
TAAGCTTTAAAATAACCCGTGAAACCATTTGGAATACTAAAGGATATCTGACAAGCTATACACAA
AAGAGTGAATTGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATGTCGAAGCCCAT
GCCATGTCCCAGACATGCCTTACACTAACTCTCATCTCAATGCCGATACCATGTCCCAGACATAC
Found at i:38059532 original size:39 final size:40
Alignment explanation
Indices: 38059443--38059546 Score: 174
Period size: 39 Copynumber: 2.6 Consensus size: 40
38059433 AGTCCAGTTA
*
38059443 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAAT
*
38059483 TAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGAAT
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAAT
*
38059522 TAGTATCTCGCACAAATGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGG
38059547 ATCTTAGTCC
Statistics
Matches: 61, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
39 35 0.57
40 26 0.43
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAAT
Found at i:38059532 original size:79 final size:80
Alignment explanation
Indices: 38059443--38059599 Score: 203
Period size: 79 Copynumber: 2.0 Consensus size: 80
38059433 AGTCCAGTTA
* *
38059443 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCACAAATGCCTTC
1 TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGATATAGTAACTTAGCACAAA-GCCTTC
38059506 GGG-CTTAGCCCGGAAT
64 GGGACTTAGCCCGGAAT
* ** * * *
38059522 TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGGACAAAGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGG
38059587 GACTTAGCCCGGA
66 GACTTAGCCCGGA
38059600 CATCATTCAA
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
78 3 0.04
79 46 0.69
80 18 0.27
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGG
GACTTAGCCCGGAAT
Found at i:38059599 original size:40 final size:40
Alignment explanation
Indices: 38059396--38059599 Score: 181
Period size: 40 Copynumber: 5.1 Consensus size: 40
38059386 CGGAATTTAA
** * *
38059396 CCGGATATAGCTACTT-GTTCAAATGCCTTCGGGACATAGT
1 CCGGATATAG-TACTTCGCACAAATGCCTTCGGGACTTAGC
* * *
38059436 CCAGTTATAGTAAC-TCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGT-ACTTCGCACAAATGCCTTCGGGACTTAGC
*
38059476 CCGGATTTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGT-ACTTCGCACAAATGCCTTCGGGACTTAGC
*
38059515 CCGGA-ATTAGTA-TCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTACT-TCGCACAAATGCCTTCGGGA-CTTAGC
* * *
38059555 CCGGATATGGTCACTTAGGACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGT-ACTTCGCACAAATGCCTTCGGGACTTAGC
38059595 CCGGA
1 CCGGA
38059600 CATCATTCAA
Statistics
Matches: 136, Mismatches: 17, Indels: 22
0.78 0.10 0.13
Matches are distributed among these distances:
38 3 0.02
39 32 0.24
40 88 0.65
41 12 0.09
42 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTACTTCGCACAAATGCCTTCGGGACTTAGC
Found at i:38067469 original size:40 final size:40
Alignment explanation
Indices: 38067432--38067563 Score: 169
Period size: 40 Copynumber: 3.3 Consensus size: 40
38067422 GCTACTCGTT
**
38067432 CAAATGCCTTCGGGACATAGTCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATT-TAGTAACTCGCA
*
38067472 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * * *
38067512 CAAATGCCTTCGGG-CTTAGCCCAGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
38067551 CAAATGCCTTCGG
1 CAAATGCCTTCGG
38067564 ATCTTAGTCC
Statistics
Matches: 84, Mismatches: 7, Indels: 3
0.89 0.07 0.03
Matches are distributed among these distances:
39 34 0.40
40 48 0.57
41 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:38067549 original size:79 final size:80
Alignment explanation
Indices: 38067460--38067613 Score: 206
Period size: 79 Copynumber: 1.9 Consensus size: 80
38067450 AGTCCGGTTA
* *
38067460 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCACAAATGCCTTC
1 TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGATATAGTAACTTAGCACAAA-GCCTTC
38067523 GGG-CTTAGCCCAGAAT
64 GGGACTTAGCCCAGAAT
* ** * *
38067539 TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGG
38067604 GACTTAGCCC
66 GACTTAGCCC
38067614 GGACATCATT
Statistics
Matches: 65, Mismatches: 7, Indels: 5
0.84 0.09 0.06
Matches are distributed among these distances:
78 3 0.05
79 46 0.71
80 16 0.25
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGG
GACTTAGCCCAGAAT
Found at i:38067553 original size:39 final size:40
Alignment explanation
Indices: 38067460--38067563 Score: 165
Period size: 39 Copynumber: 2.6 Consensus size: 40
38067450 AGTCCGGTTA
* *
38067460 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAGAAT
*
38067500 TAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCAGAAT
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAGAAT
*
38067539 TAGTATCTCGCACAAATGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGG
38067564 ATCTTAGTCC
Statistics
Matches: 60, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
39 34 0.57
40 26 0.43
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAGAAT
Found at i:38070726 original size:33 final size:33
Alignment explanation
Indices: 38070684--38070751 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
38070674 GGAACAGATG
38070684 TTAGATCAATTACAGGTAATGAATTCTATTATT
1 TTAGATCAATTACAGGTAATGAATTCTATTATT
*
38070717 TTAGATCAATTGCAGGTAATGAATTCTATTATT
1 TTAGATCAATTACAGGTAATGAATTCTATTATT
38070750 TT
1 TT
38070752 TTAGATGTCA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.34, C:0.09, G:0.13, T:0.44
Consensus pattern (33 bp):
TTAGATCAATTACAGGTAATGAATTCTATTATT
Found at i:38084859 original size:12 final size:14
Alignment explanation
Indices: 38084830--38084861 Score: 50
Period size: 12 Copynumber: 2.4 Consensus size: 14
38084820 CTTAAAATAG
38084830 AATAAAAGTAACAA
1 AATAAAAGTAACAA
38084844 AATAAAA-TAA-AA
1 AATAAAAGTAACAA
38084856 AATAAA
1 AATAAA
38084862 TGTTTTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 8 0.44
13 3 0.17
14 7 0.39
ACGTcount: A:0.78, C:0.03, G:0.03, T:0.16
Consensus pattern (14 bp):
AATAAAAGTAACAA
Found at i:38089379 original size:13 final size:13
Alignment explanation
Indices: 38089361--38089387 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
38089351 TATTTTAATC
38089361 AGTTAATTAGTTT
1 AGTTAATTAGTTT
38089374 AGTTAATTAGTTT
1 AGTTAATTAGTTT
38089387 A
1 A
38089388 ATAAACAACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (13 bp):
AGTTAATTAGTTT
Found at i:38089693 original size:9 final size:9
Alignment explanation
Indices: 38089679--38089710 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
38089669 ACAATTTAAT
38089679 TTAATTTTA
1 TTAATTTTA
38089688 TTAATTTTA
1 TTAATTTTA
38089697 TT-A-TTTA
1 TTAATTTTA
38089704 TTAATTT
1 TTAATTT
38089711 ACTTTTCCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
7 6 0.29
8 2 0.10
9 13 0.62
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (9 bp):
TTAATTTTA
Found at i:38094413 original size:6 final size:6
Alignment explanation
Indices: 38094402--38094434 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
38094392 TCCTCTTATC
*
38094402 TTTTTA TTTTTA TTTTTA TTTTTA TTTTCA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTT
38094435 CAATTTTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTTA
Found at i:38094440 original size:18 final size:18
Alignment explanation
Indices: 38094402--38094441 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
38094392 TCCTCTTATC
* **
38094402 TTTTTATTTTTATTTTTA
1 TTTTTATTTTCATTTCAA
38094420 TTTTTATTTTCATTTCAA
1 TTTTTATTTTCATTTCAA
38094438 TTTT
1 TTTT
38094442 ATTATTTTCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (18 bp):
TTTTTATTTTCATTTCAA
Found at i:38100266 original size:50 final size:50
Alignment explanation
Indices: 38100207--38100438 Score: 253
Period size: 50 Copynumber: 4.7 Consensus size: 50
38100197 GGGATAAATA
38100207 AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATATG
1 AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATATG
* *
38100257 AGAGCTAGTGTAAGGCCATGTCTGGGACATGGCATCGG-CT--TGATAT-
1 AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATATG
* * * * *
38100303 -GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACAC-CGATAGATG
1 AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGAGATATG
* * * * * * *
38100352 AGAGCCAATGTAAGACCATGTCAGGGATATGGCTTCGGCCTCGACATACG
1 AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATATG
* *
38100402 AG-GGTCAGTGTAAGACCATGCCTGGGACATGGCATCG
1 AGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCG
38100439 ACTTTGATGT
Statistics
Matches: 149, Mismatches: 25, Indels: 16
0.78 0.13 0.08
Matches are distributed among these distances:
45 33 0.22
47 6 0.04
48 3 0.02
49 4 0.03
50 103 0.69
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.22
Consensus pattern (50 bp):
AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATATG
Found at i:38100384 original size:95 final size:98
Alignment explanation
Indices: 38100213--38100440 Score: 275
Period size: 95 Copynumber: 2.3 Consensus size: 98
38100203 AATAAGAGCT
* * * * *
38100213 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATATGAGAGCTAGTGTAAGGCCATGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGAGAGATGAGAGCCAATGTAAGACCATGT
* * * *
38100278 CTGGGACATGGCATCGG-CTTG-ATA-TGTGCC
66 CAGGGACATGGCATCGGCCTCGAATACAGGGCC
*
38100308 AGTGTAAGACCATGTCTGGGACATGGCATCGACAC-CGATAGATGAGAGCCAATGTAAGACCATG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGAC-CTCGAGAGATGAGAGCCAATGTAAGACCATG
* * *
38100372 TCAGGGATATGGCTTCGGCCTCGACATACGAGGGTC
65 TCAGGGACATGGCATCGGCCTCGA-ATAC-AGGGCC
*
38100408 AGTGTAAGACCATGCCTGGGACATGGCATCGAC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGAC
38100441 TTTGATGTGT
Statistics
Matches: 113, Mismatches: 14, Indels: 7
0.84 0.10 0.05
Matches are distributed among these distances:
95 71 0.63
96 4 0.04
98 3 0.03
100 35 0.31
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.21
Consensus pattern (98 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGAGAGATGAGAGCCAATGTAAGACCATGT
CAGGGACATGGCATCGGCCTCGAATACAGGGCC
Found at i:38101814 original size:7 final size:7
Alignment explanation
Indices: 38101802--38101832 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
38101792 ATTAAATTAA
38101802 ATTGAAT
1 ATTGAAT
38101809 ATTGAAT
1 ATTGAAT
*
38101816 ATTTAAT
1 ATTGAAT
38101823 ATTGAAT
1 ATTGAAT
38101830 ATT
1 ATT
38101833 AAAATAAGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.42, C:0.00, G:0.10, T:0.48
Consensus pattern (7 bp):
ATTGAAT
Found at i:38105290 original size:10 final size:10
Alignment explanation
Indices: 38105275--38105316 Score: 52
Period size: 9 Copynumber: 4.3 Consensus size: 10
38105265 TATTTTAAAA
*
38105275 ATTAAAAATC
1 ATTAAAAATT
38105285 ATT-AAAATT
1 ATTAAAAATT
38105294 ATTTAAAAATT
1 A-TTAAAAATT
38105305 ATT-AAAATT
1 ATTAAAAATT
38105314 ATT
1 ATT
38105317 TTTTTAATAT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
9 15 0.52
10 7 0.24
11 7 0.24
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (10 bp):
ATTAAAAATT
Found at i:38105299 original size:20 final size:20
Alignment explanation
Indices: 38105276--38105317 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
38105266 ATTTTAAAAA
38105276 TTAAAAATCATTAAAATTAT
1 TTAAAAATCATTAAAATTAT
*
38105296 TTAAAAATTATTAAAATTAT
1 TTAAAAATCATTAAAATTAT
38105316 TT
1 TT
38105318 TTTTAATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (20 bp):
TTAAAAATCATTAAAATTAT
Found at i:38114592 original size:20 final size:20
Alignment explanation
Indices: 38114567--38114606 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
38114557 AATGACATAG
38114567 GAAAAATCCTATATATTTTT
1 GAAAAATCCTATATATTTTT
38114587 GAAAAATCCTATATATTTTT
1 GAAAAATCCTATATATTTTT
38114607 TCGTTTACAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.10, G:0.05, T:0.45
Consensus pattern (20 bp):
GAAAAATCCTATATATTTTT
Found at i:38115676 original size:31 final size:30
Alignment explanation
Indices: 38115641--38115834 Score: 181
Period size: 31 Copynumber: 6.3 Consensus size: 30
38115631 TGGGTTAGGT
*
38115641 CGTGTGGGCCCACATGAGTGAACCACACGGT
1 CGTGTGGGCCCACA-GAGTGAACCACACGGC
* *
38115672 CGTGTAGGCCCACACAGGTGAACCACACGGC
1 CGTGTGGGCCCACAGA-GTGAACCACACGGC
* * **
38115703 CGTGTAGGCCCACACGGGTGAACCACACTAC
1 CGTGTGGGCCCACA-GAGTGAACCACACGGC
* * * **
38115734 CATGTGGGCCCACATGGGTGAACCATACTAC
1 CGTGTGGGCCCACA-GAGTGAACCACACGGC
* *
38115765 CGTGTGGGCCCACACGGGTGAACCACACTGC
1 CGTGTGGGCCCACA-GAGTGAACCACACGGC
* * *
38115796 CGTGTGGGCCCACACAGGTTAACCACACGGG
1 CGTGTGGGCCCACAGA-GTGAACCACACGGC
38115827 CGTGTGGG
1 CGTGTGGG
38115835 ATTCTGGGCC
Statistics
Matches: 140, Mismatches: 20, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
30 1 0.01
31 139 0.99
ACGTcount: A:0.23, C:0.32, G:0.31, T:0.14
Consensus pattern (30 bp):
CGTGTGGGCCCACAGAGTGAACCACACGGC
Found at i:38115686 original size:18 final size:17
Alignment explanation
Indices: 38115663--38115719 Score: 50
Period size: 18 Copynumber: 3.5 Consensus size: 17
38115653 CATGAGTGAA
38115663 CCACACGGTCGTGTAGGC
1 CCACACGG-CGTGTAGGC
* *
38115681 CCACACAG-GTG-A--A
1 CCACACGGCGTGTAGGC
38115694 CCACACGGCCGTGTAGGC
1 CCACACGG-CGTGTAGGC
38115712 CCACACGG
1 CCACACGG
38115720 GTGAACCACA
Statistics
Matches: 30, Mismatches: 4, Indels: 10
0.68 0.09 0.23
Matches are distributed among these distances:
13 7 0.23
15 4 0.13
16 4 0.13
18 15 0.50
ACGTcount: A:0.23, C:0.37, G:0.30, T:0.11
Consensus pattern (17 bp):
CCACACGGCGTGTAGGC
Found at i:38115744 original size:62 final size:62
Alignment explanation
Indices: 38115641--38115834 Score: 253
Period size: 62 Copynumber: 3.1 Consensus size: 62
38115631 TGGGTTAGGT
* * * * *
38115641 CGTGTGGGCCCACATGAGTGAACCACACGGTCGTGTAGGCCCACACAGGTGAACCACACGGC
1 CGTGTGGGCCCACACGGGTGAACCACACTGCCGTGTGGGCCCACACAGGTGAACCACACGGC
* * * ** * **
38115703 CGTGTAGGCCCACACGGGTGAACCACACTACCATGTGGGCCCACATGGGTGAACCATACTAC
1 CGTGTGGGCCCACACGGGTGAACCACACTGCCGTGTGGGCCCACACAGGTGAACCACACGGC
* *
38115765 CGTGTGGGCCCACACGGGTGAACCACACTGCCGTGTGGGCCCACACAGGTTAACCACACGGG
1 CGTGTGGGCCCACACGGGTGAACCACACTGCCGTGTGGGCCCACACAGGTGAACCACACGGC
38115827 CGTGTGGG
1 CGTGTGGG
38115835 ATTCTGGGCC
Statistics
Matches: 109, Mismatches: 23, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
62 109 1.00
ACGTcount: A:0.23, C:0.32, G:0.31, T:0.14
Consensus pattern (62 bp):
CGTGTGGGCCCACACGGGTGAACCACACTGCCGTGTGGGCCCACACAGGTGAACCACACGGC
Found at i:38115806 original size:93 final size:93
Alignment explanation
Indices: 38115643--38115823 Score: 263
Period size: 93 Copynumber: 1.9 Consensus size: 93
38115633 GGTTAGGTCG
**
38115643 TGTGGGCCCACATGAGTGAACCACACGGTCGTGTAGGCCCACACAGGTGAACCACACGGCCGTGT
1 TGTGGGCCCACATGAGTGAACCACACGACCGTGTAGGCCCACACAGGTGAACCACACGGCCGTGT
*
38115708 AGGCCCACACGGGTGAACCACACTACCA
66 AGGCCCACACAGGTGAACCACACTACCA
* * * * * *
38115736 TGTGGGCCCACATGGGTGAACCATACTACCGTGTGGGCCCACACGGGTGAACCACACTGCCGTGT
1 TGTGGGCCCACATGAGTGAACCACACGACCGTGTAGGCCCACACAGGTGAACCACACGGCCGTGT
* *
38115801 GGGCCCACACAGGTTAACCACAC
66 AGGCCCACACAGGTGAACCACAC
38115824 GGGCGTGTGG
Statistics
Matches: 77, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 77 1.00
ACGTcount: A:0.24, C:0.33, G:0.28, T:0.14
Consensus pattern (93 bp):
TGTGGGCCCACATGAGTGAACCACACGACCGTGTAGGCCCACACAGGTGAACCACACGGCCGTGT
AGGCCCACACAGGTGAACCACACTACCA
Done.