Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 121 of 255
Found at i:38671331 original size:75 final size:75
Alignment explanation
Indices: 38671235--38671379 Score: 193
Period size: 75 Copynumber: 1.9 Consensus size: 75
38671225 TAGCCACTGT
* **
38671235 AAGACCATATTTAGGACATGGCATCGGTATTGATATGTG-TGCCAATGTAAGACCATATCTGGGA
1 AAGACCATATTTAGGACATGGCATCGGCACCGATATGTGATGCC-ATGTAAGACCATATCTGGGA
38671299 TATGGCATCCG
65 TATGGCATCCG
* * * * **
38671310 AAGACCATATTTGGGATATGGCATCGGCCCCGGTATGTGATTTCATGTAAGACCATATCTGGGAT
1 AAGACCATATTTAGGACATGGCATCGGCACCGATATGTGATGCCATGTAAGACCATATCTGGGAT
38671375 ATGGC
66 ATGGC
38671380 GTTGATATGA
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
75 58 0.97
76 2 0.03
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (75 bp):
AAGACCATATTTAGGACATGGCATCGGCACCGATATGTGATGCCATGTAAGACCATATCTGGGAT
ATGGCATCCG
Found at i:38671481 original size:90 final size:90
Alignment explanation
Indices: 38671387--38671553 Score: 221
Period size: 90 Copynumber: 1.9 Consensus size: 90
38671377 GGCGTTGATA
* * * * * * *
38671387 TGAGATTTTGTATAAGACCATGTCTGGGACATGGCATCGAT--GTGAGGTCCCATGTAAGACCGT
1 TGAGATTTCGTATAAGACCATATCTAGGACACGGCATCAATAGGT-A-GACCCATGTAAGACCAT
38671450 GTCTGGGACATGGCATCGGCACTGACT
64 GTCTGGGACATGGCATCGGCACTGACT
* *
38671477 TGAGATTTCGTATAAGACCATATCTAGGATACGGCATCAATAGGTAGACCCATGTAAGACTATGT
1 TGAGATTTCGTATAAGACCATATCTAGGACACGGCATCAATAGGTAGACCCATGTAAGACCATGT
38671542 CTGGGACATGGC
66 CTGGGACATGGC
38671554 TTTGGCATTC
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
90 63 0.95
91 1 0.02
92 2 0.03
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (90 bp):
TGAGATTTCGTATAAGACCATATCTAGGACACGGCATCAATAGGTAGACCCATGTAAGACCATGT
CTGGGACATGGCATCGGCACTGACT
Found at i:38676340 original size:50 final size:49
Alignment explanation
Indices: 38676214--38676405 Score: 186
Period size: 50 Copynumber: 3.9 Consensus size: 49
38676204 CTAGGTCGCA
* * * * * * *
38676214 TGTGTAGCACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAG-ATAGT-TGGTCACG
* * *
38676265 TGTATAGTACTAAGTGCAGGATACTATGTGTATCAGATAGTTAGGTCATG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATAGTT-GGTCACG
* * * * * * *
38676315 TGTGTAGTACTCAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATAGTTGGTCACG
* *
38676364 TGTGTAGTACTAAGTGCAGGCTAATATGCGTATCAGATAGTT
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATAGTT
38676406 TCACTACATA
Statistics
Matches: 113, Mismatches: 27, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
49 40 0.35
50 43 0.38
51 30 0.27
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATAGTTGGTCACG
Found at i:38680837 original size:101 final size:99
Alignment explanation
Indices: 38680716--38680900 Score: 271
Period size: 101 Copynumber: 1.8 Consensus size: 99
38680706 TATATGTAGC
* *
38680716 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGAAAACTGTGATCACGTGTGT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCGGAAAA-T-TGATCACATGTGT
*
38680781 AATACTAAGTGTAGGCTACTACGTGTATCAGATAGT
64 AATACTAAGTGCAGGCTACTACGTGTATCAGATAGT
* * * * * *
38680817 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCGCATGTGTAG
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCGGAAAATTGATCACATGTGTAA
38680882 TACTAAGTGCAGGCTACTA
66 TACTAAGTGCAGGCTACTA
38680901 TGGTACTAGA
Statistics
Matches: 75, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
99 29 0.39
100 1 0.01
101 45 0.60
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (99 bp):
TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCGGAAAATTGATCACATGTGTAA
TACTAAGTGCAGGCTACTACGTGTATCAGATAGT
Found at i:38680891 original size:49 final size:49
Alignment explanation
Indices: 38680718--38680912 Score: 230
Period size: 50 Copynumber: 3.9 Consensus size: 49
38680708 TATGTAGCTA
* * *
38680718 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGAAAACTGT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA-T-T
* * * * * * *
38680769 GATCACGTGTGTAATACTAAGTGTAGGCTACTACGTGTATCAGATAGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* *
38680818 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* *
38680868 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATG-GTACTAGATA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
38680913 GTTTGGCTAC
Statistics
Matches: 122, Mismatches: 21, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
48 8 0.07
49 34 0.28
50 43 0.35
51 37 0.30
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
Found at i:38681937 original size:16 final size:17
Alignment explanation
Indices: 38681916--38681947 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
38681906 ACTATGGTAT
38681916 ATGAAAT-ATTGATATA
1 ATGAAATAATTGATATA
38681932 ATGAAATAATTGATAT
1 ATGAAATAATTGATAT
38681948 GTGTTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.50, C:0.00, G:0.12, T:0.38
Consensus pattern (17 bp):
ATGAAATAATTGATATA
Found at i:38686265 original size:33 final size:33
Alignment explanation
Indices: 38686222--38686287 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
38686212 GTAAAGGAGT
38686222 ACGAACGAGGAAAGTCCCGTTGAACCTTAGGAA
1 ACGAACGAGGAAAGTCCCGTTGAACCTTAGGAA
*
38686255 ACGAATGAGGAAAGTCCCGTTGAACCTTAGGAA
1 ACGAACGAGGAAAGTCCCGTTGAACCTTAGGAA
38686288 TAGATTAGGA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.36, C:0.20, G:0.27, T:0.17
Consensus pattern (33 bp):
ACGAACGAGGAAAGTCCCGTTGAACCTTAGGAA
Found at i:38688703 original size:42 final size:42
Alignment explanation
Indices: 38688598--38688767 Score: 159
Period size: 43 Copynumber: 4.0 Consensus size: 42
38688588 TAGAAAGCTC
* * *
38688598 ATACAATGCCAACGTCCCAGAC-GTGGTCTTACATGTAGTCAA
1 ATACAATGCCAACGTCCCAAACAG-GGTCTTACATGAAATCAA
* *
38688640 ATATCAATGCC-ACTATCCCAAACAGGGTCTTACACGAAATCAA
1 ATA-CAATGCCAAC-GTCCCAAACAGGGTCTTACATGAAATCAA
* * *
38688683 ATACAATGCTAATGTCCCAAACATGGTCTTACATGTAAATCATA
1 ATACAATGCCAACGTCCCAAACAGGGTCTTACATG-AAATCA-A
* *
38688727 AGT-CAATGCCAACGTCCCAAA-TGTGGTCTTACATGATATCA
1 A-TACAATGCCAACGTCCCAAACAG-GGTCTTACATGAAATCA
38688768 CATATCGGAT
Statistics
Matches: 105, Mismatches: 15, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
42 30 0.29
43 44 0.42
44 30 0.29
45 1 0.01
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (42 bp):
ATACAATGCCAACGTCCCAAACAGGGTCTTACATGAAATCAA
Found at i:38689395 original size:21 final size:21
Alignment explanation
Indices: 38689354--38689392 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
38689344 ATAATGACCC
*
38689354 AACATCAAGCTTCCATAAACT
1 AACATCAAACTTCCATAAACT
38689375 AACATCAAACTT-CATAAA
1 AACATCAAACTTCCATAAA
38689393 ACTCATAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.49, C:0.26, G:0.03, T:0.23
Consensus pattern (21 bp):
AACATCAAACTTCCATAAACT
Found at i:38715173 original size:41 final size:42
Alignment explanation
Indices: 38715063--38715295 Score: 188
Period size: 43 Copynumber: 5.5 Consensus size: 42
38715053 GGATTTCTGC
* * * * * *
38715063 TATGTGTTCTCATGTAAGACCACGTTTGGGACGTTGGCATCGA
1 TATGTGAT-TCATGTAAGACCATGTCTAGGACATCGGCATCGA
* **
38715106 TATGTGATTACCTGTAAGACCATGTCTAGTTCATCGGCATC-A
1 TATGTGATT-CATGTAAGACCATGTCTAGGACATCGGCATCGA
* * *
38715148 TATTTGATTCATGTAAGACCCTGTCTAGGACAGT-GGCACCGA
1 TATGTGATTCATGTAAGACCATGTCTAGGACA-TCGGCATCGA
*
38715190 TATGTGATT-ATGTGTAAGACCATGTCTGGGACATCGGCATCG-
1 TATGTGATTCA--TGTAAGACCATGTCTAGGACATCGGCATCGA
* * * * * *
38715232 TATTTGATTCGTGTAAGACCCTGTTTGGGACAGT-GGCATTGA
1 TATGTGATTCATGTAAGACCATGTCTAGGACA-TCGGCATCGA
*
38715274 TATATGATTACATGTAAGACCA
1 TATGTGATT-CATGTAAGACCA
38715296 CGTTTGGGAT
Statistics
Matches: 153, Mismatches: 27, Indels: 20
0.76 0.14 0.10
Matches are distributed among these distances:
41 50 0.33
42 38 0.25
43 65 0.42
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.32
Consensus pattern (42 bp):
TATGTGATTCATGTAAGACCATGTCTAGGACATCGGCATCGA
Found at i:38715304 original size:84 final size:84
Alignment explanation
Indices: 38715072--38715304 Score: 299
Period size: 84 Copynumber: 2.8 Consensus size: 84
38715062 CTATGTGTTC
* *
38715072 TCATGTAAGACCAC-GTTTGGGAC-GTTGGCATCGATATGTGATTACCTGTAAGACCATGTCTAG
1 TCATGTAAGACC-CTGTTTGGGACAG-TGGCATCGATATGTGATTACATGTAAGACCATGTCTGG
**
38715135 TTCATCGGCATCATATTTGAT
64 GACATCGGCATCATATTTGAT
* * * **
38715156 TCATGTAAGACCCTGTCTAGGACAGTGGCACCGATATGTGATTATGTGTAAGACCATGTCTGGGA
1 TCATGTAAGACCCTGTTTGGGACAGTGGCATCGATATGTGATTACATGTAAGACCATGTCTGGGA
*
38715221 CATCGGCATCGTATTTGAT
66 CATCGGCATCATATTTGAT
* * * * *
38715240 TCGTGTAAGACCCTGTTTGGGACAGTGGCATTGATATATGATTACATGTAAGACCACGTTTGGGA
1 TCATGTAAGACCCTGTTTGGGACAGTGGCATCGATATGTGATTACATGTAAGACCATGTCTGGGA
38715305 TGTTGGCATT
Statistics
Matches: 128, Mismatches: 19, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
83 1 0.01
84 126 0.98
85 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.31
Consensus pattern (84 bp):
TCATGTAAGACCCTGTTTGGGACAGTGGCATCGATATGTGATTACATGTAAGACCATGTCTGGGA
CATCGGCATCATATTTGAT
Found at i:38720979 original size:27 final size:27
Alignment explanation
Indices: 38720949--38721053 Score: 156
Period size: 27 Copynumber: 3.9 Consensus size: 27
38720939 AAAATTATTG
*
38720949 AAATACCCCTGTAGGGTAGAGTTACTA
1 AAATACCCCTGTAGGGTAGAATTACTA
*
38720976 AAATACCCCTGTAGGGTAGAATTACCA
1 AAATACCCCTGTAGGGTAGAATTACTA
* * * *
38721003 AAATACCCTTATAGGGTAGAAATACTG
1 AAATACCCCTGTAGGGTAGAATTACTA
38721030 AAATACCCCTGTAGGGTAGAATTA
1 AAATACCCCTGTAGGGTAGAATTA
38721054 TCGAGATACC
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 68 1.00
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACTA
Found at i:38721062 original size:27 final size:26
Alignment explanation
Indices: 38720948--38721074 Score: 137
Period size: 27 Copynumber: 4.7 Consensus size: 26
38720938 CAAAATTATT
*
38720948 GAAATACCCCTGTAGGGTAGAGTTAC
1 GAAATACCCCTGTAGGGTAGAATTAC
*
38720974 TAAAATACCCCTGTAGGGTAGAATTACC
1 -GAAATACCCCTGTAGGGTAGAATTA-C
* * * *
38721002 AAAATACCCTTATAGGGTAGAAATAC
1 GAAATACCCCTGTAGGGTAGAATTAC
38721028 TGAAATACCCCTGTAGGGTAGAATTATC
1 -GAAATACCCCTGTAGGGTAGAATTA-C
* * *
38721056 GAGATACCCTTGTGGGGTA
1 GAAATACCCCTGTAGGGTA
38721075 AAAATTACCA
Statistics
Matches: 85, Mismatches: 12, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
26 1 0.01
27 82 0.96
28 2 0.02
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (26 bp):
GAAATACCCCTGTAGGGTAGAATTAC
Found at i:38721074 original size:54 final size:54
Alignment explanation
Indices: 38720941--38721079 Score: 179
Period size: 54 Copynumber: 2.6 Consensus size: 54
38720931 CGATTTACAA
* * **
38720941 AATTATTGAAATACCCCTGTAGGGTAGAGTTACTAAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAGAAATACTAAAATACCCCTGTAGGGTAG
* * * *
38720995 AATTACCAAAATACCCTTATAGGGTAGAAATACTGAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAGAAATACTAAAATACCCCTGTAGGGTAG
* * *
38721049 AATTATCGAGATACCCTTGTGGGGTAAAAAT
1 AATTATCGAAATACCCTTGTAGGGTAGAAAT
38721080 TACCATTTTG
Statistics
Matches: 71, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 71 1.00
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.27
Consensus pattern (54 bp):
AATTATCGAAATACCCTTGTAGGGTAGAAATACTAAAATACCCCTGTAGGGTAG
Found at i:38721336 original size:27 final size:26
Alignment explanation
Indices: 38721296--38721379 Score: 114
Period size: 27 Copynumber: 3.2 Consensus size: 26
38721286 AGGAAGCGTG
*
38721296 CTGGTGGCTATGCCACAAATATCTGTT
1 CTGGTGGCTCTGCCAC-AATATCTGTT
38721323 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGT-T
* * *
38721350 CTAGTGACTCTGTCACAATATCTGTT
1 CTGGTGGCTCTGCCACAATATCTGTT
38721376 CTGG
1 CTGG
38721380 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
26 13 0.25
27 38 0.75
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACAATATCTGTT
Found at i:38727926 original size:43 final size:43
Alignment explanation
Indices: 38727879--38728033 Score: 131
Period size: 43 Copynumber: 3.7 Consensus size: 43
38727869 TGTGTTCTCA
* *
38727879 TGTAAGACCACATTTGGGACGTTGGCATCGATATATGATTACG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATATGATTACG
* * * * * *
38727922 TGTAAGACCATGTCTGGGACATCGACATTG-TATTTGATT-CG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATATGATTACG
* * *
38727963 TGTAAGACC-C-TGCTTGGGAC-TGTGGCATCTATATGTGATTACA
1 TGTAAGACCACGT-C-TGGGACGT-TGGCATCGATATATGATTACG
* *
38728006 TGTATGACCACGTCTAGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
38728034 TGTACGATAT
Statistics
Matches: 87, Mismatches: 17, Indels: 16
0.73 0.14 0.13
Matches are distributed among these distances:
39 1 0.01
40 2 0.02
41 21 0.24
42 16 0.18
43 43 0.49
44 3 0.03
45 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.32
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATATGATTACG
Found at i:38731025 original size:46 final size:46
Alignment explanation
Indices: 38730958--38731132 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 46
38730948 TGTAACCCGC
* *
38730958 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGTAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCATTCATAT
* * *
38731004 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GG-ATGCCTAGGT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCATTCATA--T
* * * * * *
38731050 ACATCTCA-CGAACTCGGACTCAACTCAATGAGTTTGGACATTCACAT
1 CCA--TAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCATTCATAT
*
38731097 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
38731133 ATGCTCAACC
Statistics
Matches: 104, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
44 5 0.05
45 4 0.04
46 61 0.59
47 27 0.26
48 3 0.03
49 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCATTCATAT
Found at i:38731092 original size:93 final size:93
Alignment explanation
Indices: 38730965--38731136 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
38730955 CGCCCATAAG
* **
38730965 CGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGTATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
38731030 ACGAGTTCGGATGCCTAGGTACATCTCA
66 ACGAGTTCGGATGCCTAGGTACATCTCA
* * *
38731058 CGAACTCGGACTCAACTCAATGAGTTTGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
38731123 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
38731137 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGGTACATCTCA
Found at i:38734820 original size:47 final size:47
Alignment explanation
Indices: 38734768--38735502 Score: 1227
Period size: 47 Copynumber: 15.5 Consensus size: 47
38734758 TTATTCATTG
38734768 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
38734815 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
38734864 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
38734911 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
38734958 GAAAGTGTATATATATGTAATATGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
38735007 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
38735054 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
38735101 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
38735150 GAAAGTGTATATATTTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
38735197 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
38735244 GAAAGTGTATATATGTGATAAGGTCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
38735291 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
38735338 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
38735387 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* * * * * * *
38735434 GAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
38735481 GAAAGTGTATAAATGTGATAAG
1 GAAAGTGTATATATGTGATAAG
38735503 TCCCGAAGGG
Statistics
Matches: 652, Mismatches: 28, Indels: 16
0.94 0.04 0.02
Matches are distributed among these distances:
47 468 0.72
49 184 0.28
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.30
Consensus pattern (47 bp):
GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
Found at i:38735026 original size:143 final size:143
Alignment explanation
Indices: 38734768--38735502 Score: 1262
Period size: 143 Copynumber: 5.2 Consensus size: 143
38734758 TTATTCATTG
38734768 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGT
38734833 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
66 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
38734898 ATGTGATGAATGT
131 ATGTGATGAATGT
38734911 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGT
* *
38734976 AATATGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
66 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
38735041 ATGTGATGAATGT
131 ATGTGATGAATGT
* *
38735054 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATATATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGT
*
38735119 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATTTGATAAGGCCTAATAGCCG
66 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
38735184 ATGTGATGAATGT
131 ATGTGATGAATGT
38735197 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGT
* * *
38735260 GATAAGGTCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
66 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
38735325 ATGTGATGAATGT
131 ATGTGATGAATGT
38735338 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATAT
1 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
* * * * * *
38735401 GTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGC
64 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGC
* * *
38735466 CAACGTGATGGATGT
129 CGATGTGATGAATGT
*
38735481 GAAAGTGTATAAATGTGATAAG
1 GAAAGTGTATATATGTGATAAG
38735503 TCCCGAAGGG
Statistics
Matches: 566, Mismatches: 24, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
141 104 0.18
143 462 0.82
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.30
Consensus pattern (143 bp):
GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGT
GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
ATGTGATGAATGT
Found at i:38735096 original size:190 final size:190
Alignment explanation
Indices: 38734768--38735502 Score: 1262
Period size: 190 Copynumber: 3.9 Consensus size: 190
38734758 TTATTCATTG
38734768 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
1 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATAT
38734831 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGC
64 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGC
*
38734896 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
129 CGACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
38734958 GAAAGTGTATATATATGTAATATGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
1 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
*
38735023 GATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
66 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
38735088 ACGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
131 ACGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
38735150 GAAAGTGTATATAT-T-TGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGT
1 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
*
38735213 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGTCTAATAGCCG
66 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
*
38735278 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
131 ACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
38735338 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
1 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
* * * * * * *
38735403 GATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
66 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
* *
38735468 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
131 ACGTGATGAATGTGAAAGTGTATATATGTGATAAG
38735503 TCCCGAAGGG
Statistics
Matches: 517, Mismatches: 22, Indels: 12
0.94 0.04 0.02
Matches are distributed among these distances:
188 54 0.10
189 1 0.00
190 362 0.70
191 1 0.00
192 99 0.19
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.30
Consensus pattern (190 bp):
GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
ACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
Found at i:38735671 original size:37 final size:37
Alignment explanation
Indices: 38735621--38735721 Score: 166
Period size: 37 Copynumber: 2.7 Consensus size: 37
38735611 CCGAGCTCTA
38735621 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
* *
38735658 AAGACCCGATGACTATGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
* *
38735695 AAGACCCGATAACTTCGTGTGGAGATT
1 AAGACCCGATGACTACGTGTGGAGATT
38735722 TCGTCTGAGC
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.27
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
Found at i:38738566 original size:93 final size:93
Alignment explanation
Indices: 38738437--38738608 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
38738427 CGCCCATAAG
* * *
38738437 CGAACTCGGACTCAACTCAATGAGCTCAGGCGTTCGCATCCATAAGTGAACTTGGACTCAACTCA
1 CGAACTCGGACTCAACTCAAAGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
38738502 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
38738530 CGAACTCGGACTCAACTCAAAGAGTTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAAAGAGCTCAGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTC
38738594 AACGAGTTCGGATGC
65 AACGAGTTCGGATGC
38738609 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAAAGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:38738603 original size:46 final size:46
Alignment explanation
Indices: 38738430--38738605 Score: 182
Period size: 46 Copynumber: 3.8 Consensus size: 46
38738420 TGTAACCCGC
* * *
38738430 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* * *
38738476 CCATAAGTGAACTTGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
38738526 -C-TCA-CGAACTCGGACTCAACTCAAAGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
38738569 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
38738606 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 14, Indels: 20
0.76 0.10 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 58 0.55
47 27 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:38738624 original size:46 final size:44
Alignment explanation
Indices: 38738481--38738624 Score: 123
Period size: 46 Copynumber: 3.1 Consensus size: 44
38738471 CGCATCCATA
*
38738481 AGTGAACTTGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * * *
38738528 CA-CGAACTCGGACTCAACTCAAAGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCT
38738574 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
38738620 AGTGA
1 AGTGA
38738625 CATGTCACTT
Statistics
Matches: 77, Mismatches: 12, Indels: 16
0.73 0.11 0.15
Matches are distributed among these distances:
44 9 0.12
45 1 0.01
46 32 0.42
47 29 0.38
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:38740330 original size:54 final size:54
Alignment explanation
Indices: 38740238--38740349 Score: 147
Period size: 54 Copynumber: 2.1 Consensus size: 54
38740228 AGCATAGCTG
* *
38740238 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAACCA
* * *
38740292 CCAGAACAGAAATATGTGGCAGAG-CGACCAGAT-CAGATAATTGTGGCATAACCA
1 CCAGAACAGAAA-ATGTGACAGAGTC-ACCAGATACAGATAATCGTGGCAGAACCA
38740346 CCAG
1 CCAG
38740350 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.38, C:0.22, G:0.24, T:0.15
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAACCA
Found at i:38740348 original size:27 final size:27
Alignment explanation
Indices: 38740238--38740349 Score: 120
Period size: 27 Copynumber: 4.1 Consensus size: 27
38740228 AGCATAGCTG
* * *
38740238 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGATCAGATAATTGTGGCAGAGCCA
*
38740264 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAT-CAGATAATTGTGGCAGAGCCA
* *
38740292 CCAGAACAGA-AATATGTGGCAGAGCGA
1 CCAGATCAGATAAT-TGTGGCAGAGCCA
* *
38740319 CCAGATCAGATAATTGTGGCATAACCA
1 CCAGATCAGATAATTGTGGCAGAGCCA
38740346 CCAG
1 CCAG
38740350 GACGCTTCCT
Statistics
Matches: 71, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
26 8 0.11
27 45 0.63
28 18 0.25
ACGTcount: A:0.38, C:0.22, G:0.24, T:0.15
Consensus pattern (27 bp):
CCAGATCAGATAATTGTGGCAGAGCCA
Found at i:38744613 original size:39 final size:40
Alignment explanation
Indices: 38744505--38744689 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
38744495 TCGAATGATG
* * *
38744505 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
38744544 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
38744585 TCCGGGCTAAG-CCCGAAGGTATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
38744624 TCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
38744663 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
38744690 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 35 0.28
40 78 0.63
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:38744711 original size:79 final size:79
Alignment explanation
Indices: 38744558--38744712 Score: 190
Period size: 79 Copynumber: 2.0 Consensus size: 79
38744548 GGACTAAGAT
* * **
38744558 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGTATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
38744623 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* * *
38744637 CCGAAGGCATTTGTGTGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
38744700 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
38744713 ATTCTGAAGG
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
78 2 0.03
79 40 0.62
80 23 0.35
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:38762028 original size:27 final size:27
Alignment explanation
Indices: 38761998--38762175 Score: 162
Period size: 27 Copynumber: 6.6 Consensus size: 27
38761988 ATATTGAGTC
** *
38761998 CGCACACACAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
38762025 CGCACACTTAGTGCTACGA-AATCAAAT
1 CGCACACTTAGTGCTAC-ATAATCAACT
* *
38762052 CGCACACTTACTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
38762080 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
38762107 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
38762134 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
38762161 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
38762176 GTACAATTTA
Statistics
Matches: 126, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
26 1 0.01
27 101 0.80
28 24 0.19
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:38762087 original size:55 final size:55
Alignment explanation
Indices: 38761998--38762175 Score: 188
Period size: 54 Copynumber: 3.3 Consensus size: 55
38761988 ATATTGAGTC
** * *
38761998 CGCACACACAGTGCTAT-ATAATCAACTCGCACACTTAGTGCTACGA-AATCAAAT
1 CGCACACTTAGTGCTATCATAGTCAACTCGCACACTTAGTGC-ACGATAGTCAAAT
* * *
38762052 CGCACACTTACTGCTA-CATAGTCAAACTCGCACACTTAGTGC-CGCATGGTCAATT
1 CGCACACTTAGTGCTATCATAGTC-AACTCGCACACTTAGTGCACG-ATAGTCAAAT
* **
38762107 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAAC-ATAGTCAAAT
1 CGCACACTTAGTGCTATCATAGTCAACTCGCACACTTAGTGC-ACGATAGTCAAAT
38762161 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
38762176 GTACAATTTA
Statistics
Matches: 103, Mismatches: 13, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
53 2 0.02
54 58 0.56
55 42 0.41
56 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATAGTCAACTCGCACACTTAGTGCACGATAGTCAAAT
Found at i:38764150 original size:27 final size:27
Alignment explanation
Indices: 38764102--38764156 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
38764092 CAGTAACAGT
* * *
38764102 TGGGCCTAGCCCATTAATAGAATTAGG
1 TGGGCCTAGCCCAGTAACAGAATCAGG
38764129 TGGGCCTGAGCCCAGT-ACAGAATCAGG
1 TGGGCCT-AGCCCAGTAACAGAATCAGG
38764156 T
1 T
38764157 ATCAGATACA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 17 0.71
28 7 0.29
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (27 bp):
TGGGCCTAGCCCAGTAACAGAATCAGG
Found at i:38764320 original size:22 final size:22
Alignment explanation
Indices: 38764295--38764337 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
38764285 CACTAAGTCA
*
38764295 GCAGGACGGCTCAACGCCGTAG
1 GCAGGACGGCTAAACGCCGTAG
* *
38764317 GCAGGATGGCTAAAGGCCGTA
1 GCAGGACGGCTAAACGCCGTA
38764338 AATATCGCAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.26, C:0.26, G:0.37, T:0.12
Consensus pattern (22 bp):
GCAGGACGGCTAAACGCCGTAG
Found at i:38767280 original size:12 final size:12
Alignment explanation
Indices: 38767263--38767302 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
38767253 GTGATCAGTT
38767263 GAGAGATTTGAG
1 GAGAGATTTGAG
* *
38767275 GAGAGATGTGGG
1 GAGAGATTTGAG
*
38767287 GAGAGATTTTAG
1 GAGAGATTTGAG
38767299 GAGA
1 GAGA
38767303 AAATCATGGG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.33, C:0.00, G:0.45, T:0.23
Consensus pattern (12 bp):
GAGAGATTTGAG
Found at i:38768806 original size:27 final size:27
Alignment explanation
Indices: 38768766--38768951 Score: 212
Period size: 27 Copynumber: 6.9 Consensus size: 27
38768756 CCTAATTGGT
* * *
38768766 AAAAAGACTATTTTACCCTTATATGGC
1 AAAATGACTGTTTTGCCCTTATATGGC
*
38768793 AAAATGACTGTTTTGCCCTTATGTGGC
1 AAAATGACTGTTTTGCCCTTATATGGC
*
38768820 AAAATGACTGTTTTGCCCTTATGTGGC
1 AAAATGACTGTTTTGCCCTTATATGGC
*
38768847 AAAATGACTGTTTTACCCTTATATGGC
1 AAAATGACTGTTTTGCCCTTATATGGC
* * * * *
38768874 AAAATGACTATTTTTCCATTTTATGGT
1 AAAATGACTGTTTTGCCCTTATATGGC
* **
38768901 AAAATGAC-GATTTTGCCCTTATGTGAT
1 AAAATGACTG-TTTTGCCCTTATATGGC
* *
38768928 AAAATAACTATTTTGCCCTTATAT
1 AAAATGACTGTTTTGCCCTTATAT
38768952 CGTAAGCTAA
Statistics
Matches: 137, Mismatches: 20, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
27 137 1.00
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.39
Consensus pattern (27 bp):
AAAATGACTGTTTTGCCCTTATATGGC
Found at i:38768866 original size:54 final size:54
Alignment explanation
Indices: 38768766--38768951 Score: 239
Period size: 54 Copynumber: 3.4 Consensus size: 54
38768756 CCTAATTGGT
* *
38768766 AAAAAGACTATTTTACCCTTATATGGCAAAATGACTGTTTTGCCCTTATGTGGC
1 AAAATGACTATTTTGCCCTTATATGGCAAAATGACTGTTTTGCCCTTATGTGGC
* * * *
38768820 AAAATGACTGTTTTGCCCTTATGTGGCAAAATGACTGTTTTACCCTTATATGGC
1 AAAATGACTATTTTGCCCTTATATGGCAAAATGACTGTTTTGCCCTTATGTGGC
* * * * **
38768874 AAAATGACTATTTTTCCATTTTATGGTAAAATGAC-GATTTTGCCCTTATGTGAT
1 AAAATGACTATTTTGCCCTTATATGGCAAAATGACTG-TTTTGCCCTTATGTGGC
*
38768928 AAAATAACTATTTTGCCCTTATAT
1 AAAATGACTATTTTGCCCTTATAT
38768952 CGTAAGCTAA
Statistics
Matches: 111, Mismatches: 20, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
53 1 0.01
54 110 0.99
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.39
Consensus pattern (54 bp):
AAAATGACTATTTTGCCCTTATATGGCAAAATGACTGTTTTGCCCTTATGTGGC
Found at i:38768915 original size:81 final size:81
Alignment explanation
Indices: 38768766--38768951 Score: 248
Period size: 81 Copynumber: 2.3 Consensus size: 81
38768756 CCTAATTGGT
* * * *
38768766 AAAAAGACTATTTTACCCTTATATGGCAAAATGACTGTTTTGCCCTTATGTGGCAAAATGACTGT
1 AAAATGACTATTTTACCCTTATATGGCAAAATGACTATTTTGCCATTATATGGCAAAATGACTGT
*
38768831 TTTGCCCTTATGTGGC
66 TTTGCCCTTATGTGAC
* * * *
38768847 AAAATGACTGTTTTACCCTTATATGGCAAAATGACTATTTTTCCATTTTATGGTAAAATGAC-GA
1 AAAATGACTATTTTACCCTTATATGGCAAAATGACTATTTTGCCATTATATGGCAAAATGACTG-
*
38768911 TTTTGCCCTTATGTGAT
65 TTTTGCCCTTATGTGAC
* *
38768928 AAAATAACTATTTTGCCCTTATAT
1 AAAATGACTATTTTACCCTTATAT
38768952 CGTAAGCTAA
Statistics
Matches: 91, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
80 1 0.01
81 90 0.99
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.39
Consensus pattern (81 bp):
AAAATGACTATTTTACCCTTATATGGCAAAATGACTATTTTGCCATTATATGGCAAAATGACTGT
TTTGCCCTTATGTGAC
Found at i:38771923 original size:17 final size:18
Alignment explanation
Indices: 38771901--38771934 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
38771891 TACATTGAAG
38771901 TGTTTT-AGTGAAAACCT
1 TGTTTTCAGTGAAAACCT
*
38771918 TGTTTTCATTGAAAACC
1 TGTTTTCAGTGAAAACC
38771935 CTTCTTAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (18 bp):
TGTTTTCAGTGAAAACCT
Found at i:38772875 original size:37 final size:37
Alignment explanation
Indices: 38772822--38772957 Score: 245
Period size: 37 Copynumber: 3.7 Consensus size: 37
38772812 CGAATAGTCC
* * *
38772822 CCACACGTAGTTATCGGATCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
38772859 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
38772896 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
38772933 CCACACGTAGTCATCGGGTCTTACC
1 CCACACGTAGTCATCGGGTCTTACC
38772958 TGGAATATAT
Statistics
Matches: 96, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 96 1.00
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
Found at i:38776864 original size:29 final size:28
Alignment explanation
Indices: 38776799--38776882 Score: 96
Period size: 28 Copynumber: 3.0 Consensus size: 28
38776789 CCTATATCTA
* * * *
38776799 GCCCATTAAGCCCATTTATATTCATATG
1 GCCCATTAGGCCCAATCACATTCATATG
*
38776827 GCCCATTAGGCCCAAATCACATTTATATG
1 GCCCATTAGGCCC-AATCACATTCATATG
* *
38776856 GCCCGTTAGGCCCAGTCACATTCATAT
1 GCCCATTAGGCCCAATCACATTCATAT
38776883 TCATGCTCAC
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
28 24 0.51
29 23 0.49
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.30
Consensus pattern (28 bp):
GCCCATTAGGCCCAATCACATTCATATG
Found at i:38779762 original size:27 final size:28
Alignment explanation
Indices: 38779727--38779788 Score: 90
Period size: 27 Copynumber: 2.2 Consensus size: 28
38779717 TACGCATCGC
38779727 ATAGAGGCAAAATAGTCATCTTACCATAT
1 ATAG-GGCAAAATAGTCATCTTACCATAT
* *
38779756 A-AGGGCAAAATAGTCATTTTATCATAT
1 ATAGGGCAAAATAGTCATCTTACCATAT
38779783 ATAGGG
1 ATAGGG
38779789 GGTCTAGGTA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
27 23 0.77
28 6 0.20
29 1 0.03
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.29
Consensus pattern (28 bp):
ATAGGGCAAAATAGTCATCTTACCATAT
Found at i:38784433 original size:20 final size:19
Alignment explanation
Indices: 38784400--38784438 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 19
38784390 CATCTCGTTG
38784400 AGCTCAATTCAGCTCGTTTC
1 AGCTCAATTCAGCTC-TTTC
38784420 AGCTCAA-TCGAGCTCTTTC
1 AGCTCAATTC-AGCTCTTTC
38784439 TTATTTCTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.21, C:0.31, G:0.15, T:0.33
Consensus pattern (19 bp):
AGCTCAATTCAGCTCTTTC
Found at i:38787396 original size:15 final size:16
Alignment explanation
Indices: 38787373--38787402 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
38787363 AAACTAAACA
38787373 AAAACAAAAGAAAAAG
1 AAAACAAAAGAAAAAG
38787389 AAAA-AAAAGAAAAA
1 AAAACAAAAGAAAAA
38787403 CAATGTACTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.87, C:0.03, G:0.10, T:0.00
Consensus pattern (16 bp):
AAAACAAAAGAAAAAG
Found at i:38790865 original size:11 final size:11
Alignment explanation
Indices: 38790849--38790875 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
38790839 ATGTAATACT
38790849 TTACAGTTCAA
1 TTACAGTTCAA
38790860 TTACAGTTCAA
1 TTACAGTTCAA
38790871 TTACA
1 TTACA
38790876 TTTCTCACGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.37, C:0.19, G:0.07, T:0.37
Consensus pattern (11 bp):
TTACAGTTCAA
Found at i:38792396 original size:69 final size:67
Alignment explanation
Indices: 38792305--38792444 Score: 199
Period size: 67 Copynumber: 2.1 Consensus size: 67
38792295 TCAACAGATA
* * *
38792305 CAGATATTGTGGCCAGGCCACCAGAACATATATATATGTGGCGAAGCCACCAGATTACAGCGAGG
1 CAGATATTGTGACCAAGCCACCAGAAC--AGATATATGTGGCGAAGCCACCAGATTACAGCGAGG
38792370 CTGC
64 CTGC
* * * *
38792374 CAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCT
1 CAGATATTGTGACCAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTACAGCGAGGCT
38792439 GC
66 GC
38792441 CAGA
1 CAGA
38792445 ATGCTTCCTC
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
67 41 0.64
69 23 0.36
ACGTcount: A:0.31, C:0.24, G:0.28, T:0.18
Consensus pattern (67 bp):
CAGATATTGTGACCAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTACAGCGAGGCT
GC
Found at i:38792422 original size:27 final size:26
Alignment explanation
Indices: 38792374--38792425 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
38792364 GCGAGGCTGC
*
38792374 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
38792400 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
38792426 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:38793476 original size:45 final size:45
Alignment explanation
Indices: 38793412--38793501 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
38793402 AGAAAAACCA
38793412 AAATATATTGCAAGAGCCAAGACTTGAACCTTGGACCCCTTGCTT
1 AAATATATTGCAAGAGCCAAGACTTGAACCTTGGACCCCTTGCTT
38793457 AAATATATTGCAAGAGCCAAGACTTGAACCTTGGACCCCTTGCTT
1 AAATATATTGCAAGAGCCAAGACTTGAACCTTGGACCCCTTGCTT
38793502 CCTTTATGGT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (45 bp):
AAATATATTGCAAGAGCCAAGACTTGAACCTTGGACCCCTTGCTT
Found at i:38796568 original size:40 final size:40
Alignment explanation
Indices: 38796520--38796748 Score: 386
Period size: 40 Copynumber: 5.7 Consensus size: 40
38796510 GCTACTCACT
38796520 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
38796560 CAATTGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
38796600 CAATTGCCTTCAGGACTTGGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
38796640 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
38796680 CAAATGCCTTCCGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
38796720 CAAATGCCTTCGGGACTTAGCCCGATTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
38796749 CAATCTGAAT
Statistics
Matches: 178, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 178 1.00
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:38797987 original size:11 final size:10
Alignment explanation
Indices: 38797970--38797994 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
38797960 GAGGATGAAG
38797970 CTTTTTTTTT
1 CTTTTTTTTT
38797980 CTTTTTTTTT
1 CTTTTTTTTT
38797990 CTTTT
1 CTTTT
38797995 AGGTACGGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (10 bp):
CTTTTTTTTT
Found at i:38804669 original size:40 final size:40
Alignment explanation
Indices: 38804599--38804860 Score: 393
Period size: 40 Copynumber: 6.6 Consensus size: 40
38804589 AAACCAAGTA
** * *
38804599 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
* *
38804638 CCTTTGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
38804678 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
38804718 CCTTCAGGACTTGGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
38804758 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
38804798 CCTTCCGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
38804838 CCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
38804861 CAATCCGAAT
Statistics
Matches: 205, Mismatches: 16, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
39 12 0.06
40 193 0.94
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:38807297 original size:15 final size:15
Alignment explanation
Indices: 38807277--38807306 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
38807267 ATTATGAAAG
38807277 ATATGTTTTGGATTA
1 ATATGTTTTGGATTA
*
38807292 ATATGTTTTGTATTA
1 ATATGTTTTGGATTA
38807307 GAATTTTTGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.00, G:0.17, T:0.57
Consensus pattern (15 bp):
ATATGTTTTGGATTA
Found at i:38807927 original size:43 final size:43
Alignment explanation
Indices: 38807866--38808007 Score: 203
Period size: 43 Copynumber: 3.3 Consensus size: 43
38807856 GATATGTGAT
* * * *
38807866 ATCGATATGTGATCACGTGTAAGGCCACGTCTGGGATGTTAGC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGC
* *
38807909 ATCGATATGTGATTACGTGTAAGACCACGTCTAGAACGTTGGC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGC
* * *
38807952 ATTGATATGTGATTATGTGTAAGACCACGTTTGGGACGTTGGC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGC
38807995 ATCGATATGTGAT
1 ATCGATATGTGAT
38808008 CGAATGTGTA
Statistics
Matches: 87, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 87 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.31
Consensus pattern (43 bp):
ATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGC
Found at i:38813368 original size:15 final size:15
Alignment explanation
Indices: 38813336--38813364 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
38813326 ATTTTCTGTG
38813336 TTTATAATGTGTGAA
1 TTTATAATGTGTGAA
38813351 TTTAT-ATGTGTGAA
1 TTTATAATGTGTGAA
38813365 ATTTTCATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.31, C:0.00, G:0.21, T:0.48
Consensus pattern (15 bp):
TTTATAATGTGTGAA
Found at i:38814523 original size:43 final size:43
Alignment explanation
Indices: 38814430--38814726 Score: 413
Period size: 43 Copynumber: 7.0 Consensus size: 43
38814420 GATATGTAAT
38814430 ATCGATATGTGATTACGTGTAAGACCACG-CTGGGACGTTGGC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGC
* ** *
38814472 ATCAATATGTGATTACGTGTAAGACCACGTCTGGGACACTAGC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGC
*
38814515 ATCGATATGTGATTATGTGTAAGACCACGTCTGGGACGTTGGC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGC
* * *
38814558 ATCGATATGTGATTATGTGTAAGACCACATCTGGGACGTTGGT
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGC
* * *
38814601 ATCGATATGTGATTACATGTAAGTCCAAGTCTGGGACGTTGGC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGC
38814644 ATCGATATGTGATTACGT-TAAGACC-CTGTCTGGGACAG-TGGC
1 ATCGATATGTGATTACGTGTAAGACCAC-GTCTGGGAC-GTTGGC
* * * *
38814686 ATCGATATGTGATTACATGTAAGACTACGTCTAGAACGTTG
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTG
38814727 ACATTGTACG
Statistics
Matches: 225, Mismatches: 24, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
42 65 0.29
43 159 0.71
44 1 0.00
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.29
Consensus pattern (43 bp):
ATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGC
Found at i:38814691 original size:128 final size:128
Alignment explanation
Indices: 38814430--38814710 Score: 406
Period size: 128 Copynumber: 2.2 Consensus size: 128
38814420 GATATGTAAT
*
38814430 ATCGATATGTGATTACGTGTAAGACCACGCTGGGACGTTGGCATCAATATGTGATTACGTGTAAG
1 ATCGATATGTGATTACGTGTAAGACCACGCTGGGACGTTGGCATCAATATGTGATTACATGTAAG
* *
38814495 ACCACGTCTGGGACACTAGCATCGATATGTGATTATGTGTAAGACCACGTCTGGGACGTTGGC
66 ACCAAGTCTGGGACACTAGCATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGC
* * * *
38814558 ATCGATATGTGATTATGTGTAAGACCACATCTGGGACGTTGGTATCGATATGTGATTACATGTAA
1 ATCGATATGTGATTACGTGTAAGACCAC-GCTGGGACGTTGGCATCAATATGTGATTACATGTAA
* ** *
38814623 GTCCAAGTCTGGGACGTTGGCATCGATATGTGATTACGT-TAAGACC-CTGTCTGGGACAG-TGG
65 GACCAAGTCTGGGACACTAGCATCGATATGTGATTACGTGTAAGACCAC-GTCTGGGAC-GTTGG
38814685 C
128 C
*
38814686 ATCGATATGTGATTACATGTAAGAC
1 ATCGATATGTGATTACGTGTAAGAC
38814711 TACGTCTAGA
Statistics
Matches: 137, Mismatches: 13, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
127 1 0.01
128 70 0.51
129 66 0.48
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.29
Consensus pattern (128 bp):
ATCGATATGTGATTACGTGTAAGACCACGCTGGGACGTTGGCATCAATATGTGATTACATGTAAG
ACCAAGTCTGGGACACTAGCATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGC
Found at i:38814924 original size:19 final size:18
Alignment explanation
Indices: 38814900--38814943 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
38814890 GATACTAATT
38814900 ATATATGATGCAAATGAAA
1 ATATAT-ATGCAAATGAAA
* *
38814919 ATATATATGTATATGAAA
1 ATATATATGCAAATGAAA
38814937 ACTATAT
1 A-TATAT
38814944 TCGGCCAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 11 0.50
19 11 0.50
ACGTcount: A:0.50, C:0.05, G:0.11, T:0.34
Consensus pattern (18 bp):
ATATATATGCAAATGAAA
Found at i:38820018 original size:26 final size:26
Alignment explanation
Indices: 38819989--38820096 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
38819979 TGATACAAAT
38819989 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
38820015 TGATAATGGATTAGGTAAATATTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
38820041 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
38820067 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
38820093 TGAT
1 TGAT
38820097 GGGAATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:38821609 original size:26 final size:26
Alignment explanation
Indices: 38821580--38821632 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
38821570 TTTACAGTTT
*
38821580 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCATAGG-GATAAATTGACCGAAA
* *
38821606 TACCCATAGGGTTAAATTGACCTAAA
1 TACCCATAGGGATAAATTGACCGAAA
38821632 T
1 T
38821633 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.40, C:0.21, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCATAGGGATAAATTGACCGAAA
Found at i:38822854 original size:37 final size:37
Alignment explanation
Indices: 38822790--38822861 Score: 117
Period size: 37 Copynumber: 1.9 Consensus size: 37
38822780 AGCTCAGACG
*
38822790 AAATCTCCACACGAAGTTATCGAGTCTTACCCGGACA
1 AAATCTCCACACGAAGTCATCGAGTCTTACCCGGACA
* *
38822827 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGAAGTCATCGAGTCTTACCCGGA
38822862 ATATATTTCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGAAGTCATCGAGTCTTACCCGGACA
Found at i:38823133 original size:48 final size:48
Alignment explanation
Indices: 38823007--38823191 Score: 291
Period size: 48 Copynumber: 3.8 Consensus size: 48
38822997 GCACATCGCC
*
38823007 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
38823057 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
* *
38823105 TACATATTTCACATTAGTCATTCAGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
38823153 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
38823192 TGCATGTTCA
Statistics
Matches: 124, Mismatches: 9, Indels: 6
0.89 0.06 0.04
Matches are distributed among these distances:
48 80 0.65
49 2 0.02
50 42 0.34
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:38823196 original size:98 final size:97
Alignment explanation
Indices: 38823007--38823190 Score: 300
Period size: 98 Copynumber: 1.9 Consensus size: 97
38822997 GCACATCGCC
* *
38823007 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCA-ATACATATTTCACATT
38823072 GACCATTCGGCTTTACCACATATGCATATCTCA
65 GACCATTCGGCTTTACCACATATGCATATCTCA
* *
38823105 TACATATTTCACATTAGTCATTCAGCTTTACCACATATACATATCTC-ATACATATTTCACATT-
1 TACATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCAATACATATTTCACATTG
38823168 AGCCATTCGGCTTTACCACATAT
66 A-CCATTCGGCTTTACCACATAT
38823191 ATGCATGTTC
Statistics
Matches: 81, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
95 1 0.01
96 36 0.44
98 44 0.54
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (97 bp):
TACATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCAATACATATTTCACATTG
ACCATTCGGCTTTACCACATATGCATATCTCA
Found at i:38823224 original size:47 final size:47
Alignment explanation
Indices: 38823162--38823354 Score: 278
Period size: 47 Copynumber: 4.1 Consensus size: 47
38823152 ATACATATTT
* * * *
38823162 CACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCAC
1 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAC
* * *
38823209 CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCAT
1 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAC
*
38823256 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAT
1 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAC
* * **
38823303 CACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCAC
1 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAC
38823350 CACAT
1 CACAT
38823355 AAAATCCTAA
Statistics
Matches: 132, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 132 1.00
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.32
Consensus pattern (47 bp):
CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAC
Found at i:38823281 original size:22 final size:22
Alignment explanation
Indices: 38823254--38823325 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
38823244 GCTCACATTC
38823254 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
38823276 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
38823300 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
38823323 ATC
1 ATC
38823326 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:38826071 original size:21 final size:21
Alignment explanation
Indices: 38826041--38826090 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
38826031 CTTACAATGC
*
38826041 CATATCCTAGATATGGTCTTA
1 CATATTCTAGATATGGTCTTA
38826062 CATATTCTAGATATGGTCTTA
1 CATATTCTAGATATGGTCTTA
38826083 CATATTCT
1 CATATTCT
38826091 CACATATCGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.28, C:0.18, G:0.12, T:0.42
Consensus pattern (21 bp):
CATATTCTAGATATGGTCTTA
Found at i:38826506 original size:40 final size:40
Alignment explanation
Indices: 38826473--38826784 Score: 527
Period size: 40 Copynumber: 7.8 Consensus size: 40
38826463 CCAGCATGAT
* * * *
38826473 TGCTCTTCGGGACCTAG-CGCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGTC-CGGATACATCACTAGCACGAA
* *
38826513 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
38826553 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
38826593 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
*
38826633 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
38826673 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
38826713 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
* *
38826753 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGTCCGGATACATCACT
38826785 CTCAATTCTC
Statistics
Matches: 260, Mismatches: 11, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
40 259 1.00
41 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
Found at i:38828291 original size:48 final size:48
Alignment explanation
Indices: 38828238--38828400 Score: 299
Period size: 48 Copynumber: 3.4 Consensus size: 48
38828228 ACCTTTCACA
38828238 ATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTAGCC
1 ATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTAGCC
*
38828286 ATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTAGTC
1 ATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTAGCC
* *
38828334 ATTCAGCTTTACCACATATACATATCTCATACATATTTCACATTAGCC
1 ATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTAGCC
38828382 ATTCGGCTTTACCACATAT
1 ATTCGGCTTTACCACATAT
38828401 ATGCATGTTC
Statistics
Matches: 110, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 110 1.00
ACGTcount: A:0.30, C:0.26, G:0.07, T:0.36
Consensus pattern (48 bp):
ATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTAGCC
Found at i:38828434 original size:47 final size:47
Alignment explanation
Indices: 38828371--38828564 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
38828361 CATACATATT
* * * *
38828371 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
38828418 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
38828465 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
38828512 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
38828559 TCACAT
1 TCACAT
38828565 AAAATCCTAA
Statistics
Matches: 133, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 133 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:38828491 original size:22 final size:22
Alignment explanation
Indices: 38828464--38828535 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
38828454 GCTCACATTC
38828464 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
38828486 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
38828510 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
38828533 ATC
1 ATC
38828536 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:38831643 original size:40 final size:40
Alignment explanation
Indices: 38831606--38831789 Score: 198
Period size: 40 Copynumber: 4.6 Consensus size: 40
38831596 GCTACTCGTT
*
38831606 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
38831646 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* * *
38831686 CCAATGCCTTCGGG-CTTAGCCCAG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * * *
38831725 CAAATGCCTTC-GGATCTTAGTCCAGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
38831766 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
38831790 ACATCATTCG
Statistics
Matches: 122, Mismatches: 14, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 76 0.62
41 14 0.11
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:38831774 original size:79 final size:80
Alignment explanation
Indices: 38831606--38831787 Score: 201
Period size: 79 Copynumber: 2.3 Consensus size: 80
38831596 GCTACTCGTT
* ** *
38831606 CAAATGCCTTCGGGACATAGCCC-GGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCAGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCA
* *
38831670 GATTTAGTAACTCGCAC
64 GATATAGTAACTAGCAC
* **
38831687 CAATGCCTTCGGG-CTTAGCCCAGAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCAG
1 CAAAGCCTTCGGGACTTAGCCCAGAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCAG
* *
38831750 ATATGGTCACTTAGCA-
65 ATATAGTAAC-TAGCAC
38831766 CAAAGCCTTCGGGACTTAGCCC
1 CAAAGCCTTCGGGACTTAGCCC
38831788 GGACATCATT
Statistics
Matches: 85, Mismatches: 12, Indels: 9
0.80 0.11 0.08
Matches are distributed among these distances:
78 3 0.04
79 56 0.66
80 23 0.27
81 3 0.04
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCAGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAGA
TATAGTAACTAGCAC
Found at i:38837561 original size:414 final size:412
Alignment explanation
Indices: 38836793--38837621 Score: 1604
Period size: 414 Copynumber: 2.0 Consensus size: 412
38836783 GACGGGAACA
38836793 TCATCCAAATCCTGTATTAACATATAATTAATTTTTAGTAAAGAAAGGTCAAGCTGTCAAACAAC
1 TCATCCAAATCCTGTATTAACATATAATTAATTTTTAGTAAAGAAAGGTCAAGCTGTCAAACAAC
*
38836858 AGAACAGGGGTAACTTTGAAGAATAAACTATACTTATTGGCTAGTCCATAAATTCTGAAAATTTT
66 AGAACAGGGGTAACTTTAAAGAATAAACTATACTTATTGGCTAGTCCATAAATTCTGAAAATTTT
38836923 ATGGTAGAAAGATATATGAGTCTAGTTTCAAATTATTTTAATATATATTAATTTAGAATTCTGTA
131 ATGGTAGAAAGATATATGAGTCTAGTTTCAAATTATTTTAATATATATTAATTTAGAATTCTGTA
38836988 GCTCAAGTTATAAATAATTGAGTGACTATCACTCAAGTGGACAGCTTGTCATGAATATAAGTAAA
196 GCTCAAGTTATAAATAATTGAGTGACTATCACTCAAGTGGACAGCTTGTCATGAATATAAGTAAA
38837053 AAGGTGCAAACATGATTGTATTACCTTGAGATCATGTTGTGAGAATTTGTAGAAGCATGTTAATA
261 AAGGTGCAAACATGATTGTATTACCTTGAGATCATGTTGTGAGAATTTGTAGAAGCATGTTAATA
38837118 AAATGCTTATTATTTTCATATGGACTTACTAAGATATAAAGCTTACTCCCCTTCTTTTCCCATCT
326 AAATGCTTATTATTTTCATATGGACTTACTAAGATATAAAGCTTACTCCCCTTCTTTTCCCATCT
38837183 CTTATAGGTTAATTTAACTAGC
391 CTTATAGGTTAATTTAACTAGC
38837205 TCATCCAAATCCTGTATTAACATATAATTAATTTTTAGTAAAGAAAGGTCAAGCTGTCAAACAAC
1 TCATCCAAATCCTGTATTAACATATAATTAATTTTTAGTAAAGAAAGGTCAAGCTGTCAAACAAC
38837270 AGAACAGGGGTAACTTTAAAGAATAAACTATACTTATTGGCTAGTCCATAAATTCTGAAAATTTT
66 AGAACAGGGGTAACTTTAAAGAATAAACTATACTTATTGGCTAGTCCATAAATTCTGAAAATTTT
38837335 ATGGTAGAAAGATATATGAGTCTAGTTTCAAATTATTTTAATATATATATTAATTTAGAATTCTG
131 ATGGTAGAAAGATATATGAGTCTAGTTTCAAATTATTTT-A-ATATATATTAATTTAGAATTCTG
* *
38837400 TAGCTCAAGTTATAAATAATTGAGTGACTATCACTCGAGTGGATAGCTTGTCATGAATATAAGTA
194 TAGCTCAAGTTATAAATAATTGAGTGACTATCACTCAAGTGGACAGCTTGTCATGAATATAAGTA
38837465 AAAAGGTGCAAACATGATTGTATTACCTTGAGATCATGTTGTGAGAATTTGTAGAAGCATGTTAA
259 AAAAGGTGCAAACATGATTGTATTACCTTGAGATCATGTTGTGAGAATTTGTAGAAGCATGTTAA
*
38837530 TAAAATGCTTATTATTTTCATATGGACTTACTAAGATTTAAAGCTTACTCCCCTTCTTTTCCCAT
324 TAAAATGCTTATTATTTTCATATGGACTTACTAAGATATAAAGCTTACTCCCCTTCTTTTCCCAT
38837595 CTCTTATAGGTTAATTTAACTAGC
389 CTCTTATAGGTTAATTTAACTAGC
38837619 TCA
1 TCA
38837622 GGTTGGAGAT
Statistics
Matches: 411, Mismatches: 4, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
412 168 0.41
413 1 0.00
414 242 0.59
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (412 bp):
TCATCCAAATCCTGTATTAACATATAATTAATTTTTAGTAAAGAAAGGTCAAGCTGTCAAACAAC
AGAACAGGGGTAACTTTAAAGAATAAACTATACTTATTGGCTAGTCCATAAATTCTGAAAATTTT
ATGGTAGAAAGATATATGAGTCTAGTTTCAAATTATTTTAATATATATTAATTTAGAATTCTGTA
GCTCAAGTTATAAATAATTGAGTGACTATCACTCAAGTGGACAGCTTGTCATGAATATAAGTAAA
AAGGTGCAAACATGATTGTATTACCTTGAGATCATGTTGTGAGAATTTGTAGAAGCATGTTAATA
AAATGCTTATTATTTTCATATGGACTTACTAAGATATAAAGCTTACTCCCCTTCTTTTCCCATCT
CTTATAGGTTAATTTAACTAGC
Found at i:38840111 original size:23 final size:24
Alignment explanation
Indices: 38840062--38840118 Score: 71
Period size: 23 Copynumber: 2.4 Consensus size: 24
38840052 CCAGTTCATA
* **
38840062 AGAGCTTACTATTCTCAGCTCGTT
1 AGAGCTTACTATTCTCAGATCAAT
*
38840086 AGAGCTTTCTATT-TCAGATCAAT
1 AGAGCTTACTATTCTCAGATCAAT
38840109 AGAGCTTACT
1 AGAGCTTACT
38840119 GTCCATCAGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
23 16 0.57
24 12 0.43
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (24 bp):
AGAGCTTACTATTCTCAGATCAAT
Found at i:38847044 original size:40 final size:40
Alignment explanation
Indices: 38846958--38847326 Score: 436
Period size: 40 Copynumber: 9.3 Consensus size: 40
38846948 AAAGGCACAC
* * *
38846958 ATGTGCATTAAGGGGTGCCGAAGTACAATTA-GGGCACGT
1 ATGTGCATTCAGGGGTACCGAAGTACAATCAGGGGCACGT
* ** * *
38846997 ATGTGCATTTAGGGGTGTCAAAGTACAATCAGGGGCACAT
1 ATGTGCATTCAGGGGTACCGAAGTACAATCAGGGGCACGT
* * * *
38847037 ATGTGCATTCAGAGGTACCAAAGAACAATCAGGGGCGCGT
1 ATGTGCATTCAGGGGTACCGAAGTACAATCAGGGGCACGT
* * *
38847077 ATGTGCATTTAGGGGTACCGAAGTACAATTAGGGGAACGT
1 ATGTGCATTCAGGGGTACCGAAGTACAATCAGGGGCACGT
* *
38847117 ATGTGCATTC-GGGGTACCAAAGTACAATCTGGGGCACGT
1 ATGTGCATTCAGGGGTACCGAAGTACAATCAGGGGCACGT
* * *
38847156 ATGTGCATTCAGAGGTACTGAAGTACAATCAGGGGCACAT
1 ATGTGCATTCAGGGGTACCGAAGTACAATCAGGGGCACGT
* * *
38847196 ATGTGCATTCATGGGTACCGAAGTACAATCAAGGTCACGT
1 ATGTGCATTCAGGGGTACCGAAGTACAATCAGGGGCACGT
* ** * *
38847236 ATGTGCATTCAGGGGTACCGAAGTATAATCAATGTCATGT
1 ATGTGCATTCAGGGGTACCGAAGTACAATCAGGGGCACGT
* * * *
38847276 ATGTGCATTCAAGGGTACTGAAATACAACCAGGGGCACGT
1 ATGTGCATTCAGGGGTACCGAAGTACAATCAGGGGCACGT
38847316 ATGTGCATTCA
1 ATGTGCATTCA
38847327 TACAATAATT
Statistics
Matches: 280, Mismatches: 48, Indels: 3
0.85 0.15 0.01
Matches are distributed among these distances:
39 62 0.22
40 218 0.78
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (40 bp):
ATGTGCATTCAGGGGTACCGAAGTACAATCAGGGGCACGT
Found at i:38847169 original size:119 final size:118
Alignment explanation
Indices: 38846958--38847324 Score: 441
Period size: 119 Copynumber: 3.1 Consensus size: 118
38846948 AAAGGCACAC
* * **
38846958 ATGTGCATTAAGGGGTGCCGAAGTACAATTAGGGCACGTATGTGCATTTAGGGGTGTCAAAGTAC
1 ATGTGCATTAAGGGGTACCGAAGTACAATTAGGGCACGTATGTGCA-TTCGGGGTACCAAAGTAC
* * *
38847023 AATCAGGGGCACATATGTGCATTCAGAGGTACCAAAGAACAATCAGGGGCGCGT
65 AATCAGGGGCACGTATGTGCATTCAGAGGTACCAAAGTACAATCAGGGGCACGT
* *
38847077 ATGTGCATTTAGGGGTACCGAAGTACAATTAGGGGAACGTATGTGCATTCGGGGTACCAAAGTAC
1 ATGTGCATTAAGGGGTACCGAAGTACAATTA-GGGCACGTATGTGCATTCGGGGTACCAAAGTAC
* ** *
38847142 AATCTGGGGCACGTATGTGCATTCAGAGGTACTGAAGTACAATCAGGGGCACAT
65 AATCAGGGGCACGTATGTGCATTCAGAGGTACCAAAGTACAATCAGGGGCACGT
* * * * *
38847196 ATGTGCATTCATGGGTACCGAAGTACAATCAAGGTCACGTATGTGCATTCAGGGGTACCGAAGTA
1 ATGTGCATTAAGGGGTACCGAAGTACAAT-TAGGGCACGTATGTGCATTC-GGGGTACCAAAGTA
* ** * * * *
38847261 TAATCAATGTCATGTATGTGCATTCA-AGGGTACTGAAA-TACAACCAGGGGCACGT
64 CAATCAGGGGCACGTATGTGCATTCAGA-GGTAC-CAAAGTACAATCAGGGGCACGT
38847316 ATGTGCATT
1 ATGTGCATT
38847325 CATACAATAA
Statistics
Matches: 214, Mismatches: 29, Indels: 9
0.85 0.12 0.04
Matches are distributed among these distances:
119 135 0.63
120 77 0.36
121 2 0.01
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (118 bp):
ATGTGCATTAAGGGGTACCGAAGTACAATTAGGGCACGTATGTGCATTCGGGGTACCAAAGTACA
ATCAGGGGCACGTATGTGCATTCAGAGGTACCAAAGTACAATCAGGGGCACGT
Found at i:38857012 original size:16 final size:17
Alignment explanation
Indices: 38856991--38857024 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
38856981 AAATAGCTAG
*
38856991 AATAAATAAAC-ACTAA
1 AATAAACAAACAACTAA
38857007 AATAAACAAACAACTAA
1 AATAAACAAACAACTAA
38857024 A
1 A
38857025 CCGATTAAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.71, C:0.15, G:0.00, T:0.15
Consensus pattern (17 bp):
AATAAACAAACAACTAA
Found at i:38858774 original size:12 final size:12
Alignment explanation
Indices: 38858757--38858793 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
38858747 GACAGCTGTA
38858757 TCACAGGCCGTG
1 TCACAGGCCGTG
*
38858769 TCACAGGCCATG
1 TCACAGGCCGTG
*
38858781 CCACAGGCCGTG
1 TCACAGGCCGTG
38858793 T
1 T
38858794 GCTAGACTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.19, C:0.35, G:0.30, T:0.16
Consensus pattern (12 bp):
TCACAGGCCGTG
Found at i:38861466 original size:27 final size:27
Alignment explanation
Indices: 38861428--38861489 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
38861418 CAAAATAGTC
* * *
38861428 ATTTTACCCTACAGGGGTACTTAGGTA
1 ATTTTACACTACAAGGGTACTTAGATA
* *
38861455 ATTTTACACTACAAGGGTATTTCGATA
1 ATTTTACACTACAAGGGTACTTAGATA
38861482 ATTTTACA
1 ATTTTACA
38861490 AATCGGGGGT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTACTTAGATA
Found at i:38861526 original size:27 final size:27
Alignment explanation
Indices: 38861452--38861553 Score: 91
Period size: 27 Copynumber: 3.8 Consensus size: 27
38861442 GGGTACTTAG
*
38861452 GTAATTTTAC-ACTACAAGGGTATTTC-
1 GTAATTTTACAAAT-CAAGGGTATTTCA
** *
38861478 GATAATTTTACAAATCGGGGGTATCTCA
1 G-TAATTTTACAAATCAAGGGTATTTCA
* *
38861506 GTAATTTTACAAGTCAAGGGTATTTTA
1 GTAATTTTACAAATCAAGGGTATTTCA
* * *
38861533 GTAATTTCAAAAATCGAGGGT
1 GTAATTTTACAAATCAAGGGT
38861554 GATACGTGAT
Statistics
Matches: 60, Mismatches: 13, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
26 1 0.02
27 56 0.93
28 3 0.05
ACGTcount: A:0.33, C:0.12, G:0.20, T:0.35
Consensus pattern (27 bp):
GTAATTTTACAAATCAAGGGTATTTCA
Found at i:38876165 original size:55 final size:55
Alignment explanation
Indices: 38876031--38876172 Score: 167
Period size: 55 Copynumber: 2.6 Consensus size: 55
38876021 TATAAAGGTC
* ** * *
38876031 CACACCCGTGTTGTTTTGACAGGTTCACCCACGGTTGCTTGGCACTGGCGTGTCG
1 CACACCCGTGTTGTTTTGACAGGTTCGCCCACGGTTGCAAGGCACGGGCATGTCG
* ** * *
38876086 CACACCCATGTTAATTTGACAGGTTCGGCCACGGTTTCAAGGCACGGGCATGTCG
1 CACACCCGTGTTGTTTTGACAGGTTCGCCCACGGTTGCAAGGCACGGGCATGTCG
* **
38876141 CACGCCCGTGTTGTTTTGGTAGGTTCGCCCAC
1 CACACCCGTGTTGTTTTGACAGGTTCGCCCAC
38876173 AGCCATGTTG
Statistics
Matches: 70, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
55 70 1.00
ACGTcount: A:0.15, C:0.29, G:0.28, T:0.27
Consensus pattern (55 bp):
CACACCCGTGTTGTTTTGACAGGTTCGCCCACGGTTGCAAGGCACGGGCATGTCG
Found at i:38880270 original size:13 final size:13
Alignment explanation
Indices: 38880252--38880278 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
38880242 GCTCAACAGG
38880252 GACACGCCCGTGT
1 GACACGCCCGTGT
38880265 GACACGCCCGTGT
1 GACACGCCCGTGT
38880278 G
1 G
38880279 CGATTACTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:38883785 original size:15 final size:15
Alignment explanation
Indices: 38883765--38883793 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
38883755 TGTTGTTTAA
38883765 AAACAGTTATAAATC
1 AAACAGTTATAAATC
38883780 AAACAGTTATAAAT
1 AAACAGTTATAAAT
38883794 TGAAGTAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.10, G:0.07, T:0.28
Consensus pattern (15 bp):
AAACAGTTATAAATC
Found at i:38885001 original size:27 final size:27
Alignment explanation
Indices: 38884955--38885006 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
38884945 TCATTGTACC
*
38884955 CTACAAGGGTACTTAAGTAATTTTACA
1 CTACAAGGGTACTTAAGTAAATTTACA
* **
38884982 CTACAAGGGTATTTCGGTAAATTTA
1 CTACAAGGGTACTTAAGTAAATTTA
38885007 TAAATCGAAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (27 bp):
CTACAAGGGTACTTAAGTAAATTTACA
Found at i:38885071 original size:26 final size:27
Alignment explanation
Indices: 38884987--38885096 Score: 75
Period size: 27 Copynumber: 4.1 Consensus size: 27
38884977 TTACACTACA
* * * *
38884987 AGGGTATTTCGGTAAATTTATAAATCG
1 AGGGTATTACGATAATTTTACAAATCG
* *
38885014 AAGGTATTTTA-G-TAATTTTACAAGTCG
1 AGGGTA--TTACGATAATTTTACAAATCG
* * *
38885041 GGGGT-TTTCGATAATTTTACAAATTG
1 AGGGTATTACGATAATTTTACAAATCG
* *
38885067 AGGGTATTACGGTAATTTCACAAATC-
1 AGGGTATTACGATAATTTTACAAATCG
38885093 AGGG
1 AGGG
38885097 GTTTTAACAA
Statistics
Matches: 63, Mismatches: 15, Indels: 11
0.71 0.17 0.12
Matches are distributed among these distances:
24 2 0.03
25 1 0.02
26 21 0.33
27 36 0.57
28 1 0.02
29 2 0.03
ACGTcount: A:0.32, C:0.09, G:0.23, T:0.36
Consensus pattern (27 bp):
AGGGTATTACGATAATTTTACAAATCG
Found at i:38887924 original size:16 final size:18
Alignment explanation
Indices: 38887905--38887939 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
38887895 GCCATATGAA
38887905 TTCCAAAAC-ATA-ATAG
1 TTCCAAAACGATAGATAG
38887921 TTCCAAAACGATAGATAG
1 TTCCAAAACGATAGATAG
38887939 T
1 T
38887940 GTGACGAGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 9 0.53
17 3 0.18
18 5 0.29
ACGTcount: A:0.46, C:0.17, G:0.11, T:0.26
Consensus pattern (18 bp):
TTCCAAAACGATAGATAG
Found at i:38888478 original size:40 final size:41
Alignment explanation
Indices: 38888434--38888511 Score: 104
Period size: 40 Copynumber: 1.9 Consensus size: 41
38888424 ACTAGTAATT
**
38888434 AGCCTGCTAGGTTTTAAACCCGAATTCA-TCACCGGCACGA
1 AGCCTGCTAGACTTTAAACCCGAATTCATTCACCGGCACGA
** *
38888474 AGCCTGCTAGACTTTAAGTCTGAATTCATTCACCGGCA
1 AGCCTGCTAGACTTTAAACCCGAATTCATTCACCGGCA
38888512 TTTCGCCTGC
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
40 23 0.72
41 9 0.28
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (41 bp):
AGCCTGCTAGACTTTAAACCCGAATTCATTCACCGGCACGA
Found at i:38888610 original size:43 final size:43
Alignment explanation
Indices: 38888502--38888622 Score: 174
Period size: 42 Copynumber: 2.9 Consensus size: 43
38888492 TCTGAATTCA
*
38888502 TTCACCGGCATT-TCGCCTGCTAGGCTTGAAGCCCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCTTGAAGCCCGATATTAT
* * * *
38888544 TT-ACCGGCATTATAACCTACTAGGCTCGAGGCCCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCTTGAAGCCCGATATTAT
*
38888586 TTCACCGGTATTATAGCCTGCTAGGCTTGAAGCCCGA
1 TTCACCGGCATTATAGCCTGCTAGGCTTGAAGCCCGA
38888623 ATTCATCATA
Statistics
Matches: 67, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
41 9 0.13
42 29 0.43
43 29 0.43
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.29
Consensus pattern (43 bp):
TTCACCGGCATTATAGCCTGCTAGGCTTGAAGCCCGATATTAT
Found at i:38894255 original size:20 final size:22
Alignment explanation
Indices: 38894228--38894283 Score: 89
Period size: 20 Copynumber: 2.6 Consensus size: 22
38894218 ATAGTCAAGA
38894228 TGGCACAAAGCCATTTTTAGG-
1 TGGCACAAAGCCATTTTTAGGT
38894249 T-GCACAAAGCCATTTTTAGGT
1 TGGCACAAAGCCATTTTTAGGT
*
38894270 TGGCATAAAGCCAT
1 TGGCACAAAGCCAT
38894284 AATCAGATTA
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
20 19 0.59
21 2 0.06
22 11 0.34
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (22 bp):
TGGCACAAAGCCATTTTTAGGT
Found at i:38894693 original size:27 final size:27
Alignment explanation
Indices: 38894639--38894727 Score: 94
Period size: 27 Copynumber: 3.3 Consensus size: 27
38894629 CAAAACAATC
* *
38894639 ATTTTACCCTACAAGGGTACTT-AGGTA
1 ATTTTACACTACAAGGGTATTTCA-GTA
38894666 ATTTTACACTACAAGGGTATTTCAGTAA
1 ATTTTACACTACAAGGGTATTTCAGT-A
* *
38894694 ATTTATA-AAT-CGAGGGTATTTCAGTA
1 ATTT-TACACTACAAGGGTATTTCAGTA
38894720 ATTTTACA
1 ATTTTACA
38894728 AGTCAGGGGT
Statistics
Matches: 54, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
25 2 0.04
26 6 0.11
27 36 0.67
28 8 0.15
29 2 0.04
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.37
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATTTCAGTA
Found at i:38894737 original size:27 final size:27
Alignment explanation
Indices: 38894663--38894757 Score: 79
Period size: 27 Copynumber: 3.5 Consensus size: 27
38894653 GGGTACTTAG
* *
38894663 GTAATTTTAC-ACTACAAGGGTATTTCA
1 GTAATTTTACAAAT-CAGGGGTATTTCA
* *
38894690 GTAAATTTATAAATC-GAGGGTATTTCA
1 GTAATTTTACAAATCAG-GGGTATTTCA
* *
38894717 GTAATTTTACAAGTCAGGGGTGTTTC-
1 GTAATTTTACAAATCAGGGGTATTTCA
*
38894743 GATAATTTCACAAAT
1 G-TAATTTTACAAAT
38894758 TAAGAGTATT
Statistics
Matches: 54, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
26 1 0.02
27 50 0.93
28 3 0.06
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.37
Consensus pattern (27 bp):
GTAATTTTACAAATCAGGGGTATTTCA
Found at i:38897612 original size:16 final size:18
Alignment explanation
Indices: 38897593--38897627 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
38897583 GCCATATGAA
38897593 TTCCAAAAC-ATA-ATAG
1 TTCCAAAACGATAGATAG
38897609 TTCCAAAACGATAGATAG
1 TTCCAAAACGATAGATAG
38897627 T
1 T
38897628 GTGACGAGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 9 0.53
17 3 0.18
18 5 0.29
ACGTcount: A:0.46, C:0.17, G:0.11, T:0.26
Consensus pattern (18 bp):
TTCCAAAACGATAGATAG
Found at i:38898166 original size:40 final size:41
Alignment explanation
Indices: 38898122--38898199 Score: 104
Period size: 40 Copynumber: 1.9 Consensus size: 41
38898112 ACCAGTAATT
**
38898122 AGCCTGCTAGGTTTTAAACCCGAATTCA-TCACCGGCACGA
1 AGCCTGCTAGACTTTAAACCCGAATTCATTCACCGGCACGA
** *
38898162 AGCCTGCTAGACTTTAAGTCTGAATTCATTCACCGGCA
1 AGCCTGCTAGACTTTAAACCCGAATTCATTCACCGGCA
38898200 TTTCGCCTGC
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
40 23 0.72
41 9 0.28
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (41 bp):
AGCCTGCTAGACTTTAAACCCGAATTCATTCACCGGCACGA
Found at i:38898300 original size:43 final size:43
Alignment explanation
Indices: 38898190--38898310 Score: 165
Period size: 42 Copynumber: 2.9 Consensus size: 43
38898180 TCTGAATTCA
*
38898190 TTCACCGGCATT-TCGCCTGCTAGGCTTGAAGCCCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCTTGAAGCCCGATATTAT
* * * * *
38898232 TT-ACCGGCATTATAACCTACCAGGCTCGAGGCCCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCTTGAAGCCCGATATTAT
*
38898274 TTCACCGGTATTATAGCCTGCTAGGCTTGAAGCCCGA
1 TTCACCGGCATTATAGCCTGCTAGGCTTGAAGCCCGA
38898311 ATTCATCATA
Statistics
Matches: 65, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
41 9 0.14
42 28 0.43
43 28 0.43
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.28
Consensus pattern (43 bp):
TTCACCGGCATTATAGCCTGCTAGGCTTGAAGCCCGATATTAT
Found at i:38916557 original size:40 final size:40
Alignment explanation
Indices: 38916359--38916533 Score: 323
Period size: 40 Copynumber: 4.4 Consensus size: 40
38916349 TATGTGCATA
38916359 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
38916399 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
38916439 GCATTCGTGCGGGTTATTATAACAGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
38916479 GCATTCGTACGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
38916519 GCATTCGTGCTGGTT
1 GCATTCGTGCGGGTT
38916534 GTTACATCCG
Statistics
Matches: 130, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 130 1.00
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (40 bp):
GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
Found at i:38916557 original size:80 final size:80
Alignment explanation
Indices: 38916359--38916557 Score: 263
Period size: 80 Copynumber: 2.5 Consensus size: 80
38916349 TATGTGCATA
* * * * * *
38916359 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAACCG
1 GCATTCGTGCGGGTTATTACAACAGAGCTAAATCCCGAAGGCATTCGTACGGGTTATTATAACCG
38916424 GGTTAAGTCCCGAAG
66 GGTTAAGTCCCGAAG
* * * *
38916439 GCATTCGTGCGGGTTATTATAACAGGGTTAAGTCCCGAAGGCATTCGTACGGGTTATTATAACCG
1 GCATTCGTGCGGGTTATTACAACAGAGCTAAATCCCGAAGGCATTCGTACGGGTTATTATAACCG
38916504 GGTTAAGTCCCGAAG
66 GGTTAAGTCCCGAAG
* * * * *
38916519 GCATTCGTGCTGGTTGTTACATCCGAGCTAAATTCCGAA
1 GCATTCGTGCGGGTTATTACAACAGAGCTAAATCCCGAA
38916558 AGTTTTTATG
Statistics
Matches: 108, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
80 108 1.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (80 bp):
GCATTCGTGCGGGTTATTACAACAGAGCTAAATCCCGAAGGCATTCGTACGGGTTATTATAACCG
GGTTAAGTCCCGAAG
Found at i:38919575 original size:13 final size:13
Alignment explanation
Indices: 38919557--38919582 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
38919547 TCCCAAAACT
38919557 ATTGTTTTTGACA
1 ATTGTTTTTGACA
38919570 ATTGTTTTTGACA
1 ATTGTTTTTGACA
38919583 CCACTAGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.08, G:0.15, T:0.54
Consensus pattern (13 bp):
ATTGTTTTTGACA
Found at i:38923535 original size:21 final size:21
Alignment explanation
Indices: 38923482--38923551 Score: 72
Period size: 21 Copynumber: 3.3 Consensus size: 21
38923472 CAGGACCTTC
*
38923482 TAGTCCACCTTCAAGAGGAGT
1 TAGTCCACCTCCAAGAGGAGT
*
38923503 TAG-CCCCACTCCAAGAGGAGT
1 TAGTCCAC-CTCCAAGAGGAGT
*
38923524 TAGTCTACCTCCAAG-GGAAGT
1 TAGTCCACCTCCAAGAGG-AGT
*
38923545 CAGTCCA
1 TAGTCCA
38923552 ACTCAGATTA
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
20 5 0.12
21 33 0.82
22 2 0.05
ACGTcount: A:0.29, C:0.29, G:0.23, T:0.20
Consensus pattern (21 bp):
TAGTCCACCTCCAAGAGGAGT
Found at i:38923637 original size:21 final size:21
Alignment explanation
Indices: 38923607--38923660 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
38923597 ACTTCAGTTC
* *
38923607 TCAGTTCAACTTCAAGAGG-AG
1 TCAGTCCAACTCCAAG-GGTAG
38923628 TCAGTCCAACTCCAAGGGTAG
1 TCAGTCCAACTCCAAGGGTAG
*
38923649 TGAGTCCAACTC
1 TCAGTCCAACTC
38923661 GGATGAGAAC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 2 0.07
21 27 0.93
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.22
Consensus pattern (21 bp):
TCAGTCCAACTCCAAGGGTAG
Found at i:38923702 original size:105 final size:105
Alignment explanation
Indices: 38923514--38923744 Score: 309
Period size: 105 Copynumber: 2.2 Consensus size: 105
38923504 AGCCCCACTC
* * * * * *
38923514 CAAGAGGAGTTAGTCTACCTCCAAGGGAAGTCAGTCCAACTCAGATTAGGACATCCATCCCATCA
1 CAAGAGGAGTCAGTCCAACTCCAAGGGAAGTCAGTCCAACTCAGATGAGAACATCCAGCCCATCA
* *
38923579 AGTCAATCCCAAAACTCAACTTCAGTTCTCAGTTCAACTT
66 AGTCAATCCCAAAACTCAACTTCAGTTATAAGTTCAACTT
* * * * **
38923619 CAAGAGGAGTCAGTCCAACTCCAAGGGTAGTGAGTCCAACTCGGATGAGAACATCGAGCTTATCA
1 CAAGAGGAGTCAGTCCAACTCCAAGGGAAGTCAGTCCAACTCAGATGAGAACATCCAGCCCATCA
* * *
38923684 AGTCAATCTCATAGCTCAACTTCAGTTATAAGTTCAACTT
66 AGTCAATCCCAAAACTCAACTTCAGTTATAAGTTCAACTT
38923724 CAAGAGGAGTCAGTCCAACTC
1 CAAGAGGAGTCAGTCCAACTC
38923745 GGATGAGGGC
Statistics
Matches: 109, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
105 109 1.00
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.23
Consensus pattern (105 bp):
CAAGAGGAGTCAGTCCAACTCCAAGGGAAGTCAGTCCAACTCAGATGAGAACATCCAGCCCATCA
AGTCAATCCCAAAACTCAACTTCAGTTATAAGTTCAACTT
Found at i:38923802 original size:84 final size:84
Alignment explanation
Indices: 38923634--38923822 Score: 231
Period size: 84 Copynumber: 2.2 Consensus size: 84
38923624 GGAGTCAGTC
* * * * *
38923634 CAACTCCAAG-GGTAGTGAGTCCAACTCGGATGAGAACATCGAGCTTATCAAGTCAATCTCATAG
1 CAACTTCAAGAGG-AGTCAGTCCAACTCGGATGAGAACATCAACCTTATCAAGTCAATCCCATAG
*
38923698 CTCAACTTCAGTTATAAGTT
65 CTCAACTCCAGTTATAAGTT
**
38923718 CAACTTCAAGAGGAGTCAGTCCAACTCGGATGAGGGCATCAACCTTATCAAGTCAATCCCATAGC
1 CAACTTCAAGAGGAGTCAGTCCAACTCGGATGAGAACATCAACCTTATCAAGTCAATCCCATAGC
* *
38923783 TCAGCTCCAG-TAGTTAGTT
66 TCAACTCCAGTTA-TAAGTT
*
38923802 CAACTTTAAGA-GAGGTCAGTC
1 CAACTTCAAGAGGA-GTCAGTC
38923823 TTACTCCAAG
Statistics
Matches: 91, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
83 4 0.04
84 85 0.93
85 2 0.02
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (84 bp):
CAACTTCAAGAGGAGTCAGTCCAACTCGGATGAGAACATCAACCTTATCAAGTCAATCCCATAGC
TCAACTCCAGTTATAAGTT
Found at i:38923842 original size:105 final size:104
Alignment explanation
Indices: 38923718--38924245 Score: 514
Period size: 105 Copynumber: 5.1 Consensus size: 104
38923708 GTTATAAGTT
* * *
38923718 CAACTTCAAGAGG-AGTCAGTCCAACTCGGATGAGGGCATCAACCTTATCAAGTCAATCCCATAG
1 CAACTCCAAG-GGTAGTCAGTCCAACTCGGATGAGGACATCAACCTCATCAAGTCAATCCCATAG
* * ** *
38923782 CTCAGCTCCAGTAGTTAGTTCAACTTTAAGA-GAGGTCAGTC
65 CTCAACTTCAGTA-TTAGTTCAACTCCAAGAGGA-GTCAATC
** * * * ** *
38923823 TTACTCCAAGGGTAATCAGTCCAACTCGAATGAGGAAATCAACCTCATTGAGTCTATCCCATAGC
1 CAACTCCAAGGGTAGTCAGTCCAACTCGGATGAGGACATCAACCTCATCAAGTCAATCCCATAGC
38923888 TCAACTTCA--ATTAGTTCAACTCCAAGAGGAGTCAATC
66 TCAACTTCAGTATTAGTTCAACTCCAAGAGGAGTCAATC
* * *
38923925 CAACTCCAAGGGTAGTGAGTCCAACTCAGATAAGGACAT-ACACCTCATCAAGTCAATCCCATAG
1 CAACTCCAAGGGTAGTCAGTCCAACTCGGATGAGGACATCA-ACCTCATCAAGTCAATCCCATAG
* * *
38923989 TTCAACTTCAGTTATCAGTTCAACTCCAAGAGGAGTCATTC
65 CTCAACTTCAG-TATTAGTTCAACTCCAAGAGGAGTCAATC
* * *
38924030 CAACTCCAAGGGTAGTGAGTCCAACTGGGATGAGGACATCCACCTCATCAAGTCAATCCCATAGC
1 CAACTCCAAGGGTAGTCAGTCCAACTCGGATGAGGACATCAACCTCATCAAGTCAATCCCATAGC
* * * *
38924095 TCAACTTCAGT-TCACATTTCAACCCCAAGAGGAGTCAGTC
66 TCAACTTCAGTAT--TAGTTCAACTCCAAGAGGAGTCAATC
* * * * * * * * * * *
38924135 CAATTTCAAGGGTAGTCAGTCCAATTCGAATAAGAACATCCAGCAT-ATCGAGCCAATCCCAAAG
1 CAACTCCAAGGGTAGTCAGTCCAACTCGGATGAGGACAT-CAACCTCATCAAGTCAATCCCATAG
** * *
38924199 CTTGACTTCAGTTATTTGTTCAACTCCAA-AGGTAGTCAGTC
65 CTCAACTTCAG-TATTAGTTCAACTCCAAGAGG-AGTCAATC
38924240 CAACTC
1 CAACTC
38924246 GGATGGGAAC
Statistics
Matches: 350, Mismatches: 60, Indels: 26
0.80 0.14 0.06
Matches are distributed among these distances:
101 1 0.00
102 81 0.23
103 4 0.01
104 6 0.02
105 253 0.72
106 4 0.01
107 1 0.00
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (104 bp):
CAACTCCAAGGGTAGTCAGTCCAACTCGGATGAGGACATCAACCTCATCAAGTCAATCCCATAGC
TCAACTTCAGTATTAGTTCAACTCCAAGAGGAGTCAATC
Found at i:38923888 original size:189 final size:186
Alignment explanation
Indices: 38923532--38923930 Score: 455
Period size: 189 Copynumber: 2.1 Consensus size: 186
38923522 GTTAGTCTAC
* *
38923532 CTCCAAG-GGAAGTCAGTCCAACTCAGATTAGGACATCCATCCCATCAAGTCAATCCCAAAACTC
1 CTCCAAGAGG-AGTCAGTCCAACTCAGATGAGGACATCCAACCCATCAAGTCAATCCCAAAACTC
* * * *
38923596 AACTTCAGTTCTCAGTTCAACTTCAAGAGGAGTCAGTCCAACTCCAAGGGTAGTGAGTCCAACTC
65 AACTCCAGTACTCAGTTCAACTTCAAGAGGAGTCAGTCCAACTCCAAGGGTAATCAGTCCAACTC
* * * * *
38923661 GGATGAGAACATCGAGCTTATCAAGTCAATCTCATAGCTCAACTTCAGTTATAAGTTCAA
130 GAATGAGAACATCAACCTCATCAAGTCAATCCCATAGCTCAACTTCA---ATAAGTTCAA
* * * * * *
38923721 CTTCAAGAGGAGTCAGTCCAACTCGGATGAGGGCAT-CAACCTTATCAAGTCAATCCCATAGCTC
1 CTCCAAGAGGAGTCAGTCCAACTCAGATGAGGACATCCAACC-CATCAAGTCAATCCCAAAACTC
* * * * **
38923785 AGCTCCAGTAGTTAGTTCAACTTTAAGA-GAGGTCAGTCTTACTCCAAGGGTAATCAGTCCAACT
65 AACTCCAGTACTCAGTTCAACTTCAAGAGGA-GTCAGTCCAACTCCAAGGGTAATCAGTCCAACT
** * *
38923849 CGAATGAGGAA-ATCAACCTCATTGAGTCTATCCCATAGCTCAACTTCAATTAGTTCAA
129 CGAATGA-GAACATCAACCTCATCAAGTCAATCCCATAGCTCAACTTCAATAAGTTCAA
*
38923907 CTCCAAGAGGAGTCAATCCAACTC
1 CTCCAAGAGGAGTCAGTCCAACTC
38923931 CAAGGGTAGT
Statistics
Matches: 177, Mismatches: 29, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
186 31 0.18
188 6 0.03
189 135 0.76
190 5 0.03
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (186 bp):
CTCCAAGAGGAGTCAGTCCAACTCAGATGAGGACATCCAACCCATCAAGTCAATCCCAAAACTCA
ACTCCAGTACTCAGTTCAACTTCAAGAGGAGTCAGTCCAACTCCAAGGGTAATCAGTCCAACTCG
AATGAGAACATCAACCTCATCAAGTCAATCCCATAGCTCAACTTCAATAAGTTCAA
Found at i:38923930 original size:21 final size:21
Alignment explanation
Indices: 38923904--38923951 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
38923894 TCAATTAGTT
38923904 CAACTCCAAGAGG-AGTCAATC
1 CAACTCCAAG-GGTAGTCAATC
* *
38923925 CAACTCCAAGGGTAGTGAGTC
1 CAACTCCAAGGGTAGTCAATC
38923946 CAACTC
1 CAACTC
38923952 AGATAAGGAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 2 0.08
21 22 0.92
ACGTcount: A:0.33, C:0.29, G:0.21, T:0.17
Consensus pattern (21 bp):
CAACTCCAAGGGTAGTCAATC
Found at i:38924052 original size:21 final size:21
Alignment explanation
Indices: 38924003--38924055 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
38923993 ACTTCAGTTA
*
38924003 TCAGTTCAACTCCAAGAGGAG
1 TCAGTCCAACTCCAAGAGGAG
*
38924024 TCATTCCAACTCCAAG-GGTAG
1 TCAGTCCAACTCCAAGAGG-AG
*
38924045 TGAGTCCAACT
1 TCAGTCCAACT
38924056 GGGATGAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 2 0.07
21 25 0.93
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (21 bp):
TCAGTCCAACTCCAAGAGGAG
Found at i:38924282 original size:189 final size:189
Alignment explanation
Indices: 38924030--38924785 Score: 600
Period size: 189 Copynumber: 4.0 Consensus size: 189
38924020 GGAGTCATTC
* * *
38924030 CAACTCCAAGGGTAGTGAGTCCAACTGGGATGAGGACATCCACCTCATCAAGTCAATCCCATAGC
1 CAACTCCAAAGGTAGTCAGTCCAACTCGGATGAGGACATCCACCTCATCAAGTCAATCCCATAGC
* * *
38924095 TCAACTTCAGTTCA-CATTTCAACCCCAAGAGGAG-TCAGTCCAATTTCAAGGGTAGTCAGTCCA
66 TCAACTTCAGTT-ATCAGTTCAACCCCAAGAGG-GTTCAGTCCAACTCCAAGGGTAGTCAGTCCA
* ** **
38924158 ATTCGAATAAGAACATCCAGCAT-ATCGAGCCAATCCCAAAGCTTGACTTCAGTTATTTGTT
129 ACTCGAATAAGAACATCCA-CATCATCGAGCCAATCCCAAAGCTCCACTTCAGTTATCAGTT
*
38924219 CAACTCCAAAGGTAGTCAGTCCAACTCGGATG-GGAACATCCACCTCATCGAGTCAATCCCATAG
1 CAACTCCAAAGGTAGTCAGTCCAACTCGGATGAGG-ACATCCACCTCATCAAGTCAATCCCATAG
* *
38924283 CTCAACTTCAGTTATCAGTTCAACTCCAAGAGGGTTCAGTCCAACTCCAAGGGTAGTTAGTCCAA
65 CTCAACTTCAGTTATCAGTTCAACCCCAAGAGGGTTCAGTCCAACTCCAAGGGTAGTCAGTCCAA
* * * * * *
38924348 CTCGGATGAGGACATCCACCTCATCGAGTCAATCCCATAGCTCCACTTCAGTTATCAGTT
130 CTCGAATAAGAACATCCACATCATCGAGCCAATCCCAAAGCTCCACTTCAGTTATCAGTT
* * * * * * * *
38924408 CAACTCCAAGAGG-AGCCAGTCCAACTCCAAGGGT-AGTTA-GTCCAACTCAGATGAGGAC-AT-
1 CAACTCCAA-AGGTAGTCAGTCCAACT-C--GGATGAG-GACATCCACCTC--ATCAAGTCAATC
* * * * * ** *
38924468 CCAT--CTCATCGAGTCAATCCCAT-AGCTCAACTTC---A--GTTACAAGTCCAACTCCAATGG
59 CCATAGCTCAAC--TTCAGT--TATCAGTTCAACCCCAAGAGGGTT-C-AGTCCAACTCCAAGGG
* * * * * * * * *
38924525 TAG-CTAGTCCAACTC-AGATGAGGACGTCCACCTCATCGAGTCAATCTCATAGCTCAACTTCTG
118 TAGTC-AGTCCAACTCGA-ATAAGAACATCCACATCATCGAGCCAATCCCAAAGCTCCACTTCAG
* *
38924588 TTACCAGTC
181 TTATCAGTT
* * * * *
38924597 CAACTCCAATGGTAG-CTAGTCCAACTCAGATAAGGACGTCCACCTCATCAAATCAATCCCATAG
1 CAACTCCAAAGGTAGTC-AGTCCAACTCGGATGAGGACATCCACCTCATCAAGTCAATCCCATAG
* * *
38924661 CTCAACCTCAGTTATCAGTTCAACTCCAAGAGGAG-TCAGTCCAACTCCAAGGGTAGTTAGTCCA
65 CTCAACTTCAGTTATCAGTTCAACCCCAAGAGG-GTTCAGTCCAACTCCAAGGGTAGTCAGTCCA
* * * * * * * * *
38924725 ACTCGGATGAGGACATCCACCTCATCGAGTCAATCCCATAGCTCAACTCCAGATATCAGTT
129 ACTCGAATAAGAACATCCACATCATCGAGCCAATCCCAAAGCTCCACTTCAGTTATCAGTT
38924786 TTATCACTGA
Statistics
Matches: 461, Mismatches: 69, Indels: 74
0.76 0.11 0.12
Matches are distributed among these distances:
185 6 0.01
186 14 0.03
187 21 0.05
188 11 0.02
189 365 0.79
190 5 0.01
191 16 0.03
192 17 0.04
193 6 0.01
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.23
Consensus pattern (189 bp):
CAACTCCAAAGGTAGTCAGTCCAACTCGGATGAGGACATCCACCTCATCAAGTCAATCCCATAGC
TCAACTTCAGTTATCAGTTCAACCCCAAGAGGGTTCAGTCCAACTCCAAGGGTAGTCAGTCCAAC
TCGAATAAGAACATCCACATCATCGAGCCAATCCCAAAGCTCCACTTCAGTTATCAGTT
Found at i:38924290 original size:294 final size:293
Alignment explanation
Indices: 38923923--38924772 Score: 998
Period size: 294 Copynumber: 3.0 Consensus size: 293
38923913 GAGGAGTCAA
* * * * *
38923923 TCCAACTCCAAGGGTAGTGAGTCCAACTCAGATAAGGACATACACCTCATCAAGTCAATCCCATA
1 TCCAACTCCAAAGGTAGTCAGTCCAACTCAGAT-GGGACATCCACCTCATCGAGTCAATCCCATA
* *
38923988 GTTCAACTTCAGTTATCAGTTCAACTCCAAGAGGAG-TCATTCCAACTCCAAGGGTAGTGAGTCC
65 GCTCAACTTCAGTTATCAGTTCAACTCCAAGAGG-GTTCAGTCCAACTCCAAGGGTAGTGAGTCC
* *
38924052 AACTGGGATGAGGACATCCACCTCATCAAGTCAATCCCATAGCTCAACTTCAGTTCA-CATTTCA
129 AACTCGGATGAGGACATCCACCTCATCAAGTCAATCCCATAGCTCAACTTCAGTT-ATCAGTTCA
* * * *
38924116 ACCCCAAGAGGAGTCAGTCCAATTTCAAGGGTAGTCAGTCCAATTC-GAATAAGAACATCCAGCA
193 ACCCCAAGAGGAGCCAGTCCAACTCCAAGGGTAGTCAGTCCAACTCAG-ATAAGAACATCCAGC-
** ***
38924180 T-ATCGAGCCAATCCCAAAGCTTGACTTCAGTTATTTG
256 TCATCGAGCCAATCCCAAAGCTCAACTTCAGTTACAAG
* *
38924217 TTCAACTCCAAAGGTAGTCAGTCCAACTCGGATGGGAACATCCACCTCATCGAGTCAATCCCATA
1 TCCAACTCCAAAGGTAGTCAGTCCAACTCAGATGGG-ACATCCACCTCATCGAGTCAATCCCATA
*
38924282 GCTCAACTTCAGTTATCAGTTCAACTCCAAGAGGGTTCAGTCCAACTCCAAGGGTAGTTAGTCCA
65 GCTCAACTTCAGTTATCAGTTCAACTCCAAGAGGGTTCAGTCCAACTCCAAGGGTAGTGAGTCCA
* *
38924347 ACTCGGATGAGGACATCCACCTCATCGAGTCAATCCCATAGCTCCACTTCAGTTATCAGTTCAAC
130 ACTCGGATGAGGACATCCACCTCATCAAGTCAATCCCATAGCTCAACTTCAGTTATCAGTTCAAC
* * * * *
38924412 TCCAAGAGGAGCCAGTCCAACTCCAAGGGTAGTTAGTCCAACTCAGATGAGGACATCCATCTCAT
195 CCCAAGAGGAGCCAGTCCAACTCCAAGGGTAGTCAGTCCAACTCAGATAAGAACATCCAGCTCAT
* *
38924477 CGAGTCAATCCCATAGCTCAACTTCAGTTACAAG
260 CGAGCCAATCCCAAAGCTCAACTTCAGTTACAAG
* * *
38924511 TCCAACTCCAATGGTAG-CTAGTCCAACTCAGATGAGGACGTCCACCTCATCGAGTCAATCTCAT
1 TCCAACTCCAAAGGTAGTC-AGTCCAACTCAGATG-GGACATCCACCTCATCGAGTCAATCCCAT
*
38924575 AGCTCAACTTC-----T--GTT--A---C---------CAGTCCAACTCCAATGGTAGCT-AGTC
64 AGCTCAACTTCAGTTATCAGTTCAACTCCAAGAGGGTTCAGTCCAACTCCAAGGGTAG-TGAGTC
* * * * *
38924618 CAACTCAGATAAGGACGTCCACCTCATCAAATCAATCCCATAGCTCAACCTCAGTTATCAGTTCA
128 CAACTCGGATGAGGACATCCACCTCATCAAGTCAATCCCATAGCTCAACTTCAGTTATCAGTTCA
* * * * * * *
38924683 ACTCCAAGAGGAGTCAGTCCAACTCCAAGGGTAGTTAGTCCAACTCGGATGAGGACATCCACCTC
193 ACCCCAAGAGGAGCCAGTCCAACTCCAAGGGTAGTCAGTCCAACTCAGATAAGAACATCCAGCTC
* *
38924748 ATCGAGTCAATCCCATAGCTCAACT
258 ATCGAGCCAATCCCAAAGCTCAACT
38924773 CCAGATATCA
Statistics
Matches: 502, Mismatches: 46, Indels: 37
0.86 0.08 0.06
Matches are distributed among these distances:
273 168 0.33
274 1 0.00
282 1 0.00
285 1 0.00
287 3 0.01
289 1 0.00
293 6 0.01
294 318 0.63
295 3 0.01
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.23
Consensus pattern (293 bp):
TCCAACTCCAAAGGTAGTCAGTCCAACTCAGATGGGACATCCACCTCATCGAGTCAATCCCATAG
CTCAACTTCAGTTATCAGTTCAACTCCAAGAGGGTTCAGTCCAACTCCAAGGGTAGTGAGTCCAA
CTCGGATGAGGACATCCACCTCATCAAGTCAATCCCATAGCTCAACTTCAGTTATCAGTTCAACC
CCAAGAGGAGCCAGTCCAACTCCAAGGGTAGTCAGTCCAACTCAGATAAGAACATCCAGCTCATC
GAGCCAATCCCAAAGCTCAACTTCAGTTACAAG
Found at i:38924291 original size:84 final size:85
Alignment explanation
Indices: 38924141--38924329 Score: 226
Period size: 84 Copynumber: 2.3 Consensus size: 85
38924131 AGTCCAATTT
* **
38924141 CAAG-GGTAGTCAGTCCAATTCGAATAAGAACATCCAGCATATCGAGCCAATCCCAAAGCTTGAC
1 CAAGAGGTAGTCAGTCCAACTCGAATAAGAACATCCAGCATATCGAGCCAATCCCAAAGCTCAAC
**
38924205 TTCAGTTATTTGTTCAACTC
66 TTCAGTTATCAGTTCAACTC
* ** * * *
38924225 CAA-AGGTAGTCAGTCCAACTCGGATGGGAACATCCA-CCTCATCGAGTCAATCCCATAGCTCAA
1 CAAGAGGTAGTCAGTCCAACTCGAATAAGAACATCCAGCAT-ATCGAGCCAATCCCAAAGCTCAA
38924288 CTTCAGTTATCAGTTCAACTC
65 CTTCAGTTATCAGTTCAACTC
38924309 CAAGAGG--GTTCAGTCCAACTC
1 CAAGAGGTAG-TCAGTCCAACTC
38924330 CAAGGGTAGT
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
83 3 0.03
84 84 0.93
85 3 0.03
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (85 bp):
CAAGAGGTAGTCAGTCCAACTCGAATAAGAACATCCAGCATATCGAGCCAATCCCAAAGCTCAAC
TTCAGTTATCAGTTCAACTC
Found at i:38924327 original size:21 final size:21
Alignment explanation
Indices: 38924297--38924350 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
38924287 ACTTCAGTTA
*
38924297 TCAGTTCAACTCCAAGAGG-GT
1 TCAGTCCAACTCCAAG-GGAGT
38924318 TCAGTCCAACTCCAAGGGTAGT
1 TCAGTCCAACTCCAAGGG-AGT
38924340 T-AGTCCAACTC
1 TCAGTCCAACTC
38924351 GGATGAGGAC
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
20 2 0.07
21 25 0.83
22 3 0.10
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (21 bp):
TCAGTCCAACTCCAAGGGAGT
Found at i:38924345 original size:105 final size:105
Alignment explanation
Indices: 38924219--38924539 Score: 497
Period size: 105 Copynumber: 3.1 Consensus size: 105
38924209 GTTATTTGTT
* *
38924219 CAACTCCAAAGGTAGTCAGTCCAACTCGGATG-GGAACATCCACCTCATCGAGTCAATCCCATAG
1 CAACTCCAAGGGTAGTTAGTCCAACTCGGATGAGG-ACATCCACCTCATCGAGTCAATCCCATAG
*
38924283 CTCAACTTCAGTTATCAGTTCAACTCCAAGAGG-GTTCAGTC
65 CTCAACTTCAGTTATCAGTTCAACTCCAAGAGGAG-CCAGTC
38924324 CAACTCCAAGGGTAGTTAGTCCAACTCGGATGAGGACATCCACCTCATCGAGTCAATCCCATAGC
1 CAACTCCAAGGGTAGTTAGTCCAACTCGGATGAGGACATCCACCTCATCGAGTCAATCCCATAGC
*
38924389 TCCACTTCAGTTATCAGTTCAACTCCAAGAGGAGCCAGTC
66 TCAACTTCAGTTATCAGTTCAACTCCAAGAGGAGCCAGTC
* *
38924429 CAACTCCAAGGGTAGTTAGTCCAACTCAGATGAGGACATCCATCTCATCGAGTCAATCCCATAGC
1 CAACTCCAAGGGTAGTTAGTCCAACTCGGATGAGGACATCCACCTCATCGAGTCAATCCCATAGC
* * *
38924494 TCAACTTCAGTTA-CAAGTCCAACTCCAATG-GTAGCTAGTC
66 TCAACTTCAGTTATC-AGTTCAACTCCAA-GAGGAGCCAGTC
38924534 CAACTC
1 CAACTC
38924540 AGATGAGGAC
Statistics
Matches: 202, Mismatches: 10, Indels: 8
0.92 0.05 0.04
Matches are distributed among these distances:
104 1 0.00
105 197 0.98
106 4 0.02
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.23
Consensus pattern (105 bp):
CAACTCCAAGGGTAGTTAGTCCAACTCGGATGAGGACATCCACCTCATCGAGTCAATCCCATAGC
TCAACTTCAGTTATCAGTTCAACTCCAAGAGGAGCCAGTC
Found at i:38924432 original size:21 final size:21
Alignment explanation
Indices: 38924403--38924455 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
38924393 CTTCAGTTAT
*
38924403 CAGTTCAACTCCAAGAGG-AGC
1 CAGTCCAACTCCAAG-GGTAGC
*
38924424 CAGTCCAACTCCAAGGGTAGT
1 CAGTCCAACTCCAAGGGTAGC
*
38924445 TAGTCCAACTC
1 CAGTCCAACTC
38924456 AGATGAGGAC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 2 0.07
21 26 0.93
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.19
Consensus pattern (21 bp):
CAGTCCAACTCCAAGGGTAGC
Found at i:38924566 original size:84 final size:83
Alignment explanation
Indices: 38924424--38924689 Score: 406
Period size: 84 Copynumber: 3.2 Consensus size: 83
38924414 CAAGAGGAGC
* * * *
38924424 CAGTCCAACTCCAAGGGTAGTTAGTCCAACTCAGATGAGGACATCCATCTCATCGAGTCAATCCC
1 CAGTCCAACTCCAATGGTAGCTAGTCCAACTCAGATGAGGACGTCCACCTCATCGAGTCAATCCC
38924489 ATAGCTCAACTTCAGTTA
66 ATAGCTCAACTTCAGTTA
*
38924507 CAAGTCCAACTCCAATGGTAGCTAGTCCAACTCAGATGAGGACGTCCACCTCATCGAGTCAATCT
1 C-AGTCCAACTCCAATGGTAGCTAGTCCAACTCAGATGAGGACGTCCACCTCATCGAGTCAATCC
*
38924572 CATAGCTCAACTTCTGTTA
65 CATAGCTCAACTTCAGTTA
* * *
38924591 CCAGTCCAACTCCAATGGTAGCTAGTCCAACTCAGATAAGGACGTCCACCTCATCAAATCAATCC
1 -CAGTCCAACTCCAATGGTAGCTAGTCCAACTCAGATGAGGACGTCCACCTCATCGAGTCAATCC
*
38924656 CATAGCTCAACCTCAGTTA
65 CATAGCTCAACTTCAGTTA
*
38924675 TCAGTTCAACTCCAA
1 -CAGTCCAACTCCAA
38924690 GAGGAGTCAG
Statistics
Matches: 167, Mismatches: 14, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
83 1 0.01
84 165 0.99
85 1 0.01
ACGTcount: A:0.30, C:0.31, G:0.15, T:0.24
Consensus pattern (83 bp):
CAGTCCAACTCCAATGGTAGCTAGTCCAACTCAGATGAGGACGTCCACCTCATCGAGTCAATCCC
ATAGCTCAACTTCAGTTA
Found at i:38924700 original size:21 final size:21
Alignment explanation
Indices: 38924675--38924728 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
38924665 ACCTCAGTTA
*
38924675 TCAGTTCAACTCCAAGAGG-AG
1 TCAGTCCAACTCCAAG-GGTAG
38924696 TCAGTCCAACTCCAAGGGTAG
1 TCAGTCCAACTCCAAGGGTAG
*
38924717 TTAGTCCAACTC
1 TCAGTCCAACTC
38924729 GGATGAGGAC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 2 0.07
21 28 0.93
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (21 bp):
TCAGTCCAACTCCAAGGGTAG
Found at i:38924706 original size:105 final size:105
Alignment explanation
Indices: 38924592--38924785 Score: 300
Period size: 105 Copynumber: 1.8 Consensus size: 105
38924582 CTTCTGTTAC
* *
38924592 CAGTCCAACTCCAATGGTAGCTAGTCCAACTCAGATAAGGACGTCCACCTCATCAAATCAATCCC
1 CAGTCCAACTCCAAGGGTAGCTAGTCCAACTCAGATAAGGACATCCACCTCATCAAATCAATCCC
*
38924657 ATAGCTCAAC-CTCAGTTATCAGTTCAACTCCAAGAGGAGT
66 ATAGCTCAACTC-CAGATATCAGTTCAACTCCAAGAGGAGT
* * * * *
38924697 CAGTCCAACTCCAAGGGTAGTTAGTCCAACTCGGATGAGGACATCCACCTCATCGAGTCAATCCC
1 CAGTCCAACTCCAAGGGTAGCTAGTCCAACTCAGATAAGGACATCCACCTCATCAAATCAATCCC
38924762 ATAGCTCAACTCCAGATATCAGTT
66 ATAGCTCAACTCCAGATATCAGTT
38924786 TTATCACTGA
Statistics
Matches: 80, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
105 79 0.99
106 1 0.01
ACGTcount: A:0.31, C:0.30, G:0.16, T:0.22
Consensus pattern (105 bp):
CAGTCCAACTCCAAGGGTAGCTAGTCCAACTCAGATAAGGACATCCACCTCATCAAATCAATCCC
ATAGCTCAACTCCAGATATCAGTTCAACTCCAAGAGGAGT
Found at i:38932366 original size:19 final size:20
Alignment explanation
Indices: 38932344--38932383 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
38932334 AAATAAATTA
*
38932344 AAGAAATGAATTAAA-AAGG
1 AAGAAATGAATAAAATAAGG
*
38932363 AAGAGATGAATAAAATAAGG
1 AAGAAATGAATAAAATAAGG
38932383 A
1 A
38932384 GGGAAGAGGG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.62, C:0.00, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGAAATGAATAAAATAAGG
Found at i:38933857 original size:27 final size:28
Alignment explanation
Indices: 38933773--38933870 Score: 119
Period size: 27 Copynumber: 3.5 Consensus size: 28
38933763 CATGAGATTG
* * *
38933773 GCACTAAGTGTGCGGGTTTAAATTGT-TCA
1 GCACTAAGTGTGCGAGTTT-GATTATAT-A
38933802 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
38933830 GCACTAAGTGTGCGAG-TTGATTTTATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
38933857 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
38933871 GACTTAATAT
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
27 23 0.37
28 21 0.33
29 19 0.30
ACGTcount: A:0.24, C:0.13, G:0.29, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:38933883 original size:27 final size:27
Alignment explanation
Indices: 38933801--38933883 Score: 87
Period size: 27 Copynumber: 3.0 Consensus size: 27
38933791 TAAATTGTTC
* *
38933801 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* * *
38933829 AGCACTAAGTGTGCGAGTTGATTTTAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
38933856 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
38933883 A
1 A
38933884 TTTTTGAATC
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
27 28 0.58
28 20 0.42
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:38939535 original size:67 final size:67
Alignment explanation
Indices: 38939376--38939528 Score: 270
Period size: 67 Copynumber: 2.3 Consensus size: 67
38939366 CTAACCAGTT
* * *
38939376 TATCTCGTAGCTCTTTTGTCTACATGGTGTCCTTCACCTGGAACCACGCATGCGACCTAGCTATA
1 TATCCCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACGCATGCGACCTAGCTACA
38939441 TA
66 TA
*
38939443 TATCCCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAACCACGCATGCGACCTAGCTACA
1 TATCCCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACGCATGCGACCTAGCTACA
38939508 TA
66 TA
38939510 TATCCCGTAGCTCTCTTGT
1 TATCCCGTAGCTCTCTTGT
38939529 ACACATGATG
Statistics
Matches: 82, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
67 82 1.00
ACGTcount: A:0.20, C:0.30, G:0.18, T:0.33
Consensus pattern (67 bp):
TATCCCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACGCATGCGACCTAGCTACA
TA
Found at i:38940568 original size:21 final size:21
Alignment explanation
Indices: 38940544--38940583 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
38940534 TATATTTTAT
38940544 AGCATA-AGTAATAAAATAAAG
1 AGCATAGA-TAATAAAATAAAG
*
38940565 AGCATGGATAATAAAATAA
1 AGCATAGATAATAAAATAA
38940584 TAGTGGTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 16 0.94
22 1 0.06
ACGTcount: A:0.60, C:0.05, G:0.15, T:0.20
Consensus pattern (21 bp):
AGCATAGATAATAAAATAAAG
Found at i:38942530 original size:39 final size:40
Alignment explanation
Indices: 38942460--38942640 Score: 260
Period size: 40 Copynumber: 4.6 Consensus size: 40
38942450 TATTCGAATG
* *
38942460 ATATCCGGGTTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
38942500 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
38942539 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
38942579 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
38942619 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
38942641 TACTTGGGTT
Statistics
Matches: 129, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 53 0.41
40 74 0.57
41 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:38942591 original size:79 final size:80
Alignment explanation
Indices: 38942460--38942640 Score: 260
Period size: 79 Copynumber: 2.3 Consensus size: 80
38942450 TATTCGAATG
* * *
38942460 ATATCCGGGTTAAGTCCCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAG-TCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
38942524 TTTGTGCTAG-TGATT
66 TTTGTGCGAGTTG-CT
* *
38942539 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
38942604 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGCT
*
38942619 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
38942641 TACTTGGGTT
Statistics
Matches: 92, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
79 65 0.71
80 25 0.27
81 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGCT
Found at i:38948016 original size:29 final size:30
Alignment explanation
Indices: 38947981--38948054 Score: 91
Period size: 29 Copynumber: 2.5 Consensus size: 30
38947971 GTTGTGAGAT
*
38947981 TGGCACTAAGTGTGCGG-GCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGGAG-TTGAAAGTACA
*
38948010 TGGCACTAAGTGTG-GGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGGAGTTGAAAGTACA
*
38948039 TGGCACTACGTGTGCG
1 TGGCACTAAGTGTGCG
38948055 TGGTTGATTA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
28 7 0.18
29 31 0.79
30 1 0.03
ACGTcount: A:0.24, C:0.16, G:0.34, T:0.26
Consensus pattern (30 bp):
TGGCACTAAGTGTGCGGAGTTGAAAGTACA
Done.