Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 129 of 255
Found at i:41323280 original size:66 final size:66
Alignment explanation
Indices: 41323170--41323313 Score: 175
Period size: 66 Copynumber: 2.2 Consensus size: 66
41323160 TCTTCATCAT
* * * * ** *
41323170 ACTTTAAAGCTGTAGCTGGAGTTCTTCATATTTTCTTGTTGCCTCTGCTT-TCCTCGTTGCTGCC
1 ACTTT-AAGTTGTAGCTGGAGTTCATCATATTTGCTTGTAGCCTCTGCTTCT-CTCAATGATGCC
41323234 TTC
64 TTC
41323237 ACTTTAAGTTGTAGCTGGAGTTCATCATATTTGCTT-TGAGCCTCTGCTTCTCTCAATGATGCCT
1 ACTTTAAGTTGTAGCTGGAGTTCATCATATTTGCTTGT-AGCCTCTGCTTCTCTCAATGATGCCT
41323301 TC
65 TC
*
41323303 GCTTTAAGTTG
1 ACTTTAAGTTG
41323314 AGTAATTTGT
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
65 1 0.01
66 60 0.90
67 6 0.09
ACGTcount: A:0.15, C:0.23, G:0.19, T:0.43
Consensus pattern (66 bp):
ACTTTAAGTTGTAGCTGGAGTTCATCATATTTGCTTGTAGCCTCTGCTTCTCTCAATGATGCCTT
C
Found at i:41329308 original size:25 final size:26
Alignment explanation
Indices: 41329259--41329312 Score: 76
Period size: 25 Copynumber: 2.1 Consensus size: 26
41329249 TTTTAAATAT
41329259 ATAGATAAATAATATTTATCTTTATG
1 ATAGATAAATAATATTTATCTTTATG
*
41329285 ATAGTTAAAT-ATATTTAT-TCTTATG
1 ATAGATAAATAATATTTATCT-TTATG
41329310 ATA
1 ATA
41329313 ATATTTATGA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 1 0.04
25 16 0.62
26 9 0.35
ACGTcount: A:0.41, C:0.04, G:0.07, T:0.48
Consensus pattern (26 bp):
ATAGATAAATAATATTTATCTTTATG
Found at i:41329643 original size:19 final size:20
Alignment explanation
Indices: 41329619--41329656 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
41329609 TATCTTAAAT
41329619 TTTAAAAT-AAAAATAAAAA
1 TTTAAAATCAAAAATAAAAA
*
41329638 TTTAAAATCAAAACTAAAA
1 TTTAAAATCAAAAATAAAA
41329657 TAAATAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.26
Consensus pattern (20 bp):
TTTAAAATCAAAAATAAAAA
Found at i:41329657 original size:19 final size:18
Alignment explanation
Indices: 41329614--41329657 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
41329604 CAAGTTATCT
*
41329614 TAAATTTTAAAATAAAAA
1 TAAAATTTAAAATAAAAA
*
41329632 TAAAAATTTAAAATCAAAAC
1 T-AAAATTTAAAAT-AAAAA
41329652 TAAAAT
1 TAAAAT
41329658 AAATAATAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 1 0.05
19 16 0.73
20 5 0.23
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.30
Consensus pattern (18 bp):
TAAAATTTAAAATAAAAA
Found at i:41332090 original size:64 final size:64
Alignment explanation
Indices: 41332009--41332192 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
41331999 AGACATTATG
* * *
41332009 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
41332073 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTATGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
41332138 AA
63 AA
* * *
41332140 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
41332193 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.26
66 21 0.21
67 30 0.31
68 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:41336260 original size:41 final size:41
Alignment explanation
Indices: 41336199--41336294 Score: 142
Period size: 41 Copynumber: 2.4 Consensus size: 41
41336189 AATAAATTCA
* *
41336199 CGGCATTTAT-GGAAAAACGTCGTTA-TAGCCTTACCTTTTG
1 CGGCGTTTATGGGAAAAACGTCGTTACT-GCCTTACCTTATG
*
41336239 CGGTGTTTATGGGAAAAACGTCGTTACTGCCTTACCTTATG
1 CGGCGTTTATGGGAAAAACGTCGTTACTGCCTTACCTTATG
41336280 CGGCGTTTATGGGAA
1 CGGCGTTTATGGGAA
41336295 CTTTGCTACC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
40 8 0.16
41 41 0.82
42 1 0.02
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.33
Consensus pattern (41 bp):
CGGCGTTTATGGGAAAAACGTCGTTACTGCCTTACCTTATG
Found at i:41338428 original size:42 final size:42
Alignment explanation
Indices: 41338381--41338533 Score: 137
Period size: 42 Copynumber: 3.6 Consensus size: 42
41338371 AGGGTTATGT
* * * *
41338381 GTGATTTCGTGTAGGACCATATTTGGGATATGGCATCGAAAC
1 GTGATTTCATGTAAGACCATATCTGGGACATGGCATCGAAAC
* * *
41338423 GTGATTTCATGTAAGACCATGTCTGGGACATGGCATCGATAT
1 GTGATTTCATGTAAGACCATATCTGGGACATGGCATCGAAAC
* ** * *
41338465 GGGACATCATGTAAGACCATAGCTGGG-CTATCGGCATCGATATAT
1 GTGATTTCATGTAAGACCATATCTGGGAC-AT-GGCATCGA-A-AC
**
41338510 GTGATCACATGTAAGACCATATCT
1 GTGATTTCATGTAAGACCATATCT
41338534 ATGATATGGC
Statistics
Matches: 89, Mismatches: 18, Indels: 5
0.79 0.16 0.04
Matches are distributed among these distances:
41 1 0.01
42 59 0.66
43 8 0.09
45 21 0.24
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (42 bp):
GTGATTTCATGTAAGACCATATCTGGGACATGGCATCGAAAC
Found at i:41344497 original size:19 final size:17
Alignment explanation
Indices: 41344462--41344500 Score: 51
Period size: 19 Copynumber: 2.2 Consensus size: 17
41344452 TGACAAATAA
*
41344462 TATATTAATATATTTTT
1 TATATTAATATAATTTT
41344479 TATATTATATATTAATTTT
1 TATATTA-ATA-TAATTTT
41344498 TAT
1 TAT
41344501 TAAACTTGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 7 0.37
18 3 0.16
19 9 0.47
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
TATATTAATATAATTTT
Found at i:41346444 original size:18 final size:19
Alignment explanation
Indices: 41346421--41346458 Score: 53
Period size: 17 Copynumber: 2.1 Consensus size: 19
41346411 ATAATGGTTA
41346421 AAATAAATTAA-AT-AAAAG
1 AAAT-AATTAATATGAAAAG
41346439 AAATAATTAATATGAAAAG
1 AAATAATTAATATGAAAAG
41346458 A
1 A
41346459 TGAATAAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.33
18 6 0.33
19 6 0.33
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (19 bp):
AAATAATTAATATGAAAAG
Found at i:41347750 original size:24 final size:23
Alignment explanation
Indices: 41347723--41347829 Score: 99
Period size: 24 Copynumber: 4.5 Consensus size: 23
41347713 GTACTAGATA
41347723 TGCGGATTTGAGTGGCACTATGTG
1 TGCGGATTTGA-TGGCACTATGTG
* *
41347747 TGCGTATTTGTATGGCAGTATGTG
1 TGCGGATTTG-ATGGCACTATGTG
* *
41347771 TGCGTATATGTATGGCACTATGTG
1 TGCGGATTTG-ATGGCACTATGTG
* *
41347795 TGTGGAATTAT-TTGGCACTATGTG
1 TGCGG-ATT-TGATGGCACTATGTG
*
41347819 TGCGGAGTTGA
1 TGCGGATTTGA
41347830 ATCGTAGATT
Statistics
Matches: 68, Mismatches: 11, Indels: 9
0.77 0.12 0.10
Matches are distributed among these distances:
22 1 0.01
23 2 0.03
24 61 0.90
25 3 0.04
26 1 0.01
ACGTcount: A:0.19, C:0.10, G:0.34, T:0.37
Consensus pattern (23 bp):
TGCGGATTTGATGGCACTATGTG
Found at i:41349027 original size:43 final size:44
Alignment explanation
Indices: 41348908--41349064 Score: 135
Period size: 43 Copynumber: 3.6 Consensus size: 44
41348898 AGCTCGTACA
* *
41348908 ATGCCAACGTCCCAGACGTGGTCTTACATGT-AATCAAATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAATCAAATATCG
* * * *
41348951 ATACC-ACTATCCTAGACAGGGTCTTACAC-TAAATCAAATA-CG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGTAAATCAAATATCG
* * * *
41348993 ATGCCAACGTCCCAGACTTTGTCTTACACGTAAATCATAA-GTCA
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAATCA-AATATCG
* * **
41349037 ATGCCAACATCCAAGATGTGGTCTTACA
1 ATGCCAACGTCCCAGACATGGTCTTACA
41349065 TGATAACACA
Statistics
Matches: 89, Mismatches: 19, Indels: 11
0.75 0.16 0.09
Matches are distributed among these distances:
42 25 0.28
43 38 0.43
44 26 0.29
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.25
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAAATCAAATATCG
Found at i:41357020 original size:15 final size:16
Alignment explanation
Indices: 41357000--41357034 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
41356990 ATATAAATTT
41357000 AAATTTA-ACTCATTC
1 AAATTTACACTCATTC
*
41357015 AAATTTACATTCATTC
1 AAATTTACACTCATTC
41357031 AAAT
1 AAAT
41357035 CAATCCAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 7 0.39
16 11 0.61
ACGTcount: A:0.43, C:0.17, G:0.00, T:0.40
Consensus pattern (16 bp):
AAATTTACACTCATTC
Found at i:41365304 original size:48 final size:48
Alignment explanation
Indices: 41365246--41365832 Score: 843
Period size: 48 Copynumber: 12.0 Consensus size: 48
41365236 TTGATGCATA
41365246 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* *
41365294 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG--A-A-ATATGTATG
* * * *
41365346 AGATATGTATATGTAGTAAAGCTGAATGGTTAATGTGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATG
*
41365396 AGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
*
41365444 AGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
*
41365492 AGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* *
41365540 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG--A-A-ATATGTATG
* * *
41365592 AGATATGTATATGTGGTAAAGCTGAATGGTTAATGTGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATG
* *
41365642 AGATATCTATATGTGGTAAAGCTGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* *
41365690 AGATATGCATATGTGGTAAAGCCGAATGG-TCAATGTGAAAATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AAATATGTATG
* *
41365739 AGATATGTATCTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* *
41365787 AGATATGTATATGTGGTAAAGGCGAATGGCTAGTGTGAAATATGTA
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
41365833 GGCGATGTGT
Statistics
Matches: 498, Mismatches: 30, Indels: 22
0.91 0.05 0.04
Matches are distributed among these distances:
47 1 0.00
48 269 0.54
49 46 0.09
50 93 0.19
51 6 0.01
52 83 0.17
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.31
Consensus pattern (48 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:41365589 original size:198 final size:195
Alignment explanation
Indices: 41365246--41365832 Score: 896
Period size: 198 Copynumber: 3.0 Consensus size: 195
41365236 TTGATGCATA
* *
41365246 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
1 AGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGT
* * * *
41365311 AAAGCCGAATGGCTAATGCGAAATATATATATATGAGATATGTATATGTAGTAAAGCTGAATGGT
66 AAAGCCGAATGGCTAATGTG-AA-A-ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGC
*
41365376 TAATGTGAAATATATATATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
128 TAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
41365441 ATG
193 ATG
41365444 AGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGT
1 AGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGT
*
41365509 AAAGCCGAATGGCTAATGTG-AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAA
66 AAAGCCGAATGGCTAATGTGAAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAA
* * * *
41365573 TGCGAAATATATATATATGAGATATGTATATGTGGTAAAGCTGAATGGTTAATGTGAAATATATA
131 TGTG-AA-ATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATG
41365638 TATG
192 TATG
*
41365642 AGATAT-CTATATGTGGTAAAGCTGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGG
1 AGATATGC-ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGG
*
41365706 TAAAGCCGAATGG-TCAATGTGAAAATATATATGAGATATGTATCTGTGGTAAAGCCGAATGGCT
65 TAAAGCCGAATGGCT-AATGTGAAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCT
* * * *
41365770 AGTGTG-AA-ATATGTATGAGATATGTATATGTGGTAAAGGCGAATGGCTAGTGTGAAATATGTA
129 AATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
41365833 GGCGATGTGT
Statistics
Matches: 359, Mismatches: 23, Indels: 19
0.90 0.06 0.05
Matches are distributed among these distances:
193 6 0.02
194 43 0.12
195 44 0.12
196 47 0.13
197 5 0.01
198 170 0.47
199 44 0.12
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.31
Consensus pattern (195 bp):
AGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGT
AAAGCCGAATGGCTAATGTGAAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAA
TGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:41365680 original size:246 final size:247
Alignment explanation
Indices: 41365246--41365829 Score: 1048
Period size: 246 Copynumber: 2.4 Consensus size: 247
41365236 TTGATGCATA
41365246 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
41365311 AAAGCCGAATGGCTAATGCGAAATATATATATATGAGATATGTATATGTAGTAAAGCTGAATGGT
66 AAAGCCGAATGGCTAATGCGAAATATATATATATGAGATATGTATATGTAGTAAAGCTGAATGGT
41365376 TAATGTGAAATATATATATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
131 TAATGTGAAATATATATATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
*
41365441 ATGAGATATGCATATGTGGTAAAGCCGAATGG-CTAATGTG-AAATATGTATG
196 ATGAGATATGCATATGTGGTAAAGCCGAATGGTC-AATGTGAAAATATATATG
*
41365492 AGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
*
41365557 AAAGCCGAATGGCTAATGCGAAATATATATATATGAGATATGTATATGTGGTAAAGCTGAATGGT
66 AAAGCCGAATGGCTAATGCGAAATATATATATATGAGATATGTATATGTAGTAAAGCTGAATGGT
*
41365622 TAATGTGAAATATATATATGAGATAT-CTATATGTGGTAAAGCTGAATGGCTAATGTGAAATATG
131 TAATGTGAAATATATATATGAGATATGC-ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
41365686 TATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAAATATATATG
195 TATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAAATATATATG
* *
41365739 AGATATGTATCTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
* * *
41365804 AAAGGCGAATGGCTAGTGTGAAATAT
66 AAAGCCGAATGGCTAATGCGAAATAT
41365830 GTAGGCGATG
Statistics
Matches: 325, Mismatches: 10, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
245 1 0.00
246 228 0.70
247 96 0.30
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (247 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
AAAGCCGAATGGCTAATGCGAAATATATATATATGAGATATGTATATGTAGTAAAGCTGAATGGT
TAATGTGAAATATATATATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
ATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAAATATATATG
Found at i:41366087 original size:37 final size:37
Alignment explanation
Indices: 41365979--41366087 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
41365969 GGAAATATAT
*
41365979 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
41366016 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
41366053 TCCGGGTAAGACCCGATAACTTCGTATGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
41366088 CATCTGAGCT
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:41369814 original size:46 final size:46
Alignment explanation
Indices: 41369747--41369872 Score: 243
Period size: 46 Copynumber: 2.7 Consensus size: 46
41369737 TGTAACCTGC
*
41369747 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGAGCGTTCGCAT
41369793 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGAGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGAGCGTTCGCAT
41369839 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC
41369873 AAAACTCAAA
Statistics
Matches: 79, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.29, C:0.31, G:0.21, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGAGCGTTCGCAT
Found at i:41373089 original size:43 final size:43
Alignment explanation
Indices: 41373018--41373171 Score: 138
Period size: 43 Copynumber: 3.7 Consensus size: 43
41373008 TGTGTTCTCG
* * * * *
41373018 TGTAAGACCACGTCTAGGACGTTAGCATCGATATGTGATTACT
1 TGTAAGACCACGTTTGGGACATTGGCATCGATATGTGATTACA
* * *
41373061 TGTAAGACCATGTTTGGGACATTGGCATC-ATATTTTATT-CA
1 TGTAAGACCACGTTTGGGACATTGGCATCGATATGTGATTACA
* * *
41373102 TGT-AGATC-CTTTCTGGGACAGTGGCATCGATATGTGA-TAGCA
1 TGTAAGACCACGTT-TGGGACATTGGCATCGATATGTGATTA-CA
* *
41373144 TGTAAGACCACGTTCGGGACGTTGGCAT
1 TGTAAGACCACGTTTGGGACATTGGCAT
41373172 TGTACGATAT
Statistics
Matches: 86, Mismatches: 19, Indels: 12
0.74 0.16 0.10
Matches are distributed among these distances:
39 2 0.02
40 19 0.22
41 10 0.12
42 13 0.15
43 39 0.45
44 3 0.03
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (43 bp):
TGTAAGACCACGTTTGGGACATTGGCATCGATATGTGATTACA
Found at i:41373379 original size:20 final size:21
Alignment explanation
Indices: 41373344--41373382 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
41373334 TTGCAAATCA
41373344 TATATGATGTAAATGAAAAAT
1 TATATGATGTAAATGAAAAAT
*
41373365 TATATG-TGTATATGAAAA
1 TATATGATGTAAATGAAAA
41373383 GTACATTCGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.49, C:0.00, G:0.15, T:0.36
Consensus pattern (21 bp):
TATATGATGTAAATGAAAAAT
Found at i:41381079 original size:41 final size:40
Alignment explanation
Indices: 41381026--41381195 Score: 161
Period size: 41 Copynumber: 4.2 Consensus size: 40
41381016 AGTCTGACTC
*
41381026 TTAG-CACCGGCTCAAAAGCCCTTCGAGACTAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACTAAGCTCGGA
* * *
41381065 TTAGACTACTGGCTCGAAGGCCCTTCG-GAATTAAG-TCCGG-
1 TTAGAC-ACTGGCTCAAAAGCCCTTCGAG-ACTAAGCT-CGGA
* *
41381105 TTATGACACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCGGTTA
1 TTA-GACACTGGCTC--AAAAGCCCTTCGAGACTAAGCTCGG--A
*
41381150 TTAG-CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACTAAGCTCGGA
41381189 TTTAGAC
1 -TTAGAC
41381196 CCCGATTAAC
Statistics
Matches: 106, Mismatches: 11, Indels: 26
0.74 0.08 0.18
Matches are distributed among these distances:
39 5 0.05
40 18 0.17
41 51 0.48
42 18 0.17
43 10 0.09
44 1 0.01
45 3 0.03
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (40 bp):
TTAGACACTGGCTCAAAAGCCCTTCGAGACTAAGCTCGGA
Found at i:41384739 original size:57 final size:57
Alignment explanation
Indices: 41384589--41384752 Score: 274
Period size: 57 Copynumber: 2.9 Consensus size: 57
41384579 CATGACATGG
*
41384589 GATTTCCTATATGTGTTCTCGTGTAAGATCACATCTGGGACGTTGGCATCAATATGT
1 GATTTCCTATATGTGTTCTCGTGTAAGATCACGTCTGGGACGTTGGCATCAATATGT
41384646 GATTTCCTATATGTGTTCTCGTGTAAGATCACGTCTGGGACGTTGGCATCAATATGT
1 GATTTCCTATATGTGTTCTCGTGTAAGATCACGTCTGGGACGTTGGCATCAATATGT
* * * * *
41384703 GATTTCCTATATGTGTTCTCTTGTAAGACCATGTCTGGGACATCGGCATC
1 GATTTCCTATATGTGTTCTCGTGTAAGATCACGTCTGGGACGTTGGCATC
41384753 GTATTTAATT
Statistics
Matches: 101, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
57 101 1.00
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.37
Consensus pattern (57 bp):
GATTTCCTATATGTGTTCTCGTGTAAGATCACGTCTGGGACGTTGGCATCAATATGT
Found at i:41384826 original size:43 final size:41
Alignment explanation
Indices: 41384724--41384835 Score: 104
Period size: 41 Copynumber: 2.7 Consensus size: 41
41384714 TGTGTTCTCT
* * *
41384724 TGTAAGACCATGTCTGGGACA-TCGGCATCGTATTTAATTCA
1 TGTAAGACCACGTCTGGGACAGT-GGCATCGTATGTAATGCA
* * *
41384765 TGTAAGACC-CTATTTGGGACAGTGGCATCGATATGTGATAGCA
1 TGTAAGACCAC-GTCTGGGACAGTGGCATCG-TATGTAAT-GCA
41384808 TGTAAGACCACGTCTGGGAC-GTTGGCAT
1 TGTAAGACCACGTCTGGGACAG-TGGCAT
41384836 TGTACGATAT
Statistics
Matches: 57, Mismatches: 8, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
41 24 0.42
42 8 0.14
43 24 0.42
44 1 0.02
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.29
Consensus pattern (41 bp):
TGTAAGACCACGTCTGGGACAGTGGCATCGTATGTAATGCA
Found at i:41385042 original size:20 final size:21
Alignment explanation
Indices: 41385007--41385045 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
41384997 TTGTAAATCA
41385007 TATATGATGTAAATGAAAAAT
1 TATATGATGTAAATGAAAAAT
*
41385028 TATATG-TGTATATGAAAA
1 TATATGATGTAAATGAAAA
41385046 GTACATTTGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.49, C:0.00, G:0.15, T:0.36
Consensus pattern (21 bp):
TATATGATGTAAATGAAAAAT
Found at i:41388822 original size:27 final size:27
Alignment explanation
Indices: 41388792--41388969 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
41388782 ATATCGAGCC
* * *
41388792 CGCACACTCAGTGCTATAAAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
41388819 CGCACACTTAGTGCCACATAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
41388846 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
41388874 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
41388901 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
41388928 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
41388955 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
41388970 GTACAATTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:41388905 original size:82 final size:81
Alignment explanation
Indices: 41388813--41388968 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
41388803 TGCTATAAAA
*
41388813 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGC
1 TCAACTCGCACACTTAGTG-CATCATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGC
41388877 ACACTTAGTGCCGCATGG
64 ACACTTAGTGCCGCATGG
* * **
41388895 TCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCAC
1 TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
41388960 ACTTAGTGC
66 ACTTAGTGC
41388969 TGTACAATTT
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 17 0.25
82 51 0.75
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:41396514 original size:27 final size:27
Alignment explanation
Indices: 41396484--41396661 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
41396474 ATATCGAGCC
* * *
41396484 CGCACACTCAGTGCTATAAAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
41396511 CGCACACTTAGTGCCACATAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
41396538 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
41396566 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
41396593 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
41396620 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
41396647 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
41396662 GTACAATTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:41396597 original size:82 final size:81
Alignment explanation
Indices: 41396505--41396660 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
41396495 TGCTATAAAA
*
41396505 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGC
1 TCAACTCGCACACTTAGTG-CATCATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGC
41396569 ACACTTAGTGCCGCATGG
64 ACACTTAGTGCCGCATGG
* * **
41396587 TCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCAC
1 TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
41396652 ACTTAGTGC
66 ACTTAGTGC
41396661 TGTACAATTT
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 17 0.25
82 51 0.75
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:41398677 original size:40 final size:40
Alignment explanation
Indices: 41398617--41398800 Score: 239
Period size: 40 Copynumber: 4.6 Consensus size: 40
41398607 TATTCGAATG
*
41398617 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * *
41398657 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * *
41398697 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
41398737 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
41398777 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
41398801 CTTGTGCGAG
Statistics
Matches: 126, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
39 1 0.01
40 122 0.97
41 3 0.02
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:41398750 original size:80 final size:80
Alignment explanation
Indices: 41398617--41398800 Score: 264
Period size: 80 Copynumber: 2.3 Consensus size: 80
41398607 TATTCGAATG
* * *
41398617 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAG-TCCCGAAGGC
* *
41398681 ATTTGTGCGAGTTG-CT
65 ATTTATGCGAG-TGACC
* *
41398697 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
*
41398762 TTTATGCTAGTGACC
66 TTTATGCGAGTGACC
41398777 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
41398801 CTTGTGCGAG
Statistics
Matches: 94, Mismatches: 8, Indels: 4
0.89 0.08 0.04
Matches are distributed among these distances:
79 3 0.03
80 91 0.97
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
TTTATGCGAGTGACC
Found at i:41405953 original size:40 final size:40
Alignment explanation
Indices: 41405891--41406074 Score: 239
Period size: 40 Copynumber: 4.6 Consensus size: 40
41405881 TATTCGAATG
*
41405891 ATATCCGGGCTAAG-TCCTGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGATCC-GAAGGCATTTATGCTAGTGACT
* * *
41405931 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * *
41405971 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
41406011 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
41406051 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
41406075 CTTGTGCGAG
Statistics
Matches: 126, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
39 1 0.01
40 120 0.95
41 5 0.04
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:41412812 original size:45 final size:45
Alignment explanation
Indices: 41412762--41412852 Score: 137
Period size: 45 Copynumber: 2.0 Consensus size: 45
41412752 CCAAAACATG
41412762 TGTCACATACATCATGAACTCAGACCACAACTCAATGAGTTCAAA
1 TGTCACATACATCATGAACTCAGACCACAACTCAATGAGTTCAAA
** * * *
41412807 TGTCACATATGTCATGAACTCAGACCACAGCTGAATGAGTTTAAA
1 TGTCACATACATCATGAACTCAGACCACAACTCAATGAGTTCAAA
41412852 T
1 T
41412853 CACATAATTC
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.37, C:0.23, G:0.14, T:0.25
Consensus pattern (45 bp):
TGTCACATACATCATGAACTCAGACCACAACTCAATGAGTTCAAA
Found at i:41417276 original size:27 final size:26
Alignment explanation
Indices: 41417239--41417350 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
41417229 AGCATGGCTG
* *
41417239 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
41417265 CCAGATACAGATAATCATGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
41417293 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
41417320 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
41417347 CCAG
1 CCAG
41417351 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 6 0.08
27 52 0.70
28 16 0.22
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:41417331 original size:54 final size:54
Alignment explanation
Indices: 41417239--41417350 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
41417229 AGCATGGCTG
* *
41417239 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCATGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCATGGCAGAGCCA
* ** *
41417293 CCAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCATGGCAGAGCCA
41417347 CCAG
1 CCAG
41417351 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.15
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCATGGCAGAGCCA
Found at i:41418795 original size:24 final size:24
Alignment explanation
Indices: 41418768--41418814 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
41418758 CTAGATTTCC
**
41418768 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
41418792 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
41418815 CTCTTGACAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.23, C:0.38, G:0.02, T:0.36
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:41423000 original size:27 final size:26
Alignment explanation
Indices: 41422966--41423076 Score: 141
Period size: 27 Copynumber: 4.1 Consensus size: 26
41422956 GCATGGCTGT
* *
41422966 CAGAACAGATAATGTGACAGAGTCAC
1 CAGAACAGATAATGTGGCAGAGCCAC
41422992 CAGATACAGATAATCGTGGCAGAGCCAC
1 CAGA-ACAGATAAT-GTGGCAGAGCCAC
*
41423020 CAGAACAGAAATATGTGGCAGAGCCAC
1 CAGAACAGATA-ATGTGGCAGAGCCAC
* *
41423047 CAGATCAGATAATTGTGGCATAGCCAC
1 CAGAACAGATAA-TGTGGCAGAGCCAC
41423074 CAG
1 CAG
41423077 GACACTTCCT
Statistics
Matches: 75, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 5 0.07
27 53 0.71
28 17 0.23
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (26 bp):
CAGAACAGATAATGTGGCAGAGCCAC
Found at i:41423058 original size:54 final size:54
Alignment explanation
Indices: 41422966--41423076 Score: 161
Period size: 54 Copynumber: 2.1 Consensus size: 54
41422956 GCATGGCTGT
* *
41422966 CAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCAC
1 CAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCAC
* * *
41423020 CAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCAC
1 CAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCAC
41423074 CAG
1 CAG
41423077 GACACTTCCT
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (54 bp):
CAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCAC
Found at i:41424521 original size:24 final size:24
Alignment explanation
Indices: 41424505--41424564 Score: 120
Period size: 24 Copynumber: 2.5 Consensus size: 24
41424495 CCCCTATCTG
41424505 CTCCTAAATCCTATCCCTTATCAA
1 CTCCTAAATCCTATCCCTTATCAA
41424529 CTCCTAAATCCTATCCCTTATCAA
1 CTCCTAAATCCTATCCCTTATCAA
41424553 CTCCTAAATCCT
1 CTCCTAAATCCT
41424565 CTCCTGACAG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.28, C:0.38, G:0.00, T:0.33
Consensus pattern (24 bp):
CTCCTAAATCCTATCCCTTATCAA
Found at i:41427218 original size:13 final size:13
Alignment explanation
Indices: 41427200--41427224 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
41427190 CACATATTCT
41427200 CATCTTTGACATA
1 CATCTTTGACATA
41427213 CATCTTTGACAT
1 CATCTTTGACAT
41427225 GCCTATGAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.40
Consensus pattern (13 bp):
CATCTTTGACATA
Found at i:41433966 original size:11 final size:11
Alignment explanation
Indices: 41433947--41433979 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
41433937 GAAATGGTAG
41433947 TAAAACAACAA
1 TAAAACAACAA
*
41433958 TATAACAACAA
1 TAAAACAACAA
41433969 TAAAACAACAA
1 TAAAACAACAA
41433980 GGAAAAAAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.70, C:0.18, G:0.00, T:0.12
Consensus pattern (11 bp):
TAAAACAACAA
Found at i:41434425 original size:41 final size:41
Alignment explanation
Indices: 41434368--41434446 Score: 149
Period size: 41 Copynumber: 1.9 Consensus size: 41
41434358 CTCTTCTCTC
41434368 AACCAAATATTATTACTTACTAATATTTTCATTATTTTTTA
1 AACCAAATATTATTACTTACTAATATTTTCATTATTTTTTA
*
41434409 AACCAAATATTCTTACTTACTAATATTTTCATTATTTT
1 AACCAAATATTATTACTTACTAATATTTTCATTATTTT
41434447 GGATTAAAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.35, C:0.14, G:0.00, T:0.51
Consensus pattern (41 bp):
AACCAAATATTATTACTTACTAATATTTTCATTATTTTTTA
Found at i:41438846 original size:28 final size:28
Alignment explanation
Indices: 41438814--41438883 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
41438804 AATGAGATTG
41438814 GCACTAAGTGTGCGAGTTT-AAT-TGTATA
1 GCACTAAGTGTGCGAGTTTGAATAT-TA-A
*
41438842 GCACTAAGTGTGCGAGTTTGACTATTAA
1 GCACTAAGTGTGCGAGTTTGAATATTAA
41438870 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
41438884 GACTTACTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 34 0.87
29 4 0.10
30 1 0.03
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGAATATTAA
Found at i:41446532 original size:28 final size:28
Alignment explanation
Indices: 41446500--41446569 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
41446490 AATGAGATTG
41446500 GCACTAAGTGTGCGAGTTT-AAT-TGTATA
1 GCACTAAGTGTGCGAGTTTGAATAT-TA-A
*
41446528 GCACTAAGTGTGCGAGTTTGACTATTAA
1 GCACTAAGTGTGCGAGTTTGAATATTAA
41446556 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
41446570 GACTTACTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 34 0.87
29 4 0.10
30 1 0.03
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGAATATTAA
Found at i:41452944 original size:40 final size:40
Alignment explanation
Indices: 41452889--41452974 Score: 145
Period size: 40 Copynumber: 2.1 Consensus size: 40
41452879 TGTATTGAAT
* *
41452889 GAAATTATTCATTTAGATCAAGATCGGGTGAAAAATCAAG
1 GAAATTATTAATTTAGATCAAGATCGAGTGAAAAATCAAG
41452929 GAAATTATTAATTTAGATCAAGATCGAGTGAAAAATCAAG
1 GAAATTATTAATTTAGATCAAGATCGAGTGAAAAATCAAG
41452969 GTAAAT
1 G-AAAT
41452975 GGGAAAATTA
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
40 39 0.91
41 4 0.09
ACGTcount: A:0.45, C:0.08, G:0.19, T:0.28
Consensus pattern (40 bp):
GAAATTATTAATTTAGATCAAGATCGAGTGAAAAATCAAG
Found at i:41453679 original size:41 final size:41
Alignment explanation
Indices: 41453604--41453681 Score: 97
Period size: 41 Copynumber: 1.9 Consensus size: 41
41453594 ATAGTGATAT
*
41453604 TCGGGCTTTAAGCCTAGCAAGCATTGTGCTGGTGAATGTAA
1 TCGGGCTTTAAGCCTAGCAAGCATTGTGCCGGTGAATGTAA
* *
41453645 TCGGGCTTTATA-CCTAGC-AGGATTATTGCCGGTGAAT
1 TCGGGCTTTA-AGCCTAGCAAGCATT-GTGCCGGTGAAT
41453682 ATAAAATCAG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 5 0.16
41 26 0.81
42 1 0.03
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (41 bp):
TCGGGCTTTAAGCCTAGCAAGCATTGTGCCGGTGAATGTAA
Found at i:41457387 original size:29 final size:28
Alignment explanation
Indices: 41457355--41457442 Score: 72
Period size: 29 Copynumber: 3.1 Consensus size: 28
41457345 TAAAGGACAA
41457355 CCTTTGTGGAAAAACTCTAGAAAGGTAAG
1 CCTTTGTGG-AAAACTCTAGAAAGGTAAG
* ** * *
41457384 CCTTTATGGCGAACATGTTA-AAAGAT-AG
1 CCTTTGTGGAAAAC-T-CTAGAAAGGTAAG
*
41457412 CCTTTGTGGCAAAACTCTAGAAGGGTAAG
1 CCTTTGTGG-AAAACTCTAGAAAGGTAAG
41457441 CC
1 CC
41457443 CTCGTGGCAA
Statistics
Matches: 43, Mismatches: 11, Indels: 10
0.67 0.17 0.16
Matches are distributed among these distances:
27 2 0.05
28 18 0.42
29 21 0.49
30 2 0.05
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.25
Consensus pattern (28 bp):
CCTTTGTGGAAAACTCTAGAAAGGTAAG
Found at i:41459069 original size:18 final size:18
Alignment explanation
Indices: 41459046--41459094 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
41459036 GTTTTTTTAT
41459046 TAAATTATTTATTTAATA
1 TAAATTATTTATTTAATA
*
41459064 TAAATTAGTTT-TATAATA
1 TAAATTA-TTTATTTAATA
*
41459082 -AAATTAATTATTT
1 TAAATTATTTATTT
41459095 GGGTTGGGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
16 2 0.08
17 8 0.31
18 13 0.50
19 3 0.12
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (18 bp):
TAAATTATTTATTTAATA
Found at i:41459565 original size:21 final size:21
Alignment explanation
Indices: 41459539--41459579 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
41459529 ATTTAGATTT
41459539 AAAATTAATTTATAATTTTAA
1 AAAATTAATTTATAATTTTAA
* *
41459560 AAAATTATTTTATTATTTTA
1 AAAATTAATTTATAATTTTA
41459580 TTTTAATTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (21 bp):
AAAATTAATTTATAATTTTAA
Found at i:41462531 original size:13 final size:13
Alignment explanation
Indices: 41462513--41462537 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
41462503 GGCCACCCAT
41462513 ATTATTTTTTTAG
1 ATTATTTTTTTAG
41462526 ATTATTTTTTTA
1 ATTATTTTTTTA
41462538 TATACAAACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.72
Consensus pattern (13 bp):
ATTATTTTTTTAG
Found at i:41466824 original size:38 final size:37
Alignment explanation
Indices: 41466751--41466829 Score: 106
Period size: 38 Copynumber: 2.1 Consensus size: 37
41466741 TATTACGAAA
* *
41466751 TCTTACCCGGACATAATCTCCACACGAAGTTATCGGG
1 TCTTACCCGGACAAAATCTCCACACGAAGTCATCGGG
*
41466788 TCTTACCCGGACAAAAAT-TCCCACACGTAGTCATCGGG
1 TCTTACCCGGAC-AAAATCT-CCACACGAAGTCATCGGG
41466826 TCTT
1 TCTT
41466830 TAGAGCTCAG
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
37 13 0.35
38 24 0.65
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCTCCACACGAAGTCATCGGG
Found at i:41467566 original size:47 final size:47
Alignment explanation
Indices: 41466950--41467563 Score: 940
Period size: 47 Copynumber: 13.0 Consensus size: 47
41466940 CTTCGGGACT
* * * * * * *
41466950 TATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* * *
41466997 TGTCACATATATATACACTTCCACATTCATCACATCGGCCATTAGGCCT
1 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
41467046 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
41467093 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCC
1 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* *
41467142 TATCACGTATATACACTTTCACATTCATCACATCGGCCATTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* * *
41467189 TATCACGTATATACACTTTCACATTCATCACATCGGCCATTCGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
41467236 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* *
41467283 TATCACGTATATACACTTTCACATTCATCACATCGGCCATTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* *
41467330 TATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
41467377 TATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* * *
41467424 TATCACGTATATACACTTTCACATTCATCACACCGGCCATTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* *
41467471 TATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
41467518 TATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
41467564 TTACTATCAT
Statistics
Matches: 528, Mismatches: 35, Indels: 8
0.92 0.06 0.01
Matches are distributed among these distances:
47 446 0.84
49 82 0.16
ACGTcount: A:0.27, C:0.32, G:0.10, T:0.31
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
Found at i:41471898 original size:46 final size:46
Alignment explanation
Indices: 41471848--41472023 Score: 182
Period size: 46 Copynumber: 3.8 Consensus size: 46
41471838 TGATTGAGCA
*
41471848 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
41471894 TCCGAACTCGTTGAGTTAAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
41471939 CATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAG
1 --TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
41471987 -CCTGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
41472024 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 12, Indels: 20
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 60 0.56
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:41472009 original size:93 final size:93
Alignment explanation
Indices: 41471845--41472016 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
41471835 GGATGATTGA
* * *
41471845 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCCGAACTCATTGAGT
41471910 TAAGTCCGAGTTCGTGAGATGTAACTAG
66 TAAGTCCGAGTTCGTGAGATGTAACTAG
*
41471938 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAG-CCTGAGCTCATTGAG
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCC-GAACTCATTGAG
*
41472002 TTGAGTCCGAGTTCG
65 TTAAGTCCGAGTTCG
41472017 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCCGAACTCATTGAGT
TAAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:41474145 original size:49 final size:49
Alignment explanation
Indices: 41474091--41474210 Score: 161
Period size: 49 Copynumber: 2.4 Consensus size: 49
41474081 GTCGATGCTT
* *
41474091 TGTCCTAGACAGGTCTTACACTGACTTTCATATATCGAG-GCCGATGCCA
1 TGTCCTAGATAGGTCTTACACTGACTCTCATATATCG-GTGCCGATGCCA
* * * *
41474140 TGTCCTAGATAGGTCTTACACTGGCTCTCATTTATTGGTGTCGATGCCA
1 TGTCCTAGATAGGTCTTACACTGACTCTCATATATCGGTGCCGATGCCA
*
41474189 TGTCCCAGATAGGTCTTACACT
1 TGTCCTAGATAGGTCTTACACT
41474211 AACACCCAAC
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
48 1 0.02
49 62 0.98
ACGTcount: A:0.22, C:0.25, G:0.21, T:0.33
Consensus pattern (49 bp):
TGTCCTAGATAGGTCTTACACTGACTCTCATATATCGGTGCCGATGCCA
Found at i:41474299 original size:46 final size:46
Alignment explanation
Indices: 41474245--41474351 Score: 126
Period size: 46 Copynumber: 2.3 Consensus size: 46
41474235 TCCTAGATAG
* *
41474245 GTCTTACACTAGCTCTCGTCTCAAT-GCCGATGCATATCCCAGACAT
1 GTCTTACACTAGCTCTCATCT-AATGGCCAATGCATATCCCAGACAT
* * * ** *
41474291 GTCTTACACTGGCACTCATGTTGTGGCCAATGCATGTCCCAGACAT
1 GTCTTACACTAGCTCTCATCTAATGGCCAATGCATATCCCAGACAT
41474337 GTCTTACACTAGCTC
1 GTCTTACACTAGCTC
41474352 ACATACCACC
Statistics
Matches: 50, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
45 1 0.02
46 49 0.98
ACGTcount: A:0.22, C:0.31, G:0.18, T:0.29
Consensus pattern (46 bp):
GTCTTACACTAGCTCTCATCTAATGGCCAATGCATATCCCAGACAT
Found at i:41477622 original size:43 final size:44
Alignment explanation
Indices: 41477559--41477644 Score: 120
Period size: 43 Copynumber: 2.0 Consensus size: 44
41477549 ATCAAAATAT
* * *
41477559 GATATTCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAAC
1 GATATTCGGGCTTCGAGCCTAGAAGGCTATAATGCCAGTGAAAC
* *
41477603 GATA-TCGGGCTTTGAGCCTAGAATGCTATAATGCCAGTGAAA
1 GATATTCGGGCTTCGAGCCTAGAAGGCTATAATGCCAGTGAAA
41477645 TGAAATGTTA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
43 33 0.89
44 4 0.11
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (44 bp):
GATATTCGGGCTTCGAGCCTAGAAGGCTATAATGCCAGTGAAAC
Found at i:41477983 original size:38 final size:38
Alignment explanation
Indices: 41477941--41478154 Score: 347
Period size: 38 Copynumber: 5.6 Consensus size: 38
41477931 TTAAAGACCT
41477941 GCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCC
1 GCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCC
*
41477979 GCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCC
1 GCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCC
*
41478017 GCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCC
1 GCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCC
* *
41478055 GCAGGCTTCGTGCTGGTATTATATCCGAGTTAAATCCT
1 GCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCC
* *
41478093 GTAGGCTTCTTGCTGGTATTATATCCGGGTTAAATCCC
1 GCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCC
* * *
41478131 GCAGGCCTAGTACTGGTATTATAT
1 GCAGGCTTCGTGCTGGTATTATAT
41478155 TCAGGCCTTG
Statistics
Matches: 163, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
38 163 1.00
ACGTcount: A:0.21, C:0.22, G:0.25, T:0.32
Consensus pattern (38 bp):
GCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCC
Found at i:41478221 original size:45 final size:43
Alignment explanation
Indices: 41478158--41478281 Score: 155
Period size: 45 Copynumber: 2.9 Consensus size: 43
41478148 ATTATATTCA
* * *
41478158 GGCCTTGAGCCTAGCAGGCTATTATGCCGGTGAGAT-ACTATTTG
1 GGCCTTGAGCCTAGCAGGCTATAATGCCGGTGACATGA-TA-TCG
41478202 GGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGACATGATATCG
1 GGCC-TTGAGCCTAGCAGGCTATAATGCCGGTGACATGATATCG
* *
41478246 AGCCTTGAGCCTAGCAGGCGA-AATGCCGGTGA-ATGA
1 GGCCTTGAGCCTAGCAGGCTATAATGCCGGTGACATGA
41478282 ATAAAAGTCT
Statistics
Matches: 73, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
41 4 0.05
42 11 0.15
43 16 0.22
44 9 0.12
45 32 0.44
46 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.31, T:0.24
Consensus pattern (43 bp):
GGCCTTGAGCCTAGCAGGCTATAATGCCGGTGACATGATATCG
Found at i:41482271 original size:27 final size:27
Alignment explanation
Indices: 41482240--41482417 Score: 198
Period size: 27 Copynumber: 6.6 Consensus size: 27
41482230 TAAATTGTAC
41482240 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* **
41482267 TGCACTAAGTGTGCGAAATGAAC-ATG-
1 AGCACTAAGTGTGCGATTTG-ACTATGT
* * *
41482293 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
41482321 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
41482349 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
41482376 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
41482403 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
41482418 GACTCGATAT
Statistics
Matches: 130, Mismatches: 16, Indels: 10
0.83 0.10 0.06
Matches are distributed among these distances:
26 2 0.02
27 103 0.79
28 25 0.19
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:41482408 original size:82 final size:81
Alignment explanation
Indices: 41482237--41482417 Score: 222
Period size: 82 Copynumber: 2.2 Consensus size: 81
41482227 GATTAAATTG
*
41482237 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAACATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAACATGATGCACTAA
41482302 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
41482318 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGT-A-GCAC
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGA--ACATGATGCAC
* **
41482381 TAAGTGTGCGAGTTGATTA
63 TAAGTGTGCGAATTGACCA
* *
41482400 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
41482418 GACTCGATAT
Statistics
Matches: 84, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
81 17 0.20
82 63 0.75
83 1 0.01
84 3 0.04
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAACATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:41490476 original size:27 final size:27
Alignment explanation
Indices: 41490445--41490622 Score: 189
Period size: 27 Copynumber: 6.6 Consensus size: 27
41490435 TAAATTGTAC
41490445 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* **
41490472 TGCACTAAGTGTGCGAAATGAAC-ATG-
1 AGCACTAAGTGTGCGATTTG-ACTATGT
* * *
41490498 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
41490526 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
41490554 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
41490581 AGCACTAAGTGTGCAAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
41490608 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
41490623 GACTCGATAT
Statistics
Matches: 128, Mismatches: 18, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
26 2 0.02
27 101 0.79
28 25 0.20
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:41497065 original size:27 final size:27
Alignment explanation
Indices: 41497034--41497211 Score: 198
Period size: 27 Copynumber: 6.6 Consensus size: 27
41497024 TAAATTGTAC
41497034 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* **
41497061 TGCACTAAGTGTGCGAAATGAAC-ATG-
1 AGCACTAAGTGTGCGATTTG-ACTATGT
* * *
41497087 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
41497115 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
41497143 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
41497170 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
41497197 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
41497212 GACTCGATAT
Statistics
Matches: 130, Mismatches: 16, Indels: 10
0.83 0.10 0.06
Matches are distributed among these distances:
26 2 0.02
27 103 0.79
28 25 0.19
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:41497202 original size:82 final size:81
Alignment explanation
Indices: 41497031--41497211 Score: 222
Period size: 82 Copynumber: 2.2 Consensus size: 81
41497021 GATTAAATTG
*
41497031 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAACATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAACATGATGCACTAA
41497096 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
41497112 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGT-A-GCAC
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGA--ACATGATGCAC
* **
41497175 TAAGTGTGCGAGTTGATTA
63 TAAGTGTGCGAATTGACCA
* *
41497194 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
41497212 GACTCGATAT
Statistics
Matches: 84, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
81 17 0.20
82 63 0.75
83 1 0.01
84 3 0.04
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAACATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:41512603 original size:13 final size:13
Alignment explanation
Indices: 41512581--41512613 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
41512571 AAGGGTTTGT
41512581 TTAT-TAAACTAA
1 TTATCTAAACTAA
41512593 TTATCTAAACTAA
1 TTATCTAAACTAA
*
41512606 TTAACTAA
1 TTATCTAA
41512614 TTTAATCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:41513124 original size:13 final size:13
Alignment explanation
Indices: 41513106--41513132 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
41513096 AATAACAAGA
41513106 TCCATCATAGGTT
1 TCCATCATAGGTT
41513119 TCCATCATAGGTT
1 TCCATCATAGGTT
41513132 T
1 T
41513133 TATCCCCCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.22, G:0.15, T:0.41
Consensus pattern (13 bp):
TCCATCATAGGTT
Found at i:41515548 original size:6 final size:6
Alignment explanation
Indices: 41515537--41515616 Score: 85
Period size: 6 Copynumber: 13.5 Consensus size: 6
41515527 AAGAAAATTG
* *
41515537 AAAATA AAAATA AAAATA AAAATA AGAAT- AAAATA AATAAAA TAAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AA-AATA -AAAATA
* *
41515586 AGAATA AGAAT- -AAATA AAAATA AAAATA AAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAA
41515617 TAGGAGGATT
Statistics
Matches: 63, Mismatches: 6, Indels: 10
0.80 0.08 0.13
Matches are distributed among these distances:
4 3 0.05
5 4 0.06
6 48 0.76
7 6 0.10
8 2 0.03
ACGTcount: A:0.79, C:0.00, G:0.04, T:0.17
Consensus pattern (6 bp):
AAAATA
Found at i:41520696 original size:5 final size:5
Alignment explanation
Indices: 41520686--41520710 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
41520676 ATAACTAGTA
41520686 AAATT AAATT AAATT AAATT AAATT
1 AAATT AAATT AAATT AAATT AAATT
41520711 GCAAGAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
AAATT
Found at i:41521012 original size:13 final size:13
Alignment explanation
Indices: 41520990--41521022 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
41520980 AAGGATTTGT
41520990 TTAT-TAAACTAA
1 TTATCTAAACTAA
41521002 TTATCTAAACTAA
1 TTATCTAAACTAA
*
41521015 TTAACTAA
1 TTATCTAA
41521023 TTAAATCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:41532953 original size:49 final size:49
Alignment explanation
Indices: 41532890--41533009 Score: 143
Period size: 49 Copynumber: 2.4 Consensus size: 49
41532880 GTCTATGCTG
* *
41532890 TGTCCTATACAGGTCTTACACTGACTTTCATATATCGCATCTT-ATGCCA
1 TGTCCCATACAGGTCTTACACTGACTCTCATATATCG-ATCTTGATGCCA
* * * * * *
41532939 TGTCCCATATAGGTCTTACACTGGCTCTCATTTATCGGTGTTGATGCCC
1 TGTCCCATACAGGTCTTACACTGACTCTCATATATCGATCTTGATGCCA
*
41532988 TGTCCCAGACAGGTCTTACACT
1 TGTCCCATACAGGTCTTACACT
41533010 AACACCTAAC
Statistics
Matches: 60, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
48 3 0.05
49 57 0.95
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.35
Consensus pattern (49 bp):
TGTCCCATACAGGTCTTACACTGACTCTCATATATCGATCTTGATGCCA
Found at i:41533097 original size:46 final size:46
Alignment explanation
Indices: 41532988--41533143 Score: 124
Period size: 46 Copynumber: 3.4 Consensus size: 46
41532978 GTTGATGCCC
* * * * *
41532988 TGTCCCAGACAGGTCTTACACTAACAC-C-TAACAAG-CTGATGCTA
1 TGTCCCAGACATGTCTTACACTAGCACTCATCATAAGACCGATGC-A
* * * *
41533032 TGTCCCA-A-ATAGATATTACACTAGCTCTCGTCTTAAGACCGATGCA
1 TGTCCCAGACAT-G-TCTTACACTAGCACTCATCATAAGACCGATGCA
* * * **
41533078 TGTCCCAGACATGTCTTACACTGGCACTCATGATATGGTCGATGCA
1 TGTCCCAGACATGTCTTACACTAGCACTCATCATAAGACCGATGCA
41533124 TGTCCCAGACATGTCTTACA
1 TGTCCCAGACATGTCTTACA
41533144 TTGGCTCACA
Statistics
Matches: 88, Mismatches: 17, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
42 1 0.01
43 2 0.02
44 18 0.20
45 1 0.01
46 56 0.64
47 8 0.09
48 2 0.02
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (46 bp):
TGTCCCAGACATGTCTTACACTAGCACTCATCATAAGACCGATGCA
Found at i:41540694 original size:21 final size:21
Alignment explanation
Indices: 41540640--41540695 Score: 76
Period size: 21 Copynumber: 2.7 Consensus size: 21
41540630 GTGGAGGTCT
*
41540640 ACACACCCATGTGAAGGCCAC
1 ACACGCCCATGTGAAGGCCAC
*
41540661 ACACGCTCATGTGAAGGCCAC
1 ACACGCCCATGTGAAGGCCAC
* *
41540682 ACATGCCCGTGTGA
1 ACACGCCCATGTGA
41540696 GTAACCTATG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.29, C:0.34, G:0.23, T:0.14
Consensus pattern (21 bp):
ACACGCCCATGTGAAGGCCAC
Found at i:41542210 original size:10 final size:10
Alignment explanation
Indices: 41542195--41542244 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
41542185 TAATTTTAGG
41542195 ATTTAT-TTT
1 ATTTATCTTT
41542204 CATTTATCTTT
1 -ATTTATCTTT
*
41542215 AATTATCTTT
1 ATTTATCTTT
41542225 ATTTAT-TTGT
1 ATTTATCTT-T
41542235 ATTTATCTTT
1 ATTTATCTTT
41542245 TAGAATTTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 2 0.06
10 28 0.80
11 5 0.14
ACGTcount: A:0.22, C:0.08, G:0.02, T:0.68
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:41550880 original size:79 final size:80
Alignment explanation
Indices: 41550779--41550961 Score: 230
Period size: 79 Copynumber: 2.3 Consensus size: 80
41550769 TACTCGTTCA
* *
41550779 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
41550842 ATTTAGTAAC-TCGCACC
64 ATATAGTAACTTAGCA-C
* **
41550859 AATGCCTTCGAG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
*
41550923 ATAGTCACTTAGCAC
66 ATAGTAACTTAGCAC
*
41550938 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
41550962 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 27 0.30
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:41550961 original size:40 final size:40
Alignment explanation
Indices: 41550758--41550961 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
41550748 CGGAATTTAA
** *
41550758 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
41550798 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
41550838 CCGGATTTAGTAACTCGCACCAATGCCTTCGAG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
41550877 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
41550917 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
41550957 CCGGA
1 CCGGA
41550962 CATCATTCGA
Statistics
Matches: 140, Mismatches: 17, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
38 1 0.01
39 33 0.24
40 94 0.67
41 12 0.09
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:41553274 original size:40 final size:40
Alignment explanation
Indices: 41553226--41553450 Score: 362
Period size: 40 Copynumber: 5.6 Consensus size: 40
41553216 GCTACTCCCT
*
41553226 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
41553266 CAAATGCCTTTGGGACTTAGCCCGGATATAGTAACTCTCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
41553306 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
41553346 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* ** * *
41553386 CAAATGCCTTCAGGACTTAGCTTGGA-ATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
41553426 CAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
41553451 TTGTCATTCG
Statistics
Matches: 171, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 1 0.01
40 170 0.99
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:41559658 original size:6 final size:6
Alignment explanation
Indices: 41559647--41559698 Score: 63
Period size: 6 Copynumber: 8.5 Consensus size: 6
41559637 AGGCAACCCA
41559647 ATTTTT ATTTTT ATTTTT ATTTTT A-TTTT ATCTTATT A-TTTT ATTATTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT AT-TT-TT ATTTTT ATT-TTT
41559696 ATT
1 ATT
41559699 ATTTTCAGAT
Statistics
Matches: 41, Mismatches: 0, Indels: 9
0.82 0.00 0.18
Matches are distributed among these distances:
5 8 0.20
6 22 0.54
7 8 0.20
8 3 0.07
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (6 bp):
ATTTTT
Found at i:41560641 original size:96 final size:96
Alignment explanation
Indices: 41560443--41560641 Score: 258
Period size: 95 Copynumber: 2.1 Consensus size: 96
41560433 AATTAATTTT
* **
41560443 TAAGAATGTGTTGGGCTGAGTAACCGGGGTGAGGCGCTTGGCTATCATCTTTCTTCTCGTCAAAA
1 TAAGAATGTGTTGGGCTGAGTAACCGGGGTGAGGCGCTTGGCTATCATCTCTCTTAGCGTCAAAA
* * * * *
41560508 GGTTCGATATGTTCTTAAGAAAAATAAAAAT
66 GGCTCAATATATTCCTAAGAAAAATAAAAAA
* * *
41560539 TAAGAATGTGTTGGGCTGAGTAA-CGGGGTGGGGTGCTTGGCTGTCATCTCTCTTAGCGTCAAAA
1 TAAGAATGTGTTGGGCTGAGTAACCGGGGTGAGGCGCTTGGCTATCATCTCTCTTAGCGTCAAAA
*
41560603 GGCTCAATATATTCCTAAGTAAATATAAATAAA
66 GGCTCAATATATTCCTAAG-AAAAATAAA-AAA
41560636 T-AGAAT
1 TAAGAAT
41560642 TAAAAAAAAG
Statistics
Matches: 89, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
95 50 0.56
96 36 0.40
97 3 0.03
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (96 bp):
TAAGAATGTGTTGGGCTGAGTAACCGGGGTGAGGCGCTTGGCTATCATCTCTCTTAGCGTCAAAA
GGCTCAATATATTCCTAAGAAAAATAAAAAA
Found at i:41561318 original size:10 final size:10
Alignment explanation
Indices: 41561303--41561354 Score: 59
Period size: 10 Copynumber: 5.1 Consensus size: 10
41561293 TAATTTTAGG
41561303 ATTTATTTTT
1 ATTTATTTTT
*
41561313 ATTTATATTT
1 ATTTATTTTT
* *
41561323 AATTATATTT
1 ATTTATTTTT
*
41561333 ATTTATTTGT
1 ATTTATTTTT
41561343 ATTTATCTTTT
1 ATTTAT-TTTT
41561354 A
1 A
41561355 GAATTTAATT
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
10 31 0.89
11 4 0.11
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (10 bp):
ATTTATTTTT
Found at i:41564739 original size:14 final size:16
Alignment explanation
Indices: 41564707--41564739 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
41564697 TTATATTAAT
41564707 TAATATGTTAAAAATA
1 TAATATGTTAAAAATA
41564723 TAATAT-TTAAAAA-A
1 TAATATGTTAAAAATA
41564737 TAA
1 TAA
41564740 ATTAAATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 4 0.24
15 7 0.41
16 6 0.35
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (16 bp):
TAATATGTTAAAAATA
Found at i:41566036 original size:194 final size:194
Alignment explanation
Indices: 41565707--41566094 Score: 609
Period size: 194 Copynumber: 2.0 Consensus size: 194
41565697 ATTTGATACT
* *
41565707 AATATTTTTCTCAAGCACCCAAGTTTGACTTCAATGTTCTATTTAGAATCCGGGAAAGTTATGGT
1 AATATTTTTCCCAAGCACCCAAGTTTGACTTCAATGTTCTATTTAGAATCCGAGAAAGTTATGGT
41565772 CCCAAGTAAGCATCTATAATTTTTTTACTAGATTAGACATCAAAGACTCGTTGGACCACATGATG
66 CCCAAGTAAGCATCTATAATTTTTTTACTAGATTAGACATCAAAGACTCGTTGGACCACATGATG
* * *
41565837 CCATTTGGTTTAGGTACCAAAT-TGAACATTGAAATCAAACTCAGGTAGCAAATTAGGATGAATG
131 CCATTTGGTTTAGGTACC-AATGTCAACATTGAAACCAAACTCAGGTAGCAAATTAGGACGAATG
* * * *
41565901 AATATTTTTCCCAAGTACCCAAGTTTGACTTCAATGTTCTATTTAGTATCCGAGAATGTTTTGGT
1 AATATTTTTCCCAAGCACCCAAGTTTGACTTCAATGTTCTATTTAGAATCCGAGAAAGTTATGGT
* * * * *
41565966 CCCAATTAAGTATCTAT-ATTCTTTTTACTAGATTATACATCAAATACTCGTTGGACTACATGAT
66 CCCAAGTAAGCATCTATAATT-TTTTTACTAGATTAGACATCAAAGACTCGTTGGACCACATGAT
*
41566030 GCCATTTGGTTTAGGTACCAATGTCAACATTGAAGCCAAACTCAGGTAGCAAATTAGGACGAATG
130 GCCATTTGGTTTAGGTACCAATGTCAACATTGAAACCAAACTCAGGTAGCAAATTAGGACGAATG
41566095 GAAACTTAGG
Statistics
Matches: 177, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
193 6 0.03
194 171 0.97
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.34
Consensus pattern (194 bp):
AATATTTTTCCCAAGCACCCAAGTTTGACTTCAATGTTCTATTTAGAATCCGAGAAAGTTATGGT
CCCAAGTAAGCATCTATAATTTTTTTACTAGATTAGACATCAAAGACTCGTTGGACCACATGATG
CCATTTGGTTTAGGTACCAATGTCAACATTGAAACCAAACTCAGGTAGCAAATTAGGACGAATG
Found at i:41566958 original size:39 final size:38
Alignment explanation
Indices: 41566907--41566984 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 38
41566897 AATAACTTAA
* *
41566907 ATGTTATAATACATGATTTATCTCAATTACATCCATAT
1 ATGTTATAATACATAATATATCTCAATTACATCCATAT
41566945 ATGTTATATATACATAATATATCTCAATTACATCCATAT
1 ATGTTATA-ATACATAATATATCTCAATTACATCCATAT
41566984 A
1 A
41566985 AATATATTTA
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
38 8 0.22
39 29 0.78
ACGTcount: A:0.40, C:0.15, G:0.04, T:0.41
Consensus pattern (38 bp):
ATGTTATAATACATAATATATCTCAATTACATCCATAT
Found at i:41567430 original size:15 final size:15
Alignment explanation
Indices: 41567410--41567440 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
41567400 TTGGTTATCC
41567410 TTTTTGCCTAGCCTA
1 TTTTTGCCTAGCCTA
41567425 TTTTTGCCTAGCCTA
1 TTTTTGCCTAGCCTA
41567440 T
1 T
41567441 CTTTCTAGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.26, G:0.13, T:0.48
Consensus pattern (15 bp):
TTTTTGCCTAGCCTA
Found at i:41570921 original size:16 final size:16
Alignment explanation
Indices: 41570870--41570921 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
41570860 TGGTTCACTC
*
41570870 TAATGGAATAGAGATG
1 TAATGGAATAAAGATG
* *
41570886 TAATAGAATAAA-ATTA
1 TAATGGAATAAAGA-TG
*
41570902 TAATGGAATAAAGCTG
1 TAATGGAATAAAGATG
41570918 TAAT
1 TAAT
41570922 AAGTAATTCA
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
15 1 0.04
16 27 0.96
ACGTcount: A:0.50, C:0.02, G:0.19, T:0.29
Consensus pattern (16 bp):
TAATGGAATAAAGATG
Found at i:41571161 original size:58 final size:57
Alignment explanation
Indices: 41571081--41571266 Score: 218
Period size: 58 Copynumber: 3.2 Consensus size: 57
41571071 ATTATTATTG
* *
41571081 TTAATAA-ATTTTAATAGGATTATTATTAAATATATAATTTAATAAAAAATAAATAAT
1 TTAATAATATTTTAATAGAATTATTATTAAATATA-AATTTAATAAAAAATATATAAT
* * *
41571138 TTAATCATATTTTAATATAATTATTATAAAATA-AAATTTAATAAAAATAAAAATATATAAT
1 TTAATAATATTTTAATAGAATTATTATTAAATATAAATTTAAT----A-AAAAATATATAAT
41571199 TTAATAATATTCTTAATAGAATTATTATTTAAATATAAA-TTAATAAAAAATATATAAT
1 TTAATAATATT-TTAATAGAATTATTA-TTAAATATAAATTTAATAAAAAATATATAAT
*
41571257 AT-ATAATATT
1 TTAATAATATT
41571267 AAAAAAATAA
Statistics
Matches: 111, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
56 8 0.07
57 15 0.14
58 36 0.32
59 1 0.01
60 1 0.01
61 22 0.20
62 14 0.13
63 11 0.10
64 3 0.03
ACGTcount: A:0.55, C:0.01, G:0.02, T:0.42
Consensus pattern (57 bp):
TTAATAATATTTTAATAGAATTATTATTAAATATAAATTTAATAAAAAATATATAAT
Found at i:41571792 original size:20 final size:20
Alignment explanation
Indices: 41571769--41571830 Score: 79
Period size: 21 Copynumber: 3.0 Consensus size: 20
41571759 CAAAAAGAAC
* *
41571769 CGATTTAAACCACAATGAAT
1 CGATTTAAACAAGAATGAAT
* *
41571789 CGATTCAAACAAGAGAAGAAT
1 CGATTTAAACAAGA-ATGAAT
41571810 CGATTTAAACAAGAATGAAT
1 CGATTTAAACAAGAATGAAT
41571830 C
1 C
41571831 TATTCAAATA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
20 17 0.49
21 18 0.51
ACGTcount: A:0.48, C:0.16, G:0.15, T:0.21
Consensus pattern (20 bp):
CGATTTAAACAAGAATGAAT
Found at i:41571811 original size:21 final size:20
Alignment explanation
Indices: 41571762--41571838 Score: 73
Period size: 20 Copynumber: 3.8 Consensus size: 20
41571752 GTTAATCCAA
* * * *
41571762 AAAGAACCGATTTAAACCAC
1 AAAGAATCGATTCAAACAAG
*
41571782 AATGAATCGATTCAAACAAG
1 AAAGAATCGATTCAAACAAG
*
41571802 AGAAGAATCGATTTAAACAAG
1 A-AAGAATCGATTCAAACAAG
* *
41571823 AATGAATCTATTCAAA
1 AAAGAATCGATTCAAA
41571839 TAACAAAACA
Statistics
Matches: 46, Mismatches: 10, Indels: 2
0.79 0.17 0.03
Matches are distributed among these distances:
20 28 0.61
21 18 0.39
ACGTcount: A:0.51, C:0.16, G:0.13, T:0.21
Consensus pattern (20 bp):
AAAGAATCGATTCAAACAAG
Found at i:41573620 original size:50 final size:50
Alignment explanation
Indices: 41573545--41573647 Score: 206
Period size: 50 Copynumber: 2.1 Consensus size: 50
41573535 AGTATAGGTG
41573545 TCTGTATATGTGTTCTCGAGATATGCCCCTAATCAGCAGTCACACCCTAT
1 TCTGTATATGTGTTCTCGAGATATGCCCCTAATCAGCAGTCACACCCTAT
41573595 TCTGTATATGTGTTCTCGAGATATGCCCCTAATCAGCAGTCACACCCTAT
1 TCTGTATATGTGTTCTCGAGATATGCCCCTAATCAGCAGTCACACCCTAT
41573645 TCT
1 TCT
41573648 ATGTGACAAA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 53 1.00
ACGTcount: A:0.23, C:0.28, G:0.16, T:0.33
Consensus pattern (50 bp):
TCTGTATATGTGTTCTCGAGATATGCCCCTAATCAGCAGTCACACCCTAT
Found at i:41574349 original size:27 final size:28
Alignment explanation
Indices: 41574308--41574364 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 28
41574298 AATTTTTTTA
*
41574308 ATTAAGTGATCAAAAC-AAGAATTTATTC
1 ATTAAGTGATCAAAACGAA-AATTTAGTC
*
41574336 ATTAA-TGATTAAAACGAAAATTTAGTC
1 ATTAAGTGATCAAAACGAAAATTTAGTC
41574363 AT
1 AT
41574365 AATTTACCCT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
27 19 0.73
28 7 0.27
ACGTcount: A:0.47, C:0.09, G:0.11, T:0.33
Consensus pattern (28 bp):
ATTAAGTGATCAAAACGAAAATTTAGTC
Found at i:41578147 original size:24 final size:25
Alignment explanation
Indices: 41578101--41578157 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 25
41578091 AATTTCATGG
* *
41578101 AAAGGCTTTGTGACGAATTCTCTAA
1 AAAGCCTTTGTGACGAATCCTCTAA
* *
41578126 AAAGCCTTTGT-AGGAATCCTCTAG
1 AAAGCCTTTGTGACGAATCCTCTAA
*
41578150 AAACCCTT
1 AAAGCCTT
41578158 GTGGAGAGTC
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
24 17 0.63
25 10 0.37
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.30
Consensus pattern (25 bp):
AAAGCCTTTGTGACGAATCCTCTAA
Found at i:41582569 original size:42 final size:43
Alignment explanation
Indices: 41582461--41582619 Score: 119
Period size: 43 Copynumber: 3.7 Consensus size: 43
41582451 ATCAAGTACA
** * * * *
41582461 ATGCCGACATCCCAGACGTGGTCTTACATGTAATTCAATATCG
1 ATGCCGATGTCCCAGACATGGTCTTACACGAAAATCAATATCG
* ** * * *
41582504 ATTCCTCTGTCCTAGATAGGGTCTTACACG-AAATCAGATAT-G
1 ATGCCGATGTCCCAGACATGGTCTTACACGAAAATCA-ATATCG
* *
41582546 ATGCCGATGTCCCAGACATGGTCTTATACGAAAATCTCA-ATCG
1 ATGCCGATGTCCCAGACATGGTCTTACACGAAAATC-AATATCG
* *
41582589 AGGCCTG-TGTCCCAGACACGGTCTTACACGA
1 ATGCC-GATGTCCCAGACATGGTCTTACACGA
41582620 TGTCACAGAC
Statistics
Matches: 89, Mismatches: 22, Indels: 10
0.74 0.18 0.08
Matches are distributed among these distances:
42 31 0.35
43 57 0.64
44 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (43 bp):
ATGCCGATGTCCCAGACATGGTCTTACACGAAAATCAATATCG
Found at i:41582922 original size:46 final size:46
Alignment explanation
Indices: 41582855--41582943 Score: 178
Period size: 46 Copynumber: 1.9 Consensus size: 46
41582845 CCCGATCTAA
41582855 GTCCGATTTTCTTTATTCTTGATCTAATACAATACAAATTCAATAG
1 GTCCGATTTTCTTTATTCTTGATCTAATACAATACAAATTCAATAG
41582901 GTCCGATTTTCTTTATTCTTGATCTAATACAATACAAATTCAA
1 GTCCGATTTTCTTTATTCTTGATCTAATACAATACAAATTCAA
41582944 CCATTCAATC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.33, C:0.18, G:0.08, T:0.42
Consensus pattern (46 bp):
GTCCGATTTTCTTTATTCTTGATCTAATACAATACAAATTCAATAG
Found at i:41598445 original size:40 final size:40
Alignment explanation
Indices: 41598401--41598528 Score: 202
Period size: 40 Copynumber: 3.1 Consensus size: 40
41598391 TCGATATAAC
41598401 ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTA
1 ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTA
41598441 ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
1 ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGT-A
* * *
41598482 TATATATATCTGGGTTAAATCTCGCAGGCTTAGTGCTGGTA
1 -ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTA
*
41598523 CTATAT
1 ATATAT
41598529 CCGGACTTAA
Statistics
Matches: 82, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
40 44 0.54
41 2 0.02
42 36 0.44
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.33
Consensus pattern (40 bp):
ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTA
Found at i:41598487 original size:42 final size:42
Alignment explanation
Indices: 41598401--41598528 Score: 206
Period size: 42 Copynumber: 3.1 Consensus size: 42
41598391 TCGATATAAC
41598401 ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGT-A-
1 ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
41598441 ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
1 ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
* * * *
41598483 ATATATATCTGGGTTAAATCTCGCAGGCTTAGTGCTGGTACT
1 ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
41598525 ATAT
1 ATAT
41598529 CCGGACTTAA
Statistics
Matches: 82, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
40 39 0.48
41 1 0.01
42 42 0.51
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.33
Consensus pattern (42 bp):
ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
Found at i:41604960 original size:26 final size:27
Alignment explanation
Indices: 41604933--41605085 Score: 186
Period size: 27 Copynumber: 5.7 Consensus size: 27
41604923 GTGCTATAAA
*
41604933 TCAACTCGCACACTTAGTGCCAC-TAA
1 TCAACTCGCACACTTAGTGCCACATAG
* *
41604959 TCAAATCGCACACTTAGTGCTACATAG
1 TCAACTCGCACACTTAGTGCCACATAG
* *
41604986 TCAACTCGCACACTTAGTGCCGCATGG
1 TCAACTCGCACACTTAGTGCCACATAG
* *
41605013 TCAATTCGCACACTTAGTG-CATCATAT
1 TCAACTCGCACACTTAGTGCCA-CATAG
** *
41605040 TCATTTCGCACACTTAGTGCAACATAG
1 TCAACTCGCACACTTAGTGCCACATAG
41605067 TCAA-TCGCACACTTAGTGC
1 TCAACTCGCACACTTAGTGC
41605086 TGTACAATTT
Statistics
Matches: 109, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
26 37 0.34
27 71 0.65
28 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
TCAACTCGCACACTTAGTGCCACATAG
Found at i:41604997 original size:27 final size:27
Alignment explanation
Indices: 41604914--41605086 Score: 185
Period size: 27 Copynumber: 6.6 Consensus size: 27
41604904 ATATCGAGCC
* *
41604914 CGCACAC-TAGTGCTATA-AATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* * *
41604939 CGCACACTTAGTGCCAC-TAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
41604965 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
** * *
41604992 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
41605019 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
*
41605046 CGCACACTTAGTGCAACATAGTCAA-T
1 CGCACACTTAGTGCTACATAGTCAACT
41605072 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
41605087 GTACAATTTA
Statistics
Matches: 126, Mismatches: 17, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
25 7 0.06
26 45 0.36
27 73 0.58
28 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:41605049 original size:54 final size:53
Alignment explanation
Indices: 41604914--41605086 Score: 210
Period size: 54 Copynumber: 3.3 Consensus size: 53
41604904 ATATCGAGCC
* * *
41604914 CGCACAC-TAGTGCTATA-AATCAACTCGCACACTTAGTGCCAC-TAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCACATAGTC-AAT
* *
41604965 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCACATAGTCAA-T
* ** *
41605019 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAT
1 CGCACACTTAGTGCTA-CATAGTCAACTCGCACACTTAGTGCCACATAGTCAAT
41605072 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
41605087 GTACAATTTA
Statistics
Matches: 105, Mismatches: 11, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
51 7 0.07
52 9 0.09
53 41 0.39
54 48 0.46
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (53 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCACATAGTCAAT
Found at i:41612914 original size:27 final size:27
Alignment explanation
Indices: 41612884--41613061 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
41612874 ATATCGAGCC
* * * *
41612884 CGCACACTTAGTGCTATAAAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
41612911 CGCACACTTAGTGCCACATAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
41612938 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
* ** * *
41612966 CGCACACGTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
41612993 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
41613020 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
41613047 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
41613062 GTACAATTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 105 0.82
28 23 0.18
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:41612997 original size:82 final size:81
Alignment explanation
Indices: 41612905--41613060 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
41612895 TGCTATAAAA
*
41612905 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGC
1 TCAACTCGCACACTTAGTG-CATCATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGC
41612969 ACACGTAGTGCCGCATGG
64 ACACGTAGTGCCGCATGG
* * **
41612987 TCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCAC
1 TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
*
41613052 ACTTAGTGC
66 ACGTAGTGC
41613061 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACGTAGTGCCGCATGG
Found at i:41624582 original size:48 final size:48
Alignment explanation
Indices: 41624500--41624670 Score: 245
Period size: 48 Copynumber: 3.6 Consensus size: 48
41624490 AGATCTAGTT
**
41624500 TAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTATGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGTATTGATATGTATGCCAGTG
* * *
41624548 TATGACCATGTTTGGGACATGGCTTCGGTATTGATATGTATGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGTATTGATATGTATGCCAGTG
* *
41624596 TAAGACCATGTCTGGGACATGGCATCGGTGA-TGATATGTGTGCAAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGT-ATTGATATGTATGCCAGTG
**
41624644 TAAGACCATGTCTGATACATGGCATCG
1 TAAGACCATGTCTGGGACATGGCATCG
41624671 ACACCAATAT
Statistics
Matches: 110, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
48 109 0.99
49 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.29
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATCGGTATTGATATGTATGCCAGTG
Found at i:41624696 original size:96 final size:96
Alignment explanation
Indices: 41624491--41624700 Score: 235
Period size: 96 Copynumber: 2.2 Consensus size: 96
41624481 TGATTAGTGA
* * * * *
41624491 GATCTAGTTTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTATGCCAGTGTATGACCA
1 GATCTCGTATAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTATGCAAGTGTAAGACCA
* * * ** ***
41624556 TGTTTGGGACATGGCTTCGGTATTGATATGT
66 TGTCTGAGACATGGCATCGACACCAATATGT
* * *
41624587 -ATGC-CAGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATGTGTGCAAGTGTAAGAC
1 GAT-CTC-GTATAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTATGCAAGTGTAAGAC
*
41624650 CATGTCTGATACATGGCATCGACACCAATATGT
64 CATGTCTGAGACATGGCATCGACACCAATATGT
41624683 GATCTCGTATAAGACCAT
1 GATCTCGTATAAGACCAT
41624701 ATCTAGGATA
Statistics
Matches: 93, Mismatches: 17, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
95 2 0.02
96 88 0.95
97 3 0.03
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.30
Consensus pattern (96 bp):
GATCTCGTATAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTATGCAAGTGTAAGACCA
TGTCTGAGACATGGCATCGACACCAATATGT
Found at i:41628872 original size:25 final size:26
Alignment explanation
Indices: 41628813--41628864 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
41628803 AAACAGAATG
* *
41628813 AAGAACGAAAACAGAGAAGGGAAAGA
1 AAGAAGGAAAACAGAGAAGAGAAAGA
41628839 AAGAAGGAAAA-AGAGAA-AGAAAGA
1 AAGAAGGAAAACAGAGAAGAGAAAGA
41628863 AA
1 AA
41628865 AGGAGGAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 8 0.33
25 6 0.25
26 10 0.42
ACGTcount: A:0.67, C:0.04, G:0.29, T:0.00
Consensus pattern (26 bp):
AAGAAGGAAAACAGAGAAGAGAAAGA
Found at i:41635533 original size:43 final size:42
Alignment explanation
Indices: 41635485--41635652 Score: 137
Period size: 43 Copynumber: 4.0 Consensus size: 42
41635475 ATCGAGATGT
*
41635485 GATTACATGTAAGACCATGTCTGGGAAATTGGCATTGTATTG
1 GATTACATGTAAGACCATGTCTGGGATATTGGCATTGTATTG
* * *
41635527 AGATTACGTGTAAGACCATGTCTAGGATATTGACATCAT-TAATT-
1 -GATTACATGTAAGACCATGTCTGGGATATTGGCAT--TGT-ATTG
* * * * * *
41635571 GATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCG-ATTTG
1 GATTACATGTAAGACCATGTCTGGGATATTGGCATTGTA-TTG
* **
41635613 TGATCACATGTAAGACCAAATCTGGGATA-TGGCATTGTAT
1 -GATTACATGTAAGACCATGTCTGGGATATTGGCATTGTAT
41635653 GAGCTTATGT
Statistics
Matches: 98, Mismatches: 19, Indels: 17
0.73 0.14 0.13
Matches are distributed among these distances:
40 1 0.01
41 2 0.02
42 8 0.08
43 82 0.84
44 1 0.01
45 4 0.04
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (42 bp):
GATTACATGTAAGACCATGTCTGGGATATTGGCATTGTATTG
Found at i:41643457 original size:15 final size:15
Alignment explanation
Indices: 41643437--41643480 Score: 88
Period size: 15 Copynumber: 2.9 Consensus size: 15
41643427 AAGTATATTG
41643437 TTAATTCAAAATTAT
1 TTAATTCAAAATTAT
41643452 TTAATTCAAAATTAT
1 TTAATTCAAAATTAT
41643467 TTAATTCAAAATTA
1 TTAATTCAAAATTA
41643481 CTTCTTATGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.45
Consensus pattern (15 bp):
TTAATTCAAAATTAT
Found at i:41644175 original size:23 final size:26
Alignment explanation
Indices: 41644112--41644169 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
41644102 TTCAGGCTAG
41644112 GAAAGTATGATATGATGATTCTAATGA
1 GAAA-TATGATATGATGATTCTAATGA
41644139 GAAATATGATATGATGATTCTAATGA
1 GAAATATGATATGATGATTCTAATGA
41644165 GAAAT
1 GAAAT
41644170 GTATGAATTA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 27 0.87
27 4 0.13
ACGTcount: A:0.43, C:0.03, G:0.21, T:0.33
Consensus pattern (26 bp):
GAAATATGATATGATGATTCTAATGA
Found at i:41644816 original size:31 final size:31
Alignment explanation
Indices: 41644780--41644843 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
41644770 TGGCATACCT
* *
41644780 AAAAGAAAAGCCTGTGTGGCAAACCTTTATA
1 AAAAGAAAAGCCTGTGTGACAAACCTCTATA
* * *
41644811 AAAAGAAGAGCCTTTGTGACAAATCTCTATA
1 AAAAGAAAAGCCTGTGTGACAAACCTCTATA
41644842 AA
1 AA
41644844 GGAAATTCCT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.44, C:0.16, G:0.17, T:0.23
Consensus pattern (31 bp):
AAAAGAAAAGCCTGTGTGACAAACCTCTATA
Found at i:41644886 original size:29 final size:29
Alignment explanation
Indices: 41644854--41644920 Score: 89
Period size: 29 Copynumber: 2.3 Consensus size: 29
41644844 GGAAATTCCT
*
41644854 TTGTGGAAAACTTCTGTACAGAAAAGCCA
1 TTGTGGAAAACCTCTGTACAGAAAAGCCA
* * * *
41644883 TTGTGGCAATCCTCTGTATAGAAAAGCCT
1 TTGTGGAAAACCTCTGTACAGAAAAGCCA
41644912 TTGTGGAAA
1 TTGTGGAAA
41644921 TTCCCTATCA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.28
Consensus pattern (29 bp):
TTGTGGAAAACCTCTGTACAGAAAAGCCA
Found at i:41650790 original size:27 final size:27
Alignment explanation
Indices: 41650752--41650850 Score: 162
Period size: 27 Copynumber: 3.7 Consensus size: 27
41650742 AAGGGAATCA
41650752 TTATGAGGTAAAATGACTGTTTTGCCC
1 TTATGAGGTAAAATGACTGTTTTGCCC
*
41650779 TTATGAGGTAAAATGATTGTTTTGCCC
1 TTATGAGGTAAAATGACTGTTTTGCCC
*
41650806 TTATAAGGTAAAATGACTGTTTTGCCC
1 TTATGAGGTAAAATGACTGTTTTGCCC
* *
41650833 TTATGTGCTAAAATGACT
1 TTATGAGGTAAAATGACT
41650851 ATTTGACCCC
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 66 1.00
ACGTcount: A:0.28, C:0.13, G:0.20, T:0.38
Consensus pattern (27 bp):
TTATGAGGTAAAATGACTGTTTTGCCC
Found at i:41650864 original size:27 final size:27
Alignment explanation
Indices: 41650760--41650866 Score: 90
Period size: 27 Copynumber: 4.0 Consensus size: 27
41650750 CATTATGAGG
* * * *
41650760 TAAAATGACTGTTTTGCCCTTATGAGG
1 TAAAATGACTGATTTGCCCCTATGTGC
* * * ** *
41650787 TAAAATGATTGTTTTGCCCTTATAAGG
1 TAAAATGACTGATTTGCCCCTATGTGC
* *
41650814 TAAAATGACTGTTTTGCCCTTATGTGC
1 TAAAATGACTGATTTGCCCCTATGTGC
41650841 TAAAATGACT-ATTTGACCCCTATGTG
1 TAAAATGACTGATTTG-CCCCTATGTG
41650867 ATGTAACACC
Statistics
Matches: 71, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
26 4 0.06
27 67 0.94
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.38
Consensus pattern (27 bp):
TAAAATGACTGATTTGCCCCTATGTGC
Found at i:41662187 original size:18 final size:18
Alignment explanation
Indices: 41662139--41662246 Score: 110
Period size: 18 Copynumber: 6.1 Consensus size: 18
41662129 CAATCAGTAA
*
41662139 TATTCATTAACAATCAAT
1 TATTCAGTAACAATCAAT
* * * *
41662157 CAATCAG-AACAATTATT
1 TATTCAGTAACAATCAAT
41662174 TATTCAGTAACAATCAAT
1 TATTCAGTAACAATCAAT
* *
41662192 TATTCGGTAACAAACAAT
1 TATTCAGTAACAATCAAT
* * *
41662210 TATTCAATAATAATCAGT
1 TATTCAGTAACAATCAAT
*
41662228 TATTCAGTATCAATCAAT
1 TATTCAGTAACAATCAAT
41662246 T
1 T
41662247 GATCAGTTAT
Statistics
Matches: 69, Mismatches: 20, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
17 13 0.19
18 56 0.81
ACGTcount: A:0.44, C:0.16, G:0.06, T:0.35
Consensus pattern (18 bp):
TATTCAGTAACAATCAAT
Found at i:41662252 original size:26 final size:26
Alignment explanation
Indices: 41662222--41662272 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
41662212 TTCAATAATA
* *
41662222 ATCAGTTATTCAGTATCAATCAATTG
1 ATCAGTTATCCAGTAACAATCAATTG
*
41662248 ATCAGTTATCCAGTAACAGTCAATT
1 ATCAGTTATCCAGTAACAATCAATT
41662273 ATTTAGTAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (26 bp):
ATCAGTTATCCAGTAACAATCAATTG
Found at i:41662319 original size:19 final size:18
Alignment explanation
Indices: 41662269--41662320 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 18
41662259 AGTAACAGTC
*
41662269 AATTATTTAGTAAAAATTA
1 AATTA-TTAGTAACAATTA
*
41662288 GA-TATATAGTAACAATTA
1 AATTAT-TAGTAACAATTA
41662306 AATTATTCAGTAACA
1 AATTATT-AGTAACA
41662321 GTCAATCTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
17 1 0.04
18 15 0.56
19 11 0.41
ACGTcount: A:0.50, C:0.06, G:0.08, T:0.37
Consensus pattern (18 bp):
AATTATTAGTAACAATTA
Found at i:41662711 original size:22 final size:23
Alignment explanation
Indices: 41662679--41662722 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
41662669 GTTAATAGGG
41662679 TATATTTTAATT-AAT-TAACTA
1 TATATTTTAATTCAATATAACTA
41662700 TATATTTTTAATTCAATATAACT
1 TATA-TTTTAATTCAATATAACT
41662723 CCATTCACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 4 0.20
22 8 0.40
23 3 0.15
24 5 0.25
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (23 bp):
TATATTTTAATTCAATATAACTA
Found at i:41671525 original size:21 final size:21
Alignment explanation
Indices: 41671501--41671569 Score: 52
Period size: 21 Copynumber: 3.3 Consensus size: 21
41671491 TGTCCTTCAA
41671501 TCACACAGGTGTGTTCCTCAG
1 TCACACAGGTGTGTTCCTCAG
* ** * *
41671522 TCACATAGGCATGTGCTTCAG
1 TCACACAGGTGTGTTCCTCAG
*
41671543 TCACAC-GGTCGTGTAT-CTCTG
1 TCACACAGGT-GTGT-TCCTCAG
41671564 TCACAC
1 TCACAC
41671570 GGTCTCGATC
Statistics
Matches: 35, Mismatches: 11, Indels: 4
0.70 0.22 0.08
Matches are distributed among these distances:
20 2 0.06
21 33 0.94
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
TCACACAGGTGTGTTCCTCAG
Found at i:41671567 original size:42 final size:42
Alignment explanation
Indices: 41671481--41671573 Score: 102
Period size: 42 Copynumber: 2.2 Consensus size: 42
41671471 ACGGTCTACC
41671481 CACATGGTCATGTCCTTCAATCACACAGGTGTGTTCCTCAGT
1 CACATGGTCATGTCCTTCAATCACACAGGTGTGTTCCTCAGT
* * *
41671523 CACATAGG-CATGTGCTTCAGTCACAC-GGTCGTGTAT-CTCTGT
1 CACAT-GGTCATGTCCTTCAATCACACAGGT-GTGT-TCCTCAGT
*
41671565 CACACGGTC
1 CACATGGTC
41671574 TCGATCTTCC
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
41 5 0.12
42 35 0.81
43 3 0.07
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (42 bp):
CACATGGTCATGTCCTTCAATCACACAGGTGTGTTCCTCAGT
Found at i:41671714 original size:19 final size:21
Alignment explanation
Indices: 41671681--41671724 Score: 74
Period size: 20 Copynumber: 2.2 Consensus size: 21
41671671 CTACTCTACA
41671681 TGTTTAAGTTGTTATAT-ATG
1 TGTTTAAGTTGTTATATAATG
41671701 TGTTTAAG-TGTTATATAATG
1 TGTTTAAGTTGTTATATAATG
41671721 TGTT
1 TGTT
41671725 ATGTTAAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 8 0.35
20 15 0.65
ACGTcount: A:0.25, C:0.00, G:0.20, T:0.55
Consensus pattern (21 bp):
TGTTTAAGTTGTTATATAATG
Found at i:41678301 original size:40 final size:39
Alignment explanation
Indices: 41678241--41678421 Score: 240
Period size: 40 Copynumber: 4.6 Consensus size: 39
41678231 AACCCAAGTA
*
41678241 CCTTCGGGA-TTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAA-TAGCACAAATG
* *
41678279 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAG-CAATAGCACAAATG
* * *
41678319 CCTTCGGGACTTAGCCCGGATAGAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGCAATAGCACAAATG
*
41678359 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATAT-AGCAATAGCACAAATG
*
41678399 CCTTCGGGACTTAACCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
41678422 CATTCGAATA
Statistics
Matches: 127, Mismatches: 11, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
38 8 0.06
39 4 0.03
40 111 0.87
41 4 0.03
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGATATAGCAATAGCACAAATG
Found at i:41678388 original size:80 final size:80
Alignment explanation
Indices: 41678241--41678420 Score: 267
Period size: 80 Copynumber: 2.3 Consensus size: 80
41678231 AACCCAAGTA
* * * *
41678241 CCTTCGGGA-TTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATAAAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
41678304 TCAATAGCACAAAAG
66 TCAATAGCACAAAAG
*
41678319 CCTTCGGGACTTAGCCCGGATAGAATC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATA-AAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
*
41678383 ATCAATAGCACAAATG
65 ATCAATAGCACAAAAG
*
41678399 CCTTCGGGACTTAACCCGGATA
1 CCTTCGGGACTTAGCCCGGATA
41678421 TCATTCGAAT
Statistics
Matches: 92, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
78 9 0.10
79 4 0.04
80 77 0.84
81 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATAAAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
TCAATAGCACAAAAG
Found at i:41695884 original size:41 final size:42
Alignment explanation
Indices: 41695808--41695902 Score: 138
Period size: 41 Copynumber: 2.3 Consensus size: 42
41695798 TACAGGGGAC
* *
41695808 ACACGCCCATGTGGCCTGCCCGTGTGTCTCACATGGCCAAAA
1 ACACGCCCGTGTGGCCTGCCCATGTGTCTCACATGGCCAAAA
* *
41695850 ACACGCCCGTGTGG-CTGGCCATGTGTCTCACATGGCCAAAG
1 ACACGCCCGTGTGGCCTGCCCATGTGTCTCACATGGCCAAAA
*
41695891 ACACGTCCGTGT
1 ACACGCCCGTGT
41695903 CACAAGCCGT
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
41 35 0.73
42 13 0.27
ACGTcount: A:0.20, C:0.34, G:0.26, T:0.20
Consensus pattern (42 bp):
ACACGCCCGTGTGGCCTGCCCATGTGTCTCACATGGCCAAAA
Found at i:41701406 original size:13 final size:14
Alignment explanation
Indices: 41701372--41701407 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
41701362 ATGTTTGTGT
41701372 GAAAATTTTGTTAA
1 GAAAATTTTGTTAA
41701386 GAAAATTTTGTTAA
1 GAAAATTTTGTTAA
41701400 G-AAATTTT
1 GAAAATTTT
41701408 ATCGTTTGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 7 0.32
14 15 0.68
ACGTcount: A:0.42, C:0.00, G:0.14, T:0.44
Consensus pattern (14 bp):
GAAAATTTTGTTAA
Found at i:41706992 original size:47 final size:46
Alignment explanation
Indices: 41706883--41707007 Score: 139
Period size: 47 Copynumber: 2.7 Consensus size: 46
41706873 ATATGAGAAC
41706883 CAGTGTAAGACCATGTCTGGGACATGGCATCAGTATTGAGACGAGTG
1 CAGTGTAAGACCATGTCTGGGACAT-GCATCAGTATTGAGACGAGTG
* * *
41706930 CTAGTGTAAGA-CATGTCTGGGACATGCGTCGGCTA-TGAGATGA-TAG
1 C-AGTGTAAGACCATGTCTGGGACATGCATCAG-TATTGAGACGAGT-G
*
41706976 TCAGTGTAAGACCATGTCTGGAACATGTCATC
1 -CAGTGTAAGACCATGTCTGGGACATG-CATC
41707008 GACTCCTTAC
Statistics
Matches: 67, Mismatches: 5, Indels: 11
0.81 0.06 0.13
Matches are distributed among these distances:
45 1 0.01
46 22 0.33
47 32 0.48
48 12 0.18
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.26
Consensus pattern (46 bp):
CAGTGTAAGACCATGTCTGGGACATGCATCAGTATTGAGACGAGTG
Found at i:41708804 original size:16 final size:16
Alignment explanation
Indices: 41708783--41708814 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
41708773 AGCCATATCC
41708783 ATGTTTTGAGATAGGT
1 ATGTTTTGAGATAGGT
41708799 ATGTTTTGAGATAGGT
1 ATGTTTTGAGATAGGT
41708815 TTTTGATGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (16 bp):
ATGTTTTGAGATAGGT
Done.