Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 138 of 255
Found at i:44533453 original size:14 final size:14
Alignment explanation
Indices: 44533434--44533464 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
44533424 TTATATATAT
44533434 TTTAATTTTTTAAA
1 TTTAATTTTTTAAA
44533448 TTTAATTTTTTAAA
1 TTTAATTTTTTAAA
44533462 TTT
1 TTT
44533465 TTACTAAAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TTTAATTTTTTAAA
Found at i:44533456 original size:68 final size:69
Alignment explanation
Indices: 44533384--44533519 Score: 172
Period size: 68 Copynumber: 2.0 Consensus size: 69
44533374 TTTTTTAATG
* *
44533384 ATTTTTATAAAATTTTAC-AAATTTTAATATTTTTTACAA-TTTATATAT-ATTTTAATTTTTTA
1 ATTTTT-TAAAATTTTACTAAAGTTTAATAATTTTTACAACTTT-TAT-TGATTTTAATTTTTTA
44533446 -AATTTA
63 TAATTTA
* * *
44533452 ATTTTTTAAATTTTTACTAAAGTTTAATAATTTTTATAACTTTTATTGATTTTTATTTTTTATAA
1 ATTTTTTAAAATTTTACTAAAGTTTAATAATTTTTACAACTTTTATTGATTTTAATTTTTTATAA
44533517 TTT
66 TTT
44533520 TTTGTCACAT
Statistics
Matches: 59, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
67 11 0.19
68 40 0.68
69 8 0.14
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.61
Consensus pattern (69 bp):
ATTTTTTAAAATTTTACTAAAGTTTAATAATTTTTACAACTTTTATTGATTTTAATTTTTTATAA
TTTA
Found at i:44533520 original size:9 final size:9
Alignment explanation
Indices: 44533365--44533521 Score: 60
Period size: 9 Copynumber: 17.4 Consensus size: 9
44533355 TTTTGATGCA
44533365 TTTTATAACTT
1 TTTTATAA--T
*
44533376 TTTTAATGAT
1 TTTT-ATAAT
*
44533386 TTTTATAAAA
1 TTTTAT-AAT
*
44533396 TTTTACAAAT
1 TTTTA-TAAT
* *
44533406 TTTAATATT
1 TTTTATAAT
*
44533415 TTTTACAAT
1 TTTTATAAT
*
44533424 TTATAT-AT
1 TTTTATAAT
*
44533432 ATTT-TAAT
1 TTTTATAAT
44533440 TTTT-TAA-
1 TTTTATAAT
* *
44533447 ATTTA-ATT
1 TTTTATAAT
44533455 TTTTA-AAT
1 TTTTATAAT
*
44533463 TTTTACTAAAG
1 TTTTA-T-AAT
*
44533474 TTTAATAAT
1 TTTTATAAT
*
44533483 TTTTATAAC
1 TTTTATAAT
*
44533492 TTTTATTGAT
1 TTTTA-TAAT
44533502 TTTTAT--T
1 TTTTATAAT
44533509 TTTTATAAT
1 TTTTATAAT
44533518 TTTT
1 TTTT
44533522 TGTCACATGT
Statistics
Matches: 107, Mismatches: 27, Indels: 26
0.67 0.17 0.16
Matches are distributed among these distances:
7 12 0.11
8 23 0.21
9 34 0.32
10 25 0.23
11 10 0.09
12 3 0.03
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.62
Consensus pattern (9 bp):
TTTTATAAT
Found at i:44535974 original size:290 final size:291
Alignment explanation
Indices: 44535069--44536172 Score: 963
Period size: 293 Copynumber: 3.8 Consensus size: 291
44535059 GGTTAACCTT
* * * * * *
44535069 GTACCAACTCGGTTAGAAAATTA-CGAAAATATCCATT-CGTAATTAAAATAAATCATATCATTT
1 GTACCAACTCGGTTAGGAAATTATAGAAAATGTCC-TTCCATAATTAAAATAAATCATATTATTC
* * * * *
44535132 GAGGGCATTTTAGTCTTTTCATTTTAACAAAAACCAAGAAAAATATGCATATGGTGAGATTTGAA
65 AAAGGCATTTTAGTCTTTTTATTTTAACAAAAACCAAGAAAAATATGCATATGGTGGGATTTAAA
* * *** * *
44535197 CCCATGCCAATTGGATTAGTAAAATCTTAAATTTATCACTCAACCAATGTTTTACTTTGGTAATA
130 CCCATACCAATTGGATTAGTAAAACCTTAAATTTATCACTCAACCAAAACTTTA-TTTTG-ATTA
* *
44535262 TTTTATAC-TCTTTTAATATGCACAATTTATTATCTTCACCAGTTATATATGTATATACTTACTA
193 TTTTATACATTTTTTAATATTCACAATTTATTATCTTCACCAGTTATAT-T-T-T-TA--TACTA
** * * * *
44535326 TTAATAATACCCCAAACTGAATTGGTGTCA-CGTGTTAACTAG
252 TTAATAA-ACCCCTGATTG-AGTGGTGTCATAGT-TTAACTGG
* * * * * *
44535368 GTACCAACTCGATTAGGAAATTAT-GGAAATGTCCTTCTATAATTAAAATGAGTTATATTATTCA
1 GTACCAACTCGGTTAGGAAATTATAGAAAATGTCCTTCCATAATTAAAATAAATCATATTATTCA
* * * * *
44535432 AAGGTATTTTAATTTTTTTCATTTTAACAGAAACC------AA-ATG---AT-G-GGG-TTTCAA
66 AAGGCATTTTAGTCTTTTT-ATTTTAACAAAAACCAAGAAAAATATGCATATGGTGGGATTTAAA
* * ** * *
44535484 CCCACACCAATTTGATTAGTAAAACCTTAAATTTATCACTTGAGCAAAACTTTATTTTAATATAT
130 CCCATACCAATTGGATTAGTAAAACCTTAAATTTATCACTCAACCAAAACTTTATTTTGAT-TAT
* * * * * *
44535549 TTTATACATTCTTTTTAATATAT-ATAATTTATTATCCTCGCCAGTTGTATATCTATACTATTAA
194 TTTATACA-T-TTTTTAATAT-TCACAATTTATTATCTTCACCAGTTATATTTTTATACTATTAA
* * * *
44535613 TAAAACCTCTGATTAAGTTGGTGCCATAGGTTAACTGG
256 T-AAACCCCTGATTGAG-TGGTGTCATAGTTTAACTGG
* * *
44535651 GTACCAACTCAGTTAGGAAATTAT-GAAAATGTCCTTCCATAATAAAAATAAATCTTATTATTCA
1 GTACCAACTCGGTTAGGAAATTATAGAAAATGTCCTTCCATAATTAAAATAAATCATATTATTCA
* * *
44535715 AAGGCACTTTAGTCTTTTTA-TTTAGA-AAAAA-CAAGAAAAATATGCATGTGGTGGGAGTTAAA
66 AAGGCATTTTAGTCTTTTTATTTTA-ACAAAAACCAAGAAAAATATGCATATGGTGGGATTTAAA
* * * * * *
44535777 CTCGTGCCAATTGGATTAGTAAAACCTTAAATTTA-CAACTCAATCAAAGCTTTATTTTGATTTT
130 CCCATACCAATTGGATTAGTAAAACCTTAAATTTATC-ACTCAACCAAAACTTTATTTTGATTAT
44535841 TTTATACAATTTTTTAAATATTCACAATTTATTATCTTCACCAGTTATATTTTTATACTATTAAT
194 TTTATAC-ATTTTTT-AATATTCACAATTTATTATCTTCACCAGTTATATTTTTATACTATTAAT
*
44535906 AAACCCCTGGTTGAGTGGTGTCATAGTTTAACTGG
257 AAACCCCTGATTGAGTGGTGTCATAGTTTAACTGG
* * * * *
44535941 GTACCAACTCGGTTAGGAAAGTATAG-AAATGTCCTCCCATAATTAAAATAAGTAATACTATTCA
1 GTACCAACTCGGTTAGGAAATTATAGAAAATGTCCTTCCATAATTAAAATAAATCATATTATTCA
* ** * * * *
44536005 ATGGTGTTTTAGTCTATTTATTTTAACAAAAATCAAAGAAAAATATGCATATGGTGGTATATAAA
66 AAGGCATTTTAGTCTTTTTATTTTAACAAAAA-CCAAGAAAAATATGCATATGGTGGGATTTAAA
* * * ** * *
44536070 CCTATATCAATTGGAGTAGTAAAATATTAAATTTACCACTCAACCAAAACTTCA-TTT--TT-TT
130 CCCATACCAATTGGATTAGTAAAACCTTAAATTTATCACTCAACCAAAACTTTATTTTGATTATT
* * * * * *
44536131 TCATACATTTTCT-ATATGCACAAATTATTATCTCCACTAGTT
195 TTATACATTTTTTAATATTCACAATTTATTATCTTCACCAGTT
44536173 GTATATCTAT
Statistics
Matches: 645, Mismatches: 125, Indels: 83
0.76 0.15 0.10
Matches are distributed among these distances:
280 1 0.00
281 8 0.01
282 3 0.00
283 100 0.16
284 3 0.00
285 3 0.00
286 40 0.06
287 53 0.08
288 9 0.01
289 40 0.06
290 93 0.14
291 29 0.04
292 58 0.09
293 124 0.19
294 3 0.00
298 2 0.00
299 62 0.10
300 14 0.02
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.38
Consensus pattern (291 bp):
GTACCAACTCGGTTAGGAAATTATAGAAAATGTCCTTCCATAATTAAAATAAATCATATTATTCA
AAGGCATTTTAGTCTTTTTATTTTAACAAAAACCAAGAAAAATATGCATATGGTGGGATTTAAAC
CCATACCAATTGGATTAGTAAAACCTTAAATTTATCACTCAACCAAAACTTTATTTTGATTATTT
TATACATTTTTTAATATTCACAATTTATTATCTTCACCAGTTATATTTTTATACTATTAATAAAC
CCCTGATTGAGTGGTGTCATAGTTTAACTGG
Found at i:44536193 original size:290 final size:289
Alignment explanation
Indices: 44535602--44536172 Score: 658
Period size: 290 Copynumber: 2.0 Consensus size: 289
44535592 GTTGTATATC
*
44535602 TATACTATTAATAAAACCTCTGATTAAGTTGGTGCCATAGGTTAACTGGGTACCAACTCAGTTAG
1 TATACTATTAATAAAACCCCTGATTAAGTTGGTGCCATAGGTTAACTGGGTACCAACTCAGTTAG
* * ** * *
44535667 GAAATTATGAAAATGTCCTTCCATAATAAAAATAAATCTTATTATTCAAAGGCACTTTAGTCTTT
66 GAAAGTATGAAAATGTCCTCCCATAATAAAAATAAATAATACTATTCAAAGGCACTTTAGTCTAT
* * * *
44535732 TTATTTAGAAAAAACAAGAAAAATATGCATGTGGTGGGAGTTAAACTCGTGCCAATTGGATTAGT
131 TTATTTAGAAAAAACAAGAAAAATATGCATATGGTGGGAGTTAAACTCATACCAATTGGAGTAGT
* * * * * *
44535797 AAAACCTTAAATTTACAACTCAATCAAAGCTTTATTTTGATTTTTTTATACAATTTTTTAAATAT
196 AAAACATTAAATTTACAACTCAACCAAAACTTCA-TTT-ATTTTTTCATACAATTTTCT-AATAT
* * *
44535862 TCACAATTTATTATCTTCACCAGTTATATTTT
258 GCACAAATTATTATCTCCACCAGTTATATTTT
* * * * *
44535894 TATACTATTAAT-AAACCCCTGGTTGAG-TGGTGTCATAGTTTAACTGGGTACCAACTCGGTTAG
1 TATACTATTAATAAAACCCCTGATTAAGTTGGTGCCATAGGTTAACTGGGTACCAACTCAGTTAG
* * * ***
44535957 GAAAGTAT-AGAAATGTCCTCCCATAATTAAAATAAGTAATACTATTCAATGGTGTTTTAGTCTA
66 GAAAGTATGA-AAATGTCCTCCCATAATAAAAATAAATAATACTATTCAAAGGCACTTTAGTCTA
* *
44536021 TTTATTTTA-ACAAAAATCAAAGAAAAATATGCATATGGTGGTA-TATAAAC-CTATATCAATTG
130 TTTA-TTTAGA-AAAAA-C-AAGAAAAATATGCATATGGTGGGAGT-TAAACTC-ATACCAATTG
* *
44536083 GAGTAGTAAAATATTAAATTTACCACTCAACCAAAACTTCA-TT-TTTTTTCATAC-ATTTTCT-
189 GAGTAGTAAAACATTAAATTTACAACTCAACCAAAACTTCATTTATTTTTTCATACAATTTTCTA
*
44536144 ATATGCACAAATTATTATCTCCACTAGTT
254 ATATGCACAAATTATTATCTCCACCAGTT
44536173 GTATATCTAT
Statistics
Matches: 236, Mismatches: 36, Indels: 20
0.81 0.12 0.07
Matches are distributed among these distances:
286 25 0.11
288 6 0.03
289 11 0.05
290 88 0.37
291 23 0.10
292 15 0.06
293 68 0.29
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.37
Consensus pattern (289 bp):
TATACTATTAATAAAACCCCTGATTAAGTTGGTGCCATAGGTTAACTGGGTACCAACTCAGTTAG
GAAAGTATGAAAATGTCCTCCCATAATAAAAATAAATAATACTATTCAAAGGCACTTTAGTCTAT
TTATTTAGAAAAAACAAGAAAAATATGCATATGGTGGGAGTTAAACTCATACCAATTGGAGTAGT
AAAACATTAAATTTACAACTCAACCAAAACTTCATTTATTTTTTCATACAATTTTCTAATATGCA
CAAATTATTATCTCCACCAGTTATATTTT
Found at i:44537793 original size:16 final size:16
Alignment explanation
Indices: 44537772--44537805 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
44537762 ATCAACACGT
44537772 GTTAGTGCATTCATAC
1 GTTAGTGCATTCATAC
44537788 GTTAGTGCATTCATAC
1 GTTAGTGCATTCATAC
44537804 GT
1 GT
44537806 AATTCACGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.38
Consensus pattern (16 bp):
GTTAGTGCATTCATAC
Found at i:44540317 original size:53 final size:53
Alignment explanation
Indices: 44540135--44540341 Score: 198
Period size: 53 Copynumber: 3.8 Consensus size: 53
44540125 ATCAGGGTTT
* * * * * *
44540135 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGC
* * ** * * * *
44540189 AAGGAAATCATGTAAGACCATGTTAAGACATGGCATTGATAAACTACGATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGC
* * * * *
44540244 AAAGATCCCATGTAAGACCATACCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
* *
44540297 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
44540342 TAAAAAGGAA
Statistics
Matches: 119, Mismatches: 32, Indels: 5
0.76 0.21 0.03
Matches are distributed among these distances:
53 45 0.38
54 37 0.31
55 37 0.31
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:44546565 original size:53 final size:54
Alignment explanation
Indices: 44546436--44546577 Score: 160
Period size: 53 Copynumber: 2.6 Consensus size: 54
44546426 AGCAAATCAT
* * * * * *
44546436 GTAAGACCATGTCAAGACATGGCATTGATAAACTACGATAAGGCAAAGATCCCAT
1 GTAAGACCATGTCAAGACATGGCAATGGT-AAGTTCGATAAGGCAAAGATACCAC
* * * * * *
44546491 GTAAGACCTTGCCAAGGCATGGCAATGGTGAGTTC-TTAAGGCAAGGATACCAC
1 GTAAGACCATGTCAAGACATGGCAATGGTAAGTTCGATAAGGCAAAGATACCAC
44546544 GTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 GTAAGACCATGTCAAGACATGGCAATGGTAAGTT
44546578 GAAAAAGGAA
Statistics
Matches: 71, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
53 44 0.62
54 3 0.04
55 24 0.34
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.21
Consensus pattern (54 bp):
GTAAGACCATGTCAAGACATGGCAATGGTAAGTTCGATAAGGCAAAGATACCAC
Found at i:44549475 original size:28 final size:28
Alignment explanation
Indices: 44549439--44549527 Score: 160
Period size: 28 Copynumber: 3.1 Consensus size: 28
44549429 GGAATAGAAA
44549439 TGATAGTATAATTTTTTATAAGTGAATGG
1 TGAT-GTATAATTTTTTATAAGTGAATGG
*
44549468 TGATGTATAATTTTTTATAATTGAATGG
1 TGATGTATAATTTTTTATAAGTGAATGG
44549496 TGATGTATAATTTTTTATAAGTGAATGG
1 TGATGTATAATTTTTTATAAGTGAATGG
44549524 TGAT
1 TGAT
44549528 ATATGTACCA
Statistics
Matches: 58, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
28 54 0.93
29 4 0.07
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.47
Consensus pattern (28 bp):
TGATGTATAATTTTTTATAAGTGAATGG
Found at i:44551869 original size:15 final size:15
Alignment explanation
Indices: 44551849--44551878 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
44551839 AGAGGCTGAA
44551849 AGTTAATAACTAATT
1 AGTTAATAACTAATT
*
44551864 AGTTAATAGCTAATT
1 AGTTAATAACTAATT
44551879 GAATAAAACT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.10, T:0.40
Consensus pattern (15 bp):
AGTTAATAACTAATT
Found at i:44552878 original size:19 final size:20
Alignment explanation
Indices: 44552837--44552879 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
44552827 TTTTGTAAAG
* *
44552837 TTTGTAAAATAGATGGTATT
1 TTTGTAAAATAGATGGAAAT
*
44552857 TTTGTGAAATA-ATGGAAAT
1 TTTGTAAAATAGATGGAAAT
44552876 TTTG
1 TTTG
44552880 GGTTGCTATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.35, C:0.00, G:0.21, T:0.44
Consensus pattern (20 bp):
TTTGTAAAATAGATGGAAAT
Found at i:44553392 original size:46 final size:48
Alignment explanation
Indices: 44553321--44553584 Score: 165
Period size: 46 Copynumber: 5.6 Consensus size: 48
44553311 TATGTGTACT
*
44553321 AGTGTAAGACATGTCTGGG-CGATGCATCAGCCAC-ATAT-TGA-GAGCC
1 AGTGTAAGACATGTCTGGGAC-ATGCATCAGCCACAAGATAT-ACGAGCC
* *
44553367 AGTGTAAGATATGTCTGGGACATGCATCAGCCTCAAGATATACGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAAGATATACGAGCC
* ** * *
44553415 AGTGTAAGACATGTTTGGGACATGCATC-G--ACATTA-AGACGAGAACT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAAGATATACGAG--CC
* ** * *
44553461 AGTGTAAGACATGTTTGGGACATGCATC-G--ACATTA-AGACGAGAACT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAAGATATACGAG--CC
* * * * * * *
44553507 AATGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATATACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAAGATATACGAGCC
* * * *
44553555 AGAGTAAGACCTATCTGGGGCATGGCATCA
1 AGTGTAAGACATGTCTGGGACAT-GCATCA
44553585 ACACCGATAG
Statistics
Matches: 183, Mismatches: 24, Indels: 19
0.81 0.11 0.08
Matches are distributed among these distances:
44 6 0.03
45 3 0.02
46 104 0.57
47 7 0.04
48 51 0.28
49 7 0.04
50 5 0.03
ACGTcount: A:0.32, C:0.19, G:0.27, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCACAAGATATACGAGCC
Found at i:44553480 original size:94 final size:92
Alignment explanation
Indices: 44553367--44553535 Score: 223
Period size: 94 Copynumber: 1.8 Consensus size: 92
44553357 ATTGAGAGCC
* * * * *
44553367 AGTGTAAGATATGTCTGGGACATGCATC-AGCCTCAAGATATACGAGCCAGTGTAAGACATGTTT
1 AGTGTAAGACATGTCTGGGACATGCATCGA-CATCAAGA-AGA-GAACCAATGTAAGACATGTTT
44553431 GGGACATGCATCGACATTAAGACGAGAACT
63 GGGACATGCATCGACATTAAGACGAGAACT
* * * *
44553461 AGTGTAAGACATGTTTGGGACATGCATCGACATTAAGACGAGAACTAATGTAAGACATGTTTGGG
1 AGTGTAAGACATGTCTGGGACATGCATCGACATCAAGAAGAGAACCAATGTAAGACATGTTTGGG
44553526 ACATGCATCG
66 ACATGCATCG
44553536 GCCTCGAGAT
Statistics
Matches: 65, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
92 31 0.48
93 1 0.02
94 32 0.49
95 1 0.02
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (92 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACATCAAGAAGAGAACCAATGTAAGACATGTTTGGG
ACATGCATCGACATTAAGACGAGAACT
Found at i:44557008 original size:65 final size:66
Alignment explanation
Indices: 44556932--44557074 Score: 234
Period size: 65 Copynumber: 2.2 Consensus size: 66
44556922 TGGCCTTGCC
* * *
44556932 ATGGTCTTACACTTGTAATGTCATAATCCAGGTATGGTCTTATCAT-AGGATGCCGTAGCCCAAC
1 ATGGTCTTACACTCGTAATGTCATAACCCAGGTATGGTCTTATCATCAGGATGCCATAGCCCAAC
44556996 T
66 T
* *
44556997 ATGGTCTTACACTCGTAATGTCATAACCCAGTTATGGTCTTATCATCAGGATGCCATAGCCCAGC
1 ATGGTCTTACACTCGTAATGTCATAACCCAGGTATGGTCTTATCATCAGGATGCCATAGCCCAAC
44557062 T
66 T
44557063 ATGGTCTTACAC
1 ATGGTCTTACAC
44557075 GTATACATAT
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
65 43 0.60
66 29 0.40
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (66 bp):
ATGGTCTTACACTCGTAATGTCATAACCCAGGTATGGTCTTATCATCAGGATGCCATAGCCCAAC
T
Found at i:44557038 original size:33 final size:32
Alignment explanation
Indices: 44556932--44557074 Score: 110
Period size: 33 Copynumber: 4.4 Consensus size: 32
44556922 TGGCCTTGCC
* * * *
44556932 ATGGTCTTACACTTGTAATGTCATAATCCAGGT
1 ATGGTCTTACACTCG-AATGCCATAACCCAGCT
* * * * *
44556965 ATGGTCTTATCA-TAGGATGCCGTAGCCCAACT
1 ATGGTCTTA-CACTCGAATGCCATAACCCAGCT
* *
44556997 ATGGTCTTACACTCGTAATGTCATAACCCAGTT
1 ATGGTCTTACACTCG-AATGCCATAACCCAGCT
* *
44557030 ATGGTCTTATCA-TCAGGATGCCATAGCCCAGCT
1 ATGGTCTTA-CACTC-GAATGCCATAACCCAGCT
44557063 ATGGTCTTACAC
1 ATGGTCTTACAC
44557075 GTATACATAT
Statistics
Matches: 85, Mismatches: 19, Indels: 12
0.73 0.16 0.10
Matches are distributed among these distances:
31 2 0.02
32 23 0.27
33 55 0.65
34 5 0.06
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (32 bp):
ATGGTCTTACACTCGAATGCCATAACCCAGCT
Found at i:44569485 original size:21 final size:20
Alignment explanation
Indices: 44569456--44569495 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
44569446 CATGTATGTT
44569456 AATGATTGATGATAGATTATG
1 AATGATTGATGATAG-TTATG
*
44569477 AATGTTTGATGATAGTTAT
1 AATGATTGATGATAGTTAT
44569496 ACAAGTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.35, C:0.00, G:0.23, T:0.42
Consensus pattern (20 bp):
AATGATTGATGATAGTTATG
Found at i:44569503 original size:20 final size:21
Alignment explanation
Indices: 44569461--44569503 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
44569451 ATGTTAATGA
*
44569461 TTGATGATAGATTATGAATGT
1 TTGATGATAGATTATGAAAGT
44569482 TTGATGATAG-TTAT-ACAAGT
1 TTGATGATAGATTATGA-AAGT
44569502 TT
1 TT
44569504 TTTAAAGTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 1 0.05
20 9 0.45
21 10 0.50
ACGTcount: A:0.33, C:0.02, G:0.21, T:0.44
Consensus pattern (21 bp):
TTGATGATAGATTATGAAAGT
Found at i:44572987 original size:12 final size:12
Alignment explanation
Indices: 44572965--44572995 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
44572955 TGTGTTTTAA
44572965 TTTTG-TTTGGG
1 TTTTGTTTTGGG
44572976 TTTTGTTTTGGG
1 TTTTGTTTTGGG
44572988 TTTTGTTT
1 TTTTGTTT
44572996 AGTGTTTAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 5 0.26
12 14 0.74
ACGTcount: A:0.00, C:0.00, G:0.29, T:0.71
Consensus pattern (12 bp):
TTTTGTTTTGGG
Found at i:44573108 original size:12 final size:11
Alignment explanation
Indices: 44573083--44573122 Score: 55
Period size: 12 Copynumber: 3.5 Consensus size: 11
44573073 TGTTTATTTC
44573083 AAAAA-AAAAA
1 AAAAAGAAAAA
44573093 AAAAAGAAAAA
1 AAAAAGAAAAA
44573104 GAAAAAGAAAAA
1 -AAAAAGAAAAA
44573116 AAGAAAG
1 AA-AAAG
44573123 TAGTATTAGC
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 5 0.19
11 7 0.26
12 15 0.56
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (11 bp):
AAAAAGAAAAA
Found at i:44578938 original size:93 final size:94
Alignment explanation
Indices: 44578778--44578952 Score: 237
Period size: 93 Copynumber: 1.9 Consensus size: 94
44578768 TTAGGATTCT
* * * *
44578778 ATGTGATGGATGTGAACATGCATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAG
*
44578843 TGTATATATGTGATAAGGCCTAATAGCCG
66 TGTATAAATGTGATAAGGCCTAATAGCCG
* * * * *
44578872 ATGTGATGAATGTGAA-AGTGTATATATGTGA-AGGGCCGAGTGGCCAACGTGATGGATGTGAAA
1 ATGTGATGAATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAACGTGATGAATGTGAAA
44578935 GTGTATAAATGTGATAAG
65 GTGTATAAATGTGATAAG
44578953 TCCCGAAGGG
Statistics
Matches: 70, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
93 44 0.63
94 26 0.37
ACGTcount: A:0.33, C:0.09, G:0.31, T:0.27
Consensus pattern (94 bp):
ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAG
TGTATAAATGTGATAAGGCCTAATAGCCG
Found at i:44578941 original size:46 final size:47
Alignment explanation
Indices: 44578778--44578952 Score: 228
Period size: 47 Copynumber: 3.7 Consensus size: 47
44578768 TTAGGATTCT
* * *
44578778 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
*
44578825 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * *
44578872 ATGTGATGAATGTGAAAGTGTATATATGTGA-AGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
44578918 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
44578953 TCCCGAAGGG
Statistics
Matches: 113, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
46 39 0.35
47 74 0.65
ACGTcount: A:0.33, C:0.09, G:0.31, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:44580690 original size:40 final size:40
Alignment explanation
Indices: 44580327--44580678 Score: 481
Period size: 40 Copynumber: 8.8 Consensus size: 40
44580317 GAGAATTGAG
* *
44580327 AGTGATGTATCCGGGCTAAGTCTCAAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
44580367 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
44580407 AGTGATATGTCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
44580447 AGTGATGTATCCGGGCTAAGTTCCGAAGAGTATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
44580487 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
44580527 AGTGATGTATCCGGGTTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
44580567 AGTGATGTATCCAGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * ** *
44580607 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTTGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
44580647 GGTGTTATATCCGGGCT-AGCTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAG-TCCCGAAGAGCA
44580679 ATCATGCTGG
Statistics
Matches: 279, Mismatches: 32, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
39 1 0.00
40 278 1.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:44587583 original size:93 final size:94
Alignment explanation
Indices: 44587423--44587597 Score: 237
Period size: 93 Copynumber: 1.9 Consensus size: 94
44587413 TTAGGATTCT
* * * *
44587423 ATGTGATGGATGTGAACATGCATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAG
*
44587488 TGTATATATGTGATAAGGCCTAATAGCCG
66 TGTATAAATGTGATAAGGCCTAATAGCCG
* * * * *
44587517 ATGTGATGAATGTGAA-AGTGTATATATGTGA-AGGGCCGAGTGGCCAACGTGATGGATGTGAAA
1 ATGTGATGAATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAACGTGATGAATGTGAAA
44587580 GTGTATAAATGTGATAAG
65 GTGTATAAATGTGATAAG
44587598 TCCCGAAGGG
Statistics
Matches: 70, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
93 44 0.63
94 26 0.37
ACGTcount: A:0.33, C:0.09, G:0.31, T:0.27
Consensus pattern (94 bp):
ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAG
TGTATAAATGTGATAAGGCCTAATAGCCG
Found at i:44587586 original size:46 final size:47
Alignment explanation
Indices: 44587423--44587597 Score: 228
Period size: 47 Copynumber: 3.7 Consensus size: 47
44587413 TTAGGATTCT
* * *
44587423 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
*
44587470 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * *
44587517 ATGTGATGAATGTGAAAGTGTATATATGTGA-AGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
44587563 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
44587598 TCCCGAAGGG
Statistics
Matches: 113, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
46 39 0.35
47 74 0.65
ACGTcount: A:0.33, C:0.09, G:0.31, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:44589334 original size:40 final size:40
Alignment explanation
Indices: 44588971--44589322 Score: 481
Period size: 40 Copynumber: 8.8 Consensus size: 40
44588961 GAGAATTGAG
* *
44588971 AGTGATGTATCCGGGCTAAGTCTCAAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
44589011 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
44589051 AGTGATATGTCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
44589091 AGTGATGTATCCGGGCTAAGTTCCGAAGAGTATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
44589131 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
44589171 AGTGATGTATCCGGGTTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
44589211 AGTGATGTATCCAGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * ** *
44589251 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTTGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
44589291 GGTGTTATATCCGGGCT-AGCTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAG-TCCCGAAGAGCA
44589323 ATCATGCTGG
Statistics
Matches: 279, Mismatches: 32, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
39 1 0.00
40 278 1.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:44596143 original size:47 final size:48
Alignment explanation
Indices: 44596092--44596815 Score: 862
Period size: 47 Copynumber: 14.8 Consensus size: 48
44596082 TTAGGATTCT
* * *
44596092 ATGTGATGGATGTGAACA-TG-CATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGATATATATGTGATAAGGCCTAATGGCCG
44596139 ATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCG
*
44596186 ATGTAATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCG
*
44596235 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGTCG
1 ATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCG
44596284 ATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCG
44596331 ATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCG
44596378 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCG
44596427 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCG
* * * * **** * *
44596476 ATGTGATGAATGTTGGCCGATGTGATGAATGTGAAAGTGTATATATATTTGATAAGGCCTA
1 ATGTGATGAATG-T-G--AAAGTGAT--ATAT--ATGTG-ATA-AGGCCT-A-ATGGCC-G
*
44596537 ATG-G-TCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGAT-GA-ATG-------TGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCG
44596593 ATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCG
44596640 ATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCG
* *
44596687 ATGTGATGAATGTGAAAGTG-TATATATGTGCTAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCG
* * ** *
44596734 ATGTGATGAATGTGAAAGTG-TATATATGTGACT-GGGCCGAGGGGCCA
1 ATGTGATGAATGTGAAAGTGATATATATGTGA-TAAGGCCTAATGGCCG
* * *
44596781 ACGTGATGGATGTGAAAGTG-TATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGATATATATGTGATAAG
44596816 TCCCGAAGGG
Statistics
Matches: 603, Mismatches: 43, Indels: 62
0.85 0.06 0.09
Matches are distributed among these distances:
46 2 0.00
47 340 0.56
48 1 0.00
49 190 0.32
50 1 0.00
51 1 0.00
52 2 0.00
53 4 0.01
54 3 0.00
56 9 0.01
57 11 0.02
58 4 0.01
59 4 0.01
60 11 0.02
61 9 0.01
63 3 0.00
64 4 0.01
65 2 0.00
66 1 0.00
67 1 0.00
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (48 bp):
ATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCG
Found at i:44596494 original size:19 final size:19
Alignment explanation
Indices: 44596470--44596507 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
44596460 TAAGGCCTAA
44596470 TGGCCGATGTGATGAATGT
1 TGGCCGATGTGATGAATGT
44596489 TGGCCGATGTGATGAATGT
1 TGGCCGATGTGATGAATGT
44596508 GAAAGTGTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.11, G:0.37, T:0.32
Consensus pattern (19 bp):
TGGCCGATGTGATGAATGT
Found at i:44596502 original size:68 final size:68
Alignment explanation
Indices: 44596421--44596556 Score: 254
Period size: 68 Copynumber: 2.0 Consensus size: 68
44596411 TAAGGCCTAA
44596421 TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
44596486 TGT
66 TGT
* *
44596489 TGGCCGATGTGATGAATGTGAAAGTGTATATATATTTGATAAGGCCTAATGGTCGATGTGATGAA
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
44596554 TGT
66 TGT
44596557 GAAAGTGTAT
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 66 1.00
ACGTcount: A:0.29, C:0.08, G:0.30, T:0.32
Consensus pattern (68 bp):
TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
TGT
Found at i:44596507 original size:117 final size:117
Alignment explanation
Indices: 44596372--44596605 Score: 450
Period size: 117 Copynumber: 2.0 Consensus size: 117
44596362 TAAGGCCTAA
44596372 TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
44596437 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
66 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
44596489 TGGCCGATGTGATGAATGTGAAAGTGTATATATATTTGATAAGGCCTAATGGTCGATGTGATGAA
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
44596554 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
66 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
44596606 GAAAGTGTAT
Statistics
Matches: 115, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
117 115 1.00
ACGTcount: A:0.31, C:0.08, G:0.29, T:0.32
Consensus pattern (117 bp):
TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
Found at i:44598243 original size:32 final size:32
Alignment explanation
Indices: 44598200--44598276 Score: 100
Period size: 32 Copynumber: 2.4 Consensus size: 32
44598190 CAAAATAAAT
* *
44598200 TATGAAAAGTTACGAATGTGAAGAGGCTTGAA
1 TATGAAAAGTTACGAATGTAAAGAGACTTGAA
* **
44598232 TATGAAGAGTTAATAATGTAAAGAGACTTGAA
1 TATGAAAAGTTACGAATGTAAAGAGACTTGAA
*
44598264 GATGAAAAGTTAC
1 TATGAAAAGTTAC
44598277 ACACATGCAT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.44, C:0.05, G:0.25, T:0.26
Consensus pattern (32 bp):
TATGAAAAGTTACGAATGTAAAGAGACTTGAA
Found at i:44609231 original size:15 final size:15
Alignment explanation
Indices: 44609211--44609250 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
44609201 ACTAAACTTT
44609211 GGCATAT-ACGCCTAG
1 GGCATATGA-GCCTAG
44609226 GGCATATGAGCCTAG
1 GGCATATGAGCCTAG
44609241 GGCATATGAG
1 GGCATATGAG
44609251 TGAGAATGGT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 23 0.96
16 1 0.04
ACGTcount: A:0.28, C:0.20, G:0.33, T:0.20
Consensus pattern (15 bp):
GGCATATGAGCCTAG
Found at i:44612298 original size:5 final size:5
Alignment explanation
Indices: 44612288--44612321 Score: 59
Period size: 5 Copynumber: 6.6 Consensus size: 5
44612278 TTGTGTGTTC
44612288 TTTAT TTTAT TTTATT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTA-T TTTAT TTTAT TTTAT TTT
44612322 TCTCAATATC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 23 0.82
6 5 0.18
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:44612309 original size:16 final size:16
Alignment explanation
Indices: 44612288--44612322 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
44612278 TTGTGTGTTC
44612288 TTTATTTTATTTTATT
1 TTTATTTTATTTTATT
44612304 TTTATTTTATTTTATT
1 TTTATTTTATTTTATT
44612320 TTT
1 TTT
44612323 CTCAATATCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (16 bp):
TTTATTTTATTTTATT
Found at i:44634051 original size:80 final size:79
Alignment explanation
Indices: 44633789--44634091 Score: 385
Period size: 80 Copynumber: 3.8 Consensus size: 79
44633779 TCCTCGTTCA
* * * ** *
44633789 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGATT
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAATGCCTTCGGGACTTAACCCGGATT
44633854 TAACAACTCGCACG
66 TAACAACTCGCACG
44633868 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCAC-AATGCCTTCGGGACTTAACCCGGAT
44633933 TTAACAACTCGCACG
65 TTAACAACTCGCACG
44633948 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCAC-AATGCCTTCGGGACTTAACCCGGAT
** * *
44634013 TTAGTATCTCGCACA
65 TTAACAACTCGCACG
* ** * * * * *
44634028 AAGGCCTTC-GGATCTTAGTCCGGATATATTC-ACTTAGCACAAAGCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACAATGCCTTCGGGACTTAACCCGG
44634091 A
63 A
44634092 CAGCATTCAA
Statistics
Matches: 202, Mismatches: 18, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
79 36 0.18
80 160 0.79
81 6 0.03
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (79 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAATGCCTTCGGGACTTAACCCGGATT
TAACAACTCGCACG
Found at i:44634051 original size:120 final size:120
Alignment explanation
Indices: 44633819--44634091 Score: 381
Period size: 120 Copynumber: 2.3 Consensus size: 120
44633809 CGGTTTTAGT
*
44633819 AACTCACACAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTT
1 AACTCGCACAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTT
* * *
44633884 AACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTA-AC
66 AACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATATAC
44633938 AACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACT
1 AACTCGCAC-AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACT
** * ** *
44634003 TAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAGTCCGGATATATTC
65 TAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGA-CTTAACCCGGATATATAC
* * *
44634059 -ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AAC-TCGCACAATGCCTTCGGGACTTAACCCGGA
44634092 CAGCATTCAA
Statistics
Matches: 137, Mismatches: 13, Indels: 7
0.87 0.08 0.04
Matches are distributed among these distances:
119 11 0.08
120 120 0.88
121 6 0.04
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.23
Consensus pattern (120 bp):
AACTCGCACAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTT
AACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATATAC
Found at i:44634052 original size:40 final size:40
Alignment explanation
Indices: 44633789--44634038 Score: 394
Period size: 40 Copynumber: 6.3 Consensus size: 40
44633779 TCCTCGTTCA
* * * ** *
44633789 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
44633828 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
44633868 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
44633908 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
44633948 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
44633988 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
44634028 AAGGCCTTCGG
1 AATGCCTTCGG
44634039 ATCTTAGTCC
Statistics
Matches: 199, Mismatches: 11, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
39 33 0.17
40 166 0.83
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:44634100 original size:41 final size:41
Alignment explanation
Indices: 44634023--44634100 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
44634013 TTAGTATCTC
* * *
44634023 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
44634064 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
44634101 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:44636644 original size:27 final size:27
Alignment explanation
Indices: 44636613--44636790 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
44636603 TAAATTGTAC
44636613 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
44636640 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
44636666 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
44636694 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
44636722 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
44636749 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
44636776 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
44636791 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:44636727 original size:82 final size:81
Alignment explanation
Indices: 44636614--44636769 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
44636604 AAATTGTACA
* *
44636614 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
44636678 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
44636695 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
44636760 TGCGAGTTGA
65 TGCGAATTGA
44636770 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:44636781 original size:82 final size:81
Alignment explanation
Indices: 44636610--44636790 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
44636600 GATTAAATTG
* *
44636610 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
44636675 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
44636691 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
44636755 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
44636773 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
44636791 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:44642617 original size:43 final size:42
Alignment explanation
Indices: 44642568--44642665 Score: 119
Period size: 42 Copynumber: 2.3 Consensus size: 42
44642558 CCCTGACCTA
44642568 GTCTTACATGTAATCAAATATA-GATGC-CATTGTCCCAGACAGG
1 GTCTTACATGTAATC--ATATACGATGCTCA-TGTCCCAGACAGG
* * *
44642611 GTCTTACATGAAATCATATACGATGCTGATGTCCCAGACATG
1 GTCTTACATGTAATCATATACGATGCTCATGTCCCAGACAGG
*
44642653 GTCTTACACGTAA
1 GTCTTACATGTAA
44642666 ATTTCAAATC
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
41 5 0.10
42 28 0.58
43 15 0.31
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (42 bp):
GTCTTACATGTAATCATATACGATGCTCATGTCCCAGACAGG
Found at i:44642730 original size:43 final size:43
Alignment explanation
Indices: 44642568--44642761 Score: 196
Period size: 43 Copynumber: 4.5 Consensus size: 43
44642558 CCCTGACCTA
* ** * ** *
44642568 GTCTTACATGTAATCAAATATAGATGCCATTGTCCCAGACAG-G
1 GTCTTACATGAAATCTCATATCGATGCCAACGTCCCAGA-TGTG
** * **
44642611 GTCTTACATGAAA--TCATATACGATGCTGATGTCCCAGACATG
1 GTCTTACATGAAATCTCATAT-CGATGCCAACGTCCCAGATGTG
* * *
44642653 GTCTTACACGTAAATTTCAAATCGATGCCAACGTCCCAGATGTG
1 GTCTTACATG-AAATCTCATATCGATGCCAACGTCCCAGATGTG
*
44642697 ATCTTACATGAAATCTCATATCGATGCCAACGTCCCAGATGTG
1 GTCTTACATGAAATCTCATATCGATGCCAACGTCCCAGATGTG
44642740 GTCTTACATGAAATCTCATATC
1 GTCTTACATGAAATCTCATATC
44642762 AGAATCCTAT
Statistics
Matches: 125, Mismatches: 21, Indels: 10
0.80 0.13 0.06
Matches are distributed among these distances:
41 4 0.03
42 24 0.19
43 67 0.54
44 25 0.20
45 5 0.04
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (43 bp):
GTCTTACATGAAATCTCATATCGATGCCAACGTCCCAGATGTG
Found at i:44662200 original size:27 final size:26
Alignment explanation
Indices: 44662144--44662202 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 26
44662134 GATATATATG
* *
44662144 ATTTTAT-TAAATTAAATTTTTAATA
1 ATTTTATAAAAATAAAATTTTTAATA
44662169 ATTTTATAAAAATAAAATATTTTAA-A
1 ATTTTATAAAAATAAAAT-TTTTAATA
44662195 ACTTTTAT
1 A-TTTTAT
44662203 TGTATATAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
25 7 0.24
26 10 0.34
27 12 0.41
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (26 bp):
ATTTTATAAAAATAAAATTTTTAATA
Found at i:44664678 original size:14 final size:14
Alignment explanation
Indices: 44664620--44664685 Score: 64
Period size: 14 Copynumber: 4.6 Consensus size: 14
44664610 TTATAGTTTT
44664620 TAATTTTTTATATA
1 TAATTTTTTATATA
* *
44664634 TTAAGTTTTTTTAAAAA
1 -TAA--TTTTTTATATA
44664651 TAATTTTTTATATA
1 TAATTTTTTATATA
*
44664665 TAACTTTTT-T-TA
1 TAATTTTTTATATA
44664677 TAATTTTTT
1 TAATTTTTT
44664686 TAGATGTATA
Statistics
Matches: 43, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
12 10 0.23
13 1 0.02
14 17 0.40
15 3 0.07
16 3 0.07
17 9 0.21
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.64
Consensus pattern (14 bp):
TAATTTTTTATATA
Found at i:44664684 original size:12 final size:13
Alignment explanation
Indices: 44664620--44664687 Score: 57
Period size: 12 Copynumber: 4.8 Consensus size: 13
44664610 TTATAGTTTT
44664620 TAATTTTTTATATA
1 TAATTTTTT-TATA
*
44664634 TTAAGTTTTTTTAAAAA
1 -TAA-TTTTTTT--ATA
44664651 TAATTTTTTATATA
1 TAATTTTTT-TATA
*
44664665 TAACTTTTTT-TA
1 TAATTTTTTTATA
44664677 TAATTTTTTTA
1 TAATTTTTTTA
44664688 GATGTATAGT
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
12 11 0.25
13 1 0.02
14 10 0.23
15 10 0.23
16 10 0.23
17 2 0.05
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.63
Consensus pattern (13 bp):
TAATTTTTTTATA
Found at i:44670978 original size:16 final size:16
Alignment explanation
Indices: 44670937--44670989 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 16
44670927 TATTTATTTA
44670937 AATATTAA-ATT-ATT
1 AATATTAATATTAATT
*
44670951 ACTA-TAATTATTAATT
1 AATATTAA-TATTAATT
44670967 AATATTAATATTATATT
1 AATATTAATATTA-ATT
44670984 -ATATTA
1 AATATTA
44670990 TGAAATAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
13 3 0.09
14 3 0.09
15 3 0.09
16 17 0.53
17 6 0.19
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (16 bp):
AATATTAATATTAATT
Found at i:44672818 original size:6 final size:6
Alignment explanation
Indices: 44672807--44672833 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
44672797 ATGTGCCGAC
44672807 TACTGT TACTGT TACTGT TACTGT TAC
1 TACTGT TACTGT TACTGT TACTGT TAC
44672834 CAATTCGGCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.48
Consensus pattern (6 bp):
TACTGT
Found at i:44672987 original size:53 final size:47
Alignment explanation
Indices: 44672876--44672982 Score: 169
Period size: 47 Copynumber: 2.3 Consensus size: 47
44672866 CTGTTATCGT
* * *
44672876 TACTGTTACTGTTTCGGATTTGTTCCGATTAGGTACTCTGTGTACCG
1 TACTGTTACTGTTCCGGATTTGTTCCAATGAGGTACTCTGTGTACCG
44672923 TACTGTTACTGTTCCGGATTTGTTCCAATGAGGTACTCTGTGTACCG
1 TACTGTTACTGTTCCGGATTTGTTCCAATGAGGTACTCTGTGTACCG
* *
44672970 TATTGCTACTGTT
1 TACTGTTACTGTT
44672983 ACTGTTACTG
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 55 1.00
ACGTcount: A:0.16, C:0.20, G:0.22, T:0.42
Consensus pattern (47 bp):
TACTGTTACTGTTCCGGATTTGTTCCAATGAGGTACTCTGTGTACCG
Found at i:44673159 original size:18 final size:18
Alignment explanation
Indices: 44673110--44673195 Score: 91
Period size: 18 Copynumber: 4.7 Consensus size: 18
44673100 AAATATCAAC
* *
44673110 TGTTACTGAATAATTTAAT
1 TGTTACTGAATAA-CTGAT
*
44673129 TGTTACAGAATAACTGAT
1 TGTTACTGAATAACTGAT
* * *
44673147 TATTATTGAATAATTGAT
1 TGTTACTGAATAACTGAT
* *
44673165 TGTTACCGAATAACTGAC
1 TGTTACTGAATAACTGAT
44673183 TGTTACTGAATAA
1 TGTTACTGAATAA
44673196 ATAATCGTTC
Statistics
Matches: 54, Mismatches: 13, Indels: 1
0.79 0.19 0.01
Matches are distributed among these distances:
18 42 0.78
19 12 0.22
ACGTcount: A:0.37, C:0.09, G:0.14, T:0.40
Consensus pattern (18 bp):
TGTTACTGAATAACTGAT
Found at i:44673176 original size:36 final size:37
Alignment explanation
Indices: 44673112--44673195 Score: 116
Period size: 36 Copynumber: 2.3 Consensus size: 37
44673102 ATATCAACTG
*
44673112 TTACTGAATAATTTAATTGTTACAGAATAACTGATTA
1 TTACTGAATAATTTAATTGTTACAGAATAACTGACTA
* * * *
44673149 TTATTGAATAA-TTGATTGTTACCGAATAACTGACTG
1 TTACTGAATAATTTAATTGTTACAGAATAACTGACTA
44673185 TTACTGAATAA
1 TTACTGAATAA
44673196 ATAATCGTTC
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
36 31 0.76
37 10 0.24
ACGTcount: A:0.38, C:0.10, G:0.13, T:0.39
Consensus pattern (37 bp):
TTACTGAATAATTTAATTGTTACAGAATAACTGACTA
Found at i:44677481 original size:26 final size:26
Alignment explanation
Indices: 44677445--44677526 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
44677435 TGAAATTCCA
44677445 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
44677471 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
44677497 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
44677523 ATCA
1 ATCA
44677527 ATTTATATCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.37, C:0.27, G:0.06, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:44682744 original size:16 final size:15
Alignment explanation
Indices: 44682720--44682749 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
44682710 AACTGTTTTA
44682720 TTACAAATTTCACTC
1 TTACAAATTTCACTC
44682735 TTACATAATTTCACT
1 TTACA-AATTTCACT
44682750 TACTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:44683033 original size:49 final size:50
Alignment explanation
Indices: 44682961--44683086 Score: 146
Period size: 50 Copynumber: 2.5 Consensus size: 50
44682951 CTAGTACGCA
* ** * *
44682961 TAGTAGCCTGCACTTAGCACTACACATGCGACC-AACAATCCGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACACGACCTAACAATCCGATACACG
* * * * *
44683010 TAGTAGCCTACACTTAGTACTACACACATGACCTTACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACACGACCTAACAATCCGATACACG
*
44683060 TAGTAGCCTGCACTTAGTACGACACAC
1 TAGTAGCCTGCACTTAGTACTACACAC
44683087 GTGATTGAAG
Statistics
Matches: 64, Mismatches: 12, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
49 28 0.44
50 36 0.56
ACGTcount: A:0.31, C:0.30, G:0.16, T:0.23
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACACGACCTAACAATCCGATACACG
Found at i:44683160 original size:31 final size:31
Alignment explanation
Indices: 44683122--44683183 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
44683112 AGTAGCCTGC
* *
44683122 ACTTAGTACTACACATGCGACCTAACTATCT
1 ACTTAGTACTACACACGCGACCTAACCATCT
*
44683153 ACTTAGTACTACACACGTGACCTAACCATCT
1 ACTTAGTACTACACACGCGACCTAACCATCT
44683184 GATACACGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.32, C:0.31, G:0.10, T:0.27
Consensus pattern (31 bp):
ACTTAGTACTACACACGCGACCTAACCATCT
Found at i:44683216 original size:50 final size:48
Alignment explanation
Indices: 44683156--44683319 Score: 193
Period size: 50 Copynumber: 3.2 Consensus size: 48
44683146 ACTATCTACT
44683156 TAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCAC
1 TAGTACTACACACGTGACCTAACCATCT-ATACACGTAGTAGCCTGCAC
* * *
44683205 TCAGTACTACACATGCGACCTAACTATCTAGTACACGTAGTAGCCTGCAC
1 T-AGTACTACACACGTGACCTAACCATCTA-TACACGTAGTAGCCTGCAC
* * * *
44683255 TTAGTACTACACGCGTAACCTAAAACCATCTTAAACACATAGTAGCCTGCAC
1 -TAGTACTACACACGTGACCT--AACCATC-TATACACGTAGTAGCCTGCAC
44683307 ATAGTACTACACA
1 -TAGTACTACACA
44683320 TGTGTTCTCA
Statistics
Matches: 97, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
49 2 0.02
50 58 0.60
51 1 0.01
52 34 0.35
53 2 0.02
ACGTcount: A:0.34, C:0.29, G:0.14, T:0.23
Consensus pattern (48 bp):
TAGTACTACACACGTGACCTAACCATCTATACACGTAGTAGCCTGCAC
Found at i:44683267 original size:26 final size:26
Alignment explanation
Indices: 44683186--44683267 Score: 64
Period size: 26 Copynumber: 3.2 Consensus size: 26
44683176 AACCATCTGA
*
44683186 TACACGTAGTAGCCTGCACTCAGTAC
1 TACACGTAGTAGCCTGCACTTAGTAC
* * * * *
44683212 TACACAT-G-CGACCT-AAC-TATCTAG
1 TACACGTAGTAG-CCTGCACTTA-GTAC
44683236 TACACGTAGTAGCCTGCACTTAGTAC
1 TACACGTAGTAGCCTGCACTTAGTAC
44683262 TACACG
1 TACACG
44683268 CGTAACCTAA
Statistics
Matches: 39, Mismatches: 11, Indels: 12
0.63 0.18 0.19
Matches are distributed among these distances:
23 1 0.03
24 11 0.28
25 8 0.21
26 17 0.44
27 2 0.05
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.24
Consensus pattern (26 bp):
TACACGTAGTAGCCTGCACTTAGTAC
Found at i:44686544 original size:23 final size:23
Alignment explanation
Indices: 44686462--44686548 Score: 92
Period size: 21 Copynumber: 4.0 Consensus size: 23
44686452 CCTAATCAGT
*
44686462 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACAAAGTGCCTGAA
* *
44686484 A-ACGACACACGAGGTGCCTG--
1 ATACGACACACAAAGTGCCTGAA
* *
44686504 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCTGAA
*
44686527 ATACGACACATAAAGTGCCTGA
1 ATACGACACACAAAGTGCCTGA
44686549 TCGATAAAGC
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
20 1 0.02
21 34 0.62
22 1 0.02
23 19 0.35
ACGTcount: A:0.38, C:0.25, G:0.22, T:0.15
Consensus pattern (23 bp):
ATACGACACACAAAGTGCCTGAA
Found at i:44686943 original size:15 final size:15
Alignment explanation
Indices: 44686918--44686975 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
44686908 TCATATATAT
44686918 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
44686934 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
44686949 AATAATTTCAATCAA
1 TATAAATTCAATCAA
44686964 TATAAATTCAAT
1 TATAAATTCAAT
44686976 AAATTCATCG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
15 34 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:44695339 original size:41 final size:41
Alignment explanation
Indices: 44695280--44695482 Score: 230
Period size: 41 Copynumber: 5.0 Consensus size: 41
44695270 GGGGTTATAT
** *
44695280 GACTTTTAGCAACATTTTACCAAAAGCGCCGCTATTGCTCC
1 GACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCC
* *
44695321 GACTTTTAGTGGCGTTTTACCAAAAGCGCCGCTATTGCTCA
1 GACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCC
44695362 GACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCT-C
1 GACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCC
* * * * * *
44695402 TATTTTTAGCGGCGTTTTAACAAAAAACGCCGTTATTGCTCT
1 GACTTTTAGCGGCGTTTT-ACCAAAAGCGCCGCTATTGCTCC
* * * * * *
44695444 G-TTTTTAGTGGCGTGTTAACAAAAACACCGCTATTGCTC
1 GACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTC
44695483 TGTGTTTTAC
Statistics
Matches: 140, Mismatches: 20, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
40 34 0.24
41 106 0.76
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (41 bp):
GACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCC
Found at i:44695467 original size:81 final size:81
Alignment explanation
Indices: 44695300--44695483 Score: 226
Period size: 81 Copynumber: 2.3 Consensus size: 81
44695290 AACATTTTAC
* * * *
44695300 CAAAAGCGCCGCTATTGCTCCGACTTTTAGTGGCGTTTTACCAAAAGCGCCGCTATTGCTCAGAC
1 CAAAAGCGCCGCTATTGCT-CTACTTTTAGCGGCGTTTTACAAAAAACGCCGCTATTGCTCAGAC
* *
44695365 TTTTAGCGGCGTTTTAC
65 TTTTAGCGGCGTGTTAA
* * * *
44695382 CAAAAGCGCCGCTATTGCTCTATTTTTAGCGGCGTTTTAACAAAAAACGCCGTTATTGCTCTG-T
1 CAAAAGCGCCGCTATTGCTCTACTTTTAGCGGCGTTTT-ACAAAAAACGCCGCTATTGCTCAGAC
*
44695446 TTTTAGTGGCGTGTTAA
65 TTTTAGCGGCGTGTTAA
* *
44695463 CAAAAACACCGCTATTGCTCT
1 CAAAAGCGCCGCTATTGCTCT
44695484 GTGTTTTACA
Statistics
Matches: 88, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
81 49 0.56
82 39 0.44
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.32
Consensus pattern (81 bp):
CAAAAGCGCCGCTATTGCTCTACTTTTAGCGGCGTTTTACAAAAAACGCCGCTATTGCTCAGACT
TTTAGCGGCGTGTTAA
Found at i:44704341 original size:60 final size:62
Alignment explanation
Indices: 44704233--44704359 Score: 186
Period size: 60 Copynumber: 2.1 Consensus size: 62
44704223 ATAATAAAAC
* *
44704233 AAAAACCAAGTGGATAGAGAGAGAAAAACAATTTTTCTTCTTTTTCCTTTTTCTTTTCAAAG
1 AAAAACCAAGTAGATAAAGAGAGAAAAACAATTTTTCTTCTTTTTCCTTTTTCTTTTCAAAG
* * * *
44704295 AAAAACTAAGTAGATAAAGAGAGAAAAA-TA-TTTTGTTCTTTTTCCTTTTTCTTTTCGAAG
1 AAAAACCAAGTAGATAAAGAGAGAAAAACAATTTTTCTTCTTTTTCCTTTTTCTTTTCAAAG
44704355 AAAAA
1 AAAAA
44704360 AGAATAAGGA
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
60 33 0.56
61 1 0.02
62 25 0.42
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.37
Consensus pattern (62 bp):
AAAAACCAAGTAGATAAAGAGAGAAAAACAATTTTTCTTCTTTTTCCTTTTTCTTTTCAAAG
Found at i:44706682 original size:30 final size:31
Alignment explanation
Indices: 44706648--44706718 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 31
44706638 GGTTTCAATT
* *
44706648 CAGTCACTCA-ATTTTCGAAAAATGATAAAA
1 CAGTCACTCACATTATCGAAAAATGACAAAA
* * *
44706678 CAGTCACTAACATTATCGAAAAGTGACAAAT
1 CAGTCACTCACATTATCGAAAAATGACAAAA
*
44706709 CAGCCACTCA
1 CAGTCACTCA
44706719 TTAACATTTT
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
30 9 0.27
31 24 0.73
ACGTcount: A:0.44, C:0.23, G:0.11, T:0.23
Consensus pattern (31 bp):
CAGTCACTCACATTATCGAAAAATGACAAAA
Found at i:44708228 original size:24 final size:24
Alignment explanation
Indices: 44708191--44708243 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
44708181 AGTCATTTTC
* *
44708191 TTTTTTAGTAACCCAATTATGGAT
1 TTTTTTAGTAACCCAACTATGAAT
* *
44708215 TTTTTTTGTCACCCAACTATGAAT
1 TTTTTTAGTAACCCAACTATGAAT
44708239 TTTTT
1 TTTTT
44708244 AAAAATTTGT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.09, T:0.51
Consensus pattern (24 bp):
TTTTTTAGTAACCCAACTATGAAT
Found at i:44711437 original size:23 final size:23
Alignment explanation
Indices: 44711389--44711437 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
44711379 CCACTCAGGA
* *
44711389 AATTGAAATAATAATATACGGGC
1 AATTGAAATAATAATATACAGAC
44711412 AATTGAAATAATAATATACAGAC
1 AATTGAAATAATAATATACAGAC
44711435 AAT
1 AAT
44711438 GTTTTTAACT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.53, C:0.08, G:0.12, T:0.27
Consensus pattern (23 bp):
AATTGAAATAATAATATACAGAC
Found at i:44711842 original size:6 final size:6
Alignment explanation
Indices: 44711831--44711859 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
44711821 AAAAACTCTT
44711831 TAAAAA TAAAAA TAAAAA TAAAAA TAAAA
1 TAAAAA TAAAAA TAAAAA TAAAAA TAAAA
44711860 TGATTTTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
TAAAAA
Found at i:44712367 original size:18 final size:18
Alignment explanation
Indices: 44712344--44712403 Score: 57
Period size: 18 Copynumber: 3.2 Consensus size: 18
44712334 TTAAACAAAA
44712344 AAAAAACATAAAAGCTTT
1 AAAAAACATAAAAGCTTT
* ***
44712362 AAAAAATATAAATTTTTT
1 AAAAAACATAAAAGCTTT
*
44712380 AAAAAAGATAAAAGATCTTT
1 AAAAAACATAAAAG--CTTT
44712400 AAAA
1 AAAA
44712404 TTCAAAAATT
Statistics
Matches: 32, Mismatches: 8, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
18 25 0.78
20 7 0.22
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.28
Consensus pattern (18 bp):
AAAAAACATAAAAGCTTT
Found at i:44719448 original size:30 final size:30
Alignment explanation
Indices: 44719400--44719460 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
44719390 ATAAACGACC
* * **
44719400 GTGTCGCCTGGCCATGTGTTGCACATGGCT
1 GTGTCACCTAGCCATGTGTCACACATGGCT
*
44719430 GTGTCACCTAGCCGTGTGTCACACATGGCT
1 GTGTCACCTAGCCATGTGTCACACATGGCT
44719460 G
1 G
44719461 AGACACACAC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.13, C:0.28, G:0.31, T:0.28
Consensus pattern (30 bp):
GTGTCACCTAGCCATGTGTCACACATGGCT
Found at i:44727633 original size:55 final size:54
Alignment explanation
Indices: 44727538--44727687 Score: 149
Period size: 55 Copynumber: 2.8 Consensus size: 54
44727528 CTACTTTGTT
* ** * *
44727538 GCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAATGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATTGACCACGCG
* * * * ** *
44727592 GCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAATGTGCGAG-TTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
* *
44727647 GCACTAAATGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCG
44727688 GGCTCAATAT
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 37 0.47
55 42 0.53
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:44727650 original size:27 final size:27
Alignment explanation
Indices: 44727510--44727687 Score: 146
Period size: 27 Copynumber: 6.6 Consensus size: 27
44727500 TAAATTGTAC
44727510 AGCACTAAGTGTGCGATTCT-ACTT-TGT
1 AGCACTAAGTGTGCGATT-TGA-TTATGT
* ** *
44727537 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGATTATGT
* ** *
44727563 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGATTATGT
* * *
44727591 GGCACTAAGTGTGCGGGTTTGACTATGT
1 AGCACTAAGTGTGC-GATTTGATTATGT
*
44727619 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* * * *
44727646 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
44727673 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
44727688 GGCTCAATAT
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 97 0.80
28 22 0.18
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGATTATGT
Found at i:44727651 original size:82 final size:81
Alignment explanation
Indices: 44727511--44727666 Score: 190
Period size: 82 Copynumber: 1.9 Consensus size: 81
44727501 AAATTGTACA
* * * *
44727511 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
44727576 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
44727592 GCACTAAGTGTGCGGGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAA
1 GCACTAAGTGTGC-GATTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAA
*
44727655 TGTGCGAGTTGA
63 TGTGCGAATTGA
44727667 TTATATAGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:44729187 original size:32 final size:32
Alignment explanation
Indices: 44729071--44729189 Score: 132
Period size: 32 Copynumber: 3.7 Consensus size: 32
44729061 ATTTCATTGT
*
44729071 TACTGATGG-TTGTGTGCCGATCATATCACTGC
1 TACTGATGGCTT-TGTGCCAATCATATCACTGC
* * * * * *
44729103 TACTGATTGCTTTGTGCCAGTCATGTTACCGT
1 TACTGATGGCTTTGTGCCAATCATATCACTGC
*
44729135 TACTGATGGCTATGTGCCAATCATATCACTGC
1 TACTGATGGCTTTGTGCCAATCATATCACTGC
* *
44729167 AACTGATGGCTTTGTTCCAATCA
1 TACTGATGGCTTTGTGCCAATCA
44729190 CATTATTGTA
Statistics
Matches: 69, Mismatches: 17, Indels: 2
0.78 0.19 0.02
Matches are distributed among these distances:
32 67 0.97
33 2 0.03
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (32 bp):
TACTGATGGCTTTGTGCCAATCATATCACTGC
Found at i:44740581 original size:43 final size:41
Alignment explanation
Indices: 44740520--44740609 Score: 135
Period size: 43 Copynumber: 2.1 Consensus size: 41
44740510 CTGGCATTAC
*
44740520 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACA-AT-ACCAGCACGAA
* *
44740563 GCCTGCTAGGCACGAAGGCCCGAATATAATACCAGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACAATACCAGCACGAA
44740604 GCCTGC
1 GCCTGC
44740610 GAGATTTATC
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
41 15 0.34
42 2 0.05
43 27 0.61
ACGTcount: A:0.30, C:0.33, G:0.24, T:0.12
Consensus pattern (41 bp):
GCCTGCTAGGCACGAAGGCCCGAATACAATACCAGCACGAA
Found at i:44740631 original size:38 final size:38
Alignment explanation
Indices: 44740581--44740683 Score: 143
Period size: 38 Copynumber: 2.7 Consensus size: 38
44740571 GGCACGAAGG
* * *
44740581 CCCGAATATAATACCAGCACTAAGCCTGCGAGATTTAT
1 CCCGGATATAATACCAGCACGAAGCCTGCGAGATTTAA
*
44740619 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGAGATTTAA
** *
44740657 CCCGGATATTTTACTAGCACGAAGCCT
1 CCCGGATATAATACCAGCACGAAGCCT
44740684 ACGGGTCTTT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 58 1.00
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.22
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGAGATTTAA
Found at i:44744231 original size:33 final size:33
Alignment explanation
Indices: 44744189--44744275 Score: 120
Period size: 33 Copynumber: 2.6 Consensus size: 33
44744179 CAAATCGGTA
* * *
44744189 ACAGTCTGGGCCTGAGCCCTATTCAGTATCAGT
1 ACAGTCTGGGCCTTAGCCCTATACAGTATCAAT
44744222 ACAGTCTGGGCCTTAGCCCTATACAGTATCAAT
1 ACAGTCTGGGCCTTAGCCCTATACAGTATCAAT
* * *
44744255 GCAGACTAGGCCTTAGCCCTA
1 ACAGTCTGGGCCTTAGCCCTA
44744276 CATAGTAGTA
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 48 1.00
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.25
Consensus pattern (33 bp):
ACAGTCTGGGCCTTAGCCCTATACAGTATCAAT
Found at i:44744680 original size:27 final size:27
Alignment explanation
Indices: 44744650--44744841 Score: 194
Period size: 27 Copynumber: 7.2 Consensus size: 27
44744640 GGCAAAATCA
* *
44744650 TCATTTTACCATATAAGGGTATTACAG
1 TCATTTTACCCTATAAGGGTATTACGG
* *
44744677 TCA---TACCCTATAGGGGTATTATGG
1 TCATTTTACCCTATAAGGGTATTACGG
* * *
44744701 TCATCTTACCCTATAGGGGCATTACGG
1 TCATTTTACCCTATAAGGGTATTACGG
44744728 TCATTTTACCCTATAAGGGTATTACGG
1 TCATTTTACCCTATAAGGGTATTACGG
* * *
44744755 TCATTTAACCCTA-CAGGGATATTATGG
1 TCATTTTACCCTATAAGGG-TATTACGG
* * * *
44744782 TCATTTAACCCTACAGGGGTATTACAG
1 TCATTTTACCCTATAAGGGTATTACGG
** *
44744809 TCATTTTAAGCTACAAGGGTATTACGG
1 TCATTTTACCCTATAAGGGTATTACGG
44744836 TCATTT
1 TCATTT
44744842 CACAAATTGA
Statistics
Matches: 139, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
24 20 0.14
26 4 0.03
27 112 0.81
28 3 0.02
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (27 bp):
TCATTTTACCCTATAAGGGTATTACGG
Found at i:44744710 original size:51 final size:52
Alignment explanation
Indices: 44744650--44744758 Score: 130
Period size: 51 Copynumber: 2.1 Consensus size: 52
44744640 GGCAAAATCA
* * * *
44744650 TCATTTTACCATATAAGGGTATTACAGTCA-TACCCTATAGGGGTATTATGG
1 TCATCTTACCATATAAGGGCATTACAGTCATTACCCTATAAGGGTATTACGG
* * *
44744701 TCATCTTACCCTATAGGGGCATTACGGTCATTTTACCCTATAAGGGTATTACGG
1 TCATCTTACCATATAAGGGCATTACAGTCA--TTACCCTATAAGGGTATTACGG
44744755 TCAT
1 TCAT
44744759 TTAACCCTAC
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
51 25 0.52
54 23 0.48
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (52 bp):
TCATCTTACCATATAAGGGCATTACAGTCATTACCCTATAAGGGTATTACGG
Found at i:44744800 original size:81 final size:80
Alignment explanation
Indices: 44744650--44744841 Score: 255
Period size: 81 Copynumber: 2.4 Consensus size: 80
44744640 GGCAAAATCA
* * * *
44744650 TCATTTTACCATATAAGGGTATTACAGTCA--TACCCTATAGGGGTATTATGGTCATCTTACCCT
1 TCATTTTACCCTATAAGGGTATTACGGTCATTTACCCTACAGGGATATTATGGTCATCTTACCCT
* *
44744713 ATAGGGGCATTACGG
66 ACAGGGGCATTACAG
44744728 TCATTTTACCCTATAAGGGTATTACGGTCATTTAACCCTACAGGGATATTATGGTCAT-TTAACC
1 TCATTTTACCCTATAAGGGTATTACGGTCATTT-ACCCTACAGGGATATTATGGTCATCTT-ACC
*
44744792 CTACAGGGGTATTACAG
64 CTACAGGGGCATTACAG
** *
44744809 TCATTTTAAGCTACAAGGGTATTACGGTCATTT
1 TCATTTTACCCTATAAGGGTATTACGGTCATTT
44744842 CACAAATTGA
Statistics
Matches: 100, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
78 28 0.28
80 3 0.03
81 69 0.69
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (80 bp):
TCATTTTACCCTATAAGGGTATTACGGTCATTTACCCTACAGGGATATTATGGTCATCTTACCCT
ACAGGGGCATTACAG
Found at i:44744854 original size:27 final size:27
Alignment explanation
Indices: 44744824--44744909 Score: 100
Period size: 27 Copynumber: 3.2 Consensus size: 27
44744814 TTAAGCTACA
* *
44744824 AGGGTATTACGGTCATTTCACAAATTG
1 AGGGTATTTCGGTAATTTCACAAATTG
* **
44744851 AGGGTATTTCGGTAATTTTACAACCTG
1 AGGGTATTTCGGTAATTTCACAAATTG
**
44744878 AGGGTATTTCAATAATTTCACAAATTG
1 AGGGTATTTCGGTAATTTCACAAATTG
*
44744905 GGGGT
1 AGGGT
44744910 TTTAGCGACC
Statistics
Matches: 48, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.35
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTCACAAATTG
Found at i:44747660 original size:14 final size:14
Alignment explanation
Indices: 44747641--44747670 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
44747631 CATTCCGAAG
44747641 TATATATATATACA
1 TATATATATATACA
44747655 TATATATATATACA
1 TATATATATATACA
44747669 TA
1 TA
44747671 AGTATGCCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (14 bp):
TATATATATATACA
Found at i:44748182 original size:27 final size:27
Alignment explanation
Indices: 44748151--44748328 Score: 207
Period size: 27 Copynumber: 6.6 Consensus size: 27
44748141 TGAATTGTAC
44748151 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
44748178 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
44748204 ATGCACTAAGTGTGCGAATTGACCATG-
1 A-GCACTAAGTGTGCGATTTGACTATGT
44748231 AGGCACTAAGTGTGCGAGTTTGACTATGT
1 A-GCACTAAGTGTGCGA-TTTGACTATGT
* *
44748260 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
44748287 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
44748314 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
44748329 GACTCAATAT
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 107 0.82
28 23 0.18
29 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:44748265 original size:82 final size:81
Alignment explanation
Indices: 44748152--44748307 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
44748142 GAATTGTACA
* *
44748152 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
44748216 TGCGAATTGACCATGAG
65 TGCGAATTGACCATGAG
** *
44748233 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
44748298 TGCGAGTTGA
65 TGCGAATTGA
44748308 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGAG
Found at i:44755469 original size:27 final size:27
Alignment explanation
Indices: 44755435--44755612 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
44755425 TTAATTGTAC
44755435 AGCACTAAGTGTGCGATTTGAATATGT
1 AGCACTAAGTGTGCGATTTGAATATGT
* **
44755462 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGAATATGT
* ** *
44755488 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGAATATGT
* *
44755516 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGAATATGT
* *
44755544 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGAATATGT
* * *
44755571 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGAATATGT
*
44755598 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
44755613 GACTCAATAT
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 107 0.82
28 23 0.18
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGAATATGT
Found at i:44755549 original size:82 final size:81
Alignment explanation
Indices: 44755436--44755591 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
44755426 TAATTGTACA
* *
44755436 GCACTAAGTGTGCGATTTGAATATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGAATATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
44755500 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
44755517 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGAATATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
44755582 TGCGAGTTGA
65 TGCGAATTGA
44755592 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGAATATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:44755603 original size:82 final size:81
Alignment explanation
Indices: 44755432--44755612 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
44755422 GGATTAATTG
* *
44755432 TACAGCACTAAGTGTGCGATTTGAATATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGAATATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
44755497 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
44755513 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGAATATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
44755577 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
44755595 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
44755613 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGAATATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:44759668 original size:46 final size:45
Alignment explanation
Indices: 44759610--44759838 Score: 278
Period size: 46 Copynumber: 5.0 Consensus size: 45
44759600 AGTGTGCTCT
44759610 CTGATAGAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATAG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
44759656 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATA-GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
44759702 CTGATATGAAATGTTTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATA-GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ** ** * *
44759748 GTGACGGGGAAATGAATAAGACCTTGGTTGAATGATACCATGGCAAC
1 CTGA--TAGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
44759795 ATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATAG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
44759839 TCATGTCGAA
Statistics
Matches: 162, Mismatches: 17, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
45 1 0.01
46 122 0.75
47 39 0.24
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.22
Consensus pattern (45 bp):
CTGATAGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:44759807 original size:93 final size:92
Alignment explanation
Indices: 44759615--44759838 Score: 288
Period size: 93 Copynumber: 2.4 Consensus size: 92
44759605 GCTCTCTGAT
* * **
44759615 AGAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCAT
1 AGAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGAGGAAATGAATAAGACCAT
* *
44759680 GGTTGAAAGATACCATGGCAACCTGAT
66 GGTTGAAAGATACCATGGCAACATGAC
* * *
44759707 ATG-AAATGTTTAAGACCATGGTTGAAAGATACCATGGCAACGTGACGGGGAAATGAATAAGACC
1 A-GAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA-GAGGAAATGAATAAGACC
* *
44759771 TTGGTTGAATGATACCATGGCAACATGAC
64 ATGGTTGAAAGATACCATGGCAACATGAC
* * * *
44759800 AGAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 AGAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
44759839 TCATGTCGAA
Statistics
Matches: 113, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
92 42 0.37
93 71 0.63
ACGTcount: A:0.39, C:0.15, G:0.25, T:0.22
Consensus pattern (92 bp):
AGAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGAGGAAATGAATAAGACCAT
GGTTGAAAGATACCATGGCAACATGAC
Found at i:44760620 original size:16 final size:16
Alignment explanation
Indices: 44760596--44760635 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
44760586 CTTCGCCAAA
44760596 CTTCCAATCCAACGAG
1 CTTCCAATCCAACGAG
*
44760612 CTTCTAATCCAACGAG
1 CTTCCAATCCAACGAG
44760628 CTTCCAAT
1 CTTCCAAT
44760636 TTACTATAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.30, C:0.35, G:0.10, T:0.25
Consensus pattern (16 bp):
CTTCCAATCCAACGAG
Found at i:44762055 original size:38 final size:38
Alignment explanation
Indices: 44762012--44762087 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
44762002 ACATTCAAGT
*
44762012 GGACTCAATTTACAACCTAGGCAAAATTACCATTTTGC
1 GGACTCAATTTACAACCTAGGAAAAATTACCATTTTGC
44762050 GGACTCAATTTACAACCTAGGAAAAATTACCATTTTGC
1 GGACTCAATTTACAACCTAGGAAAAATTACCATTTTGC
44762088 CCCTAACTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.36, C:0.22, G:0.13, T:0.29
Consensus pattern (38 bp):
GGACTCAATTTACAACCTAGGAAAAATTACCATTTTGC
Found at i:44766854 original size:51 final size:51
Alignment explanation
Indices: 44766789--44766888 Score: 137
Period size: 51 Copynumber: 2.0 Consensus size: 51
44766779 CTACCTTATA
* *
44766789 ACATGTAACACATCCATAATGAACTCGGACCTCTCAACAAGCTCGGATGTT
1 ACATGTAACACATCCATAATGAACTCCGACCACTCAACAAGCTCGGATGTT
* * * **
44766840 ACATGTATCGCATCCATTATGAACTCCGACCACTCAACGGGCTCGGATG
1 ACATGTAACACATCCATAATGAACTCCGACCACTCAACAAGCTCGGATG
44766889 CTCGCATCCA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
51 42 1.00
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (51 bp):
ACATGTAACACATCCATAATGAACTCCGACCACTCAACAAGCTCGGATGTT
Found at i:44767016 original size:43 final size:42
Alignment explanation
Indices: 44766910--44767016 Score: 117
Period size: 43 Copynumber: 2.5 Consensus size: 42
44766900 AATGAACTTG
* ** **
44766910 GACCACTC-ATGAGCTAAGATGCTACATATATCACGAACTTG
1 GACCACTCAATGAGCTCAGATTTTACATATATCACGAACTCA
** * *
44766951 GACCACTCAACAAGTTCGGATTTTCACATATATCACGAACTCA
1 GACCACTCAATGAGCTCAGATTTT-ACATATATCACGAACTCA
44766994 GACCACTCAATGAGCTCAGATTT
1 GACCACTCAATGAGCTCAGATTT
44767017 CTTAATTCCT
Statistics
Matches: 51, Mismatches: 13, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
41 8 0.16
42 8 0.16
43 35 0.69
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (42 bp):
GACCACTCAATGAGCTCAGATTTTACATATATCACGAACTCA
Found at i:44768633 original size:63 final size:62
Alignment explanation
Indices: 44768522--44768644 Score: 201
Period size: 63 Copynumber: 2.0 Consensus size: 62
44768512 AGTCACTTGA
* *
44768522 ATCACACATTAGTTCAAATGGTAGATCCAGTCTGGTGCAGTGACTATAGGTGTTTTAGTTGC
1 ATCACACATTAGTTCAAATGGCAGATCCAGTCTGGTGCAGTGACTATAGGTGTTGTAGTTGC
**
44768584 ATCACACATTAGTTCAAATGGCAGAGTTTAGTCTGGTGCAGTGACTATAGGTGTTGTAGTT
1 ATCACACATTAGTTCAAATGGCAGA-TCCAGTCTGGTGCAGTGACTATAGGTGTTGTAGTT
44768645 AATTGTTCTT
Statistics
Matches: 56, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
62 24 0.43
63 32 0.57
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (62 bp):
ATCACACATTAGTTCAAATGGCAGATCCAGTCTGGTGCAGTGACTATAGGTGTTGTAGTTGC
Found at i:44776573 original size:48 final size:47
Alignment explanation
Indices: 44776518--44776839 Score: 254
Period size: 46 Copynumber: 6.8 Consensus size: 47
44776508 CGGCCACATT
* * *
44776518 ATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGTATTGAG
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC-GTATCGAG
* *
44776566 ATGAGAGCTAGTGTAAGA-CATGTCTAGGACAT-GCATCGGTCTCGAG
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC-GTATCGAG
44776612 ATGTA-AGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-CGAG
1 ATG-AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC-G-TATCGAG
* * * * * *
44776658 ATGTG-TC-AGTGTAAGATCATGTCTGGGACATGGCATCGACATGGAT
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCG-TATCGAG
* *
44776704 ATGTGAGAGCTAGTGTAAGACCATGTCTAGGACATGGC-TCG-ACCTCGAT
1 A--TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGTA--TCGAG
* * * **
44776753 TTCGATAGTTAGTGTAAGACCATGTCTGGGACATGGCATCG-A-CTTG
1 AT-GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGTATCGAG
* * *
44776799 ATAGATGAGCCAGTGTAAGACCATATTTGGGACATGGCATC
1 AT-GA-GAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
44776840 AGCATTATAC
Statistics
Matches: 226, Mismatches: 33, Indels: 31
0.78 0.11 0.11
Matches are distributed among these distances:
44 9 0.04
45 17 0.08
46 66 0.29
47 46 0.20
48 51 0.23
49 12 0.05
50 25 0.11
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGTATCGAG
Found at i:44776621 original size:46 final size:48
Alignment explanation
Indices: 44776481--44776793 Score: 240
Period size: 46 Copynumber: 6.6 Consensus size: 48
44776471 TTTGTGTGCC
* * * *
44776481 AGTGTAAGA-CATGTCTAGGACATGCATCGGCCAC-ATTATG-AGAGCC
1 AGTGTAAGACCATGTCTAGGACATGCATCGGTCTCGA-GATGTAGAGCT
* * * * *
44776527 AGTGTAAGACCATGTTTGGGACATGGCATCAGTATTGAGATG-AGAGCT
1 AGTGTAAGACCATGTCTAGGACAT-GCATCGGTCTCGAGATGTAGAGCT
44776575 AGTGTAAGA-CATGTCTAGGACATGCATCGGTCTCGAGATGTA-AGCT
1 AGTGTAAGACCATGTCTAGGACATGCATCGGTCTCGAGATGTAGAGCT
* *
44776621 AGTGTAAGA-CATGTCTGGGACATGCATCGG-CTACGAGATGT-G-TC-
1 AGTGTAAGACCATGTCTAGGACATGCATCGGTCT-CGAGATGTAGAGCT
* * * * *
44776665 AGTGTAAGATCATGTCTGGGACATGGCATC-GACATGGATATGTGAGAGCT
1 AGTGTAAGACCATGTCTAGGACAT-GCATCGGTC-TCGAGATGT-AGAGCT
** ** * *
44776715 AGTGTAAGACCATGTCTAGGACATGGC-TCGACCTCGATTTCG-ATAGTT
1 AGTGTAAGACCATGTCTAGGACAT-GCATCGGTCTCGAGAT-GTAGAGCT
*
44776763 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGACCATGTCTAGGACAT-GCATCG
44776794 ACTTGATAGA
Statistics
Matches: 222, Mismatches: 28, Indels: 31
0.79 0.10 0.11
Matches are distributed among these distances:
44 9 0.04
45 18 0.08
46 76 0.34
47 26 0.12
48 54 0.24
49 12 0.05
50 27 0.12
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTAGGACATGCATCGGTCTCGAGATGTAGAGCT
Found at i:44788295 original size:19 final size:19
Alignment explanation
Indices: 44788227--44788299 Score: 65
Period size: 20 Copynumber: 3.7 Consensus size: 19
44788217 TAACGATTTT
* *
44788227 CATTTGAAATATTGGTATC
1 CATTAGAAATTTTGGTATC
* *
44788246 GCATTAAAAATTTTGGTATTT
1 -CATTAGAAATTTTGGTA-TC
** *
44788267 GGTGAGAAATTTTGGTATC
1 CATTAGAAATTTTGGTATC
44788286 CATTAGAAATTTTG
1 CATTAGAAATTTTG
44788300 ATATGCCAAA
Statistics
Matches: 40, Mismatches: 12, Indels: 3
0.73 0.22 0.05
Matches are distributed among these distances:
19 12 0.30
20 27 0.68
21 1 0.03
ACGTcount: A:0.32, C:0.07, G:0.19, T:0.42
Consensus pattern (19 bp):
CATTAGAAATTTTGGTATC
Found at i:44788896 original size:19 final size:17
Alignment explanation
Indices: 44788874--44788943 Score: 54
Period size: 19 Copynumber: 3.9 Consensus size: 17
44788864 TTAAATTTGA
44788874 TATAAACTTATAAAAATAT
1 TATAAA-TTATAAAAAT-T
* *
44788893 TATAAATCTA-ATAAATC
1 TATAAAT-TATAAAAATT
44788910 TA-AAATTTATAAAAATT
1 TATAAA-TTATAAAAATT
44788927 TATAAAATTAATAAAAA
1 TAT-AAATT-ATAAAAA
44788944 CTAATAATAC
Statistics
Matches: 41, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
16 5 0.12
17 10 0.24
18 8 0.20
19 18 0.44
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (17 bp):
TATAAATTATAAAAATT
Found at i:44788926 original size:10 final size:10
Alignment explanation
Indices: 44788911--44788943 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
44788901 TAATAAATCT
44788911 AAAATTTATA
1 AAAATTTATA
44788921 AAAATTTAT-
1 AAAATTTATA
*
44788930 AAAATTAATA
1 AAAATTTATA
44788940 AAAA
1 AAAA
44788944 CTAATAATAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 8 0.38
10 13 0.62
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (10 bp):
AAAATTTATA
Found at i:44788950 original size:19 final size:19
Alignment explanation
Indices: 44788910--44788950 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
44788900 CTAATAAATC
* * *
44788910 TAAAATTTATAAAAATTTA
1 TAAAATTAATAAAAACTAA
44788929 TAAAATTAATAAAAACTAA
1 TAAAATTAATAAAAACTAA
44788948 TAA
1 TAA
44788951 TACTCTAGAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.34
Consensus pattern (19 bp):
TAAAATTAATAAAAACTAA
Found at i:44789235 original size:14 final size:13
Alignment explanation
Indices: 44789216--44789253 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
44789206 ATCTAATGTT
44789216 TAATTATATTAGGA
1 TAATTAT-TTAGGA
*
44789230 TAATTATTAAGGA
1 TAATTATTTAGGA
44789243 TAATTATTTAG
1 TAATTATTTAG
44789254 ATTTAAATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 15 0.68
14 7 0.32
ACGTcount: A:0.42, C:0.00, G:0.13, T:0.45
Consensus pattern (13 bp):
TAATTATTTAGGA
Found at i:44789282 original size:10 final size:10
Alignment explanation
Indices: 44789267--44789326 Score: 68
Period size: 10 Copynumber: 6.0 Consensus size: 10
44789257 TAAATTTAGG
*
44789267 ATTTATTTTT
1 ATTTATCTTT
44789277 ATTTATCTTT
1 ATTTATCTTT
*
44789287 AATTATCTTT
1 ATTTATCTTT
* *
44789297 AATTGTCTTT
1 ATTTATCTTT
44789307 ATTTAT-TTGT
1 ATTTATCTT-T
44789317 ATTTATCTTT
1 ATTTATCTTT
44789327 TAGAATTTAA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
9 2 0.05
10 39 0.91
11 2 0.05
ACGTcount: A:0.22, C:0.07, G:0.03, T:0.68
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:44793016 original size:12 final size:12
Alignment explanation
Indices: 44793001--44793044 Score: 54
Period size: 12 Copynumber: 3.6 Consensus size: 12
44792991 TATTTTCTTT
44793001 TTTATTTATTAC
1 TTTATTTATTAC
*
44793013 TTTATTTTATT-T
1 TTTA-TTTATTAC
44793025 TATTATTTATTAC
1 T-TTATTTATTAC
44793038 TTTATTT
1 TTTATTT
44793045 GGATATTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
12 17 0.63
13 10 0.37
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.73
Consensus pattern (12 bp):
TTTATTTATTAC
Found at i:44793020 original size:17 final size:17
Alignment explanation
Indices: 44793000--44793035 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
44792990 CTATTTTCTT
44793000 TTTTA-TTTATTACTTTA
1 TTTTATTTTATTA-TTTA
44793017 TTTTATTTTATTATTTA
1 TTTTATTTTATTATTTA
44793034 TT
1 TT
44793036 ACTTTATTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.75
Consensus pattern (17 bp):
TTTTATTTTATTATTTA
Found at i:44793036 original size:25 final size:24
Alignment explanation
Indices: 44792971--44793044 Score: 94
Period size: 25 Copynumber: 2.9 Consensus size: 24
44792961 TTGATTTTGA
*
44792971 TTTTTATTTATTTTACTTACTATTTTCT
1 TTTTTATTTA--TTACTT--TATTTTAT
44792999 TTTTTATTTATTACTTTATTTTAT
1 TTTTTATTTATTACTTTATTTTAT
44793023 TTTATTATTTATTACTTTATTT
1 TTT-TTATTTATTACTTTATTT
44793045 GGATATTAAT
Statistics
Matches: 44, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
24 10 0.23
25 18 0.41
26 6 0.14
28 10 0.23
ACGTcount: A:0.20, C:0.07, G:0.00, T:0.73
Consensus pattern (24 bp):
TTTTTATTTATTACTTTATTTTAT
Found at i:44794309 original size:10 final size:10
Alignment explanation
Indices: 44794296--44794332 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
44794286 AAATTAAATT
44794296 AAAAAAAGAA
1 AAAAAAAGAA
* *
44794306 AAAAAGAGGA
1 AAAAAAAGAA
44794316 AAAAAAAGAA
1 AAAAAAAGAA
44794326 AAAAAAA
1 AAAAAAA
44794333 AAGACATATT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (10 bp):
AAAAAAAGAA
Found at i:44794940 original size:14 final size:14
Alignment explanation
Indices: 44794903--44794940 Score: 53
Period size: 13 Copynumber: 2.8 Consensus size: 14
44794893 ATTTAATGTT
44794903 TAATTATATT-AGGA
1 TAATTAT-TTAAGGA
44794917 TAATTA-TTAAGGA
1 TAATTATTTAAGGA
44794930 TAATTATTTAA
1 TAATTATTTAA
44794941 TTTAAATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 2 0.09
13 10 0.45
14 10 0.45
ACGTcount: A:0.45, C:0.00, G:0.11, T:0.45
Consensus pattern (14 bp):
TAATTATTTAAGGA
Found at i:44794968 original size:10 final size:10
Alignment explanation
Indices: 44794953--44795004 Score: 59
Period size: 10 Copynumber: 5.1 Consensus size: 10
44794943 TAAATTTAGG
44794953 ATTTATTTTT
1 ATTTATTTTT
*
44794963 ATTTATCTTT
1 ATTTATTTTT
* *
44794973 AATTATCTTT
1 ATTTATTTTT
*
44794983 ATTTATTTGT
1 ATTTATTTTT
44794993 ATTTATCTTTT
1 ATTTAT-TTTT
44795004 A
1 A
44795005 GAATTTAATT
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
10 31 0.89
11 4 0.11
ACGTcount: A:0.23, C:0.06, G:0.02, T:0.69
Consensus pattern (10 bp):
ATTTATTTTT
Found at i:44796411 original size:17 final size:18
Alignment explanation
Indices: 44796383--44796416 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
44796373 TATTCTCCAT
44796383 TTTAATTTTCGCAATTTA
1 TTTAATTTTCGCAATTTA
44796401 TTTAA-TTTCGCAATTT
1 TTTAATTTTCGCAATTT
44796417 CAATTCAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.26, C:0.12, G:0.06, T:0.56
Consensus pattern (18 bp):
TTTAATTTTCGCAATTTA
Found at i:44796697 original size:20 final size:20
Alignment explanation
Indices: 44796674--44796720 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
44796664 TAAAAAAAAA
*
44796674 TTAAAAACGTATAAAATTTC
1 TTAAAAACGTATAAAAATTC
* *
44796694 TTAAGAACTTATAAAAATTC
1 TTAAAAACGTATAAAAATTC
*
44796714 ATAAAAA
1 TTAAAAA
44796721 AATAAAAAAT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.55, C:0.09, G:0.04, T:0.32
Consensus pattern (20 bp):
TTAAAAACGTATAAAAATTC
Found at i:44796719 original size:10 final size:9
Alignment explanation
Indices: 44796703--44796776 Score: 69
Period size: 10 Copynumber: 7.9 Consensus size: 9
44796693 CTTAAGAACT
*
44796703 TATAAAAAT
1 TATAAAAAA
44796712 TCATAAAAAA
1 T-ATAAAAAA
44796722 -ATAAAAAA
1 TATAAAAAA
* *
44796730 TATTAAAAT
1 TATAAAAAA
*
44796739 TGATATAAAA
1 T-ATAAAAAA
44796749 TATTAAAAAA
1 TA-TAAAAAA
44796759 TATAAAAAA
1 TATAAAAAA
44796768 TCATAAAAA
1 T-ATAAAAA
44796777 TTTGAACTAG
Statistics
Matches: 53, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
8 8 0.15
9 17 0.32
10 28 0.53
ACGTcount: A:0.69, C:0.03, G:0.01, T:0.27
Consensus pattern (9 bp):
TATAAAAAA
Found at i:44796774 original size:19 final size:18
Alignment explanation
Indices: 44796703--44796776 Score: 69
Period size: 19 Copynumber: 3.9 Consensus size: 18
44796693 CTTAAGAACT
*
44796703 TATAAAAATTCATAAAAAA
1 TATAAAAAAT-ATAAAAAA
* *
44796722 -ATAAAAAATATTAAAAT
1 TATAAAAAATATAAAAAA
*
44796739 TGATATAAAATATTAAAAAA
1 T-ATAAAAAATA-TAAAAAA
44796759 TATAAAAAATCATAAAAA
1 TATAAAAAAT-ATAAAAA
44796777 TTTGAACTAG
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
17 6 0.14
18 8 0.18
19 23 0.52
20 7 0.16
ACGTcount: A:0.69, C:0.03, G:0.01, T:0.27
Consensus pattern (18 bp):
TATAAAAAATATAAAAAA
Found at i:44797429 original size:20 final size:21
Alignment explanation
Indices: 44797398--44797446 Score: 64
Period size: 20 Copynumber: 2.3 Consensus size: 21
44797388 GAGAATTTTT
44797398 ATATTATTTATAAGTATTTATA
1 ATATT-TTTATAAGTATTTATA
* *
44797420 A-ATTTTTATAAGTTTTTGTA
1 ATATTTTTATAAGTATTTATA
44797440 ATATTTT
1 ATATTTT
44797447 AAATATATCT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 15 0.62
21 8 0.33
22 1 0.04
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.59
Consensus pattern (21 bp):
ATATTTTTATAAGTATTTATA
Found at i:44797561 original size:19 final size:19
Alignment explanation
Indices: 44797534--44797586 Score: 67
Period size: 17 Copynumber: 2.9 Consensus size: 19
44797524 ATGATTTTTT
* *
44797534 TAATATTTTTTAATA-TT-
1 TAATAATTTTTATTATTTC
44797551 TAATAATTTTTATTATTTC
1 TAATAATTTTTATTATTTC
44797570 TAATAATTTTTA-TATTT
1 TAATAATTTTTATTATTT
44797587 TTCTTTTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
17 13 0.41
18 7 0.22
19 12 0.38
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (19 bp):
TAATAATTTTTATTATTTC
Found at i:44797728 original size:10 final size:10
Alignment explanation
Indices: 44797715--44797741 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
44797705 TATTTACAAG
44797715 TTTTTATTAT
1 TTTTTATTAT
44797725 TTTTTATTAT
1 TTTTTATTAT
44797735 TTTTTAT
1 TTTTTAT
44797742 AAGTTTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (10 bp):
TTTTTATTAT
Found at i:44797752 original size:20 final size:21
Alignment explanation
Indices: 44797715--44797758 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
44797705 TATTTACAAG
* * *
44797715 TTTTTATTATTTTTTATT-AT
1 TTTTTATAAGTTTATATTGAT
44797735 TTTTTATAAGTTTATATTGAT
1 TTTTTATAAGTTTATATTGAT
44797756 TTT
1 TTT
44797759 AAGTTTTAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 15 0.75
21 5 0.25
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.73
Consensus pattern (21 bp):
TTTTTATAAGTTTATATTGAT
Found at i:44798308 original size:24 final size:24
Alignment explanation
Indices: 44798281--44798332 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
44798271 TTAGTAAGTC
*
44798281 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
44798305 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
44798329 AAAT
1 AAAT
44798333 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:44800279 original size:24 final size:24
Alignment explanation
Indices: 44800252--44800303 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
44800242 TTAGTAAGTC
44800252 AAATAAACTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
* *
44800276 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
44800300 AAAT
1 AAAT
44800304 CTTCTAGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.58, C:0.10, G:0.00, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:44804921 original size:22 final size:22
Alignment explanation
Indices: 44804895--44804936 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
44804885 AAAATGTCAT
*
44804895 AAAATTATCATTTAATTCTTCA
1 AAAATTATCATTTAAGTCTTCA
*
44804917 AAAATTTTCATTTAAGTCTT
1 AAAATTATCATTTAAGTCTT
44804937 TGGGTTGTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.38, C:0.12, G:0.02, T:0.48
Consensus pattern (22 bp):
AAAATTATCATTTAAGTCTTCA
Found at i:44806660 original size:6 final size:6
Alignment explanation
Indices: 44806649--44806673 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
44806639 ATTGATAATA
44806649 ATTTTT ATTTTT ATTTTT ATTTTT A
1 ATTTTT ATTTTT ATTTTT ATTTTT A
44806674 AAATATTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (6 bp):
ATTTTT
Found at i:44806770 original size:22 final size:22
Alignment explanation
Indices: 44806745--44806788 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
44806735 TAGTCATATA
44806745 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
44806767 ATAATTTATTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
44806789 TATTTAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:44806826 original size:13 final size:14
Alignment explanation
Indices: 44806808--44806849 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
44806798 TTTTATTTTT
44806808 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
44806821 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
44806836 ATTTTAAATAATAT
1 ATTTT-AATAATAT
44806850 TATTCACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:44806834 original size:16 final size:16
Alignment explanation
Indices: 44806812--44806848 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
44806802 ATTTTTATTT
44806812 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
44806829 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
44806844 TAATA
1 TAATA
44806849 TTATTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Done.