Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 140 of 255
Found at i:45169668 original size:41 final size:41
Alignment explanation
Indices: 45169623--45169708 Score: 172
Period size: 41 Copynumber: 2.1 Consensus size: 41
45169613 AAGCTTAAAT
45169623 GCTTACTCTGTGTTAATTTTTGTGTTTATAGTGAATCAGAA
1 GCTTACTCTGTGTTAATTTTTGTGTTTATAGTGAATCAGAA
45169664 GCTTACTCTGTGTTAATTTTTGTGTTTATAGTGAATCAGAA
1 GCTTACTCTGTGTTAATTTTTGTGTTTATAGTGAATCAGAA
45169705 GCTT
1 GCTT
45169709 GTTTTGGCTG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 45 1.00
ACGTcount: A:0.23, C:0.10, G:0.20, T:0.47
Consensus pattern (41 bp):
GCTTACTCTGTGTTAATTTTTGTGTTTATAGTGAATCAGAA
Found at i:45178041 original size:47 final size:47
Alignment explanation
Indices: 45177987--45178294 Score: 510
Period size: 47 Copynumber: 6.5 Consensus size: 47
45177977 TATTTGAATA
*
45177987 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
45178034 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
45178083 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
45178130 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
45178177 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * *
45178224 AATGTGAAAGTGTATATATGTGACAGGGCC-AAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAA-TGGCCGATGTGATG
* *
45178271 GATGTGAAAGTGTATAAATGTGAT
1 AATGTGAAAGTGTATATATGTGAT
45178295 GAGTCCCGAA
Statistics
Matches: 248, Mismatches: 10, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
46 2 0.01
47 200 0.81
49 46 0.19
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:45202370 original size:29 final size:29
Alignment explanation
Indices: 45202338--45202431 Score: 170
Period size: 29 Copynumber: 3.2 Consensus size: 29
45202328 CCGCACGCTT
45202338 GTGTGCTAGGCCAACCATGCCACACACCC
1 GTGTGCTAGGCCAACCATGCCACACACCC
*
45202367 GTGTGCTAGGCCGACCATGCCACACACCC
1 GTGTGCTAGGCCAACCATGCCACACACCC
*
45202396 GTGTGCTAGGTCAACCATGCCACACACCC
1 GTGTGCTAGGCCAACCATGCCACACACCC
45202425 GTGTGCT
1 GTGTGCT
45202432 TGGTTGTGTG
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 62 1.00
ACGTcount: A:0.21, C:0.38, G:0.23, T:0.17
Consensus pattern (29 bp):
GTGTGCTAGGCCAACCATGCCACACACCC
Found at i:45205293 original size:23 final size:24
Alignment explanation
Indices: 45205239--45205295 Score: 64
Period size: 23 Copynumber: 2.5 Consensus size: 24
45205229 TTTTCTTGAA
45205239 AAATTAATTTGGAAAATCTAAGTC
1 AAATTAATTTGGAAAATCTAAGTC
* * * *
45205263 AGA-CAATTTGGAAAATC-AATTG
1 AAATTAATTTGGAAAATCTAAGTC
45205285 AAATTAATTTG
1 AAATTAATTTG
45205296 ATATTTTTGG
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
22 5 0.19
23 19 0.73
24 2 0.08
ACGTcount: A:0.46, C:0.07, G:0.14, T:0.33
Consensus pattern (24 bp):
AAATTAATTTGGAAAATCTAAGTC
Found at i:45205596 original size:21 final size:21
Alignment explanation
Indices: 45205570--45205618 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
45205560 AGTGCTAATG
45205570 GCTGCGATGGCGACACTGGTA
1 GCTGCGATGGCGACACTGGTA
* * *
45205591 GCTGCGATGGTGGCACTGGTG
1 GCTGCGATGGCGACACTGGTA
45205612 GCTGCGA
1 GCTGCGA
45205619 CGATGATGTC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.14, C:0.22, G:0.43, T:0.20
Consensus pattern (21 bp):
GCTGCGATGGCGACACTGGTA
Found at i:45209231 original size:43 final size:43
Alignment explanation
Indices: 45209155--45209278 Score: 151
Period size: 43 Copynumber: 2.9 Consensus size: 43
45209145 TCTGAACTCA
* * *
45209155 TTCACTGGCATT-TCGCCTACTAGGCTTGAAGCCCGATATCAT
1 TTCACCGGCATTATAGCCTACTAGGCCTGAAGCCCGATATCAT
* * *
45209197 TTCACCGGCATTATAGCCTGCTAGGCCTGGAGCCCGATATTAT
1 TTCACCGGCATTATAGCCTACTAGGCCTGAAGCCCGATATCAT
* * * *
45209240 CTCACCGGTATTATTGCCTACTAGGCCCGAAGCCCGATA
1 TTCACCGGCATTATAGCCTACTAGGCCTGAAGCCCGATA
45209279 ATATTATTCA
Statistics
Matches: 69, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
42 11 0.16
43 58 0.84
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (43 bp):
TTCACCGGCATTATAGCCTACTAGGCCTGAAGCCCGATATCAT
Found at i:45211012 original size:14 final size:15
Alignment explanation
Indices: 45210983--45211012 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
45210973 CAAAATTTAG
45210983 ACATGATACTTTCAC
1 ACATGATACTTTCAC
45210998 ACATGATAC-TTCAC
1 ACATGATACTTTCAC
45211012 A
1 A
45211013 TATAATAACC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (15 bp):
ACATGATACTTTCAC
Found at i:45215512 original size:43 final size:43
Alignment explanation
Indices: 45215472--45215568 Score: 149
Period size: 43 Copynumber: 2.3 Consensus size: 43
45215462 TATTAGGCTT
* *
45215472 GAAACCCGATATCATTTCACCGGCATTATAGCCTGCTAGGCCC
1 GAAACCCGATATCATCTCACCAGCATTATAGCCTGCTAGGCCC
* *
45215515 GAAGCCCGATATTATCTCACCAGCATTATAGCCTGCTAGGCCC
1 GAAACCCGATATCATCTCACCAGCATTATAGCCTGCTAGGCCC
*
45215558 GAAGCCCGATA
1 GAAACCCGATA
45215569 ATATTATTCA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 50 1.00
ACGTcount: A:0.27, C:0.32, G:0.20, T:0.22
Consensus pattern (43 bp):
GAAACCCGATATCATCTCACCAGCATTATAGCCTGCTAGGCCC
Found at i:45220248 original size:28 final size:29
Alignment explanation
Indices: 45220198--45220252 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 29
45220188 ATAGGGATTT
45220198 TCACACGGCCAAGCACACGCCCGTGTCCC
1 TCACACGGCCAAGCACACGCCCGTGTCCC
**
45220227 TCACACGGCTTAG-ACACGCCCGTGTC
1 TCACACGGCCAAGCACACGCCCGTGTC
45220253 ATCCCCTGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 13 0.54
29 11 0.46
ACGTcount: A:0.20, C:0.44, G:0.22, T:0.15
Consensus pattern (29 bp):
TCACACGGCCAAGCACACGCCCGTGTCCC
Found at i:45228302 original size:40 final size:41
Alignment explanation
Indices: 45228247--45228340 Score: 118
Period size: 41 Copynumber: 2.3 Consensus size: 41
45228237 TTGTAATAGT
* *
45228247 TCAAACGAAAAGGTTGAAAAGGAT-ATATGCAAAAAGGATA
1 TCAAATGAAAAGGTTGAAAAGGATGATATACAAAAAGGATA
* * * *
45228287 TCAAATGAAAAGGTTGAAAATGATGTTCTACATAAAGGATA
1 TCAAATGAAAAGGTTGAAAAGGATGATATACAAAAAGGATA
*
45228328 ACAAATGAAAAGG
1 TCAAATGAAAAGG
45228341 ATGTATTTGA
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
40 22 0.48
41 24 0.52
ACGTcount: A:0.51, C:0.07, G:0.21, T:0.20
Consensus pattern (41 bp):
TCAAATGAAAAGGTTGAAAAGGATGATATACAAAAAGGATA
Found at i:45230467 original size:23 final size:23
Alignment explanation
Indices: 45230423--45230471 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
45230413 TTCTAAAGAC
*
45230423 TGTTTAAAAATAATTTAATTTTAT
1 TGTTTAAAAATAATATAATTTT-T
* *
45230447 TGTTT-AAAATTATATATTTTTT
1 TGTTTAAAAATAATATAATTTTT
45230469 TGT
1 TGT
45230472 ATGATGTTGC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 4 0.18
23 13 0.59
24 5 0.23
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.59
Consensus pattern (23 bp):
TGTTTAAAAATAATATAATTTTT
Found at i:45230519 original size:20 final size:20
Alignment explanation
Indices: 45230494--45230536 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
45230484 ACCATATTCT
*
45230494 ATTTTTA-AAATTTAAAATTA
1 ATTTTTAGAAAATT-AAATTA
45230514 ATTTTTAGAAAATTAAATTA
1 ATTTTTAGAAAATTAAATTA
45230534 ATT
1 ATT
45230537 AGAAGTATCC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 16 0.76
21 5 0.24
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (20 bp):
ATTTTTAGAAAATTAAATTA
Found at i:45230861 original size:13 final size:13
Alignment explanation
Indices: 45230843--45230883 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
45230833 TAATTATTTC
45230843 AGAAAAAAGTAAA
1 AGAAAAAAGTAAA
45230856 AGAAAAAGAG-AAA
1 AGAAAAA-AGTAAA
*
45230869 AGTAAAAAGTAAA
1 AGAAAAAAGTAAA
45230882 AG
1 AG
45230884 GTAAATAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
12 2 0.08
13 21 0.84
14 2 0.08
ACGTcount: A:0.73, C:0.00, G:0.20, T:0.07
Consensus pattern (13 bp):
AGAAAAAAGTAAA
Found at i:45230903 original size:11 final size:12
Alignment explanation
Indices: 45230848--45230911 Score: 51
Period size: 12 Copynumber: 5.3 Consensus size: 12
45230838 ATTTCAGAAA
*
45230848 AAAGTAAAAGAA
1 AAAGTAAAAGAT
* *
45230860 AAAGAGAAAAGTAA
1 AAAG-TAAAAG-AT
*
45230874 AAAGTAAAAGGT
1 AAAGTAAAAGAT
45230886 AAA-TAAAA-AT
1 AAAGTAAAAGAT
*
45230896 AAAGTAAAAGAG
1 AAAGTAAAAGAT
45230908 AAAG
1 AAAG
45230912 GTCTATTTTC
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
10 4 0.10
11 10 0.24
12 12 0.29
13 10 0.24
14 6 0.14
ACGTcount: A:0.70, C:0.00, G:0.19, T:0.11
Consensus pattern (12 bp):
AAAGTAAAAGAT
Found at i:45234455 original size:12 final size:13
Alignment explanation
Indices: 45234438--45234471 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
45234428 ACTCAATAAA
45234438 TAAATAATATTT-
1 TAAATAATATTTC
45234450 TAAATAA-ATTTC
1 TAAATAATATTTC
45234462 TAAATAATAT
1 TAAATAATAT
45234472 AAAACTCCAG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 4 0.20
12 14 0.70
13 2 0.10
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (13 bp):
TAAATAATATTTC
Found at i:45246005 original size:47 final size:46
Alignment explanation
Indices: 45245848--45246112 Score: 208
Period size: 47 Copynumber: 5.7 Consensus size: 46
45245838 GTTATTGTGG
* * * *
45245848 GCTAGTGTAAGA-CTTGTCTGGGACCTGG-ATCAGCCAC-ATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-G-CACGA-GATGATA
* * * * * *
45245894 GCTAGTGTAAGGCCCTGTCTGGGACATAGAATCGGCATCGAGACGGGT-
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-GCA-CGAGA-TGATA
*
45245942 GCTAGTGTAAGA-CATGTTTGGGACAT-GCATCGTCTACGAGATGATA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCG-C-ACGAGATGATA
*
45245988 G-TCAGTGTAAGACCATGTCTGGGACATGGCATCG-ACGTGA-GATA
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGCACGAGATGATA
*
45246032 GGAACTAGTGTAAGACCATGTCTGGGACATGGCATCGACATGAGAT-ATGA
1 -G--CTAGTGTAAGACCATGTCTGGGACATGGCATCG-CACGAGATGAT-A
*
45246082 GCTAGTGTAAGACCGTGTCTGGGACATGGCA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCA
45246113 CCGGTACCTT
Statistics
Matches: 180, Mismatches: 20, Indels: 37
0.76 0.08 0.16
Matches are distributed among these distances:
44 4 0.02
45 10 0.06
46 31 0.17
47 101 0.56
48 24 0.13
49 9 0.05
50 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGCACGAGATGATA
Found at i:45246109 original size:94 final size:95
Alignment explanation
Indices: 45245849--45246112 Score: 256
Period size: 94 Copynumber: 2.8 Consensus size: 95
45245839 TTATTGTGGG
* * * * * * *
45245849 CTAGTGTAAGACTTGTCTGGGACCTGGATC-AGCCAC-ATTATGA-GAGCTAGTGTAAGGCCCTG
1 CTAGTGTAAGACATGTCTGGGACATGCATCGA-CTACGA-GATGATGAGCTAGTGTAAGACCATG
* * * * **
45245911 TCTGGGACATAGAATCGGCATCGAGACGGGTG
64 TCTGGGACATGGCATCGACATCGAGACAGGAA
* *
45245943 CTAGTGTAAGACATGTTTGGGACATGCATCGTCTACGAGATGAT-AG-TCAGTGTAAGACCATGT
1 CTAGTGTAAGACATGTCTGGGACATGCATCGACTACGAGATGATGAGCT-AGTGTAAGACCATGT
* *
45246006 CTGGGACATGGCATCGACGT-GAGATAGGAA
65 CTGGGACATGGCATCGACATCGAGACAGGAA
* *
45246036 CTAGTGTAAGACCATGTCTGGGACATGGCATCGAC-ATGAGAT-ATGAGCTAGTGTAAGACCGTG
1 CTAGTGTAAGA-CATGTCTGGGACAT-GCATCGACTACGAGATGATGAGCTAGTGTAAGACCATG
45246099 TCTGGGACATGGCA
64 TCTGGGACATGGCA
45246113 CCGGTACCTT
Statistics
Matches: 141, Mismatches: 21, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
93 20 0.14
94 112 0.79
95 9 0.06
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (95 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCGACTACGAGATGATGAGCTAGTGTAAGACCATGTC
TGGGACATGGCATCGACATCGAGACAGGAA
Found at i:45250590 original size:8 final size:8
Alignment explanation
Indices: 45250567--45250615 Score: 57
Period size: 9 Copynumber: 6.0 Consensus size: 8
45250557 TTAATATATT
45250567 TATTAAAC
1 TATTAAAC
45250575 TAATTAAAC
1 T-ATTAAAC
45250584 TATTAAACC
1 TATTAAA-C
45250593 TA--AAAC
1 TATTAAAC
45250599 TATTTAAAC
1 TA-TTAAAC
45250608 TATTAAAC
1 TATTAAAC
45250616 CTAAATTAAC
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
6 3 0.08
7 3 0.08
8 13 0.36
9 17 0.47
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (8 bp):
TATTAAAC
Found at i:45250605 original size:24 final size:24
Alignment explanation
Indices: 45250571--45250620 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
45250561 TATATTTATT
45250571 AAACTAATTAAACTATTAAACCTA
1 AAACTAATTAAACTATTAAACCTA
*
45250595 AAACTATTTAAACTATTAAACCTA
1 AAACTAATTAAACTATTAAACCTA
45250619 AA
1 AA
45250621 TTAACCTTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.54, C:0.16, G:0.00, T:0.30
Consensus pattern (24 bp):
AAACTAATTAAACTATTAAACCTA
Found at i:45259683 original size:17 final size:17
Alignment explanation
Indices: 45259661--45259697 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
45259651 ATAAATGACG
*
45259661 TTTTTAAAATTAATAAC
1 TTTTTAAAATGAATAAC
*
45259678 TTTTTAATATGAATAAC
1 TTTTTAAAATGAATAAC
45259695 TTT
1 TTT
45259698 GTGACAATGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.41, C:0.05, G:0.03, T:0.51
Consensus pattern (17 bp):
TTTTTAAAATGAATAAC
Found at i:45282554 original size:10 final size:10
Alignment explanation
Indices: 45282539--45282563 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
45282529 TATTTCATAC
45282539 AAATATTCAT
1 AAATATTCAT
45282549 AAATATTCAT
1 AAATATTCAT
45282559 AAATA
1 AAATA
45282564 CTACATTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (10 bp):
AAATATTCAT
Found at i:45289133 original size:4 final size:4
Alignment explanation
Indices: 45289124--45289148 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
45289114 AATTTTTGAG
45289124 TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT T
45289149 TTACTTTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:45305363 original size:46 final size:46
Alignment explanation
Indices: 45305313--45305485 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
45305303 TGGTTGAGCA
45305313 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
45305359 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
45305404 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
45305452 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
45305486 GGGGCGTGTT
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:45305469 original size:93 final size:93
Alignment explanation
Indices: 45305310--45305480 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
45305300 GGATGGTTGA
* *
45305310 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
45305375 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
45305403 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
45305468 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
45305481 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:45305746 original size:19 final size:20
Alignment explanation
Indices: 45305709--45305746 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
45305699 ATAAGGTGGT
45305709 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
45305729 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
45305747 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:45312907 original size:46 final size:45
Alignment explanation
Indices: 45312857--45313027 Score: 197
Period size: 46 Copynumber: 3.8 Consensus size: 45
45312847 TGGTTGAGCA
45312857 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
45312903 TCCGAACTCGTTGAGTTGAGT-CGAGTTC-GTGAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATG-GA-T-GCGAAG
*
45312948 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
45312994 CCCGATCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
45313028 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 32 0.31
46 62 0.60
47 4 0.04
48 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:45313009 original size:91 final size:92
Alignment explanation
Indices: 45312854--45313022 Score: 295
Period size: 91 Copynumber: 1.8 Consensus size: 92
45312844 GGATGGTTGA
* *
45312854 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
45312919 TGAGT-CGAGTTCGTGAATGTAACTAG
66 TGAGTCCGAGTTCGTGAATGTAACTAG
* *
45312945 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGATCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
45313010 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
45313023 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
91 66 0.90
92 7 0.10
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAATGTAACTAG
Found at i:45313285 original size:19 final size:20
Alignment explanation
Indices: 45313248--45313285 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
45313238 ATAAGGTGGT
45313248 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
45313268 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
45313286 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:45317250 original size:21 final size:21
Alignment explanation
Indices: 45317207--45317250 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
45317197 ATTGTCAATA
* *
45317207 ACAAAATGTTCACACAAAGAG
1 ACAAAATGTTCACAAAAACAG
**
45317228 ACAAAATGTTCTGAAAAACAG
1 ACAAAATGTTCACAAAAACAG
45317249 AC
1 AC
45317251 GTATATTCAG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.52, C:0.18, G:0.14, T:0.16
Consensus pattern (21 bp):
ACAAAATGTTCACAAAAACAG
Found at i:45317914 original size:20 final size:20
Alignment explanation
Indices: 45317889--45317927 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
45317879 AGTGTCTAGG
45317889 CCATGTCGAGGCCTACACGC
1 CCATGTCGAGGCCTACACGC
*
45317909 CCATGTGGAGGCCTACACG
1 CCATGTCGAGGCCTACACG
45317928 ATTATGTGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.21, C:0.36, G:0.28, T:0.15
Consensus pattern (20 bp):
CCATGTCGAGGCCTACACGC
Found at i:45317934 original size:20 final size:20
Alignment explanation
Indices: 45317889--45317939 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
45317879 AGTGTCTAGG
* *
45317889 CCATGTCGAGGCCTACACGC
1 CCATGTGGAGGCCTACACGA
45317909 CCATGTGGAGGCCTACACGA
1 CCATGTGGAGGCCTACACGA
**
45317929 TTATGTGGAGG
1 CCATGTGGAGG
45317940 AGACACACGC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.22, C:0.27, G:0.31, T:0.20
Consensus pattern (20 bp):
CCATGTGGAGGCCTACACGA
Found at i:45319080 original size:16 final size:17
Alignment explanation
Indices: 45319049--45319081 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
45319039 TTCATAAGTA
45319049 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
45319066 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
45319082 GCACCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:45319428 original size:46 final size:46
Alignment explanation
Indices: 45319361--45319588 Score: 282
Period size: 46 Copynumber: 5.0 Consensus size: 46
45319351 TTATCTTTGA
* * * *
45319361 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCACTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATGT
* * *
45319407 CATGTTGCCATGGTATTTTTCAACCATGGTCTTACACATTTCGTGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* * **
45319453 CACT-CTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGT
1 CA-TGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* *
45319499 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
*
45319545 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTA-TACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACT-CATTTCAT
45319589 ATCAGAGAGC
Statistics
Matches: 161, Mismatches: 17, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
45 6 0.04
46 154 0.96
47 1 0.01
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
Found at i:45345748 original size:44 final size:44
Alignment explanation
Indices: 45345605--45345765 Score: 172
Period size: 44 Copynumber: 3.7 Consensus size: 44
45345595 GGTTGAGCAT
* *
45345605 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCA-TTATGGATGCAACGC
* * *
45345650 CCGAACTCGTTGAGTTG-GTCCGAGTTC---GTGGATGTACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCATTATGGATG--CAACGC
45345692 ATCC-AACTCGTTGAGTTGAGTCCG-GTTCATTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCATTATGGATGC-AACGC
*
45345737 CCGAGCTCGTTGAGTTGAGTCCGAGTTCA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCA
45345766 CTTAGGGGCG
Statistics
Matches: 97, Mismatches: 8, Indels: 22
0.76 0.06 0.17
Matches are distributed among these distances:
40 6 0.06
42 3 0.03
43 20 0.21
44 37 0.38
45 25 0.26
46 6 0.06
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (44 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCATTATGGATGCAACGC
Found at i:45345759 original size:88 final size:89
Alignment explanation
Indices: 45345601--45345764 Score: 262
Period size: 88 Copynumber: 1.9 Consensus size: 89
45345591 GGATGGTTGA
* *
45345601 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAATGTCCGAACTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGCCCGAACTCGTTGAGTT
45345666 GGTCCGAGTTCGTGGATGTACTAG
66 GGTCCGAGTTCGTGGATGTACTAG
*
45345690 GCATCC-AACTCGTTGAGTTGAGTCCG-GTTCA-TTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AACGCCCGAACTCGTTGAGT
45345752 TGAGTCCGAGTTC
65 TG-GTCCGAGTTC
45345765 ACTTAGGGGC
Statistics
Matches: 70, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
86 10 0.14
87 24 0.34
88 30 0.43
89 6 0.09
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (89 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGCCCGAACTCGTTGAGTT
GGTCCGAGTTCGTGGATGTACTAG
Found at i:45346020 original size:19 final size:20
Alignment explanation
Indices: 45345983--45346020 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
45345973 ATAAGGTGGT
45345983 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
45346003 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
45346021 TGGTGTACCA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:45353132 original size:46 final size:46
Alignment explanation
Indices: 45353082--45353254 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
45353072 TGGTTGAGCA
45353082 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
45353128 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
45353173 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
45353221 CCCGATCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
45353255 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 60 0.57
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:45353238 original size:93 final size:93
Alignment explanation
Indices: 45353079--45353249 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
45353069 GGATGGTTGA
* *
45353079 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
45353144 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
45353172 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGATCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
45353237 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
45353250 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:45353515 original size:19 final size:20
Alignment explanation
Indices: 45353478--45353515 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
45353468 ATAAGGTGGT
45353478 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
45353498 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
45353516 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:45357493 original size:21 final size:21
Alignment explanation
Indices: 45357450--45357493 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
45357440 ATTGTCAATA
* *
45357450 ACAAAATGTTCACACAAAGAG
1 ACAAAATGTTCACAAAAACAG
**
45357471 ACAAAATGTTCTGAAAAACAG
1 ACAAAATGTTCACAAAAACAG
45357492 AC
1 AC
45357494 GTATATTCAG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.52, C:0.18, G:0.14, T:0.16
Consensus pattern (21 bp):
ACAAAATGTTCACAAAAACAG
Found at i:45358158 original size:20 final size:20
Alignment explanation
Indices: 45358133--45358171 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
45358123 AGTGTCTAGG
45358133 CCATGTCGAGGCCTACACGC
1 CCATGTCGAGGCCTACACGC
*
45358153 CCATGTGGAGGCCTACACG
1 CCATGTCGAGGCCTACACG
45358172 ATTATGTGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.21, C:0.36, G:0.28, T:0.15
Consensus pattern (20 bp):
CCATGTCGAGGCCTACACGC
Found at i:45358178 original size:20 final size:20
Alignment explanation
Indices: 45358133--45358183 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
45358123 AGTGTCTAGG
* *
45358133 CCATGTCGAGGCCTACACGC
1 CCATGTGGAGGCCTACACGA
45358153 CCATGTGGAGGCCTACACGA
1 CCATGTGGAGGCCTACACGA
**
45358173 TTATGTGGAGG
1 CCATGTGGAGG
45358184 AGACACACGC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.22, C:0.27, G:0.31, T:0.20
Consensus pattern (20 bp):
CCATGTGGAGGCCTACACGA
Found at i:45359328 original size:16 final size:17
Alignment explanation
Indices: 45359297--45359329 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
45359287 TTCATAAGTA
45359297 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
45359314 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
45359330 GCACCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:45359676 original size:46 final size:46
Alignment explanation
Indices: 45359609--45359836 Score: 282
Period size: 46 Copynumber: 5.0 Consensus size: 46
45359599 TTATCTTTGA
* * * *
45359609 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCACTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATGT
* * *
45359655 CATGTTGCCATGGTATTTTTCAACCATGGTCTTACACATTTCGTGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* * **
45359701 CACT-CTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGT
1 CA-TGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* *
45359747 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
*
45359793 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTA-TACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACT-CATTTCAT
45359837 ATCAGAGAGC
Statistics
Matches: 161, Mismatches: 17, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
45 6 0.04
46 154 0.96
47 1 0.01
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
Found at i:45367447 original size:288 final size:288
Alignment explanation
Indices: 45366931--45367486 Score: 810
Period size: 288 Copynumber: 1.9 Consensus size: 288
45366921 AGCCTCCACT
* * * *
45366931 CCATATACTTGCTCTGGAAGACGTTACTAAAATATTCCCAAGTGATCTAATCAAGCTTAATACCC
1 CCATATACTTGCTCTGGAAGACATTACTAAAATATTCCCAAATGACCTAATCAAGCTGAATACCC
** * * **
45366996 TCCTCAATGGTCAGCCACCACTGGTAAGCTTCATCGCAAAGCAACGACATTGCACTTTTTAATTT
66 TCCTCAATGGTCAGCCACCACAAGTAAGCTTCATCACAAAGCAACGACACTGCACCCTTTAATTT
* * *
45367061 CTTCTTAAAAGTACAGTCGATATCATTCATAATCCTCTCTGTGGCCTCCAACCAATATTCAGCCA
131 CTGCTCAAAAGTACAGTCGATATCATTCATAATCCTCTCTGTGACCTCCAACCAATATTCAGCCA
*
45367126 CAATCGAGGCGACCCTAGTAACACCCCTAAACAGCTCAGCACCGTTGGACCGAAGTTA-TTTAGT
196 CAATCGAGGCGACCCCAGTAACACCCCTAAACAGCTCAGCACCGTTGGACCGAAG-TAGTTTAGT
45367190 TATCGACCCACGGCTCCCAGTAACACCCC
260 TATCGACCCACGGCTCCCAGTAACACCCC
* *
45367219 CCATATACTTGCTCTGGAAGACATT-CTTAAAATATTCCCAAATGACCTAATCAGGCTGAGTACC
1 CCATATACTTGCTCTGGAAGACATTAC-TAAAATATTCCCAAATGACCTAATCAAGCTGAATACC
* * *
45367283 CTCCTCAATTGTCAGCCACCACAAGTAAGCTTCATCACACAGCAGCGACACTGCACCCTTTAATT
65 CTCCTCAATGGTCAGCCACCACAAGTAAGCTTCATCACAAAGCAACGACACTGCACCCTTTAATT
** ** * *
45367348 TCTGCTCAGGAGTGTAGTCGATATCATTCATAATTCTCTCTGTGACCTCCAACCAATATTCGGCC
130 TCTGCTCAAAAGTACAGTCGATATCATTCATAATCCTCTCTGTGACCTCCAACCAATATTCAGCC
* * * *
45367413 ACAATCGGGGCGACCCCAGTAACACCCCTAAACAGCTCAGCACTGTTGGATCGGAGTAGTTTAGT
195 ACAATCGAGGCGACCCCAGTAACACCCCTAAACAGCTCAGCACCGTTGGACCGAAGTAGTTTAGT
*
45367478 TATTGACCC
260 TATCGACCC
45367487 TTGGATCCCA
Statistics
Matches: 236, Mismatches: 30, Indels: 4
0.87 0.11 0.01
Matches are distributed among these distances:
287 3 0.01
288 233 0.99
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (288 bp):
CCATATACTTGCTCTGGAAGACATTACTAAAATATTCCCAAATGACCTAATCAAGCTGAATACCC
TCCTCAATGGTCAGCCACCACAAGTAAGCTTCATCACAAAGCAACGACACTGCACCCTTTAATTT
CTGCTCAAAAGTACAGTCGATATCATTCATAATCCTCTCTGTGACCTCCAACCAATATTCAGCCA
CAATCGAGGCGACCCCAGTAACACCCCTAAACAGCTCAGCACCGTTGGACCGAAGTAGTTTAGTT
ATCGACCCACGGCTCCCAGTAACACCCC
Found at i:45376376 original size:39 final size:37
Alignment explanation
Indices: 45376333--45376406 Score: 103
Period size: 39 Copynumber: 1.9 Consensus size: 37
45376323 TGAAATTCCA
* *
45376333 ATCAAAACTTTTAATTCTATTTTATTTTATTTTTTTCAG
1 ATCAAAACTTTTAATACT-GTTT-TTTTATTTTTTTCAG
*
45376372 ATCAAAATTTTTAATACTGTTTTTTTATTTTTTTC
1 ATCAAAACTTTTAATACTGTTTTTTTATTTTTTTC
45376407 TAGGTACGCA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
37 13 0.41
38 3 0.09
39 16 0.50
ACGTcount: A:0.27, C:0.09, G:0.03, T:0.61
Consensus pattern (37 bp):
ATCAAAACTTTTAATACTGTTTTTTTATTTTTTTCAG
Found at i:45378332 original size:49 final size:49
Alignment explanation
Indices: 45378273--45378509 Score: 282
Period size: 49 Copynumber: 4.8 Consensus size: 49
45378263 GTAGCCAAAG
* *
45378273 TTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 TTATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
* *
45378322 TTATCCGGTACACGA-AGTAGCCTGGACTTAGTACTACACATGTGACCTAA
1 TTATCCGGTACAC-ATAGTAGCCTGCACTTAGTACTACACATGCGACC-AA
** * * * * *
45378372 CCAT-CTG-ACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAA
1 TTATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA
*
45378420 GTTATCGGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 -TTATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
* * *
45378470 TTATCTGGTACACGTAGTACCCTGCACTTAGTACTACACA
1 TTATCCGGTACACATAGTAGCCTGCACTTAGTACTACACA
45378510 CGTGACCTCA
Statistics
Matches: 159, Mismatches: 22, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
48 34 0.21
49 83 0.52
50 9 0.06
51 33 0.21
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.26
Consensus pattern (49 bp):
TTATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
Found at i:45378450 original size:99 final size:98
Alignment explanation
Indices: 45378275--45378516 Score: 328
Period size: 99 Copynumber: 2.5 Consensus size: 98
45378265 AGCCAAAGTT
* * * *
45378275 ATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGAAGT
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACGAAGT
* *
45378340 AGCCTGGACTTAGTACTACACATGTGACCTAACC
66 AGCCTGCACTTAGTACTACACATGCGACC-AACC
* *
45378374 ATCT-G-ACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACAC-AT
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCGGTACACGA-
**
45378436 AGTAGCCTGCACTTAGTACTACACATGCGACCAATT
63 AGTAGCCTGCACTTAGTACTACACATGCGACCAACC
*
45378472 ATCTGGTACACGTAGTACCCTGCACTTAGTACTACACACGTGACC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
45378517 TCACAATAGA
Statistics
Matches: 126, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
97 32 0.25
98 11 0.09
99 48 0.38
100 35 0.28
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (98 bp):
ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACGAAGT
AGCCTGCACTTAGTACTACACATGCGACCAACC
Found at i:45384190 original size:15 final size:15
Alignment explanation
Indices: 45384167--45384206 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
45384157 CAAGCCCAGA
45384167 ATAAGGAAATCCAAG
1 ATAAGGAAATCCAAG
* *
45384182 ATAAAGAAATCCATG
1 ATAAGGAAATCCAAG
45384197 ATAAGGAAAT
1 ATAAGGAAAT
45384207 ACCATTTACA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.55, C:0.10, G:0.17, T:0.17
Consensus pattern (15 bp):
ATAAGGAAATCCAAG
Found at i:45387060 original size:49 final size:50
Alignment explanation
Indices: 45386993--45387234 Score: 242
Period size: 49 Copynumber: 4.9 Consensus size: 50
45386983 TTGTAGCCAA
* ** *
45386993 AGTTATCTGGTATGCGTAGTAGCCTGCGCTTAGTACTACACA-TACGACC
1 AGTTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACTACGACC
* * *
45387042 AGTTATCCGGTACACGTAGTAGCTTGTACTTAGTACTACACACGA-GACC
1 AGTTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACTACGACC
*** * *
45387091 TAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGA--
1 -AGTTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACAC-T-A-CGACC
* * * * *
45387143 AGTTATCGGGTACGCATAGTAGCCTACACTTAGTACTACACA-TGCGACC
1 AGTTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACTACGACC
* *
45387192 AATTATCCGGTACACGTAGTACCCTGCACTTAGTACTACACAC
1 AGTTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACAC
45387235 GTGACCTCAC
Statistics
Matches: 154, Mismatches: 30, Indels: 17
0.77 0.15 0.08
Matches are distributed among these distances:
47 3 0.02
49 77 0.50
50 37 0.24
51 34 0.22
52 1 0.01
54 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (50 bp):
AGTTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACTACGACC
Found at i:45387236 original size:100 final size:101
Alignment explanation
Indices: 45387007--45387239 Score: 287
Period size: 100 Copynumber: 2.3 Consensus size: 101
45386997 ATCTGGTATG
* * * **
45387007 CGTAGTAGCCTGCGCTTAGTACTACACA--T-ACGACCAGTTATCCGGTACACGTAGTAGCTTGT
1 CGTAGTAGCCTGCACTTAGTACTACACACGTGACGA-CAGTTATCCGGTACACATAGTAGCCTAC
*
45387069 ACTTAGTACTACACACGAGACCTAACCATCTGATACA
65 ACTTAGTACTACACACGAGACCTAACCATCCGATACA
* *
45387106 CGTAGTAGCCTGCACTTAGTACTACACACGTGATCGA-AGTTATCGGGTACGCATAGTAGCCTAC
1 CGTAGTAGCCTGCACTTAGTACTACACACGTGA-CGACAGTTATCCGGTACACATAGTAGCCTAC
* * ** *
45387170 ACTTAGTACTACACATGCGACC-AATTATCCGGTACA
65 ACTTAGTACTACACACGAGACCTAACCATCCGATACA
*
45387206 CGTAGTACCCTGCACTTAGTACTACACACGTGAC
1 CGTAGTAGCCTGCACTTAGTACTACACACGTGAC
45387240 CTCACAATAG
Statistics
Matches: 116, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
99 28 0.24
100 42 0.36
101 42 0.36
102 1 0.01
103 3 0.03
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (101 bp):
CGTAGTAGCCTGCACTTAGTACTACACACGTGACGACAGTTATCCGGTACACATAGTAGCCTACA
CTTAGTACTACACACGAGACCTAACCATCCGATACA
Found at i:45389559 original size:5 final size:5
Alignment explanation
Indices: 45389545--45389590 Score: 60
Period size: 5 Copynumber: 9.4 Consensus size: 5
45389535 GCAACCAAAT
*
45389545 TTTTA TTTTTA TTTTA TTTTA TTTTA TTTTA --TTA CTTTA TTTTA TT
1 TTTTA -TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TT
45389591 ATTTATTAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
3 3 0.08
5 29 0.78
6 5 0.14
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTTA
Found at i:45389595 original size:20 final size:21
Alignment explanation
Indices: 45389546--45389607 Score: 74
Period size: 20 Copynumber: 3.0 Consensus size: 21
45389536 CAACCAAATT
*
45389546 TTTATTT-TTATTTTATTTTA
1 TTTATTTATTAATTTATTTTA
*
45389566 TTTTATTTTATTACTTTATTTTA
1 -TTTA-TTTATTAATTTATTTTA
45389589 -TTATTTATTAATTTATTTT
1 TTTATTTATTAATTTATTTT
45389608 GTTTGGATAT
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
20 15 0.41
21 7 0.19
22 3 0.08
23 12 0.32
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.76
Consensus pattern (21 bp):
TTTATTTATTAATTTATTTTA
Found at i:45389603 original size:28 final size:28
Alignment explanation
Indices: 45389552--45389605 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
45389542 AATTTTTATT
* *
45389552 TTTATTTTATTTTATTTTATTTTATTAC
1 TTTATTTTATTTTATATTAATTTATTAC
45389580 TTTATTTTATTATT-TATTAATTTATT
1 TTTATTTTATT-TTATATTAATTTATT
45389606 TTGTTTGGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
28 21 0.91
29 2 0.09
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.74
Consensus pattern (28 bp):
TTTATTTTATTTTATATTAATTTATTAC
Found at i:45390757 original size:99 final size:99
Alignment explanation
Indices: 45390586--45390777 Score: 289
Period size: 99 Copynumber: 1.9 Consensus size: 99
45390576 TACTTAAGAA
**
45390586 TATGTTGGGCTGAGTAACCGGAGTGAGGTGCTTAGCTATCATATCTCTTCGCGTCAAAAGGTTTG
1 TATGTTGGGCTGAGTAACCGGAGTGAGGTGCTTAGCTATCATATCTCTTCGCGTCAAAAGGTTCA
45390651 ATATATTCTTAAG-AAAAATATAATAAATTAGGAG
66 ATATATTCTTAAGCAAAAATA-AATAAATTAGGAG
* * * * *
45390685 TATGTTGGGCTGAGTAACC-GAGTTGGGGTGCTTGGTTGTCATCTCTCTTCGCGTCAAAAGGTTC
1 TATGTTGGGCTGAGTAACCGGAG-TGAGGTGCTTAGCTATCATATCTCTTCGCGTCAAAAGGTTC
45390749 AATATATTCTTAAGCAAAAATAAATAAAT
65 AATATATTCTTAAGCAAAAATAAATAAAT
45390778 AATAAATTAA
Statistics
Matches: 84, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
98 3 0.04
99 74 0.88
100 7 0.08
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.33
Consensus pattern (99 bp):
TATGTTGGGCTGAGTAACCGGAGTGAGGTGCTTAGCTATCATATCTCTTCGCGTCAAAAGGTTCA
ATATATTCTTAAGCAAAAATAAATAAATTAGGAG
Found at i:45391447 original size:10 final size:10
Alignment explanation
Indices: 45391434--45391481 Score: 71
Period size: 10 Copynumber: 4.8 Consensus size: 10
45391424 TTATTTTCAT
45391434 TTATCTTTAA
1 TTATCTTTAA
45391444 TTATCTTTAA
1 TTATCTTTAA
45391454 TTATCTTTAA
1 TTATCTTTAA
*
45391464 TTAT-TTGTAT
1 TTATCTT-TAA
45391474 TTATCTTT
1 TTATCTTT
45391482 TAGAATTTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
9 2 0.06
10 31 0.89
11 2 0.06
ACGTcount: A:0.25, C:0.08, G:0.02, T:0.65
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:45392247 original size:38 final size:39
Alignment explanation
Indices: 45392205--45392285 Score: 130
Period size: 39 Copynumber: 2.1 Consensus size: 39
45392195 ATTTTTGAAA
*
45392205 TTTCA-ATCAAAACTTTTAATTCTGTTTTATTTT-ATTTT
1 TTTCAGATCAAAACTTTTAATTCTATTTT-TTTTAATTTT
45392243 TTTCAGATCAAAACTTTTAATTCTATTTTTTTTAATTTT
1 TTTCAGATCAAAACTTTTAATTCTATTTTTTTTAATTTT
45392282 TTTC
1 TTTC
45392286 TAGGTACGCG
Statistics
Matches: 40, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
38 9 0.22
39 31 0.77
ACGTcount: A:0.26, C:0.11, G:0.02, T:0.60
Consensus pattern (39 bp):
TTTCAGATCAAAACTTTTAATTCTATTTTTTTTAATTTT
Found at i:45393816 original size:31 final size:31
Alignment explanation
Indices: 45393765--45393848 Score: 87
Period size: 31 Copynumber: 2.7 Consensus size: 31
45393755 CTCATGCTCA
* ** * *
45393765 ACCTTTATTTTTTAGACTTTTGAGCAAATTT
1 ACCTTTGTTTTTTATTCTTTTGAACAAACTT
**
45393796 TTCTTTGTTTTTTATTCTTTTGAACAAACTT
1 ACCTTTGTTTTTTATTCTTTTGAACAAACTT
*
45393827 ACCTTTGTTCTTTCATTCTTTT
1 ACCTTTGTT-TTTTATTCTTTT
45393849 TTTTTTACAT
Statistics
Matches: 42, Mismatches: 10, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
31 31 0.74
32 11 0.26
ACGTcount: A:0.19, C:0.15, G:0.07, T:0.58
Consensus pattern (31 bp):
ACCTTTGTTTTTTATTCTTTTGAACAAACTT
Found at i:45398474 original size:96 final size:96
Alignment explanation
Indices: 45398359--45398548 Score: 326
Period size: 96 Copynumber: 2.0 Consensus size: 96
45398349 AAACATGTTT
* *
45398359 ATCTTTTATCACATCTTTTATTAGGTCAAATTAACATCCTTATGACCCAGTTTTACACGGTCTTG
1 ATCTTTTATCACATCTTTTACTAGGTCAAATTAACATCCTTATGACCCAATTTTACACGGTCTTG
*
45398424 TCATCCAAATGAAGTTGATGTGTACATGTAC
66 TCATCCAAATGAAGTGGATGTGTACATGTAC
* *
45398455 ATCTTTTATCACATCTTTTACTGGGTCAAATTAACATCCTTATGACCCAATTTTTCACGGTCTTG
1 ATCTTTTATCACATCTTTTACTAGGTCAAATTAACATCCTTATGACCCAATTTTACACGGTCTTG
*
45398520 TCGTCCAAATGAAGTGGATGTGTACATGT
66 TCATCCAAATGAAGTGGATGTGTACATGT
45398549 CCATGCATCA
Statistics
Matches: 88, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
96 88 1.00
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.38
Consensus pattern (96 bp):
ATCTTTTATCACATCTTTTACTAGGTCAAATTAACATCCTTATGACCCAATTTTACACGGTCTTG
TCATCCAAATGAAGTGGATGTGTACATGTAC
Found at i:45399168 original size:14 final size:16
Alignment explanation
Indices: 45399145--45399180 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
45399135 TTTTCTCTCA
45399145 TTTT-TTCTTTA-T-T
1 TTTTATTCTTTACTCT
45399158 TTTTATTCTTTACTCT
1 TTTTATTCTTTACTCT
45399174 TTTTATT
1 TTTTATT
45399181 TCTCTTTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 4 0.20
14 7 0.35
15 1 0.05
16 8 0.40
ACGTcount: A:0.11, C:0.11, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTTATTCTTTACTCT
Found at i:45400323 original size:24 final size:24
Alignment explanation
Indices: 45400286--45400338 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
45400276 TCTATCTCTC
* *
45400286 TCCTTACCTTATTCTCTTATTGCT
1 TCCTTACCTCATTCTCTTATAGCT
*
45400310 TCCTTGCCTCATTCTCTTATAGCT
1 TCCTTACCTCATTCTCTTATAGCT
45400334 TCCTT
1 TCCTT
45400339 TAATTGCCTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.11, C:0.32, G:0.06, T:0.51
Consensus pattern (24 bp):
TCCTTACCTCATTCTCTTATAGCT
Found at i:45406918 original size:105 final size:105
Alignment explanation
Indices: 45406486--45406906 Score: 824
Period size: 105 Copynumber: 4.0 Consensus size: 105
45406476 GAGAATGCAA
45406486 AATAGTATAAAGAGGGTTATTGGGAAGACCTAAACCAGGCCTTCCTTTCCACCAAAATTCTAAAA
1 AATAGTATAAAGAGGGTTATTGGGAAGACCTAAACCAGGCCTTCCTTTCCACCAAAATTCTAAAA
45406551 ATACATTGACGTTAAGCAACTTGTATTTGCCCTTAATTAT
66 ATACATTGACGTTAAGCAACTTGTATTTGCCCTTAATTAT
45406591 AATAGTATAAAGAGGGTTATTGGGAAGACCTAAACCAGGCCTTCCTTTCCACCAAAATTCTAAAA
1 AATAGTATAAAGAGGGTTATTGGGAAGACCTAAACCAGGCCTTCCTTTCCACCAAAATTCTAAAA
*
45406656 ATACATTGACGTTAAGCAACTTGTGTTTGCCCTTAATTAT
66 ATACATTGACGTTAAGCAACTTGTATTTGCCCTTAATTAT
45406696 AATAGTATAAAGAGGGTTATTGGGAAGACCTAAACCAGGCCTTCCTTTCCACCAAAATTCTAAAA
1 AATAGTATAAAGAGGGTTATTGGGAAGACCTAAACCAGGCCTTCCTTTCCACCAAAATTCTAAAA
*
45406761 ATACATTGACGTTAAGCAACTTGTGTTTGCCCTTAATTAT
66 ATACATTGACGTTAAGCAACTTGTATTTGCCCTTAATTAT
45406801 AATAGTATAAAGAGGGTTATTGGGAAGACCTAAACCAGGCCTTCCTTTCCACCAAAATTCTAAAA
1 AATAGTATAAAGAGGGTTATTGGGAAGACCTAAACCAGGCCTTCCTTTCCACCAAAATTCTAAAA
45406866 ATACATTGACGTTAAGCAACTTGTATTTGCCCTTAATTAT
66 ATACATTGACGTTAAGCAACTTGTATTTGCCCTTAATTAT
45406906 A
1 A
45406907 TTTGTTGAAA
Statistics
Matches: 314, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
105 314 1.00
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30
Consensus pattern (105 bp):
AATAGTATAAAGAGGGTTATTGGGAAGACCTAAACCAGGCCTTCCTTTCCACCAAAATTCTAAAA
ATACATTGACGTTAAGCAACTTGTATTTGCCCTTAATTAT
Found at i:45407836 original size:19 final size:18
Alignment explanation
Indices: 45407814--45407862 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
45407804 AAATTACAAA
*
45407814 AAAAATTAAAATTGATTTT
1 AAAAATTAAAA-TAATTTT
*
45407833 AAAAATTCATAATAATTTT
1 AAAAATT-AAAATAATTTT
*
45407852 TAAAATTAAAA
1 AAAAATTAAAA
45407863 GATATACTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
18 3 0.12
19 19 0.76
20 3 0.12
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (18 bp):
AAAAATTAAAATAATTTT
Found at i:45409572 original size:38 final size:38
Alignment explanation
Indices: 45409517--45409637 Score: 163
Period size: 38 Copynumber: 3.2 Consensus size: 38
45409507 TGGACCTGCC
* * *
45409517 ATGGTCTTTACATTTTATCACAATACCAGAGCCCAGCT
1 ATGGTCTTTACACTTTATCACAATGCCATAGCCCAGCT
*
45409555 ATGGTCTTTACACTTTATCACAATGCCATAGCTCAGCT
1 ATGGTCTTTACACTTTATCACAATGCCATAGCCCAGCT
* * *
45409593 ATGGTC-TTACACTTTAATTACGATGCCATAACCCAGCT
1 ATGGTCTTTACACTTT-ATCACAATGCCATAGCCCAGCT
45409631 ATGGTCT
1 ATGGTCT
45409638 ACACGTACAC
Statistics
Matches: 73, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
37 9 0.12
38 64 0.88
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (38 bp):
ATGGTCTTTACACTTTATCACAATGCCATAGCCCAGCT
Found at i:45422015 original size:46 final size:48
Alignment explanation
Indices: 45421871--45422233 Score: 223
Period size: 46 Copynumber: 7.7 Consensus size: 48
45421861 TTTGTGTGCT
* * * **
45421871 AGTGTAAGA-CATGTCTGGTACA-GGCATCAGCCACATTATG-AGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAAAATGTA-AGCC
* * * * ** * * *
45421917 AGTGTAAGATCATGTCTGAGATATGGCATCGGCATTGAGACG-AGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAAAATGTA-AGCC
*
45421965 AGTGTAAGA-CATGTATGGGACAT-GCATCGGCCTCAAAATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAAAATGTAAGCC
* * * *
45422011 AGTGTAAGA-CATGTTTGGGACAT-GCATCGG-CTACGAGATGT--GTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CAAAATGTAAGCC
* * * *
45422055 AGTGTAAGACCATGTCTGGGACATGGCATC-GACACAGATATGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCA-AAATGT-A-AGCC
* ** ** ** **
45422105 AGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTTGATTTCAATAGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAAAATGTA-AGCC
* * * **
45422154 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATG--AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCA-AAATGTAAGCC
45422201 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
45422234 AGTATACCCT
Statistics
Matches: 250, Mismatches: 53, Indels: 27
0.76 0.16 0.08
Matches are distributed among these distances:
44 11 0.04
45 17 0.07
46 70 0.28
47 56 0.22
48 24 0.10
49 36 0.14
50 34 0.14
51 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAAAATGTAAGCC
Found at i:45422167 original size:99 final size:96
Alignment explanation
Indices: 45421870--45422233 Score: 283
Period size: 94 Copynumber: 3.8 Consensus size: 96
45421860 GTTTGTGTGC
* * * *
45421870 TAGTGTAAGA-CATGTCTGGTACA-GGCATC-AGCCACAT-TATGAGAGCCAGTGTAAGATCATG
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGA-CCAGATGGAT--GAGCCAGTGTAAGACCATG
* * * ** * * *
45421931 TCTGAGATATGGCATCGGCATTGA-GACGAGAGC
63 TCTGGGACATGGCATCGGCCTTGATTTCAATAGT
* * * *
45421964 TAGTGTAAGA-CATGTATGGGACAT-GCATCGGCCTCAAAAT-G-TAAGCCAGTGTAAGA-CATG
1 TAGTGTAAGACCATGTCTGGGACATGGCATC-GAC-C-AGATGGATGAGCCAGTGTAAGACCATG
* * ** *
45422024 TTTGGGACAT-GCATCGG-CTACGAGAT--GT-GT
63 TCTGGGACATGGCATCGGCCT-TGATTTCAATAGT
* *
45422054 CAGTGTAAGACCATGTCTGGGACATGGCATCGACACAGATATGTGA-GAGCTAGTGTAAGACCAT
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGAC-CAG--ATG-GATGAGCCAGTGTAAGACCAT
*
45422118 GTCTGGGACATGGCGTCGGCCTTGATTTCAATAGT
62 GTCTGGGACATGGCATCGGCCTTGATTTCAATAGT
**
45422153 TAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATGAGCCAGTGTAAGACCATGTCT
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGACCAGATGGATGAGCCAGTGTAAGACCATGTCT
45422218 GGGACATGGCATCGGC
66 GGGACATGGCATCGGC
45422234 AGTATACCCT
Statistics
Matches: 215, Mismatches: 34, Indels: 40
0.74 0.12 0.14
Matches are distributed among these distances:
90 11 0.05
91 17 0.08
92 16 0.07
93 11 0.05
94 52 0.24
95 16 0.07
96 50 0.23
97 5 0.02
98 2 0.01
99 35 0.16
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.24
Consensus pattern (96 bp):
TAGTGTAAGACCATGTCTGGGACATGGCATCGACCAGATGGATGAGCCAGTGTAAGACCATGTCT
GGGACATGGCATCGGCCTTGATTTCAATAGT
Found at i:45435338 original size:23 final size:23
Alignment explanation
Indices: 45435312--45435355 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
45435302 TCTCACCTGC
45435312 TTTAGAACTTACAAAAAAGAAGA
1 TTTAGAACTTACAAAAAAGAAGA
*
45435335 TTTAGAACTTACAAAGAAGAA
1 TTTAGAACTTACAAAAAAGAA
45435356 CATAAAGTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.55, C:0.09, G:0.14, T:0.23
Consensus pattern (23 bp):
TTTAGAACTTACAAAAAAGAAGA
Found at i:45436314 original size:20 final size:22
Alignment explanation
Indices: 45436289--45436341 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 22
45436279 AATTTGTTTC
*
45436289 ATGCGAACCCTAG-GTT-AAAT
1 ATGCGAACCCTAGTATTCAAAT
*
45436309 ATGCGAATCCT-GTATTCAAAT
1 ATGCGAACCCTAGTATTCAAAT
45436330 ATGCGAACCCTA
1 ATGCGAACCCTA
45436342 TATATATTAC
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
19 1 0.04
20 12 0.44
21 14 0.52
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (22 bp):
ATGCGAACCCTAGTATTCAAAT
Found at i:45436394 original size:24 final size:22
Alignment explanation
Indices: 45436361--45436406 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
45436351 CATGTGAATT
45436361 CTATACATGAGTTATATGCAAACC
1 CTATACATGA--TATATGCAAACC
*
45436385 CTATATATGATATATGCAAACC
1 CTATACATGATATATGCAAACC
45436407 ATTGAACATG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 12 0.57
24 9 0.43
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (22 bp):
CTATACATGATATATGCAAACC
Found at i:45445195 original size:29 final size:30
Alignment explanation
Indices: 45445132--45445192 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 30
45445122 ATATAGTAAA
*
45445132 TTAAATT--TTTTTATTAACATAGAATGTT
1 TTAAATTGATTTTTATTAACATAGAAAGTT
*
45445160 TTAAATTGATTTTTGTT-ACAT-GAAAGTT
1 TTAAATTGATTTTTATTAACATAGAAAGTT
45445188 TTAAA
1 TTAAA
45445193 ATTTAATAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 18 0.62
29 4 0.14
30 7 0.24
ACGTcount: A:0.36, C:0.03, G:0.10, T:0.51
Consensus pattern (30 bp):
TTAAATTGATTTTTATTAACATAGAAAGTT
Found at i:45448607 original size:47 final size:48
Alignment explanation
Indices: 45448538--45448761 Score: 180
Period size: 47 Copynumber: 4.8 Consensus size: 48
45448528 AAGGTGCCGG
* *
45448538 TGCCATGTCCCAGACACGGTCTTACACTAGCTCAT-ATCTCATGTCAA
1 TGCCATGTCCCAGACATGGTCTTACACTAGCTCATCATCTCATGCCAA
*
45448585 TGCCATGTCCCAGACATGGTCTTACACT-GACT-ATCATCTCGTAGCCAA
1 TGCCATGTCCCAGACATGGTCTTACACTAG-CTCATCATCTCAT-GCCAA
* * * * * * *
45448633 TG-CGTGTCCTAGACAT-GTCTTACACTGGCTTA-CGTCTCGAGGCCGA
1 TGCCATGTCCCAGACATGGTCTTACACTAGCTCATCATCTC-ATGCCAA
* * * ***
45448679 TG-CATGTCCCAGACAT-GTCTTACACTAGCAC-TCGTCTTGATGTTGA
1 TGCCATGTCCCAGACATGGTCTTACACTAGCTCATCATC-TCATGCCAA
* *
45448725 TGCCATGTCCTAGACATGGTCTTACACTGGCTC-TCAT
1 TGCCATGTCCCAGACATGGTCTTACACTAGCTCATCAT
45448762 AATGTGGCTG
Statistics
Matches: 145, Mismatches: 22, Indels: 19
0.78 0.12 0.10
Matches are distributed among these distances:
46 60 0.41
47 63 0.43
48 22 0.15
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.29
Consensus pattern (48 bp):
TGCCATGTCCCAGACATGGTCTTACACTAGCTCATCATCTCATGCCAA
Found at i:45448715 original size:46 final size:46
Alignment explanation
Indices: 45448541--45448801 Score: 167
Period size: 46 Copynumber: 5.6 Consensus size: 46
45448531 GTGCCGGTGC
* * * * *
45448541 CATGTCCCAGACACGGTCTTACACTAGCTCAT-ATCTC-ATGTCAATG
1 CATGTCCCAGACA-TGTCTTACACTAGCAC-TCATCTCGAGGCCGATG
*
45448587 CCATGTCCCAGACATGGTCTTACACT-G-ACTATCATCTCGTA-GCCAATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCAC--TCATCTCG-AGGCCGATG
* * * * *
45448635 CGTGTCCTAGACATGTCTTACACTGGC-TTACGTCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCACT-CATCTCGAGGCCGATG
* * * **
45448681 CATGTCCCAGACATGTCTTACACTAGCACTCGTCTTGATGTTGATG
1 CATGTCCCAGACATGTCTTACACTAGCACTCATCTCGAGGCCGATG
* * * * * *
45448727 CCATGTCCTAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCTGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCACTCAT-CTCGAGGCCGATG
*
45448775 CATGTCCCAAACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
45448802 CCATAATAAT
Statistics
Matches: 174, Mismatches: 27, Indels: 27
0.76 0.12 0.12
Matches are distributed among these distances:
45 3 0.02
46 73 0.42
47 67 0.39
48 29 0.17
49 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCACTCATCTCGAGGCCGATG
Found at i:45448793 original size:140 final size:140
Alignment explanation
Indices: 45448541--45448798 Score: 324
Period size: 140 Copynumber: 1.8 Consensus size: 140
45448531 GTGCCGGTGC
45448541 CATGTCCCAGACACGGTCTTACACTAGCTCATATCTCATGTCAATGCCATGTCCCAGACATGGTC
1 CATGTCCCAGACACGGTCTTACACTAGCTCATATCTCATGTCAATGCCATGTCCCAGACATGGTC
* * * *
45448606 TTACACTGACTATCATCTCGTAGCCAATGCGTGTCCTAGACATGTCTTACACTGGCTTACGTCTC
66 TTACACTGACTATCATATCGTAGCCAATGCATGTCCCAAACATGTCTTACACTGGCTTACGTCTC
45448671 GAGGCCGATG
131 GAGGCCGATG
* * * * ** *
45448681 CATGTCCCAGACA-TGTCTTACACTAGCAC-TCGTCTTGATGTTGATGCCATGTCCTAGACATGG
1 CATGTCCCAGACACGGTCTTACACTAGCTCAT-ATC-TCATGTCAATGCCATGTCCCAGACATGG
* * * **
45448744 TCTTACACTGGCTCTCATAAT-GTGGCTGATGCATGTCCCAAACATGTCTTACACT
64 TCTTACACTGACTATCAT-ATCGTAGCCAATGCATGTCCCAAACATGTCTTACACT
45448799 AGCCCATAAT
Statistics
Matches: 99, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
138 1 0.01
139 16 0.16
140 81 0.82
141 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (140 bp):
CATGTCCCAGACACGGTCTTACACTAGCTCATATCTCATGTCAATGCCATGTCCCAGACATGGTC
TTACACTGACTATCATATCGTAGCCAATGCATGTCCCAAACATGTCTTACACTGGCTTACGTCTC
GAGGCCGATG
Found at i:45448811 original size:47 final size:43
Alignment explanation
Indices: 45448677--45448803 Score: 128
Period size: 47 Copynumber: 2.8 Consensus size: 43
45448667 TCTCGAGGCC
* *
45448677 GATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTTGATGTT
1 GATGCATGTCCCAGACATGTCTTACACTAGC-C-C-TCATAATGTT
* * *
45448723 GATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCCCTCATAATGT---T
*
45448771 GATGCATGTCCCAAACATGTCTTACACTAGCCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCCC
45448804 ATAATAATCC
Statistics
Matches: 67, Mismatches: 9, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
45 7 0.10
46 18 0.27
47 25 0.37
48 17 0.25
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.30
Consensus pattern (43 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCCCTCATAATGTT
Found at i:45450556 original size:30 final size:30
Alignment explanation
Indices: 45450520--45450593 Score: 130
Period size: 30 Copynumber: 2.5 Consensus size: 30
45450510 CATGGGTTGT
45450520 CACACGGTCGTGTGCCACACACAACCATAC
1 CACACGGTCGTGTGCCACACACAACCATAC
*
45450550 CACACGGTCGTGTGCCACACACAACTATAC
1 CACACGGTCGTGTGCCACACACAACCATAC
*
45450580 CACACGATCGTGTG
1 CACACGGTCGTGTG
45450594 GCCTACTTAA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 42 1.00
ACGTcount: A:0.28, C:0.36, G:0.19, T:0.16
Consensus pattern (30 bp):
CACACGGTCGTGTGCCACACACAACCATAC
Found at i:45451951 original size:21 final size:21
Alignment explanation
Indices: 45451907--45451951 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
45451897 AAACTTAAGC
*
45451907 TTATTTGACATAATTATTAAA
1 TTATTTGACATAATCATTAAA
* *
45451928 TTATTTGACATAATCCTTAGA
1 TTATTTGACATAATCATTAAA
45451949 TTA
1 TTA
45451952 GCACATTGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.09, G:0.07, T:0.47
Consensus pattern (21 bp):
TTATTTGACATAATCATTAAA
Found at i:45452155 original size:32 final size:32
Alignment explanation
Indices: 45452119--45452179 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
45452109 TCAATAATTA
45452119 CACTAATTTAATG-TTAAACAAATTATAGAATC
1 CACTAATTTAATGTTTAAA-AAATTATAGAATC
* *
45452151 CACTAATTTAGTGTTTAAAAAATTCTAGA
1 CACTAATTTAATGTTTAAAAAATTATAGA
45452180 TAGGAAAAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
32 21 0.81
33 5 0.19
ACGTcount: A:0.44, C:0.11, G:0.08, T:0.36
Consensus pattern (32 bp):
CACTAATTTAATGTTTAAAAAATTATAGAATC
Found at i:45453200 original size:10 final size:10
Alignment explanation
Indices: 45453185--45453209 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
45453175 CAATCCATAT
45453185 TATTTTTTAA
1 TATTTTTTAA
45453195 TATTTTTTAA
1 TATTTTTTAA
45453205 TATTT
1 TATTT
45453210 ATATTATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (10 bp):
TATTTTTTAA
Found at i:45453225 original size:16 final size:17
Alignment explanation
Indices: 45453190--45453232 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
45453180 CATATTATTT
45453190 TTTAATATTTTTTAATA
1 TTTAATATTTTTTAATA
45453207 TTT-ATATTATTTTAA-A
1 TTTAATATT-TTTTAATA
45453223 TTTAATATTT
1 TTTAATATTT
45453233 AATATTTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
16 10 0.42
17 14 0.58
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (17 bp):
TTTAATATTTTTTAATA
Found at i:45453249 original size:10 final size:9
Alignment explanation
Indices: 45453188--45453251 Score: 50
Period size: 10 Copynumber: 7.6 Consensus size: 9
45453178 TCCATATTAT
45453188 TTTTTAATA
1 TTTTTAATA
45453197 TTTTTTAATA
1 -TTTTTAATA
* *
45453207 TTTATATTA
1 TTTTTAATA
45453216 -TTTTAA-A
1 TTTTTAATA
45453223 --TTTAATA
1 TTTTTAATA
45453230 --TTTAATA
1 TTTTTAATA
45453237 TTTTTATATA
1 TTTTTA-ATA
45453247 TTTTT
1 TTTTT
45453252 CTATTTATTG
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
6 5 0.11
7 9 0.20
8 4 0.09
9 11 0.24
10 17 0.37
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (9 bp):
TTTTTAATA
Found at i:45457947 original size:21 final size:21
Alignment explanation
Indices: 45457921--45457976 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
45457911 AATAGCGGTG
*
45457921 GCGGTGAGATTAGTTACTGTA
1 GCGGTGAGATTAGATACTGTA
* *
45457942 GCGGTGAGATTGGATATTGTA
1 GCGGTGAGATTAGATACTGTA
45457963 GCGGTGAGATTAGA
1 GCGGTGAGATTAGA
45457977 AACAGCGGTG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.25, C:0.07, G:0.38, T:0.30
Consensus pattern (21 bp):
GCGGTGAGATTAGATACTGTA
Found at i:45461540 original size:32 final size:32
Alignment explanation
Indices: 45461500--45461652 Score: 225
Period size: 32 Copynumber: 4.8 Consensus size: 32
45461490 AAAAAATATG
* *
45461500 ATACATTAGGTTTACGTATAAAAAAGTAGATC
1 ATACATTAGTTTTACATATAAAAAAGTAGATC
* *
45461532 ATACATTAGTTTTGCATATAAAAAAGTAGATA
1 ATACATTAGTTTTACATATAAAAAAGTAGATC
* *
45461564 ATACATTAGGTTCACATATAAAAAAGTAGATC
1 ATACATTAGTTTTACATATAAAAAAGTAGATC
* * *
45461596 ATACATTAGTTTTGCAAATGAAAAAGTAGATC
1 ATACATTAGTTTTACATATAAAAAAGTAGATC
45461628 ATACATTAGTTTTACATATAAAAAA
1 ATACATTAGTTTTACATATAAAAAA
45461653 CTAGCATAGT
Statistics
Matches: 105, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 105 1.00
ACGTcount: A:0.46, C:0.09, G:0.12, T:0.32
Consensus pattern (32 bp):
ATACATTAGTTTTACATATAAAAAAGTAGATC
Found at i:45461585 original size:64 final size:64
Alignment explanation
Indices: 45461500--45461652 Score: 252
Period size: 64 Copynumber: 2.4 Consensus size: 64
45461490 AAAAAATATG
* *
45461500 ATACATTAGGTTTACGTATAAAAAAGTAGATCATACATTAGTTTTGCATATAAAAAAGTAGATA
1 ATACATTAGGTTTACATATAAAAAAGTAGATCATACATTAGTTTTGCAAATAAAAAAGTAGATA
* * *
45461564 ATACATTAGGTTCACATATAAAAAAGTAGATCATACATTAGTTTTGCAAATGAAAAAGTAGATC
1 ATACATTAGGTTTACATATAAAAAAGTAGATCATACATTAGTTTTGCAAATAAAAAAGTAGATA
*
45461628 ATACATTAGTTTTACATATAAAAAA
1 ATACATTAGGTTTACATATAAAAAA
45461653 CTAGCATAGT
Statistics
Matches: 82, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
64 82 1.00
ACGTcount: A:0.46, C:0.09, G:0.12, T:0.32
Consensus pattern (64 bp):
ATACATTAGGTTTACATATAAAAAAGTAGATCATACATTAGTTTTGCAAATAAAAAAGTAGATA
Found at i:45462893 original size:18 final size:18
Alignment explanation
Indices: 45462870--45462905 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
45462860 ATAACACAAG
45462870 TGTAAGCATAAATCAGTA
1 TGTAAGCATAAATCAGTA
45462888 TGTAAGCATAAATCAGTA
1 TGTAAGCATAAATCAGTA
45462906 ATACAATAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.44, C:0.11, G:0.17, T:0.28
Consensus pattern (18 bp):
TGTAAGCATAAATCAGTA
Found at i:45463980 original size:18 final size:19
Alignment explanation
Indices: 45463945--45463980 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
45463935 ATGATATTAA
45463945 TGATATACCTACAAGGTAG
1 TGATATACCTACAAGGTAG
45463964 TGATATACCTA-AAGGTA
1 TGATATACCTACAAGGTA
45463981 TAAAAACAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28
Consensus pattern (19 bp):
TGATATACCTACAAGGTAG
Found at i:45466618 original size:40 final size:40
Alignment explanation
Indices: 45466563--45466674 Score: 154
Period size: 40 Copynumber: 2.8 Consensus size: 40
45466553 TATTCGGATG
45466563 ATATCCAGGCTAAGATCCGAAGGCATTTGTGCTAGTTACT
1 ATATCCAGGCTAAGATCCGAAGGCATTTGTGCTAGTTACT
* * *
45466603 ATATCCAGACTAAGATCCGAAGGCAATTGTGCTAGTTATT
1 ATATCCAGGCTAAGATCCGAAGGCATTTGTGCTAGTTACT
* * *
45466643 ATAACCAGGTTAAG-TCCCGAAGGCATTCGTGC
1 ATATCCAGGCTAAGAT-CCGAAGGCATTTGTGC
45466675 GGGTTATTAT
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.02
40 62 0.98
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (40 bp):
ATATCCAGGCTAAGATCCGAAGGCATTTGTGCTAGTTACT
Found at i:45466681 original size:40 final size:40
Alignment explanation
Indices: 45466579--45466759 Score: 213
Period size: 40 Copynumber: 4.5 Consensus size: 40
45466569 AGGCTAAGAT
* * * * **
45466579 CCGAAGGCATTTGTGCTAGTTACTATATCCAGACTAAGAT-
1 CCGAAGGCATTCGTGCTGGTTATTATAACCAGGTTAAG-TC
*
45466619 CCGAAGGCAATT-GTGCTAGTTATTATAACCAGGTTAAGTC
1 CCGAAGGC-ATTCGTGCTGGTTATTATAACCAGGTTAAGTC
* **
45466659 CCGAAGGCATTCGTGCGGGTTATTATAACTGGGTTAAGTC
1 CCGAAGGCATTCGTGCTGGTTATTATAACCAGGTTAAGTC
* * *
45466699 CCGAAGGTATTCGTGCGGGTTATTATAACCGGGTTAAGTC
1 CCGAAGGCATTCGTGCTGGTTATTATAACCAGGTTAAGTC
45466739 CCGAAGGCATTCGTGCTGGTT
1 CCGAAGGCATTCGTGCTGGTT
45466760 GTTACATCCG
Statistics
Matches: 126, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
39 4 0.03
40 119 0.94
41 3 0.02
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.30
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCTGGTTATTATAACCAGGTTAAGTC
Found at i:45471309 original size:65 final size:65
Alignment explanation
Indices: 45471236--45471385 Score: 162
Period size: 66 Copynumber: 2.3 Consensus size: 65
45471226 TATATGCGTA
* * * *
45471236 AAGTTTTTAGTCTA-TTTGTGTTGCAATTATATTTTCT-AATCCCACAATGTCCTATTATCATGG
1 AAGTTTTTAGT-TAGATTATGTTGCAATTATATTTT-TGAATCCCACAATGTCCTATCATCAAGG
45471299 GT
64 GT
* * * * *
45471301 AAGTTTTTAGTTAGGATTATGTTGTAATTATATTTTTGAGTCCCATAGTGTTCTATCATCAAGGG
1 AAGTTTTTAGTTA-GATTATGTTGCAATTATATTTTTGAATCCCACAATGTCCTATCATCAAGGG
45471366 T
65 T
45471367 AAG-TTTTAGTTAGGATTAT
1 AAGTTTTTAGTTA-GATTAT
45471386 TTTAGTTTTT
Statistics
Matches: 73, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
64 2 0.03
65 28 0.38
66 43 0.59
ACGTcount: A:0.26, C:0.11, G:0.17, T:0.46
Consensus pattern (65 bp):
AAGTTTTTAGTTAGATTATGTTGCAATTATATTTTTGAATCCCACAATGTCCTATCATCAAGGGT
Found at i:45471330 original size:66 final size:65
Alignment explanation
Indices: 45471254--45471385 Score: 176
Period size: 66 Copynumber: 2.0 Consensus size: 65
45471244 AGTCTATTTG
* *
45471254 TGTTGCAATTATATTTTCT-AATCCCACAATGTCCTATTATCATGGGTAAGTTTTTAGTTAGGAT
1 TGTTGCAATTATATTTT-TGAATCCCACAATGTCCTATCATCAAGGGTAAG-TTTTAGTTAGGAT
45471318 TA
64 TA
* * * * *
45471320 TGTTGTAATTATATTTTTGAGTCCCATAGTGTTCTATCATCAAGGGTAAGTTTTAGTTAGGATTA
1 TGTTGCAATTATATTTTTGAATCCCACAATGTCCTATCATCAAGGGTAAGTTTTAGTTAGGATTA
45471385 T
1 T
45471386 TTTAGTTTTT
Statistics
Matches: 58, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
65 17 0.29
66 41 0.71
ACGTcount: A:0.27, C:0.11, G:0.17, T:0.45
Consensus pattern (65 bp):
TGTTGCAATTATATTTTTGAATCCCACAATGTCCTATCATCAAGGGTAAGTTTTAGTTAGGATTA
Found at i:45477438 original size:41 final size:41
Alignment explanation
Indices: 45477373--45477453 Score: 101
Period size: 41 Copynumber: 2.0 Consensus size: 41
45477363 CCAGGTTTTT
* * *
45477373 GGACATGGGCGATGACACGAGCGTGT-CTAGGCCGTGTGAG
1 GGACATGGGCAATAACACGAGCGTGTGCTAGGCCATGTGAG
* *
45477413 GGACATGGGCCAATAACACGGGCGTGTGCTTGGCCATGTGA
1 GGACATGGG-CAATAACACGAGCGTGTGCTAGGCCATGTGA
45477454 AAACCCCTGT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
40 9 0.26
41 14 0.41
42 11 0.32
ACGTcount: A:0.21, C:0.21, G:0.40, T:0.19
Consensus pattern (41 bp):
GGACATGGGCAATAACACGAGCGTGTGCTAGGCCATGTGAG
Found at i:45481198 original size:11 final size:11
Alignment explanation
Indices: 45481182--45481211 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
45481172 TCCATTGCTG
45481182 AAAATAAAAGA
1 AAAATAAAAGA
*
45481193 AAAATAAAATA
1 AAAATAAAAGA
45481204 AAAATAAA
1 AAAATAAA
45481212 GAATAAACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.83, C:0.00, G:0.03, T:0.13
Consensus pattern (11 bp):
AAAATAAAAGA
Found at i:45485087 original size:46 final size:45
Alignment explanation
Indices: 45485037--45485212 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 45
45485027 TGGTTGAGCA
45485037 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *
45485083 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
* *
45485128 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGTGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* *
45485176 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
45485213 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:45485162 original size:24 final size:24
Alignment explanation
Indices: 45485135--45485207 Score: 57
Period size: 24 Copynumber: 3.1 Consensus size: 24
45485125 AGGCATCCGA
45485135 ACTCGTTGAGTTGAGTCCGAGTTC
1 ACTCGTTGAGTTGAGTCCGAGTTC
* * *
45485159 ACTCATGGA-TGTGAACGCCCGAG---
1 ACTCGTTGAGT-TG-A-GTCCGAGTTC
45485182 -CTCGTTGAGTTGAGTCCGAGTTC
1 ACTCGTTGAGTTGAGTCCGAGTTC
45485205 ACT
1 ACT
45485208 TATGGGCGGG
Statistics
Matches: 35, Mismatches: 6, Indels: 16
0.61 0.11 0.28
Matches are distributed among these distances:
20 6 0.17
21 1 0.03
22 8 0.23
23 2 0.06
24 11 0.31
25 1 0.03
26 6 0.17
ACGTcount: A:0.19, C:0.23, G:0.29, T:0.29
Consensus pattern (24 bp):
ACTCGTTGAGTTGAGTCCGAGTTC
Found at i:45485193 original size:93 final size:93
Alignment explanation
Indices: 45485034--45485204 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
45485024 GGATGGTTGA
* * *
45485034 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAACTCGTTGAGT
45485099 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
45485127 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGTGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAACTCGTTGAGT
45485192 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
45485205 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:45494467 original size:53 final size:54
Alignment explanation
Indices: 45494383--45494505 Score: 203
Period size: 53 Copynumber: 2.3 Consensus size: 54
45494373 TGATGAAAAA
*
45494383 AAAAAGAAAGAAAGAAAAGAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAG
1 AAAAAGAAAGAAA-AAAAGAAGCTCTCATGTTGTTCTTGACCGAATAGAAGAAAG
45494438 AAAAAGAAAGAAAAAAA-AAGCTCTCATGTTGTTCTTGACCGAATAGAAGAAAG
1 AAAAAGAAAGAAAAAAAGAAGCTCTCATGTTGTTCTTGACCGAATAGAAGAAAG
* *
45494491 AAAATGAAGGAAAAA
1 AAAAAGAAAGAAAAA
45494506 GAGCTTTGAG
Statistics
Matches: 65, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
53 48 0.74
54 4 0.06
55 13 0.20
ACGTcount: A:0.52, C:0.10, G:0.21, T:0.17
Consensus pattern (54 bp):
AAAAAGAAAGAAAAAAAGAAGCTCTCATGTTGTTCTTGACCGAATAGAAGAAAG
Found at i:45495809 original size:79 final size:78
Alignment explanation
Indices: 45495633--45495850 Score: 291
Period size: 79 Copynumber: 2.8 Consensus size: 78
45495623 ATTCGGATTG
* * * * *
45495633 ATAACC-GGCTAAGTCCCGAAGGCATTAGTGCTAGTGACTA-ATTCCGGGGTAAGCCCAAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATA-TCCGGGCTAAGTCCGAAGGCA
45495696 TTGTGCGAGTTACT
65 TTGTGCGAGTTACT
* *
45495710 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCGAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTCCGAAGGCA-
45495775 TTGTGCGAGTTACT
65 TTGTGCGAGTTACT
* *
45495789 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAG-TAGCTATATCC-GGCTAAACTCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTA-CTATATCCGGGCT-AAGTCCGAAGG
45495851 TACTTGGTTG
Statistics
Matches: 125, Mismatches: 11, Indels: 8
0.87 0.08 0.06
Matches are distributed among these distances:
77 5 0.04
78 55 0.44
79 65 0.52
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (78 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTCCGAAGGCAT
TGTGCGAGTTACT
Found at i:45495850 original size:39 final size:40
Alignment explanation
Indices: 45495639--45495840 Score: 272
Period size: 39 Copynumber: 5.2 Consensus size: 40
45495629 ATTGATAACC
* * *
45495639 GGCTAAGTCCCGAAGGCATTAGTGCTAGTGACTA-ATTCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCG
* *
45495679 GGGTAAG-CCCAAAGGCA-TTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
45495717 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
*
45495757 GGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATAACCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
* *
45495796 GGCTAAGTCCCGAAGGCATTTGAGCTAG-TAGCTATATCC-
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCG
45495835 GGCTAA
1 GGCTAA
45495841 ACTCCGAAGG
Statistics
Matches: 146, Mismatches: 11, Indels: 11
0.87 0.07 0.07
Matches are distributed among these distances:
38 22 0.15
39 65 0.45
40 59 0.40
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
Found at i:45496112 original size:22 final size:21
Alignment explanation
Indices: 45496071--45496114 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
45496061 GAATGTGCAT
45496071 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
45496093 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
45496115 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:45502491 original size:50 final size:51
Alignment explanation
Indices: 45502410--45502529 Score: 199
Period size: 50 Copynumber: 2.4 Consensus size: 51
45502400 AAATGATGAT
45502410 GAAA-AAAAGAAAGAAGAAAAGAAGCTCTCATGTTGTTCTTGCCGAATAGAA
1 GAAAGAAAAGAAAGAA-AAAAGAAGCTCTCATGTTGTTCTTGCCGAATAGAA
45502461 GAAAGAAAAGAAAGAAAAAA-AAGCTCTCATGTTGTTCTTGCCGAATAGAA
1 GAAAGAAAAGAAAGAAAAAAGAAGCTCTCATGTTGTTCTTGCCGAATAGAA
* *
45502511 GATAGAAAAGAAGGAAAAA
1 GAAAGAAAAGAAAGAAAAA
45502530 GAGCTTTGAG
Statistics
Matches: 66, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
50 47 0.71
51 8 0.12
52 11 0.17
ACGTcount: A:0.51, C:0.10, G:0.22, T:0.17
Consensus pattern (51 bp):
GAAAGAAAAGAAAGAAAAAAGAAGCTCTCATGTTGTTCTTGCCGAATAGAA
Found at i:45504886 original size:40 final size:40
Alignment explanation
Indices: 45504735--45504879 Score: 172
Period size: 40 Copynumber: 3.7 Consensus size: 40
45504725 AAGTGACCAT
* *
45504735 ATCCGGACTAAGAT-CCGAAGGCATTTGTGTGAG-TACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
45504774 TTCAGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* *
45504813 ATCCAGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
*
45504854 A-CCGGGCTATGTCCCGAAGGCATTTG
1 ATCCGGGCTAAGTCCCGAAGGCATTTG
45504880 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 13, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
38 17 0.19
39 23 0.26
40 47 0.53
41 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:45504886 original size:80 final size:77
Alignment explanation
Indices: 45504749--45504902 Score: 177
Period size: 80 Copynumber: 2.0 Consensus size: 77
45504739 GGACTAAGAT
* * **
45504749 CCGAAGGCATTTGTGTGAGTACTAATTCAGGGCTAAGCCCGAAGGCATTGGTGCGAGTTA-CTAA
1 CCGAAGGCATTTGTGCGAGTACTAATACAGGGCTAAGCCCGAAGGCATTGGAACGAG-TAGCTAA
45504813 ATCCAGGTTAAGTC
65 ATCC-GGTTAAGTC
* * *
45504827 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCT
1 CCGAAGGCATTTGTGCGAG-TACTAAT-ACAGGGCTAAG-CCCGAAGGCATTGGAACGAGTAGCT
*
45504891 ATATCCGGTTAA
63 AAATCCGGTTAA
45504903 ATTTGAAGGT
Statistics
Matches: 64, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
78 20 0.31
79 20 0.31
80 24 0.38
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (77 bp):
CCGAAGGCATTTGTGCGAGTACTAATACAGGGCTAAGCCCGAAGGCATTGGAACGAGTAGCTAAA
TCCGGTTAAGTC
Found at i:45513059 original size:40 final size:40
Alignment explanation
Indices: 45512870--45513052 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 40
45512860 GAATGATGTT
* * * * *
45512870 CGGGCTATGTCCCGAAGGC-TTTGTGCTAAGTGACCATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATC
* * * *
45512910 CGGACTAAGAT-CCGAAGGCATTTGTGTGAGATACTAATTC
1 CGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATC
*
45512950 CGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
*
45512989 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-C
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATC
* *
45513029 CGGGCTATGTCTCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
45513053 AACGAGTAGC
Statistics
Matches: 119, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
39 33 0.28
40 77 0.65
41 9 0.08
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
Found at i:45513074 original size:79 final size:79
Alignment explanation
Indices: 45512921--45513085 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 79
45512911 GGACTAAGAT
* * **
45512921 CCGAAGGCATTTGTGTGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
45512986 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * * *
45513000 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCTCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
45513063 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
45513079 CCGAAGG
1 CCGAAGG
45513086 TACATGATTC
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.65
80 23 0.32
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:45524543 original size:93 final size:93
Alignment explanation
Indices: 45524434--45524604 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
45524424 GCCCCTGAGT
* * *
45524434 GAACTCAGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
45524499 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
45524527 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
45524592 CGAGTTCGGATGC
66 CGAGTTCGGATGC
45524605 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:45524601 original size:46 final size:46
Alignment explanation
Indices: 45524431--45524601 Score: 188
Period size: 46 Copynumber: 3.7 Consensus size: 46
45524421 CCTGCCCCTG
* * * * *
45524431 AGTGAACTCAGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
* * *
45524477 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--TTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCATA
*
45524525 A-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
45524570 AGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGA
45524602 TGCTCAACCA
Statistics
Matches: 103, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 57 0.55
47 29 0.28
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
Found at i:45545949 original size:59 final size:59
Alignment explanation
Indices: 45545879--45545998 Score: 213
Period size: 59 Copynumber: 2.0 Consensus size: 59
45545869 AAATATTTAC
*
45545879 GGCTTGATTTATAAAAACGAGGTCTCAATACCTCATTTTCTAAAACCACTTGACTATAG
1 GGCTTGATTTATAAAAACAAGGTCTCAATACCTCATTTTCTAAAACCACTTGACTATAG
* *
45545938 GGCTTGATTTATAAAAACAAGGTCTCGATACCTCATTTTCTAAAACCACTTGACTTTAG
1 GGCTTGATTTATAAAAACAAGGTCTCAATACCTCATTTTCTAAAACCACTTGACTATAG
45545997 GG
1 GG
45545999 TCATAACACT
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 58 1.00
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.33
Consensus pattern (59 bp):
GGCTTGATTTATAAAAACAAGGTCTCAATACCTCATTTTCTAAAACCACTTGACTATAG
Found at i:45552561 original size:43 final size:43
Alignment explanation
Indices: 45552411--45552569 Score: 134
Period size: 43 Copynumber: 3.7 Consensus size: 43
45552401 TATGTGTTAT
*
45552411 CATGGAAGACCACGTCTGGGATGTTGGCATC-A-ACTTATGATTTA
1 CATGTAAGACCACGTCTGGGATGTTGGCATCGATA-TT-TGA-TTA
* ** * *
45552455 CATGTAAGACCATGTCTGGGACATCGGTATCG-TATTTGATCT-
1 CATGTAAGACCACGTCTGGGATGTTGGCATCGATATTTGAT-TA
* *
45552497 CGTGTAAGACC-CTGTCCGGGATAG-TGGCATCGATATTTGATTA
1 CATGTAAGACCAC-GTCTGGGAT-GTTGGCATCGATATTTGATTA
45552540 CATAG-AAGACCACGTCTGGGATGTTGGCAT
1 CAT-GTAAGACCACGTCTGGGATGTTGGCAT
45552570 TGTATGAGCT
Statistics
Matches: 90, Mismatches: 15, Indels: 21
0.71 0.12 0.17
Matches are distributed among these distances:
42 26 0.29
43 34 0.38
44 29 0.32
45 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (43 bp):
CATGTAAGACCACGTCTGGGATGTTGGCATCGATATTTGATTA
Found at i:45566253 original size:42 final size:43
Alignment explanation
Indices: 45566150--45566301 Score: 145
Period size: 43 Copynumber: 3.5 Consensus size: 43
45566140 ATATGTGTTA
* * *
45566150 TCGTGTAAGAACAC-GTCTGGAAC-GTTGGCATCGACT-TATGATT
1 TCGTGTAAG-ACCCTGTCTGGGACAG-TGGCATCGA-TATTTGATT
* *
45566193 TACGTGTAAGACCATGTCTGGGACA-TCTGCATCG-TATTTGATT
1 T-CGTGTAAGACCCTGTCTGGGACAGT-GGCATCGATATTTGATT
45566236 TCGTGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGATT
1 TCGTGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGATT
* *
45566279 ACATGTAAGACCAC-GTCTGGGAC
1 TCGTGTAAGACC-CTGTCTGGGAC
45566302 GTTGCCATTG
Statistics
Matches: 92, Mismatches: 9, Indels: 16
0.79 0.08 0.14
Matches are distributed among these distances:
42 29 0.32
43 40 0.43
44 23 0.25
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (43 bp):
TCGTGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGATT
Found at i:45567950 original size:39 final size:40
Alignment explanation
Indices: 45567888--45568002 Score: 160
Period size: 39 Copynumber: 2.9 Consensus size: 40
45567878 TCGGATATAG
* *
45567888 TACCAGCACTAAGCCTGCGGGATTTAACTCGAATATACAT
1 TACCAGCACGAAGCCTGCGGGATTTAACCCGAATATACAT
* * *
45567928 TACCAGCACGAAGCTTAC-GGATTTAACCCGGATATACAT
1 TACCAGCACGAAGCCTGCGGGATTTAACCCGAATATACAT
* *
45567967 TACCAGCATGAAGCCTGCGGGATTTAACCCGGATAT
1 TACCAGCACGAAGCCTGCGGGATTTAACCCGAATAT
45568003 TTAATATATC
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
39 34 0.52
40 32 0.48
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.23
Consensus pattern (40 bp):
TACCAGCACGAAGCCTGCGGGATTTAACCCGAATATACAT
Found at i:45575946 original size:40 final size:40
Alignment explanation
Indices: 45575886--45576017 Score: 196
Period size: 40 Copynumber: 3.3 Consensus size: 40
45575876 CTGCGAAACG
* *
45575886 TTAAGCCCGGATAT--AGTACCAGCACTAAGCCTGCGGGAT
1 TTAA-CCCGGATATACATTACCAGCACGAAGCCTGCGGGAT
*
45575925 TTAACCCGGATATACATTACCAGCACGAAGCTTGCGGGAT
1 TTAACCCGGATATACATTACCAGCACGAAGCCTGCGGGAT
* *
45575965 TTAACTCGGATATACATTACCAGCACGAAGCCTGCGAGAT
1 TTAACCCGGATATACATTACCAGCACGAAGCCTGCGGGAT
45576005 TTAACCCGGATAT
1 TTAACCCGGATAT
45576018 TTAATATATC
Statistics
Matches: 84, Mismatches: 7, Indels: 3
0.89 0.07 0.03
Matches are distributed among these distances:
38 9 0.11
39 4 0.05
40 71 0.85
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.23
Consensus pattern (40 bp):
TTAACCCGGATATACATTACCAGCACGAAGCCTGCGGGAT
Found at i:45579779 original size:40 final size:35
Alignment explanation
Indices: 45579678--45579805 Score: 114
Period size: 35 Copynumber: 3.5 Consensus size: 35
45579668 CATTGAAATG
* * * *
45579678 CCATACCTACATTTTACAACTCGGTATGGGA-AATG
1 CCATACCTACATTTCACAACTCAGTAT-GGACGATA
* ** * *
45579713 CCATACTTACATTTCTTAACTTAGTATGGATTTGGTAATA
1 CCATACCTACATTTCACAACTCAGTATGGA---CG--ATA
45579753 CCATACCTACATTTCACAACTCAGTATGGACGATA
1 CCATACCTACATTTCACAACTCAGTATGGACGATA
45579788 CCATACCTACATTTCACA
1 CCATACCTACATTTCACA
45579806 CTTTGCCATG
Statistics
Matches: 74, Mismatches: 13, Indels: 12
0.75 0.13 0.12
Matches are distributed among these distances:
34 3 0.04
35 42 0.57
37 1 0.01
40 28 0.38
ACGTcount: A:0.32, C:0.24, G:0.12, T:0.32
Consensus pattern (35 bp):
CCATACCTACATTTCACAACTCAGTATGGACGATA
Found at i:45587637 original size:20 final size:20
Alignment explanation
Indices: 45587612--45587718 Score: 180
Period size: 20 Copynumber: 5.3 Consensus size: 20
45587602 GTTTTGATAT
45587612 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
45587632 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
45587652 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
45587672 ACATGATATGTACGATATGC
1 ACATGATATGTATGATATGC
45587692 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
45587712 ATATGAT
1 ACATGAT
45587719 GTAATCATAA
Statistics
Matches: 83, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
20 81 0.98
21 2 0.02
ACGTcount: A:0.36, C:0.10, G:0.20, T:0.35
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:45587646 original size:9 final size:9
Alignment explanation
Indices: 45587634--45587710 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
45587624 TGATATGCAC
45587634 ATGATATGT
1 ATGATATGT
*
45587643 ATGATATGCAC
1 ATGATATG--T
45587654 ATGATATGT
1 ATGATATGT
*
45587663 ATGATATGCAC
1 ATGATATG--T
45587674 ATGATATGT
1 ATGATATGT
* *
45587683 ACGATATGCAC
1 ATGATATG--T
45587694 ATGATATGT
1 ATGATATGT
45587703 ATGATATG
1 ATGATATG
45587711 CATATGATGT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:45587827 original size:25 final size:26
Alignment explanation
Indices: 45587767--45587827 Score: 65
Period size: 25 Copynumber: 2.4 Consensus size: 26
45587757 GGAGGAAGTG
45587767 CAAAAG-GGCTTATGCCCCAGTTTAC
1 CAAAAGAGGCTTATGCCCCAGTTTAC
* *
45587792 CAAAA-AGGGCTTTTGCCCCAG-TTAT
1 CAAAAGA-GGCTTATGCCCCAGTTTAC
*
45587817 TAAAAGAGGCT
1 CAAAAGAGGCT
45587828 AGGCCTCCAG
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
25 16 0.53
26 14 0.47
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (26 bp):
CAAAAGAGGCTTATGCCCCAGTTTAC
Found at i:45588071 original size:31 final size:31
Alignment explanation
Indices: 45588036--45588137 Score: 96
Period size: 31 Copynumber: 3.1 Consensus size: 31
45588026 CGTTTACAGT
45588036 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
45588067 AAAGGCTTCGACCCAGTGTTACGAAATATGAAATATGA
1 AAAGGCTTCGGCCCA--G-T----AATATGAAATATGA
* ** *
45588105 AAAGGCTTCAGCCCAGTGTTACGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
45588136 AA
1 AA
45588138 TATCAAAAGC
Statistics
Matches: 58, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
31 27 0.47
33 1 0.02
34 1 0.02
35 1 0.02
36 1 0.02
38 27 0.47
ACGTcount: A:0.39, C:0.17, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:45588104 original size:38 final size:39
Alignment explanation
Indices: 45588053--45588151 Score: 168
Period size: 38 Copynumber: 2.6 Consensus size: 39
45588043 TCGGCCCAGT
45588053 AATATGAAATATGAAAAGGCTTCGA-CCCAGTGTTACGA
1 AATATGAAATATGAAAAGGCTTCGAGCCCAGTGTTACGA
45588091 AATATGAAATATGAAAAGGCTTC-AGCCCAGTGTTACGA
1 AATATGAAATATGAAAAGGCTTCGAGCCCAGTGTTACGA
*
45588129 AATATGAAATATCAAAA-GCTTCG
1 AATATGAAATATGAAAAGGCTTCG
45588152 GCCTAGTATA
Statistics
Matches: 58, Mismatches: 1, Indels: 4
0.92 0.02 0.06
Matches are distributed among these distances:
37 6 0.10
38 52 0.90
ACGTcount: A:0.41, C:0.15, G:0.19, T:0.24
Consensus pattern (39 bp):
AATATGAAATATGAAAAGGCTTCGAGCCCAGTGTTACGA
Found at i:45594502 original size:40 final size:40
Alignment explanation
Indices: 45594225--45594488 Score: 349
Period size: 40 Copynumber: 6.7 Consensus size: 40
45594215 TTGAATGATG
* * * *
45594225 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
45594265 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
45594305 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
45594344 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
45594383 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
45594423 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
45594464 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
45594489 AACGAGGAGC
Statistics
Matches: 205, Mismatches: 14, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
39 74 0.36
40 121 0.59
41 10 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:45594506 original size:80 final size:77
Alignment explanation
Indices: 45594226--45594521 Score: 289
Period size: 80 Copynumber: 3.7 Consensus size: 77
45594216 TGAATGATGT
* * **
45594226 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAG-GACTA-ATCCGGGTTAAG-TCCCGAAGGCATT
*
45594289 TGTGCGAGA-TACTAATT
62 TGTGCGA-ATTACTAA-A
* *
45594306 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-CCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-GACTAA-TCCGGGTTAAGTCCCGAAGGCATTTG
*
45594369 TGCGAGTTACTAAA
64 TGCGAATTACTAAA
* *
45594383 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-GACT-AATCCGGGTTAAGTCCCGAAGGCATTT
45594448 GTGCGAATTACTATAA
63 GTGCGAATTACTA-AA
* ** * *
45594464 CCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGGA-CTA-ATCCGGGTTAAGTCCCGAAGG
45594522 TACGTGATTT
Statistics
Matches: 187, Mismatches: 18, Indels: 23
0.82 0.08 0.10
Matches are distributed among these distances:
78 34 0.18
79 74 0.40
80 77 0.41
81 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (77 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGGACTAATCCGGGTTAAGTCCCGAAGGCATTTGTG
CGAATTACTAAA
Found at i:45597839 original size:20 final size:20
Alignment explanation
Indices: 45597814--45597880 Score: 118
Period size: 20 Copynumber: 3.4 Consensus size: 20
45597804 GTTTTGATAT
45597814 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
45597834 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
45597854 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
45597874 ACATGAT
1 ACATGAT
45597881 GTAATCATAA
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
20 44 0.96
21 2 0.04
ACGTcount: A:0.36, C:0.10, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:45597841 original size:11 final size:11
Alignment explanation
Indices: 45597825--45597880 Score: 66
Period size: 11 Copynumber: 5.5 Consensus size: 11
45597815 CATGATTGAT
45597825 ATGATATGCAC
1 ATGATATGCAC
*
45597836 ATGATATG--T
1 ATGATATGCAC
45597845 ATGATATGCAC
1 ATGATATGCAC
*
45597856 ATGATATG--T
1 ATGATATGCAC
45597865 ATGATATGCAC
1 ATGATATGCAC
45597876 ATGAT
1 ATGAT
45597881 GTAATCATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.34
Consensus pattern (11 bp):
ATGATATGCAC
Done.