Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 141 of 255
Found at i:45598002 original size:26 final size:26
Alignment explanation
Indices: 45597930--45597991 Score: 124
Period size: 26 Copynumber: 2.4 Consensus size: 26
45597920 GAGGAAGTGC
45597930 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
45597956 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
45597982 AAAAGGGCTT
1 AAAAGGGCTT
45597992 TTTCCCTAGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.23
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:45602712 original size:26 final size:24
Alignment explanation
Indices: 45602683--45602772 Score: 103
Period size: 23 Copynumber: 3.8 Consensus size: 24
45602673 GGACTCATCA
* *
45602683 CAGCTCATATGAGCTTACTGATATAT
1 CAGCTCGTAAGAGCTTACTGAT-T-T
*
45602709 CAGCTCGTACGAGCTTACT-ATTT
1 CAGCTCGTAAGAGCTTACTGATTT
*
45602732 CAGCTCGTAAGAGCTTGCTGA-TT
1 CAGCTCGTAAGAGCTTACTGATTT
*
45602755 CAGCTCGTTAGAGCTTAC
1 CAGCTCGTAAGAGCTTAC
45602773 CGTTTCAACT
Statistics
Matches: 57, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
23 36 0.63
24 2 0.04
25 2 0.04
26 17 0.30
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.32
Consensus pattern (24 bp):
CAGCTCGTAAGAGCTTACTGATTT
Found at i:45602738 original size:23 final size:23
Alignment explanation
Indices: 45602683--45602790 Score: 96
Period size: 23 Copynumber: 4.5 Consensus size: 23
45602673 GGACTCATCA
*
45602683 CAGCTCATATGAGCTTACTGATATAT
1 CAGCTCGTA-GAGCTTACTGAT-T-T
45602709 CAGCTCGTACGAGCTTACT-ATTT
1 CAGCTCGTA-GAGCTTACTGATTT
*
45602732 CAGCTCGTAAGAGCTTGCTGA-TT
1 CAGCTCGT-AGAGCTTACTGATTT
*
45602755 CAGCTCGTTAGAGCTTACCG-TTT
1 CAGCTCG-TAGAGCTTACTGATTT
*
45602778 CAACTCAGTAGAG
1 CAGCTC-GTAGAG
45602791 TTTGTTGTCC
Statistics
Matches: 71, Mismatches: 6, Indels: 13
0.79 0.07 0.14
Matches are distributed among these distances:
23 47 0.66
24 5 0.07
25 2 0.03
26 17 0.24
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.31
Consensus pattern (23 bp):
CAGCTCGTAGAGCTTACTGATTT
Found at i:45607916 original size:37 final size:37
Alignment explanation
Indices: 45607866--45607944 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
45607856 TCATTACGAA
* * *
45607866 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
45607903 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
45607940 GTCTT
1 GTCTT
45607945 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:45608140 original size:47 final size:47
Alignment explanation
Indices: 45608064--45608427 Score: 586
Period size: 47 Copynumber: 7.7 Consensus size: 47
45608054 CCTTCGGGAC
* * * * * * *
45608064 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
*
45608111 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
*
45608158 TATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
45608205 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
45608252 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
45608299 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
45608346 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
* * *
45608395 TATCTCATATATGCA-TGTTCACATCCATCACAT
1 TATCACATATATACACT-TTCACATTCATCACAT
45608428 AGAATCCTAA
Statistics
Matches: 300, Mismatches: 14, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
46 1 0.00
47 253 0.84
49 46 0.15
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
Found at i:45611641 original size:40 final size:40
Alignment explanation
Indices: 45611609--45611992 Score: 325
Period size: 40 Copynumber: 9.6 Consensus size: 40
45611599 CCAGCATGAT
* * * *
45611609 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * *
45611649 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
45611689 TGCTCTCCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
45611729 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
45611769 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * * * * * **
45611809 TGATTTTCGGGACTTAGCCCGGTTATAGTAACTCGCATAAA
1 TGCTCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAA
* * ** * * *
45611850 TGC-CTTCGGGACTTAACCCGAATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAA
* * * *
45611890 TGC-CTTCGGG-CTTAGCCCGGAATTA-GTAACTCGCACAAA
1 TGCTCTTCGGGACTTAGCCCGG-A-TACATCACTAGCACGAA
* **
45611929 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGGA-CTTAGCCCGGATA-CATCAC-TAGCACGAA
*
45611969 AGC-CTTCGGGACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATA
45611993 TCATTCGAAT
Statistics
Matches: 291, Mismatches: 44, Indels: 18
0.82 0.12 0.05
Matches are distributed among these distances:
38 4 0.01
39 28 0.10
40 238 0.82
41 21 0.07
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:45611974 original size:79 final size:81
Alignment explanation
Indices: 45611814--45611990 Score: 211
Period size: 79 Copynumber: 2.2 Consensus size: 81
45611804 ATGAATGATT
* * *
45611814 TTCGGGACTTAGCCCGG-TTATAGTAACTCGCATAAATGCCTTCGGGACTTAACCCGAATTTAGT
1 TTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGAATATAGT
* *
45611878 AACTCGCACCAATGCC
66 AACTAGCACCAAAGCC
** * *
45611894 TTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGG
1 TTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGAATATAG
*
45611956 TCACTTAGCA-CAAAGCC
65 TAAC-TAGCACCAAAGCC
45611973 TTCGGGACTTAGCCCGGA
1 TTCGGGACTTAGCCCGGA
45611991 TATCATTCGA
Statistics
Matches: 83, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
78 3 0.04
79 58 0.70
80 22 0.27
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
TTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGAATATAGT
AACTAGCACCAAAGCC
Found at i:45613897 original size:37 final size:37
Alignment explanation
Indices: 45613847--45613925 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
45613837 TTATTACGAA
* * *
45613847 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
* *
45613884 GTCTTCCCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
45613921 GTCTT
1 GTCTT
45613926 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:45614265 original size:49 final size:47
Alignment explanation
Indices: 45614044--45614315 Score: 411
Period size: 47 Copynumber: 5.7 Consensus size: 47
45614034 CCCTTCGGGA
* * * * * *
45614044 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
45614091 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45614138 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45614185 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45614232 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
45614281 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
45614316 AGAATCCTAA
Statistics
Matches: 209, Mismatches: 13, Indels: 6
0.92 0.06 0.03
Matches are distributed among these distances:
46 1 0.00
47 162 0.78
49 46 0.22
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:45616668 original size:6 final size:6
Alignment explanation
Indices: 45616659--45616758 Score: 96
Period size: 6 Copynumber: 16.3 Consensus size: 6
45616649 AACTAGAACT
* *
45616659 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC
* * * *
45616708 AGAATC AGAATC AGTATC AGGTAA-C AAAATC AAAATC AGAATC AGTATC
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC AGAATC
45616757 AG
1 AG
45616759 GTAACAGAAT
Statistics
Matches: 79, Mismatches: 9, Indels: 12
0.79 0.09 0.12
Matches are distributed among these distances:
5 3 0.04
6 69 0.87
7 5 0.06
8 2 0.03
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:45616708 original size:31 final size:31
Alignment explanation
Indices: 45616670--45616768 Score: 153
Period size: 31 Copynumber: 3.2 Consensus size: 31
45616660 GAATCAGAAT
* * *
45616670 CAGAATCAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGAATCAGTATCAGGTAA
45616701 CAGAATCAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGTATCAGGTAA
* *
45616732 CAAAATCAAAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGTATCAGGTAA
45616763 CAGAAT
1 CAGAAT
45616769 AAAAAATTAG
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 62 1.00
ACGTcount: A:0.47, C:0.15, G:0.18, T:0.19
Consensus pattern (31 bp):
CAGAATCAGAATCAGAATCAGTATCAGGTAA
Found at i:45617194 original size:22 final size:22
Alignment explanation
Indices: 45617146--45617204 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 22
45617136 GTAAATATGT
45617146 TTGGCACGAAGCCATAGTTAAG
1 TTGGCACGAAGCCATAGTTAAG
* * *
45617168 ATGGCACGAAGCCATATTTAGG
1 TTGGCACGAAGCCATAGTTAAG
45617190 TTGGCAC-AGAGCCAT
1 TTGGCACGA-AGCCAT
45617205 CGATAACGTG
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
21 1 0.03
22 31 0.97
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (22 bp):
TTGGCACGAAGCCATAGTTAAG
Found at i:45617581 original size:27 final size:27
Alignment explanation
Indices: 45617551--45617799 Score: 331
Period size: 27 Copynumber: 9.3 Consensus size: 27
45617541 GGGGTAAAAT
* * *
45617551 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
45617578 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
45617605 AGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
45617632 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
45617659 GGTAATTCTACCCTACAAGGGTA-TTC
1 GGTAATTCTACCCTACAAGGGTATTTC
45617685 TGGTAATTCTACCCTAC-AGGGTATTTC
1 -GGTAATTCTACCCTACAAGGGTATTTC
* * *
45617712 GGTAATTCTACCCTACACGTGCATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
45617739 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
45617766 GGTAATTCTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
45617793 AGTAATT
1 GGTAATT
45617800 TCACGAATCA
Statistics
Matches: 199, Mismatches: 20, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
26 25 0.13
27 174 0.87
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:45617762 original size:107 final size:109
Alignment explanation
Indices: 45617551--45617799 Score: 389
Period size: 107 Copynumber: 2.3 Consensus size: 109
45617541 GGGGTAAAAT
* *
45617551 GGTAATTTTACCCCACAAGGGTA-TCTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTA
1 GGTAATTCTACCCTACAAGGGTATTCTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTA
* * *
45617615 CCCTACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTC
66 CCCTACACGGGCATTTCAGTAATTCTACCCTACAGGGGTATTTC
*
45617659 GGTAATTCTACCCTACAAGGGTATTCT-GGTAATTCTACCCTACA-GGGTATTTCGGTAATTCTA
1 GGTAATTCTACCCTACAAGGGTATTCTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTA
*
45617722 CCCTACACGTGCATTTCAGTAATTCTACCCTACAGGGGTATTTC
66 CCCTACACGGGCATTTCAGTAATTCTACCCTACAGGGGTATTTC
* *
45617766 GGTAATTCTACCCTATAAGGGTATT-TCAGTAATT
1 GGTAATTCTACCCTACAAGGGTATTCTCGGTAATT
45617800 TCACGAATCA
Statistics
Matches: 130, Mismatches: 9, Indels: 5
0.90 0.06 0.03
Matches are distributed among these distances:
106 1 0.01
107 88 0.68
108 38 0.29
109 3 0.02
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.34
Consensus pattern (109 bp):
GGTAATTCTACCCTACAAGGGTATTCTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTA
CCCTACACGGGCATTTCAGTAATTCTACCCTACAGGGGTATTTC
Found at i:45617815 original size:134 final size:135
Alignment explanation
Indices: 45617550--45617826 Score: 380
Period size: 134 Copynumber: 2.1 Consensus size: 135
45617540 AGGGGTAAAA
* * *
45617550 TGGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTA
1 TGGTAATTCTACCCCACAAGGGTATCTCGGTAATTCTACCCTACACGGGCATTTCAGTAATTCTA
* * * **
45617615 CCCTACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGG
66 CCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACAATACAAGGG
45617680 TATTC
131 TATTC
* * *
45617685 TGGTAATTCTACCCTAC-AGGGTATTTCGGTAATTCTACCCTACACGTGCATTTCAGTAATTCTA
1 TGGTAATTCTACCCCACAAGGGTATCTCGGTAATTCTACCCTACACGGGCATTTCAGTAATTCTA
* * *
45617749 CCCTACAGGGGTATTTCGGTAATTCTACCCTATAAGGGTATTTCAGTAATT-TCACGAAT-CAGG
66 CCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCAGTAATTCT-AC-AATACAAG
*
45617812 GGTATTT
129 GGTATTC
45617819 TGGTAATT
1 TGGTAATT
45617827 TTACAAACTA
Statistics
Matches: 125, Mismatches: 15, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
133 1 0.01
134 108 0.86
135 16 0.13
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (135 bp):
TGGTAATTCTACCCCACAAGGGTATCTCGGTAATTCTACCCTACACGGGCATTTCAGTAATTCTA
CCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACAATACAAGGG
TATTC
Found at i:45617826 original size:54 final size:54
Alignment explanation
Indices: 45617551--45617799 Score: 367
Period size: 54 Copynumber: 4.6 Consensus size: 54
45617541 GGGGTAAAAT
* * * *
45617551 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
* * *
45617605 AGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
*
45617659 GGTAATTCTACCCTACAAGGGTA-TTCTGGTAATTCTACCCTACA-GGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC-AGTAATTCTACCCTACAGGGGTATTTC
* * *
45617712 GGTAATTCTACCCTACACGTGCATTTCAGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
*
45617766 GGTAATTCTACCCTATAAGGGTATTTCAGTAATT
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATT
45617800 TCACGAATCA
Statistics
Matches: 173, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
53 47 0.27
54 126 0.73
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.34
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
Found at i:45618077 original size:54 final size:54
Alignment explanation
Indices: 45617811--45618070 Score: 421
Period size: 54 Copynumber: 4.8 Consensus size: 54
45617801 CACGAATCAG
*
45617811 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
* *
45617865 GGGTATTCTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
* * * *
45617919 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACTAA
1 GGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
* * *
45617973 AGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
*
45618027 GGGTATTTTAGTAATTTTACAAACTAGGGGTGTTTTGGTAATTT
1 GGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTT
45618071 GGTAAACTAA
Statistics
Matches: 190, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 190 1.00
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (54 bp):
GGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
Found at i:45618079 original size:27 final size:27
Alignment explanation
Indices: 45617784--45618070 Score: 340
Period size: 27 Copynumber: 10.6 Consensus size: 27
45617774 TACCCTATAA
** * * *
45617784 GGGTATTTCAGTAATTTCACGAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
45617811 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
45617838 GGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
45617865 GGGTATTCTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
** *
45617892 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
45617919 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * * *
45617946 GGGTATTTTGGTGATTTTATAAACTAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
45617973 AGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
45618000 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
45618027 GGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
45618054 GGGTGTTTTGGTAATTT
1 GGGTATTTTGGTAATTT
45618071 GGTAAACTAA
Statistics
Matches: 215, Mismatches: 45, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 215 1.00
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:45619330 original size:6 final size:6
Alignment explanation
Indices: 45619311--45619460 Score: 92
Period size: 6 Copynumber: 24.3 Consensus size: 6
45619301 AACTAGAACT
* * * * *
45619311 AGAATC AAAATC AGAATC AGAATA AG-GTGAC AGAATC AGAATA AG-GTGAC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAAT--C
* *
45619361 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC
* * * * *
45619410 AGAATC AGAATC AGTATC AGGTAA-C AGAATC AAAATT AAAATC AGTATC
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC AGAATC
45619459 AG
1 AG
45619461 GTAACAGAAT
Statistics
Matches: 111, Mismatches: 21, Indels: 24
0.71 0.13 0.15
Matches are distributed among these distances:
5 5 0.05
6 93 0.84
7 9 0.08
8 4 0.04
ACGTcount: A:0.49, C:0.13, G:0.19, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:45619346 original size:19 final size:19
Alignment explanation
Indices: 45619322--45619414 Score: 114
Period size: 19 Copynumber: 4.6 Consensus size: 19
45619312 GAATCAAAAT
45619322 CAGAATCAGAATAAGGTGA
1 CAGAATCAGAATAAGGTGA
45619341 CAGAATCAGAATAAGGTGA
1 CAGAATCAGAATAAGGTGA
* *
45619360 CAGAATCAGAATCAGAATCAGAA
1 CAGAATCAGAATAAG-GT--G-A
*
45619383 TCAGAATCAGAATTAGGTGA
1 -CAGAATCAGAATAAGGTGA
45619403 CAGAATCAGAAT
1 CAGAATCAGAAT
45619415 CAGAATCAGT
Statistics
Matches: 65, Mismatches: 4, Indels: 10
0.82 0.05 0.13
Matches are distributed among these distances:
19 45 0.69
20 2 0.03
21 1 0.02
22 1 0.02
23 2 0.03
24 14 0.22
ACGTcount: A:0.47, C:0.13, G:0.23, T:0.17
Consensus pattern (19 bp):
CAGAATCAGAATAAGGTGA
Found at i:45619348 original size:31 final size:31
Alignment explanation
Indices: 45619311--45619483 Score: 163
Period size: 31 Copynumber: 5.5 Consensus size: 31
45619301 AACTAGAACT
* *
45619311 AGAATCAAAATCAGAATCAGAATAAGGTGAC
1 AGAATCAAAATCAGAATCAGAATCAGGTAAC
* * *
45619342 AGAATCAGAATAAG-GTGACAGAATCA-G-AATC
1 AGAATCAAAATCAGAAT--CAGAATCAGGTAA-C
* * *
45619373 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAAAATCAGAATCAGAATCAGGTAAC
* *
45619404 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGAATCAGGTAAC
* * *
45619435 AGAATCAAAATTAAAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGAATCAGGTAAC
*
45619466 AGAATAAAAAATCAGAAT
1 AGAAT-CAAAATCAGAAT
45619484 GTAAATGCAA
Statistics
Matches: 117, Mismatches: 18, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
30 9 0.08
31 90 0.77
32 18 0.15
ACGTcount: A:0.50, C:0.13, G:0.18, T:0.18
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGAATCAGGTAAC
Found at i:45619350 original size:25 final size:23
Alignment explanation
Indices: 45619319--45619420 Score: 96
Period size: 25 Copynumber: 4.7 Consensus size: 23
45619309 CTAGAATCAA
45619319 AATCAGAATCAGAATAAGGT--G
1 AATCAGAATCAGAATAAGGTCAG
45619340 -A-CAGAATCAGAATAAGGTGACAG
1 AATCAGAATCAGAATAAGGT--CAG
45619363 AATCAGAATCAG---AA--TCAG
1 AATCAGAATCAGAATAAGGTCAG
*
45619381 AATCAGAATCAGAATTAGGTGACAG
1 AATCAGAATCAGAATAAGGT--CAG
45619406 AATCAGAATCAGAAT
1 AATCAGAATCAGAAT
45619421 CAGTATCAGG
Statistics
Matches: 67, Mismatches: 1, Indels: 22
0.74 0.01 0.24
Matches are distributed among these distances:
18 15 0.22
19 17 0.25
20 2 0.03
21 1 0.01
22 2 0.03
23 2 0.03
24 1 0.01
25 27 0.40
ACGTcount: A:0.48, C:0.13, G:0.22, T:0.18
Consensus pattern (23 bp):
AATCAGAATCAGAATAAGGTCAG
Found at i:45619401 original size:43 final size:42
Alignment explanation
Indices: 45619319--45619429 Score: 159
Period size: 43 Copynumber: 2.5 Consensus size: 42
45619309 CTAGAATCAA
* *
45619319 AATCAGAATCAGAATAAGGTGACAGAATCAGAATAAGGTGACAG
1 AATCAGAATCAGAATCAGAT--CAGAATCAGAATAAGGTGACAG
*
45619363 AATCAGAATCAGAATCAGAATCAGAATCAGAATTAGGTGACAG
1 AATCAGAATCAGAATCAG-ATCAGAATCAGAATAAGGTGACAG
45619406 AATCAGAATCAGAATCAGTATCAG
1 AATCAGAATCAGAATCAG-ATCAG
45619430 GTAACAGAAT
Statistics
Matches: 62, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
43 44 0.71
44 17 0.27
45 1 0.02
ACGTcount: A:0.47, C:0.14, G:0.22, T:0.18
Consensus pattern (42 bp):
AATCAGAATCAGAATCAGATCAGAATCAGAATAAGGTGACAG
Found at i:45619438 original size:62 final size:61
Alignment explanation
Indices: 45619311--45619470 Score: 180
Period size: 62 Copynumber: 2.6 Consensus size: 61
45619301 AACTAGAACT
*
45619311 AGAATCAAAATCAGAATCAGAATAAGGTGACAGAATCAGAATAAGGTGACAGAATCAGAATC
1 AGAATCAAAATCAGAATCAGAATAAGGTGACAGAATCAGAATAAGAT-ACAGAATCAGAATC
* * * *
45619373 AGAATCAGAATCAGAATCAGAATTAGGTGACAGAATCAGAATCAGA-ATCAGTATCAGGTAA-C
1 AGAATCAAAATCAGAATCAGAATAAGGTGACAGAATCAGAATAAGATA-CAGAATCA-G-AATC
* * * * *
45619435 AGAATCAAAATTAAAATCAGTATCAGGTAACAGAAT
1 AGAATCAAAATCAGAATCAGAATAAGGTGACAGAAT
45619471 AAAAAATCAG
Statistics
Matches: 84, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
60 1 0.01
61 7 0.08
62 74 0.88
63 2 0.02
ACGTcount: A:0.49, C:0.13, G:0.19, T:0.19
Consensus pattern (61 bp):
AGAATCAAAATCAGAATCAGAATAAGGTGACAGAATCAGAATAAGATACAGAATCAGAATC
Found at i:45620285 original size:27 final size:27
Alignment explanation
Indices: 45620255--45620423 Score: 225
Period size: 27 Copynumber: 6.3 Consensus size: 27
45620245 GGGGTAAAAT
* *
45620255 GGTAATTTTACACC-ACAAGGGTATCTC
1 GGTAATTCTAC-CCTACAAGGGTATTTC
*
45620282 GGTAATTCTACCCTACAGGGGTA-TTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
45620308 TGGTAATTCTACCCTATAGGGGTATTTC
1 -GGTAATTCTACCCTACAAGGGTATTTC
* *
45620336 GGTAATTCTACCCTAGAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
45620363 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
45620390 GGTAATTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
45620417 GGTAATT
1 GGTAATT
45620424 TCAAAAATAT
Statistics
Matches: 127, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
26 4 0.03
27 120 0.94
28 3 0.02
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:45620437 original size:27 final size:27
Alignment explanation
Indices: 45620352--45620667 Score: 352
Period size: 27 Copynumber: 11.7 Consensus size: 27
45620342 TCTACCCTAG
* **
45620352 AAGGGTATTTTGGTAATTCTACCCTA-C
1 AAGGGTATTTTGGTAATTTTA-CAAACC
* * * **
45620379 AGGGGTATTTCGGTAATTCTACCCTA-C
1 AAGGGTATTTTGGTAATTTTA-CAAACC
* **
45620406 AAGGGTATTTTGGTAATTTCA-AAAAT
1 AAGGGTATTTTGGTAATTTTACAAACC
*
45620432 ATAGGGTATTTTGGTAATTTTATAAACC
1 A-AGGGTATTTTGGTAATTTTACAAACC
* * *
45620460 AAGGGTATTCTAGTAATTTTACAAACT
1 AAGGGTATTTTGGTAATTTTACAAACC
* **
45620487 AGGGGTATTTTGGTAATTTTGTAAACC
1 AAGGGTATTTTGGTAATTTTACAAACC
45620514 AAGGGTATTTTGGTAATTTTACAAACC
1 AAGGGTATTTTGGTAATTTTACAAACC
* *
45620541 AGGGGTATTTTGGTAATTTTATAAACC
1 AAGGGTATTTTGGTAATTTTACAAACC
45620568 AAGGGTATTTTGGTAATTTTACAAACC
1 AAGGGTATTTTGGTAATTTTACAAACC
* *
45620595 -AGGTGTATTTTGGTCATTTTATAAACC
1 AAGG-GTATTTTGGTAATTTTACAAACC
*
45620622 AAGGGTATTTTAGTAATTTTACAAACC
1 AAGGGTATTTTGGTAATTTTACAAACC
*
45620649 AGGGGTATTTTGGTAATTT
1 AAGGGTATTTTGGTAATTT
45620668 GGTAAACTAA
Statistics
Matches: 248, Mismatches: 36, Indels: 10
0.84 0.12 0.03
Matches are distributed among these distances:
25 1 0.00
26 4 0.02
27 236 0.95
28 7 0.03
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTACAAACC
Found at i:45620438 original size:81 final size:81
Alignment explanation
Indices: 45620271--45620450 Score: 238
Period size: 81 Copynumber: 2.2 Consensus size: 81
45620261 TTTACACCAC
* * * *
45620271 AAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTCTGGTAATTCTACCCTATAGGGGTATTTC
1 AAGGGTATTTTGGTAATTCTACCCTACAGGGGTATTCTGGTAATTCTACCCTACAAGGGTATTTC
* ***
45620336 GGTAATTCTACCCTAG
66 GGTAATTCAAAAATAG
45620352 AAGGGTATTTTGGTAATTCTACCCTACAGGGGTATT-TCGGTAATTCTACCCTACAAGGGTATTT
1 AAGGGTATTTTGGTAATTCTACCCTACAGGGGTATTCT-GGTAATTCTACCCTACAAGGGTATTT
*
45620416 TGGTAATTTCAAAAATA-
65 CGGTAA-TTCAAAAATAG
*
45620433 TAGGGTATTTTGGTAATT
1 AAGGGTATTTTGGTAATT
45620451 TTATAAACCA
Statistics
Matches: 87, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
80 1 0.01
81 80 0.92
82 6 0.07
ACGTcount: A:0.26, C:0.16, G:0.22, T:0.36
Consensus pattern (81 bp):
AAGGGTATTTTGGTAATTCTACCCTACAGGGGTATTCTGGTAATTCTACCCTACAAGGGTATTTC
GGTAATTCAAAAATAG
Found at i:45620450 original size:54 final size:54
Alignment explanation
Indices: 45620273--45620423 Score: 257
Period size: 54 Copynumber: 2.8 Consensus size: 54
45620263 TACACCACAA
* * *
45620273 GGGTATCTCGGTAATTCTACCCTACAGGGGTATTCTGGTAATTCTACCCTATAG
1 GGGTATTTCGGTAATTCTACCCTACAAGGGTATTTTGGTAATTCTACCCTATAG
* *
45620327 GGGTATTTCGGTAATTCTACCCTAGAAGGGTATTTTGGTAATTCTACCCTACAG
1 GGGTATTTCGGTAATTCTACCCTACAAGGGTATTTTGGTAATTCTACCCTATAG
45620381 GGGTATTTCGGTAATTCTACCCTACAAGGGTATTTTGGTAATT
1 GGGTATTTCGGTAATTCTACCCTACAAGGGTATTTTGGTAATT
45620424 TCAAAAATAT
Statistics
Matches: 91, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 91 1.00
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.36
Consensus pattern (54 bp):
GGGTATTTCGGTAATTCTACCCTACAAGGGTATTTTGGTAATTCTACCCTATAG
Found at i:45620463 original size:54 final size:54
Alignment explanation
Indices: 45620352--45620667 Score: 413
Period size: 54 Copynumber: 5.9 Consensus size: 54
45620342 TCTACCCTAG
* ** * * ***
45620352 AAGGGTATTTTGGTAATTCTACCCTA-CAGGGGTATTTCGGTAATTCTACCCTA-C
1 AAGGGTATTTTGGTAATTTTA-CAAACCAGGGGTATTTTGGTAATTTTA-TAAACC
* ** *
45620406 AAGGGTATTTTGGTAATTTCA-AAAATATAGGGTATTTTGGTAATTTTATAAACC
1 AAGGGTATTTTGGTAATTTTACAAACCA-GGGGTATTTTGGTAATTTTATAAACC
* * * *
45620460 AAGGGTATTCTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACC
1 AAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACC
45620514 AAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACC
1 AAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACC
* *
45620568 AAGGGTATTTTGGTAATTTTACAAACCAGGTGTATTTTGGTCATTTTATAAACC
1 AAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACC
*
45620622 AAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
1 AAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
45620668 GGTAAACTAA
Statistics
Matches: 232, Mismatches: 26, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
52 1 0.00
53 2 0.01
54 224 0.97
55 5 0.02
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.39
Consensus pattern (54 bp):
AAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACC
Found at i:45622637 original size:12 final size:12
Alignment explanation
Indices: 45622607--45622706 Score: 61
Period size: 12 Copynumber: 8.7 Consensus size: 12
45622597 AAGAAACATT
*
45622607 ATCAGAACTAGA
1 ATCAGAATTAGA
45622619 A-CTAGAATTAGA
1 ATC-AGAATTAGA
45622631 ATCAGAATTAGA
1 ATCAGAATTAGA
**
45622643 AT-A-AGGT-G-
1 ATCAGAATTAGA
*
45622651 A-CAGAATCAGA
1 ATCAGAATTAGA
*
45622662 ATCAGAATCAGA
1 ATCAGAATTAGA
45622674 ATCAGAATTAG-
1 ATCAGAATTAGA
* *
45622685 GTGACAGAATCAGA
1 AT--CAGAATTAGA
45622699 ATCAGAAT
1 ATCAGAAT
45622707 CAGTATCAGG
Statistics
Matches: 68, Mismatches: 10, Indels: 20
0.69 0.10 0.20
Matches are distributed among these distances:
8 2 0.03
9 2 0.03
10 3 0.04
11 4 0.06
12 47 0.69
13 9 0.13
14 1 0.01
ACGTcount: A:0.48, C:0.12, G:0.20, T:0.20
Consensus pattern (12 bp):
ATCAGAATTAGA
Found at i:45622661 original size:6 final size:6
Alignment explanation
Indices: 45622652--45622746 Score: 95
Period size: 6 Copynumber: 15.5 Consensus size: 6
45622642 AATAAGGTGA
* *
45622652 CAGAAT CAGAAT CAGAAT CAGAAT CAGAAT TAG-GT GACAGAAT CAGAAT
1 CAGAAT CAGAAT CAGAAT CAGAAT CAGAAT CAGAAT --CAGAAT CAGAAT
* * *
45622701 CAGAAT CAGTAT CAGGTAA- CAGAAT CAAAAT CAGAAT CAGTAT CAG
1 CAGAAT CAGAAT CA-G-AAT CAGAAT CAGAAT CAGAAT CAGAAT CAG
45622747 GTAACAGAAT
Statistics
Matches: 74, Mismatches: 9, Indels: 12
0.78 0.09 0.13
Matches are distributed among these distances:
5 3 0.04
6 64 0.86
7 5 0.07
8 2 0.03
ACGTcount: A:0.46, C:0.16, G:0.19, T:0.19
Consensus pattern (6 bp):
CAGAAT
Found at i:45622663 original size:31 final size:31
Alignment explanation
Indices: 45622658--45622756 Score: 153
Period size: 31 Copynumber: 3.2 Consensus size: 31
45622648 GTGACAGAAT
* *
45622658 CAGAATCAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGAATCAGAATCAGGTAA
*
45622689 CAGAATCAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGAATCAGGTAA
* *
45622720 CAGAATCAAAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGAATCAGGTAA
45622751 CAGAAT
1 CAGAAT
45622757 AAAAAATCAG
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 64 1.00
ACGTcount: A:0.46, C:0.15, G:0.19, T:0.19
Consensus pattern (31 bp):
CAGAATCAGAATCAGAATCAGAATCAGGTAA
Found at i:45622663 original size:37 final size:37
Alignment explanation
Indices: 45622622--45622715 Score: 152
Period size: 37 Copynumber: 2.5 Consensus size: 37
45622612 AACTAGAACT
* *
45622622 AGAATTAGAATCAGAATTAGAATAAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGAATAAGGTGACAGAATC
*
45622659 AGAATCAGAATCAGAATCAGAATTAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGAATAAGGTGACAGAATC
*
45622696 AGAATCAGAATCAGTATCAG
1 AGAATCAGAATCAGAATCAG
45622716 GTAACAGAAT
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 53 1.00
ACGTcount: A:0.47, C:0.12, G:0.21, T:0.20
Consensus pattern (37 bp):
AGAATCAGAATCAGAATCAGAATAAGGTGACAGAATC
Found at i:45622733 original size:37 final size:36
Alignment explanation
Indices: 45622622--45622746 Score: 134
Period size: 37 Copynumber: 3.6 Consensus size: 36
45622612 AACTAGAACT
* *
45622622 AGAATTAGAATCAGAATTAGAATAAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGAATAAGGT-ACAGAATC
*
45622659 AGAATCAGAATCAGAATCAGAATTAGGT---G-A-C
1 AGAATCAGAATCAGAATCAGAATAAGGTACAGAATC
* *
45622690 AGAATCAGAATCAGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGAATAAGGT-ACAGAATC
* *
45622727 AAAATCAGAATCAGTATCAG
1 AGAATCAGAATCAGAATCAG
45622747 GTAACAGAAT
Statistics
Matches: 75, Mismatches: 7, Indels: 12
0.80 0.07 0.13
Matches are distributed among these distances:
31 27 0.36
32 1 0.01
33 1 0.01
35 1 0.01
36 1 0.01
37 44 0.59
ACGTcount: A:0.47, C:0.13, G:0.20, T:0.20
Consensus pattern (36 bp):
AGAATCAGAATCAGAATCAGAATAAGGTACAGAATC
Found at i:45622952 original size:27 final size:27
Alignment explanation
Indices: 45622912--45622976 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
45622902 AGTAAGTTGA
* * *
45622912 GGCAAAGCCTCCAGTA-CAGATATTTGT
1 GGCAAAGCCACCAGAATCAGATA-ATGT
*
45622939 GGCATAGCCACCAGAATCAGATAATGT
1 GGCAAAGCCACCAGAATCAGATAATGT
45622966 GGCAAAGCCAC
1 GGCAAAGCCAC
45622977 TAAACAGAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 26 0.81
28 6 0.19
ACGTcount: A:0.34, C:0.25, G:0.23, T:0.18
Consensus pattern (27 bp):
GGCAAAGCCACCAGAATCAGATAATGT
Found at i:45623569 original size:27 final size:27
Alignment explanation
Indices: 45623539--45623758 Score: 307
Period size: 27 Copynumber: 8.1 Consensus size: 27
45623529 GGGGTAAAAT
* * * *
45623539 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
45623566 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
45623593 AGTTATTCTACCCTACAGGGGTACTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
45623620 GGTAATTCTACCCTACAGGGGTA-TTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
45623646 TAGTAATTCTACCCTACAGGGGTATTTC
1 -GGTAATTCTACCCTACAGGGGTATTTC
* * *
45623674 GGTAATTCTACCCTAGAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
45623701 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
45623728 GGTAATTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
45623755 GGTA
1 GGTA
45623759 GTTTCACAAA
Statistics
Matches: 172, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
26 3 0.02
27 166 0.97
28 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:45623777 original size:81 final size:79
Alignment explanation
Indices: 45623523--45623788 Score: 286
Period size: 81 Copynumber: 3.3 Consensus size: 79
45623513 GTCATTTAAC
*** * * * *
45623523 ACCCTAGGGGTAAAATGGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGT
1 ACCCTAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGT
*
45623588 ATTTCAGT-TATTCT
66 ATTTCGGTAT-TTCT
* * *
45623602 ACCCTACAGGGGTACTTCGGTAATTCTACCCTACAGGGGTA-TTCTAGTAATTCTACCCTACAGG
1 ACCCT--AGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTC-GGTAATTCTACCCTACAGG
*
45623666 GGTATTTCGGTAATTCT
63 GGTATTTCGGTATTTCT
*
45623683 ACCCTAGAAGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGG
1 ACCCTAG--GGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGG
*
45623748 GTATTTTGGTAGTTTC-
64 GTATTTCGGTA-TTTCT
**
45623764 ACAAATATGGGGTATTTTGGTAATT
1 AC-CCTA-GGGGTATTTTGGTAATT
45623789 TTATAAACCA
Statistics
Matches: 158, Mismatches: 19, Indels: 18
0.81 0.10 0.09
Matches are distributed among these distances:
79 7 0.04
80 2 0.01
81 140 0.89
82 8 0.05
83 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (79 bp):
ACCCTAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGT
ATTTCGGTATTTCT
Found at i:45623786 original size:54 final size:52
Alignment explanation
Indices: 45623557--45623842 Score: 189
Period size: 54 Copynumber: 5.3 Consensus size: 52
45623547 TACCCCACAA
* * ** ** *
45623557 GGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCAGT-TATTCTACCCTACAG
1 GGGTATTTCGGTAATTCTACCCTACAAGGGTATTTTGGTAT-TTC-A-CAAATAG
* * * * * ** *
45623611 GGGTACTTCGGTAATTCTACCCTACAGGGGTATTCTAGTAATTCTACCCTACAG
1 GGGTATTTCGGTAATTCTACCCTACAAGGGTATTTTGGTATTTC-A-CAAATAG
* * ** *
45623665 GGGTATTTCGGTAATTCTACCCTAGAAGGGTATTTTGGTAATTCTACCCTACAG
1 GGGTATTTCGGTAATTCTACCCTACAAGGGTATTTTGGTATTTC-A-CAAATAG
45623719 GGGTATTTCGGTAATTCTACCCTACAAGGGTATTTTGGTAGTTTCACAAATATG
1 GGGTATTTCGGTAATTCTACCCTACAAGGGTATTTTGGTA-TTTCACAAATA-G
* * *** * * *
45623773 GGGTATTTTGGTAATTTTA-TAAACCAAGGGTATTCTAGTAATTTTACAAACTAG
1 GGGTATTTCGGTAATTCTACCCTA-CAAGGGTATTTTGGT-ATTTCACAAA-TAG
*
45623827 GGGTATTTTGGTAATT
1 GGGTATTTCGGTAATT
45623843 TTGGAAACCA
Statistics
Matches: 203, Mismatches: 23, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
53 4 0.02
54 193 0.95
55 6 0.03
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.36
Consensus pattern (52 bp):
GGGTATTTCGGTAATTCTACCCTACAAGGGTATTTTGGTATTTCACAAATAG
Found at i:45624012 original size:27 final size:27
Alignment explanation
Indices: 45623690--45624005 Score: 314
Period size: 27 Copynumber: 11.7 Consensus size: 27
45623680 TCTACCCTAG
* **
45623690 AAGGGTATTTTGGTAATTCTACCCTA-C
1 AAGGGTATTTTGGTAATTTTA-CAAACC
* * * **
45623717 AGGGGTATTTCGGTAATTCTACCCTA-C
1 AAGGGTATTTTGGTAATTTTA-CAAACC
* * *
45623744 AAGGGTATTTTGGTAGTTTCACAAA-T
1 AAGGGTATTTTGGTAATTTTACAAACC
* *
45623770 ATGGGGTATTTTGGTAATTTTATAAACC
1 A-AGGGTATTTTGGTAATTTTACAAACC
* * *
45623798 AAGGGTATTCTAGTAATTTTACAAACT
1 AAGGGTATTTTGGTAATTTTACAAACC
* **
45623825 AGGGGTATTTTGGTAATTTTGGAAACC
1 AAGGGTATTTTGGTAATTTTACAAACC
*
45623852 AATGGTATTTTGGTAATTTTACAAACC
1 AAGGGTATTTTGGTAATTTTACAAACC
* ** *
45623879 AGGGGTATTTTCCTAATTTTATAAACC
1 AAGGGTATTTTGGTAATTTTACAAACC
* *
45623906 AAGGGTATTTTGATAAATTTACAAACC
1 AAGGGTATTTTGGTAATTTTACAAACC
* *
45623933 AAGGGTATTTTGGTGATTTTATAAACC
1 AAGGGTATTTTGGTAATTTTACAAACC
*
45623960 AAGGGTATTTTAGTAATTTTACAAACC
1 AAGGGTATTTTGGTAATTTTACAAACC
*
45623987 AGGGGTATTTTGGTAATTT
1 AAGGGTATTTTGGTAATTT
45624006 GGTAAACTAA
Statistics
Matches: 238, Mismatches: 49, Indels: 4
0.82 0.17 0.01
Matches are distributed among these distances:
26 3 0.01
27 234 0.98
28 1 0.00
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTACAAACC
Found at i:45624012 original size:54 final size:54
Alignment explanation
Indices: 45623743--45624005 Score: 359
Period size: 54 Copynumber: 4.9 Consensus size: 54
45623733 TTCTACCCTA
* * * *
45623743 CAAGGGTATTTTGGTAGTTTCACAAA-TATGGGGTATTTTGGTAATTTTATAAAC
1 CAAGGGTATTTTAGTAATTTTACAAACCA-GGGGTATTTTGGTAATTTTATAAAC
* * **
45623797 CAAGGGTATTCTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGGAAAC
1 CAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAAC
* * **
45623851 CAATGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTCCTAATTTTATAAAC
1 CAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAAC
* * *
45623905 CAAGGGTATTTT-GATAAATTTACAAACCAAGGGTATTTTGGTGATTTTATAAAC
1 CAAGGGTATTTTAG-TAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAAC
45623959 CAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
1 CAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
45624006 GGTAAACTAA
Statistics
Matches: 183, Mismatches: 23, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
53 1 0.01
54 179 0.98
55 3 0.02
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.39
Consensus pattern (54 bp):
CAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAAC
Found at i:45627639 original size:85 final size:86
Alignment explanation
Indices: 45627471--45627679 Score: 359
Period size: 85 Copynumber: 2.4 Consensus size: 86
45627461 GCATGAAACT
*
45627471 CGGTGATGTGTATTCCGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATATGTATTCGGGCATT
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATATGTATTCGGGCATT
45627536 CGTGCCTAGCAGGCTTCGTGC
66 CGTGCCTAGCAGGCTTCGTGC
* *
45627557 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTT-GTGCTGGTGATGTGTATTCGGGTC-T
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATATGTATTCGGG-CAT
45627620 TCGTGCCTAGCAGGCTTCGTGC
65 TCGTGCCTAGCAGGCTTCGTGC
*
45627642 CGGTGATGTGTATTCGGGTCTTCGTGCCTAGCAGGCTT
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTT
45627680 AATTCCGGTG
Statistics
Matches: 118, Mismatches: 4, Indels: 3
0.94 0.03 0.02
Matches are distributed among these distances:
85 80 0.68
86 38 0.32
ACGTcount: A:0.11, C:0.23, G:0.34, T:0.32
Consensus pattern (86 bp):
CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATATGTATTCGGGCATT
CGTGCCTAGCAGGCTTCGTGC
Found at i:45627691 original size:43 final size:43
Alignment explanation
Indices: 45627471--45627679 Score: 357
Period size: 43 Copynumber: 4.9 Consensus size: 43
45627461 GCATGAAACT
*
45627471 CGGTGATGTGTATTCCGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
* *
45627514 CGGTGATATGTATTCGGGCATTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
45627557 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTT-GTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
* *
45627599 TGGTGATGTGTATTCGGGTCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
*
45627642 CGGTGATGTGTATTCGGGTCTTCGTGCCTAGCAGGCTT
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTT
45627680 AATTCCGGTG
Statistics
Matches: 157, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
42 40 0.25
43 117 0.75
ACGTcount: A:0.11, C:0.23, G:0.34, T:0.32
Consensus pattern (43 bp):
CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
Found at i:45627909 original size:29 final size:28
Alignment explanation
Indices: 45627870--45628013 Score: 148
Period size: 29 Copynumber: 5.0 Consensus size: 28
45627860 CAAATTCCTT
45627870 TAACCGAGCACTATGTGTGCGAGATCGG
1 TAACCGAGCACTATGTGTGCGAGATCGG
** * **
45627898 TAATTGAGGCACTATGTGTGC-AAATTCCTT
1 TAACCGA-GCACTATGTGTGCGAGA-T-CGG
45627928 TAACCGAGCACTATGTGTGCGAGATCGG
1 TAACCGAGCACTATGTGTGCGAGATCGG
** * *
45627956 TAATTGAGGCACTATGTGTGCGAGTTC-T
1 TAACCGA-GCACTATGTGTGCGAGATCGG
45627984 TCAACCGAGCACTATGTGTGCGAGATCGG
1 T-AACCGAGCACTATGTGTGCGAGATCGG
45628013 T
1 T
45628014 CAGTGGGCAC
Statistics
Matches: 91, Mismatches: 18, Indels: 13
0.75 0.15 0.11
Matches are distributed among these distances:
28 32 0.35
29 51 0.56
30 8 0.09
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.28
Consensus pattern (28 bp):
TAACCGAGCACTATGTGTGCGAGATCGG
Found at i:45627916 original size:58 final size:58
Alignment explanation
Indices: 45627845--45628013 Score: 286
Period size: 58 Copynumber: 2.9 Consensus size: 58
45627835 CGAATGATTA
* *
45627845 GAGGCACTGTGTGTACAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
1 GAGGCACTATGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
45627903 GAGGCACTATGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
1 GAGGCACTATGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
* * *
45627961 GAGGCACTATGTGTGCGAGTT-CTTCAACCGAGCACTATGTGTGCGAGATCGGT
1 GAGGCACTATGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGT
45628014 CAGTGGGCAC
Statistics
Matches: 106, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
57 31 0.29
58 75 0.71
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (58 bp):
GAGGCACTATGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
Found at i:45631654 original size:28 final size:26
Alignment explanation
Indices: 45631598--45631710 Score: 93
Period size: 27 Copynumber: 4.2 Consensus size: 26
45631588 AGCATGGCTG
* **
45631598 CCAGAACAGATAATGTGACAAAATCA
1 CCAGAACAGATAATGTGGCAAAGCCA
45631624 CCAGATACAGATAATCGTGGCAAAGCCA
1 CCAGA-ACAGATAAT-GTGGCAAAGCCA
* *
45631652 CCAGAATAGATATATAG-GGCAGAGCCA
1 CCAGAACAGATA-AT-GTGGCAAAGCCA
* * *
45631679 CTAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATAA--TGTGGCAAAGCCA
45631707 CCAG
1 CCAG
45631711 GACGCTTCCT
Statistics
Matches: 70, Mismatches: 11, Indels: 10
0.77 0.12 0.11
Matches are distributed among these distances:
26 6 0.09
27 34 0.49
28 30 0.43
ACGTcount: A:0.40, C:0.21, G:0.21, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAAAGCCA
Found at i:45633182 original size:24 final size:23
Alignment explanation
Indices: 45633150--45633215 Score: 96
Period size: 24 Copynumber: 2.8 Consensus size: 23
45633140 CACCCTAATT
45633150 AGCTCCTAAATCCTCTCCTTGATC
1 AGCTCCTAAATCCTCTCCTT-ATC
*
45633174 AGCTCCTAAATCCTCTCCCTTATT
1 AGCTCCTAAATCCTCT-CCTTATC
*
45633198 AGCTCCTAAATCTTCTCC
1 AGCTCCTAAATCCTCTCC
45633216 AGGCAGACTT
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
23 2 0.05
24 33 0.85
25 4 0.10
ACGTcount: A:0.21, C:0.38, G:0.06, T:0.35
Consensus pattern (23 bp):
AGCTCCTAAATCCTCTCCTTATC
Found at i:45638520 original size:28 final size:26
Alignment explanation
Indices: 45638465--45638577 Score: 118
Period size: 27 Copynumber: 4.2 Consensus size: 26
45638455 AGCATGGCTG
* *
45638465 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
45638491 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
* * *
45638519 CCAGAATAGATATATGGGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
45638546 CCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATAA--TGTGGCAGAGCCA
45638574 CCAG
1 CCAG
45638578 GATGCTTCCT
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
26 6 0.08
27 35 0.47
28 33 0.45
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:45640043 original size:24 final size:24
Alignment explanation
Indices: 45640011--45640084 Score: 112
Period size: 24 Copynumber: 3.1 Consensus size: 24
45640001 ACACAGTTCA
*
45640011 CCCTAATCATCTCCTAAATCCTCT
1 CCCTAATCAGCTCCTAAATCCTCT
*
45640035 CCCTGATCAGCTCCTAAATCCTCT
1 CCCTAATCAGCTCCTAAATCCTCT
* *
45640059 CCCTTATCAGCTCCTAAATCTTCT
1 CCCTAATCAGCTCCTAAATCCTCT
45640083 CC
1 CC
45640085 AGACAGACTT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 46 1.00
ACGTcount: A:0.22, C:0.42, G:0.04, T:0.32
Consensus pattern (24 bp):
CCCTAATCAGCTCCTAAATCCTCT
Found at i:45644918 original size:46 final size:46
Alignment explanation
Indices: 45644861--45645036 Score: 182
Period size: 46 Copynumber: 3.8 Consensus size: 46
45644851 TATTTGGGCA
45644861 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* *
45644907 TCCGAATTCGTTGAGTTGAGTCCGAGTT--C-GA-GAGATGT-AACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGTGAA-T--G
* ** * *
45644952 CATCCGAGCTCGTTGAGTTGAGTCAAAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* *
45645000 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
45645037 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 12, Indels: 22
0.76 0.09 0.16
Matches are distributed among these distances:
42 3 0.03
43 7 0.07
44 1 0.01
45 1 0.01
46 61 0.57
47 24 0.22
48 1 0.01
49 1 0.01
50 5 0.05
51 3 0.03
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
Found at i:45645016 original size:93 final size:93
Alignment explanation
Indices: 45644857--45645028 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
45644847 AGGATATTTG
** * * * *
45644857 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGTCCGAATTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCAAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
45644922 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
45644950 GGCATCCGAGCTCGTTGAGTTGAGTCAAAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCAAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
45645015 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
45645029 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCAAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:45648001 original size:15 final size:15
Alignment explanation
Indices: 45647983--45648051 Score: 75
Period size: 15 Copynumber: 4.6 Consensus size: 15
45647973 ATCTTGGGTT
*
45647983 TCTTTATCCTGGATC
1 TCTTTATTCTGGATC
*
45647998 TCTTTATTCTGGATT
1 TCTTTATTCTGGATC
* *
45648013 TCTTTATTCTGGGTT
1 TCTTTATTCTGGATC
* * *
45648028 TCTCTATTTTGGATT
1 TCTTTATTCTGGATC
45648043 TCTTTATTC
1 TCTTTATTC
45648052 GGTTTTCTTA
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 46 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TCTTTATTCTGGATC
Found at i:45648050 original size:30 final size:29
Alignment explanation
Indices: 45647976--45648063 Score: 97
Period size: 30 Copynumber: 3.0 Consensus size: 29
45647966 ATATCGTATC
* * *
45647976 TTGGGTTTCTTTATCCTGGATCTCTTTATT
1 TTGGATTTCTTTATTCTGGATTTC-TTATT
* *
45648006 CTGGATTTCTTTATTCTGGGTTTCTCTATT
1 TTGGATTTCTTTATTCTGGATTTCT-TATT
*
45648036 TTGGATTTCTTTATTC-GGTTTTCTTATT
1 TTGGATTTCTTTATTCTGGATTTCTTATT
45648064 ATCTTTGTTC
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
28 4 0.08
29 8 0.16
30 38 0.76
ACGTcount: A:0.10, C:0.15, G:0.16, T:0.59
Consensus pattern (29 bp):
TTGGATTTCTTTATTCTGGATTTCTTATT
Found at i:45650969 original size:46 final size:45
Alignment explanation
Indices: 45650913--45651088 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 45
45650903 TATTTGGGCA
45650913 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
45650959 TCTGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
45651006 TCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
45651052 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
45651089 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 67 0.63
47 30 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:45651026 original size:93 final size:93
Alignment explanation
Indices: 45650909--45651080 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
45650899 AGGATATTTG
* * * *
45650909 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
45650974 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
45651002 GGCATCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
45651067 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
45651081 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:45665173 original size:59 final size:53
Alignment explanation
Indices: 45665070--45665204 Score: 128
Period size: 59 Copynumber: 2.4 Consensus size: 53
45665060 TAGGTTCCGA
* * * *
45665070 ATTTAGCCTGGACTGGTAATTCAGATCCGAGCTCATTAGACTATATGTCGTTGTAGGGG
1 ATTTAGCCTGGACTGGTAATCCAGA-CCGAACTCATGAGACTATAT-T--ATG--GGGG
* *
45665129 ATTTAGCCTGGACTGGTAATCCTGA-CGATACTCTATGAGTCTATATTATGGGGG
1 ATTTAGCCTGGACTGGTAATCCAGACCGA-ACTC-ATGAGACTATATTATGGGGG
*
45665183 ATTTAGCCTGGACTGTTAATCC
1 ATTTAGCCTGGACTGGTAATCC
45665205 CGACATAAGA
Statistics
Matches: 67, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
54 25 0.37
56 2 0.03
57 3 0.04
58 4 0.06
59 33 0.49
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (53 bp):
ATTTAGCCTGGACTGGTAATCCAGACCGAACTCATGAGACTATATTATGGGGG
Found at i:45678254 original size:50 final size:49
Alignment explanation
Indices: 45678082--45678326 Score: 242
Period size: 49 Copynumber: 4.9 Consensus size: 49
45678072 TCTATTGTGA
* * * *
45678082 GGTCACGTATGTAGTACTAAGTGCGGGCTACTACGTGTACCGGATTATT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * *
45678131 GGTCGCATGTGTAGTACTAAGTGCAGGCTCCTATGAGTACTC-GATAACTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAGATAA-TT
* * * * **
45678181 CGATCACGTGTGTATTACAAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
45678231 AGGTCACGTGTATAGTACTAAGTGCAGACTACTACGTGTACCAGATAATT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
45678281 GGTCGA-ATGTGTAGTACTAAGTGCAGGATACTATGCGTACCAGATA
1 GGTC-ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
45678327 GCTTTGGCTA
Statistics
Matches: 157, Mismatches: 34, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
49 75 0.48
50 48 0.31
51 34 0.22
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (49 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:45679366 original size:11 final size:11
Alignment explanation
Indices: 45679350--45679380 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
45679340 CATGTTGCGG
45679350 CTTTACTACGA
1 CTTTACTACGA
45679361 CTTTACTACGA
1 CTTTACTACGA
45679372 CTTTACTAC
1 CTTTACTAC
45679381 AACCCACATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.26, C:0.29, G:0.06, T:0.39
Consensus pattern (11 bp):
CTTTACTACGA
Found at i:45679743 original size:25 final size:25
Alignment explanation
Indices: 45679709--45679769 Score: 86
Period size: 25 Copynumber: 2.4 Consensus size: 25
45679699 AATCAAATCG
* *
45679709 AGAATTAGAATCAAAATCAGGTGAC
1 AGAATCAGAATCAAAATCAGGTAAC
**
45679734 AGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAAAATCAGGTAAC
45679759 AGAATCAGAAT
1 AGAATCAGAAT
45679770 GTGAATGCAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.48, C:0.13, G:0.20, T:0.20
Consensus pattern (25 bp):
AGAATCAGAATCAAAATCAGGTAAC
Found at i:45679956 original size:26 final size:26
Alignment explanation
Indices: 45679889--45679967 Score: 95
Period size: 26 Copynumber: 3.0 Consensus size: 26
45679879 CATGGCTGCC
* * * *
45679889 AGAACAAATATTGTGACAGAGTCACC
1 AGAACAGATATTGTGGCAGAGCCACT
45679915 AGATACAGATATTGTGGCAGAGCCACT
1 AGA-ACAGATATTGTGGCAGAGCCACT
* *
45679942 AGAACAGATAATGTGGCAAAGCCACT
1 AGAACAGATATTGTGGCAGAGCCACT
45679968 TAACAGAATA
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 24 0.52
27 22 0.48
ACGTcount: A:0.39, C:0.19, G:0.23, T:0.19
Consensus pattern (26 bp):
AGAACAGATATTGTGGCAGAGCCACT
Found at i:45679982 original size:25 final size:26
Alignment explanation
Indices: 45679919--45679984 Score: 64
Period size: 26 Copynumber: 2.6 Consensus size: 26
45679909 GTCACCAGAT
** *
45679919 ACAGATATTGTGGCAGAGCCACTAGA
1 ACAGATAACGTGGCAAAGCCACTAGA
* *
45679945 ACAGATAATGTGGCAAAGCCACT-TA
1 ACAGATAACGTGGCAAAGCCACTAGA
45679970 ACAGA-ATACGTGGCA
1 ACAGATA-ACGTGGCA
45679985 CAAAGCTATC
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
24 1 0.03
25 13 0.37
26 21 0.60
ACGTcount: A:0.38, C:0.20, G:0.24, T:0.18
Consensus pattern (26 bp):
ACAGATAACGTGGCAAAGCCACTAGA
Found at i:45680153 original size:22 final size:22
Alignment explanation
Indices: 45680125--45680185 Score: 68
Period size: 22 Copynumber: 2.8 Consensus size: 22
45680115 GCAAATACGT
*
45680125 TTGGCACATAGCCATAAACAGG
1 TTGGCACAAAGCCATAAACAGG
* ***
45680147 TTGGCACAGAGCCATATGTAGG
1 TTGGCACAAAGCCATAAACAGG
*
45680169 TTGGCGCAAAGCCATAA
1 TTGGCACAAAGCCATAA
45680186 TCAGAAGGCT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.33, C:0.21, G:0.26, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAAACAGG
Found at i:45682077 original size:40 final size:40
Alignment explanation
Indices: 45682032--45682256 Score: 263
Period size: 40 Copynumber: 5.6 Consensus size: 40
45682022 CTTGCACAAG
* * *
45682032 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
45682072 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * *
45682112 GCCTTTGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
45682152 GCCTTCGGGTCTTAGCCCAGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
45682192 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
* *
45682233 GCCTTCGGGACTTAGCTCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
45682257 CATTCGAATA
Statistics
Matches: 154, Mismatches: 28, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
39 1 0.01
40 125 0.81
41 28 0.18
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:45682145 original size:80 final size:80
Alignment explanation
Indices: 45681996--45682256 Score: 276
Period size: 80 Copynumber: 3.3 Consensus size: 80
45681986 CTCAAGAAAT
* * * * * * * *
45681996 CTTCAGGATTTAG-CCGGATATAACTACTTGCAC-AAGGCCTTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
45682059 CACTAGCATAAATGC
66 CACTAGCACAAATGC
* * * *
45682074 CTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTTGGGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
*
45682138 TCGCTAGCACAAATGC
65 TCACTAGCACAAATGC
* * * * * * *
45682154 CTTCGGGTCTTAGCCCAGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
45682219 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
*
45682235 CTTCGGGACTTAGCTCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
45682257 CATTCGAATA
Statistics
Matches: 149, Mismatches: 29, Indels: 7
0.81 0.16 0.04
Matches are distributed among these distances:
78 11 0.07
79 16 0.11
80 91 0.61
81 31 0.21
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:45684076 original size:27 final size:27
Alignment explanation
Indices: 45684037--45684397 Score: 416
Period size: 27 Copynumber: 13.4 Consensus size: 27
45684027 GGGCTGTCAT
* * * *
45684037 AAGGGCATCTCGGTAATTCCACCCTAC
1 AAGGGTATTTCGGTATTTCTACCCTAC
* *
45684064 AGGGGTATTTCGGTATTTCTACCCTAT
1 AAGGGTATTTCGGTATTTCTACCCTAC
* *
45684091 AAGGGTATTTCGGTAATTCTATCCTAC
1 AAGGGTATTTCGGTATTTCTACCCTAC
* * *
45684118 AAGGGTATTTCAGTAATTCTACCCTAT
1 AAGGGTATTTCGGTATTTCTACCCTAC
* **
45684145 AGGGGTATTTCAATATTTCTACCCTAC
1 AAGGGTATTTCGGTATTTCTACCCTAC
* * * *
45684172 AAGGGTATTTCAGCATTTCTATCCTAT
1 AAGGGTATTTCGGTATTTCTACCCTAC
** * *
45684199 AAGGGTATTTCAATAATTCTACCTTAC
1 AAGGGTATTTCGGTATTTCTACCCTAC
* * *
45684226 AGGGGTATTTTGGTATTTTTACCCTAC
1 AAGGGTATTTCGGTATTTCTACCCTAC
* *
45684253 AAGGGTCTTTCGGTATTTCAACCCTAC
1 AAGGGTATTTCGGTATTTCTACCCTAC
*
45684280 AAGGGTATTTCGGTAATTCTACCCTAC
1 AAGGGTATTTCGGTATTTCTACCCTAC
* * *
45684307 AGGGGTATTTCAGTAATTCTACCCTAC
1 AAGGGTATTTCGGTATTTCTACCCTAC
*
45684334 AGGGGTATTTCGGTATTTCTACCCTAC
1 AAGGGTATTTCGGTATTTCTACCCTAC
*
45684361 AAGGGTATTTCGGTATTTCTACCCTAT
1 AAGGGTATTTCGGTATTTCTACCCTAC
*
45684388 AGGGGTATTT
1 AAGGGTATTT
45684398 TAATAATTTT
Statistics
Matches: 284, Mismatches: 50, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 284 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (27 bp):
AAGGGTATTTCGGTATTTCTACCCTAC
Found at i:45684405 original size:81 final size:81
Alignment explanation
Indices: 45684037--45684397 Score: 488
Period size: 81 Copynumber: 4.5 Consensus size: 81
45684027 GGGCTGTCAT
* * * * *
45684037 AAGGGCATCTCGGTAATTCCACCCTACAGGGGTATTTCGGTATTTCTACCCTATAAGGGTATTTC
1 AAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTC
* *
45684102 GGTAATTCTATCCTAC
66 GGTATTTCTACCCTAC
* * *
45684118 AAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCAATATTTCTACCCTACAAGGGTATTTC
1 AAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTC
* * * *
45684183 AGCATTTCTATCCTAT
66 GGTATTTCTACCCTAC
** * ** * *
45684199 AAGGGTATTTCAATAATTCTACCTTACAGGGGTATTTTGGTATTTTTACCCTACAAGGGTCTTTC
1 AAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTC
*
45684264 GGTATTTCAACCCTAC
66 GGTATTTCTACCCTAC
* *
45684280 AAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
1 AAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTC
45684345 GGTATTTCTACCCTAC
66 GGTATTTCTACCCTAC
* *
45684361 AAGGGTATTTCGGTATTTCTACCCTATAGGGGTATTT
1 AAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTT
45684398 TAATAATTTT
Statistics
Matches: 243, Mismatches: 37, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
81 243 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (81 bp):
AAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTC
GGTATTTCTACCCTAC
Found at i:45684420 original size:27 final size:27
Alignment explanation
Indices: 45684390--45684863 Score: 376
Period size: 27 Copynumber: 17.6 Consensus size: 27
45684380 TACCCTATAG
* * **
45684390 GGGTATTTTAATAATTTTGTAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
** * * * *
45684417 GGGTAAATCTGTAATTCTATAAATCGG
1 GGGTATTTCAGTAATTTTACAAATCGA
*
45684444 GGGTACTTT--GTTAATTTTACAAGTCGA
1 GGGTA-TTTCAG-TAATTTTACAAATCGA
* * *
45684471 GGGTATTTTAGTAATTTTATAAATCAA
1 GGGTATTTCAGTAATTTTACAAATCGA
* *
45684498 GGATATTTCAGTAATTTTGCAAA-CTGA
1 GGGTATTTCAGTAATTTTACAAATC-GA
*
45684525 GGGTATTT-TGATAATTTTACAAATCGA
1 GGGTATTTCAG-TAATTTTACAAATCGA
* *
45684552 GGGTATTTCAATAATTTTAC-AATCAA
1 GGGTATTTCAGTAATTTTACAAATCGA
** *
45684578 CCGTATTTC-GATAATTTTACAAATCAA
1 GGGTATTTCAG-TAATTTTACAAATCGA
45684605 GGGTATTTCAGTAATTTTAC-AATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
* *
45684631 CGGTATTTCGGTAATTTTACAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
* ** * *
45684658 GGATATTTGGGTAATTTTATAAA-CCA
1 GGGTATTTCAGTAATTTTACAAATCGA
* *
45684684 GGGGTACTTT-GGTAATTTTACAAGTCGA
1 -GGGTA-TTTCAGTAATTTTACAAATCGA
* *
45684712 GGGTATTTCAATAATTTTACAAATCCA
1 GGGTATTTCAGTAATTTTACAAATCGA
* *
45684739 GGGTATTTTAGTAATTTTGCAAA-CTGA
1 GGGTATTTCAGTAATTTTACAAATC-GA
* *
45684766 GGATATTTCGGTAATTTTACAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
* *
45684793 GGGTATTTCAATAATTTTAC-AATCAA
1 GGGTATTTCAGTAATTTTACAAATCGA
* * * * *
45684819 CGATATTTCGGTAATTTTATAAACCAGTA
1 GGGTATTTCAGTAATTTTACAAATC-G-A
45684848 GGGGTATTTCAGTAAT
1 -GGGTATTTCAGTAAT
45684864 GTGGTAAACT
Statistics
Matches: 354, Mismatches: 71, Indels: 41
0.76 0.15 0.09
Matches are distributed among these distances:
26 76 0.21
27 255 0.72
28 10 0.03
29 1 0.00
30 12 0.03
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.39
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTTACAAATCGA
Found at i:45684690 original size:241 final size:243
Alignment explanation
Indices: 45684427--45684863 Score: 691
Period size: 241 Copynumber: 1.8 Consensus size: 243
45684417 GGGTAAATCT
* * * * * *
45684427 GTAATTCTATAAATCGGGGGTACTTTGTTAATTTTACAAGTCGAGGGTATTTTAGTAATTTTATA
1 GTAATTCTATAAACCAGGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAATAATTTTACA
* *
45684492 AATCAAGGATATTTCAGTAATTTTGCAAACTGAGGGTATTTTGATAATTTTACAAATCGAGGGTA
66 AATCAAGGATATTTCAGTAATTTTGCAAACTGAGGATATTTCGATAATTTTACAAATCGAGGGTA
*
45684557 TTTCAATAATTTTACAATCAACCG-TATTTCGATAATTTTACAAATCA-A-GGGTATTTCAGTAA
131 TTTCAATAATTTTACAATCAA-CGATATTTCGATAATTTTACAAACCAGAGGGGTATTTCAGTAA
45684619 TTTTACAATCGACGGTATTTCGGTAATTTTACAAATCGAGGATATTTGG
195 TTTTACAATCGACGGTATTTCGGTAATTTTACAAATCGAGGATATTTGG
*
45684668 GTAATTTTATAAACCAGGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAATAATTTTACA
1 GTAATTCTATAAACCAGGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAATAATTTTACA
* * * *
45684733 AATCCAGGGTATTTTAGTAATTTTGCAAACTGAGGATATTTCGGTAATTTTACAAATCGAGGGTA
66 AATCAAGGATATTTCAGTAATTTTGCAAACTGAGGATATTTCGATAATTTTACAAATCGAGGGTA
* *
45684798 TTTCAATAATTTTACAATCAACGATATTTCGGTAATTTTATAAACCAGTAGGGGTATTTCAGTAA
131 TTTCAATAATTTTACAATCAACGATATTTCGATAATTTTACAAACCAG-AGGGGTATTTCAGTAA
45684863 T
195 T
45684864 GTGGTAAACT
Statistics
Matches: 176, Mismatches: 16, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
240 2 0.01
241 158 0.90
243 1 0.01
244 15 0.09
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.38
Consensus pattern (243 bp):
GTAATTCTATAAACCAGGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAATAATTTTACA
AATCAAGGATATTTCAGTAATTTTGCAAACTGAGGATATTTCGATAATTTTACAAATCGAGGGTA
TTTCAATAATTTTACAATCAACGATATTTCGATAATTTTACAAACCAGAGGGGTATTTCAGTAAT
TTTACAATCGACGGTATTTCGGTAATTTTACAAATCGAGGATATTTGG
Found at i:45686774 original size:48 final size:49
Alignment explanation
Indices: 45686703--45686940 Score: 270
Period size: 48 Copynumber: 4.9 Consensus size: 49
45686693 GACATTTGGG
* * *
45686703 TGATATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCA-
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAT
* ** *
45686751 TGATATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGTGTTGG-CAT
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAT
* * *
45686799 TGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCA-
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAT
* * *
45686847 -CATAATGAGAGCCAGTGTAAGGCCATGTCTGGGACATGGCATCGG-CAT
1 TGAT-ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAT
* ** * *
45686895 TGAGACAAAAGCTAGTGTAAGTCCATGTCTGGGACATGGCATCGGC
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
45686941 AATTTACCCT
Statistics
Matches: 157, Mismatches: 27, Indels: 11
0.81 0.14 0.06
Matches are distributed among these distances:
47 6 0.04
48 148 0.94
49 3 0.02
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.25
Consensus pattern (49 bp):
TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAT
Found at i:45686867 original size:96 final size:96
Alignment explanation
Indices: 45686703--45686937 Score: 301
Period size: 96 Copynumber: 2.4 Consensus size: 96
45686693 GACATTTGGG
* * * * *
45686703 TGATATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCATGATATGAGAGCTAGTG
1 TGATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCATCATATGAGAGCCAGTG
** *
45686768 TAAGACCATGTCTAGGACATGGTGTTGGCAT
66 TAAGACCATGTCTAGGACATGGCATCGGCAT
*
45686799 TGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCA-CATAATGAGAGCCAGT
1 TGATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCATCAT-ATGAGAGCCAGT
* *
45686863 GTAAGGCCATGTCTGGGACATGGCATCGGCAT
65 GTAAGACCATGTCTAGGACATGGCATCGGCAT
* **** *
45686895 TGAGACAAAAGCTAGTGTAAGTCCATGTCTGGGACATGGCATC
1 TGATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
45686938 GGCAATTTAC
Statistics
Matches: 121, Mismatches: 17, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
95 2 0.02
96 119 0.98
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (96 bp):
TGATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCATCATATGAGAGCCAGTG
TAAGACCATGTCTAGGACATGGCATCGGCAT
Found at i:45688727 original size:122 final size:123
Alignment explanation
Indices: 45688510--45688756 Score: 451
Period size: 122 Copynumber: 2.0 Consensus size: 123
45688500 AACTTATTCA
*
45688510 TATTGACCTTTTTGGACCCACTAGAACTATGAGTGTAGGAGGTAAACAATATGGATTTGTTATTG
1 TATTGACCTTTTTGGACCCACTAGAACTATGAGTGTAGGAAGTAAACAATATGGATTTGTTATTG
*
45688575 TTGAAGACTCTTCTAGATATACATGGGTTTTC-TTTTTGTTTTCAAAAGATGAAGCTT
66 TTGAAGACTATTCTAGATATACATGGGTTTTCGTTTTTGTTTTCAAAAGATGAAGCTT
45688632 TATTGACCTTTTTGGACCCACTAGAACTATGAGTGTAGGAAGTAAACAATATGGATTTGTTATTG
1 TATTGACCTTTTTGGACCCACTAGAACTATGAGTGTAGGAAGTAAACAATATGGATTTGTTATTG
* *
45688697 TTGATGACTATTCTAGATATACATGGGTTTTCGTTTTTGTTTTCAAAAGATGCAGCTT
66 TTGAAGACTATTCTAGATATACATGGGTTTTCGTTTTTGTTTTCAAAAGATGAAGCTT
45688755 TA
1 TA
45688757 GAAAAATTTA
Statistics
Matches: 120, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
122 94 0.78
123 26 0.22
ACGTcount: A:0.28, C:0.12, G:0.20, T:0.40
Consensus pattern (123 bp):
TATTGACCTTTTTGGACCCACTAGAACTATGAGTGTAGGAAGTAAACAATATGGATTTGTTATTG
TTGAAGACTATTCTAGATATACATGGGTTTTCGTTTTTGTTTTCAAAAGATGAAGCTT
Found at i:45692961 original size:14 final size:15
Alignment explanation
Indices: 45692937--45692968 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
45692927 ATTTTCAGTT
45692937 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
45692952 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
45692966 TTT
1 TTT
45692969 TTCGTGATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.25, C:0.00, G:0.19, T:0.56
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:45694212 original size:44 final size:44
Alignment explanation
Indices: 45694106--45694216 Score: 143
Period size: 44 Copynumber: 2.5 Consensus size: 44
45694096 TATGTGTTCT
* * *
45694106 CATGTAAGACCACGTCTAGGACATTGGCATTAATATTTGTGGTTA
1 CATGTAAGACCACGTCTGGGACATTGGCATCAATA-TTGTGATTA
* * *
45694151 CGTGTAAGACCATGTCTGGGACATGTGGCATCGATA-TGTGATTA
1 CATGTAAGACCACGTCTGGGACAT-TGGCATCAATATTGTGATTA
45694195 CATGTAAGACCACGTCTGGGAC
1 CATGTAAGACCACGTCTGGGAC
45694217 GCCGCATTGT
Statistics
Matches: 57, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
44 27 0.47
45 21 0.37
46 9 0.16
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (44 bp):
CATGTAAGACCACGTCTGGGACATTGGCATCAATATTGTGATTA
Found at i:45695860 original size:46 final size:46
Alignment explanation
Indices: 45695776--45695894 Score: 136
Period size: 46 Copynumber: 2.6 Consensus size: 46
45695766 AGGTGCCGAT
* **
45695776 GCCATGTCCCAGACACGGTCTTACACTGGCTTATATCTCA-AGTTGAA
1 GCCATGTCCCAGACA-GGTCTTACACTGACTTATATCTCATAG-CCAA
*
45695823 GCCATGTCCCAGACAGGTCTTACATTGAC-TATCATCTCATAGCCAA
1 GCCATGTCCCAGACAGGTCTTACACTGACTTAT-ATCTCATAGCCAA
*
45695869 -CGCATGTCCCAGACATGTCTTACACT
1 GC-CATGTCCCAGACAGGTCTTACACT
45695895 AGTTTATGTC
Statistics
Matches: 63, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
45 4 0.06
46 42 0.67
47 17 0.27
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.27
Consensus pattern (46 bp):
GCCATGTCCCAGACAGGTCTTACACTGACTTATATCTCATAGCCAA
Found at i:45695952 original size:46 final size:44
Alignment explanation
Indices: 45695874--45695991 Score: 130
Period size: 46 Copynumber: 2.5 Consensus size: 44
45695864 GCCAACGCAT
* * *
45695874 GTCCCAGACATGTCTTACACTAGTTTATGTCTCGAGGCTGATGCCA
1 GTCCCAGACATGTCTTACACTAG--CATGTCTCAAGGCCGATGCCA
*
45695920 GTCCCAGACATGTCTTACACTAGCACTCGTCTCAATGCCGATGCCA
1 GTCCCAGACATGTCTTACACTAGCA-T-GTCTCAAGGCCGATGCCA
45695966 -TCTCTCAGACATCGTCTTACACTAGC
1 GTC-C-CAGACAT-GTCTTACACTAGC
45695992 TCTCACAAAT
Statistics
Matches: 63, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
44 1 0.02
45 3 0.05
46 39 0.62
47 7 0.11
48 13 0.21
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.28
Consensus pattern (44 bp):
GTCCCAGACATGTCTTACACTAGCATGTCTCAAGGCCGATGCCA
Found at i:45695953 original size:92 final size:92
Alignment explanation
Indices: 45695776--45695992 Score: 217
Period size: 92 Copynumber: 2.3 Consensus size: 92
45695766 AGGTGCCGAT
* * *
45695776 GCCATGTCCCAGACACGGTCTTACACTGGCTTATATCTCAAGTTGAAGCCATGTCCCAGACAGGT
1 GCCATGTCCCAGACA-TGTCTTACACTAGCTTATATCTCAAGCTGAAGCCATGTCCCAGACAGGT
*
45695841 CTTACATTGACTATCATCTC-ATAGCCAAC
65 CTTACATAGAC-ATCATCTCAAT-GCCAAC
* * * * *
45695870 G-CATGTCCCAGACATGTCTTACACTAGTTTATGTCTCGAGGCTGATGCCA-GTCCCAGACATGT
1 GCCATGTCCCAGACATGTCTTACACTAGCTTATATCTC-AAGCTGAAGCCATGTCCCAGACAGGT
* * *
45695933 CTTACACTAG-CACTCGTCTCAATGCCGAT
65 CTTACA-TAGACA-TCATCTCAATGCCAAC
* *
45695962 GCCATCTCTCAGACATCGTCTTACACTAGCT
1 GCCATGTCCCAGACAT-GTCTTACACTAGCT
45695993 CTCACAAATG
Statistics
Matches: 102, Mismatches: 15, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
91 1 0.01
92 49 0.48
93 38 0.37
94 14 0.14
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (92 bp):
GCCATGTCCCAGACATGTCTTACACTAGCTTATATCTCAAGCTGAAGCCATGTCCCAGACAGGTC
TTACATAGACATCATCTCAATGCCAAC
Found at i:45701184 original size:29 final size:29
Alignment explanation
Indices: 45701101--45701196 Score: 131
Period size: 29 Copynumber: 3.3 Consensus size: 29
45701091 AATGTGACTA
* *
45701101 GGCCTAACGGGCCATATAAATGTGATTTG
1 GGCCTAATGGGCCATATAAATGTGGTTTG
*
45701130 GGCCTAATGGGCCATATAAAGGTGGTTTG
1 GGCCTAATGGGCCATATAAATGTGGTTTG
* *
45701159 GGCCTAATGGGCCATATGAATATGG-TTG
1 GGCCTAATGGGCCATATAAATGTGGTTTG
*
45701187 GGCTTAATGG
1 GGCCTAATGG
45701197 CCCAGATGCA
Statistics
Matches: 60, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
28 12 0.20
29 48 0.80
ACGTcount: A:0.25, C:0.15, G:0.32, T:0.28
Consensus pattern (29 bp):
GGCCTAATGGGCCATATAAATGTGGTTTG
Found at i:45702104 original size:18 final size:19
Alignment explanation
Indices: 45702059--45702104 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 19
45702049 TGTAATAAGG
45702059 TTTTCATTATGTTATTATTA
1 TTTTCATTA-GTTATTATTA
* *
45702079 CTTGCATTA-TTATTATTA
1 TTTTCATTAGTTATTATTA
45702097 TTTTCATT
1 TTTTCATT
45702105 GTAATTACGA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
18 15 0.68
20 7 0.32
ACGTcount: A:0.24, C:0.09, G:0.04, T:0.63
Consensus pattern (19 bp):
TTTTCATTAGTTATTATTA
Found at i:45704761 original size:45 final size:47
Alignment explanation
Indices: 45704682--45704793 Score: 151
Period size: 46 Copynumber: 2.4 Consensus size: 47
45704672 GGAGTTAGGT
* *
45704682 GCCGATGCGTGTCCCAGACACAGTCTTACACTGACTAT-ATCTCAT-
1 GCCGATGCATGTCCCAGACACAGCCTTACACTGACTATCATCTCATA
*
45704727 GTCGAAT-CTATGTCCCAGACA-AGCCTTACACTGACTATCATCTCATA
1 GCCG-ATGC-ATGTCCCAGACACAGCCTTACACTGACTATCATCTCATA
45704774 GCCGATGCATGTCCCAGACA
1 GCCGATGCATGTCCCAGACA
45704794 TGGTCTTACA
Statistics
Matches: 58, Mismatches: 4, Indels: 9
0.82 0.06 0.13
Matches are distributed among these distances:
45 20 0.34
46 34 0.59
47 4 0.07
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.25
Consensus pattern (47 bp):
GCCGATGCATGTCCCAGACACAGCCTTACACTGACTATCATCTCATA
Found at i:45708369 original size:19 final size:20
Alignment explanation
Indices: 45708345--45708383 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
45708335 CAGTTATAAA
*
45708345 CCAAAA-CAAATTAAAAATC
1 CCAAAATCAAAGTAAAAATC
*
45708364 CCAAAATTAAAGTAAAAATC
1 CCAAAATCAAAGTAAAAATC
45708384 TAAAAAGGCC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.62, C:0.18, G:0.03, T:0.18
Consensus pattern (20 bp):
CCAAAATCAAAGTAAAAATC
Found at i:45716994 original size:40 final size:40
Alignment explanation
Indices: 45716893--45717149 Score: 353
Period size: 40 Copynumber: 6.5 Consensus size: 40
45716883 AAGCCAAGTA
* * * *
45716893 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
45716932 CCTTC-GGACATAGCCCGGATATAGTAACTTGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
45716971 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
45717011 CCTTCGAGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
45717051 CCTTCGGGACTTAGCCCGGATATAGTAGA-TCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTA-ACTCGCACAAATG
* * *
45717091 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
45717131 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
45717150 TTATCATCCA
Statistics
Matches: 198, Mismatches: 14, Indels: 11
0.89 0.06 0.05
Matches are distributed among these distances:
38 6 0.03
39 32 0.16
40 159 0.80
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:45727044 original size:39 final size:39
Alignment explanation
Indices: 45727001--45727156 Score: 210
Period size: 39 Copynumber: 4.0 Consensus size: 39
45726991 AATTATATTA
45727001 CCAGCACAAAGCCTGTGGAACTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGTGGAACTTTAGCCCGGATACATTT
45727040 CCAGCACGAAA-CCTGCTGG-ACTTTAGCCCGGATACATTT
1 CCAGCAC-AAAGCCTG-TGGAACTTTAGCCCGGATACATTT
* * *
45727079 CCAGCACGAAGCCTG-CGAGACTTTAGCCCGGATACATTC
1 CCAGCACAAAGCCTGTGGA-ACTTTAGCCCGGATACATTT
* * *
45727118 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGTGGAACTTTAGCCCGGATACATTT
45727157 GTAGTGTCTT
Statistics
Matches: 105, Mismatches: 6, Indels: 12
0.85 0.05 0.10
Matches are distributed among these distances:
37 1 0.01
38 2 0.02
39 95 0.90
40 7 0.07
ACGTcount: A:0.26, C:0.31, G:0.22, T:0.21
Consensus pattern (39 bp):
CCAGCACAAAGCCTGTGGAACTTTAGCCCGGATACATTT
Found at i:45727133 original size:78 final size:78
Alignment explanation
Indices: 45727001--45727156 Score: 251
Period size: 78 Copynumber: 2.0 Consensus size: 78
45726991 AATTATATTA
* * *
45727001 CCAGCACAAAGCCTGTGGAACTTTAGCCCGGATACATTTCCAGCACGAAACCTGCTGGACTTTAG
1 CCAGCACAAAGCCTGCGGAACTTTAGCCCGGATACATTCCCAGCACGAAACCTGCGGGACTTTAG
45727066 CCCGGATACATTT
66 CCCGGATACATTT
* *
45727079 CCAGCACGAAGCCTGC-GAGACTTTAGCCCGGATACATTCCCAGCACGAAGCCTGCGGGACTTTA
1 CCAGCACAAAGCCTGCGGA-ACTTTAGCCCGGATACATTCCCAGCACGAAACCTGCGGGACTTTA
45727143 GCCCGGATACATTT
65 GCCCGGATACATTT
45727157 GTAGTGTCTT
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
77 2 0.03
78 70 0.97
ACGTcount: A:0.26, C:0.31, G:0.22, T:0.21
Consensus pattern (78 bp):
CCAGCACAAAGCCTGCGGAACTTTAGCCCGGATACATTCCCAGCACGAAACCTGCGGGACTTTAG
CCCGGATACATTT
Found at i:45730490 original size:64 final size:64
Alignment explanation
Indices: 45730410--45730593 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
45730400 AGACATTATG
* * *
45730410 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
45730474 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGTTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
45730539 AA
63 AA
* * *
45730541 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
45730594 CGAACTATAT
Statistics
Matches: 97, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 25 0.26
66 21 0.22
67 30 0.31
68 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:45739919 original size:42 final size:43
Alignment explanation
Indices: 45739858--45739957 Score: 123
Period size: 42 Copynumber: 2.3 Consensus size: 43
45739848 GACTTGAGAT
* **
45739858 TTACCTGTAAGACCATGTCTGGGACATCGGCATC-ATATTTG-A
1 TTACATGTAAGACCATGTCTGGGACAAAGGCATCGATA-TTGAA
* * *
45739900 TTTCGTGTAAGACCCTGTCTGGGACAAAGGCATCGATATTGAA
1 TTACATGTAAGACCATGTCTGGGACAAAGGCATCGATATTGAA
45739943 TTACATGTAAGACCA
1 TTACATGTAAGACCA
45739958 CGTCCAGGAC
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
42 32 0.67
43 16 0.33
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (43 bp):
TTACATGTAAGACCATGTCTGGGACAAAGGCATCGATATTGAA
Found at i:45748820 original size:43 final size:43
Alignment explanation
Indices: 45748756--45748953 Score: 279
Period size: 43 Copynumber: 4.6 Consensus size: 43
45748746 CCGGCATTAC
* **
45748756 GCCTGCTAGGCACGAAGGCCCGAATACACATCACTAGCACGAA
1 GCCTGCTAGGCACGAAGGCCAGAATACACATCACCGGCACGAA
* * * **
45748799 GCTTGCTAGGCACGAAGGCCCGACTACACATCATTGGCACGAA
1 GCCTGCTAGGCACGAAGGCCAGAATACACATCACCGGCACGAA
* *
45748842 GCCTGCTAGGAACGAAAGCCAGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCAGAATACACATCACCGGCACGAA
*
45748885 GCCTGCTAGGCACGAAGGCCAGAATACACATCACCGGCATGAA
1 GCCTGCTAGGCACGAAGGCCAGAATACACATCACCGGCACGAA
* *
45748928 GCCTGCTAGGCACCAAGGCCTGAATA
1 GCCTGCTAGGCACGAAGGCCAGAATA
45748954 TAATACCAGC
Statistics
Matches: 139, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 139 1.00
ACGTcount: A:0.32, C:0.31, G:0.25, T:0.13
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCAGAATACACATCACCGGCACGAA
Found at i:45748953 original size:86 final size:86
Alignment explanation
Indices: 45748743--45748974 Score: 288
Period size: 86 Copynumber: 2.7 Consensus size: 86
45748733 ACATATCATT
* * * * *
45748743 TCACCGGCATTACGCCTGCTAGGCACGAAGGCCCGAATACACATCACTAGCACGAAGCTTGCTAG
1 TCACCGGCATGAAGCCTGCTAGGCACGAAGGCCAGAATACACATCACCAGCACGAAGCCTGCTAG
* *
45748808 GCACGAAGGCCCGACTACACA
66 GCACGAAGGCCAGAATACACA
** * * * *
45748829 TCATTGGCACGAAGCCTGCTAGGAACGAAAGCCAGAATACACATCACCGGCACGAAGCCTGCTAG
1 TCACCGGCATGAAGCCTGCTAGGCACGAAGGCCAGAATACACATCACCAGCACGAAGCCTGCTAG
45748894 GCACGAAGGCCAGAATACACA
66 GCACGAAGGCCAGAATACACA
* * * * *
45748915 TCACCGGCATGAAGCCTGCTAGGCACCAAGGCCTGAATATA-AT-ACCAGCACTAGGCCTGC
1 TCACCGGCATGAAGCCTGCTAGGCACGAAGGCCAGAATACACATCACCAGCACGAAGCCTGC
45748975 AAGATTTAAC
Statistics
Matches: 122, Mismatches: 24, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
84 14 0.11
85 2 0.02
86 106 0.87
ACGTcount: A:0.31, C:0.31, G:0.24, T:0.14
Consensus pattern (86 bp):
TCACCGGCATGAAGCCTGCTAGGCACGAAGGCCAGAATACACATCACCAGCACGAAGCCTGCTAG
GCACGAAGGCCAGAATACACA
Found at i:45749040 original size:75 final size:76
Alignment explanation
Indices: 45748951--45749108 Score: 228
Period size: 75 Copynumber: 2.1 Consensus size: 76
45748941 CAAGGCCTGA
* * *
45748951 ATATAATACCAGCACTAGGCCTGCAAGATTTAACCCGGATATATTACCAACACGAAGCCTGCGAG
1 ATATAATACCAGCACGAAGCCTGCAAGATTTAACCCAGATATATTACCAACACGAAGCCTGCGAG
45749016 ATTTAACCCGG
66 ATTTAACCCGG
* ** * * *
45749027 ATATATTA-CAGCACGAAGCCTGCGGGATTTAACCCAGATATATTACCAGCACGAAGCTTGCGGG
1 ATATAATACCAGCACGAAGCCTGCAAGATTTAACCCAGATATATTACCAACACGAAGCCTGCGAG
45749091 ATTTAACCCGG
66 ATTTAACCCGG
45749102 ATATAAT
1 ATATAAT
45749109 TCTAGCATAT
Statistics
Matches: 72, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
75 65 0.90
76 7 0.10
ACGTcount: A:0.34, C:0.24, G:0.20, T:0.23
Consensus pattern (76 bp):
ATATAATACCAGCACGAAGCCTGCAAGATTTAACCCAGATATATTACCAACACGAAGCCTGCGAG
ATTTAACCCGG
Found at i:45749056 original size:37 final size:38
Alignment explanation
Indices: 45748951--45749106 Score: 224
Period size: 38 Copynumber: 4.1 Consensus size: 38
45748941 CAAGGCCTGA
* * * **
45748951 ATATAATACCAGCACTAGGCCTGCAAGATTTAACCCGG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
* *
45748989 ATATATTACCAACACGAAGCCTGCGAGATTTAACCCGG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
*
45749027 ATATATTA-CAGCACGAAGCCTGCGGGATTTAACCCAG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
*
45749064 ATATATTACCAGCACGAAGCTTGCGGGATTTAACCCGG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
45749102 ATATA
1 ATATA
45749107 ATTCTAGCAT
Statistics
Matches: 107, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
37 34 0.32
38 73 0.68
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.22
Consensus pattern (38 bp):
ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
Found at i:45755093 original size:31 final size:32
Alignment explanation
Indices: 45755055--45755116 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
45755045 CTCGCTGCAA
* *
45755055 TCTGGTGGCTTCGCCAC-ATATATATATCTGT
1 TCTGGTGGCCTAGCCACAATATATATATCTGT
*
45755086 TCTGGTGGCCTAGCCACAATATCTATATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
45755117 GTGACTTCGT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 15 0.56
32 12 0.44
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.35
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:45764997 original size:14 final size:14
Alignment explanation
Indices: 45764978--45765005 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
45764968 TTTGGTAACG
45764978 TGTAAAAGCTTTTC
1 TGTAAAAGCTTTTC
45764992 TGTAAAAGCTTTTC
1 TGTAAAAGCTTTTC
45765006 AGGCTTTTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.43
Consensus pattern (14 bp):
TGTAAAAGCTTTTC
Found at i:45765164 original size:6 final size:6
Alignment explanation
Indices: 45765153--45765177 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
45765143 CACGTTCTTC
45765153 TCCCCT TCCCCT TCCCCT TCCCCT T
1 TCCCCT TCCCCT TCCCCT TCCCCT T
45765178 GGGTTACAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.64, G:0.00, T:0.36
Consensus pattern (6 bp):
TCCCCT
Found at i:45769262 original size:49 final size:48
Alignment explanation
Indices: 45769205--45769713 Score: 821
Period size: 49 Copynumber: 10.6 Consensus size: 48
45769195 TTAAACCCAT
45769205 ATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATA-ATGTGATAAGGCCTAATGGCCGATGTGATGA
45769254 ATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATA-ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
45769303 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATA-ATGTGATAAGGCCTAATGGCCGATGTGATGA
45769352 ATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATA-ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
45769401 ATGTGAAAGTGTATATATACGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATA-ATGTGATAAGGCCTAATGGCCGATGTGATGA
45769450 ATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATA-ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
45769499 ATGTGAAAGTGTATAT-ATGTGATAAGGCCTAATGGCCGATGTGAGGA
1 ATGTGAAAGTGTATATAATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
45769546 ATGTGAAAGTGTATACATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATA-ATGTGATAAGGCCTAATGGCCGATGTGATGA
45769595 ATGTGAAAGTGTATAT-ATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATAATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * *
45769642 ATGTGAAAGTGTATAT-ATGTGACAGGGCCGAGTGGCC-ACGTGATGG
1 ATGTGAAAGTGTATATAATGTGATAAGGCCTAATGGCCGATGTGATGA
45769688 ATGTGAAAGTGTATA-AATGTGATAAG
1 ATGTGAAAGTGTATATAATGTGATAAG
45769714 TCCCGAAGGG
Statistics
Matches: 435, Mismatches: 22, Indels: 9
0.93 0.05 0.02
Matches are distributed among these distances:
46 30 0.07
47 108 0.25
49 297 0.68
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.28
Consensus pattern (48 bp):
ATGTGAAAGTGTATATAATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:45769888 original size:37 final size:37
Alignment explanation
Indices: 45769832--45769910 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
45769822 CAGAGGTCTA
* * *
45769832 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
45769869 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
45769906 AAGAC
1 AAGAC
45769911 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:45772882 original size:16 final size:16
Alignment explanation
Indices: 45772858--45772900 Score: 50
Period size: 18 Copynumber: 2.6 Consensus size: 16
45772848 TAAAAATAAT
* *
45772858 TTAAAATATAATTTTA
1 TTAATATATAAATTTA
45772874 TTAATATATATAAATTTA
1 TT-A-ATATATAAATTTA
45772892 TTAATATAT
1 TTAATATAT
45772901 GTAAAAACAG
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
16 8 0.35
17 2 0.09
18 13 0.57
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
TTAATATATAAATTTA
Found at i:45772886 original size:18 final size:18
Alignment explanation
Indices: 45772863--45772905 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
45772853 ATAATTTAAA
*
45772863 ATATAATTTTATTAATAT
1 ATATAAATTTATTAATAT
45772881 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
*
45772899 ATGTAAA
1 ATATAAA
45772906 AACAGTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (18 bp):
ATATAAATTTATTAATAT
Found at i:45773026 original size:20 final size:19
Alignment explanation
Indices: 45772981--45773018 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
45772971 CATCCAAACA
45772981 CCAGAAAAGTAAATCATTT
1 CCAGAAAAGTAAATCATTT
45773000 CCAGAAAAGTAAATCATTT
1 CCAGAAAAGTAAATCATTT
45773019 TTCAGAAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.16, G:0.11, T:0.26
Consensus pattern (19 bp):
CCAGAAAAGTAAATCATTT
Found at i:45785491 original size:48 final size:48
Alignment explanation
Indices: 45785435--45785563 Score: 222
Period size: 48 Copynumber: 2.7 Consensus size: 48
45785425 TGATATGTGT
45785435 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGAGATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGAGATACAA
*
45785483 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATAGATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGAGATACAA
* * *
45785531 GCCAGTGTATGACATGTATGGGACATGCATCGG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGG
45785564 AAGACATGTC
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 77 1.00
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.22
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGAGATACAA
Found at i:45785579 original size:25 final size:25
Alignment explanation
Indices: 45785541--45785588 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
45785531 GCCAGTGTAT
*
45785541 GACATGTATGGGACATGCATCGGAA
1 GACATGTATAGGACATGCATCGGAA
*
45785566 GACATGTCTAGGACATGCATCGG
1 GACATGTATAGGACATGCATCGG
45785589 TATTGAGACG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.29, C:0.19, G:0.31, T:0.21
Consensus pattern (25 bp):
GACATGTATAGGACATGCATCGGAA
Found at i:45785796 original size:48 final size:49
Alignment explanation
Indices: 45785693--45785823 Score: 167
Period size: 48 Copynumber: 2.7 Consensus size: 49
45785683 CTTGTTGTGT
* * *
45785693 GTCAGTGTAAGACCTGTCTGGGACATGGCATTGACACCGATAGATGAGA
1 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACCAATAGATGAAA
* * * *
45785742 GCCAGTGTAAGACCTGT-TGGGACACGGCATCGGC-CTCAATATATGAAA
1 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACAC-CAATAGATGAAA
*
45785790 GTCAGTGTAAGACCTGTCTAGGACATGGCATCGA
1 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGA
45785824 GTTTGATGTG
Statistics
Matches: 69, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
47 1 0.01
48 39 0.57
49 29 0.42
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (49 bp):
GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACCAATAGATGAAA
Found at i:45796420 original size:46 final size:46
Alignment explanation
Indices: 45796370--45796495 Score: 225
Period size: 46 Copynumber: 2.7 Consensus size: 46
45796360 TGGTTGAGCA
*
45796370 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
45796416 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
45796462 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
45796496 GGGGTGGGTT
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:45803927 original size:46 final size:46
Alignment explanation
Indices: 45803877--45804049 Score: 185
Period size: 46 Copynumber: 3.7 Consensus size: 46
45803867 TGGTTGGGCA
45803877 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAATG
* * *
45803923 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAA-T--G
* *
45803968 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAATG
** *
45804016 -CTCGAGGTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
45804050 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 11, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 4 0.04
46 58 0.55
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAATG
Found at i:45804032 original size:93 final size:93
Alignment explanation
Indices: 45803873--45804044 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
45803863 AGGATGGTTG
* *
45803873 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
45803938 TTGAGTCCGAGTTCGTGAAATGTAACTA
66 TTGAGTCCGAGTTCGTGAAATGTAACTA
**
45803966 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CTCGAGGTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTC-CGAACTCGTTGA
*
45804030 GTTGAGTCTGAGTTC
65 GTTGAGTCCGAGTTC
45804045 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 1 0.01
93 72 0.99
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAAATGTAACTA
Found at i:45807097 original size:40 final size:40
Alignment explanation
Indices: 45807053--45807274 Score: 283
Period size: 40 Copynumber: 5.6 Consensus size: 40
45807043 GCTACTCGTT
* *
45807053 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
45807093 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
45807133 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
45807173 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
45807212 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
45807253 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
45807275 AGACATCATT
Statistics
Matches: 161, Mismatches: 13, Indels: 16
0.85 0.07 0.08
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 114 0.71
41 14 0.09
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:45807231 original size:119 final size:120
Alignment explanation
Indices: 45807055--45807270 Score: 305
Period size: 119 Copynumber: 1.8 Consensus size: 120
45807045 TACTCGTTCA
* *
45807055 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGTT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGAT
*
45807120 ATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * *
45807175 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCACACAAATGCCTTCGGGA-CTTAGCCCGG
* *
45807237 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTA
45807271 GCCCAGACAT
Statistics
Matches: 85, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
118 4 0.05
119 61 0.72
120 20 0.24
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:45809700 original size:11 final size:11
Alignment explanation
Indices: 45809664--45809719 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
45809654 CATGGTATGT
45809664 ATGATATGCAC
1 ATGATATGCAC
* *
45809675 ATGACATG--T
1 ATGATATGCAC
45809684 ATGATATGCAC
1 ATGATATGCAC
*
45809695 ATGATATG--T
1 ATGATATGCAC
45809704 ATGATATGCAC
1 ATGATATGCAC
45809715 ATGAT
1 ATGAT
45809720 CTAATCACAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:45809719 original size:20 final size:20
Alignment explanation
Indices: 45809653--45809719 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
45809643 ATTTTGATAA
*
45809653 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
45809673 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
45809693 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
45809713 ACATGAT
1 ACATGAT
45809720 CTAATCACAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:45809801 original size:23 final size:23
Alignment explanation
Indices: 45809771--45809843 Score: 110
Period size: 23 Copynumber: 3.1 Consensus size: 23
45809761 AGGAAGTGAA
45809771 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
45809794 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* * *
45809817 AAAAGGGTTTTTTCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
45809841 AAA
1 AAA
45809844 AGAGGCTAGG
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
23 26 0.57
24 20 0.43
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:45809833 original size:24 final size:24
Alignment explanation
Indices: 45809770--45809850 Score: 119
Period size: 24 Copynumber: 3.4 Consensus size: 24
45809760 GAGGAAGTGA
45809770 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
45809794 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* * *
45809817 AAAAGGGTTTTTTCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
45809841 AAAAGAGGCT
1 AAAAG-GGCT
45809851 AGGCCTCTAG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
23 23 0.45
24 25 0.49
25 3 0.06
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.31
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:45816346 original size:76 final size:76
Alignment explanation
Indices: 45816220--45816360 Score: 273
Period size: 76 Copynumber: 1.9 Consensus size: 76
45816210 AGAAATGCCG
*
45816220 AGTGTTCACCAACCATAAAAGCCTCAAGTATTTGATGACTCAAAAGGAGTTGAACCTACGACAAC
1 AGTGTTCACCAACCATAAAAGCCTCAAGTATTTGATGACTCAAAAGGAGTTAAACCTACGACAAC
45816285 CATAAAAGCCT
66 CATAAAAGCCT
45816296 AGTGTTCACCAACCATAAAAGCCTCAAGTATTTGATGACTCAAAAGGAGTTAAACCTACGACAAC
1 AGTGTTCACCAACCATAAAAGCCTCAAGTATTTGATGACTCAAAAGGAGTTAAACCTACGACAAC
45816361 GGAGATGGTG
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
76 64 1.00
ACGTcount: A:0.40, C:0.23, G:0.16, T:0.21
Consensus pattern (76 bp):
AGTGTTCACCAACCATAAAAGCCTCAAGTATTTGATGACTCAAAAGGAGTTAAACCTACGACAAC
CATAAAAGCCT
Found at i:45817121 original size:23 final size:23
Alignment explanation
Indices: 45817095--45817142 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
45817085 CCCTTGTGGA
45817095 TTATTTCAAATAGAGACCCGAGG
1 TTATTTCAAATAGAGACCCGAGG
45817118 TTATTTCAAATAGAGACCCGAGG
1 TTATTTCAAATAGAGACCCGAGG
45817141 TT
1 TT
45817143 TACCTCACGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (23 bp):
TTATTTCAAATAGAGACCCGAGG
Found at i:45851079 original size:42 final size:42
Alignment explanation
Indices: 45850968--45851089 Score: 138
Period size: 43 Copynumber: 2.9 Consensus size: 42
45850958 AGTTCTATAC
* * * * *
45850968 CAATGCTATATCCTAGATATAGTCTTGCATGTAATCTCATAT
1 CAATGCCATATCCCAGATATGGTCTTACATGTAATCTCAAAT
* * *
45851010 CGATGCCAATAGCCCAGCTATGGTCTTACATG-AAGTCTCAAAT
1 CAATGCC-ATATCCCAGATATGGTCTTACATGTAA-TCTCAAAT
*
45851053 CAATGCCATATCCCAGATATGGTCTTACACGTAATCT
1 CAATGCCATATCCCAGATATGGTCTTACATGTAATCT
45851090 TAGTAACCCT
Statistics
Matches: 65, Mismatches: 12, Indels: 6
0.78 0.14 0.07
Matches are distributed among these distances:
42 31 0.48
43 34 0.52
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (42 bp):
CAATGCCATATCCCAGATATGGTCTTACATGTAATCTCAAAT
Found at i:45857796 original size:180 final size:180
Alignment explanation
Indices: 45857494--45857853 Score: 603
Period size: 180 Copynumber: 2.0 Consensus size: 180
45857484 TTAGGCCATG
* * *
45857494 CTCACACCATAGGTGGAGAAACGGTCGTGTGATACGACCGTGTGAAAACAGGGCAAGATTTTTCC
1 CTCACACCATAGGTGGAGAAACGGCCGTGCGATACGACCATGTGAAAACAGGGCAAGATTTTTCC
*
45857559 CCAACACGGGATGAAATAAGTTACAACAGTCGTGCGACATGGCCGTGGTCAAAACTGCCAAAACA
66 CCAACACGAGATGAAATAAGTTACAACAGTCGTGCGACATGGCCGTGGTCAAAACTGCCAAAACA
* * *
45857624 ACATGGGCATGAGACACGCCCGTGCCTTGAAACTATGGTTGAAATTGAGA
131 ACACGGGCATGAGACACGCCCATGCCTTGAAACTATGGTTGAAACTGAGA
*
45857674 CTCACACCATAGGTGGAGAAACGGCCGTGCGATACGACCATGTGAAAATAGGGCAAGATTTTTCC
1 CTCACACCATAGGTGGAGAAACGGCCGTGCGATACGACCATGTGAAAACAGGGCAAGATTTTTCC
* * * *
45857739 CCAACACGAGATGCAATAAGTTACCACAGTCGTGCGACATGGTCGTGGTCGAAACTGCCAAAACA
66 CCAACACGAGATGAAATAAGTTACAACAGTCGTGCGACATGGCCGTGGTCAAAACTGCCAAAACA
*
45857804 ACACGGGCATGAGACACGCCCATGCCTTGAAACTGTGGTTGAAACTGAGA
131 ACACGGGCATGAGACACGCCCATGCCTTGAAACTATGGTTGAAACTGAGA
45857854 ATGTAACAGG
Statistics
Matches: 167, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
180 167 1.00
ACGTcount: A:0.32, C:0.23, G:0.26, T:0.19
Consensus pattern (180 bp):
CTCACACCATAGGTGGAGAAACGGCCGTGCGATACGACCATGTGAAAACAGGGCAAGATTTTTCC
CCAACACGAGATGAAATAAGTTACAACAGTCGTGCGACATGGCCGTGGTCAAAACTGCCAAAACA
ACACGGGCATGAGACACGCCCATGCCTTGAAACTATGGTTGAAACTGAGA
Found at i:45860264 original size:18 final size:18
Alignment explanation
Indices: 45860241--45860286 Score: 92
Period size: 18 Copynumber: 2.6 Consensus size: 18
45860231 ATGATTATAA
45860241 ATCTATCTTTTTCAATAT
1 ATCTATCTTTTTCAATAT
45860259 ATCTATCTTTTTCAATAT
1 ATCTATCTTTTTCAATAT
45860277 ATCTATCTTT
1 ATCTATCTTT
45860287 GTACATTGAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.26, C:0.17, G:0.00, T:0.57
Consensus pattern (18 bp):
ATCTATCTTTTTCAATAT
Found at i:45879269 original size:15 final size:14
Alignment explanation
Indices: 45879251--45879295 Score: 63
Period size: 15 Copynumber: 3.1 Consensus size: 14
45879241 TATTCTTGAA
*
45879251 TTTCATGTAATATT
1 TTTCATGTCATATT
45879265 CTTTCATGTCATATT
1 -TTTCATGTCATATT
45879280 TTCTCATGTCATATT
1 TT-TCATGTCATATT
45879295 T
1 T
45879296 CCATATCATA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
14 2 0.07
15 26 0.93
ACGTcount: A:0.22, C:0.16, G:0.07, T:0.56
Consensus pattern (14 bp):
TTTCATGTCATATT
Found at i:45888146 original size:40 final size:40
Alignment explanation
Indices: 45888091--45888361 Score: 431
Period size: 40 Copynumber: 6.8 Consensus size: 40
45888081 GCATTTGTAT
*
45888091 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTCG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
45888131 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
45888171 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
45888211 ATATATCTGGGCTAAGA-CCG-AGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* *
45888249 ATATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
45888289 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* * * *
45888329 CTAT-GCCCGGCTAAGACCCGAAGGCAATTGTGC
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGC
45888362 TTGTGGTAAT
Statistics
Matches: 214, Mismatches: 15, Indels: 5
0.91 0.06 0.02
Matches are distributed among these distances:
38 34 0.16
39 31 0.14
40 149 0.70
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.24
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
Found at i:45888301 original size:118 final size:120
Alignment explanation
Indices: 45888091--45888361 Score: 431
Period size: 118 Copynumber: 2.3 Consensus size: 120
45888081 GCATTTGTAT
*
45888091 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTCGATATATCCGGGCTAAGACCCGCAGG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTCGATATATCCGGGCTAAGACCCGAAGG
* * *
45888156 CATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
66 CAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* *
45888211 ATATATCTGGGCTAAGA-CCG-AGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTCGATATATCCGGGCTAAGACCCGAAGG
45888274 CAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
66 CAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
45888329 CTAT-GCCCGGCTAAGACCCGAAGGCAATTGTGC
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGC
45888362 TTGTGGTAAT
Statistics
Matches: 138, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
117 9 0.07
118 99 0.72
119 14 0.10
120 16 0.12
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.24
Consensus pattern (120 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTCGATATATCCGGGCTAAGACCCGAAGG
CAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:45896591 original size:39 final size:38
Alignment explanation
Indices: 45896471--45896690 Score: 260
Period size: 39 Copynumber: 5.9 Consensus size: 38
45896461 GAGCATTTGT
*
45896471 ATATAATCCGGGCTAAGACCCGAAGGCA-TTGTG-AGTCG
1 ATAT-ATCCGGGCTAAGA-CCGAAGGCATTTGTGCAGTTG
45896509 ATATAT-CGGGCTAAGACCG-AGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCGAAGGCATTTGTGC-AGTTG
*
45896546 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCAGTTG
1 ATATATCCGGGCTAAGA-CCGAAGGCATTTGTGCAGTTG
45896585 ATATATCCGGGCTAAGACC-AAGGCA-TTGTGCAG-TG
1 ATATATCCGGGCTAAGACCGAAGGCATTTGTGCAGTTG
*
45896620 A-ATATCC-GGCTAAGACCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCGAAGGCATTTGTGC-AGTTG
* ** *
45896657 CTATGCCCGGGCTAAGACCCGAAGGCAATTGTGC
1 ATATATCCGGGCTAAGA-CCGAAGGCATTTGTGC
45896691 TTGTGGTAAT
Statistics
Matches: 161, Mismatches: 8, Indels: 24
0.83 0.04 0.12
Matches are distributed among these distances:
33 10 0.06
34 17 0.11
35 16 0.10
36 20 0.12
37 19 0.12
38 20 0.12
39 33 0.20
40 26 0.16
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.23
Consensus pattern (38 bp):
ATATATCCGGGCTAAGACCGAAGGCATTTGTGCAGTTG
Found at i:45896653 original size:111 final size:114
Alignment explanation
Indices: 45896471--45896690 Score: 324
Period size: 111 Copynumber: 2.0 Consensus size: 114
45896461 GAGCATTTGT
* *
45896471 ATATAATCCGGGCTAAGACCCGAAGGCATTGTGAGTCGATATATCGGGCTAAGACCGAGGCATTT
1 ATATAATCCGGGCTAAGACCCGAAGGCATTGTGAGTCGATATATCCGGCTAAGACCGAGGCATTC
* * *
45896536 GTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCAGTTG
66 GTGCGAGTTGATATACCCGGGCTAAGACCCGAAGGCAATTGTGCAGTTG
45896585 ATAT-ATCCGGGCTAAGA-CC-AAGGCATTGTGCAGT-GA-ATATCCGGCTAAGACCGAAGGCAT
1 ATATAATCCGGGCTAAGACCCGAAGGCATTGTG-AGTCGATATATCCGGCTAAGACCG-AGGCAT
* *
45896645 TCGTGCGAGTTGCTATGCCCGGGCTAAGACCCGAAGGCAATTGTGC
64 TCGTGCGAGTTGATATACCCGGGCTAAGACCCGAAGGCAATTGTGC
45896691 TTGTGGTAAT
Statistics
Matches: 97, Mismatches: 7, Indels: 7
0.87 0.06 0.06
Matches are distributed among these distances:
110 16 0.16
111 59 0.61
112 5 0.05
113 13 0.13
114 4 0.04
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.23
Consensus pattern (114 bp):
ATATAATCCGGGCTAAGACCCGAAGGCATTGTGAGTCGATATATCCGGCTAAGACCGAGGCATTC
GTGCGAGTTGATATACCCGGGCTAAGACCCGAAGGCAATTGTGCAGTTG
Found at i:45896667 original size:72 final size:76
Alignment explanation
Indices: 45896471--45896690 Score: 258
Period size: 74 Copynumber: 2.9 Consensus size: 76
45896461 GAGCATTTGT
* * *
45896471 ATATAATCCGGGCTAAGACCCGAAGGCATT-GTG-AGTCGATATA-TCGGGCTAAGACCGAGGCA
1 ATAT-ATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTTGATATACCCGGGCTAAGACCAAGGCA
45896533 TTTGTGCGAGTTG
65 -TTGTGCGAGTTG
* * *
45896546 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCAGTTGATATATCCGGGCTAAGACCAAGGCAT
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTTGATATACCCGGGCTAAGACCAAGGCAT
45896611 TGTGC-AG-TG
66 TGTGCGAGTTG
* *
45896620 A-ATATCC-GGCTAAGA-CCGAAGGCATTCGTGCGAGTTGCTATGCCCGGGCTAAGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTTGATATACCCGGGCTAAGA-CC-AAGG
45896682 CAATTGTGC
63 C-ATTGTGC
45896691 TTGTGGTAAT
Statistics
Matches: 129, Mismatches: 9, Indels: 14
0.85 0.06 0.09
Matches are distributed among these distances:
71 14 0.11
72 27 0.21
73 8 0.06
74 32 0.25
75 16 0.12
76 15 0.12
77 17 0.13
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.23
Consensus pattern (76 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTTGATATACCCGGGCTAAGACCAAGGCAT
TGTGCGAGTTG
Found at i:45904964 original size:40 final size:40
Alignment explanation
Indices: 45904907--45905136 Score: 327
Period size: 40 Copynumber: 5.8 Consensus size: 40
45904897 ATTTGAATAC
* * * *
45904907 ATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTTT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGA-TAT
45904947 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
45904987 ATCCGGGCTAAGATCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* *
45905027 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGATGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* * *
45905067 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* * *
45905107 ACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
45905137 TTGTGGTTAT
Statistics
Matches: 174, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
40 171 0.98
41 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
Done.