Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 144 of 255
Found at i:46683002 original size:27 final size:27
Alignment explanation
Indices: 46682972--46683295 Score: 233
Period size: 27 Copynumber: 12.0 Consensus size: 27
46682962 GCTAAATCTA
* *
46682972 CAAACCAAGGGCATTTCGGTAATTTTG
1 CAAATCAAGGGTATTTCGGTAATTTTG
* ** *
46682999 CAAACCAATAGTATTTCTGTAATTTTTG
1 CAAATCAAGGGTATTTCGGTAA-TTTTG
**
46683027 -AAAGTCAAGGGTATTTCTATAATTTTG
1 CAAA-TCAAGGGTATTTCGGTAATTTTG
* * * *
46683054 TAAATCAAGAGTATTTCTGTAATTTTC
1 CAAATCAAGGGTATTTCGGTAATTTTG
* * *
46683081 CAAATTAAGTGTATTTCGGTAATTTTC
1 CAAATCAAGGGTATTTCGGTAATTTTG
* * ** *
46683108 CAAATTAGGGGTATTTTAGTAATTTTA
1 CAAATCAAGGGTATTTCGGTAATTTTG
** * **
46683135 CAAATTGAGGGTATTTAGGTAATTTCA
1 CAAATCAAGGGTATTTCGGTAATTTTG
* *
46683162 CAAATCAAGGGTATTTTGGTAATTTTA
1 CAAATCAAGGGTATTTCGGTAATTTTG
* * * *
46683189 CAAACCAGGGGTATTTTGGTAATTTTA
1 CAAATCAAGGGTATTTCGGTAATTTTG
* *
46683216 CAAA-CTAGAGGTATTTTGGTAATTTTG
1 CAAATCAAG-GGTATTTCGGTAATTTTG
* * *
46683243 CTAATTGAA-GGTATTTTGGTAATTTTG
1 C-AAATCAAGGGTATTTCGGTAATTTTG
* * *
46683270 TAAACCAAGGGTATTT-AGTAATTTTG
1 CAAATCAAGGGTATTTCGGTAATTTTG
46683296 TAAACCAGCC
Statistics
Matches: 248, Mismatches: 42, Indels: 15
0.81 0.14 0.05
Matches are distributed among these distances:
26 15 0.06
27 208 0.84
28 24 0.10
29 1 0.00
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
CAAATCAAGGGTATTTCGGTAATTTTG
Found at i:46683157 original size:81 final size:80
Alignment explanation
Indices: 46683072--46683294 Score: 263
Period size: 81 Copynumber: 2.8 Consensus size: 80
46683062 GAGTATTTCT
* * **
46683072 GTAATTTTCCAAATTAAGTGTATTTCGGTAATTTTCCAAATTAGGGGTATTTTAGTAATTTTACA
1 GTAATTTTCCAAATTAAG-GTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACA
*
46683137 AA-TTGAGGGTATTTAG
65 AACTAGA-GGTATTTAG
* *
46683153 GTAA-TTTCACAAATCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTAC
1 GTAATTTTC-CAAATTAA-GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTAC
*
46683217 AAACTAGAGGTATTTTG
64 AAACTAGAGGTATTTAG
* * ** *
46683234 GTAATTTTGCTAATTGAAGGTATTTTGGTAATTTTGTAAACCAAGGGTA-TTTAGTAATTTT
1 GTAATTTTCCAAATT-AAGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTT
46683295 GTAAACCAGC
Statistics
Matches: 122, Mismatches: 15, Indels: 11
0.82 0.10 0.07
Matches are distributed among these distances:
80 15 0.12
81 98 0.80
82 9 0.07
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (80 bp):
GTAATTTTCCAAATTAAGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAA
ACTAGAGGTATTTAG
Found at i:46683703 original size:22 final size:22
Alignment explanation
Indices: 46683659--46683723 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
46683649 GCAAATTCGT
*
46683659 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
*
46683681 TTGGCACAAAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
** *
46683703 TTGGTGCAAAGGCATAATCAG
1 TTGGCACAAAGCCATAATCAG
46683724 AATAATTGGA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 2 0.06
22 31 0.89
23 2 0.06
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:46683961 original size:40 final size:41
Alignment explanation
Indices: 46683868--46683986 Score: 186
Period size: 40 Copynumber: 2.9 Consensus size: 41
46683858 AAGCCACCGA
* *
46683868 TGGATCCACGGTCGTCAAGCAACCATGCGATCCTTAATCGG
1 TGGATCCACGGTCGTCAAGCAACCATACGATCCTCAATCGG
46683909 TGGATCCACGGTCGTCAAGCAACCATACGATCCTCAA-CGG
1 TGGATCCACGGTCGTCAAGCAACCATACGATCCTCAATCGG
* * *
46683949 TGGAGCCACGGTCGTCAAGCAGCCATTCGATCCTCAAT
1 TGGATCCACGGTCGTCAAGCAACCATACGATCCTCAAT
46683987 TAATTCCTCC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
40 37 0.51
41 35 0.49
ACGTcount: A:0.25, C:0.31, G:0.24, T:0.20
Consensus pattern (41 bp):
TGGATCCACGGTCGTCAAGCAACCATACGATCCTCAATCGG
Found at i:46684276 original size:27 final size:27
Alignment explanation
Indices: 46684246--46684568 Score: 244
Period size: 27 Copynumber: 12.0 Consensus size: 27
46684236 GGTAAATCTA
*
46684246 CAAACCAAGGGTATTTCGGTAATTTTG
1 CAAATCAAGGGTATTTCGGTAATTTTG
** *
46684273 CAAA-CTAATAGTATTTCTGTAATTTTTG
1 CAAATC-AAGGGTATTTCGGTAA-TTTTG
**
46684301 -AAAGTCAAGGGTATTTCTATAATTTTG
1 CAAA-TCAAGGGTATTTCGGTAATTTTG
* * *
46684328 TAAATCAAGAGTATTTCTGTAATTTTG
1 CAAATCAAGGGTATTTCGGTAATTTTG
* * *
46684355 CAAATTAAGTGTATTTCGGTAATTTTC
1 CAAATCAAGGGTATTTCGGTAATTTTG
* * ** *
46684382 CAAATTAGGGGTATTTTAGTAATTTTA
1 CAAATCAAGGGTATTTCGGTAATTTTG
** * **
46684409 CAAATTGAGGGTATTTAGGTAATTTCA
1 CAAATCAAGGGTATTTCGGTAATTTTG
* *
46684436 CAAATCAAGGGTATTTTGGTAATTTTA
1 CAAATCAAGGGTATTTCGGTAATTTTG
* * *
46684463 CAAA-CCAGGGTATTTTGGTAATTTTA
1 CAAATCAAGGGTATTTCGGTAATTTTG
* *
46684489 CAAA-CTAGAGGTATTTTGGTAATTTTG
1 CAAATCAAG-GGTATTTCGGTAATTTTG
* * *
46684516 CTAATTGAA-GGTATTTTGGTAATTTTG
1 C-AAATCAAGGGTATTTCGGTAATTTTG
* * *
46684543 TAAACCAAGGGTA-TTCAGTAATTTTG
1 CAAATCAAGGGTATTTCGGTAATTTTG
46684569 TAAACCAGCC
Statistics
Matches: 248, Mismatches: 39, Indels: 19
0.81 0.13 0.06
Matches are distributed among these distances:
26 44 0.18
27 179 0.72
28 23 0.09
29 2 0.01
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
CAAATCAAGGGTATTTCGGTAATTTTG
Found at i:46684433 original size:81 final size:79
Alignment explanation
Indices: 46684253--46684567 Score: 269
Period size: 80 Copynumber: 3.9 Consensus size: 79
46684243 CTACAAACCA
* * **
46684253 AGGGTATTTCGGTAATTTTGCAAACTAA-TAGTATTTCTGTAATTTTTGAAAGTCAAGGGTATTT
1 AGGGTATTTCGGTAATTTTGCAAATTAAGT-GTATTTCGGTAATTTTACAAA-TC-AGGGTATTT
** *
46684317 CTA-TAATTTTGTAAATCA
63 -TAGTAATTTTACAAAT-T
* * * *
46684335 AGAGTATTTCTGTAATTTTGCAAATTAAGTGTATTTCGGTAATTTTCCAAATTAGGGGTATTTTA
1 AGGGTATTTCGGTAATTTTGCAAATTAAGTGTATTTCGGTAATTTTACAAATCA-GGGTATTTTA
46684400 GTAATTTTACAAATT
65 GTAATTTTACAAATT
* ** * * * * *
46684415 GAGGGTATTTAGGTAATTTCACAAATCAAGGGTATTTTGGTAATTTTACAAACCAGGGTATTTTG
1 -AGGGTATTTCGGTAATTTTGCAAATTAAGTGTATTTCGGTAATTTTACAAATCAGGGTATTTTA
*
46684480 GTAATTTTACAAACT
65 GTAATTTTACAAATT
* * * ** *
46684495 AGAGGTATTTTGGTAATTTTGCTAATTGAAG-GTATTTTGGTAATTTTGTAAACCAAGGGTA-TT
1 AG-GGTATTTCGGTAATTTTGCAAATT-AAGTGTATTTCGGTAATTTTACAAATC-AGGGTATTT
*
46684558 CAGTAATTTT
63 TAGTAATTTT
46684568 GTAAACCAGC
Statistics
Matches: 194, Mismatches: 32, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
79 2 0.01
80 76 0.39
81 72 0.37
82 43 0.22
83 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (79 bp):
AGGGTATTTCGGTAATTTTGCAAATTAAGTGTATTTCGGTAATTTTACAAATCAGGGTATTTTAG
TAATTTTACAAATT
Found at i:46684960 original size:22 final size:22
Alignment explanation
Indices: 46684932--46684996 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
46684922 GCAAATTCGT
*
46684932 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
*
46684954 TTGGCACAAAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
**
46684976 TTGGTGCAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
46684997 AATAATTGGA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:46685197 original size:41 final size:40
Alignment explanation
Indices: 46685134--46685257 Score: 158
Period size: 40 Copynumber: 3.1 Consensus size: 40
46685124 GGATTAAAAC
* *
46685134 CAACGATGGATCCACGGTCGTCAAGCAACCATGCGATCCT
1 CAACGGTGGATCCACGGTCGTCAAGCAACCATACGATCCT
* *
46685174 TAATCGGTGGATCCACGGTCGTCAAGCAACCATATGATCCT
1 CAA-CGGTGGATCCACGGTCGTCAAGCAACCATACGATCCT
* * ** *
46685215 CAACGGTAGAGCCACGACCGTCAAGCAACCATTCGATCCT
1 CAACGGTGGATCCACGGTCGTCAAGCAACCATACGATCCT
46685255 CAA
1 CAA
46685258 TTTCTTCCTC
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
40 36 0.50
41 36 0.50
ACGTcount: A:0.29, C:0.31, G:0.21, T:0.19
Consensus pattern (40 bp):
CAACGGTGGATCCACGGTCGTCAAGCAACCATACGATCCT
Found at i:46685548 original size:27 final size:27
Alignment explanation
Indices: 46685518--46685841 Score: 233
Period size: 27 Copynumber: 12.0 Consensus size: 27
46685508 GCTAAATCTA
* *
46685518 CAAACCAAGGGCATTTCGGTAATTTTG
1 CAAATCAAGGGTATTTCGGTAATTTTG
* ** *
46685545 CAAACCAATAGTATTTCTGTAATTTTTG
1 CAAATCAAGGGTATTTCGGTAA-TTTTG
**
46685573 -AAAGTCAAGGGTATTTCTATAATTTTG
1 CAAA-TCAAGGGTATTTCGGTAATTTTG
* * * *
46685600 TAAATCAAGAGTATTTCTGTAATTTTC
1 CAAATCAAGGGTATTTCGGTAATTTTG
* * *
46685627 CAAATTAAGTGTATTTCGGTAATTTTC
1 CAAATCAAGGGTATTTCGGTAATTTTG
* * ** *
46685654 CAAATTAGGGGTATTTTAGTAATTTTA
1 CAAATCAAGGGTATTTCGGTAATTTTG
** * **
46685681 CAAATTGAGGGTATTTAGGTAATTTCA
1 CAAATCAAGGGTATTTCGGTAATTTTG
* *
46685708 CAAATCAAGGGTATTTTGGTAATTTTA
1 CAAATCAAGGGTATTTCGGTAATTTTG
* * * *
46685735 CAAACCAGGGGTATTTTGGTAATTTTA
1 CAAATCAAGGGTATTTCGGTAATTTTG
* *
46685762 CAAA-CTAGAGGTATTTTGGTAATTTTG
1 CAAATCAAG-GGTATTTCGGTAATTTTG
* * *
46685789 CTAATTGAA-GGTATTTTGGTAATTTTG
1 C-AAATCAAGGGTATTTCGGTAATTTTG
* * *
46685816 TAAACCAAGGGTATTT-AGTAATTTTG
1 CAAATCAAGGGTATTTCGGTAATTTTG
46685842 TAAACCAGCC
Statistics
Matches: 248, Mismatches: 42, Indels: 15
0.81 0.14 0.05
Matches are distributed among these distances:
26 15 0.06
27 208 0.84
28 24 0.10
29 1 0.00
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
CAAATCAAGGGTATTTCGGTAATTTTG
Found at i:46685703 original size:81 final size:80
Alignment explanation
Indices: 46685618--46685840 Score: 263
Period size: 81 Copynumber: 2.8 Consensus size: 80
46685608 GAGTATTTCT
* * **
46685618 GTAATTTTCCAAATTAAGTGTATTTCGGTAATTTTCCAAATTAGGGGTATTTTAGTAATTTTACA
1 GTAATTTTCCAAATTAAG-GTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACA
*
46685683 AA-TTGAGGGTATTTAG
65 AACTAGA-GGTATTTAG
* *
46685699 GTAA-TTTCACAAATCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTAC
1 GTAATTTTC-CAAATTAA-GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTAC
*
46685763 AAACTAGAGGTATTTTG
64 AAACTAGAGGTATTTAG
* * ** *
46685780 GTAATTTTGCTAATTGAAGGTATTTTGGTAATTTTGTAAACCAAGGGTA-TTTAGTAATTTT
1 GTAATTTTCCAAATT-AAGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTT
46685841 GTAAACCAGC
Statistics
Matches: 122, Mismatches: 15, Indels: 11
0.82 0.10 0.07
Matches are distributed among these distances:
80 15 0.12
81 98 0.80
82 9 0.07
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (80 bp):
GTAATTTTCCAAATTAAGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAA
ACTAGAGGTATTTAG
Found at i:46686249 original size:22 final size:22
Alignment explanation
Indices: 46686205--46686268 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
46686195 GCAAATTCGT
*
46686205 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
*
46686227 TTGGCACAAAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
**
46686249 TTGGTGCAAAG-CATAATCAG
1 TTGGCACAAAGCCATAATCAG
46686269 AATAATTGGA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
21 7 0.20
22 28 0.80
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:46686506 original size:40 final size:41
Alignment explanation
Indices: 46686413--46686531 Score: 186
Period size: 40 Copynumber: 2.9 Consensus size: 41
46686403 AAGCCACCGA
* *
46686413 TGGATCCACGGTCGTCAAGCAACCATGCGATCCTTAATCGG
1 TGGATCCACGGTCGTCAAGCAACCATACGATCCTCAATCGG
46686454 TGGATCCACGGTCGTCAAGCAACCATACGATCCTCAA-CGG
1 TGGATCCACGGTCGTCAAGCAACCATACGATCCTCAATCGG
* * *
46686494 TGGAGCCACGGTCGTCAAGCAGCCATTCGATCCTCAAT
1 TGGATCCACGGTCGTCAAGCAACCATACGATCCTCAAT
46686532 TAATTCCTCC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
40 37 0.51
41 35 0.49
ACGTcount: A:0.25, C:0.31, G:0.24, T:0.20
Consensus pattern (41 bp):
TGGATCCACGGTCGTCAAGCAACCATACGATCCTCAATCGG
Found at i:46686821 original size:27 final size:27
Alignment explanation
Indices: 46686791--46687112 Score: 235
Period size: 27 Copynumber: 12.0 Consensus size: 27
46686781 GGTAAATCTA
*
46686791 CAAACCAAGGGTATTTCGGTAATTTTG
1 CAAATCAAGGGTATTTCGGTAATTTTG
** *
46686818 CAAA-CTAATAGTATTTCTGTAATTTTTG
1 CAAATC-AAGGGTATTTCGGTAA-TTTTG
**
46686846 -AAAGTCAAGGGTATTTCTATAATTTTG
1 CAAA-TCAAGGGTATTTCGGTAATTTTG
* * *
46686873 TAAATCAAGAGTATTTCTGTAATTTTG
1 CAAATCAAGGGTATTTCGGTAATTTTG
* * *
46686900 CAAATTAAGTGTATTTCGGTAA-TTTC
1 CAAATCAAGGGTATTTCGGTAATTTTG
* * ** *
46686926 CAAATTAGGGGTATTTTAGTAATTTTA
1 CAAATCAAGGGTATTTCGGTAATTTTG
** * **
46686953 CAAATTGAGGGTATTTAGGTAATTTCA
1 CAAATCAAGGGTATTTCGGTAATTTTG
* *
46686980 CAAATCAAGGGTATTTTGGTAATTTTA
1 CAAATCAAGGGTATTTCGGTAATTTTG
* * *
46687007 CAAA-CCAGGGTATTTTGGTAATTTTA
1 CAAATCAAGGGTATTTCGGTAATTTTG
* *
46687033 CAAA-CTAGAGGTATTTTGGTAATTTTG
1 CAAATCAAG-GGTATTTCGGTAATTTTG
* * *
46687060 CTAATTGAA-GGTATTTTGGTAATTTTG
1 C-AAATCAAGGGTATTTCGGTAATTTTG
* * *
46687087 TAAACCAAGGGTA-TTCAGTAATTTTG
1 CAAATCAAGGGTATTTCGGTAATTTTG
46687113 TAAACCAGCC
Statistics
Matches: 246, Mismatches: 39, Indels: 21
0.80 0.13 0.07
Matches are distributed among these distances:
26 65 0.26
27 156 0.63
28 23 0.09
29 2 0.01
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
CAAATCAAGGGTATTTCGGTAATTTTG
Found at i:46686859 original size:55 final size:54
Alignment explanation
Indices: 46686791--46687112 Score: 232
Period size: 53 Copynumber: 6.0 Consensus size: 54
46686781 GGTAAATCTA
* *
46686791 CAAACCAAGGGTATTTCGGTAATTTTGCAAA-CTAATAGTATTTCTGTAATTTTTG
1 CAAATCAAGGGTATTTCGGTAATTTTGCAAATC-AAGAGTATTTCTGTAA-TTTTG
** *
46686846 -AAAGTCAAGGGTATTTCTATAATTTTGTAAATCAAGAGTATTTCTGTAATTTTG
1 CAAA-TCAAGGGTATTTCGGTAATTTTGCAAATCAAGAGTATTTCTGTAATTTTG
* * * * * * *
46686900 CAAATTAAGTGTATTTCGGTAA-TTTCCAAATTAGGGGTATTT-TAGTAATTTTA
1 CAAATCAAGGGTATTTCGGTAATTTTGCAAATCAAGAGTATTTCT-GTAATTTTG
** * ** * *
46686953 CAAATTGAGGGTATTTAGGTAATTTCACAAATCAAGGGTATTT-TGGTAATTTTA
1 CAAATCAAGGGTATTTCGGTAATTTTGCAAATCAAGAGTATTTCT-GTAATTTTG
* * * *
46687007 CAAA-CCAGGGTATTTTGGTAATTTTACAAA-CTAGAGGTATTT-TGGTAATTTTG
1 CAAATCAAGGGTATTTCGGTAATTTTGCAAATCAAGA-GTATTTCT-GTAATTTTG
* * * * * * *
46687060 CTAATTGAA-GGTATTTTGGTAATTTTGTAAACCAAGGGTA-TTCAGTAATTTTG
1 C-AAATCAAGGGTATTTCGGTAATTTTGCAAATCAAGAGTATTTCTGTAATTTTG
46687113 TAAACCAGCC
Statistics
Matches: 219, Mismatches: 38, Indels: 22
0.78 0.14 0.08
Matches are distributed among these distances:
52 4 0.02
53 92 0.42
54 77 0.35
55 45 0.21
56 1 0.00
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.41
Consensus pattern (54 bp):
CAAATCAAGGGTATTTCGGTAATTTTGCAAATCAAGAGTATTTCTGTAATTTTG
Found at i:46686976 original size:80 final size:79
Alignment explanation
Indices: 46686798--46687111 Score: 260
Period size: 80 Copynumber: 3.9 Consensus size: 79
46686788 CTACAAACCA
* * **
46686798 AGGGTATTTCGGTAATTTTGCAAACTAA-TAGTATTTCTGTAATTTTTGAAAGTCAAGGGTATTT
1 AGGGTATTTCGGTAATTTTGCAAATTAAGT-GTATTTCGGTAATTTTACAAA-TC-AGGGTATTT
** *
46686862 CTA-TAATTTTGTAAATCA
63 -TAGTAATTTTACAAAT-T
* * * *
46686880 AGAGTATTTCTGTAATTTTGCAAATTAAGTGTATTTCGGTAA-TTTCCAAATTAGGGGTATTTTA
1 AGGGTATTTCGGTAATTTTGCAAATTAAGTGTATTTCGGTAATTTTACAAATCA-GGGTATTTTA
46686944 GTAATTTTACAAATT
65 GTAATTTTACAAATT
* ** * * * * *
46686959 GAGGGTATTTAGGTAATTTCACAAATCAAGGGTATTTTGGTAATTTTACAAACCAGGGTATTTTG
1 -AGGGTATTTCGGTAATTTTGCAAATTAAGTGTATTTCGGTAATTTTACAAATCAGGGTATTTTA
*
46687024 GTAATTTTACAAACT
65 GTAATTTTACAAATT
* * * ** *
46687039 AGAGGTATTTTGGTAATTTTGCTAATTGAAG-GTATTTTGGTAATTTTGTAAACCAAGGGTA-TT
1 AG-GGTATTTCGGTAATTTTGCAAATT-AAGTGTATTTCGGTAATTTTACAAATC-AGGGTATTT
*
46687102 CAGTAATTTT
63 TAGTAATTTT
46687112 GTAAACCAGC
Statistics
Matches: 192, Mismatches: 32, Indels: 18
0.79 0.13 0.07
Matches are distributed among these distances:
79 5 0.03
80 127 0.66
81 23 0.12
82 36 0.19
83 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (79 bp):
AGGGTATTTCGGTAATTTTGCAAATTAAGTGTATTTCGGTAATTTTACAAATCAGGGTATTTTAG
TAATTTTACAAATT
Found at i:46687504 original size:22 final size:22
Alignment explanation
Indices: 46687476--46687540 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
46687466 GCAAATTCGT
*
46687476 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
*
46687498 TTGGCACAAAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
**
46687520 TTGGTGCAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
46687541 AATAATTGGA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:46687741 original size:41 final size:40
Alignment explanation
Indices: 46687678--46687801 Score: 167
Period size: 40 Copynumber: 3.1 Consensus size: 40
46687668 GGATTAAAAC
* *
46687678 CAACGATGGATCCACGGTCGTCAAGCAACCATGCGATCCT
1 CAACGGTGGATCCACGGTCGTCAAGCAACCATACGATCCT
*
46687718 TAATCGGTGGATCCACGGTCGTCAAGCAACCATACGATCCT
1 CAA-CGGTGGATCCACGGTCGTCAAGCAACCATACGATCCT
* * ** *
46687759 CAACGGTAGAGCCACGACCGTCAAGCAACCATTCGATCCT
1 CAACGGTGGATCCACGGTCGTCAAGCAACCATACGATCCT
46687799 CAA
1 CAA
46687802 TTTCTTCCTC
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
40 37 0.50
41 37 0.50
ACGTcount: A:0.29, C:0.32, G:0.21, T:0.18
Consensus pattern (40 bp):
CAACGGTGGATCCACGGTCGTCAAGCAACCATACGATCCT
Found at i:46688092 original size:27 final size:27
Alignment explanation
Indices: 46688074--46688306 Score: 134
Period size: 27 Copynumber: 8.6 Consensus size: 27
46688064 AACCAAGGGC
* * *
46688074 ATTTCGGTAATTTTGCAAACCAATAGT
1 ATTTCTGTAATTTTGCAAATCAAGAGT
* *
46688101 ATTTCTGTAATTTTTG-AAGGTCAAGGGT
1 ATTTCTGTAA-TTTTGCAA-ATCAAGAGT
* *
46688129 ATTTCTATAATTTTGTAAATCAAGAGT
1 ATTTCTGTAATTTTGCAAATCAAGAGT
* * *
46688156 ATTTCTGTAATTTTCCAAATTAAGTGT
1 ATTTCTGTAATTTTGCAAATCAAGAGT
* * * * *
46688183 ATTTCGGTAATTTTCCAAATTAGGGGT
1 ATTTCTGTAATTTTGCAAATCAAGAGT
* * ** *
46688210 ATTT-TAATAATTTTACAAATTGAGGGT
1 ATTTCT-GTAATTTTGCAAATCAAGAGT
** ** *
46688237 ATTTAGGTAATTTCACAAATCAAGGGT
1 ATTTCTGTAATTTTGCAAATCAAGAGT
* *
46688264 ATTT-TGGTAATTTTACAAA-CTAGAGGT
1 ATTTCT-GTAATTTTGCAAATCAAGA-GT
46688291 ATTT-TGGTAATTTTGC
1 ATTTCT-GTAATTTTGC
46688307 TAATTGAGGG
Statistics
Matches: 168, Mismatches: 31, Indels: 14
0.79 0.15 0.07
Matches are distributed among these distances:
26 3 0.02
27 144 0.86
28 21 0.12
ACGTcount: A:0.31, C:0.09, G:0.17, T:0.42
Consensus pattern (27 bp):
ATTTCTGTAATTTTGCAAATCAAGAGT
Found at i:46688133 original size:55 final size:54
Alignment explanation
Indices: 46688062--46688306 Score: 172
Period size: 54 Copynumber: 4.5 Consensus size: 54
46688052 GCTAAATCTA
* * * *
46688062 CAAACCAAGGGCATTTCGGTAATTTTGCAAACCAATAGTATTTCTGTAATTTTT
1 CAAATCAAGGGTATTTCGGTAATTTTGCAAACCAAGAGTATTTCTGTAATTTTC
* * ** * *
46688116 GAAGGTCAAGGGTATTTCTATAATTTTGTAAATCAAGAGTATTTCTGTAATTTTC
1 CAA-ATCAAGGGTATTTCGGTAATTTTGCAAACCAAGAGTATTTCTGTAATTTTC
* * * ** * * * *
46688171 CAAATTAAGTGTATTTCGGTAATTTTCCAAATTAGGGGTATTT-TAATAATTTTA
1 CAAATCAAGGGTATTTCGGTAATTTTGCAAACCAAGAGTATTTCT-GTAATTTTC
** * ** * * *
46688225 CAAATTGAGGGTATTTAGGTAATTTCACAAATCAAGGGTATTT-TGGTAATTTTA
1 CAAATCAAGGGTATTTCGGTAATTTTGCAAACCAAGAGTATTTCT-GTAATTTTC
* *
46688279 CAAA-CTAGAGGTATTTTGGTAATTTTGC
1 CAAATCAAG-GGTATTTCGGTAATTTTGC
46688307 TAATTGAGGG
Statistics
Matches: 151, Mismatches: 37, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
53 3 0.02
54 104 0.69
55 44 0.29
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (54 bp):
CAAATCAAGGGTATTTCGGTAATTTTGCAAACCAAGAGTATTTCTGTAATTTTC
Found at i:46688212 original size:54 final size:54
Alignment explanation
Indices: 46688145--46688304 Score: 173
Period size: 54 Copynumber: 2.9 Consensus size: 54
46688135 ATAATTTTGT
* * *
46688145 AAATCAAGAGTATTTCT-GTAATTTTCCAAATTAAGTGTATTTCGGTAATTTTC-C
1 AAATCAAGGGTATTT-TAGTAATTTTACAAATTAAG-GTATTTAGGTAATTTTCAC
* * * *
46688199 AAATTAGGGGTATTTTAATAATTTTACAAATTGAGGGTATTTAGGTAA-TTTCAC
1 AAATCAAGGGTATTTTAGTAATTTTACAAATT-AAGGTATTTAGGTAATTTTCAC
* * *
46688253 AAATCAAGGGTATTTTGGTAATTTTACAAACTAGAGGTATTTTGGTAATTTT
1 AAATCAAGGGTATTTTAGTAATTTTACAAATTA-AGGTATTTAGGTAATTTT
46688305 GCTAATTGAG
Statistics
Matches: 87, Mismatches: 14, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
53 6 0.07
54 76 0.87
55 5 0.06
ACGTcount: A:0.33, C:0.08, G:0.17, T:0.42
Consensus pattern (54 bp):
AAATCAAGGGTATTTTAGTAATTTTACAAATTAAGGTATTTAGGTAATTTTCAC
Found at i:46688247 original size:81 final size:81
Alignment explanation
Indices: 46688162--46688330 Score: 216
Period size: 81 Copynumber: 2.1 Consensus size: 81
46688152 GAGTATTTCT
* * * * *
46688162 GTAATTTTC-CAAATTAAGTGTATTTCGGTAATTTTCCAAATTAGGGGTATTTTAATAATTTTAC
1 GTAATTTTCACAAATCAAGGGTATTTCGGTAATTTTACAAACTAGAGGTATTTTAATAATTTTAC
46688226 AAATTGAGGGTATTTAG
66 AAATTGAGGG-ATTTAG
* ** *
46688243 GTAA-TTTCACAAATCAAGGGTATTTTGGTAATTTTACAAACTAGAGGTATTTTGGTAATTTTGC
1 GTAATTTTCACAAATCAAGGGTATTTCGGTAATTTTACAAACTAGAGGTATTTTAATAATTTTAC
* *
46688307 TAATTGAGGGATTTTG
66 AAATTGAGGGATTTAG
46688323 GTAATTTT
1 GTAATTTT
46688331 GTAAACTAAG
Statistics
Matches: 75, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
80 13 0.17
81 62 0.83
ACGTcount: A:0.31, C:0.07, G:0.19, T:0.43
Consensus pattern (81 bp):
GTAATTTTCACAAATCAAGGGTATTTCGGTAATTTTACAAACTAGAGGTATTTTAATAATTTTAC
AAATTGAGGGATTTAG
Found at i:46688342 original size:26 final size:26
Alignment explanation
Indices: 46688258--46688342 Score: 91
Period size: 26 Copynumber: 3.2 Consensus size: 26
46688248 TTCACAAATC
**
46688258 AAGGGTATTTTGGTAATTTTACAAACT
1 AAGGG-ATTTTGGTAATTTTGTAAACT
* *
46688285 AGAGGTATTTTGGTAATTTTGCT-AATT
1 A-AGGGATTTTGGTAATTTTG-TAAACT
*
46688312 GAGGGATTTTGGTAATTTTGTAAACT
1 AAGGGATTTTGGTAATTTTGTAAACT
46688338 AAGGG
1 AAGGG
46688343 TATTCAGAAA
Statistics
Matches: 47, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
25 1 0.02
26 25 0.53
27 18 0.38
28 3 0.06
ACGTcount: A:0.29, C:0.05, G:0.25, T:0.41
Consensus pattern (26 bp):
AAGGGATTTTGGTAATTTTGTAAACT
Found at i:46688748 original size:22 final size:22
Alignment explanation
Indices: 46688720--46688784 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
46688710 GCAAATTCGT
*
46688720 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
*
46688742 TTGGCACAAAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
**
46688764 TTGGTGCAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
46688785 AATAATTGGA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:46689022 original size:40 final size:41
Alignment explanation
Indices: 46688929--46689047 Score: 186
Period size: 40 Copynumber: 2.9 Consensus size: 41
46688919 AAGCCACCGA
* *
46688929 TGGATCCACGGTCGTCAAGCAACCATGCGATCCTTAATCGG
1 TGGATCCACGGTCGTCAAGCAACCATACGATCCTCAATCGG
46688970 TGGATCCACGGTCGTCAAGCAACCATACGATCCTCAA-CGG
1 TGGATCCACGGTCGTCAAGCAACCATACGATCCTCAATCGG
* * *
46689010 TGGAGCCACGGTCGTCAAGCAACCGTTCGATCCTCAAT
1 TGGATCCACGGTCGTCAAGCAACCATACGATCCTCAAT
46689048 TTCTTCCTCC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
40 37 0.51
41 35 0.49
ACGTcount: A:0.25, C:0.31, G:0.24, T:0.20
Consensus pattern (41 bp):
TGGATCCACGGTCGTCAAGCAACCATACGATCCTCAATCGG
Found at i:46689420 original size:27 final size:27
Alignment explanation
Indices: 46689319--46689511 Score: 115
Period size: 27 Copynumber: 7.1 Consensus size: 27
46689309 AACCAAGGGC
* * * * *
46689319 ATTTCGGTAATTTTGCATACCAATAGT
1 ATTTCTGTAATTTTCCAAATCAAGAGT
** *
46689346 ATTTCTGTAATTTTTGAAAGTCAAGGGT
1 ATTTCTGTAATTTTCCAAA-TCAAGAGT
* **
46689374 ATTTCTATAATTTTGTAAATCAAGAGT
1 ATTTCTGTAATTTTCCAAATCAAGAGT
* * *
46689401 ACTTCTGTAATTTTCCAAATTAAGTGT
1 ATTTCTGTAATTTTCCAAATCAAGAGT
* *
46689428 ATTT-TGGTAATTTTCCAAAT-TAGGGT
1 ATTTCT-GTAATTTTCCAAATCAAGAGT
* ** *
46689454 ATTT-TAGTAATTTTACAAATTGAGGGT
1 ATTTCT-GTAATTTTCCAAATCAAGAGT
** *
46689481 ATTTAGGTAA-TTTCACAAATCAAGGGT
1 ATTTCTGTAATTTTC-CAAATCAAGAGT
46689508 ATTT
1 ATTT
46689512 TGGTAATCTT
Statistics
Matches: 134, Mismatches: 27, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 26 0.19
27 87 0.65
28 21 0.16
ACGTcount: A:0.32, C:0.09, G:0.16, T:0.43
Consensus pattern (27 bp):
ATTTCTGTAATTTTCCAAATCAAGAGT
Found at i:46689603 original size:27 final size:26
Alignment explanation
Indices: 46689407--46689602 Score: 212
Period size: 27 Copynumber: 7.3 Consensus size: 26
46689397 GAGTACTTCT
* *
46689407 GTAATTTTCCAAATTAAGTGTATTTTG
1 GTAATTTTACAAATT-AGGGTATTTTG
* *
46689434 GTAATTTTCCAAATTAGGGTATTTTA
1 GTAATTTTACAAATTAGGGTATTTTG
*
46689460 GTAATTTTACAAATTGAGGGTATTTAG
1 GTAATTTTACAAATT-AGGGTATTTTG
* *
46689487 GTAATTTCACAAATCAAGGGTATTTTG
1 GTAATTTTACAAAT-TAGGGTATTTTG
* **
46689514 GTAATCTTACAAACCAGGGGTATTTTG
1 GTAATTTTACAAATTA-GGGTATTTTG
* *
46689541 GTAATTTTACAAACTAGAGGTATTTGG
1 GTAATTTTACAAATTAG-GGTATTTTG
* *
46689568 GTAATTTTGCTAATTGAGGGTATTTTG
1 GTAATTTTACAAATT-AGGGTATTTTG
46689595 GTAATTTT
1 GTAATTTT
46689603 GTAAACTAAG
Statistics
Matches: 145, Mismatches: 19, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
26 25 0.17
27 118 0.81
28 2 0.01
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.42
Consensus pattern (26 bp):
GTAATTTTACAAATTAGGGTATTTTG
Found at i:46689616 original size:81 final size:81
Alignment explanation
Indices: 46689407--46689618 Score: 248
Period size: 81 Copynumber: 2.6 Consensus size: 81
46689397 GAGTACTTCT
* * * *
46689407 GTAATTTTCCAAATTAAGTGTATTTTGGTAATTTTCCAAA-TTAGGGTATTTTAGTAATTTTACA
1 GTAATTTTACAAATTAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTACA
*
46689471 AATTGAGGGTATTTAG
66 AATAGAGGGTATTTAG
* * * * * *
46689487 GTAATTTCACAAATCAAGGGTATTTTGGTAATCTTACAAACCAGGGGTATTTTGGTAATTTTACA
1 GTAATTTTACAAATTAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTACA
*
46689552 AACTAGA-GGTATTTGG
66 AA-TAGAGGGTATTTAG
* * * **
46689568 GTAATTTTGCTAATTGAGGGTATTTTGGTAATTTTGTAAACTAAGGGTATT
1 GTAATTTTACAAATTAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATT
46689619 CAGAAATTTT
Statistics
Matches: 108, Mismatches: 22, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
80 34 0.31
81 71 0.66
82 3 0.03
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.42
Consensus pattern (81 bp):
GTAATTTTACAAATTAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTACA
AATAGAGGGTATTTAG
Found at i:46690021 original size:22 final size:22
Alignment explanation
Indices: 46689993--46690057 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
46689983 GCAAATTCGT
*
46689993 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
*
46690015 TTGGCACAAAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
**
46690037 TTGGTGCAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
46690058 AATAATTGGA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:46690301 original size:40 final size:41
Alignment explanation
Indices: 46690202--46690320 Score: 168
Period size: 40 Copynumber: 2.9 Consensus size: 41
46690192 AAGCCAACGA
** *
46690202 TGGATCCACGGTCGTCAAGCAACCATGTGATCCTTAATCGG
1 TGGATCCACGGTCGTCAAGCAACCATACGATCCTCAATCGG
*
46690243 TGGATCCGCGGTCGTCAAGCAACCATACGATCCTCAAT-GG
1 TGGATCCACGGTCGTCAAGCAACCATACGATCCTCAATCGG
* * *
46690283 TGGAGCCACGGTCATCAAGCAACCATTCGATCCTCAAT
1 TGGATCCACGGTCGTCAAGCAACCATACGATCCTCAAT
46690321 TTCTTCCTCC
Statistics
Matches: 70, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
40 36 0.51
41 34 0.49
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (41 bp):
TGGATCCACGGTCGTCAAGCAACCATACGATCCTCAATCGG
Found at i:46690721 original size:27 final size:27
Alignment explanation
Indices: 46690617--46690902 Score: 189
Period size: 27 Copynumber: 10.6 Consensus size: 27
46690607 CAAACCAATA
* **
46690617 GTATTTCTGTAATTTTTGAAATTCAAGG
1 GTATTTCGGTAATTTTACAAATT-AAGG
** ** * *
46690645 GTATTTCTATAATTTTGTAAATCAAGA
1 GTATTTCGGTAATTTTACAAATTAAGG
* * * *
46690672 GTATTTCTGTAATTTTTCGAATTAAGT
1 GTATTTCGGTAATTTTACAAATTAAGG
* *
46690699 GTATTTCGGTAATTTTCCAAATTAGGG
1 GTATTTCGGTAATTTTACAAATTAAGG
** *
46690726 GTATTTTAGTAATTTTACAAATTGAGG
1 GTATTTCGGTAATTTTACAAATTAAGG
* * * *
46690753 GTATTTAGGTAATTTCACAAATCAAGA
1 GTATTTCGGTAATTTTACAAATTAAGG
* * ** *
46690780 GTATTTTGGAAATTTTACAAACCAGGG
1 GTATTTCGGTAATTTTACAAATTAAGG
* *
46690807 GTATTTTGGTAATTTTACAAACT-AGAG
1 GTATTTCGGTAATTTTACAAATTAAG-G
* * * *
46690834 GTATTTGGGTAATTTTGCTAATTGAGG
1 GTATTTCGGTAATTTTACAAATTAAGG
* ** **
46690861 GTATTTTGGTAATTTTGTAAACCAAGG
1 GTATTTCGGTAATTTTACAAATTAAGG
*
46690888 GTA-TTCAGTAATTTT
1 GTATTTCGGTAATTTT
46690903 GTAAACCAGC
Statistics
Matches: 208, Mismatches: 48, Indels: 6
0.79 0.18 0.02
Matches are distributed among these distances:
26 11 0.05
27 176 0.85
28 21 0.10
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.43
Consensus pattern (27 bp):
GTATTTCGGTAATTTTACAAATTAAGG
Found at i:46690765 original size:81 final size:80
Alignment explanation
Indices: 46690616--46690876 Score: 218
Period size: 81 Copynumber: 3.2 Consensus size: 80
46690606 GCAAACCAAT
* ** * ** * * **
46690616 AGTATTTCTGTAATTTTTGAAATTCAAGGGTATTTCTA-TAATTTTGTAAATCAAGAGTATTTCT
1 AGTATTTCGGTAATTTTACAAATT-AGGGGTATTT-TAGTAATTTTACAAAT-TAGGGTATTTAG
* *
46690680 GTAATTTTTCGAATTAAG
63 GTAATTTTACAAATTAAG
* *
46690698 TGTATTTCGGTAATTTTCCAAATTAGGGGTATTTTAGTAATTTTACAAATTGAGGGTATTTAGGT
1 AGTATTTCGGTAATTTTACAAATTAGGGGTATTTTAGTAATTTTACAAATT-AGGGTATTTAGGT
* *
46690763 AATTTCACAAATCAAG
65 AATTTTACAAATTAAG
* * ** * * *
46690779 AGTATTTTGGAAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACTAGAGGTATTTGGGT
1 AGTATTTCGGTAATTTTACAAATTAGGGGTATTTTAGTAATTTTACAAATTAG-GGTATTTAGGT
* * *
46690844 AATTTTGCTAATTGAG
65 AATTTTACAAATTAAG
* *
46690860 GGTATTTTGGTAATTTT
1 AGTATTTCGGTAATTTT
46690877 GTAAACCAAG
Statistics
Matches: 145, Mismatches: 31, Indels: 7
0.79 0.17 0.04
Matches are distributed among these distances:
80 4 0.03
81 121 0.83
82 20 0.14
ACGTcount: A:0.31, C:0.07, G:0.19, T:0.43
Consensus pattern (80 bp):
AGTATTTCGGTAATTTTACAAATTAGGGGTATTTTAGTAATTTTACAAATTAGGGTATTTAGGTA
ATTTTACAAATTAAG
Found at i:46690883 original size:81 final size:81
Alignment explanation
Indices: 46690680--46690902 Score: 234
Period size: 81 Copynumber: 2.8 Consensus size: 81
46690670 GAGTATTTCT
* * * * * **
46690680 GTAATTTTTCGAATTAAGTGTATTTCGGTAATTTTCCAAATTAGGGGTATTTTAGTAATTTTACA
1 GTAATTTTACAAATTAAGAGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACA
*
46690745 AATTGAGGGTATTTAG
66 AATAGAGGGTATTTAG
* * * *
46690761 GTAATTTCACAAATCAAGAGTATTTTGGAAATTTTACAAACCAGGGGTATTTTGGTAATTTTACA
1 GTAATTTTACAAATTAAGAGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACA
*
46690826 AACTAGA-GGTATTTGG
66 AA-TAGAGGGTATTTAG
* * * * ** * *
46690842 GTAATTTTGCTAATTGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTA-TTCAGTAATTTT
1 GTAATTTTACAAATTAAGAGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTT
46690903 GTAAACCAGC
Statistics
Matches: 116, Mismatches: 25, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
80 10 0.09
81 103 0.89
82 3 0.03
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (81 bp):
GTAATTTTACAAATTAAGAGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACA
AATAGAGGGTATTTAG
Found at i:46691296 original size:22 final size:22
Alignment explanation
Indices: 46691268--46691332 Score: 87
Period size: 22 Copynumber: 3.0 Consensus size: 22
46691258 GCAAATACGT
*
46691268 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
*
46691290 TTGGCACAAAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
46691312 TTGGCGCAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
46691333 AATAATTGGA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.05
22 33 0.89
23 2 0.05
ACGTcount: A:0.32, C:0.23, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:46691533 original size:41 final size:41
Alignment explanation
Indices: 46691476--46691596 Score: 188
Period size: 41 Copynumber: 3.0 Consensus size: 41
46691466 AAAGCCACCA
* * *
46691476 GTGGATCCACGGTCGTCAAGCATCCATGCGATCCTTAATCG
1 GTGGATCCACGGTCGTCAAGCAACCATACGATCCTCAATCG
46691517 GTGGATCCACGGTCGTCAAGCAACCATACGATCCTCAATCG
1 GTGGATCCACGGTCGTCAAGCAACCATACGATCCTCAATCG
* * *
46691558 GTGGATCCACAGTCGTCAAGGAACCATTCGATCCTCAAT
1 GTGGATCCACGGTCGTCAAGCAACCATACGATCCTCAAT
46691597 TTCTTCCTCC
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
41 74 1.00
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.22
Consensus pattern (41 bp):
GTGGATCCACGGTCGTCAAGCAACCATACGATCCTCAATCG
Found at i:46691876 original size:27 final size:27
Alignment explanation
Indices: 46691846--46691904 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 27
46691836 AAGGTGTTTT
46691846 GGTAAATCTACAAACCAAGGGCATTTC
1 GGTAAATCTACAAACCAAGGGCATTTC
* * * * *
46691873 GGTAATTTTGCAAACCAATGGTATTTC
1 GGTAAATCTACAAACCAAGGGCATTTC
*
46691900 TGTAA
1 GGTAA
46691905 TTTTTGAAAG
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.31
Consensus pattern (27 bp):
GGTAAATCTACAAACCAAGGGCATTTC
Found at i:46691952 original size:55 final size:54
Alignment explanation
Indices: 46691868--46691995 Score: 143
Period size: 55 Copynumber: 2.4 Consensus size: 54
46691858 AACCAAGGGC
* * **
46691868 ATTTCGGTAATTTTGCAAACCAATGGTATTTCTGTAATTTTTGAAAGTCAAGAG-T
1 ATTTCGATAATTTTGCAAACCAATGGTATTTCTGGAATTTTCCAAA-TCAAG-GTT
* * *
46691923 ATTTCTATAATTTTGTAAATCAA-GAGTATTTCTGGAATTTTCCAAATCAAGGTT
1 ATTTCGATAATTTTGCAAACCAATG-GTATTTCTGGAATTTTCCAAATCAAGGTT
*
46691977 ATTTCGATAATTTTCCAAA
1 ATTTCGATAATTTTGCAAA
46691996 TTAGGGGTAT
Statistics
Matches: 61, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
53 1 0.02
54 23 0.38
55 37 0.61
ACGTcount: A:0.33, C:0.12, G:0.14, T:0.41
Consensus pattern (54 bp):
ATTTCGATAATTTTGCAAACCAATGGTATTTCTGGAATTTTCCAAATCAAGGTT
Found at i:46692111 original size:27 final size:27
Alignment explanation
Indices: 46691861--46692142 Score: 128
Period size: 27 Copynumber: 10.4 Consensus size: 27
46691851 ATCTACAAAC
* * * *
46691861 CAAGGGCATTTCGGTAATTTTGCAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAT
*
46691888 CAATGGTATTTCT-GTAATTTT-TGAAAGT
1 CAAGGGTATTT-TGGTAATTTTGT-AAA-T
* *
46691916 CAAGAGTATTTCT-ATAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTGTAAAT
* **
46691943 CAAGAGTATTTCTGG-AATTTTCCAAAT
1 CAAGGGTATTT-TGGTAATTTTGTAAAT
* * * **
46691970 CAAGGTTATTTCGATAATTTTCCAAAT
1 CAAGGGTATTTTGGTAATTTTGTAAAT
* * *
46691997 TAGGGGTATTTTAGTAATTTTAG-AAAT
1 CAAGGGTATTTTGGTAATTTT-GTAAAT
** * ***
46692024 TGAGGGTATTTAGGTAATTTCACAAA-
1 CAAGGGTATTTTGGTAATTTTGTAAAT
* * * *
46692050 CTAGGGGTATTTTGGTATTTTTTTCTAAT
1 C-AAGGGTATTTTGGTAATTTTGT-AAAT
** *
46692079 TGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAT
** *
46692106 CAAGGGTA-TTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAT
*
46692132 CAATGGTATTT
1 CAAGGGTATTT
46692143 CAGTAATTCT
Statistics
Matches: 194, Mismatches: 49, Indels: 24
0.73 0.18 0.09
Matches are distributed among these distances:
26 24 0.12
27 128 0.66
28 41 0.21
29 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTGTAAAT
Found at i:46692121 original size:26 final size:27
Alignment explanation
Indices: 46692081--46692150 Score: 106
Period size: 26 Copynumber: 2.6 Consensus size: 27
46692071 TTTCTAATTG
**
46692081 AGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTCAGTAATTTTGTAAACCA
46692108 AGGGTA-TTCAGTAATTTTGTAAACCA
1 AGGGTATTTCAGTAATTTTGTAAACCA
*
46692134 ATGGTATTTCAGTAATT
1 AGGGTATTTCAGTAATT
46692151 CTACCTTACA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
26 23 0.59
27 16 0.41
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTGTAAACCA
Found at i:46692125 original size:55 final size:55
Alignment explanation
Indices: 46692021--46692125 Score: 122
Period size: 55 Copynumber: 1.9 Consensus size: 55
46692011 TAATTTTAGA
* * **
46692021 AATTGAGGGTATTTAGGTAATTTCACAAACTAGGGGTATTTTGGTATTTTTTTCT
1 AATTGAGGGTATTTAGGTAATTTCACAAACCAAGGGTATTTCAGTATTTTTTTCT
* *** *
46692076 AATTGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTA-TTCAGTAATTTT
1 AATTGAGGGTATTTAGGTAATTTCACAAACCAAGGGTATTTCAGTATTTTT
46692126 GTAAACCAAT
Statistics
Matches: 41, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
54 9 0.22
55 32 0.78
ACGTcount: A:0.28, C:0.07, G:0.22, T:0.44
Consensus pattern (55 bp):
AATTGAGGGTATTTAGGTAATTTCACAAACCAAGGGTATTTCAGTATTTTTTTCT
Found at i:46692169 original size:27 final size:27
Alignment explanation
Indices: 46692139--46692230 Score: 116
Period size: 27 Copynumber: 3.4 Consensus size: 27
46692129 AACCAATGGT
46692139 ATTTCAGTAATTCTACCTTACAGGGGA
1 ATTTCAGTAATTCTACCTTACAGGGGA
* *
46692166 ATTTCAGTAATTCTATCC-TATAGGGGC
1 ATTTCAGTAATTCTA-CCTTACAGGGGA
* *
46692193 ATTTCAGTAATTCTA-CTCTACAAGGGT
1 ATTTCAGTAATTCTACCT-TACAGGGGA
46692220 ATTTCAGTAAT
1 ATTTCAGTAAT
46692231 CTAGCCTATA
Statistics
Matches: 57, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
25 1 0.02
27 54 0.95
28 2 0.04
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.37
Consensus pattern (27 bp):
ATTTCAGTAATTCTACCTTACAGGGGA
Found at i:46692197 original size:54 final size:53
Alignment explanation
Indices: 46692139--46692241 Score: 154
Period size: 54 Copynumber: 1.9 Consensus size: 53
46692129 AACCAATGGT
* *
46692139 ATTTCAGTAATTCTAC-CTTACAGGGGAATTTCAGTAATTCTATCCTATAGGGGC
1 ATTTCAGTAATTCTACTC-TACAAGGGAATTTCAGTAA-TCTAGCCTATAGGGGC
*
46692193 ATTTCAGTAATTCTACTCTACAAGGGTATTTCAGTAATCTAGCCTATAG
1 ATTTCAGTAATTCTACTCTACAAGGGAATTTCAGTAATCTAGCCTATAG
46692242 ATATGAGATT
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
53 11 0.24
54 33 0.73
55 1 0.02
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.36
Consensus pattern (53 bp):
ATTTCAGTAATTCTACTCTACAAGGGAATTTCAGTAATCTAGCCTATAGGGGC
Found at i:46693353 original size:24 final size:24
Alignment explanation
Indices: 46693323--46693418 Score: 122
Period size: 24 Copynumber: 3.9 Consensus size: 24
46693313 GAGGTTCTTG
*
46693323 TTCAGCTCAATAGAGCTCACCGTT
1 TTCAGCTCAATAGAGCTTACCGTT
*
46693347 TTCAGCTCAATAGAGCTTATCGTT
1 TTCAGCTCAATAGAGCTTACCGTT
* *
46693371 TTCAACTCAATAGAGCTTACTGTT
1 TTCAGCTCAATAGAGCTTACCGTT
46693395 TATCAGCTC-ATGAAGAGCTTACCG
1 T-TCAGCTCAAT--AGAGCTTACCG
46693419 ACCATGTCTC
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
24 46 0.74
25 6 0.10
26 10 0.16
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (24 bp):
TTCAGCTCAATAGAGCTTACCGTT
Found at i:46700880 original size:22 final size:22
Alignment explanation
Indices: 46700827--46700908 Score: 74
Period size: 24 Copynumber: 3.6 Consensus size: 22
46700817 ATAGCTCGTA
* * *
46700827 AGAGCTTACTATTTTAGCTCATT
1 AGAGCTTACT-GTTCAGCTCAAT
* * *
46700850 GGAGGTTACTGTTCATCTCAAT
1 AGAGCTTACTGTTCAGCTCAAT
*
46700872 AGAGCTTACCGTTTTCAGCTCAAT
1 AGAGCTTA-C-TGTTCAGCTCAAT
46700896 AGAGCTTACTGTT
1 AGAGCTTACTGTT
46700909 TATCAACTCA
Statistics
Matches: 46, Mismatches: 11, Indels: 5
0.74 0.18 0.08
Matches are distributed among these distances:
22 17 0.37
23 10 0.22
24 19 0.41
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.38
Consensus pattern (22 bp):
AGAGCTTACTGTTCAGCTCAAT
Found at i:46700928 original size:26 final size:24
Alignment explanation
Indices: 46700861--46700931 Score: 81
Period size: 24 Copynumber: 2.9 Consensus size: 24
46700851 GAGGTTACTG
*
46700861 TTCATCTCAATAGAGCTTACCGTT
1 TTCAACTCAATAGAGCTTACCGTT
* *
46700885 TTCAGCTCAATAGAGCTTACTGTT
1 TTCAACTCAATAGAGCTTACCGTT
46700909 TATCAACTC-ATGAAGAGCTTACC
1 T-TCAACTCAAT--AGAGCTTACC
46700932 AACCATGTCT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
24 25 0.62
25 6 0.15
26 9 0.22
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.34
Consensus pattern (24 bp):
TTCAACTCAATAGAGCTTACCGTT
Found at i:46708948 original size:43 final size:44
Alignment explanation
Indices: 46708836--46708948 Score: 117
Period size: 43 Copynumber: 2.6 Consensus size: 44
46708826 AATGCCAACG
** * *
46708836 TCCCAGACGTGGTCTTACATGT-AATTAAATATCGATGCCACTA
1 TCCCAGATATGGTCTTACACGTAAATCAAATATCGATGCCACTA
* * *
46708879 TCCCAGATAGGGTCTTACACG-AAATCAAATA-CGATGTCGA-TG
1 TCCCAGATATGGTCTTACACGTAAATCAAATATCGATG-CCACTA
*
46708921 TCCCATATATGGTCTTACACGTAAATCA
1 TCCCAGATATGGTCTTACACGTAAATCA
46708949 TAAGTCCATG
Statistics
Matches: 58, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
42 25 0.43
43 33 0.57
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (44 bp):
TCCCAGATATGGTCTTACACGTAAATCAAATATCGATGCCACTA
Found at i:46712828 original size:26 final size:25
Alignment explanation
Indices: 46712797--46712897 Score: 93
Period size: 24 Copynumber: 4.1 Consensus size: 25
46712787 CGAGACATGG
46712797 TAGTAAGCTCTTCA-TGAGCTGATAAA
1 TAGTAAGCTCTT-ATTGAGCTGA-AAA
46712823 TAGTAAGCTC-TATTGAGCTGAAAA
1 TAGTAAGCTCTTATTGAGCTGAAAA
** *
46712847 CGGTAAGCTC-TATTGAGTTGAAAA
1 TAGTAAGCTCTTATTGAGCTGAAAA
* * *
46712871 TGGTACGCTC-TATTGAGTTGAACAA
1 TAGTAAGCTCTTATTGAGCTGAA-AA
46712896 TA
1 TA
46712898 AGCTCCAATG
Statistics
Matches: 67, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
24 45 0.67
25 12 0.18
26 10 0.15
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.31
Consensus pattern (25 bp):
TAGTAAGCTCTTATTGAGCTGAAAA
Found at i:46712857 original size:24 final size:24
Alignment explanation
Indices: 46712811--46712892 Score: 110
Period size: 24 Copynumber: 3.4 Consensus size: 24
46712801 AAGCTCTTCA
*
46712811 TGAGCTGATAAATAGTAAGCTCTAT
1 TGAGCTGA-AAATGGTAAGCTCTAT
*
46712836 TGAGCTGAAAACGGTAAGCTCTAT
1 TGAGCTGAAAATGGTAAGCTCTAT
* *
46712860 TGAGTTGAAAATGGTACGCTCTAT
1 TGAGCTGAAAATGGTAAGCTCTAT
*
46712884 TGAGTTGAA
1 TGAGCTGAA
46712893 CAATAAGCTC
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
24 44 0.85
25 8 0.15
ACGTcount: A:0.33, C:0.12, G:0.24, T:0.30
Consensus pattern (24 bp):
TGAGCTGAAAATGGTAAGCTCTAT
Found at i:46715150 original size:43 final size:43
Alignment explanation
Indices: 46715101--46715233 Score: 203
Period size: 43 Copynumber: 3.1 Consensus size: 43
46715091 ACATATCGTA
* *
46715101 CAATGCCAACGTCCCAGACGTGGTCTTACACATTATTACATAT
1 CAATGCCAACGTCCCAGACATGGTCTTACACATAATTACATAT
* *
46715144 CAATGCCAAGGTCCCAGACTTGGTCTTACACATAATTACATAT
1 CAATGCCAACGTCCCAGACATGGTCTTACACATAATTACATAT
** *
46715187 TGATGCCAATGTCCCAGACATGGTCTTACACATAATTACATAT
1 CAATGCCAACGTCCCAGACATGGTCTTACACATAATTACATAT
46715230 CAAT
1 CAAT
46715234 ATCACATATA
Statistics
Matches: 81, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 81 1.00
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.29
Consensus pattern (43 bp):
CAATGCCAACGTCCCAGACATGGTCTTACACATAATTACATAT
Found at i:46718463 original size:43 final size:43
Alignment explanation
Indices: 46718416--46718637 Score: 336
Period size: 43 Copynumber: 5.2 Consensus size: 43
46718406 GCATGAAACT
* * * *
46718416 CGGTGATGTGTATTCGAGCCTTCGTGCCTAGCGGGCTTTGTGT
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
46718459 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
* * *
46718502 CAGTGATGTGTATTCGGGCCTTCGTACCTAGCAGGCTTCATGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
*
46718545 CGGTGATGTGTATTCAGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
* * **
46718588 CAGTGATGTGTATTCGGGTCTTCGTGCCTAGCAGGCTTAATGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
46718631 CGGTGAT
1 CGGTGAT
46718638 TCTAGCAAGG
Statistics
Matches: 162, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 162 1.00
ACGTcount: A:0.13, C:0.23, G:0.32, T:0.32
Consensus pattern (43 bp):
CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
Found at i:46718891 original size:28 final size:28
Alignment explanation
Indices: 46718816--46718891 Score: 73
Period size: 28 Copynumber: 2.7 Consensus size: 28
46718806 CAAATTCCTT
* *
46718816 TAACCGAGCACTATGTGTACGAGATTAG
1 TAACTGAGCACTATGTGTGCGAGATTAG
* * **
46718844 TAATTGAGGCACTGTGTGTGCGAG-TTCT
1 TAACTGA-GCACTATGTGTGCGAGATTAG
46718872 TCAACTGAGCACTATGTGTG
1 T-AACTGAGCACTATGTGTG
46718892 TGTGATCGGT
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
28 19 0.50
29 19 0.50
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (28 bp):
TAACTGAGCACTATGTGTGCGAGATTAG
Found at i:46720449 original size:12 final size:13
Alignment explanation
Indices: 46720415--46720454 Score: 55
Period size: 13 Copynumber: 3.0 Consensus size: 13
46720405 TTTTTTTAAG
46720415 TAGTTTATTGATA
1 TAGTTTATTGATA
46720428 TAGTCATTATT-ATA
1 TAGT--TTATTGATA
46720442 TAGTTTATTGATA
1 TAGTTTATTGATA
46720455 AAAATAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
12 5 0.21
13 7 0.29
14 7 0.29
15 5 0.21
ACGTcount: A:0.33, C:0.03, G:0.12, T:0.53
Consensus pattern (13 bp):
TAGTTTATTGATA
Found at i:46732514 original size:37 final size:37
Alignment explanation
Indices: 46732465--46732539 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
46732455 ATTCAAGGAG
46732465 TTCATTCATCATTCAGGAAGTTTCACCTCTCTCCCTA
1 TTCATTCATCATTCAGGAAGTTTCACCTCTCTCCCTA
46732502 TTCATTCATCATTCAGGAAGTTTCACCTCTCTCCCTA
1 TTCATTCATCATTCAGGAAGTTTCACCTCTCTCCCTA
46732539 T
1 T
46732540 CTTATGATTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.21, C:0.32, G:0.08, T:0.39
Consensus pattern (37 bp):
TTCATTCATCATTCAGGAAGTTTCACCTCTCTCCCTA
Found at i:46740201 original size:40 final size:40
Alignment explanation
Indices: 46740106--46740249 Score: 218
Period size: 40 Copynumber: 3.6 Consensus size: 40
46740096 CGGATGATAA
* * *
46740106 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
46740146 -CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
* **
46740185 CCGGGCTAGGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
*
46740225 CCGGGCTAAGTCTCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
46740250 AGTGAGTAGC
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
39 36 0.38
40 59 0.62
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
Found at i:46740278 original size:79 final size:79
Alignment explanation
Indices: 46740106--46740282 Score: 214
Period size: 79 Copynumber: 2.2 Consensus size: 79
46740096 CGGATGATAA
* * ** *
46740106 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCGGGCTAAGTCCCGAAGGCATTTGT
1 CCGGACTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCGGGCTAAGTCCCGAAGGCATTTGA
*
46740171 GCGAGTTACTATTT
66 GCGAGTTACTATAT
* * * *
46740185 CCGGGCTAGGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCTCGAAGGCATTTG
1 CCGGACTAAGTCCCGAAGGCATTTGTGCGAGTGACTA-AACCGGGCTAAGTCCCGAAGGCATTTG
*
46740250 AGTGAG-TAGCTATAT
65 AGCGAGTTA-CTATAT
*
46740265 CC-GACTAAATCCCGAAGG
1 CCGGACTAAGTCCCGAAGG
46740283 TACTTGGTTT
Statistics
Matches: 84, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
79 49 0.58
80 35 0.42
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGGACTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCGGGCTAAGTCCCGAAGGCATTTGA
GCGAGTTACTATAT
Found at i:46742191 original size:40 final size:40
Alignment explanation
Indices: 46742055--46742243 Score: 210
Period size: 41 Copynumber: 4.8 Consensus size: 40
46742045 TGGATGATAA
* ** **
46742055 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACAAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTATTACAT
*
46742096 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACA-T
*
46742137 CCGGGCTATGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
* *
46742177 CCGGGCTAAGTCCCGAAGGCATTTGTGTGA-CTA-T--AT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
* *
46742213 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
46742244 AGCTATATCC
Statistics
Matches: 130, Mismatches: 15, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
35 6 0.05
36 22 0.17
38 1 0.01
39 2 0.02
40 34 0.26
41 61 0.47
42 4 0.03
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
Found at i:46742200 original size:81 final size:75
Alignment explanation
Indices: 46742097--46742243 Score: 213
Period size: 81 Copynumber: 1.9 Consensus size: 75
46742087 TGACAAGTTT
*
46742097 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATTCCGGGCTATGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGA-CTA-T--A-TCCGGGCTATGTCCCGAAGGCA-TTG
*
46742162 TGCGAGTTATTACATC
60 AGCGAGTTATTACATC
*
46742178 CGGGCTAAGTCCCGAAGGCATTTGTGTGACTATATCCGGGCTATGTCCCGAAGGCATTGAGCGAG
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGACTATATCCGGGCTATGTCCCGAAGGCATTGAGCGAG
46742243 T
66 T
46742244 AGCTATATCC
Statistics
Matches: 63, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
75 9 0.14
76 22 0.35
77 1 0.02
79 1 0.02
80 2 0.03
81 28 0.44
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.27
Consensus pattern (75 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGACTATATCCGGGCTATGTCCCGAAGGCATTGAGCGAG
TTATTACATC
Found at i:46753970 original size:30 final size:31
Alignment explanation
Indices: 46753926--46754028 Score: 113
Period size: 30 Copynumber: 3.4 Consensus size: 31
46753916 TTGCATTCAC
*
46753926 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
* * *
46753957 ATTCT-ATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
*
46753987 ATTCTGATTCTGATTCTAGTT--CTGATAATG
1 ATTCTGATTCTGATTCT-GTTACCTGATACTG
* *
46754017 TTTCTTATTCTG
1 ATTCTGATTCTG
46754029 TAATGGGTTA
Statistics
Matches: 60, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
30 42 0.70
31 16 0.27
32 2 0.03
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTG
Found at i:46753971 original size:6 final size:6
Alignment explanation
Indices: 46753926--46754012 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
46753916 TTGCATTCAC
* *
46753926 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCT- ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
46753974 -TCACCTA ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
46754013 AATGTTTCTT
Statistics
Matches: 64, Mismatches: 8, Indels: 18
0.71 0.09 0.20
Matches are distributed among these distances:
5 9 0.14
6 47 0.73
7 6 0.09
8 2 0.03
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:46755933 original size:40 final size:41
Alignment explanation
Indices: 46755896--46756042 Score: 194
Period size: 40 Copynumber: 3.7 Consensus size: 41
46755886 TGAGGAATTG
46755896 TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATGT
1 TATCCGGGCTTAAAGACCCGCAGGCTATCATGCTGGAATGT
* *
46755936 TATCCGGGCTTAAAGACCCGTATGCTAT-ATGCTGGAATGT
1 TATCCGGGCTTAAAGACCCGCAGGCTATCATGCTGGAATGT
* * * * *
46755976 TATCTGGGCTTAAAGACCCGCAAGCT-TCGTGCTAGAATGC
1 TATCCGGGCTTAAAGACCCGCAGGCTATCATGCTGGAATGT
*
46756016 TATCCGGGC-TAGAGACCCGCAGGCTAT
1 TATCCGGGCTTAAAGACCCGCAGGCTAT
46756043 GAGCTGGTAT
Statistics
Matches: 94, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
39 15 0.16
40 79 0.84
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (41 bp):
TATCCGGGCTTAAAGACCCGCAGGCTATCATGCTGGAATGT
Found at i:46775323 original size:48 final size:48
Alignment explanation
Indices: 46775252--46775379 Score: 220
Period size: 48 Copynumber: 2.7 Consensus size: 48
46775242 TTAATGAGAT
*
46775252 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGTG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGATATGTGTG
*
46775300 CCAGTGTAAGACCATGTCTGGGACATGGCATCTGCAATGATATGTGTG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGATATGTGTG
* *
46775348 CTAGTGTAAGACCATGTGTGGGACATGGCATC
1 CCAGTGTAAGACCATGTCTGGGACATGGCATC
46775380 AGCACCGATA
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 76 1.00
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (48 bp):
CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGATATGTGTG
Found at i:46779372 original size:47 final size:47
Alignment explanation
Indices: 46779318--46779746 Score: 527
Period size: 47 Copynumber: 9.1 Consensus size: 47
46779308 TTAGGATTTT
** * * *
46779318 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
46779365 ATGTGATGAATGTGAACCTGTATATATATGCGTGATAAGACCGAATGGCCA
1 ATGTGATGAATGTGAACATG--CATATAT--GTGATAAGGCCGAATGGCCA
* * ** *
46779416 GTGTGATGAATGTAAACATGTGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
46779463 ATGTGATGAATGTGAACACGCGTATGTGTTATAAGGGCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
46779510 ATGTGATGACTGTGAACACGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
46779557 ATGTGATGAATGTGAACACGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
46779604 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
46779651 ATGTGATGAATGTGAACATGCATATATGAGATAAGG-CGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
46779697 ATATGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
46779744 ATG
1 ATG
46779747 CGAAATGTGT
Statistics
Matches: 346, Mismatches: 31, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
46 42 0.12
47 258 0.75
49 12 0.03
51 34 0.10
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:46779856 original size:46 final size:46
Alignment explanation
Indices: 46779720--46779856 Score: 193
Period size: 46 Copynumber: 3.0 Consensus size: 46
46779710 GAACATGTAT
* *
46779720 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * *
46779766 ATATGAGGTAAAGCCGAATGGCTAATGGGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
46779812 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
46779857 TGTATATATA
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.34, C:0.08, G:0.32, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:46780951 original size:47 final size:47
Alignment explanation
Indices: 46780882--46781160 Score: 432
Period size: 47 Copynumber: 5.9 Consensus size: 47
46780872 TGGCTATCTT
46780882 TGAATGTGAACACGCGTATGTGTGATAAGGCCGAATGGCCAATGTGA
1 TGAATGTGAACACGCGTATGTGTGATAAGGCCGAATGGCCAATGTGA
*
46780929 TGAATGTGAACACGCGTATGTGTGATAAGGGCGAATGGCCAATGTGA
1 TGAATGTGAACACGCGTATGTGTGATAAGGCCGAATGGCCAATGTGA
* *
46780976 TGAATGTGAACACGCGTATGTGTGATAAGGCTGAATGGCCAATGTGT
1 TGAATGTGAACACGCGTATGTGTGATAAGGCCGAATGGCCAATGTGA
*
46781023 TGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGA
1 TGAATGTGAACACGCGTATGTGTGATAAGGCCGAATGGCCAATGTGA
* * * *
46781070 TGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGA
1 TGAATGTGAACACGCGTATGTGTGATAAGGCCGAATGGCCAATGTGA
* ** * * *
46781117 TGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTAATG
1 TGAATGTGAACACGCGTATGTGTGATAAGGCCGAATGGCCAATG
46781161 CGAAATGTGT
Statistics
Matches: 218, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 218 1.00
ACGTcount: A:0.31, C:0.13, G:0.31, T:0.25
Consensus pattern (47 bp):
TGAATGTGAACACGCGTATGTGTGATAAGGCCGAATGGCCAATGTGA
Found at i:46781270 original size:46 final size:46
Alignment explanation
Indices: 46781134--46781270 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
46781124 GAACATGTAT
* *
46781134 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* *
46781180 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
46781226 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
46781271 TGTATATATA
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:46781483 original size:37 final size:37
Alignment explanation
Indices: 46781442--46781523 Score: 101
Period size: 37 Copynumber: 2.2 Consensus size: 37
46781432 GATGACCATA
* *
46781442 TGTGGTGACTACGTCCGGGTAAGACCCGATGACTACG
1 TGTGGAGACTACGTCCGGGTAAGACCCGATAACTACG
* ** * *
46781479 TGTGGAGATTTTGTTCGGGTAAGACCCGATAACTTCG
1 TGTGGAGACTACGTCCGGGTAAGACCCGATAACTACG
46781516 TGTGGAGA
1 TGTGGAGA
46781524 TTTCATCTGA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.22, C:0.18, G:0.33, T:0.27
Consensus pattern (37 bp):
TGTGGAGACTACGTCCGGGTAAGACCCGATAACTACG
Found at i:46783790 original size:79 final size:81
Alignment explanation
Indices: 46783656--46783836 Score: 228
Period size: 79 Copynumber: 2.3 Consensus size: 81
46783646 GAATGATGTT
* * *
46783656 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGGTCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTCACTAAATCCGGACTAAGGTCCGAAGGCATTTG
*
46783720 TGCGAGTTACTA-ATTC
66 TGCGAGTTACTATA-AC
* **
46783736 CGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTCACTAAATCCGGGTTAA-GTCCCGAAGGCATTT
1 CGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTCACTAAATCCGGACTAAGGT-CCGAAGGCATTT
46783798 GTGCGAGTTACTATAAC
65 GTGCGAGTTACTATAAC
* *
46783815 CGAGCTATGTCCCGAAGGCATT
1 CGGGCTAAGTCCCGAAGGCATT
46783837 TGAACGAGTA
Statistics
Matches: 88, Mismatches: 9, Indels: 8
0.84 0.09 0.08
Matches are distributed among these distances:
78 2 0.02
79 58 0.66
80 28 0.32
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
CGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTCACTAAATCCGGACTAAGGTCCGAAGGCATTTG
TGCGAGTTACTATAAC
Found at i:46783845 original size:40 final size:39
Alignment explanation
Indices: 46783656--46783838 Score: 201
Period size: 40 Copynumber: 4.6 Consensus size: 39
46783646 GAATGATGTT
* * *
46783656 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AAC
* *
46783696 CGGACTAAGGT-CCGAAGGCATTTGTGCGAGTTACTAATTC
1 CGGGCTAA-GTCCCGAAGGCATTTGTGCGAGTTACTAA-AC
* *
46783736 CGGGCTAAG-CCCGAAGGCATTGGTGCGAGTCACTAAATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA-C
*
46783775 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AAC
* *
46783815 CGAGCTATGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
46783839 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 77 0.63
41 11 0.09
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAC
Found at i:46783860 original size:79 final size:78
Alignment explanation
Indices: 46783688--46783861 Score: 201
Period size: 79 Copynumber: 2.2 Consensus size: 78
46783678 GTGCTAAGTG
* * *
46783688 ACTATATCCGGACTAAGGTCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGG
1 ACTATATCCGG-TTAAGGTCCGAAGGCATTTGTGCGAGTTACTAATACCGAGCTAAGCCCGAAGG
**
46783753 CATTGGTGCGAGTC
65 CATTGGAACGAGTC
* *
46783767 ACTAAATCCGGGTTAA-GTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGAGCTATGTCCCGA
1 ACTATATCC-GGTTAAGGT-CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGAGCTAAG-CCCGA
*
46783830 AGGCATTTGAACGAGT-
62 AGGCATTGGAACGAGTC
46783846 AGCTATATCCGGTTAA
1 A-CTATATCCGGTTAA
46783862 ATTTCGAAGG
Statistics
Matches: 81, Mismatches: 9, Indels: 10
0.81 0.09 0.10
Matches are distributed among these distances:
78 4 0.05
79 50 0.62
80 27 0.33
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (78 bp):
ACTATATCCGGTTAAGGTCCGAAGGCATTTGTGCGAGTTACTAATACCGAGCTAAGCCCGAAGGC
ATTGGAACGAGTC
Found at i:46791150 original size:30 final size:30
Alignment explanation
Indices: 46791116--46791178 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
46791106 TCACCATTCA
* *
46791116 TTTTCATAAATT-GATAGCTGAAGCTATCCC
1 TTTTCAT-AATTCGATAGCCGAAGCTACCCC
46791146 TTTTCATAATTCGATAGCCGAAGCTACCCC
1 TTTTCATAATTCGATAGCCGAAGCTACCCC
46791176 TTT
1 TTT
46791179 GAATTGTTCG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 4 0.13
30 26 0.87
ACGTcount: A:0.27, C:0.24, G:0.13, T:0.37
Consensus pattern (30 bp):
TTTTCATAATTCGATAGCCGAAGCTACCCC
Found at i:46791249 original size:30 final size:30
Alignment explanation
Indices: 46791188--46791279 Score: 96
Period size: 30 Copynumber: 3.1 Consensus size: 30
46791178 TGAATTGTTC
* * *
46791188 GATGGTCGTCACCATCCTTTTTCATTA-TT
1 GATGGTCGTCACAATCCCTTTTCATAATTT
46791217 GATGGTCGTCACAATCCCTTTTCATAATTT
1 GATGGTCGTCACAATCCCTTTTCATAATTT
* * *** *
46791247 GATAGTTGAGGCTATCCCTTTTCATAATTT
1 GATGGTCGTCACAATCCCTTTTCATAATTT
46791277 GAT
1 GAT
46791280 ACCTGAAGCT
Statistics
Matches: 53, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
29 24 0.45
30 29 0.55
ACGTcount: A:0.22, C:0.21, G:0.15, T:0.42
Consensus pattern (30 bp):
GATGGTCGTCACAATCCCTTTTCATAATTT
Found at i:46791280 original size:30 final size:30
Alignment explanation
Indices: 46791230--46791301 Score: 108
Period size: 30 Copynumber: 2.4 Consensus size: 30
46791220 GGTCGTCACA
** *
46791230 ATCCCTTTTCATAATTTGATAGTTGAGGCT
1 ATCCCTTTTCATAATTTGATACCTGAAGCT
46791260 ATCCCTTTTCATAATTTGATACCTGAAGCT
1 ATCCCTTTTCATAATTTGATACCTGAAGCT
*
46791290 ATCCATTTTCAT
1 ATCCCTTTTCAT
46791302 TAGTCGATGA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.25, C:0.21, G:0.11, T:0.43
Consensus pattern (30 bp):
ATCCCTTTTCATAATTTGATACCTGAAGCT
Found at i:46791309 original size:119 final size:120
Alignment explanation
Indices: 46791081--46791316 Score: 316
Period size: 119 Copynumber: 2.0 Consensus size: 120
46791071 AGTCGAAGCT
* *
46791081 ATCCCTTTTCATTATTTGATGGTCGTCACCATTCATTTTCATAAATTGATAGCTGAAGCTATCCC
1 ATCCCTTTTCATTATTTGATGGTCGTCACAATCCATTTTCATAAATTGATAGCTGAAGCTATCCC
* *
46791146 TTTTCATAATTCGATAGCCGAAGCTACCCCTTTGAATTGTTCGATGGTCGTCACC
66 TTTTCATAATTCGATAGCCGAAGCTACCCATTTGAATTGTTCGATGATCGTCACC
* * * * *
46791201 ATCCTTTTTCATTA-TTGATGGTCGTCACAATCCCTTTTCATAATTTGATAGTTGAGGCTATCCC
1 ATCCCTTTTCATTATTTGATGGTCGTCACAATCCATTTTCATAAATTGATAGCTGAAGCTATCCC
* * **
46791265 TTTTCATAATTTGATA-CCTGAAGCTATCCATTTTCATTAG-TCGATGATCGTC
66 TTTTCATAATTCGATAGCC-GAAGCTACCCATTTGAATT-GTTCGATGATCGTC
46791317 GATACACCGT
Statistics
Matches: 101, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
118 2 0.02
119 85 0.84
120 14 0.14
ACGTcount: A:0.23, C:0.22, G:0.14, T:0.40
Consensus pattern (120 bp):
ATCCCTTTTCATTATTTGATGGTCGTCACAATCCATTTTCATAAATTGATAGCTGAAGCTATCCC
TTTTCATAATTCGATAGCCGAAGCTACCCATTTGAATTGTTCGATGATCGTCACC
Found at i:46804437 original size:39 final size:39
Alignment explanation
Indices: 46804379--46804483 Score: 131
Period size: 39 Copynumber: 2.7 Consensus size: 39
46804369 TTCAGTGATG
* * * *
46804379 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCCGGAAA
46804418 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCCGGAAA
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCCGGAAA
* * *
46804457 TATGTCCGGGC-TAAAGTCCCGCAGGCT
1 TATATCCGGACTTAAGGT-CCGCAGGCT
46804484 TCAAGCTGGT
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
38 5 0.09
39 53 0.91
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.24
Consensus pattern (39 bp):
TATATCCGGACTTAAGGTCCGCAGGCTACGTGCCGGAAA
Found at i:46805382 original size:44 final size:43
Alignment explanation
Indices: 46805323--46805492 Score: 170
Period size: 44 Copynumber: 3.9 Consensus size: 43
46805313 ATAGGATCCG
* *
46805323 CTATGTGTTATCGTGTAAGACCACGTCTGGGACATTAGCATCAA
1 CTATGTTTTA-CGTGTAAGACCACGTCTGGGACATTGGCATCAA
*
46805367 CTTATGTTTTACGTGTAAGACCACGTCTGGGACGTTGGCATCATA
1 C-TATGTTTTACGTGTAAGACCACGTCTGGGACATTGGCATCA-A
* *
46805412 CT-TGATTT-CGTGTAAGACC-CTGTCTGGGACAGTGGCATCAA
1 CTATGTTTTACGTGTAAGACCAC-GTCTGGGACATTGGCATCAA
* * * *
46805453 -TAT-TTGATTACATGTAAGACCATGTTTGGGACGTTGGCAT
1 CTATGTT--TTACGTGTAAGACCACGTCTGGGACATTGGCAT
46805493 TGTACGAGCT
Statistics
Matches: 106, Mismatches: 12, Indels: 17
0.79 0.09 0.13
Matches are distributed among these distances:
40 2 0.02
41 3 0.03
42 30 0.28
43 29 0.27
44 32 0.30
45 10 0.09
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (43 bp):
CTATGTTTTACGTGTAAGACCACGTCTGGGACATTGGCATCAA
Found at i:46805483 original size:43 final size:43
Alignment explanation
Indices: 46805334--46805492 Score: 175
Period size: 43 Copynumber: 3.7 Consensus size: 43
46805324 TATGTGTTAT
* *
46805334 CGTGTAAGACCACGTCTGGGACATTAGCATCAACTTATGTT--TTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCAA--TAT-TTGATTA
* *
46805378 CGTGTAAGACCACGTCTGGGACGTTGGCATC-ATACTTGATTT
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCAATATTTGATTA
46805420 CGTGTAAGACC-CTGTCTGGGACAG-TGGCATCAATATTTGATTA
1 CGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCAATATTTGATTA
* * *
46805463 CATGTAAGACCATGTTTGGGACGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACGTTGGCAT
46805493 TGTACGAGCT
Statistics
Matches: 99, Mismatches: 9, Indels: 15
0.80 0.07 0.12
Matches are distributed among these distances:
40 2 0.02
41 3 0.03
42 30 0.30
43 35 0.35
44 29 0.29
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATCAATATTTGATTA
Found at i:46807473 original size:46 final size:46
Alignment explanation
Indices: 46807423--46807595 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
46807413 TGGTTGAGCA
46807423 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
46807469 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-CTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
* *
46807514 CATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * *
46807562 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
46807596 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 5 0.05
46 58 0.55
47 27 0.25
48 5 0.05
50 5 0.05
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:46807579 original size:93 final size:93
Alignment explanation
Indices: 46807420--46807590 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
46807410 GGATGGTTGA
* *
46807420 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAGT
46807485 TGAGTCTGAGTTCCTGAGATGTAACTAG
66 TGAGTCTGAGTTCCTGAGATGTAACTAG
* *
46807513 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAGT
46807578 TGAGTCTGAGTTC
66 TGAGTCTGAGTTC
46807591 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAGT
TGAGTCTGAGTTCCTGAGATGTAACTAG
Found at i:46809760 original size:37 final size:37
Alignment explanation
Indices: 46809709--46809788 Score: 115
Period size: 37 Copynumber: 2.2 Consensus size: 37
46809699 CTTATTACGA
* * *
46809709 AGTCTTACCCGGACATAATCTCCACACGAAGTTATCG
1 AGTCTTACCCGGACAAAATCCCCACACGAAGTCATCG
* *
46809746 GGTCTTACCCGGACAAAATCCCCACACGTAGTCATCG
1 AGTCTTACCCGGACAAAATCCCCACACGAAGTCATCG
46809783 AGTCTT
1 AGTCTT
46809789 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (37 bp):
AGTCTTACCCGGACAAAATCCCCACACGAAGTCATCG
Found at i:46810128 original size:49 final size:47
Alignment explanation
Indices: 46809907--46810477 Score: 926
Period size: 47 Copynumber: 11.9 Consensus size: 47
46809897 CCCTTCGGGA
* * * * * *
46809907 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
46809954 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46810001 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
46810048 CTTATCACATATATACACATTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46810095 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
46810144 CCTATCACATATATATACACTTTCACATTCATCACATCGGTCATTTGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
46810193 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46810242 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46810291 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46810338 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46810385 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
46810432 CTTATCACATATATATACACTTTCATATTCATCACATCGGCCATTA
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTA
46810478 CTTGTATCAT
Statistics
Matches: 501, Mismatches: 19, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
47 279 0.56
49 222 0.44
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:46812447 original size:40 final size:40
Alignment explanation
Indices: 46812421--46812766 Score: 514
Period size: 40 Copynumber: 8.7 Consensus size: 40
46812411 TGATTACTCT
* * * *
46812421 TCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCT
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
* * ** * * *
46812461 TCGAGG-TTTAGCACAAATATATTACTAGCATGAATGCTCT
1 TCG-GGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
* *
46812501 TCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
*
46812541 TCAGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
*
46812581 TCGGGACTTAGCCCAGATATATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
*
46812621 TCGGGACTTAGCCTGGATATATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
*
46812661 TCGAGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
46812701 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
*
46812741 TCGGGACTTAGCCCAGATATATCACT
1 TCGGGACTTAGCCCGGATATATCACT
46812767 CTCAATTCTC
Statistics
Matches: 275, Mismatches: 29, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
39 1 0.00
40 272 0.99
41 2 0.01
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
Found at i:46814030 original size:37 final size:37
Alignment explanation
Indices: 46813980--46814058 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
46813970 TTATTACGAA
* ** *
46813980 GTCTTACCCGGACATAATTTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
46814017 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
46814054 GTCTT
1 GTCTT
46814059 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:46814255 original size:47 final size:47
Alignment explanation
Indices: 46814177--46814745 Score: 922
Period size: 47 Copynumber: 11.9 Consensus size: 47
46814167 CCCTTCGGGA
* * * * * * *
46814177 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
46814224 CGTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46814271 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
46814318 CTTATCACATATATACACATTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
46814365 CTTATCACATATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
46814414 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
46814463 CTTATCACATATATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46814510 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46814559 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
46814606 CTTATCACATATATACACTTTCACATTCATCACATCGTCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
46814653 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
46814700 CTTATCACATACATATACACTTTCATATTCATCACATCGGCCATTA
1 CTTATCACAT--ATATACACTTTCACATTCATCACATCGGCCATTA
46814746 CTTGTATCAT
Statistics
Matches: 492, Mismatches: 24, Indels: 10
0.94 0.05 0.02
Matches are distributed among these distances:
47 322 0.65
49 170 0.35
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:46814409 original size:96 final size:94
Alignment explanation
Indices: 46814177--46814745 Score: 922
Period size: 96 Copynumber: 6.0 Consensus size: 94
46814167 CCCTTCGGGA
* * * * * * * * *
46814177 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGTCGTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
46814242 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
46814271 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
46814336 ATTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
46814365 CTTATCACATATATATACACTTTCACATTCATCACATCGACCATTAGGCCCTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
46814430 ACACTTTCACATTCATCACATCGGCCATTAGGC
62 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
46814463 CTTATCACATATATACGCTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
46814528 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
46814559 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
46814624 TTTCACATTCATCACATCGTCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
46814653 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATACATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT--ATATAC
*
46814718 ACTTTCATATTCATCACATCGGCCATTA
64 ACTTTCACATTCATCACATCGGCCATTA
46814746 CTTGTATCAT
Statistics
Matches: 448, Mismatches: 21, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
94 186 0.42
96 216 0.48
98 46 0.10
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:46824393 original size:51 final size:51
Alignment explanation
Indices: 46824333--46824432 Score: 173
Period size: 51 Copynumber: 2.0 Consensus size: 51
46824323 ATTAGTTGAA
* * *
46824333 AGAATAATTAATATTACATGTAGGAGTGTTATTGTAACACCCCTTACCCAT
1 AGAATAATTAATATTACATGTAAGAATATTATTGTAACACCCCTTACCCAT
46824384 AGAATAATTAATATTACATGTAAGAATATTATTGTAACACCCCTTACCC
1 AGAATAATTAATATTACATGTAAGAATATTATTGTAACACCCCTTACCC
46824433 GTATTCAACG
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 46 1.00
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.33
Consensus pattern (51 bp):
AGAATAATTAATATTACATGTAAGAATATTATTGTAACACCCCTTACCCAT
Found at i:46836419 original size:43 final size:43
Alignment explanation
Indices: 46836356--46836438 Score: 114
Period size: 43 Copynumber: 1.9 Consensus size: 43
46836346 ACATGTATCT
* * *
46836356 ATCCATTATGAACTCAGACCATTCCACGAGCTT-GGATGCTCGC
1 ATCCATAATGAACTCAGACCACTCAACGAG-TTCGGATGCTCGC
*
46836399 ATCCATAATGAACTCGGACCACTCAACGAGTTCGGATGCT
1 ATCCATAATGAACTCAGACCACTCAACGAGTTCGGATGCT
46836439 AGATATATCA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 2 0.06
43 33 0.94
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (43 bp):
ATCCATAATGAACTCAGACCACTCAACGAGTTCGGATGCTCGC
Found at i:46843163 original size:27 final size:26
Alignment explanation
Indices: 46843132--46843309 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 26
46843122 TAAATTGTAC
46843132 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
46843159 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
46843185 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
46843213 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA--TTGACTATGT
* *
46843241 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
46843268 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
46843295 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
46843310 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
26 1 0.01
27 103 0.80
28 25 0.19
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:46843248 original size:82 final size:81
Alignment explanation
Indices: 46843133--46843288 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
46843123 AAATTGTACA
* *
46843133 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
46843197 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
46843214 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
46843279 TGCGAGTTGA
65 TGCGAATTGA
46843289 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:46843300 original size:82 final size:81
Alignment explanation
Indices: 46843129--46843309 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
46843119 GATTAAATTG
* *
46843129 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
46843194 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
46843210 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
46843274 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
46843292 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
46843310 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:46843320 original size:27 final size:27
Alignment explanation
Indices: 46843214--46843320 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
46843204 TGACCATGCG
* * * *
46843214 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
46843242 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
46843269 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
46843296 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
46843321 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:46851754 original size:21 final size:21
Alignment explanation
Indices: 46851728--46851767 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
46851718 TGGAATTGGT
*
46851728 CACATGGGTGTATGCCCCTTC
1 CACATGGGCGTATGCCCCTTC
*
46851749 CACATGGGCGTGTGCCCCT
1 CACATGGGCGTATGCCCCT
46851768 ATGTCAAGCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.12, C:0.35, G:0.28, T:0.25
Consensus pattern (21 bp):
CACATGGGCGTATGCCCCTTC
Found at i:46858112 original size:46 final size:46
Alignment explanation
Indices: 46858016--46858134 Score: 134
Period size: 46 Copynumber: 2.5 Consensus size: 46
46858006 TTTTGAGAGT
*
46858016 TAGTGGAAGACCATGTCTGGGACATGGCATTGGCATTGAGACGAGTGC
1 TAGTGTAAGA-CATGTCTGGGACAT-GCATTGGCATTGAGACGAGTGC
* * *
46858064 TAGTGTAATACATGTCTTGGACATGCATTGGCCTTGAGAC-A-TAAGC
1 TAGTGTAAGACATGTCTGGGACATGCATTGGCATTGAGACGAGT--GC
* *
46858110 TAGTTTTAGACATGTCTGGGACATG
1 TAGTGTAAGACATGTCTGGGACATG
46858135 GCATCGACAC
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
44 1 0.02
45 1 0.02
46 38 0.62
47 13 0.21
48 8 0.13
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (46 bp):
TAGTGTAAGACATGTCTGGGACATGCATTGGCATTGAGACGAGTGC
Found at i:46871637 original size:15 final size:16
Alignment explanation
Indices: 46871611--46871645 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
46871601 TTGGAGTAAT
46871611 TCCTTACCCCCTCTTC
1 TCCTTACCCCCTCTTC
*
46871627 TCCTT-CCCCCTTTTC
1 TCCTTACCCCCTCTTC
46871642 TCCT
1 TCCT
46871646 CTTCTAGAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 13 0.72
16 5 0.28
ACGTcount: A:0.03, C:0.54, G:0.00, T:0.43
Consensus pattern (16 bp):
TCCTTACCCCCTCTTC
Found at i:46876128 original size:30 final size:30
Alignment explanation
Indices: 46876094--46876154 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
46876084 TCCTTAACTC
46876094 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
46876124 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
46876154 A
1 A
46876155 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:46896656 original size:48 final size:47
Alignment explanation
Indices: 46896595--46896763 Score: 220
Period size: 48 Copynumber: 3.6 Consensus size: 47
46896585 ATTTGTGAGA
*
46896595 GCTAGTGTAAGACCATGTTTGGGACATGGCATCGACATTGAGACAAGT
1 GCTAGTGTAAGA-CATGTCTGGGACATGGCATCGACATTGAGACAAGT
*
46896643 GCTAGTGTAAGACCATGTTTGGGACATGGCATCGACATTGAGACAAGT
1 GCTAGTGTAAGA-CATGTCTGGGACATGGCATCGACATTGAGACAAGT
* * *
46896691 GCTAGTGTAAGACATGTCTAGGACAT-GCATC-ACCCTCGAGAC--GT
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGA-CATTGAGACAAGT
46896735 AAGCTAGTGTAAGACATGTCTGGGACATG
1 --GCTAGTGTAAGACATGTCTGGGACATG
46896764 CGTCGACTAC
Statistics
Matches: 112, Mismatches: 5, Indels: 9
0.89 0.04 0.07
Matches are distributed among these distances:
44 2 0.02
45 1 0.01
46 37 0.33
47 12 0.11
48 60 0.54
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.24
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGGCATCGACATTGAGACAAGT
Found at i:46896777 original size:46 final size:46
Alignment explanation
Indices: 46896594--46896817 Score: 201
Period size: 48 Copynumber: 4.8 Consensus size: 46
46896584 CATTTGTGAG
* *
46896594 AGCTAGTGTAAGACCATGTTTGGGACATGGCATCGACATTGAGACA
1 AGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATCGAGACA
* *
46896640 AGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGACATTGAGACA
1 A--GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATCGAGACA
* *
46896688 AGTGCTAGTGTAAGA-CATGTCTAGGACAT-GCATC-ACCCTCGAGACGTA
1 A--GCTAGTGTAAGACCATGTCTGGGACATGGCATCGA-CATCGAGAC--A
* *
46896736 AGCTAGTGTAAGA-CATGTCTGGGACAT-GCGTCGAC-TACGAGATGCT
1 AGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACAT-CGAGA--CA
* * *
46896782 AG-TCAGTGTAAGACCATGTCTCGAACATGGCTTCGA
1 AGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGA
46896818 TGTGAGATAT
Statistics
Matches: 156, Mismatches: 10, Indels: 22
0.83 0.05 0.12
Matches are distributed among these distances:
45 3 0.02
46 59 0.38
47 25 0.16
48 69 0.44
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.24
Consensus pattern (46 bp):
AGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATCGAGACA
Found at i:46898024 original size:21 final size:21
Alignment explanation
Indices: 46898000--46898039 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
46897990 TGGAATTGGC
*
46898000 CACATGGGCGTGTGCCCCTTT
1 CACATGAGCGTGTGCCCCTTT
46898021 CACATGAGCGTGTGCCCCT
1 CACATGAGCGTGTGCCCCT
46898040 ATGTCAAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.12, C:0.35, G:0.28, T:0.25
Consensus pattern (21 bp):
CACATGAGCGTGTGCCCCTTT
Found at i:46902346 original size:28 final size:27
Alignment explanation
Indices: 46902282--46902433 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
46902272 TTATTAAGTC
* *
46902282 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
46902309 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCA-ACT
*
46902337 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
46902364 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
46902392 CGCACACTTAGTGCTACATATTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
46902419 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
46902434 GCACAATTTA
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 66 0.56
28 52 0.44
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:46902366 original size:55 final size:55
Alignment explanation
Indices: 46902282--46902458 Score: 246
Period size: 55 Copynumber: 3.2 Consensus size: 55
46902272 TTATTAAGTC
* * *
46902282 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* *
46902337 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* * * * * *
46902392 CGCACACTTAGTGCTACATATTCAATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAA-TCAAACT
46902448 CGCACACTTAG
1 CGCACACTTAG
46902459 CGCCAATCTC
Statistics
Matches: 109, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
55 93 0.85
56 16 0.15
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:46909333 original size:29 final size:30
Alignment explanation
Indices: 46909299--46909378 Score: 108
Period size: 29 Copynumber: 2.7 Consensus size: 30
46909289 TCGAGCATAG
*
46909299 GGGTAAAATGGTTATTTTGCCAAAGTCTAA
1 GGGTAAAATGGTTATTTTGCCAAACTCTAA
* *
46909329 -GGTAAAATGATTATTTTGCCAAACTTTAA
1 GGGTAAAATGGTTATTTTGCCAAACTCTAA
* *
46909358 GGGCAAAATGGTCATTTTGCC
1 GGGTAAAATGGTTATTTTGCC
46909379 GAAGATGTGA
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
29 26 0.60
30 17 0.40
ACGTcount: A:0.33, C:0.12, G:0.21, T:0.34
Consensus pattern (30 bp):
GGGTAAAATGGTTATTTTGCCAAACTCTAA
Found at i:46909869 original size:46 final size:47
Alignment explanation
Indices: 46909768--46909987 Score: 220
Period size: 47 Copynumber: 4.7 Consensus size: 47
46909758 TATGAGAGCT
* * * *
46909768 AGTGTAAGACCATGTCTAGGACATGGCATCAGCATTGAGATCAGT-GCT
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAGA-CA-TAGCC
*
46909816 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACATAAGCC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAGACAT-AGCC
* *
46909862 AGTGTAAGA-CATGTCTAGGACAT-GCATCGG-CTACGAGATGATAGTC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCT-CGAGA-CATAGCC
* * * *
46909908 AGTGTAAGACCATGTCTAGGACATGGCAT-TGACTTGAGATATGAGCC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAGACAT-AGCC
* *
46909955 AGTGTCAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGC
46909988 ACCTTACCCA
Statistics
Matches: 147, Mismatches: 16, Indels: 18
0.81 0.09 0.10
Matches are distributed among these distances:
44 1 0.01
45 4 0.03
46 62 0.42
47 64 0.44
48 16 0.11
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAGACATAGCC
Found at i:46918059 original size:37 final size:37
Alignment explanation
Indices: 46918009--46918087 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
46917999 TTATTACGAA
* * *
46918009 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
46918046 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
46918083 GTCTT
1 GTCTT
46918088 TGGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:46918296 original size:47 final size:47
Alignment explanation
Indices: 46918205--46918643 Score: 700
Period size: 47 Copynumber: 9.4 Consensus size: 47
46918195 GCCCTTCGGG
* *
46918205 ACTTATCACATTGATCACATC-GCCATTA-GCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
46918253 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
46918302 ACTTTCACATTCATCACATCGGCCATTAGGCC-TATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
46918350 ACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
46918397 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA-ATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
46918443 ACTTTCACATTCATCACATCGGCCATTAGG-C--AT-ACA-ATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
46918485 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
46918532 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
46918579 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
46918626 ACTTTCACATT-ATCACAT
1 ACTTTCACATTCATCACAT
46918644 ATATACACTT
Statistics
Matches: 377, Mismatches: 5, Indels: 20
0.94 0.01 0.05
Matches are distributed among these distances:
41 1 0.00
42 37 0.10
43 3 0.01
45 3 0.01
46 44 0.12
47 173 0.46
48 58 0.15
49 58 0.15
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:46918508 original size:135 final size:139
Alignment explanation
Indices: 46918205--46918643 Score: 703
Period size: 135 Copynumber: 3.1 Consensus size: 139
46918195 GCCCTTCGGG
*
46918205 ACTTATCACATTGATCACATC-GCCATTA-GCCCTATCACATATATATACACTTTCACATTCATC
1 ACTT-TCACATT-ATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATC
*
46918268 ACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
62 ACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46918333 CTATCACATATATATAC
125 CTATCAC--ATATATAC
46918350 ACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
1 ACTTTCACA-TTATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
46918415 TCGGCCATTAGGCCTTATCACATA-ATACACTTTCACATTCATCACATCGGCCATTAGG-C-AT-
65 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATC
46918476 ACA-ATATAC
130 ACATATATAC
46918485 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
1 ACTTTCACATT-ATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
46918550 TCGGCCATTAGGCATTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
65 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC-TAT
46918615 CACATATATAC
129 CACATATATAC
46918626 ACTTTCACATTATCACAT
1 ACTTTCACATTATCACAT
46918644 ATATACACTT
Statistics
Matches: 281, Mismatches: 3, Indels: 25
0.91 0.01 0.08
Matches are distributed among these distances:
134 2 0.01
135 91 0.32
136 35 0.12
137 1 0.00
138 2 0.01
139 4 0.01
140 11 0.04
141 51 0.18
142 3 0.01
144 59 0.21
145 13 0.05
146 9 0.03
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (139 bp):
ACTTTCACATTATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
CGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCA
CATATATAC
Found at i:46918570 original size:182 final size:188
Alignment explanation
Indices: 46918205--46918643 Score: 709
Period size: 182 Copynumber: 2.4 Consensus size: 188
46918195 GCCCTTCGGG
* *
46918205 ACTTATCACATTGATCACATC-GCCATTA-GCCCTATCACATATATATACACTTTCACATTCATC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATC
46918268 ACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63 ACATCGGCCATTAGG-CCTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
46918333 CTATCACATATATATACACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATAC
126 CTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
46918397 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA-ATACACTTTCACATTCATCACA
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
46918461 TCGGCCATTAGG-C-AT-AC-A-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
66 TCGGCCATTAGGCCTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCC-TAT
46918521 CAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
130 CACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
46918579 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT-ATCACA
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
46918643 T
66 T
46918644 ATATACACTT
Statistics
Matches: 239, Mismatches: 4, Indels: 18
0.92 0.02 0.07
Matches are distributed among these distances:
182 102 0.43
183 53 0.22
184 7 0.03
186 2 0.01
187 2 0.01
188 1 0.00
190 34 0.14
191 18 0.08
192 11 0.05
193 9 0.04
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (188 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATC
ACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
Found at i:46918595 original size:25 final size:25
Alignment explanation
Indices: 46918519--46918597 Score: 74
Period size: 25 Copynumber: 3.3 Consensus size: 25
46918509 ATTAGGCCTT
46918519 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
**** ***
46918544 ATCACAT-CGGCCA-TTAGGCATT-
1 ATCACATATATACACTTTCACATTC
46918566 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
46918591 ATCACAT
1 ATCACAT
46918598 CGGCCATTAG
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 14 0.38
ACGTcount: A:0.34, C:0.28, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:46922141 original size:39 final size:39
Alignment explanation
Indices: 46922076--46922285 Score: 246
Period size: 39 Copynumber: 5.4 Consensus size: 39
46922066 CAGATACCTC
* *
46922076 GGAC-TAGCCCGGATATAACACCAGCACGAATGCTCTTG
1 GGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTG
** *
46922114 GGGTTTAGCACGGATATATCACTAGCACGAATGCTCTTG
1 GGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTG
* * *
46922153 GAACTTAGCCCGGATACATCACTAGCACGAATGCTCTCG
1 GGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTG
*
46922192 GGACTTAGCCCGGATATATCACTAGCATGAATGCTCTTCG
1 GGACTTAGCCCGGATATATCACTAGCACGAATGCTCTT-G
* * * *
46922232 GAACTTAGTCCGGATATGGTCACTTAGCAC-AAAGC-CTTCG
1 GGACTTAGCCCGGATAT-ATCAC-TAGCACGAATGCTCTT-G
46922272 GGACTTAGCCCGGA
1 GGACTTAGCCCGGA
46922286 CATCATTCGA
Statistics
Matches: 146, Mismatches: 22, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
38 2 0.01
39 98 0.67
40 33 0.23
41 8 0.05
42 5 0.03
ACGTcount: A:0.27, C:0.26, G:0.24, T:0.23
Consensus pattern (39 bp):
GGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTG
Found at i:46922633 original size:29 final size:29
Alignment explanation
Indices: 46922591--46922668 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
46922581 CTTAATAATC
*
46922591 AACCACGC-CACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
46922620 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
46922649 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
46922669 ATCTCACAAC
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
28 6 0.14
29 37 0.86
ACGTcount: A:0.27, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:46922750 original size:42 final size:43
Alignment explanation
Indices: 46922650--46922751 Score: 179
Period size: 43 Copynumber: 2.4 Consensus size: 43
46922640 TGCATTTCAA
46922650 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTCTT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTCTT
* *
46922693 GCCCACACATTTAGTGCCAATCTCACAACCGTGAACACTT-TT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTCTT
46922735 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
46922752 TGAAAACCAA
Statistics
Matches: 55, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
42 17 0.31
43 38 0.69
ACGTcount: A:0.25, C:0.36, G:0.15, T:0.24
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTCTT
Found at i:46924637 original size:36 final size:37
Alignment explanation
Indices: 46924590--46924667 Score: 106
Period size: 36 Copynumber: 2.1 Consensus size: 37
46924580 CTTATACGAA
* *
46924590 GTCTTACCCGGACATAA-TCTCCACACGAAGTTAT-GG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
46924626 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
46924663 GTCTT
1 GTCTT
46924668 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
36 28 0.76
37 9 0.24
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:46924955 original size:47 final size:47
Alignment explanation
Indices: 46924891--46925212 Score: 591
Period size: 46 Copynumber: 7.0 Consensus size: 47
46924881 CATATATAAT
46924891 ACATATA-ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
1 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
46924937 ACATATATACACTTTCACATTCATCACATCGG-CATTAGGCC-TATC
1 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
46924982 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC-TATC
1 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
*
46925028 ACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATC
1 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
*
46925075 ACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
1 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
46925122 ACATATATACACTTTCACATTCATCAC-TCGGCCATTAGGCCTTATC
1 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
46925168 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
46925213 CTATCATTTC
Statistics
Matches: 268, Mismatches: 4, Indels: 7
0.96 0.01 0.03
Matches are distributed among these distances:
45 36 0.13
46 116 0.43
47 116 0.43
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (47 bp):
ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
Found at i:46925101 original size:93 final size:93
Alignment explanation
Indices: 46924891--46925212 Score: 578
Period size: 93 Copynumber: 3.5 Consensus size: 93
46924881 CATATATAAT
46924891 ACATATAACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACA
1 ACATAT-ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACA
46924956 TTCATCACATCGGCATTAGGCC-TATCAC
65 TTCATCACATCGGCATTAGGCCTTATCAC
*
46924984 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCC-TATCACATATATACACTTTCACAT
1 ACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
46925048 TCATCACATCGGCTATTAGGCCTTATCAC
66 TCATCACATCGGC-ATTAGGCCTTATCAC
46925077 ACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
1 ACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
46925142 TCATCAC-TCGGCCATTAGGCCTTATCAC
66 TCATCACATCGG-CATTAGGCCTTATCAC
*
46925170 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 ACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
46925213 CTATCATTTC
Statistics
Matches: 222, Mismatches: 3, Indels: 8
0.95 0.01 0.03
Matches are distributed among these distances:
91 37 0.17
92 42 0.19
93 111 0.50
94 32 0.14
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (93 bp):
ACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
TCATCACATCGGCATTAGGCCTTATCAC
Found at i:46929709 original size:42 final size:44
Alignment explanation
Indices: 46929644--46929755 Score: 149
Period size: 42 Copynumber: 2.6 Consensus size: 44
46929634 CATTGACTTA
*
46929644 TGATTTACGTGTAAGACCATGTCTGGGACATTGGCATC-ATATT
1 TGATTTACGTGTAAGACCATGTCTGGGACAGTGGCATCGATATT
* *
46929687 TGATTT-CGTGTAAGACCCTGTCTGGGATAGTGGCATCGATATT
1 TGATTTACGTGTAAGACCATGTCTGGGACAGTGGCATCGATATT
* * *
46929730 TGA-TTACATGTAATACCAAGTCTGGG
1 TGATTTACGTGTAAGACCATGTCTGGG
46929756 TCGTTGGCAT
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
42 30 0.50
43 30 0.50
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (44 bp):
TGATTTACGTGTAAGACCATGTCTGGGACAGTGGCATCGATATT
Found at i:46929764 original size:43 final size:42
Alignment explanation
Indices: 46929648--46929765 Score: 139
Period size: 43 Copynumber: 2.8 Consensus size: 42
46929638 GACTTATGAT
* *
46929648 TTACGTGTAAGACCATGTCTGGGACATTGGCATCATATTTGA
1 TTACGTGTAAGACCATGTCTGGGTCGTTGGCATCATATTTGA
* * *
46929690 TTTCGTGTAAGACCCTGTCTGGGATAG-TGGCATCGATATTTGA
1 TTACGTGTAAGACCATGTCTGGG-TCGTTGGCATC-ATATTTGA
* * *
46929733 TTACATGTAATACCAAGTCTGGGTCGTTGGCAT
1 TTACGTGTAAGACCATGTCTGGGTCGTTGGCAT
46929766 TGTACGAGCT
Statistics
Matches: 62, Mismatches: 11, Indels: 5
0.79 0.14 0.06
Matches are distributed among these distances:
42 30 0.48
43 32 0.52
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (42 bp):
TTACGTGTAAGACCATGTCTGGGTCGTTGGCATCATATTTGA
Found at i:46931450 original size:25 final size:25
Alignment explanation
Indices: 46931413--46931462 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
46931403 CCGTGTGCCT
46931413 CACACGACAAGTCAACATGTCCGTG
1 CACACGACAAGTCAACATGTCCGTG
* * *
46931438 CACACGGCTAGTCGACATGTCCGTG
1 CACACGACAAGTCAACATGTCCGTG
46931463 TCTTAGACCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.26, C:0.32, G:0.24, T:0.18
Consensus pattern (25 bp):
CACACGACAAGTCAACATGTCCGTG
Found at i:46935455 original size:18 final size:18
Alignment explanation
Indices: 46935432--46935466 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
46935422 TGGCGGATGC
46935432 ATAAACCGAAAAC-ACACG
1 ATAAACC-AAAACTACACG
46935450 ATAAACCAAAACTACAC
1 ATAAACCAAAACTACAC
46935467 CAAAACAAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.57, C:0.29, G:0.06, T:0.09
Consensus pattern (18 bp):
ATAAACCAAAACTACACG
Found at i:46935472 original size:17 final size:18
Alignment explanation
Indices: 46935431--46935472 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
46935421 CTGGCGGATG
46935431 CATAAACCGAAAACACAC
1 CATAAACCGAAAACACAC
*
46935449 GATAAACC-AAAACTACAC
1 CATAAACCGAAAAC-ACAC
46935467 CA-AAAC
1 CATAAAC
46935473 AAGCTCAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.57, C:0.31, G:0.05, T:0.07
Consensus pattern (18 bp):
CATAAACCGAAAACACAC
Found at i:46947435 original size:40 final size:39
Alignment explanation
Indices: 46947391--46947605 Score: 229
Period size: 39 Copynumber: 5.4 Consensus size: 39
46947381 AGCATGATTA
* * *
46947391 CTCTTCGGGACCTAGCTCGGATATAACACCAGCACGAATG
1 CTCTTCGGGACTTAGC-CGGATATATCACTAGCACGAATG
* *
46947431 CTCTTTGGG-TTTAGCACGGATATATCACTAGCACGAATG
1 CTCTTCGGGACTTAGC-CGGATATATCACTAGCACGAATG
* * * *
46947470 CTCTTTGGAACTTAGCCCAGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAG-CCGGATATATCACTAGCACGAATG
* *
46947510 CTCCTCGGGACTTAGCCGGATATATCACTAGCATGAATG
1 CTCTTCGGGACTTAGCCGGATATATCACTAGCACGAATG
* * *
46947549 CTCTTCGGAACTTAGTCCGGATATGGTCACTTAGCAC-AAAG
1 CTCTTCGGGACTTAG-CCGGATAT-ATCAC-TAGCACGAATG
46947590 C-CTTCGGGACTTAGCC
1 CTCTTCGGGACTTAGCC
46947606 CGGACATCAT
Statistics
Matches: 148, Mismatches: 22, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
39 69 0.47
40 65 0.44
41 9 0.06
42 5 0.03
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CTCTTCGGGACTTAGCCGGATATATCACTAGCACGAATG
Found at i:46947597 original size:79 final size:79
Alignment explanation
Indices: 46947441--46947605 Score: 217
Period size: 79 Copynumber: 2.1 Consensus size: 79
46947431 CTCTTTGGGT
*
46947441 TTAGCACGGATATATCACTAGCACGAATGCTCTTTGGAACTTAGCCCAGATACATCACTAGCACG
1 TTAGC-CGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCAGATACATCACTAGCACG
*
46947506 AATGCTCCTCGGGAC
65 AAAGCTCCTCGGGAC
* * * **
46947521 TTAGCCGGATATATCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATATGGTCACTTAGCAC
1 TTAGCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCAGATA-CATCAC-TAGCAC
*
46947586 -AAAGC-CTTCGGGAC
64 GAAAGCTCCTCGGGAC
46947600 TTAGCC
1 TTAGCC
46947606 CGGACATCAT
Statistics
Matches: 75, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
79 56 0.75
80 13 0.17
81 6 0.08
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.25
Consensus pattern (79 bp):
TTAGCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCAGATACATCACTAGCACGA
AAGCTCCTCGGGAC
Found at i:46947966 original size:29 final size:29
Alignment explanation
Indices: 46947915--46947993 Score: 88
Period size: 29 Copynumber: 2.7 Consensus size: 29
46947905 CTTAATAATC
* * *
46947915 AACCACGCCCACTTATTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
46947945 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
46947974 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
46947994 ATCTCACAAC
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
28 3 0.07
29 36 0.86
30 3 0.07
ACGTcount: A:0.27, C:0.34, G:0.14, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:46948036 original size:43 final size:43
Alignment explanation
Indices: 46947975--46948077 Score: 188
Period size: 43 Copynumber: 2.4 Consensus size: 43
46947965 TGCATTTCAA
46947975 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
* *
46948018 GCCCGCACATTTAGTGCCAATCTCACAACCGTGAACACTTCTT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
46948061 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
46948078 TGAAAACCAA
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.25, C:0.36, G:0.16, T:0.23
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Done.