Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 149 of 255
Found at i:48331715 original size:27 final size:27
Alignment explanation
Indices: 48331685--48331937 Score: 299
Period size: 27 Copynumber: 9.4 Consensus size: 27
48331675 CCCAAAAGTA
* *
48331685 GTAAAATGACCATAATGCCCCTATAGT
1 GTAAAATGACCGTAATGCCCCTATAGG
* * *
48331712 GTAAAATGACCATAATGCCCTTGTAGG
1 GTAAAATGACCGTAATGCCCCTATAGG
* *
48331739 GTAAAATGACCGTAATACCCCTGTAGG
1 GTAAAATGACCGTAATGCCCCTATAGG
48331766 GTAAAATGACCGTAATGCCCCTATAGG
1 GTAAAATGACCGTAATGCCCCTATAGG
* *
48331793 GTAAAATGACCGTAATGCCCATGTAGG
1 GTAAAATGACCGTAATGCCCCTATAGG
** *
48331820 GTAAAATGACTATAATACCCCTATAGG
1 GTAAAATGACCGTAATGCCCCTATAGG
*
48331847 GTAAAATGACCGTAATGCCCCTATAAG
1 GTAAAATGACCGTAATGCCCCTATAGG
* ** * *
48331874 GTAAAATAATTGTAATGCCCTTGTAGG
1 GTAAAATGACCGTAATGCCCCTATAGG
* * * * *
48331901 GTAAAATGACTGAAATACCCCTGTATG
1 GTAAAATGACCGTAATGCCCCTATAGG
48331928 GTAAAATGAC
1 GTAAAATGAC
48331938 GATTATGCCC
Statistics
Matches: 195, Mismatches: 31, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 195 1.00
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (27 bp):
GTAAAATGACCGTAATGCCCCTATAGG
Found at i:48331782 original size:81 final size:80
Alignment explanation
Indices: 48331685--48331937 Score: 380
Period size: 81 Copynumber: 3.1 Consensus size: 80
48331675 CCCAAAAGTA
* * *
48331685 GTAAAATGACCATAATGCCCCTATAGTGTAAAATGACCATAATGCCCTTGTAGGGTAAAATGACC
1 GTAAAATGACCGTAATGCCCCTATAG-GTAAAATGACCGTAATGCCCTTGTAGGGTAAAATGACT
48331750 GTAATACCCCTGTAGG
65 GTAATACCCCTGTAGG
*
48331766 GTAAAATGACCGTAATGCCCCTATAGGGTAAAATGACCGTAATGCCCATGTAGGGTAAAATGACT
1 GTAAAATGACCGTAATGCCCCTATA-GGTAAAATGACCGTAATGCCCTTGTAGGGTAAAATGACT
* *
48331831 ATAATACCCCTATAGG
65 GTAATACCCCTGTAGG
* **
48331847 GTAAAATGACCGTAATGCCCCTATAAGGTAAAATAATTGTAATGCCCTTGTAGGGTAAAATGACT
1 GTAAAATGACCGTAATGCCCCTAT-AGGTAAAATGACCGTAATGCCCTTGTAGGGTAAAATGACT
* *
48331912 GAAATACCCCTGTATG
65 GTAATACCCCTGTAGG
48331928 GTAAAATGAC
1 GTAAAATGAC
48331938 GATTATGCCC
Statistics
Matches: 156, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
81 154 0.99
82 2 0.01
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (80 bp):
GTAAAATGACCGTAATGCCCCTATAGGTAAAATGACCGTAATGCCCTTGTAGGGTAAAATGACTG
TAATACCCCTGTAGG
Found at i:48332151 original size:54 final size:52
Alignment explanation
Indices: 48332078--48332198 Score: 125
Period size: 54 Copynumber: 2.3 Consensus size: 52
48332068 GGAAGTATTG
* * * *
48332078 TACTGGTGACTATGTCACATTCACTATTACTGGTGGCTATGCCACAATTACTGA
1 TACTGGTGGCTTTGCCACATTCACTATTACTGGTAGCTATGCCAC-ATTA-TGA
* * * ** *
48332132 TACTGGTGGCTTTGCCACATTTACTGTTTCTGGTAGCTATGCTGCATTATTA
1 TACTGGTGGCTTTGCCACATTCACTATTACTGGTAGCTATGCCACATTATGA
*
48332184 TACTGGTAGCTTTGC
1 TACTGGTGGCTTTGC
48332199 TGCGTTATTA
Statistics
Matches: 56, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
52 16 0.29
53 4 0.07
54 36 0.64
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.38
Consensus pattern (52 bp):
TACTGGTGGCTTTGCCACATTCACTATTACTGGTAGCTATGCCACATTATGA
Found at i:48332164 original size:27 final size:27
Alignment explanation
Indices: 48332078--48332173 Score: 111
Period size: 27 Copynumber: 3.6 Consensus size: 27
48332068 GGAAGTATTG
* * * *
48332078 TACTGGTGACTATGTCACATTCACTAT
1 TACTGGTGGCTATGCCACATTTACTGT
* *
48332105 TACTGGTGGCTATGCCACAATTACTGA
1 TACTGGTGGCTATGCCACATTTACTGT
*
48332132 TACTGGTGGCTTTGCCACATTTACTGT
1 TACTGGTGGCTATGCCACATTTACTGT
* *
48332159 TTCTGGTAGCTATGC
1 TACTGGTGGCTATGC
48332174 TGCATTATTA
Statistics
Matches: 57, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (27 bp):
TACTGGTGGCTATGCCACATTTACTGT
Found at i:48332192 original size:25 final size:25
Alignment explanation
Indices: 48332161--48332208 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
48332151 TTTACTGTTT
48332161 CTGGTAGCTATGCTGCATTATTATA
1 CTGGTAGCTATGCTGCATTATTATA
* *
48332186 CTGGTAGCTTTGCTGCGTTATTA
1 CTGGTAGCTATGCTGCATTATTA
48332209 GTGTGCTGGC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.19, C:0.17, G:0.23, T:0.42
Consensus pattern (25 bp):
CTGGTAGCTATGCTGCATTATTATA
Found at i:48335968 original size:33 final size:34
Alignment explanation
Indices: 48335922--48335987 Score: 80
Period size: 34 Copynumber: 2.0 Consensus size: 34
48335912 CTGATTCTAT
* *
48335922 AATGGGCTTAGGCCC-CACTGCTACTGTTACTGA
1 AATGAGCTCAGGCCCACACTGCTACTGTTACTGA
* * *
48335955 AATGAGCTCAGGCCCAGATTGCTATTGTTACTG
1 AATGAGCTCAGGCCCACACTGCTACTGTTACTG
48335988 TAAAGGGCTA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
33 13 0.48
34 14 0.52
ACGTcount: A:0.23, C:0.24, G:0.24, T:0.29
Consensus pattern (34 bp):
AATGAGCTCAGGCCCACACTGCTACTGTTACTGA
Found at i:48341688 original size:6 final size:6
Alignment explanation
Indices: 48341666--48341735 Score: 95
Period size: 6 Copynumber: 11.5 Consensus size: 6
48341656 AGGTGAAATT
* * * *
48341666 AATAAA AACATAA AATGAA AATGAA AATGAA AATAAA AATAAA AATAAA
1 AATAAA AATA-AA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
48341715 AATAAA AATAAA AATAAA AAT
1 AATAAA AATAAA AATAAA AAT
48341736 GGAAATTAAA
Statistics
Matches: 59, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
6 55 0.93
7 4 0.07
ACGTcount: A:0.77, C:0.01, G:0.04, T:0.17
Consensus pattern (6 bp):
AATAAA
Found at i:48342684 original size:14 final size:15
Alignment explanation
Indices: 48342660--48342689 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
48342650 GGATATCAAA
48342660 ACAAGAATTAAGAAC
1 ACAAGAATTAAGAAC
48342675 ACAA-AATTAAGAAC
1 ACAAGAATTAAGAAC
48342689 A
1 A
48342690 AGTTAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.63, C:0.13, G:0.10, T:0.13
Consensus pattern (15 bp):
ACAAGAATTAAGAAC
Found at i:48349351 original size:40 final size:40
Alignment explanation
Indices: 48349292--48349599 Score: 553
Period size: 40 Copynumber: 7.7 Consensus size: 40
48349282 GAGCATTGGA
*
48349292 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
48349332 ATATATCCGGGCTAGGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
48349372 ATATATCCGGGCTAGGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
48349412 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
48349452 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
48349492 ATATATCCGGGCTAGGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
48349532 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
48349572 ATATGTTCGGGCTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
48349600 ATGTGTTTGC
Statistics
Matches: 261, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 261 1.00
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:48357974 original size:40 final size:40
Alignment explanation
Indices: 48357915--48358222 Score: 553
Period size: 40 Copynumber: 7.7 Consensus size: 40
48357905 GAGCATTGGA
*
48357915 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
48357955 ATATATCCGGGCTAGGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
48357995 ATATATCCGGGCTAGGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
48358035 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
48358075 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
48358115 ATATATCCGGGCTAGGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
48358155 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
48358195 ATATGTTCGGGCTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
48358223 ATGTGTTTGC
Statistics
Matches: 261, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 261 1.00
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:48373774 original size:74 final size:77
Alignment explanation
Indices: 48373686--48373853 Score: 243
Period size: 85 Copynumber: 2.1 Consensus size: 77
48373676 GGCCGGCCAT
48373686 GAGCATGGGTGGACAAGATGTTATGGCT-A-A-AAACATGTTGGGGTAGTGCATTATGTAAGGAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAATATAAACATGTTGGGGTAGTGCATTATGTAAGGAT
48373748 TAATAAAATAAA
66 TAATAAAATAAA
48373760 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCT----A-A--T-ATAAACATGTTGGGGTAGTGCATTAT
48373825 GTAAGGATTAATAAAATAAA
58 GTAAGGATTAATAAAATAAA
48373845 GAGCATGGG
1 GAGCATGGG
48373854 CAATAAAATA
Statistics
Matches: 83, Mismatches: 0, Indels: 11
0.88 0.00 0.12
Matches are distributed among these distances:
74 28 0.34
80 1 0.01
84 1 0.01
85 53 0.64
ACGTcount: A:0.38, C:0.08, G:0.29, T:0.26
Consensus pattern (77 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAATATAAACATGTTGGGGTAGTGCATTATGTAAGGAT
TAATAAAATAAA
Found at i:48375120 original size:39 final size:40
Alignment explanation
Indices: 48375019--48375203 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
48375009 TCGAATGATG
* * *
48375019 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* * *
48375058 ATCCGGACTAAGAT-CCGAAGGCATTTGTCCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
48375099 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
48375138 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
48375177 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
48375204 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 34 0.28
40 79 0.65
41 9 0.07
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:48375155 original size:79 final size:81
Alignment explanation
Indices: 48375019--48375201 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 81
48375009 TCGAATGATG
* *
48375019 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
48375083 TGTCCGAGATACTA-A
66 TGTCCGAGATACTATA
* * * **
48375098 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
* *
48375160 TTTGTGCGAGTTACTATA
64 TTTGTCCGAGATACTATA
* *
48375178 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
48375202 TGAACGAGTA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTCCGAGATACTATA
Found at i:48375225 original size:79 final size:79
Alignment explanation
Indices: 48375072--48375226 Score: 190
Period size: 79 Copynumber: 2.0 Consensus size: 79
48375062 GGACTAAGAT
* **
48375072 CCGAAGGCATTTGTCCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTCCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
48375137 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* * * *
48375151 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTCCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
48375214 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
48375227 ATTTTGAAGG
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
78 2 0.03
79 39 0.60
80 24 0.37
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTCCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:48381458 original size:40 final size:40
Alignment explanation
Indices: 48381394--48381610 Score: 314
Period size: 40 Copynumber: 5.5 Consensus size: 40
48381384 AAGCATCTTT
* * *
48381394 GGGATTTAG-CCGGATATAACAACTCGCACAAATGGCTTC
1 GGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTC
* *
48381433 GGGTCTTGGCCCGGATATAGCAACTCGCACAAATGCCTTC
1 GGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTC
*
48381473 GGGACTTAGCCCGGATATAGTCAA-TAGCACAAATGCCTTC
1 GGGACTTAGCCCGGATATAG-CAACTCGCACAAATGCCTTC
* * *
48381513 GGGACTTAGCCCGGATATAGTC-ACTAGCAAAAAAGCCTTC
1 GGGACTTAGCCCGGATATAG-CAACTCGCACAAATGCCTTC
48381553 GGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTC
1 GGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTC
48381593 GGGACTTAGCCCGGATAT
1 GGGACTTAGCCCGGATAT
48381611 CATTCGAATA
Statistics
Matches: 161, Mismatches: 13, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
39 8 0.05
40 150 0.93
41 3 0.02
ACGTcount: A:0.28, C:0.26, G:0.24, T:0.22
Consensus pattern (40 bp):
GGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTC
Found at i:48391012 original size:47 final size:47
Alignment explanation
Indices: 48390958--48391151 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
48390948 TTAGGATTTT
** * *
48390958 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
48391005 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
48391052 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
48391099 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATAGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
48391146 ATGTGA
1 ATGTGA
48391152 AATATGTATG
Statistics
Matches: 132, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 132 1.00
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:48391058 original size:22 final size:22
Alignment explanation
Indices: 48390987--48391058 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
48390977 GTATATATGA
48390987 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
48391009 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
48391034 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
48391056 GAT
1 GAT
48391059 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:48391107 original size:25 final size:25
Alignment explanation
Indices: 48391032--48391107 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
48391022 ATGCATATAT
48391032 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
48391057 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
48391079 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
48391104 GTGA
1 GTGA
48391108 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:48391286 original size:98 final size:96
Alignment explanation
Indices: 48391122--48391305 Score: 289
Period size: 98 Copynumber: 1.9 Consensus size: 96
48391112 GAACATGCAT
* * *
48391122 ATATGTGGTAAAGCCGAATAGCTAATGTGAAATATGTATGAGATATGTATATGTGGTTAAGTCGA
1 ATATGTGGTAAAGCCGAATAGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
48391187 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
*
48391218 ATATGTGGTAAAGCCGAAT-GGTCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
1 ATATGTGGTAAAGCCGAATAGCT-AATGTG-AA-ATATATATGAGATATGTATATGTGGTAAAGC
*
48391282 CGAATGGCTAGTGTGAAATATGTA
63 CGAATGGCTAATGTGAAATATGTA
48391306 GGCGATGTGC
Statistics
Matches: 80, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
95 2 0.03
96 25 0.31
97 2 0.03
98 51 0.64
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.32
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATAGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:48391321 original size:50 final size:48
Alignment explanation
Indices: 48391121--48391305 Score: 282
Period size: 48 Copynumber: 3.8 Consensus size: 48
48391111 TGAACATGCA
*
48391121 TATATGTGGTAAAGCCGAATAGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
48391169 TATATGTGGTTAAGTCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
48391217 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
48391267 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
48391306 GGCGATGTGC
Statistics
Matches: 123, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
47 1 0.01
48 76 0.62
49 4 0.03
50 41 0.33
51 1 0.01
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:48391501 original size:37 final size:37
Alignment explanation
Indices: 48391451--48391563 Score: 199
Period size: 37 Copynumber: 3.1 Consensus size: 37
48391441 GGAAATATAT
*
48391451 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
48391488 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
48391525 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
48391562 TC
1 TC
48391564 TGAGCTAAAG
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 73 1.00
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:48393192 original size:40 final size:40
Alignment explanation
Indices: 48392829--48393180 Score: 587
Period size: 40 Copynumber: 8.8 Consensus size: 40
48392819 GAGAATTGAG
48392829 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
48392869 AGTGATATATCCGGGCTAAGTCCTGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
48392909 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
48392949 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
48392989 AGTGATGTATTCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
48393029 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
48393069 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
48393109 AGTGATGTATCTGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
48393149 GGTGTTATATTCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
48393181 ATCATGCTGG
Statistics
Matches: 292, Mismatches: 20, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 292 1.00
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:48396329 original size:47 final size:47
Alignment explanation
Indices: 48396275--48396468 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
48396265 TTAGGATTTT
** * *
48396275 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
48396322 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
48396369 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
48396416 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
48396463 ATGTGA
1 ATGTGA
48396469 AATATGTATG
Statistics
Matches: 133, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 133 1.00
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:48396375 original size:22 final size:22
Alignment explanation
Indices: 48396304--48396375 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
48396294 GTATATATGA
48396304 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
48396326 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
48396351 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
48396373 GAT
1 GAT
48396376 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:48396424 original size:25 final size:25
Alignment explanation
Indices: 48396349--48396424 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
48396339 ATGCATATAT
48396349 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
48396374 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
48396396 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
48396421 GTGA
1 GTGA
48396425 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:48396597 original size:98 final size:96
Alignment explanation
Indices: 48396439--48396622 Score: 316
Period size: 98 Copynumber: 1.9 Consensus size: 96
48396429 GAACATGCAT
*
48396439 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
48396504 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
48396535 ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATATATGAGATATGTATATGTGGTAAAGC
*
48396599 CGAATGGCTAGTGTGAAATATGTA
63 CGAATGGCTAATGTGAAATATGTA
48396623 GGCGATGTGC
Statistics
Matches: 83, Mismatches: 2, Indels: 4
0.93 0.02 0.04
Matches are distributed among these distances:
95 1 0.01
96 27 0.33
97 2 0.02
98 53 0.64
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.30
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:48396638 original size:50 final size:48
Alignment explanation
Indices: 48396438--48396622 Score: 309
Period size: 48 Copynumber: 3.8 Consensus size: 48
48396428 TGAACATGCA
48396438 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
48396486 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
48396534 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
48396584 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
48396623 GGCGATGTGC
Statistics
Matches: 128, Mismatches: 5, Indels: 8
0.91 0.04 0.06
Matches are distributed among these distances:
47 1 0.01
48 81 0.63
49 4 0.03
50 41 0.32
51 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:48396876 original size:37 final size:37
Alignment explanation
Indices: 48396768--48396876 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
48396758 GGAAATATAT
*
48396768 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
48396805 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
48396842 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
48396877 CGTCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:48403641 original size:40 final size:40
Alignment explanation
Indices: 48403582--48403802 Score: 313
Period size: 40 Copynumber: 5.5 Consensus size: 40
48403572 ACCCAAGCAT
* * *
48403582 CTTCGGGATTTAG-CCGGATATAACAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGC
* * *
48403621 CTTCGGGTCTTGGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGC
48403661 CTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGC
** *
48403701 CTTCGAAACTTAGCCCGGATATAGTC-ACTAGCACAAAAGC
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGC
*
48403741 CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGC
48403781 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
48403803 CATTCGAATA
Statistics
Matches: 163, Mismatches: 15, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
39 12 0.07
40 148 0.91
41 3 0.02
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGC
Found at i:48407276 original size:10 final size:10
Alignment explanation
Indices: 48407261--48407316 Score: 51
Period size: 10 Copynumber: 5.7 Consensus size: 10
48407251 TTAGGCTGTT
48407261 TTGGGCCATG
1 TTGGGCCATG
**
48407271 TTGGGCCAAA
1 TTGGGCCATG
*
48407281 ATGGGCCATG
1 TTGGGCCATG
**
48407291 TTGGGCCAAA
1 TTGGGCCATG
*
48407301 ATGGGCCATG
1 TTGGGCCATG
48407311 -TGGGCC
1 TTGGGCC
48407317 CATGAGCTCG
Statistics
Matches: 35, Mismatches: 11, Indels: 1
0.74 0.23 0.02
Matches are distributed among these distances:
9 6 0.17
10 29 0.83
ACGTcount: A:0.20, C:0.21, G:0.38, T:0.21
Consensus pattern (10 bp):
TTGGGCCATG
Found at i:48407287 original size:20 final size:20
Alignment explanation
Indices: 48407262--48407316 Score: 103
Period size: 20 Copynumber: 2.8 Consensus size: 20
48407252 TAGGCTGTTT
48407262 TGGGCCATGTTGGGCCAAAA
1 TGGGCCATGTTGGGCCAAAA
48407282 TGGGCCATGTTGGGCCAAAA
1 TGGGCCATGTTGGGCCAAAA
48407302 TGGGCCATG-TGGGCC
1 TGGGCCATGTTGGGCC
48407317 CATGAGCTCG
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
19 6 0.17
20 29 0.83
ACGTcount: A:0.20, C:0.22, G:0.38, T:0.20
Consensus pattern (20 bp):
TGGGCCATGTTGGGCCAAAA
Found at i:48409357 original size:47 final size:47
Alignment explanation
Indices: 48409281--48409492 Score: 309
Period size: 47 Copynumber: 4.5 Consensus size: 47
48409271 CTTCGGGACT
* * * * * *
48409281 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
48409328 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-CC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* *
48409374 TCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCT
1 T-ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
48409422 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
48409469 TATCACATATATACACATTCACAT
1 TATCACATATATACACTTTCACAT
48409493 CACAATTATC
Statistics
Matches: 151, Mismatches: 12, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
46 3 0.02
47 146 0.97
48 2 0.01
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
Found at i:48412221 original size:34 final size:34
Alignment explanation
Indices: 48412124--48412222 Score: 112
Period size: 34 Copynumber: 2.9 Consensus size: 34
48412114 TATACTGATT
* *
48412124 CTGTAATGGGCTTAGGCCCT-ACTGCTACTGTTA
1 CTGTAATGGGCTAAGGCCCTAACTGCTATTGTTA
* * *
48412157 CTGCAATGGGCTCAGGCCC-AGATTGCTATTGTTA
1 CTGTAATGGGCTAAGGCCCTA-ACTGCTATTGTTA
* *
48412191 CTGTAAAGGGCTAAGGCCCTAACTGATATTGT
1 CTGTAATGGGCTAAGGCCCTAACTGCTATTGT
48412223 CCCTATTACT
Statistics
Matches: 54, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
33 17 0.31
34 36 0.67
35 1 0.02
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.30
Consensus pattern (34 bp):
CTGTAATGGGCTAAGGCCCTAACTGCTATTGTTA
Found at i:48416121 original size:40 final size:39
Alignment explanation
Indices: 48416071--48416195 Score: 151
Period size: 39 Copynumber: 3.2 Consensus size: 39
48416061 CCCGAGTCCA
* * * * * *
48416071 ATTTCTAGCACAAAGCCTGTGGGACTTTAAGCCCGGATAT
1 ATTTCCAGCACATAGCCTG-CGGACCTCAAGTCCGGATAT
*
48416111 ATTTCCAGCACATAGCCTGCGGACCTCAAGTCCGAATAT
1 ATTTCCAGCACATAGCCTGCGGACCTCAAGTCCGGATAT
* *
48416150 GTTTCCAGCACGTAGCCTGCGGACCTCAAGTCCGGATAT
1 ATTTCCAGCACATAGCCTGCGGACCTCAAGTCCGGATAT
*
48416189 GTTTCCA
1 ATTTCCA
48416196 AGTATCACGC
Statistics
Matches: 75, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 58 0.77
40 17 0.23
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (39 bp):
ATTTCCAGCACATAGCCTGCGGACCTCAAGTCCGGATAT
Found at i:48426753 original size:96 final size:96
Alignment explanation
Indices: 48426637--48426826 Score: 308
Period size: 96 Copynumber: 2.0 Consensus size: 96
48426627 GTGTCCGAGG
* *
48426637 AAGTCTGTCATCAAAGGGAACGATGGAGCAGACAAGAAGCCCAAGAAACTTGGTTCGAGCAAGGG
1 AAGTCTATCATCAAAGGGAACAATGGAGCAGACAAGAAGCCCAAGAAACTTGGTTCGAGCAAGGG
*
48426702 AAAAGCCGAAGCCAAGAGGGTAAAGAGGAGT
66 AAAAGCCGAAGCCAAGAGGGCAAAGAGGAGT
* * *
48426733 AAGTCTATCATCGAAGGGAACAATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
1 AAGTCTATCATCAAAGGGAACAATGGAGCAGACAAGAAGCCCAAGAAACTTGGTTCGAGCAAGGG
* *
48426798 AAAAGCTGAAGCGAAGAGGGCAAAGAGGA
66 AAAAGCCGAAGCCAAGAGGGCAAAGAGGA
48426827 ACAAAAAGAA
Statistics
Matches: 86, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
96 86 1.00
ACGTcount: A:0.39, C:0.16, G:0.33, T:0.11
Consensus pattern (96 bp):
AAGTCTATCATCAAAGGGAACAATGGAGCAGACAAGAAGCCCAAGAAACTTGGTTCGAGCAAGGG
AAAAGCCGAAGCCAAGAGGGCAAAGAGGAGT
Found at i:48433759 original size:6 final size:6
Alignment explanation
Indices: 48433741--48433828 Score: 83
Period size: 6 Copynumber: 14.3 Consensus size: 6
48433731 AAGAAACATT
*
48433741 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAGGTA A-CAGA ATCAAA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
* *
48433790 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
48433829 GTGAATGCAA
Statistics
Matches: 68, Mismatches: 6, Indels: 16
0.76 0.07 0.18
Matches are distributed among these distances:
5 5 0.07
6 53 0.78
7 7 0.10
8 3 0.04
ACGTcount: A:0.50, C:0.16, G:0.16, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:48433762 original size:18 final size:18
Alignment explanation
Indices: 48433741--48433828 Score: 83
Period size: 19 Copynumber: 4.8 Consensus size: 18
48433731 AAGAAACATT
48433741 ATCAGAA-CTAGAATCAGA
1 ATCAGAATC-AGAATCAGA
48433759 ATCAGAATCAGAATCAGGTA
1 ATCAGAATCAGAATCA-G-A
*
48433779 A-CAGAATCAAAATCAGA
1 ATCAGAATCAGAATCAGA
*
48433796 ATCAGTATCAGGTAA-CAGA
1 ATCAGAATCA-G-AATCAGA
*
48433815 ATCAAAATCAGAAT
1 ATCAGAATCAGAAT
48433829 GTGAATGCAA
Statistics
Matches: 58, Mismatches: 5, Indels: 14
0.75 0.06 0.18
Matches are distributed among these distances:
17 4 0.07
18 23 0.40
19 27 0.47
20 4 0.07
ACGTcount: A:0.50, C:0.16, G:0.16, T:0.18
Consensus pattern (18 bp):
ATCAGAATCAGAATCAGA
Found at i:48433785 original size:31 final size:31
Alignment explanation
Indices: 48433750--48433828 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
48433740 TATCAGAACT
*
48433750 AGAATCAGAATCAGAATCAGAATCAGGTAAC
1 AGAATCAAAATCAGAATCAGAATCAGGTAAC
*
48433781 AGAATCAAAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGAATCAGGTAAC
48433812 AGAATCAAAATCAGAAT
1 AGAATCAAAATCAGAAT
48433829 GTGAATGCAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.51, C:0.15, G:0.16, T:0.18
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGAATCAGGTAAC
Found at i:48433786 original size:25 final size:25
Alignment explanation
Indices: 48433755--48433825 Score: 83
Period size: 25 Copynumber: 2.8 Consensus size: 25
48433745 GAACTAGAAT
48433755 CAGAATCAGAATCAGAATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
* *
48433780 CAGAATCAAAATCAGAATCA-GTAT
1 CAGAATCAGAATCAGAATCAGGTAA
*
48433804 CAGGTAA-CAGAATCAAAATCAG
1 CA-G-AATCAGAATCAGAATCAG
48433826 AATGTGAATG
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
24 5 0.13
25 32 0.82
26 2 0.05
ACGTcount: A:0.49, C:0.17, G:0.17, T:0.17
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:48434250 original size:27 final size:28
Alignment explanation
Indices: 48434188--48434250 Score: 67
Period size: 27 Copynumber: 2.3 Consensus size: 28
48434178 CAGTCACTTG
*
48434188 CCCACAAGGGCAAAACAGTCATTTAACA
1 CCCACAAGGGCAAAACAGTAATTTAACA
* ** *
48434216 CCC-TAAGGGCAAAATGGTAATTTTAC-
1 CCCACAAGGGCAAAACAGTAATTTAACA
48434242 CCCACAAGG
1 CCCACAAGG
48434251 TATCTCGGTA
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
26 3 0.11
27 22 0.79
28 3 0.11
ACGTcount: A:0.38, C:0.27, G:0.17, T:0.17
Consensus pattern (28 bp):
CCCACAAGGGCAAAACAGTAATTTAACA
Found at i:48434288 original size:27 final size:27
Alignment explanation
Indices: 48434231--48434613 Score: 482
Period size: 27 Copynumber: 14.3 Consensus size: 27
48434221 AGGGCAAAAT
* * * *
48434231 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
48434257 GGTAATTCCACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
48434284 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
48434311 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
48434338 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
48434365 GGTAATTCTACCATACTGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
48434392 GATAATTCTACCCTATAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
48434419 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
48434446 GGTAATTCTACTCTACA-GGGTTTTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** *
48434472 TATAATTCTACCCTACTGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** *
48434499 AATAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
48434526 GGTAATTCTACCCTACATGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
48434553 GGTAATTCTGCCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
48434580 AGTAATTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
48434607 GGTAATT
1 GGTAATT
48434614 ACACAAAGTA
Statistics
Matches: 309, Mismatches: 46, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
26 35 0.11
27 274 0.89
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:48434684 original size:54 final size:54
Alignment explanation
Indices: 48434626--48434829 Score: 133
Period size: 54 Copynumber: 3.8 Consensus size: 54
48434616 ACAAAGTAGG
** ** *** *
48434626 GGTATTTTTGTAATTTTATTGATCGAGGGTATTTTGGTAATTTTGTAAACCAAT
1 GGTATTTCAGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTGTAAACCAAT
* * * *
48434680 GGTATTTCAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAG
1 GGTATTTCAGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTGTAAACCAAT
** * * * * * * * *
48434734 GGTAAAAT-GGTAATTTTGTAATTCGAGGGTAAGATGGTAATTTTGTAAATCGAG
1 GGT-ATTTCAGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTGTAAACCAAT
** * * *
48434788 GGTAAAAT-GGTAATTCTATAAATCAAGGGTAAAATGGTAATT
1 GGT-ATTTCAGTAATTTTATAAATCGAGGGTAAAATGGTAATT
48434830 TTATAAATCG
Statistics
Matches: 126, Mismatches: 23, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
54 124 0.98
55 2 0.02
ACGTcount: A:0.33, C:0.05, G:0.24, T:0.38
Consensus pattern (54 bp):
GGTATTTCAGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTGTAAACCAAT
Found at i:48434710 original size:27 final size:27
Alignment explanation
Indices: 48434689--48434883 Score: 284
Period size: 27 Copynumber: 7.2 Consensus size: 27
48434679 TGGTATTTCA
48434689 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAATG
*
48434716 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAATG
* *
48434743 GTAATTTTGTAATTCGAGGGTAAGATG
1 GTAATTTTGTAAATCGAGGGTAAAATG
48434770 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAATG
* * *
48434797 GTAATTCTATAAATCAAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAATG
*
48434824 GTAATTTTATAAATCGAGGGTAAAA-G
1 GTAATTTTGTAAATCGAGGGTAAAATG
* * *
48434850 GATAATTCTGCAAATCGAGCGTAAAATG
1 G-TAATTTTGTAAATCGAGGGTAAAATG
48434878 GTAATT
1 GTAATT
48434884 CTATCTTACA
Statistics
Matches: 151, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
26 2 0.01
27 147 0.97
28 2 0.01
ACGTcount: A:0.38, C:0.06, G:0.24, T:0.32
Consensus pattern (27 bp):
GTAATTTTGTAAATCGAGGGTAAAATG
Found at i:48434720 original size:81 final size:81
Alignment explanation
Indices: 48434660--48434887 Score: 273
Period size: 81 Copynumber: 2.8 Consensus size: 81
48434650 GAGGGTATTT
* **
48434660 TGGTAATTTTGTAAACCAATGGT-ATTTCAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCT
1 TGGTAATTTTGTAAACCAAGGGTAAGAT-AGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCT
*
48434724 GTAAATCGAGGGTAAAA
65 ATAAATCGAGGGTAAAA
** * *
48434741 TGGTAATTTTGTAATTCGAGGGTAAGATGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTA
1 TGGTAATTTTGTAAACCAAGGGTAAGATAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTA
*
48434806 TAAATCAAGGGTAAAA
66 TAAATCGAGGGTAAAA
* * * * * *
48434822 TGGTAATTTTATAAATCGAGGGTAA-A-AGGATAATTCTGCAAATCGAGCGTAAAATGGTAATTC
1 TGGTAATTTTGTAAACCAAGGGTAAGATA-G-TAATTTTGTAAATCGAGGGTAAAATGGTAATTC
48434885 TAT
64 TAT
48434888 CTTACAGGAG
Statistics
Matches: 129, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
80 2 0.02
81 125 0.97
82 2 0.02
ACGTcount: A:0.37, C:0.07, G:0.23, T:0.33
Consensus pattern (81 bp):
TGGTAATTTTGTAAACCAAGGGTAAGATAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTA
TAAATCGAGGGTAAAA
Found at i:48434927 original size:27 final size:27
Alignment explanation
Indices: 48434897--48435046 Score: 158
Period size: 27 Copynumber: 5.6 Consensus size: 27
48434887 TCTTACAGGA
48434897 GTATTTTAGTAATTTTACAAATCGAGG
1 GTATTTTAGTAATTTTACAAATCGAGG
** * *
48434924 GTATTCCAGAAATTTTGCAAA-CTGAGG
1 GTATTTTAGTAATTTTACAAATC-GAGG
*
48434951 GTATTTTGGTAATTTTACAAATCGAGG
1 GTATTTTAGTAATTTTACAAATCGAGG
* ** * *
48434978 ATATTTGGGTAATTTTATAAATCGGGG
1 GTATTTTAGTAATTTTACAAATCGAGG
* * *
48435005 GTACTTTGGTAATTTTACAAGTCGAGG
1 GTATTTTAGTAATTTTACAAATCGAGG
*
48435032 GTATTTCAGTAATTT
1 GTATTTTAGTAATTT
48435047 GGTAAACTAA
Statistics
Matches: 99, Mismatches: 22, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
26 1 0.01
27 97 0.98
28 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (27 bp):
GTATTTTAGTAATTTTACAAATCGAGG
Found at i:48434955 original size:54 final size:54
Alignment explanation
Indices: 48434897--48435046 Score: 185
Period size: 54 Copynumber: 2.8 Consensus size: 54
48434887 TCTTACAGGA
* * * *
48434897 GTATTTTAGTAATTTTACAAATCGAGGGTATTCCAGAAATTTTGCAAA-CTGAGG
1 GTATTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATC-GAGG
* ** * *
48434951 GTATTTTGGTAATTTTACAAATCGAGGATATTTGGGTAATTTTATAAATCGGGG
1 GTATTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGG
* *
48435005 GTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAGTAATTT
1 GTATTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTT
48435047 GGTAAACTAA
Statistics
Matches: 81, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
54 80 0.99
55 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (54 bp):
GTATTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGG
Found at i:48440158 original size:21 final size:21
Alignment explanation
Indices: 48440130--48440170 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
48440120 CAAAACTTGT
48440130 ATAACTATCATCAAA-CATTC
1 ATAACTATCATCAAATCATTC
48440150 ATAACCTATCATCAAATCATT
1 ATAA-CTATCATCAAATCATT
48440171 AATATACATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 4 0.21
21 11 0.58
22 4 0.21
ACGTcount: A:0.44, C:0.24, G:0.00, T:0.32
Consensus pattern (21 bp):
ATAACTATCATCAAATCATTC
Found at i:48440801 original size:16 final size:16
Alignment explanation
Indices: 48440780--48440814 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
48440770 GATGGTATGT
48440780 TGTGCATGTCGCATGA
1 TGTGCATGTCGCATGA
48440796 TGTGCATGTCGCATGA
1 TGTGCATGTCGCATGA
48440812 TGT
1 TGT
48440815 AGGCTTAAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.17, C:0.17, G:0.31, T:0.34
Consensus pattern (16 bp):
TGTGCATGTCGCATGA
Found at i:48443320 original size:45 final size:45
Alignment explanation
Indices: 48443269--48443355 Score: 147
Period size: 45 Copynumber: 1.9 Consensus size: 45
48443259 CCAAAGCATG
*
48443269 TGTCACATATATCATGAACTCGGACCACAACTCAACGAGTTCGGA
1 TGTCACATATATCATGAACTCAGACCACAACTCAACGAGTTCGGA
* *
48443314 TGTCACATATATCATGAACTCAGACTACAACTCAATGAGTTC
1 TGTCACATATATCATGAACTCAGACCACAACTCAACGAGTTC
48443356 AGATTACATA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.25
Consensus pattern (45 bp):
TGTCACATATATCATGAACTCAGACCACAACTCAACGAGTTCGGA
Found at i:48445229 original size:40 final size:40
Alignment explanation
Indices: 48445192--48445415 Score: 242
Period size: 40 Copynumber: 5.6 Consensus size: 40
48445182 GCTACTCGTT
*
48445192 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
48445232 CAAATGCCTTCAGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
48445272 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* ** *
48445312 CCAATGCCTTCGGG-CTTAGCCC-GAAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * * *
48445351 CAAATGCCTT-AGGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
*
48445392 CAAA-GCCTTCGAGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
48445416 ACATCATTCG
Statistics
Matches: 154, Mismatches: 22, Indels: 16
0.80 0.11 0.08
Matches are distributed among these distances:
38 3 0.02
39 27 0.18
40 109 0.71
41 15 0.10
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:48445370 original size:119 final size:120
Alignment explanation
Indices: 48445194--48445416 Score: 301
Period size: 119 Copynumber: 1.9 Consensus size: 120
48445184 TACTCGTTCA
** *
48445194 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCAGGACTTAGCCCGGTT
1 AATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATGCCTTCAGGACTTAGCCCGGAT
*
48445259 ATAGTAACTT-GCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGAGACTTAACCCGGATTTAGTAACTCGCACC
* * *
48445314 AATGCCTTCGGG-CTTAGCCCGAA-ATTAGTATCTCGCACAAATGCCTT-AGGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGAATA-TAGTAACTCGCACAAATGCCTTCAGGA-CTTAGCCCGG
* * *
48445376 ATATGGTCACTTAGCACAAAGCCTTCGAGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGAGACTTAACCCGGA
48445417 CATCATTCGA
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
118 5 0.06
119 66 0.73
120 19 0.21
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATGCCTTCAGGACTTAGCCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGAGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:48453303 original size:40 final size:40
Alignment explanation
Indices: 48453020--48453303 Score: 344
Period size: 40 Copynumber: 7.1 Consensus size: 40
48453010 CGGAGTTTAA
** *
48453020 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
48453060 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
48453100 CCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
48453140 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
48453180 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
48453219 CCGGA-ATTAGTATCTCGCACAAATGCCTT-AGGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * * *
48453259 CCGGATATGGTCACTTAGCACAAA-GCCTTCGAGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
48453299 CCGGA
1 CCGGA
48453304 CATCATTCGA
Statistics
Matches: 214, Mismatches: 23, Indels: 14
0.85 0.09 0.06
Matches are distributed among these distances:
38 2 0.01
39 31 0.14
40 170 0.79
41 11 0.05
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:48461379 original size:40 final size:40
Alignment explanation
Indices: 48461281--48461583 Score: 423
Period size: 40 Copynumber: 7.6 Consensus size: 40
48461271 TCCTCGTTCA
* * * * *
48461281 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
48461320 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
48461360 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
48461400 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
48461440 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
48461480 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
** * * * *
48461520 AATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
48461560 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
48461584 CAGCATTCAA
Statistics
Matches: 245, Mismatches: 15, Indels: 7
0.92 0.06 0.03
Matches are distributed among these distances:
39 37 0.15
40 200 0.82
41 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:48467529 original size:40 final size:40
Alignment explanation
Indices: 48467431--48467693 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
48467421 TCCTCGTTCA
* * * * *
48467431 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
48467470 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
48467510 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
48467550 AATGCCTTCGGGACTTAACCTGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
48467590 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
48467630 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
48467670 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
48467694 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 37 0.19
40 153 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:48475464 original size:40 final size:40
Alignment explanation
Indices: 48475381--48475643 Score: 309
Period size: 40 Copynumber: 6.6 Consensus size: 40
48475371 TCCTCGTTCA
* * * *
48475381 AATGCCTTCGGGACATAGCCC-GATTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGA-TTTAATAACTCGCACG
* *
48475420 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
48475460 AATGCCTTCGGGACTTAACCCTGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
48475500 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
48475540 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
48475580 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
48475620 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
48475644 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 21, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
39 35 0.18
40 155 0.78
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:48477879 original size:27 final size:28
Alignment explanation
Indices: 48477829--48477900 Score: 74
Period size: 27 Copynumber: 2.6 Consensus size: 28
48477819 AAGTCTACAT
* *
48477829 ACATGCATATGGCCCACTAAGCCC-ATC
1 ACATTCATATGGCCCACTAAGCCCAACC
* * * *
48477856 TCATTCATATGGCCTATTATGCCCAAACC
1 ACATTCATATGGCCCACTAAGCCC-AACC
48477885 ACATTCATATGGCCCA
1 ACATTCATATGGCCCA
48477901 TCGGCCCCAA
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
27 19 0.54
29 16 0.46
ACGTcount: A:0.29, C:0.33, G:0.12, T:0.25
Consensus pattern (28 bp):
ACATTCATATGGCCCACTAAGCCCAACC
Found at i:48477916 original size:28 final size:29
Alignment explanation
Indices: 48477857--48477921 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 29
48477847 AAGCCCATCT
* *
48477857 CATTCATATGGCCTATTATGCCCAAACCA
1 CATTCATATGGCCCATTAGGCCCAAACCA
* * *
48477886 CATTCATATGGCCCA-TCGGCCCCAATCA
1 CATTCATATGGCCCATTAGGCCCAAACCA
48477914 CATTCATA
1 CATTCATA
48477922 GTCATGCAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
28 17 0.55
29 14 0.45
ACGTcount: A:0.29, C:0.34, G:0.11, T:0.26
Consensus pattern (29 bp):
CATTCATATGGCCCATTAGGCCCAAACCA
Found at i:48481593 original size:27 final size:26
Alignment explanation
Indices: 48481563--48481621 Score: 75
Period size: 26 Copynumber: 2.2 Consensus size: 26
48481553 ATTTACTAAA
48481563 ATACCCCTACGTATG-AAAATTACCATT
1 ATACCCCTA-G-ATGCAAAATTACCATT
* *
48481590 ATACACCTAGGTGCAAAATTACCATT
1 ATACCCCTAGATGCAAAATTACCATT
48481616 ATACCC
1 ATACCC
48481622 TTAGGGTTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 2 0.07
26 18 0.64
27 8 0.29
ACGTcount: A:0.37, C:0.27, G:0.08, T:0.27
Consensus pattern (26 bp):
ATACCCCTAGATGCAAAATTACCATT
Found at i:48481796 original size:27 final size:27
Alignment explanation
Indices: 48481730--48481808 Score: 104
Period size: 27 Copynumber: 2.9 Consensus size: 27
48481720 GAGGAAGCAT
*
48481730 TCTGGTGGCTCTGCCACAAATATCTGTT
1 TCTGGTGGCTCTGCCAC-AATATCTGTA
**
48481758 TCTATTGGCTCTGCCACAATATCTGTA
1 TCTGGTGGCTCTGCCACAATATCTGTA
* *
48481785 TCTGGTGACTCTGTCACAATATCT
1 TCTGGTGGCTCTGCCACAATATCT
48481809 ATTCTGGAAG
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
27 29 0.66
28 15 0.34
ACGTcount: A:0.20, C:0.25, G:0.18, T:0.37
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAATATCTGTA
Found at i:48485415 original size:28 final size:28
Alignment explanation
Indices: 48485344--48485448 Score: 128
Period size: 27 Copynumber: 3.9 Consensus size: 28
48485334 AAGGAAACGT
*
48485344 TCTGGTGGCTTTGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCACAAATATCTGTA
* *
48485371 TCTGGTGGCTCTACCACAAATATCTGTT
1 TCTGGTGGCTCTGCCACAAATATCTGTA
*
48485399 TCTGCTGGCTCTGCCAC-AATATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTGTA
* *
48485426 TCTGGT-ACTCTGTCAC-AATATCT
1 TCTGGTGGCTCTGCCACAAATATCT
48485449 ATTCTGGCAG
Statistics
Matches: 68, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
26 15 0.22
27 38 0.56
28 15 0.22
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.35
Consensus pattern (28 bp):
TCTGGTGGCTCTGCCACAAATATCTGTA
Found at i:48490342 original size:40 final size:40
Alignment explanation
Indices: 48490284--48490528 Score: 361
Period size: 40 Copynumber: 6.2 Consensus size: 40
48490274 AAACCAAGTA
* * *
48490284 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
48490323 CCTCCGGGACTTAGCCCGGATATAGTAGCTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
48490363 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
48490403 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
48490443 CCTTCGGGACTTAGCCCGGATATAGTAAATCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
48490483 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
48490523 CCTTCG
1 CCTTCG
48490529 TTATCATCCG
Statistics
Matches: 188, Mismatches: 15, Indels: 5
0.90 0.07 0.02
Matches are distributed among these distances:
39 13 0.07
40 175 0.93
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:48492771 original size:16 final size:16
Alignment explanation
Indices: 48492750--48492780 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
48492740 CCAAACTTCT
*
48492750 GGCTTTTCGGCATTTC
1 GGCTTTTCGACATTTC
48492766 GGCTTTTCGACATTT
1 GGCTTTTCGACATTT
48492781 TGAGATTTGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.23, G:0.23, T:0.45
Consensus pattern (16 bp):
GGCTTTTCGACATTTC
Found at i:48496445 original size:29 final size:29
Alignment explanation
Indices: 48496412--48496476 Score: 103
Period size: 29 Copynumber: 2.2 Consensus size: 29
48496402 TGTGAACAGG
*
48496412 CCGTGTGCCTCACATGGCATTAGACAAGC
1 CCGTGTGCCTCACATGGAATTAGACAAGC
*
48496441 CCGTGTGCCTCACATGGAATTAGACACGC
1 CCGTGTGCCTCACATGGAATTAGACAAGC
*
48496470 CTGTGTG
1 CCGTGTG
48496477 TCTAGCCCGT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.22, C:0.29, G:0.26, T:0.23
Consensus pattern (29 bp):
CCGTGTGCCTCACATGGAATTAGACAAGC
Found at i:48497805 original size:42 final size:43
Alignment explanation
Indices: 48497700--48497861 Score: 122
Period size: 43 Copynumber: 3.8 Consensus size: 43
48497690 AAATGCCAAC
* * *
48497700 GTCCCAGACGTGGTCTTACATGTAATCAAATATCGAGGCCACTA
1 GTCCCAGACATGGTCTTACACGAAATCAAATATCGAGGCCAC-A
* * * *
48497744 -TCCTAGACAGGGTCTTACACGAAATCAAATA-CGATGTCGA-A
1 GTCCCAGACATGGTCTTACACGAAATCAAATATCGA-GGCCACA
* *
48497785 GTCCCAGACATGGTCTTACACATAAATCTCAAAT-T-GATGCCATC-
1 GTCCCAGACATGGTCTTACAC-GAAA--TCAAATATCGAGGCCA-CA
* *
48497829 GTCCCAGACGT-GTCTTACACGAAATCACATATC
1 GTCCCAGACATGGTCTTACACGAAATCAAATATC
48497862 AAAAATCCTA
Statistics
Matches: 92, Mismatches: 16, Indels: 22
0.71 0.12 0.17
Matches are distributed among these distances:
40 5 0.05
41 2 0.02
42 24 0.26
43 43 0.47
44 12 0.13
45 6 0.07
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACACGAAATCAAATATCGAGGCCACA
Found at i:48501116 original size:28 final size:27
Alignment explanation
Indices: 48501083--48501186 Score: 111
Period size: 28 Copynumber: 3.7 Consensus size: 27
48501073 TATATATAGC
48501083 CCATTAGGCCCAATCTC-TTCAATATGG
1 CCATTAGGCCCAATCTCATTC-ATATGG
* * *
48501110 ACCATTAGGCCTAATCTCATTTATGTGG
1 -CCATTAGGCCCAATCTCATTCATATGG
* *
48501138 CCCATTAGGCCCAAATCACATTCATACGG
1 -CCATTAGGCCC-AATCTCATTCATATGG
*
48501167 CCATTAGGCCCAATCACATT
1 CCATTAGGCCCAATCTCATT
48501187 TACAATTATG
Statistics
Matches: 65, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
27 9 0.14
28 42 0.65
29 14 0.22
ACGTcount: A:0.28, C:0.30, G:0.14, T:0.28
Consensus pattern (27 bp):
CCATTAGGCCCAATCTCATTCATATGG
Found at i:48501147 original size:56 final size:56
Alignment explanation
Indices: 48501081--48501188 Score: 148
Period size: 56 Copynumber: 1.9 Consensus size: 56
48501071 CCTATATATA
* * * *
48501081 GCCCATTAGGCCC-AATCTC-TTCAATATGGACCATTAGGCCTAATCTCATTTATGTG
1 GCCCATTAGGCCCAAATCACATTC-ATACGG-CCATTAGGCCCAATCACATTTATGTG
48501137 GCCCATTAGGCCCAAATCACATTCATACGGCCATTAGGCCCAATCACATTTA
1 GCCCATTAGGCCCAAATCACATTCATACGGCCATTAGGCCCAATCACATTTA
48501189 CAATTATGCT
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
56 33 0.72
57 10 0.22
58 3 0.07
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.28
Consensus pattern (56 bp):
GCCCATTAGGCCCAAATCACATTCATACGGCCATTAGGCCCAATCACATTTATGTG
Found at i:48501423 original size:16 final size:16
Alignment explanation
Indices: 48501402--48501455 Score: 74
Period size: 16 Copynumber: 3.4 Consensus size: 16
48501392 GTAGCCAAAC
* *
48501402 TTTCGGCTTTTCAGCA
1 TTTCGGCATTTCAGCT
48501418 TTTCGGCATTTC-GACT
1 TTTCGGCATTTCAG-CT
48501434 TTTCGGCATTTCAGCT
1 TTTCGGCATTTCAGCT
48501450 TTTCGG
1 TTTCGG
48501456 GATCTGCTGA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
15 1 0.03
16 32 0.94
17 1 0.03
ACGTcount: A:0.11, C:0.24, G:0.20, T:0.44
Consensus pattern (16 bp):
TTTCGGCATTTCAGCT
Found at i:48501435 original size:24 final size:24
Alignment explanation
Indices: 48501402--48501454 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
48501392 GTAGCCAAAC
* *
48501402 TTTCGGCTTTTCAGCATTTCGGCA
1 TTTCGACTTTTCAGCATTTCAGCA
* *
48501426 TTTCGACTTTTCGGCATTTCAGCT
1 TTTCGACTTTTCAGCATTTCAGCA
48501450 TTTCG
1 TTTCG
48501455 GGATCTGCTG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.11, C:0.25, G:0.19, T:0.45
Consensus pattern (24 bp):
TTTCGACTTTTCAGCATTTCAGCA
Found at i:48506839 original size:46 final size:46
Alignment explanation
Indices: 48506786--48506923 Score: 204
Period size: 46 Copynumber: 3.0 Consensus size: 46
48506776 TATATATACA
* * * *
48506786 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
48506832 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
*
48506878 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGG-CTTTACCACATAT
48506924 ATACATGTTC
Statistics
Matches: 82, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
46 70 0.85
47 12 0.15
ACGTcount: A:0.25, C:0.31, G:0.09, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:48506979 original size:47 final size:47
Alignment explanation
Indices: 48506896--48507279 Score: 507
Period size: 47 Copynumber: 8.1 Consensus size: 47
48506886 ACACATTTCG
* * * **
48506896 CATTAGCCATTCGGCCTTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCC-TTATCACACATACGCATGTTCACATTCATCA
* * *
48506944 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
48506991 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* *
48507038 CATTGGCCATTCGGCCTTATCGCACATACGCGTGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
48507085 CATTGGCCATTCGGCCTTATCGCACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
48507132 CATTGGCCATTCGGCCTTATCACACATACGCGTGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ** *
48507179 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C--ACATACGCATGTTCACATTCATCA
** * * ** **
48507230 CATTTTCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
48507277 CAT
1 CAT
48507280 AAAATCCGAA
Statistics
Matches: 310, Mismatches: 22, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
47 255 0.82
48 15 0.05
49 2 0.01
51 38 0.12
ACGTcount: A:0.25, C:0.30, G:0.12, T:0.32
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:48511025 original size:57 final size:57
Alignment explanation
Indices: 48510934--48511065 Score: 144
Period size: 57 Copynumber: 2.3 Consensus size: 57
48510924 GAAACACACT
* * *
48510934 TCGCATACACAGTGCC-C-ACTAACTGATTTTGCACAAATAGCGCTCGATTAAAGAAC
1 TCGCACACACAGTGCCTCAACT-ACTGATCTGGCACAAATAGCGCTCGATTAAAGAAC
* * * **
48510990 TCGCACAC-CTAGTGCCTCAACTACTGATCTGGCACACATAGTGCTCGGTTGGAGAAC
1 TCGCACACAC-AGTGCCTCAACTACTGATCTGGCACAAATAGCGCTCGATTAAAGAAC
*
48511047 TTGCACACACAGTGCCTCA
1 TCGCACACACAGTGCCTCA
48511066 TAATTCTAGC
Statistics
Matches: 63, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
55 1 0.02
56 13 0.21
57 45 0.71
58 4 0.06
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.23
Consensus pattern (57 bp):
TCGCACACACAGTGCCTCAACTACTGATCTGGCACAAATAGCGCTCGATTAAAGAAC
Found at i:48511141 original size:40 final size:40
Alignment explanation
Indices: 48511097--48511427 Score: 500
Period size: 40 Copynumber: 8.3 Consensus size: 40
48511087 CGAGGTTTAA
* *
48511097 CCCGGATATATCACCAGCACGATTGCTCTTCGAAACTTAG
1 CCCGGATATATCACCAGCACGAATGCTCTTCGGAACTTAG
* * *
48511137 CCCGGACATATTACCAGCACAAATGCTCTTCGGAACTTAG
1 CCCGGATATATCACCAGCACGAATGCTCTTCGGAACTTAG
*
48511177 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
1 CCCGGATATATCACCAGCACGAATGCTCTTCGGAACTTAG
* * * *
48511217 CCCGGACATATTACCAGCACGAATGCTTTTCAGAACTTAG
1 CCCGGATATATCACCAGCACGAATGCTCTTCGGAACTTAG
*
48511257 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
1 CCCGGATATATCACCAGCACGAATGCTCTTCGGAACTTAG
* * *
48511297 CCCGGACATATTACCAGCACGAATGCTCTTCGAAACTTAG
1 CCCGGATATATCACCAGCACGAATGCTCTTCGGAACTTAG
*
48511337 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
1 CCCGGATATATCACCAGCACGAATGCTCTTCGGAACTTAG
* * *
48511377 CCCGGACATATTACCAGCACGAATGCTCTTCGGGACTTAG
1 CCCGGATATATCACCAGCACGAATGCTCTTCGGAACTTAG
48511417 CCCGGATATAT
1 CCCGGATATAT
48511428 ATAACTCTCA
Statistics
Matches: 259, Mismatches: 32, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 259 1.00
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (40 bp):
CCCGGATATATCACCAGCACGAATGCTCTTCGGAACTTAG
Found at i:48511217 original size:80 final size:80
Alignment explanation
Indices: 48511097--48511427 Score: 590
Period size: 80 Copynumber: 4.1 Consensus size: 80
48511087 CGAGGTTTAA
* * * *
48511097 CCCGGATATATCACCAGCACGATTGCTCTTCGAAACTTAGCCCGGACATATTACCAGCACAAATG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGACATATTACCAGCACGAATG
48511162 CTCTTCGGAACTTAG
66 CTCTTCGGAACTTAG
48511177 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGACATATTACCAGCACGAATG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGACATATTACCAGCACGAATG
* *
48511242 CTTTTCAGAACTTAG
66 CTCTTCGGAACTTAG
48511257 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGACATATTACCAGCACGAATG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGACATATTACCAGCACGAATG
*
48511322 CTCTTCGAAACTTAG
66 CTCTTCGGAACTTAG
48511337 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGACATATTACCAGCACGAATG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGACATATTACCAGCACGAATG
*
48511402 CTCTTCGGGACTTAG
66 CTCTTCGGAACTTAG
48511417 CCCGGATATAT
1 CCCGGATATAT
48511428 ATAACTCTCA
Statistics
Matches: 240, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
80 240 1.00
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (80 bp):
CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGACATATTACCAGCACGAATG
CTCTTCGGAACTTAG
Found at i:48512991 original size:46 final size:46
Alignment explanation
Indices: 48512938--48513075 Score: 204
Period size: 46 Copynumber: 3.0 Consensus size: 46
48512928 TATATATACA
* * * *
48512938 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
48512984 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
*
48513030 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGG-CTTTACCACATAT
48513076 ATACATGTTC
Statistics
Matches: 82, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
46 70 0.85
47 12 0.15
ACGTcount: A:0.25, C:0.31, G:0.09, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:48513131 original size:47 final size:47
Alignment explanation
Indices: 48513048--48513477 Score: 603
Period size: 47 Copynumber: 9.1 Consensus size: 47
48513038 ACACATTTCG
* * * **
48513048 CATTAGCCATTCGGCCTTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCC-TTATCACACATACGCATGTTCACATTCATCA
* * *
48513096 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
48513143 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* *
48513190 CATTGGCCATTCGGCCTTATCACACATGCGCATGTTCACATACATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* *
48513237 CATTGGCCATTCGGTCTTATCACACATACGCGTGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
48513284 CATTGGCCATTCGGCCTTATCACACATACGCGTGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
48513331 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ** *
48513378 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C--ACATACGCATGTTCACATTCATCA
* * * *
48513429 CATTTGCCATTCGGCCTTATCTCATATATCACA--TTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATA-CGCATGTTCACATTCATCA
48513475 CAT
1 CAT
48513478 AAAATCCTAA
Statistics
Matches: 355, Mismatches: 22, Indels: 12
0.91 0.06 0.03
Matches are distributed among these distances:
46 16 0.05
47 279 0.79
48 18 0.05
49 2 0.01
51 40 0.11
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:48517362 original size:40 final size:40
Alignment explanation
Indices: 48517279--48517566 Score: 386
Period size: 40 Copynumber: 7.3 Consensus size: 40
48517269 TGAGGTTTAA
*
48517279 CCCGGATATATCACTAGCACGATTGCTCTT-GGAACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
* * *
48517318 CCCGGACATATTACCAGCACGAATGCTCTTCGGAACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
* *
48517358 CCCGGATATATCACTAGCACGAATGCTCTTTGGAATTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
* *
48517398 CTCGGATATATCACTAGCACGAATGCTCTTCGAAACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
* * * *
48517438 CCTGGACATATTC-C-AGTACGAATGCTCTTCAGAACTTAG
1 CCCGGATATA-TCACTAGCACGAATGCTCTTCGGAACTTAG
*
48517477 CCCAGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
* * * *
48517517 CCCGGACATATTACCAG-ACGAATGCTCTTCGGGACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
48517556 CCCGGATATAT
1 CCCGGATATAT
48517567 ATAACCACAA
Statistics
Matches: 215, Mismatches: 30, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
38 2 0.01
39 87 0.40
40 124 0.58
41 2 0.01
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (40 bp):
CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
Found at i:48517463 original size:119 final size:120
Alignment explanation
Indices: 48517279--48517566 Score: 429
Period size: 119 Copynumber: 2.4 Consensus size: 120
48517269 TGAGGTTTAA
*
48517279 CCCGGATATATCACTAGCACGATTGCTCTT-GGAACTTAGCCCGGACATATTACCAGCACGAATG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGACATATTACCAGCACGAATG
* * * *
48517343 CTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAATGCTCTTTGGAATTTAG
66 CTCTTCAGAACTTAGCCCAGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
* * * *
48517398 CTCGGATATATCACTAGCACGAATGCTCTTCGAAACTTAGCCTGGACATATT-CCAGTACGAATG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGACATATTACCAGCACGAATG
48517462 CTCTTCAGAACTTAGCCCAGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
66 CTCTTCAGAACTTAGCCCAGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
* * * * *
48517517 CCCGGACATATTACCAG-ACGAATGCTCTTCGGGACTTAGCCCGGATATAT
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGACATAT
48517567 ATAACCACAA
Statistics
Matches: 151, Mismatches: 17, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
118 29 0.19
119 103 0.68
120 19 0.13
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (120 bp):
CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGACATATTACCAGCACGAATG
CTCTTCAGAACTTAGCCCAGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
Found at i:48517489 original size:79 final size:78
Alignment explanation
Indices: 48517297--48517566 Score: 364
Period size: 79 Copynumber: 3.4 Consensus size: 78
48517287 TATCACTAGC
* * * *
48517297 ACGATTGCTCTT-GGAACTTAGCCCGGACATATTACCAGCACGAATGCTCTTCGGAACTTAGCCC
1 ACGAATGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCC
*
48517361 GGATATA-TCACTAG
66 GGACATATTC-C-AG
* * * *
48517375 CACGAATGCTCTTTGGAATTTAGCTCGGATATATCACTAGCACGAATGCTCTTCGAAACTTAGCC
1 -ACGAATGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCC
*
48517440 TGGACATATTCCAG
65 CGGACATATTCCAG
* *
48517454 TACGAATGCTCTTCAGAACTTAGCCCAGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCC
1 -ACGAATGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCC
48517519 CGGACATATTACCAG
65 CGGACATATT-CCAG
*
48517534 ACGAATGCTCTTCGGGACTTAGCCCGGATATAT
1 ACGAATGCTCTTCGGAACTTAGCCCGGATATAT
48517567 ATAACCACAA
Statistics
Matches: 168, Mismatches: 20, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
79 110 0.65
80 56 0.33
81 2 0.01
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.27
Consensus pattern (78 bp):
ACGAATGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCC
GGACATATTCCAG
Found at i:48519115 original size:46 final size:46
Alignment explanation
Indices: 48519062--48519196 Score: 184
Period size: 46 Copynumber: 3.0 Consensus size: 46
48519052 TATATATACA
* * * *
48519062 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
48519108 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
48519154 TATCTCATACACATTTCGCATTAGCCA-TC-GCCTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
48519197 ATACATGTTC
Statistics
Matches: 79, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
44 12 0.15
45 2 0.03
46 65 0.82
ACGTcount: A:0.26, C:0.32, G:0.08, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:48519235 original size:47 final size:47
Alignment explanation
Indices: 48519200--48519596 Score: 586
Period size: 47 Copynumber: 8.4 Consensus size: 47
48519190 CACATATATA
* * *
48519200 CATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATG
1 CATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACG
48519247 CATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACG
1 CATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACG
48519294 CATGTTCACATTCATCACATTGGCCATTC-GCCTTATCACACAT-CG
1 CATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACG
* *
48519339 CATGTTCACATACATCACATTGGCCATTCGGTCTTATCACACATACG
1 CATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACG
*
48519386 CGTGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACG
1 CATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACG
*
48519433 CGTGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACG
1 CATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACG
* **
48519480 CATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACGCATATATATA
1 CATGTTCACATTCATCACATTGGCCATTCGGCCTTATCA--C--ACATACG
* * * * *
48519531 CAGGTTCACATTCATCACATTTGCCATTCGGCCTTATCTCATATATCA
1 CATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATA-CG
48519579 CA--TTCACATTCATCACAT
1 CATGTTCACATTCATCACAT
48519597 AAATCCTAAA
Statistics
Matches: 327, Mismatches: 16, Indels: 15
0.91 0.04 0.04
Matches are distributed among these distances:
45 30 0.09
46 43 0.13
47 209 0.64
48 3 0.01
49 2 0.01
51 40 0.12
ACGTcount: A:0.25, C:0.30, G:0.12, T:0.32
Consensus pattern (47 bp):
CATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACG
Found at i:48523321 original size:57 final size:57
Alignment explanation
Indices: 48523238--48523369 Score: 144
Period size: 57 Copynumber: 2.3 Consensus size: 57
48523228 GAAACACACT
* * *
48523238 TCGCATACACAATGCC-C-ACTGACTGATTTCGCACACATAGCGCTCGATTAAAGAAC
1 TCGCACACACAGTGCCTCAACT-ACTGATCTCGCACACATAGCGCTCGATTAAAGAAC
* * * **
48523294 TCGCACAC-CTAGTGCCTCAACTACTGATCTGGCACACATAGTGCTCGGTTGGAGAAC
1 TCGCACACAC-AGTGCCTCAACTACTGATCTCGCACACATAGCGCTCGATTAAAGAAC
*
48523351 TTGCACACACAGTGCCTCA
1 TCGCACACACAGTGCCTCA
48523370 TAATTCTAGC
Statistics
Matches: 63, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
55 1 0.02
56 12 0.19
57 46 0.73
58 4 0.06
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.22
Consensus pattern (57 bp):
TCGCACACACAGTGCCTCAACTACTGATCTCGCACACATAGCGCTCGATTAAAGAAC
Found at i:48523445 original size:40 final size:40
Alignment explanation
Indices: 48523401--48523691 Score: 384
Period size: 40 Copynumber: 7.3 Consensus size: 40
48523391 TGAGGTTTAA
* *
48523401 CCCGGATATATCACTAGCACGATTGCTCTTTGGAACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
* * *
48523441 CCCGGACATATTACCAGCACGAATGCTCTTCGGAACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
* *
48523481 CCCGGATATATCACTAGCACGAATGCTCTTTGGAATTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
* *
48523521 CTCGGATATATCACTAGCACGAATGCTCTTCGAAACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
* * ** * * *
48523561 CCTGGACATATTTCCAGTACGAATGCTCTTCAGAACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
*
48523601 CCCAGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
* * * * *
48523641 CCCGGACATATTACCAGTACGAATGCTCTTCGGGACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
48523681 CCCGGATATAT
1 CCCGGATATAT
48523692 ATAACGCACA
Statistics
Matches: 213, Mismatches: 38, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 213 1.00
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.27
Consensus pattern (40 bp):
CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
Found at i:48523601 original size:120 final size:120
Alignment explanation
Indices: 48523401--48523691 Score: 429
Period size: 120 Copynumber: 2.4 Consensus size: 120
48523391 TGAGGTTTAA
* *
48523401 CCCGGATATATCACTAGCACGATTGCTCTTTGGAACTTAGCCCGGACATATTACCAGCACGAATG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGACATATTACCAGCACGAATG
* * * *
48523466 CTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAATGCTCTTTGGAATTTAG
66 CTCTTCAGAACTTAGCCCAGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
* * * * *
48523521 CTCGGATATATCACTAGCACGAATGCTCTTCGAAACTTAGCCTGGACATATTTCCAGTACGAATG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGACATATTACCAGCACGAATG
48523586 CTCTTCAGAACTTAGCCCAGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
66 CTCTTCAGAACTTAGCCCAGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
* * * * * *
48523641 CCCGGACATATTACCAGTACGAATGCTCTTCGGGACTTAGCCCGGATATAT
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGACATAT
48523692 ATAACGCACA
Statistics
Matches: 151, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
120 151 1.00
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.27
Consensus pattern (120 bp):
CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGACATATTACCAGCACGAATG
CTCTTCAGAACTTAGCCCAGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
Found at i:48525253 original size:46 final size:46
Alignment explanation
Indices: 48525200--48525336 Score: 184
Period size: 46 Copynumber: 3.0 Consensus size: 46
48525190 TATATATACA
* * *
48525200 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
* *
48525246 CATCTCATACACGTTTCACATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
* * * * *
48525292 TATCTCATACACATTTCGCATTAGCCAATCGACCTTACCACATAT
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATAT
48525337 ATACATGTTC
Statistics
Matches: 79, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.28, C:0.31, G:0.07, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
Found at i:48525383 original size:47 final size:47
Alignment explanation
Indices: 48525340--48525526 Score: 302
Period size: 47 Copynumber: 4.0 Consensus size: 47
48525330 CACATATATA
* * * *
48525340 CATGTTCACATTCATCACATTGGCCATTCAGCCTTATCTCATATATG
1 CATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACG
*
48525387 CATGTTCACATTCATCACATTGGCCATTCGGCATTATCACACATACG
1 CATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACG
48525434 CATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACG
1 CATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACG
* * *
48525481 CGTGTTCACATTCATCACATTGGCCATTCGACCTTATCAGACATAC
1 CATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAC
48525527 ATTGGCCATT
Statistics
Matches: 131, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 131 1.00
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (47 bp):
CATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACG
Found at i:48525534 original size:75 final size:75
Alignment explanation
Indices: 48525450--48525601 Score: 277
Period size: 75 Copynumber: 2.0 Consensus size: 75
48525440 CACATTCATC
48525450 ACATTGGCCATTCGGCCTTATCACACATACGCGTGTTCACATTCATCACATTGGCCATTCGACCT
1 ACATTGGCCATTCGGCCTTATCACACATACGCGTGTTCACATTCATCACATTGGCCATTCGACCT
*
48525515 TATCAGACAT
66 TATCACACAT
* *
48525525 ACATTGGCCATTCGGCCTTATCACACATACGCGTGTTCACATTGATCACATTGGCCATTCGGCCT
1 ACATTGGCCATTCGGCCTTATCACACATACGCGTGTTCACATTCATCACATTGGCCATTCGACCT
48525590 TATCACACAT
66 TATCACACAT
48525600 AC
1 AC
48525602 GCGTGTTCAC
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
75 74 1.00
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.29
Consensus pattern (75 bp):
ACATTGGCCATTCGGCCTTATCACACATACGCGTGTTCACATTCATCACATTGGCCATTCGACCT
TATCACACAT
Found at i:48525537 original size:28 final size:28
Alignment explanation
Indices: 48525497--48525554 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 28
48525487 CACATTCATC
*
48525497 ACATTGGCCATTCGACCTTATCAGACAT
1 ACATTGGCCATTCGACCTTATCACACAT
*
48525525 ACATTGGCCATTCGGCCTTATCACACAT
1 ACATTGGCCATTCGACCTTATCACACAT
48525553 AC
1 AC
48525555 GCGTGTTCAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.28, C:0.31, G:0.14, T:0.28
Consensus pattern (28 bp):
ACATTGGCCATTCGACCTTATCACACAT
Found at i:48525546 original size:122 final size:122
Alignment explanation
Indices: 48525403--48525648 Score: 447
Period size: 122 Copynumber: 2.0 Consensus size: 122
48525393 CACATTCATC
48525403 ACATTGGCCATTCGGCATTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCT
1 ACATTGGCCATTCGGCATTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCT
*
48525468 TATCACACATACGCGTGTTCACATTCATCACATTGGCCATTCGACCTTATCAGACAT
66 TATCACACATACGCGTGTTCACATTCATCACATTGGCCATTCGACCTTATCACACAT
* * *
48525525 ACATTGGCCATTCGGCCTTATCACACATACGCGTGTTCACATTGATCACATTGGCCATTCGGCCT
1 ACATTGGCCATTCGGCATTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCT
*
48525590 TATCACACATACGCGTGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACAT
66 TATCACACATACGCGTGTTCACATTCATCACATTGGCCATTCGACCTTATCACACAT
48525647 AC
1 AC
48525649 GCATGTTCAC
Statistics
Matches: 119, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
122 119 1.00
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.29
Consensus pattern (122 bp):
ACATTGGCCATTCGGCATTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCT
TATCACACATACGCGTGTTCACATTCATCACATTGGCCATTCGACCTTATCACACAT
Found at i:48525577 original size:169 final size:169
Alignment explanation
Indices: 48525356--48525688 Score: 576
Period size: 169 Copynumber: 2.0 Consensus size: 169
48525346 CACATTCATC
* * *
48525356 ACATTGGCCATTCAGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCAT
1 ACATTGGCCATTCAGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCAT
*
48525421 TATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCGTGT
66 TATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGT
48525486 TCACATTCATCACATTGGCCATTCGACCTTATCAGACAT
131 TCACATTCATCACATTGGCCATTCGACCTTATCAGACAT
* * * *
48525525 ACATTGGCCATTCGGCCTTATCACACATACGCGTGTTCACATTGATCACATTGGCCATTCGGCCT
1 ACATTGGCCATTCAGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCAT
*
48525590 TATCACACATACGCGTGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGT
66 TATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGT
*
48525655 TCACATTCATCACATTGGCCATTCGGCCTTATCA
131 TCACATTCATCACATTGGCCATTCGACCTTATCA
48525689 CGCATATATA
Statistics
Matches: 154, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
169 154 1.00
ACGTcount: A:0.25, C:0.30, G:0.14, T:0.31
Consensus pattern (169 bp):
ACATTGGCCATTCAGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCAT
TATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGT
TCACATTCATCACATTGGCCATTCGACCTTATCAGACAT
Found at i:48525578 original size:47 final size:47
Alignment explanation
Indices: 48525525--48525738 Score: 322
Period size: 47 Copynumber: 4.5 Consensus size: 47
48525515 TATCAGACAT
*
48525525 ACATTGGCCATTCGGCCTTATCACACATACGCGTGTTCACATTGATC
1 ACATTGGCCATTCGGCCTTATCACACATACGCGTGTTCACATTCATC
48525572 ACATTGGCCATTCGGCCTTATCACACATACGCGTGTTCACATTCATC
1 ACATTGGCCATTCGGCCTTATCACACATACGCGTGTTCACATTCATC
*
48525619 ACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATC
1 ACATTGGCCATTCGGCCTTATCACACATACGCGTGTTCACATTCATC
* **
48525666 ACATTGGCCATTCGGCCTTATCACGCATATATATACAG-GTTCACATTCATC
1 ACATTGGCCATTCGGCCTTATCA--C--ACATACGC-GTGTTCACATTCATC
*
48525717 ACATTTGCCATTCGGCCTTATC
1 ACATTGGCCATTCGGCCTTATC
48525739 TCATATATAC
Statistics
Matches: 155, Mismatches: 7, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
47 115 0.74
49 1 0.01
51 39 0.25
ACGTcount: A:0.24, C:0.30, G:0.14, T:0.31
Consensus pattern (47 bp):
ACATTGGCCATTCGGCCTTATCACACATACGCGTGTTCACATTCATC
Found at i:48525630 original size:94 final size:96
Alignment explanation
Indices: 48525525--48525767 Score: 330
Period size: 94 Copynumber: 2.5 Consensus size: 96
48525515 TATCAGACAT
* *
48525525 ACATTGGCCATTCGGCCTTATCACACATACGCGTGTTCACATTGATCACATTGGCCATTCGGCCT
1 ACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCT
*
48525590 TATCA-C-ACATACGC-GTGTTCACATTCATC
66 TATCACCAACATACACAG-GTTCACATTCATC
48525619 ACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCT
1 ACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCT
* *
48525684 TATCACGCATATATATACAGGTTCACATTCATC
66 TATCAC-CA-ACATACACAGGTTCACATTCATC
* * * ** **
48525717 ACATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 ACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACAT
48525768 AAAATCCTAA
Statistics
Matches: 132, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
94 68 0.52
96 1 0.01
98 62 0.47
99 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.31
Consensus pattern (96 bp):
ACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCT
TATCACCAACATACACAGGTTCACATTCATC
Found at i:48525763 original size:47 final size:47
Alignment explanation
Indices: 48525525--48525767 Score: 279
Period size: 47 Copynumber: 5.1 Consensus size: 47
48525515 TATCAGACAT
* *** *
48525525 ACATTGGCCATTCGGCCTTATCACACATACGCGTGTTCACATTGATC
1 ACATTGGCCATTCGGCCTTATCACACATACACACATTCACATTCATC
* ***
48525572 ACATTGGCCATTCGGCCTTATCACACATACGCGTGTTCACATTCATC
1 ACATTGGCCATTCGGCCTTATCACACATACACACATTCACATTCATC
* **
48525619 ACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATC
1 ACATTGGCCATTCGGCCTTATCACACATACACACATTCACATTCATC
* * *
48525666 ACATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATC
1 ACATTGGCCATTCGGCCTTATCA--CACATACACACA--TTCACATTCATC
* * * *
48525717 ACATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTCATC
1 ACATTGGCCATTCGGCCTTATCACACATACACACATTCACATTCATC
48525764 ACAT
1 ACAT
48525768 AAAATCCTAA
Statistics
Matches: 181, Mismatches: 11, Indels: 8
0.90 0.05 0.04
Matches are distributed among these distances:
47 131 0.72
49 17 0.09
51 33 0.18
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.31
Consensus pattern (47 bp):
ACATTGGCCATTCGGCCTTATCACACATACACACATTCACATTCATC
Found at i:48531205 original size:27 final size:27
Alignment explanation
Indices: 48531175--48531352 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
48531165 ATATTGAGCC
* *
48531175 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
48531202 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
48531229 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
48531257 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
48531284 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
48531311 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
48531338 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
48531353 GTACAATTTA
Statistics
Matches: 129, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 104 0.81
28 25 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:48531314 original size:82 final size:81
Alignment explanation
Indices: 48531196--48531351 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
48531186 TGCTATATAA
* *
48531196 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
48531261 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
48531278 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
48531342 CACTTAGTGC
65 CACTTAGTGC
48531352 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:48534277 original size:41 final size:43
Alignment explanation
Indices: 48534184--48534308 Score: 150
Period size: 42 Copynumber: 2.9 Consensus size: 43
48534174 CAATGCCAAC
* *
48534184 GTCCCAGACATGGTCTTACATGTAATCAAATATCGATGCCATT
1 GTCCCAGACATGGTCTTACACGAAATCAAATATCGATGCCATT
48534227 GTCCCAGACA-GGTCTTACACGAAATCAAATAT-GATGCCGA-T
1 GTCCCAGACATGGTCTTACACGAAATCAAATATCGATGCC-ATT
* * *
48534268 GTCCTAGACATGGTCGTACACGTAAATCTCAA-ATCGATGCC
1 GTCCCAGACATGGTCTTACACG-AAATC-AAATATCGATGCC
48534309 CTATGCCATG
Statistics
Matches: 72, Mismatches: 5, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
41 16 0.22
42 31 0.43
43 17 0.24
44 8 0.11
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACACGAAATCAAATATCGATGCCATT
Found at i:48535681 original size:45 final size:45
Alignment explanation
Indices: 48535617--48535705 Score: 133
Period size: 45 Copynumber: 2.0 Consensus size: 45
48535607 AAAACATTTA
*
48535617 TCACATATATCACAAACTCAAACCACAACTTAATGAGTTCAGATG
1 TCACATATATCACAAACTCAAACCACAACTCAATGAGTTCAGATG
** * *
48535662 TCACATATATCATGAACTCAGACCACAACTCAATGAGTTTAGAT
1 TCACATATATCACAAACTCAAACCACAACTCAATGAGTTCAGAT
48535706 TACATAATTC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.40, C:0.24, G:0.10, T:0.26
Consensus pattern (45 bp):
TCACATATATCACAAACTCAAACCACAACTCAATGAGTTCAGATG
Found at i:48537193 original size:30 final size:30
Alignment explanation
Indices: 48537157--48537216 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
48537147 AGGGCCTATG
*
48537157 AGTTTTAGGGGTATTTTAAGAATTTTAACT
1 AGTTTTAGGAGTATTTTAAGAATTTTAACT
*
48537187 AGTTTTAGGAGTATTTTAGGAATTTTAACT
1 AGTTTTAGGAGTATTTTAAGAATTTTAACT
48537217 CTAGAGTGCT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.30, C:0.03, G:0.20, T:0.47
Consensus pattern (30 bp):
AGTTTTAGGAGTATTTTAAGAATTTTAACT
Found at i:48537371 original size:30 final size:30
Alignment explanation
Indices: 48537335--48537394 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
48537325 CATTCCCAAG
48537335 TTTGTTTTCACGATAGGTTTTCTCTAAACA
1 TTTGTTTTCACGATAGGTTTTCTCTAAACA
48537365 TTTGTTTTCACGATAGGTTTTCTCTAAACA
1 TTTGTTTTCACGATAGGTTTTCTCTAAACA
48537395 CCACACTTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.23, C:0.17, G:0.13, T:0.47
Consensus pattern (30 bp):
TTTGTTTTCACGATAGGTTTTCTCTAAACA
Found at i:48540465 original size:40 final size:40
Alignment explanation
Indices: 48540417--48540717 Score: 424
Period size: 40 Copynumber: 7.5 Consensus size: 40
48540407 CTACTTGCTC
* * * *
48540417 AATGCCTTCGAGACATAGCCCGGATATAGTAACTCGCACC
1 AATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACA
* *
48540457 AATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACA
* * *
48540497 AATGCCTTTGGGACTTAGCCCGGATGTAATAACTCACACA
1 AATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACA
*
48540537 AATGCCTTCGGGACTTAGCCCGGATGTAATAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACA
*
48540577 AATGCCTTCGGGACTTAGCCCGGATGTAATAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACA
*
48540617 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACA
* * * * * *
48540657 AATGCCTTCGGGACTTAGCCC-GAAACCAGTCACTAGCGCA
1 AATGCCTTCGGGACTTAGCCCGGATA-TAATAACTCGCACA
48540697 AATGCCTTCGGGACTTAGCCC
1 AATGCCTTCGGGACTTAGCCC
48540718 AGTTATCATC
Statistics
Matches: 242, Mismatches: 18, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 3 0.01
40 239 0.99
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACA
Found at i:48540516 original size:80 final size:80
Alignment explanation
Indices: 48540383--48540717 Score: 435
Period size: 80 Copynumber: 4.2 Consensus size: 80
48540373 AAGCCAAGTA
* * * * * *
48540383 CCTTCGGGATTTA-ACCGGATATAGCT-ACTTGCTC-AATGCCTTCGAGACATAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
* *
48540445 GTAACTCGCACCAATG
65 ATAACTCGCACAAATG
* * *
48540461 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATGCCTTTGGGACTTAGCCCGGATGTAA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
*
48540526 TAACTCACACAAATG
66 TAACTCGCACAAATG
* * *
48540541 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATGTAA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
48540606 TAACTCGCACAAATG
66 TAACTCGCACAAATG
* *
48540621 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC-GAAACCA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TA
* * * *
48540685 GTCACTAGCGCAAATG
65 ATAACTCGCACAAATG
48540701 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
48540718 AGTTATCATC
Statistics
Matches: 227, Mismatches: 26, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
78 13 0.06
79 17 0.07
80 197 0.87
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
TAACTCGCACAAATG
Found at i:48541530 original size:21 final size:21
Alignment explanation
Indices: 48541505--48541553 Score: 98
Period size: 21 Copynumber: 2.3 Consensus size: 21
48541495 CTTCACCTTA
48541505 CTACCATTTCACATCTACTTT
1 CTACCATTTCACATCTACTTT
48541526 CTACCATTTCACATCTACTTT
1 CTACCATTTCACATCTACTTT
48541547 CTACCAT
1 CTACCAT
48541554 GGCCGAATGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.24, C:0.35, G:0.00, T:0.41
Consensus pattern (21 bp):
CTACCATTTCACATCTACTTT
Found at i:48544264 original size:48 final size:48
Alignment explanation
Indices: 48544193--48544290 Score: 187
Period size: 48 Copynumber: 2.0 Consensus size: 48
48544183 TGTTATGAGC
48544193 ATAACATGAAGTCACATGAATGTATATTAAGTCATTACTCTTGGTCTA
1 ATAACATGAAGTCACATGAATGTATATTAAGTCATTACTCTTGGTCTA
*
48544241 ATAACATGAAGTCACATGAATGTATATTAAGTCATTACTGTTGGTCTA
1 ATAACATGAAGTCACATGAATGTATATTAAGTCATTACTCTTGGTCTA
48544289 AT
1 AT
48544291 CCAGTCAAAT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (48 bp):
ATAACATGAAGTCACATGAATGTATATTAAGTCATTACTCTTGGTCTA
Found at i:48550650 original size:49 final size:49
Alignment explanation
Indices: 48550577--48550771 Score: 257
Period size: 49 Copynumber: 3.9 Consensus size: 49
48550567 TAGCCGAAGC
* *
48550577 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
48550626 AATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGATCACAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAAT
* * * *
48550677 TTTC-GAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTG-GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* * *
48550726 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTAAACACGTGACC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC
48550772 TCACAATAGT
Statistics
Matches: 126, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
49 82 0.65
50 4 0.03
51 40 0.32
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:48550696 original size:100 final size:100
Alignment explanation
Indices: 48550583--48550769 Score: 329
Period size: 100 Copynumber: 1.9 Consensus size: 100
48550573 AAGCTATCTG
* *
48550583 GTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAATAATCTGGTACACATAGTAGCCT
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACATAGTAGCCT
*
48550648 GCACTTAGTACTACACACGTGATCACAGTTTTCGA
66 GCACTTAGTACTAAACACGTGATCACAGTTTTCGA
* *
48550683 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCT
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACATAGTAGCCT
48550748 GCACTTAGTACTAAACACGTGA
66 GCACTTAGTACTAAACACGTGA
48550770 CCTCACAATA
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 82 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (100 bp):
GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACATAGTAGCCT
GCACTTAGTACTAAACACGTGATCACAGTTTTCGA
Found at i:48552307 original size:39 final size:39
Alignment explanation
Indices: 48552263--48552422 Score: 266
Period size: 39 Copynumber: 4.1 Consensus size: 39
48552253 AATTATATTA
* *
48552263 CCAGCACAAAGCCTGCGGGACTTTAGCTCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
48552302 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
48552341 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* * *
48552380 CCAACACGAAGCCTGCGGGTCTTTAGCCTGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
48552419 CCAG
1 CCAG
48552423 TGTCTTGCTT
Statistics
Matches: 115, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 115 1.00
ACGTcount: A:0.23, C:0.30, G:0.24, T:0.23
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:48553940 original size:14 final size:16
Alignment explanation
Indices: 48553908--48553946 Score: 55
Period size: 14 Copynumber: 2.6 Consensus size: 16
48553898 ATTTACATAA
*
48553908 CATATATCACATATTT
1 CATATATCACATATGT
48553924 CATATATCAC-T-TGT
1 CATATATCACATATGT
48553938 CATATATCA
1 CATATATCA
48553947 TCATTTTCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 11 0.50
15 1 0.05
16 10 0.45
ACGTcount: A:0.36, C:0.21, G:0.03, T:0.41
Consensus pattern (16 bp):
CATATATCACATATGT
Found at i:48558551 original size:49 final size:49
Alignment explanation
Indices: 48558495--48558593 Score: 189
Period size: 49 Copynumber: 2.0 Consensus size: 49
48558485 AATTGGGACA
*
48558495 ATACAATTCTGTTTGATCGGTTTTAAATTGAATTGAAATTTTATAGCCC
1 ATACAATTCTATTTGATCGGTTTTAAATTGAATTGAAATTTTATAGCCC
48558544 ATACAATTCTATTTGATCGGTTTTAAATTGAATTGAAATTTTATAGCCC
1 ATACAATTCTATTTGATCGGTTTTAAATTGAATTGAAATTTTATAGCCC
48558593 A
1 A
48558594 AACTTTTTGG
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.32, C:0.12, G:0.13, T:0.42
Consensus pattern (49 bp):
ATACAATTCTATTTGATCGGTTTTAAATTGAATTGAAATTTTATAGCCC
Found at i:48563381 original size:16 final size:16
Alignment explanation
Indices: 48563360--48563392 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
48563350 TTTTTATCAC
48563360 TCAATTTACG-CCTTTT
1 TCAATTTA-GTCCTTTT
48563376 TCAATTTAGTCCTTTT
1 TCAATTTAGTCCTTTT
48563392 T
1 T
48563393 AGGTGTTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 1 0.06
16 15 0.94
ACGTcount: A:0.18, C:0.21, G:0.06, T:0.55
Consensus pattern (16 bp):
TCAATTTAGTCCTTTT
Found at i:48564499 original size:12 final size:12
Alignment explanation
Indices: 48564469--48564501 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
48564459 TATATATTTT
48564469 AAAATT-ATATA
1 AAAATTAATATA
48564480 AAAA-TAATATA
1 AAAATTAATATA
48564491 AAAATTAATAT
1 AAAATTAATAT
48564502 GGACGGGTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:48564523 original size:5 final size:5
Alignment explanation
Indices: 48564505--48564542 Score: 51
Period size: 5 Copynumber: 7.8 Consensus size: 5
48564495 TTAATATGGA
* *
48564505 CGGGT CCGGT CGGGC CGGG- CGGGT CGGGT CGGGT CGGG
1 CGGGT CGGGT CGGGT CGGGT CGGGT CGGGT CGGGT CGGG
48564543 CTTGGGGGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
4 4 0.14
5 25 0.86
ACGTcount: A:0.00, C:0.26, G:0.61, T:0.13
Consensus pattern (5 bp):
CGGGT
Found at i:48564529 original size:19 final size:19
Alignment explanation
Indices: 48564505--48564543 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
48564495 TTAATATGGA
48564505 CGGGTCCGGTCGGGCCGGG
1 CGGGTCCGGTCGGGCCGGG
* *
48564524 CGGGTCGGGTCGGGTCGGG
1 CGGGTCCGGTCGGGCCGGG
48564543 C
1 C
48564544 TTGGGGGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.00, C:0.28, G:0.59, T:0.13
Consensus pattern (19 bp):
CGGGTCCGGTCGGGCCGGG
Found at i:48564531 original size:14 final size:15
Alignment explanation
Indices: 48564505--48564542 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
48564495 TTAATATGGA
*
48564505 CGGGTCCGGTCGGGC
1 CGGGTCGGGTCGGGC
*
48564520 CGGG-CGGGTCGGGT
1 CGGGTCGGGTCGGGC
48564534 CGGGTCGGG
1 CGGGTCGGG
48564543 CTTGGGGGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
14 12 0.60
15 8 0.40
ACGTcount: A:0.00, C:0.26, G:0.61, T:0.13
Consensus pattern (15 bp):
CGGGTCGGGTCGGGC
Found at i:48578427 original size:17 final size:16
Alignment explanation
Indices: 48578396--48578444 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
48578386 GGAACACTTA
48578396 ATTTTTATTACTTTATCC
1 ATTTTTATT--TTTATCC
**
48578414 ATTTTTTATTTTTATTT
1 A-TTTTTATTTTTATCC
48578431 ATTTTTATTTTTAT
1 ATTTTTATTTTTAT
48578445 TCTTACTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 13 0.46
17 6 0.21
18 1 0.04
19 8 0.29
ACGTcount: A:0.20, C:0.06, G:0.00, T:0.73
Consensus pattern (16 bp):
ATTTTTATTTTTATCC
Found at i:48578459 original size:22 final size:22
Alignment explanation
Indices: 48578416--48578459 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
48578406 CTTTATCCAT
* *
48578416 TTTTTATTTTTATTTATTTTTA
1 TTTTTATTCTTATTTATATTTA
48578438 TTTTTATTCTTACTTTA-ATTTA
1 TTTTTATTCTTA-TTTATATTTA
48578460 CTAACTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.75
Consensus pattern (22 bp):
TTTTTATTCTTATTTATATTTA
Found at i:48585618 original size:6 final size:6
Alignment explanation
Indices: 48585603--48585656 Score: 63
Period size: 6 Copynumber: 9.0 Consensus size: 6
48585593 ATTAAGTCCA
* * * * *
48585603 TTTATC TTTATG TTTATT TTTATT TTTATT TTTATC TTTCTC TTTATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
48585651 TTTATT
1 TTTATT
48585657 GTTCTTATTT
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 42 1.00
ACGTcount: A:0.15, C:0.07, G:0.02, T:0.76
Consensus pattern (6 bp):
TTTATT
Found at i:48585630 original size:18 final size:18
Alignment explanation
Indices: 48585603--48585656 Score: 72
Period size: 18 Copynumber: 3.0 Consensus size: 18
48585593 ATTAAGTCCA
*
48585603 TTTATCTTTATGTTTATT
1 TTTATCTTTATTTTTATT
* *
48585621 TTTATTTTTATTTTTATC
1 TTTATCTTTATTTTTATT
*
48585639 TTTCTCTTTATTTTTATT
1 TTTATCTTTATTTTTATT
48585657 GTTCTTATTT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.15, C:0.07, G:0.02, T:0.76
Consensus pattern (18 bp):
TTTATCTTTATTTTTATT
Found at i:48586839 original size:16 final size:16
Alignment explanation
Indices: 48586799--48586845 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
48586789 ATCGGCAAAA
*
48586799 GCCGAAATGCCGAAAT
1 GCCGAAAAGCCGAAAT
*
48586815 G-CGAAAAAGTCGAAAT
1 GCCG-AAAAGCCGAAAT
*
48586831 GCCGAAAAGCTGAAA
1 GCCGAAAAGCCGAAA
48586846 GTTTGGCTAC
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
15 2 0.08
16 21 0.84
17 2 0.08
ACGTcount: A:0.45, C:0.19, G:0.26, T:0.11
Consensus pattern (16 bp):
GCCGAAAAGCCGAAAT
Found at i:48587115 original size:29 final size:28
Alignment explanation
Indices: 48587056--48587165 Score: 123
Period size: 29 Copynumber: 3.9 Consensus size: 28
48587046 GTGAGCATGA
* * * *
48587056 ATATGAATGTGACTGGGTCTAACGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
*
48587084 ATATAAATGTGATTTGGGCCTAATGGGTC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
48587113 ATATATAA-GTGATTTGGGCCTAATGGGCC
1 ATATA-AATGTGA-TTGGGCCTAATGGGCC
* *
48587142 ATATAAATATGATTGGGCTTAATG
1 ATATAAATGTGATTGGGCCTAATG
48587166 TGTAACACCC
Statistics
Matches: 71, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
28 24 0.34
29 45 0.63
30 2 0.03
ACGTcount: A:0.29, C:0.12, G:0.27, T:0.32
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:48588624 original size:79 final size:78
Alignment explanation
Indices: 48588522--48588744 Score: 265
Period size: 79 Copynumber: 2.8 Consensus size: 78
48588512 GCTCCTCGTT
* *
48588522 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
48588587 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
*
48588602 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCGG
*
48588665 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
* * * * *
48588680 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
48588743 GA
63 GA
48588745 CATCATTCAA
Statistics
Matches: 125, Mismatches: 11, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
78 47 0.38
79 57 0.46
80 20 0.16
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:48588639 original size:39 final size:40
Alignment explanation
Indices: 48588522--48588744 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
48588512 GCTCCTCGTT
* *
48588522 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
48588562 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
48588602 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
48588641 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
48588680 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
48588721 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
48588745 CATCATTCAA
Statistics
Matches: 166, Mismatches: 9, Indels: 17
0.86 0.05 0.09
Matches are distributed among these distances:
38 2 0.01
39 89 0.54
40 64 0.39
41 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Done.