Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 15 of 255
Found at i:4077729 original size:26 final size:26
Alignment explanation
Indices: 4077693--4077776 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
4077683 TGATACAAAT
4077693 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
4077719 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
4077745 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
4077771 TGATAA
1 TGATAA
4077777 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.35, C:0.06, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:4079887 original size:137 final size:136
Alignment explanation
Indices: 4079563--4079848 Score: 412
Period size: 137 Copynumber: 2.1 Consensus size: 136
4079553 GAGTAGTCTC
* ** * * *
4079563 CCCAAACGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGGCTA-TGATGCTGCATGGACTTTGAAATGGGCCTATGGGCCATAC
* *
4079628 TGTTATCTGAATAAGAGGCTAAGGCCTAGTTTATTGTAATCTGAAAATGGCTCTGGCCCAGTACC
65 TGTTATCTGAATAAGAGGCTAAGGCCTAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAATACC
4079693 ACTGTTA
130 ACTGTTA
** * * *
4079700 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGGCTA-TGATGCTGCATGGACTTTGAAATGGGCCTATGGGCCATAC
4079765 TGTTATCTGAATAAG-GGCTAAGGCCTAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAATACC
65 TGTTATCTGAATAAGAGGCTAAGGCCTAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAATACC
4079829 ACTGTTA
130 ACTGTTA
**
4079836 CCTGAATGGGCTT
1 CCCAAATGGGCTT
4079849 AGGCCCAATG
Statistics
Matches: 144, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
136 65 0.45
137 79 0.55
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGGCTATGATGCTGCATGGACTTTGAAATGGGCCTATGGGCCATACT
GTTATCTGAATAAGAGGCTAAGGCCTAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAATACCA
CTGTTA
Found at i:4082028 original size:16 final size:16
Alignment explanation
Indices: 4082007--4082039 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
4081997 TAAAAGATTA
4082007 AAAGTAA-ATAATACAC
1 AAAGTAATAT-ATACAC
4082023 AAAGTAATATATACAC
1 AAAGTAATATATACAC
4082039 A
1 A
4082040 GGAAAAGCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 14 0.88
17 2 0.12
ACGTcount: A:0.61, C:0.12, G:0.06, T:0.21
Consensus pattern (16 bp):
AAAGTAATATATACAC
Found at i:4083279 original size:15 final size:16
Alignment explanation
Indices: 4083261--4083290 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
4083251 GGTTTTGGGC
4083261 TGTTGGG-TTTTTAGA
1 TGTTGGGCTTTTTAGA
4083276 TGTTGGGCTTTTTAG
1 TGTTGGGCTTTTTAG
4083291 CCCGGACAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.10, C:0.03, G:0.33, T:0.53
Consensus pattern (16 bp):
TGTTGGGCTTTTTAGA
Found at i:4084112 original size:205 final size:205
Alignment explanation
Indices: 4083662--4084617 Score: 1468
Period size: 205 Copynumber: 4.7 Consensus size: 205
4083652 AAATCTGCTT
* * * *
4083662 CTTCGATTTGTTCCCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTTACCATAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCAC
* *
4083727 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCATTGTAAGCACAAGGATGCCAAATCATCTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCATTGTAAGCACAAGGATGCCAAATCATCTT
* * * * *
4083792 GGATCTTGCTTCAGT-ATAAACATCTGAAGGCCAGATCTGCTATGTATCTACTCTCCGTCAAAAT
131 GGATC-TACTTCAGTGA-AATCATCTGAAGGCTAGATCTGCTATGTATCTGCTCTCCATCAAAAT
4083856 GGAGATGCCAGA
194 GGAGATGCCAGA
4083868 CTTCGATTTGTTCTCTGACAATACAGAGATGCC-AATCATCTTAGACTTGCTTTAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCAC
* * * *
4083932 GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAATGATGTCAAACCATCTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCATTGTAAGCACAAGGATGCCAAATCATCTT
** * * * *
4083997 GGATCTACTTCAGTGTAAA-CATCTGAAGTTTGGATCTGCTATGTGTCTGCCCTCCGTCAAAATG
131 GGATCTACTTCAGTG-AAATCATCTGAAGGCTAGATCTGCTATGTATCTGCTCTCCATCAAAATG
* *
4084061 GAGATTCCAGG
195 GAGATGCCAGA
*
4084072 CTTCGACTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCAC
* * * *
4084137 GCGAAAACCAAATCAACTATGTCTTCGATTTGCTCTTTGTAAGCACAAGAATGCCAAATCATTTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCATTGTAAGCACAAGGATGCCAAATCATCTT
* ** *
4084202 AGATCTACTTCAGTGAAATCATCTGAAGGCTAGATCTGCTATGTATCTGCTCTCCATTGAAATAG
131 GGATCTACTTCAGTGAAATCATCTGAAGGCTAGATCTGCTATGTATCTGCTCTCCATCAAAATGG
4084267 AGATGCCAGA
196 AGATGCCAGA
* *
4084277 CTTTGATTTGTTCTCTGACAATACAAAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCAC
*
4084342 GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCATTGTAAGCACAAGGATGCCAAATCATCTT
* * *
4084407 AGATCTACTTCAGTGAAATCATCTGAAGGCTAGATCTTCTATGTATCTGCTCTCCATCGAAATGG
131 GGATCTACTTCAGTGAAATCATCTGAAGGCTAGATCTGCTATGTATCTGCTCTCCATCAAAATGG
*
4084472 AGATGCTAGA
196 AGATGCCAGA
* * *
4084482 CTTCGACTTGTTATCTGACAATACAGAGTTGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCAC
* *
4084547 GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCATTGTAAGCACAAGGATGCCAAACCATTTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCATTGTAAGCACAAGGATGCCAAATCATCTT
4084612 GGATCT
131 GGATCT
4084618 GCTTTAGCCA
Statistics
Matches: 686, Mismatches: 60, Indels: 9
0.91 0.08 0.01
Matches are distributed among these distances:
204 90 0.13
205 563 0.82
206 33 0.05
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.30
Consensus pattern (205 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCAC
GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCATTGTAAGCACAAGGATGCCAAATCATCTT
GGATCTACTTCAGTGAAATCATCTGAAGGCTAGATCTGCTATGTATCTGCTCTCCATCAAAATGG
AGATGCCAGA
Found at i:4093046 original size:16 final size:16
Alignment explanation
Indices: 4093025--4093057 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
4093015 TAAAAGATTA
4093025 AAAGTAAT-TAATACAC
1 AAAGTAATAT-ATACAC
4093041 AAAGTAATATATACAC
1 AAAGTAATATATACAC
4093057 A
1 A
4093058 GGAAAAGCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 15 0.94
17 1 0.06
ACGTcount: A:0.58, C:0.12, G:0.06, T:0.24
Consensus pattern (16 bp):
AAAGTAATATATACAC
Found at i:4094284 original size:15 final size:16
Alignment explanation
Indices: 4094266--4094295 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
4094256 GGTTTTGGGC
4094266 TGTTGGG-TTTTTAGA
1 TGTTGGGCTTTTTAGA
4094281 TGTTGGGCTTTTTAG
1 TGTTGGGCTTTTTAG
4094296 CCCGGGCAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.10, C:0.03, G:0.33, T:0.53
Consensus pattern (16 bp):
TGTTGGGCTTTTTAGA
Found at i:4095241 original size:10 final size:10
Alignment explanation
Indices: 4095226--4095258 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
4095216 AGGTTACCAT
4095226 ATTTTATTTC
1 ATTTTATTTC
*
4095236 ATTTTATTTT
1 ATTTTATTTC
4095246 ATTTT-TTTC
1 ATTTTATTTC
4095255 ATTT
1 ATTT
4095259 ACAAATCTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 7 0.33
10 14 0.67
ACGTcount: A:0.18, C:0.06, G:0.00, T:0.76
Consensus pattern (10 bp):
ATTTTATTTC
Found at i:4095983 original size:3 final size:3
Alignment explanation
Indices: 4095967--4096036 Score: 54
Period size: 3 Copynumber: 23.7 Consensus size: 3
4095957 TATTTATTCC
* ** * *
4095967 TAT TAT T-T TA- TAT TAT TGT CGT TAT TAA TAT ATAC TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT
* *
4096011 CAT TAA TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
4096037 CTAATATCAC
Statistics
Matches: 52, Mismatches: 12, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
2 4 0.08
3 46 0.88
4 2 0.04
ACGTcount: A:0.34, C:0.04, G:0.03, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:4096111 original size:26 final size:26
Alignment explanation
Indices: 4096074--4096164 Score: 71
Period size: 26 Copynumber: 3.5 Consensus size: 26
4096064 AGCAAATCAC
*
4096074 TATCATC-GTTTTTTATTACTATTAT
1 TATCATCATTTTTTTATTACTATTAT
*
4096099 TATCATCATTTTTTTATCTAATA-TAT
1 TATCATCATTTTTTTAT-TACTATTAT
* * *
4096125 TATTAACCTTTTATTATTATTACTATTAT
1 TA-TCATCATTT-TT-TTATTACTATTAT
*
4096154 TATTAT-ATTTT
1 TATCATCATTTT
4096165 CTTTTTATTT
Statistics
Matches: 51, Mismatches: 9, Indels: 11
0.72 0.13 0.15
Matches are distributed among these distances:
25 7 0.14
26 14 0.27
27 13 0.25
28 8 0.16
29 9 0.18
ACGTcount: A:0.29, C:0.10, G:0.01, T:0.60
Consensus pattern (26 bp):
TATCATCATTTTTTTATTACTATTAT
Found at i:4096352 original size:3 final size:3
Alignment explanation
Indices: 4096340--4096540 Score: 122
Period size: 3 Copynumber: 67.3 Consensus size: 3
4096330 ATTATTTGTG
* * ** *
4096340 TTA TTG TTA TTA TTA CTTT TTA TTA TTA CCA TTA TTA TTA CTA TTA
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
4096386 TTT TTA CTT- TTA TTA CTA TTA CTA -TA TTA TTA TTA TTA TTT TCTA
1 TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
* ** * * * * * *
4096431 TTA CTA TCG TTA TTA TTA ATA CTA ATA TTA ATA TTC TTA TTA TTA CTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * ** *
4096479 TTA TTA TTA TCA TTA GTA TTA TTA TT- TT- TTA CCA CTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
4096525 TCA ATA TTA TTA TTA T
1 TTA TTA TTA TTA TTA T
4096541 CGTTTTCATT
Statistics
Matches: 147, Mismatches: 45, Indels: 12
0.72 0.22 0.06
Matches are distributed among these distances:
2 8 0.05
3 133 0.90
4 6 0.04
ACGTcount: A:0.31, C:0.09, G:0.01, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:4096551 original size:18 final size:18
Alignment explanation
Indices: 4096530--4096564 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
4096520 TATTATCAAT
*
4096530 ATTATTATTATCGTTTTC
1 ATTATCATTATCGTTTTC
*
4096548 ATTATCATTGTCGTTTT
1 ATTATCATTATCGTTTT
4096565 TATTTTTCCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.20, C:0.11, G:0.09, T:0.60
Consensus pattern (18 bp):
ATTATCATTATCGTTTTC
Found at i:4098249 original size:25 final size:25
Alignment explanation
Indices: 4098215--4098263 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
4098205 GCGGTGAAGG
*
4098215 TATAAATTGGGAGAAAATGTTTAAT
1 TATAAATTGGAAGAAAATGTTTAAT
4098240 TATAAATTGGAAGAAAATGTTTAA
1 TATAAATTGGAAGAAAATGTTTAA
4098264 AGCTTGGTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.47, C:0.00, G:0.18, T:0.35
Consensus pattern (25 bp):
TATAAATTGGAAGAAAATGTTTAAT
Found at i:4099655 original size:30 final size:28
Alignment explanation
Indices: 4099621--4099680 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 28
4099611 CATTTAATTC
4099621 ATTTCTAAACTATTAAAAATAATTTTTATA
1 ATTTCT-AACTATTAAAAATAA-TTTTATA
* *
4099651 ATTTCTAATTTTTAAAAATAATTTTATA
1 ATTTCTAACTATTAAAAATAATTTTATA
4099679 AT
1 AT
4099681 ATTTTAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 9 0.32
29 13 0.46
30 6 0.21
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (28 bp):
ATTTCTAACTATTAAAAATAATTTTATA
Found at i:4099693 original size:18 final size:17
Alignment explanation
Indices: 4099670--4099706 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
4099660 TTTTAAAAAT
4099670 AATTTTATAATATTTTAA
1 AATTTTATAA-ATTTTAA
*
4099688 AATTTTTTAAATTTTAA
1 AATTTTATAAATTTTAA
4099705 AA
1 AA
4099707 AATTAATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
AATTTTATAAATTTTAA
Found at i:4106864 original size:21 final size:22
Alignment explanation
Indices: 4106838--4106892 Score: 96
Period size: 21 Copynumber: 2.6 Consensus size: 22
4106828 AACAGCGGTG
4106838 GCGGTGAGATTAGG-TACTGTA
1 GCGGTGAGATTAGGATACTGTA
4106859 GCGGTGAGATT-GGATACTGTA
1 GCGGTGAGATTAGGATACTGTA
4106880 GCGGTGAGATTAG
1 GCGGTGAGATTAG
4106893 AAACAGCGGT
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
20 2 0.06
21 29 0.91
22 1 0.03
ACGTcount: A:0.24, C:0.09, G:0.40, T:0.27
Consensus pattern (22 bp):
GCGGTGAGATTAGGATACTGTA
Found at i:4107251 original size:36 final size:34
Alignment explanation
Indices: 4107173--4107253 Score: 94
Period size: 36 Copynumber: 2.3 Consensus size: 34
4107163 TTAAATATAC
4107173 AATAAAATATTTTTAAATTATATTCATAATAAAAT
1 AATAAAATATTTTTAAATTATATT-ATAATAAAAT
*
4107208 -ATCAAAATATTTTTACAGATTATATT-TGAATCAAAT
1 AAT-AAAATATTTTTA-A-ATTATATTAT-AATAAAAT
4107244 AATAAAATAT
1 AATAAAATAT
4107254 AAATTAAATT
Statistics
Matches: 40, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
34 2 0.05
35 13 0.32
36 15 0.38
37 10 0.25
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.41
Consensus pattern (34 bp):
AATAAAATATTTTTAAATTATATTATAATAAAAT
Found at i:4109063 original size:15 final size:16
Alignment explanation
Indices: 4109019--4109067 Score: 55
Period size: 19 Copynumber: 2.9 Consensus size: 16
4109009 TGTTCTTATT
4109019 TATTTATGTTTATAATTAA
1 TATTTAT-TTTA-AA-TAA
4109038 TATTTATTTTTAAATAA
1 TATTTA-TTTTAAATAA
4109055 T-TTTATTTTAAAT
1 TATTTATTTTAAAT
4109068 CTTTTAATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
15 8 0.28
16 4 0.14
17 4 0.14
18 2 0.07
19 10 0.34
20 1 0.03
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (16 bp):
TATTTATTTTAAATAA
Found at i:4112348 original size:28 final size:29
Alignment explanation
Indices: 4112297--4112370 Score: 82
Period size: 29 Copynumber: 2.6 Consensus size: 29
4112287 CAAAAAAAAC
* *
4112297 TATAAAGAATAATT-AAAATTAT-AAATTAT
1 TATAAA-ATTAATTAAAAATCATAAAATT-T
4112326 TAT-AAATTAATTAAAAATCATAAAATTT
1 TATAAAATTAATTAAAAATCATAAAATTT
*
4112354 TATAAAATAAATTAAAA
1 TATAAAATTAATTAAAA
4112371 CAAAGCTTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
27 6 0.15
28 13 0.33
29 20 0.51
ACGTcount: A:0.61, C:0.01, G:0.01, T:0.36
Consensus pattern (29 bp):
TATAAAATTAATTAAAAATCATAAAATTT
Found at i:4112607 original size:18 final size:18
Alignment explanation
Indices: 4112596--4112631 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
4112586 ATTTTATACG
4112596 TTTTAATAATTTCTAAAA
1 TTTTAATAATTTCTAAAA
*
4112614 TTTTAATAATTTATAAAA
1 TTTTAATAATTTCTAAAA
4112632 AAAACTTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (18 bp):
TTTTAATAATTTCTAAAA
Found at i:4112688 original size:30 final size:30
Alignment explanation
Indices: 4112652--4112727 Score: 82
Period size: 29 Copynumber: 2.6 Consensus size: 30
4112642 AAAAAATCAT
*
4112652 TTTAATTATTTTATAATATTTTTTATAAAA
1 TTTAATTATTTTATAATATATTTTATAAAA
* * **
4112682 TTTAATTATTTGA-ATTATATTTTATAATT
1 TTTAATTATTTTATAATATATTTTATAAAA
* *
4112711 TTTTATTTTTTTATAAT
1 TTTAATTATTTTATAAT
4112728 TTCGAAATGA
Statistics
Matches: 36, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
29 22 0.61
30 14 0.39
ACGTcount: A:0.34, C:0.00, G:0.01, T:0.64
Consensus pattern (30 bp):
TTTAATTATTTTATAATATATTTTATAAAA
Found at i:4113372 original size:17 final size:16
Alignment explanation
Indices: 4113350--4113399 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 16
4113340 GCCACACCAA
*
4113350 AAAAAATTTAAAATTAT
1 AAAAAATTTAAAA-AAT
*
4113367 AAAAAATTCAAAAAAT
1 AAAAAATTTAAAAAAT
*
4113383 AAAAAGTTTATAAAAAT
1 AAAAAATTTA-AAAAAT
4113400 TCAAAAAATA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
16 10 0.36
17 18 0.64
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.28
Consensus pattern (16 bp):
AAAAAATTTAAAAAAT
Found at i:4113379 original size:26 final size:27
Alignment explanation
Indices: 4113350--4113412 Score: 80
Period size: 26 Copynumber: 2.4 Consensus size: 27
4113340 GCCACACCAA
*
4113350 AAAAAATTTAAAA--TTATAAAAAATTC
1 AAAAAATTAAAAAGTTTAT-AAAAATTC
4113376 AAAAAA-TAAAAAGTTTATAAAAATTC
1 AAAAAATTAAAAAGTTTATAAAAATTC
4113402 AAAAAA-TAAAA
1 AAAAAATTAAAA
4113413 GAGTATGAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
25 5 0.15
26 25 0.74
27 4 0.12
ACGTcount: A:0.70, C:0.03, G:0.02, T:0.25
Consensus pattern (27 bp):
AAAAAATTAAAAAGTTTATAAAAATTC
Found at i:4113509 original size:51 final size:51
Alignment explanation
Indices: 4113453--4113556 Score: 190
Period size: 51 Copynumber: 2.0 Consensus size: 51
4113443 AGCTACCATG
*
4113453 TTTAAAAATTTAATGATTAATTTTTAATAAAAAATAGCAAGTCAACTATTT
1 TTTAAAAATTTAATGATTAATTTTCAATAAAAAATAGCAAGTCAACTATTT
*
4113504 TTTAAAAATTTAATGGTTAATTTTCAATAAAAAATAGCAAGTCAACTATTT
1 TTTAAAAATTTAATGATTAATTTTCAATAAAAAATAGCAAGTCAACTATTT
4113555 TT
1 TT
4113557 GAAAGGTTTA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.45, C:0.07, G:0.07, T:0.41
Consensus pattern (51 bp):
TTTAAAAATTTAATGATTAATTTTCAATAAAAAATAGCAAGTCAACTATTT
Found at i:4114577 original size:18 final size:18
Alignment explanation
Indices: 4114538--4114585 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 18
4114528 ATTGTAATTA
4114538 TTTTATAATTTGAATGATT
1 TTTTATAATTT-AATGATT
4114557 TTTTATAATTTATTATG-TT
1 TTTTATAATTTA--ATGATT
4114576 TTTT-TAATTT
1 TTTTATAATTT
4114586 CGAAATGAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
18 7 0.26
19 17 0.63
20 3 0.11
ACGTcount: A:0.27, C:0.00, G:0.06, T:0.67
Consensus pattern (18 bp):
TTTTATAATTTAATGATT
Found at i:4116379 original size:15 final size:15
Alignment explanation
Indices: 4116359--4116387 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
4116349 CACTAGTTTT
4116359 GGCAAAGGGAGGATA
1 GGCAAAGGGAGGATA
4116374 GGCAAAGGGAGGAT
1 GGCAAAGGGAGGAT
4116388 CTCAAGGGCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.38, C:0.07, G:0.48, T:0.07
Consensus pattern (15 bp):
GGCAAAGGGAGGATA
Found at i:4117268 original size:20 final size:21
Alignment explanation
Indices: 4117225--4117270 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
4117215 ACTATTTTGT
4117225 TATGGG-CCAACTGTATTGAA
1 TATGGGCCCAACTGTATTGAA
*
4117245 -ATGGGCCCAACTGTGTT-AA
1 TATGGGCCCAACTGTATTGAA
4117264 TATGGGC
1 TATGGGC
4117271 AAGGCCCAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (21 bp):
TATGGGCCCAACTGTATTGAA
Found at i:4126438 original size:25 final size:26
Alignment explanation
Indices: 4126405--4126455 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
4126395 AACAAGTAAT
* *
4126405 TTAAAAATTATAA-AAAAATTAAAAA
1 TTAAAAATTAAAATAAAAAATAAAAA
*
4126430 TTAAGAATTAAAATAAAAAATAAAAA
1 TTAAAAATTAAAATAAAAAATAAAAA
4126456 AAGTATGAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 11 0.50
26 11 0.50
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.25
Consensus pattern (26 bp):
TTAAAAATTAAAATAAAAAATAAAAA
Found at i:4129784 original size:23 final size:24
Alignment explanation
Indices: 4129756--4129800 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
4129746 TAATAATTTT
4129756 ATAAATATTAATCA-TTTATAAAA
1 ATAAATATTAATCAGTTTATAAAA
* *
4129779 ATAAATTTTAATTAGTTTATAA
1 ATAAATATTAATCAGTTTATAA
4129801 TAATTTTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 12 0.63
24 7 0.37
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (24 bp):
ATAAATATTAATCAGTTTATAAAA
Found at i:4129849 original size:21 final size:20
Alignment explanation
Indices: 4129798--4129861 Score: 65
Period size: 20 Copynumber: 3.0 Consensus size: 20
4129788 AATTAGTTTA
* *
4129798 TAATAATTTTTTATAAAATT
1 TAATAATTTTTTTTATAATT
*
4129818 TAATAAATTTTTTTATAATT
1 TAATAATTTTTTTTATAATT
*
4129838 TGAATGATTTTTTTATTATAATT
1 T-AAT-AATTTTTT-TTATAATT
4129861 T
1 T
4129862 TTTATTTTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
20 18 0.50
21 3 0.08
22 6 0.17
23 9 0.25
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (20 bp):
TAATAATTTTTTTTATAATT
Found at i:4134225 original size:14 final size:14
Alignment explanation
Indices: 4134206--4134234 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
4134196 ATAACAATGG
4134206 TTTTTATCATGATT
1 TTTTTATCATGATT
4134220 TTTTTATCATGATT
1 TTTTTATCATGATT
4134234 T
1 T
4134235 GAAACAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.66
Consensus pattern (14 bp):
TTTTTATCATGATT
Found at i:4138259 original size:45 final size:45
Alignment explanation
Indices: 4138186--4138273 Score: 149
Period size: 45 Copynumber: 2.0 Consensus size: 45
4138176 GCATGATACT
4138186 ATTAAATTAGTGATTTTGCTTGTAGCCTTATACTCTTGGCCTACA
1 ATTAAATTAGTGATTTTGCTTGTAGCCTTATACTCTTGGCCTACA
* * *
4138231 ATTAGATTGGTGATTTTTCTTGTAGCCTTATACTCTTGGCCTA
1 ATTAAATTAGTGATTTTGCTTGTAGCCTTATACTCTTGGCCTA
4138274 TCTTCCAATT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.22, C:0.17, G:0.17, T:0.44
Consensus pattern (45 bp):
ATTAAATTAGTGATTTTGCTTGTAGCCTTATACTCTTGGCCTACA
Found at i:4141081 original size:24 final size:24
Alignment explanation
Indices: 4141054--4141099 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
4141044 ATAAGTAACT
* * *
4141054 TTGTAAAAGATTTAGTAATTTACA
1 TTGTAAAAAATTCAATAATTTACA
4141078 TTGTAAAAAATTCAATAATTTA
1 TTGTAAAAAATTCAATAATTTA
4141100 TTGAAAATGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.46, C:0.04, G:0.09, T:0.41
Consensus pattern (24 bp):
TTGTAAAAAATTCAATAATTTACA
Found at i:4142672 original size:42 final size:38
Alignment explanation
Indices: 4142626--4142712 Score: 104
Period size: 39 Copynumber: 2.2 Consensus size: 38
4142616 TAATTAAAAT
4142626 TTTTAAAATTTAAA-AAGTTTAACAAAATATATAAAAAATATA
1 TTTTAAAATTTAAATAA-TTT-A-AAAA-AT-TAAAAAATATA
*
4142668 TTTTAAAATTTAAATTTATTTAAAAAATTAAAAAATATA
1 TTTTAAAATTTAAA-TAATTTAAAAAATTAAAAAATATA
4142707 TTTTAA
1 TTTTAA
4142713 TTTTTTTAAA
Statistics
Matches: 42, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
39 17 0.40
40 2 0.05
41 4 0.10
42 15 0.36
43 3 0.07
44 1 0.02
ACGTcount: A:0.56, C:0.01, G:0.01, T:0.41
Consensus pattern (38 bp):
TTTTAAAATTTAAATAATTTAAAAAATTAAAAAATATA
Found at i:4142687 original size:18 final size:18
Alignment explanation
Indices: 4142661--4142699 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
4142651 AATATATAAA
* *
4142661 AAATATATTTTAAAATTT
1 AAATATATTTAAAAAATT
*
4142679 AAATTTATTTAAAAAATT
1 AAATATATTTAAAAAATT
4142697 AAA
1 AAA
4142700 AAATATATTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
AAATATATTTAAAAAATT
Found at i:4145859 original size:16 final size:16
Alignment explanation
Indices: 4145838--4145877 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
4145828 CTTTAATCCT
*
4145838 TTTATTTACTT-ATTTA
1 TTTATTCACTTGA-TTA
4145854 TTTATTCACTTGATTA
1 TTTATTCACTTGATTA
4145870 TTTATTCA
1 TTTATTCA
4145878 TTATTCTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 21 0.95
17 1 0.05
ACGTcount: A:0.25, C:0.10, G:0.03, T:0.62
Consensus pattern (16 bp):
TTTATTCACTTGATTA
Found at i:4145946 original size:27 final size:27
Alignment explanation
Indices: 4145847--4145939 Score: 72
Period size: 27 Copynumber: 3.6 Consensus size: 27
4145837 TTTTATTTAC
*
4145847 TTATTTATTTATTCAC-T-TGATT-AT
1 TTATTTATTTATTCACATATCATTCAT
* *
4145871 TTATTCA-TTATTCTTTACAT-TTATTCAT
1 TTATTTATTTATTC---ACATATCATTCAT
* *
4145899 TTATTTGTTTATTCACATATCATTCCT
1 TTATTTATTTATTCACATATCATTCAT
4145926 TTATTTATTT-TTCA
1 TTATTTATTTATTCA
4145940 TCTTATCCCG
Statistics
Matches: 55, Mismatches: 7, Indels: 12
0.74 0.09 0.16
Matches are distributed among these distances:
23 6 0.11
24 6 0.11
26 10 0.18
27 20 0.36
28 7 0.13
29 6 0.11
ACGTcount: A:0.24, C:0.13, G:0.02, T:0.61
Consensus pattern (27 bp):
TTATTTATTTATTCACATATCATTCAT
Found at i:4146025 original size:3 final size:3
Alignment explanation
Indices: 4146017--4146059 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
4146007 GTTTGTGCCT
4146017 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
4146060 CATCTATTCA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:4151265 original size:48 final size:48
Alignment explanation
Indices: 4151193--4151288 Score: 158
Period size: 48 Copynumber: 2.0 Consensus size: 48
4151183 TCTCTAAAGG
*
4151193 TTGAATAAGACGGGGATAACGAATAAAGTAGAATTAACCCTAAATCTT
1 TTGAATAAGACGGGGACAACGAATAAAGTAGAATTAACCCTAAATCTT
*
4151241 TTGAATAAGACGAGGG-CAATGAATAAAGTAGAATTAACCCTAAATCTT
1 TTGAATAAGACG-GGGACAACGAATAAAGTAGAATTAACCCTAAATCTT
4151289 CTTTGTCATA
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
48 42 0.93
49 3 0.07
ACGTcount: A:0.44, C:0.12, G:0.19, T:0.25
Consensus pattern (48 bp):
TTGAATAAGACGGGGACAACGAATAAAGTAGAATTAACCCTAAATCTT
Found at i:4159869 original size:18 final size:18
Alignment explanation
Indices: 4159848--4159888 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
4159838 CCTCATGTTA
4159848 TGCGAAC-CCCTTTGCAGG
1 TGCGAACGCCC-TTGCAGG
*
4159866 TGCGAACGCCCTTGCATG
1 TGCGAACGCCCTTGCAGG
4159884 TGCGA
1 TGCGA
4159889 GCCCTGTATG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 18 0.86
19 3 0.14
ACGTcount: A:0.17, C:0.32, G:0.29, T:0.22
Consensus pattern (18 bp):
TGCGAACGCCCTTGCAGG
Found at i:4162971 original size:26 final size:26
Alignment explanation
Indices: 4162941--4163048 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
4162931 TGAAATGCCC
4162941 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
4162967 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
4162993 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
4163019 ATCATGGAACATTTACCTAACCCGTT
1 ATCATGGAACATTTACCTAACCCATT
4163045 ATCA
1 ATCA
4163049 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.34, C:0.25, G:0.08, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:4163357 original size:28 final size:29
Alignment explanation
Indices: 4163314--4163385 Score: 94
Period size: 29 Copynumber: 2.6 Consensus size: 29
4163304 GTTACAATAT
4163314 GTGTG-ACCCTACATGTACGAAC-CCTAG
1 GTGTGAACCCTACATGTACGAACTCCTAG
* *
4163341 GTGTGAACCCTATATGTGCGAACTCCTAG
1 GTGTGAACCCTACATGTACGAACTCCTAG
**
4163370 GTGCAAACCCTACATG
1 GTGTGAACCCTACATG
4163386 CGTGAACCCA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
27 5 0.13
28 15 0.39
29 18 0.47
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (29 bp):
GTGTGAACCCTACATGTACGAACTCCTAG
Found at i:4163392 original size:29 final size:28
Alignment explanation
Indices: 4163319--4163438 Score: 89
Period size: 29 Copynumber: 4.2 Consensus size: 28
4163309 AATATGTGTG
** **
4163319 ACCCTACATGTACGAACCCTAGGTGTGA
1 ACCCTACATGCGCGAACCCTAGGTGCAA
* *
4163347 ACCCTATATGTGCGAACTCCTAGGTGCAA
1 ACCCTACATGCGCGAAC-CCTAGGTGCAA
* *
4163376 ACCCTACATGCGTGAACCCATATGTGCAA
1 ACCCTACATGCGCGAACCC-TAGGTGCAA
* * * *
4163405 A-CATATATGTGCGAACCCTGTATGTGCAA
1 ACCCTACATGCGCGAACCC--TAGGTGCAA
4163434 ACCCT
1 ACCCT
4163439 GCTTATGTAT
Statistics
Matches: 74, Mismatches: 14, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
28 30 0.41
29 42 0.57
30 2 0.03
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.23
Consensus pattern (28 bp):
ACCCTACATGCGCGAACCCTAGGTGCAA
Found at i:4163430 original size:15 final size:15
Alignment explanation
Indices: 4163396--4163439 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
4163386 CGTGAACCCA
* *
4163396 TATGTGCAAA-CATA
1 TATGTGCAAACCCTG
*
4163410 TATGTGCGAACCCTG
1 TATGTGCAAACCCTG
4163425 TATGTGCAAACCCTG
1 TATGTGCAAACCCTG
4163440 CTTATGTATG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
14 9 0.36
15 16 0.64
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (15 bp):
TATGTGCAAACCCTG
Found at i:4167101 original size:132 final size:131
Alignment explanation
Indices: 4166883--4167174 Score: 293
Period size: 132 Copynumber: 2.2 Consensus size: 131
4166873 ACGGGAGATT
* * * * ** ** ** *
4166883 GCAACCCAGCATGATAGGGCACTACTCCCCGAATTTCCAAACATCGAGTATTTCCTTTGTTTTAA
1 GCAACCCAGCACGATAGGGCACGA-TTCCCAAATCACCAAACATCGAACATTTCCTTCATTTCAA
* ** ** *
4166948 AGAGTTTCTAGAAAACGTGAGTGAGGTTCCGAAGGAATC-TTCGATTGTTTTGAACAAATGAA-A
65 AGAGTTTCTAGAAAACATGAGTGAAATTCAAAAGGAA-CGTTCGATTATTTTGAACAAAT-AAGA
4167011 AACGC
128 AA-GC
*
4167016 GCAACCCAGCACGATAGGGCACGATTCTCAAATCACCAAACATCGAACATTTCCTTCATTTCAAA
1 GCAACCCAGCACGATAGGGCACGATTCCCAAATCACCAAACATCGAACATTTCCTTCATTTCAAA
* * *
4167081 GAGTTTTTAG-AAACAATGAGTGAAATTCAAAAGGGACGTTCGATTATTTTGAGCAAATAAGAAA
66 GAGTTTCTAGAAAAC-ATGAGTGAAATTCAAAAGGAACGTTCGATTATTTTGAACAAATAAGAAA
**
4167145 TT
130 GC
* *
4167147 GCAACCCAACACGTTAGGGCACGATTCC
1 GCAACCCAGCACGATAGGGCACGATTCC
4167175 ACGAATTGTC
Statistics
Matches: 130, Mismatches: 26, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
131 32 0.25
132 76 0.58
133 22 0.17
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (131 bp):
GCAACCCAGCACGATAGGGCACGATTCCCAAATCACCAAACATCGAACATTTCCTTCATTTCAAA
GAGTTTCTAGAAAACATGAGTGAAATTCAAAAGGAACGTTCGATTATTTTGAACAAATAAGAAAG
C
Found at i:4181361 original size:26 final size:26
Alignment explanation
Indices: 4181332--4181413 Score: 112
Period size: 26 Copynumber: 3.2 Consensus size: 26
4181322 TGGTACAAAT
*
4181332 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGATTAGGTAAATGTTTCA
*
4181358 TGATAATGGATTAGGTAAATG-CTCTA
1 TGATAATGGATTAGGTAAATGTTTC-A
* *
4181384 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTTCA
4181410 TGAT
1 TGAT
4181414 GGGCATTTCA
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
25 2 0.04
26 46 0.94
27 1 0.02
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.38
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTTCA
Found at i:4189764 original size:18 final size:18
Alignment explanation
Indices: 4189741--4189777 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
4189731 CGACTAAAAG
4189741 GAGGGGAATTATGGTTTT
1 GAGGGGAATTATGGTTTT
4189759 GAGGGGAATTATGGTTTT
1 GAGGGGAATTATGGTTTT
4189777 G
1 G
4189778 TTTCAATGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.22, C:0.00, G:0.41, T:0.38
Consensus pattern (18 bp):
GAGGGGAATTATGGTTTT
Found at i:4190193 original size:23 final size:24
Alignment explanation
Indices: 4190164--4190223 Score: 86
Period size: 23 Copynumber: 2.5 Consensus size: 24
4190154 GTCCACTTGG
4190164 TTTTATTTTTATTTCAATTGA-GT
1 TTTTATTTTTATTTCAATTGATGT
* *
4190187 TTTTATTATTATTTCAATTTATGT
1 TTTTATTTTTATTTCAATTGATGT
4190211 TTTTATTCTTTAT
1 TTTTATT-TTTAT
4190224 GATTCTTTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
23 19 0.59
24 9 0.28
25 4 0.12
ACGTcount: A:0.22, C:0.05, G:0.05, T:0.68
Consensus pattern (24 bp):
TTTTATTTTTATTTCAATTGATGT
Found at i:4198200 original size:22 final size:21
Alignment explanation
Indices: 4198182--4198223 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
4198172 AAATTTATGT
4198182 TTTTATTCATTTTTATTTAAGA
1 TTTTATT-ATTTTTATTTAAGA
*
4198204 TTTTATTATTTATTTTTTAA
1 TTTTATTATTT-TTATTTAA
4198224 AATTATCTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.69
Consensus pattern (21 bp):
TTTTATTATTTTTATTTAAGA
Found at i:4198361 original size:31 final size:29
Alignment explanation
Indices: 4198322--4198416 Score: 118
Period size: 31 Copynumber: 3.1 Consensus size: 29
4198312 AAAATTTCTA
4198322 TTTTAAAATTTTCATTATACATGTATTTTT
1 TTTTAAAATTTTCATTATACAT-TATTTTT
*
4198352 TTTTCAAAATTTATACATTATACATTATATATTA
1 TTTT-AAAATTT-T-CATTATACATTAT-T-TTT
*
4198386 TTTTAAAATTTTTATTATACATTATTTTT
1 TTTTAAAATTTTCATTATACATTATTTTT
4198415 TT
1 TT
4198417 ATATATTGTT
Statistics
Matches: 57, Mismatches: 3, Indels: 11
0.80 0.04 0.15
Matches are distributed among these distances:
29 4 0.07
30 5 0.09
31 19 0.33
32 5 0.09
33 18 0.32
34 6 0.11
ACGTcount: A:0.34, C:0.06, G:0.01, T:0.59
Consensus pattern (29 bp):
TTTTAAAATTTTCATTATACATTATTTTT
Found at i:4205997 original size:89 final size:89
Alignment explanation
Indices: 4205873--4206188 Score: 235
Period size: 89 Copynumber: 3.4 Consensus size: 89
4205863 TCATCATGGT
* ** * *
4205873 GAATCTTATCTCCCTAAAGTGGCCGTGGAGTAGATTGAAGCCATAAGTCTTATCTCCCTGAAGTT
1 GAATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGCCATAAGTCTTATCTCTCTGAAGTT
* *
4205938 GCAGTGGAGCAGACTAAAGATAGC
66 GCAGTAGAGCAGACTAAAGATAAC
* * * *
4205962 GAATCTTATTTCCCTAAAGTTGTAGTGGAACAGATTAAAGCTATAAATAAAACAGATCTTATCTC
1 GAATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGC----CAT---A-AG-TCTTATCTC
* * * *
4206027 TCTTAAGTTGTAGTAGAGCAGAGTGAAGATAAC
57 TCTGAAGTTGCAGTAGAGCAGACTAAAGATAAC
* * **
4206060 -ATGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGCCACCA-TCCTTATCTCTCTGAAG
1 GA-ATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGCCATAAGT-CTTATCTCTCTGAAG
* *
4206123 TTGCAATAGAGCAGGA-TAAAAATACAC
64 TTGCAGTAGAGCA-GACTAAAGATA-AC
* * * * * *
4206150 AAACCTTATC-CCCTGGAAGTTGCAGTGGAGTAGGTTGAA
1 GAATCTTATCTCCCT-AAAGTTGTAGTGGAGCAGATTGAA
4206189 ATTACCAAAT
Statistics
Matches: 179, Mismatches: 33, Indels: 29
0.74 0.14 0.12
Matches are distributed among these distances:
88 1 0.01
89 69 0.39
90 32 0.18
91 1 0.01
93 2 0.01
94 1 0.01
96 1 0.01
97 3 0.02
98 69 0.39
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (89 bp):
GAATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGCCATAAGTCTTATCTCTCTGAAGTT
GCAGTAGAGCAGACTAAAGATAAC
Found at i:4206094 original size:98 final size:98
Alignment explanation
Indices: 4205920--4206100 Score: 238
Period size: 98 Copynumber: 1.8 Consensus size: 98
4205910 AAGCCATAAG
* * *
4205920 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGCGAATCTTATTTCCCTAAAGTTGT
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGACTAAAGATAACGAATCTTATCTCCCTAAAGTTGT
4205985 AGTGGAACAGATTAAAGCTATAAATAAAACAGA
66 AGTGGAACAGATTAAAGCTATAAATAAAACAGA
* * * * * * *
4206018 TCTTATCTCTCTTAAGTTGTAGTAGAGCAGAGTGAAGATAAC-ATGTCTTATCTCCCTGAAGTTG
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGACTAAAGATAACGA-ATCTTATCTCCCTAAAGTTG
* *
4206082 TAGTGGAGCAGATTGAAGC
65 TAGTGGAACAGATTAAAGC
4206101 CACCATCCTT
Statistics
Matches: 70, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
97 1 0.01
98 69 0.99
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.30
Consensus pattern (98 bp):
TCTTATCTCCCTGAAGTTGCAGTAGAGCAGACTAAAGATAACGAATCTTATCTCCCTAAAGTTGT
AGTGGAACAGATTAAAGCTATAAATAAAACAGA
Found at i:4206135 original size:44 final size:45
Alignment explanation
Indices: 4206019--4206136 Score: 139
Period size: 45 Copynumber: 2.6 Consensus size: 45
4206009 TAAAACAGAT
* * *
4206019 CTTATCTCTCTTAAGTTGTAGTAGAGCAGAGTGAAGATAACATGT
1 CTTATCTCTCTGAAGTTGTAGTAGAGCAGAGTGAAGACAACATGC
* * * * *
4206064 CTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGCCACCAT-C
1 CTTATCTCTCTGAAGTTGTAGTAGAGCAGAGTGAAGACAACATGC
* *
4206108 CTTATCTCTCTGAAGTTGCAATAGAGCAG
1 CTTATCTCTCTGAAGTTGTAGTAGAGCAG
4206137 GATAAAAATA
Statistics
Matches: 61, Mismatches: 12, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
44 25 0.41
45 36 0.59
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (45 bp):
CTTATCTCTCTGAAGTTGTAGTAGAGCAGAGTGAAGACAACATGC
Found at i:4209123 original size:21 final size:22
Alignment explanation
Indices: 4209097--4209142 Score: 76
Period size: 21 Copynumber: 2.1 Consensus size: 22
4209087 GTCCACTTGG
4209097 TTTTTTTATTTCAATTGA-GTT
1 TTTTTTTATTTCAATTGATGTT
*
4209118 TTTTTTTATTTCAATTTATGTT
1 TTTTTTTATTTCAATTGATGTT
4209140 TTT
1 TTT
4209143 ATTCTTTATG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 17 0.74
22 6 0.26
ACGTcount: A:0.17, C:0.04, G:0.07, T:0.72
Consensus pattern (22 bp):
TTTTTTTATTTCAATTGATGTT
Found at i:4209677 original size:13 final size:13
Alignment explanation
Indices: 4209640--4209679 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
4209630 TTAGATGGAC
4209640 ATATATTATTTCAT
1 ATATATTATTT-AT
* *
4209654 AGATCTTATTTAT
1 ATATATTATTTAT
4209667 ATATATTATTTAT
1 ATATATTATTTAT
4209680 TTTGAAATTT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
13 13 0.59
14 9 0.41
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.57
Consensus pattern (13 bp):
ATATATTATTTAT
Found at i:4217266 original size:24 final size:23
Alignment explanation
Indices: 4217230--4217275 Score: 74
Period size: 24 Copynumber: 2.0 Consensus size: 23
4217220 CATTTTGAGT
4217230 AAATATTCTTTTATTCTTTCCAA
1 AAATATTCTTTTATTCTTTCCAA
*
4217253 AAATAATTGTTTTATTCTTTCCA
1 AAAT-ATTCTTTTATTCTTTCCA
4217276 TTGGAGTAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 4 0.19
24 17 0.81
ACGTcount: A:0.30, C:0.15, G:0.02, T:0.52
Consensus pattern (23 bp):
AAATATTCTTTTATTCTTTCCAA
Found at i:4224023 original size:21 final size:22
Alignment explanation
Indices: 4223988--4224037 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 22
4223978 TGTCCACTTG
*
4223988 GTTTTCTTTTTATTTCAATTGA-
1 GTTTT-TTTTAATTTCAATTGAT
*
4224010 GTTTTTTTTAATTTCAATTTAT
1 GTTTTTTTTAATTTCAATTGAT
4224032 GTTTTT
1 GTTTTT
4224038 ATTCTTTATG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 14 0.56
22 11 0.44
ACGTcount: A:0.18, C:0.06, G:0.08, T:0.68
Consensus pattern (22 bp):
GTTTTTTTTAATTTCAATTGAT
Found at i:4224363 original size:28 final size:28
Alignment explanation
Indices: 4224330--4224398 Score: 68
Period size: 30 Copynumber: 2.4 Consensus size: 28
4224320 TCTTATGTAA
*
4224330 ATATATTTGTTTAAATTTATTTACATAT
1 ATATATTTGTTTAAATCTATTTACATAT
* * **
4224358 ATATATCTTCTTTTGAATCTATTTATGTAT
1 ATATAT-TT-GTTTAAATCTATTTACATAT
4224388 ATA-ATTTGTTT
1 ATATATTTGTTT
4224399 CTTTAAAGGA
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
27 3 0.09
28 8 0.24
29 4 0.12
30 18 0.55
ACGTcount: A:0.30, C:0.06, G:0.06, T:0.58
Consensus pattern (28 bp):
ATATATTTGTTTAAATCTATTTACATAT
Found at i:4224530 original size:23 final size:22
Alignment explanation
Indices: 4224504--4224547 Score: 79
Period size: 23 Copynumber: 2.0 Consensus size: 22
4224494 TCATTTCATG
4224504 TATATTATTTATTTAGATGGACA
1 TATATTATTTATTTAGA-GGACA
4224527 TATATTATTTATTTAGAGGAC
1 TATATTATTTATTTAGAGGAC
4224548 GTTACAAAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 4 0.19
23 17 0.81
ACGTcount: A:0.34, C:0.05, G:0.14, T:0.48
Consensus pattern (22 bp):
TATATTATTTATTTAGAGGACA
Found at i:4227236 original size:22 final size:21
Alignment explanation
Indices: 4227206--4227271 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
4227196 TACAAATTAA
4227206 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
4227228 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
4227249 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
4227268 ATCT
1 ATCT
4227272 AAGATTGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:4227258 original size:19 final size:19
Alignment explanation
Indices: 4227223--4227320 Score: 146
Period size: 19 Copynumber: 5.2 Consensus size: 19
4227213 AGATTACAAG
4227223 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
4227244 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
4227263 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
*
4227280 ATCATATCTAATATTGCAT
1 ATCATATCTAAGATTGCAT
*
4227299 ATCATATCTAAGATTGTAT
1 ATCATATCTAAGATTGCAT
4227318 ATC
1 ATC
4227321 CTTAAATATT
Statistics
Matches: 72, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
17 16 0.22
19 47 0.65
20 1 0.01
21 8 0.11
ACGTcount: A:0.36, C:0.15, G:0.09, T:0.40
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:4227330 original size:36 final size:36
Alignment explanation
Indices: 4227223--4227317 Score: 145
Period size: 36 Copynumber: 2.5 Consensus size: 36
4227213 AGATTACAAG
*
4227223 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATC-T-AAGATTG--TATCATATCTAATATTGCAT
4227263 ATCATATCTAAGATTGTATCATATCTAATATTGCAT
1 ATCATATCTAAGATTGTATCATATCTAATATTGCAT
4227299 ATCATATCTAAGATTGTAT
1 ATCATATCTAAGATTGTAT
4227318 ATCCTTAAAT
Statistics
Matches: 54, Mismatches: 1, Indels: 4
0.92 0.02 0.07
Matches are distributed among these distances:
36 38 0.70
38 7 0.13
39 1 0.02
40 8 0.15
ACGTcount: A:0.36, C:0.15, G:0.09, T:0.40
Consensus pattern (36 bp):
ATCATATCTAAGATTGTATCATATCTAATATTGCAT
Found at i:4229054 original size:26 final size:26
Alignment explanation
Indices: 4229025--4229132 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
4229015 TGGTACAAAT
4229025 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
4229051 TGATAATGGATTTGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
4229077 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
4229103 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
4229129 TGAT
1 TGAT
4229133 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.31, C:0.07, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:4231960 original size:18 final size:17
Alignment explanation
Indices: 4231927--4231965 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
4231917 TTGTATAAAT
4231927 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
4231945 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
4231962 TGTG
1 TGTG
4231966 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:4232060 original size:75 final size:75
Alignment explanation
Indices: 4231970--4232117 Score: 287
Period size: 75 Copynumber: 2.0 Consensus size: 75
4231960 AATGTGGAAG
4231970 GAAAGTTGTTCATGAATTATTCAAGTGATAAAGTGTTGAAAATAAAGTGTTAAGTGTAAATTCCC
1 GAAAGTTGTTCATGAATTATTCAAGTGATAAAGTGTTGAAAATAAAGTGTTAAGTGTAAATTCCC
4232035 GGTTGAACAT
66 GGTTGAACAT
*
4232045 GAAAGTTGTTCATGAATTATTCAAGTGATAAAGTGTTGAAAATAAAGTGTTAAGTGTAAATTCTC
1 GAAAGTTGTTCATGAATTATTCAAGTGATAAAGTGTTGAAAATAAAGTGTTAAGTGTAAATTCCC
4232110 GGTTGAAC
66 GGTTGAAC
4232118 TTAGGAATAG
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
75 72 1.00
ACGTcount: A:0.37, C:0.07, G:0.22, T:0.34
Consensus pattern (75 bp):
GAAAGTTGTTCATGAATTATTCAAGTGATAAAGTGTTGAAAATAAAGTGTTAAGTGTAAATTCCC
GGTTGAACAT
Found at i:4232293 original size:23 final size:23
Alignment explanation
Indices: 4232266--4232363 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
4232256 AGTGTTATTG
4232266 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
4232289 TTCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
4232312 -CCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
4232334 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
4232357 ATCAGTG
1 ATCAGTG
4232364 TGGCACTTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:4232332 original size:45 final size:45
Alignment explanation
Indices: 4232268--4232356 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
4232258 TGTTATTGAT
* *
4232268 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
4232313 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
4232357 ATCAGTGTGG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.31
Consensus pattern (45 bp):
CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
Found at i:4237517 original size:18 final size:17
Alignment explanation
Indices: 4237484--4237522 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
4237474 TTGTATAAAT
4237484 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
4237502 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
4237519 TGTG
1 TGTG
4237523 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:4237617 original size:75 final size:75
Alignment explanation
Indices: 4237527--4237674 Score: 287
Period size: 75 Copynumber: 2.0 Consensus size: 75
4237517 AATGTGGAAG
4237527 GAAAGTTGTTCATGAATTATTCAAGTGATAAAGTGTTGAAAATAAAGTGTTAAGTGTAAATTCCC
1 GAAAGTTGTTCATGAATTATTCAAGTGATAAAGTGTTGAAAATAAAGTGTTAAGTGTAAATTCCC
4237592 GGTTGAACAT
66 GGTTGAACAT
*
4237602 GAAAGTTGTTCATGAATTATTCAAGTGATAAAGTGTTGAAAATAAAGTGTTAAGTGTAAATTCTC
1 GAAAGTTGTTCATGAATTATTCAAGTGATAAAGTGTTGAAAATAAAGTGTTAAGTGTAAATTCCC
4237667 GGTTGAAC
66 GGTTGAAC
4237675 TTAGGAATAG
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
75 72 1.00
ACGTcount: A:0.37, C:0.07, G:0.22, T:0.34
Consensus pattern (75 bp):
GAAAGTTGTTCATGAATTATTCAAGTGATAAAGTGTTGAAAATAAAGTGTTAAGTGTAAATTCCC
GGTTGAACAT
Found at i:4237850 original size:23 final size:23
Alignment explanation
Indices: 4237823--4237920 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
4237813 AGTGTTATTG
4237823 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
4237846 TTCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
4237869 -CCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
4237891 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
4237914 ATCAGTG
1 ATCAGTG
4237921 TGGCACTTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:4237889 original size:45 final size:45
Alignment explanation
Indices: 4237825--4237913 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
4237815 TGTTATTGAT
* *
4237825 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
4237870 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
4237914 ATCAGTGTGG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.31
Consensus pattern (45 bp):
CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
Found at i:4245094 original size:26 final size:26
Alignment explanation
Indices: 4245065--4245172 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
4245055 TGGTACAAAT
4245065 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
4245091 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
4245117 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
4245143 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
4245169 TGAT
1 TGAT
4245173 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:4248432 original size:44 final size:45
Alignment explanation
Indices: 4248373--4248484 Score: 118
Period size: 45 Copynumber: 2.5 Consensus size: 45
4248363 TATCTCCCAA
* * *
4248373 AAGTGGCAGTGGAGCAGATTGAAGCCA-TAAGTCTTATTTCCCTG
1 AAGTTGCAGTGGAGCAGATTGAAGACAGTAACTCTTATTTCCCTG
* * * * * *
4248417 AAGTTGCAGCGGAGCAGACTAAAGATAGTGACTCTTGTTTCCCTG
1 AAGTTGCAGTGGAGCAGATTGAAGACAGTAACTCTTATTTCCCTG
* *
4248462 AAGTTGCAGTGGAACATATTGAA
1 AAGTTGCAGTGGAGCAGATTGAA
4248485 ACTATAAATA
Statistics
Matches: 53, Mismatches: 14, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
44 21 0.40
45 32 0.60
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (45 bp):
AAGTTGCAGTGGAGCAGATTGAAGACAGTAACTCTTATTTCCCTG
Found at i:4248571 original size:45 final size:45
Alignment explanation
Indices: 4248495--4248582 Score: 104
Period size: 45 Copynumber: 2.0 Consensus size: 45
4248485 ACTATAAATA
** * *
4248495 AACAGATCTTATCTTTCTGAAAATGCTGTGGAGCAGATTGAAGAT
1 AACAGATCTTATCTCCCTGAAAATGCAGTGGAGCAGATCGAAGAT
* ** *
4248540 AACAGGTCTTATCTCCCTGAAGCTGCAGTGGAGTAGATCGAAG
1 AACAGATCTTATCTCCCTGAAAATGCAGTGGAGCAGATCGAAG
4248583 TCACCATCCT
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 35 1.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (45 bp):
AACAGATCTTATCTCCCTGAAAATGCAGTGGAGCAGATCGAAGAT
Found at i:4248807 original size:44 final size:44
Alignment explanation
Indices: 4248759--4248845 Score: 102
Period size: 44 Copynumber: 2.0 Consensus size: 44
4248749 GAATAAATTG
* *
4248759 AAGCTACAAGTCTAATCTCACTGAGGTTGCAGTGGAGCAGATTA
1 AAGCTACAAGTCTAATCTCACTGAAGTTACAGTGGAGCAGATTA
** * ** *
4248803 AAGCTATGAGTCTAGTCTTTCTGAAGTTACAGTGGAGTAGATT
1 AAGCTACAAGTCTAATCTCACTGAAGTTACAGTGGAGCAGATT
4248846 GACGCAATAA
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
44 35 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (44 bp):
AAGCTACAAGTCTAATCTCACTGAAGTTACAGTGGAGCAGATTA
Found at i:4256195 original size:21 final size:22
Alignment explanation
Indices: 4256160--4256209 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
4256150 TGTCCACTTG
* *
4256160 GTTTTATTTTTATTTTAATTGA-
1 GTTTT-TTTTAATTTCAATTGAT
*
4256182 GTTTTTTTTAATTTCAATTTAT
1 GTTTTTTTTAATTTCAATTGAT
4256204 GTTTTT
1 GTTTTT
4256210 ATTCTTTATG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 13 0.54
22 11 0.46
ACGTcount: A:0.20, C:0.02, G:0.08, T:0.70
Consensus pattern (22 bp):
GTTTTTTTTAATTTCAATTGAT
Found at i:4263165 original size:39 final size:39
Alignment explanation
Indices: 4263111--4263187 Score: 127
Period size: 39 Copynumber: 2.0 Consensus size: 39
4263101 AGAGCTGGAT
* *
4263111 GAATTTGAACCAGACAAGCTTGACCCAGCCTGTTCACAA
1 GAATTTGAACCAGACAAACTTGACCCAGCCTGGTCACAA
*
4263150 GAATTTGAACCAGACAAATTTGACCCAGCCTGGTCACA
1 GAATTTGAACCAGACAAACTTGACCCAGCCTGGTCACA
4263188 TGACACCTGT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.34, C:0.27, G:0.18, T:0.21
Consensus pattern (39 bp):
GAATTTGAACCAGACAAACTTGACCCAGCCTGGTCACAA
Found at i:4277633 original size:3 final size:3
Alignment explanation
Indices: 4277293--4277613 Score: 131
Period size: 3 Copynumber: 106.0 Consensus size: 3
4277283 AAGAAAAACC
* * * * * * *
4277293 ATA ATA ATA ATA GTA TTA GTT ATA ATA AAA ATA AAA ATA ATA CTA A-A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * *
4277340 TATA ATA ATA GTG ATA TTCA A-A A-A ATA ATA GCT- ATA AAA AAA ATA
1 -ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA -ATA ATA ATA ATA ATA
** * * **
4277385 ATA ACC ATA ACA ATAA AGA ATA ATA GCA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * *
4277431 ATA ATA ATA ATA ATA ACA ATA ATGA A-A ACA AAA ATA TTA AGTT ACA
1 ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA A-TA ATA
* * * * * *
4277477 ATA GTA A-A ATA ATA ATA GTG ATA ATA ATA GT- ATA TTA GATA ACA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA
* * * *
4277521 ATA CTA A-G ATA ATA AGTA ATA ATA ATA GAGT- ATAA ATA ATA GTT ATGA
1 ATA ATA ATA ATA ATA A-TA ATA ATA ATA -A-TA AT-A ATA ATA ATA AT-A
*
4277569 A-A ATA ATA ACA AGTA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
4277614 GTGACGATAG
Statistics
Matches: 230, Mismatches: 66, Indels: 44
0.68 0.19 0.13
Matches are distributed among these distances:
2 15 0.07
3 194 0.84
4 20 0.09
5 1 0.00
ACGTcount: A:0.60, C:0.04, G:0.07, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:4277807 original size:23 final size:23
Alignment explanation
Indices: 4277756--4277801 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
4277746 GTTAATAACA
4277756 ATAATAATAATATGTAAAAATAG
1 ATAATAATAATATGTAAAAATAG
*
4277779 AAAATAATAATATGGTAAAAATA
1 ATAATAATAATAT-GTAAAAATA
4277802 TTAATATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 12 0.57
24 9 0.43
ACGTcount: A:0.63, C:0.00, G:0.09, T:0.28
Consensus pattern (23 bp):
ATAATAATAATATGTAAAAATAG
Found at i:4279537 original size:44 final size:44
Alignment explanation
Indices: 4279474--4279842 Score: 212
Period size: 43 Copynumber: 8.5 Consensus size: 44
4279464 AATTTCCAGC
* *
4279474 CTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCGCCTTCGAT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGGCCCATCACCTTCGAT
* *
4279518 CTGTTTCCCTACTGCTTAGGGGTTTAAGGCCCATCACCTTTGAT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGGCCCATCACCTTCGAT
* * ** * ** *
4279562 CTGTTTCCCTACTGCTTAGGGTGATAAGATCTAT-AAATTC-AGC
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGGCCCATCACCTTCGA-T
* ***** ** *
4279605 CTGTTACCCTACTGCTTAGGGGGTTAAGATTTGT-AAATTC-AGC
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGGCCCATCACCTTCGA-T
* ** ** ** *
4279648 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGT-AAATTC-AGC
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGGCCCATCACCTTCGA-T
* * * *
4279691 CTGTTACCCTACTGCCTAGGGGTTTAAGGCCCACCACCTTCGAT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGGCCCATCACCTTCGAT
* * * ** ** * ** * *
4279735 CTGTTTCTCTACTGCTTAGGGTGATAAGATCTGTAAATTTAG-C
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGGCCCATCACCTTCGAT
* * * *
4279778 CTATTACCCTACTACTTAGGGGTTTAAGGCCCATCACCTTCGAT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGGCCCATCACCTTCGAT
*
4279822 CTGTTTCCCTACTACTTAGGG
1 CTGTTTCCCTACTGCTTAGGG
4279843 AATTAAGATC
Statistics
Matches: 257, Mismatches: 64, Indels: 8
0.78 0.19 0.02
Matches are distributed among these distances:
42 1 0.00
43 137 0.53
44 118 0.46
45 1 0.00
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.34
Consensus pattern (44 bp):
CTGTTTCCCTACTGCTTAGGGGGTTAAGGCCCATCACCTTCGAT
Found at i:4279625 original size:87 final size:87
Alignment explanation
Indices: 4279518--4279895 Score: 510
Period size: 87 Copynumber: 4.4 Consensus size: 87
4279508 CGCCTTCGAT
* *
4279518 CTGTTTCCCTACTGCTTAGGGGTTTAAGGCCCATCACCTTTGATCTGTTTCCCTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACCTTCGATCTGTTTCCCTACTGCTTAGGG
*
4279583 TGATAAGATCTATAAATTCAGC
66 TGATAAGATCTGTAAATTCAGC
* ***** ** * *
4279605 CTGTTACCCTACTGCTTAGGGGGTTAAGATTTGT-AAATTC-AGCCTGTTACCCTACTGCTTAGG
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACCTTCGA-TCTGTTTCCCTACTGCTTAGG
* *
4279668 GGGTTAAGATCTGTAAATTCAGC
65 GTGATAAGATCTGTAAATTCAGC
* * *
4279691 CTGTTACCCTACTGCCTAGGGGTTTAAGGCCCACCACCTTCGATCTGTTTCTCTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACCTTCGATCTGTTTCCCTACTGCTTAGGG
*
4279756 TGATAAGATCTGTAAATTTAGC
66 TGATAAGATCTGTAAATTCAGC
* * *
4279778 CTATTACCCTACTACTTAGGGGTTTAAGGCCCATCACCTTCGATCTGTTTCCCTACTACTTAGGG
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACCTTCGATCTGTTTCCCTACTGCTTAGGG
*
4279843 -AATTAAGATCTGTAAATTCAGC
66 TGA-TAAGATCTGTAAATTCAGC
4279865 CTGTTACCCTACTGCTTAGGGGTTTAAGGCC
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGCC
4279896 TGTGGATTTA
Statistics
Matches: 246, Mismatches: 41, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
85 1 0.00
86 69 0.28
87 175 0.71
88 1 0.00
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.34
Consensus pattern (87 bp):
CTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACCTTCGATCTGTTTCCCTACTGCTTAGGG
TGATAAGATCTGTAAATTCAGC
Found at i:4279892 original size:43 final size:43
Alignment explanation
Indices: 4279562--4279892 Score: 292
Period size: 43 Copynumber: 7.7 Consensus size: 43
4279552 CACCTTTGAT
* * *
4279562 CTGTTTCCCTACTGCTTA-GGGTGATAAGATCTATAAATTCAGC
1 CTGTTACCCTACTGCTTAGGGGT-TTAAGATCTGTAAATTCAGC
* *
4279605 CTGTTACCCTACTGCTTAGGGGGTTAAGATTTGTAAATTCAGC
1 CTGTTACCCTACTGCTTAGGGGTTTAAGATCTGTAAATTCAGC
*
4279648 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
1 CTGTTACCCTACTGCTTAGGGGTTTAAGATCTGTAAATTCAGC
* ** *** ** *
4279691 CTGTTACCCTACTGCCTAGGGGTTTAAGGCCCACCACCTTC-GAT
1 CTGTTACCCTACTGCTTAGGGGTTTAA-GATCTGTAAATTCAG-C
* * * *
4279735 CTGTTTCTCTACTGCTTA-GGGTGATAAGATCTGTAAATTTAGC
1 CTGTTACCCTACTGCTTAGGGGT-TTAAGATCTGTAAATTCAGC
* * ** ** ** *
4279778 CTATTACCCTACTACTTAGGGGTTTAAGGCCCATCACCTTC-GAT
1 CTGTTACCCTACTGCTTAGGGGTTTAAGATCTGT-AAATTCAG-C
* * **
4279822 CTGTTTCCCTACTACTTAGGGAATTAAGATCTGTAAATTCAGC
1 CTGTTACCCTACTGCTTAGGGGTTTAAGATCTGTAAATTCAGC
4279865 CTGTTACCCTACTGCTTAGGGGTTTAAG
1 CTGTTACCCTACTGCTTAGGGGTTTAAG
4279893 GCCTGTGGAT
Statistics
Matches: 222, Mismatches: 57, Indels: 18
0.75 0.19 0.06
Matches are distributed among these distances:
43 160 0.72
44 62 0.28
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.34
Consensus pattern (43 bp):
CTGTTACCCTACTGCTTAGGGGTTTAAGATCTGTAAATTCAGC
Found at i:4281727 original size:30 final size:30
Alignment explanation
Indices: 4281689--4281803 Score: 185
Period size: 30 Copynumber: 3.8 Consensus size: 30
4281679 ACTTTTCTCA
*
4281689 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
*
4281719 ATTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
* *
4281749 ACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
*
4281779 ACTAGCCACACCTTCTCCACCACCA
1 ACTAGCCACACCTTTTCCACCACCA
4281804 CTTGTACCTA
Statistics
Matches: 77, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 77 1.00
ACGTcount: A:0.25, C:0.49, G:0.03, T:0.23
Consensus pattern (30 bp):
ACTAGCCACACCTTTTCCACCACCAACTCC
Found at i:4282326 original size:23 final size:23
Alignment explanation
Indices: 4282289--4282418 Score: 74
Period size: 23 Copynumber: 5.5 Consensus size: 23
4282279 CCTTTTTTGT
4282289 TATTAT-TATATTTCTTAATATTA
1 TATTATATATA-TTCTTAATATTA
* *
4282312 TATTATATATATTCTT-TTAATA
1 TATTATATATATTCTTAATATTA
**
4282334 TATTAGGTATATT-TTAA-ATTCTA
1 TATTATATATATTCTTAATA-T-TA
* *
4282357 TATTACGTATATATATTTTATACTATTT
1 TATTA--TATATAT-TCTTA-A-TATTA
4282385 TATT-TATATA-TCTTTAATATTA
1 TATTATATATATTC-TTAATATTA
*
4282407 TATTATTTATAT
1 TATTATATATAT
4282419 ATATATTTTT
Statistics
Matches: 81, Mismatches: 12, Indels: 27
0.68 0.10 0.22
Matches are distributed among these distances:
21 3 0.04
22 23 0.28
23 25 0.31
24 7 0.09
25 11 0.14
26 1 0.01
27 3 0.04
28 6 0.07
29 1 0.01
30 1 0.01
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.58
Consensus pattern (23 bp):
TATTATATATATTCTTAATATTA
Found at i:4282382 original size:25 final size:25
Alignment explanation
Indices: 4282303--4282506 Score: 84
Period size: 25 Copynumber: 8.2 Consensus size: 25
4282293 ATTATATTTC
* * *
4282303 TTAATATTATATTATATATAT-TCT
1 TTAATACTATATTATGTATATATAT
* *
4282327 TT--TAATATATTAGGTATAT-T-T
1 TTAATACTATATTATGTATATATAT
* * *
4282348 TAAATTCTATATTACGTATATATAT
1 TTAATACTATATTATGTATATATAT
* * * *
4282373 TTTATACTATTTTATTTATATATCT
1 TTAATACTATATTATGTATATATAT
* *
4282398 TTAATATTATATTATTTATATATATATTTT
1 TTAATACTATATTA--TGTATATATA---T
** * *
4282428 TCTACATGTTATCTTATGTATATAT-C
1 T-TA-ATACTATATTATGTATATATAT
* *
4282454 TT-A-ACTATATTATATATATATTT
1 TTAATACTATATTATGTATATATAT
* *
4282477 TTAACACTATATTATGTACATAT-T
1 TTAATACTATATTATGTATATATAT
4282501 TTAATA
1 TTAATA
4282507 TTATCACGTA
Statistics
Matches: 135, Mismatches: 31, Indels: 28
0.70 0.16 0.14
Matches are distributed among these distances:
21 2 0.01
22 29 0.21
23 17 0.13
24 10 0.07
25 47 0.35
26 1 0.01
27 8 0.06
30 10 0.07
31 2 0.01
32 9 0.07
ACGTcount: A:0.35, C:0.06, G:0.03, T:0.55
Consensus pattern (25 bp):
TTAATACTATATTATGTATATATAT
Found at i:4282681 original size:16 final size:15
Alignment explanation
Indices: 4282657--4282704 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
4282647 TTATTATTAT
*
4282657 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
4282673 TATTTTAATATTTTA
1 TATTTTAATATTTTA
4282688 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
4282704 T
1 T
4282705 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:4282692 original size:7 final size:8
Alignment explanation
Indices: 4282657--4282708 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
4282647 TTATTATTAT
*
4282657 TATTCTAA
1 TATTTTAA
*
4282665 TATTTTGA
1 TATTTTAA
4282673 TATTTTAA
1 TATTTTAA
4282681 TATTTT-A
1 TATTTTAA
4282688 TATTTTATA
1 TATTTTA-A
*
4282697 TATTTTAT
1 TATTTTAA
4282705 TATT
1 TATT
4282709 CACATCATTG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:4290372 original size:69 final size:71
Alignment explanation
Indices: 4290196--4290372 Score: 214
Period size: 72 Copynumber: 2.5 Consensus size: 71
4290186 CTTTCCAAGG
* ** * *
4290196 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAAGTTTA
*
4290261 TTTTTT
66 TGTTTT
* ** *
4290267 CAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTT-AGTTT
1 -AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAAGTTT
4290331 ATGTTTT
65 ATGTTTT
** *
4290338 -AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
4290373 TTTAATTTTT
Statistics
Matches: 91, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
69 31 0.34
71 9 0.10
72 51 0.56
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (71 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAAGTTTA
TGTTTT
Found at i:4290491 original size:71 final size:72
Alignment explanation
Indices: 4290376--4290578 Score: 225
Period size: 79 Copynumber: 2.8 Consensus size: 72
4290366 TAAGCCTTTT
*
4290376 AATTTTTGTTTTTC-AAAATCAACTCATATTGCT-AGAAGTGAGTTGAGCCTCAAG-AC-GCTGA
1 AATTTTTGTTTTTCAAAAATCAACTCATATTG-TGAGAGGTGAGTTGAGCCTC-AGTACAGCTGA
4290437 GGTAATTTC
64 GGTAATTTC
* *
4290446 AATTTTTGTTTGTCAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGGTTCACATGCTG
1 AATTTTTGTTTTTCAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAG-T-ACA-GCTG
*
4290511 AGGTATTTTC
63 AGGTAATTTC
* * * *
4290521 AATTTCTGTTTTTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 AATTTTTG-TTTTT---CAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAG
4290579 ATTACACACT
Statistics
Matches: 112, Mismatches: 10, Indels: 13
0.83 0.07 0.10
Matches are distributed among these distances:
70 15 0.13
71 34 0.30
73 2 0.02
75 20 0.18
76 4 0.04
79 37 0.33
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.36
Consensus pattern (72 bp):
AATTTTTGTTTTTCAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGTACAGCTGAGG
TAATTTC
Found at i:4290567 original size:79 final size:71
Alignment explanation
Indices: 4290390--4290573 Score: 208
Period size: 71 Copynumber: 2.5 Consensus size: 71
4290380 TTTGTTTTTC
* * *
4290390 AAAATCAACTCATATTGCTAGAAGTGAGTTGAGCCTCAAGACGCTGAGGTAATTTCAATTTTTGT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACGCTGAGGTAATTTCAATTTCTGT
*
4290455 TTGTCA
66 TTGTAA
* * *
4290461 AAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG---AC--GCTGAGGTAATTTCAATT
*
4290525 TCTGTTTTTTAAAAA
61 TCTG-TTTGT---AA
4290540 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
4290574 TTCAGATTAC
Statistics
Matches: 95, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
70 1 0.01
71 34 0.36
73 2 0.02
75 20 0.21
76 4 0.04
79 34 0.36
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33
Consensus pattern (71 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACGCTGAGGTAATTTCAATTTCTGT
TTGTAA
Found at i:4290813 original size:72 final size:73
Alignment explanation
Indices: 4290732--4290873 Score: 234
Period size: 72 Copynumber: 2.0 Consensus size: 73
4290722 TCAAAATCAG
*
4290732 CTCATATTGCAAGAGGTGAGTTGAGCCTCGAGG-CACGCTGAGGTATTTTCAATTTTTG-TGTTT
1 CTCATATTGCAAGAGGTGAGTTGAGCCTC-AGGACACGCTGAGGTATTTTCAATTTTCGTTGTTT
4290795 TAATTTCAA
65 TAATTTCAA
* *
4290804 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTTTTTT
1 CTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTGTTTT
4290869 AATTT
66 AATTT
4290874 ATGTTTCAAA
Statistics
Matches: 65, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
71 3 0.05
72 52 0.80
73 10 0.15
ACGTcount: A:0.23, C:0.15, G:0.23, T:0.39
Consensus pattern (73 bp):
CTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTGTTTT
AATTTCAA
Found at i:4291052 original size:73 final size:73
Alignment explanation
Indices: 4290865--4291449 Score: 561
Period size: 74 Copynumber: 7.8 Consensus size: 73
4290855 ATTTTCGTTT
* ** * *
4290865 TTTTAATTTATGTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCA--AGACG
1 TTTTAATTTCTG-TTCATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
4290928 CTGAGGTAA
65 CTGAGGTAA
* * ** *
4290937 TTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACAC
1 TTTTAATTTCTGTTCATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
**
4291002 TGAGGTGG
66 TGAGGTAA
* * * * *
4291010 TTTTAATTTATGTTCATCAAAAATTAGCTCATATTGCAAGAGGTGAGTTGAGCCT-TGGCTCACA
1 TTTTAATTTCTGTTCATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACA
4291074 CGCTGAGGT-A
63 CGCTGAGGTAA
* *
4291084 TTTTCAATTTCTAGTTTCAATTTCTGTTTTTCAAAATCGACTCATATTGCGAGAGGTGAGTTGAG
1 TTTT-AATTTCT-G-TTC-A--TC-------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
*
4291149 CCTCGGGACACGCTGAGGTAA
53 CCTCAGGACACGCTGAGGTAA
* ** * *
4291170 TTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCTTC-GGCTCACA
1 TTTTAATTTCTGTTCATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACA
* *
4291234 TGCTGAGGT-C
63 CGCTGAGGTAA
** *
4291244 TTTTCAATTTCTGTTCGTAAAAAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACA
1 TTTT-AATTTCTGTTC--ATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
4291309 CGCTGAGGTAA
63 CGCTGAGGTAA
* ** *
4291320 TTTCAATTTCTGTTGTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
1 TTTTAATTTCTGTTCAT-CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
*
4291385 CTGAGGTAT
65 CTGAGGTAA
** *
4291394 TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGATGTGAGTTGAGCCT
1 TTTT-AATTTCTGTTCATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
4291450 TGGGTTCACA
Statistics
Matches: 426, Mismatches: 57, Indels: 58
0.79 0.11 0.11
Matches are distributed among these distances:
71 40 0.09
72 14 0.03
73 92 0.22
74 100 0.23
75 71 0.17
76 4 0.01
77 38 0.09
78 3 0.01
80 4 0.01
83 2 0.00
84 1 0.00
85 19 0.04
86 4 0.01
87 32 0.08
88 2 0.00
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.34
Consensus pattern (73 bp):
TTTTAATTTCTGTTCATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
TGAGGTAA
Found at i:4291129 original size:160 final size:159
Alignment explanation
Indices: 4290937--4291409 Score: 567
Period size: 160 Copynumber: 3.0 Consensus size: 159
4290927 GCTGAGGTAA
* * *
4290937 TTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACAC
1 TTTCAATTTCTGTTTATC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
** * * * *
4291002 TGAGGTGGTTTTAATTTATGTTCATCAAAAATTAGCTCATATTGCAAGAGGTGAGTTGAGCCTTG
65 TGAGGTAATTTCAATTTCTGTTCATCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTTG
4291067 GCTCACACGCTGAGGTATTTTCAATTTCTAG
130 GCTCACACGCTGAGGTATTTTCAATTTCT-G
* * *
4291098 TTTCAATTTCTGTTTTTCAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCT
1 TTTCAATTTCTGTTTATCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
**
4291163 GAGGTAATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAG-CTTCG
66 GAGGTAATTTCAATTTCTGTTCATCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTT-G
* *
4291227 GCTCACATGCTGAGGTCTTTTCAATTTCTG
130 GCTCACACGCTGAGGTATTTTCAATTTCTG
* ** *
4291257 -------TTC-G-TAAAAAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCT
1 TTTCAATTTCTGTTTATCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
** * * *
4291313 GAGGTAATTTCAATTTCTGTTGTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
66 GAGGTAATTTCAATTTCTGTTCAT-CAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCT-T
*
4291378 GG---ACACGCTGAGGTATTTTTAAATTTCTG
129 GGCTCACACGCTGAGGTA-TTTTCAATTTCTG
4291407 TTT
1 TTT
4291410 TTCAAAAATC
Statistics
Matches: 274, Mismatches: 30, Indels: 24
0.84 0.09 0.07
Matches are distributed among these distances:
149 11 0.04
150 79 0.29
151 34 0.12
152 7 0.03
159 4 0.01
160 123 0.45
161 16 0.06
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.34
Consensus pattern (159 bp):
TTTCAATTTCTGTTTATCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
GAGGTAATTTCAATTTCTGTTCATCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTTGG
CTCACACGCTGAGGTATTTTCAATTTCTG
Found at i:4291172 original size:233 final size:225
Alignment explanation
Indices: 4290724--4291449 Score: 805
Period size: 233 Copynumber: 3.2 Consensus size: 225
4290714 CTACTTTTTC
* * * *
4290724 AAAATCAGCTCATATTGCAAGAGGTGAGTTGAGCCTCGAGGCACGCTGAGGTATTTTCAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGGCACACTGAGGTATTTTCAATTTAT
** * *
4290789 GTGT--TTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTT
65 GT-TCATAAAAATT-AACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTT
* *
4290852 TCAATTTTCGTTTTTTTAATTTATGTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGA
128 TCAA-TTTC---TGTTTAATTT-TGTTT--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* * *
4290917 GCCTC-AAGACGCTGAGGTAATTTCAATTTTTGTTTGTCA
186 GCCTCGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCA
*
4290956 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTGGTTTT-AATTTA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-CACACTGAGGT-ATTTTCAATTTA
* *
4291020 TGTTCATCAAAAATTAGCTCATATTGCAAGAGGTGAGTTGAGCCT-TGGCTCACACGCTGAGGTA
64 TGTTCAT-AAAAATTAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTA
*** *
4291084 TTTTCAATTTCTAGTTTCAATTTCTGTTTTTCAAAATCGACTCATATTGCGAGAGGTGAGTTGAG
125 TTTTCAATTTCT-GTTT-AATTT-TGTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
4291149 CCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCA
187 CCTC-GGACACGCTGAGGTAATTTCAATTTCTGTTTGTCA
* * *
4291189 AAAATTAACTCATATTGCGAGAGGTGAGTTGAGCTTC-GGCTCACATGCTGAGGTCTTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--CACA--CTGAGGTATTTTCAATT
* * * *
4291253 TCTGTTCGTAAAAAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
62 TATGTTC---ATAAAAATTAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
*
4291318 AATTTCAATTTCTG-------TTG-TTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
124 ATTTTCAATTTCTGTTTAATTTTGTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
* * *
4291375 TCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTCA
189 TC-GGACACGCTGAGGTA-ATTTCAATTTCTGTTTGTCA
*
4291414 AAAATCAACTCATATTGCGAGATGTGAGTTGAGCCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
4291450 TGGGTTCACA
Statistics
Matches: 430, Mismatches: 43, Indels: 49
0.82 0.08 0.09
Matches are distributed among these distances:
224 53 0.12
225 52 0.12
226 1 0.00
231 40 0.09
232 60 0.14
233 113 0.26
234 13 0.03
235 61 0.14
237 34 0.08
238 3 0.01
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (225 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACACTGAGGTATTTTCAATTTATG
TTCATAAAAATTAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCA
ATTTCTGTTTAATTTTGTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACA
CGCTGAGGTAATTTCAATTTCTGTTTGTCA
Found at i:4291403 original size:150 final size:146
Alignment explanation
Indices: 4291116--4291449 Score: 465
Period size: 150 Copynumber: 2.2 Consensus size: 146
4291106 TCTGTTTTTC
* *
4291116 AAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
* * * *
4291181 GTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCTTCGGCTCACATGCTGAGGTCTT
66 GTTTGTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--CACACGCTGAGGTCTT
*
4291246 TTCAATTTCTGTTCGTAAAA
129 TTAAATTTCTGTT--TAAAA
*
4291266 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
*
4291331 G-TTGTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGCTGAGGTAT
66 GTTTG-T-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCACACGCTGAGGT-C
***
4291394 TTTTAAATTTCTGTTTTTCA
127 TTTTAAATTTCTGTTTAAAA
*
4291414 AAAATCAACTCATATTGCGAGATGTGAGTTGAGCCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
4291450 TGGGTTCACA
Statistics
Matches: 166, Mismatches: 14, Indels: 10
0.87 0.07 0.05
Matches are distributed among these distances:
148 36 0.22
149 14 0.08
150 78 0.47
151 36 0.22
152 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.32
Consensus pattern (146 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
GTTTGTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCACACGCTGAGGTCTTTT
AAATTTCTGTTTAAAA
Found at i:4292197 original size:30 final size:30
Alignment explanation
Indices: 4292161--4292335 Score: 296
Period size: 30 Copynumber: 5.8 Consensus size: 30
4292151 ACTTTTCTCA
4292161 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
* *
4292191 ACTAGCCACACCTTTTCCACCACCCACTCC
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
*
4292221 ACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
4292251 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
*
4292281 ACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
* *
4292311 ACTAGCCACACCTTCTCCACCACCA
1 ACTAGCCACTCCTTTTCCACCACCA
4292336 CTTGTACCTA
Statistics
Matches: 135, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 135 1.00
ACGTcount: A:0.24, C:0.50, G:0.03, T:0.23
Consensus pattern (30 bp):
ACTAGCCACTCCTTTTCCACCACCAACTCC
Found at i:4292855 original size:23 final size:23
Alignment explanation
Indices: 4292818--4292947 Score: 74
Period size: 23 Copynumber: 5.5 Consensus size: 23
4292808 CCTTTTTTGT
4292818 TATTAT-TATATTTCTTAATATTA
1 TATTATATATA-TTCTTAATATTA
* *
4292841 TATTATATATATTCTT-TTAATA
1 TATTATATATATTCTTAATATTA
**
4292863 TATTAGGTATATT-TTAA-ATTCTA
1 TATTATATATATTCTTAATA-T-TA
* *
4292886 TATTACGTATATATATTTTATACTATTT
1 TATTA--TATATAT-TCTTA-A-TATTA
4292914 TATT-TATATA-TCTTTAATATTA
1 TATTATATATATTC-TTAATATTA
*
4292936 TATTATTTATAT
1 TATTATATATAT
4292948 ATATATATTT
Statistics
Matches: 81, Mismatches: 12, Indels: 27
0.68 0.10 0.22
Matches are distributed among these distances:
21 3 0.04
22 23 0.28
23 25 0.31
24 7 0.09
25 11 0.14
26 1 0.01
27 3 0.04
28 6 0.07
29 1 0.01
30 1 0.01
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.58
Consensus pattern (23 bp):
TATTATATATATTCTTAATATTA
Found at i:4292911 original size:25 final size:24
Alignment explanation
Indices: 4292824--4293058 Score: 99
Period size: 25 Copynumber: 9.5 Consensus size: 24
4292814 TTGTTATTAT
*
4292824 TATATTTCTTAATATTATATTA--TA
1 TATATTT-TT-ATACTATATTATGTA
* *
4292848 TATATTCTTT-TAATATATTAGGTA
1 TATATT-TTTATACTATATTATGTA
** * *
4292872 TAT-TTTAAATTCTATATTACGTA
1 TATATTTTTATACTATATTATGTA
* *
4292895 TATATATTTTATACTATTTTATTTA
1 TATAT-TTTTATACTATATTATGTA
* * *
4292920 TATATCTTTAATATTATATTATTTATA
1 TATAT-TTTTATACTATATTA--TGTA
* *
4292947 TATATATATTTCTACATGTTATCTTATGTA
1 TATAT-T-TTTATAC----TATATTATGTA
*
4292977 TATA-TCTTA-ACTATATTATGTA
1 TATATTTTTATACTATATTATGTA
*
4292999 TATATTTTTAACACTATATTATGTA
1 TATATTTTT-ATACTATATTATGTA
* * *
4293024 CATATTTTTA-A-TATTATCACGTA
1 TATATTTTTATACTA-TATTATGTA
*
4293047 TTTATTTTTATA
1 TATATTTTTATA
4293059 TATGTACATA
Statistics
Matches: 161, Mismatches: 32, Indels: 36
0.70 0.14 0.16
Matches are distributed among these distances:
22 26 0.16
23 35 0.22
24 17 0.11
25 52 0.32
26 2 0.01
27 11 0.07
28 5 0.03
30 7 0.04
32 6 0.04
ACGTcount: A:0.34, C:0.07, G:0.03, T:0.56
Consensus pattern (24 bp):
TATATTTTTATACTATATTATGTA
Found at i:4293204 original size:16 final size:15
Alignment explanation
Indices: 4293148--4293227 Score: 74
Period size: 16 Copynumber: 5.1 Consensus size: 15
4293138 TTTTTATTTC
*
4293148 TATTTT-ATTTTTTA
1 TATTTTAATATTTTA
4293162 T-TTTTCAATATTAATTA
1 TATTTT-AATATT--TTA
*
4293179 TTATTCTAATATTTTGA
1 -TATTTTAATATTTT-A
4293196 TATTTTAATATTTTA
1 TATTTTAATATTTTA
4293211 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
4293227 T
1 T
4293228 TATTCACATC
Statistics
Matches: 55, Mismatches: 3, Indels: 14
0.76 0.04 0.19
Matches are distributed among these distances:
13 4 0.07
14 1 0.02
15 12 0.22
16 24 0.44
17 4 0.07
18 7 0.13
19 3 0.05
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.66
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:4293215 original size:7 final size:8
Alignment explanation
Indices: 4293180--4293231 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
4293170 TATTAATTAT
*
4293180 TATTCTAA
1 TATTTTAA
*
4293188 TATTTTGA
1 TATTTTAA
4293196 TATTTTAA
1 TATTTTAA
4293204 TATTTT-A
1 TATTTTAA
4293211 TATTTTATA
1 TATTTTA-A
*
4293220 TATTTTAT
1 TATTTTAA
4293228 TATT
1 TATT
4293232 CACATCATTG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:4303071 original size:3 final size:3
Alignment explanation
Indices: 4303056--4303489 Score: 160
Period size: 3 Copynumber: 143.7 Consensus size: 3
4303046 GACAATAAAG
* *
4303056 AAT AAT AGA- AAT AAT AAT AAT AAT AAT AAT GAA- AAA AAT ATT AAGT
1 AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AA-T
* * * * * * *
4303102 TAC AAT AGT AA- AAT AAT AAT AGT AAT AAT AAT AGT GAT AAT AAT AGT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* *
4303149 -AT ATT AGAT AAC AAT AAT AA- AAT AAT AAGT AAT AAT AAT AGAGT -AT
1 AAT AAT A-AT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT A-A-T AAT
* * *
4303195 AAAT AAT AGT TAT GAA- AAT AAT AAC AAGT AAT AAT AAT AAT AAT AAT
1 -AAT AAT AAT AAT -AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT
* * * * * *
4303242 AAT AAT AAT AAT AAT AAT AAT AAT AGT GAC GAT AGT AGT AAT AAT -AT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * ** * * * *
4303289 ATT GAT AAT ACAT AAT AGA- AGG AAT AAT AA- AAG GAT -AT AAG GAT
1 AAT AAT AAT A-AT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
4303333 AAT AGT AAT AGT AAT AAC AAT AAT AAT AAAG AAT -AC AAT ACATT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT A-A-T AAT
* * * ** * * *
4303380 GAT AAT GAT AAT GAT ATAT GTT AAT AAC AAT AAT AAT AAT ATGT AAA
1 AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT A-AT AAT
* ** * * * *
4303427 AAT AGAA AAT AAT AAT -AT GGT AAA AAT ATT AAT -AT ATT AAT AAG
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
4303471 AAT AAT AGT AAT AA- AAT AA
1 AAT AAT AAT AAT AAT AAT AA
4303490 GATTAGAATA
Statistics
Matches: 309, Mismatches: 89, Indels: 66
0.67 0.19 0.14
Matches are distributed among these distances:
2 24 0.08
3 252 0.82
4 30 0.10
5 3 0.01
ACGTcount: A:0.59, C:0.02, G:0.09, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:4303460 original size:23 final size:23
Alignment explanation
Indices: 4303409--4303454 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
4303399 GTTAATAACA
4303409 ATAATAATAATATGTAAAAATAG
1 ATAATAATAATATGTAAAAATAG
*
4303432 AAAATAATAATATGGTAAAAATA
1 ATAATAATAATAT-GTAAAAATA
4303455 TTAATATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 12 0.57
24 9 0.43
ACGTcount: A:0.63, C:0.00, G:0.09, T:0.28
Consensus pattern (23 bp):
ATAATAATAATATGTAAAAATAG
Found at i:4304271 original size:5 final size:5
Alignment explanation
Indices: 4304261--4304302 Score: 57
Period size: 5 Copynumber: 8.2 Consensus size: 5
4304251 AATAGGTTCT
* *
4304261 AAATA AAATA AAATA AAATA AAATA ACAAAA AAAGA AAATA A
1 AAATA AAATA AAATA AAATA AAATA A-AATA AAATA AAATA A
4304303 TAAACCTTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
5 29 0.88
6 4 0.12
ACGTcount: A:0.81, C:0.02, G:0.02, T:0.14
Consensus pattern (5 bp):
AAATA
Found at i:4304279 original size:15 final size:16
Alignment explanation
Indices: 4304261--4304302 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
4304251 AATAGGTTCT
*
4304261 AAATAAAATAA-AATA
1 AAATAAAATAACAAAA
4304276 AAATAAAATAACAAAA
1 AAATAAAATAACAAAA
*
4304292 AAAGAAAATAA
1 AAATAAAATAA
4304303 TAAACCTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 11 0.46
16 13 0.54
ACGTcount: A:0.81, C:0.02, G:0.02, T:0.14
Consensus pattern (16 bp):
AAATAAAATAACAAAA
Found at i:4306040 original size:23 final size:23
Alignment explanation
Indices: 4306014--4306057 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
4306004 AGCTTAGGGT
*
4306014 TTCGAAACCAATAAAATTGTGGC
1 TTCGAAACCAATAAAACTGTGGC
4306037 TTCGAAACCAATAAAACTGTG
1 TTCGAAACCAATAAAACTGTG
4306058 TTGAGTTTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.41, C:0.18, G:0.16, T:0.25
Consensus pattern (23 bp):
TTCGAAACCAATAAAACTGTGGC
Found at i:4309314 original size:31 final size:31
Alignment explanation
Indices: 4309277--4309342 Score: 107
Period size: 31 Copynumber: 2.1 Consensus size: 31
4309267 AGTTAAAGAT
4309277 TTAAGATATAATATCATTAGCT-AGTTAAGTC
1 TTAAGATATAATATCATTAGCTGA-TTAAGTC
*
4309308 TTAAGATATAATATCATTAGCTGATTAAGTT
1 TTAAGATATAATATCATTAGCTGATTAAGTC
4309339 TTAA
1 TTAA
4309343 CTCAATTGAT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
31 32 0.97
32 1 0.03
ACGTcount: A:0.39, C:0.08, G:0.12, T:0.41
Consensus pattern (31 bp):
TTAAGATATAATATCATTAGCTGATTAAGTC
Found at i:4313975 original size:34 final size:34
Alignment explanation
Indices: 4313924--4313997 Score: 112
Period size: 34 Copynumber: 2.2 Consensus size: 34
4313914 TCCAAAGTTT
* * *
4313924 TAAACCCTAAACCTTGAATATTGACCTCAAATCC
1 TAAACCCCAAACCTTGAACATTGACCTCAAACCC
*
4313958 TAAACCCCAAACGTTGAACATTGACCTCAAACCC
1 TAAACCCCAAACCTTGAACATTGACCTCAAACCC
4313992 TAAACC
1 TAAACC
4313998 TTAAATATCA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.39, C:0.32, G:0.07, T:0.22
Consensus pattern (34 bp):
TAAACCCCAAACCTTGAACATTGACCTCAAACCC
Found at i:4314721 original size:15 final size:15
Alignment explanation
Indices: 4314685--4314727 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
4314675 CAAAGAAAAA
*
4314685 AAATAATGAGTAAACT
1 AAATTATGAGT-AACT
* *
4314701 ATATTATTAGTAACT
1 AAATTATGAGTAACT
4314716 AAATTATGAGTA
1 AAATTATGAGTA
4314728 GATTTTTATT
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
15 14 0.64
16 8 0.36
ACGTcount: A:0.49, C:0.05, G:0.12, T:0.35
Consensus pattern (15 bp):
AAATTATGAGTAACT
Found at i:4315823 original size:17 final size:17
Alignment explanation
Indices: 4315801--4315857 Score: 51
Period size: 17 Copynumber: 3.2 Consensus size: 17
4315791 AGTCATAAAG
4315801 TTATTAAAAATAAAAAA
1 TTATTAAAAATAAAAAA
* * **
4315818 TTATTAAGATTGTAAAA
1 TTATTAAAAATAAAAAA
4315835 TTATTTAAAAATATAAATAA
1 TTA-TTAAAAATA-AAA-AA
4315855 TTA
1 TTA
4315858 AATAATTACT
Statistics
Matches: 29, Mismatches: 8, Indels: 3
0.73 0.20 0.08
Matches are distributed among these distances:
17 16 0.55
18 6 0.21
19 2 0.07
20 5 0.17
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.39
Consensus pattern (17 bp):
TTATTAAAAATAAAAAA
Found at i:4316426 original size:30 final size:30
Alignment explanation
Indices: 4316390--4316474 Score: 143
Period size: 30 Copynumber: 2.8 Consensus size: 30
4316380 ACTTTTCTCA
4316390 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
*
4316420 ACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
* *
4316450 ACTAGCCACACCTTCTCCACCACCA
1 ACTAGCCACTCCTTTTCCACCACCA
4316475 CTTGTACCTA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 51 1.00
ACGTcount: A:0.25, C:0.49, G:0.04, T:0.22
Consensus pattern (30 bp):
ACTAGCCACTCCTTTTCCACCACCAACTCC
Found at i:4316993 original size:23 final size:23
Alignment explanation
Indices: 4316956--4317037 Score: 62
Period size: 23 Copynumber: 3.5 Consensus size: 23
4316946 TTTTTTTTGT
4316956 TATTAT-TATATTTCTTAATATTA
1 TATTATATATA-TTCTTAATATTA
* *
4316979 TATTATATATATTCTT-TTAATA
1 TATTATATATATTCTTAATATTA
** *
4317001 TATTAGGTATATT-TTAAATTTTA
1 TATTATATATATTCTT-AATATTA
4317024 TATTACGTATATAT
1 TATTA--TATATAT
4317038 ATATATTTTA
Statistics
Matches: 45, Mismatches: 9, Indels: 8
0.73 0.15 0.13
Matches are distributed among these distances:
21 2 0.04
22 15 0.33
23 19 0.42
24 4 0.09
25 5 0.11
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.57
Consensus pattern (23 bp):
TATTATATATATTCTTAATATTA
Found at i:4317038 original size:2 final size:2
Alignment explanation
Indices: 4317031--4317107 Score: 56
Period size: 2 Copynumber: 40.5 Consensus size: 2
4317021 TTATATTACG
* * * * *
4317031 TA TA TA TA TA TA T- TT TA TA CTA T- TT TA TT TA TA TA TC TT TA
1 TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA
*
4317072 -A TA T- TA TA T- TA TT TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4317108 TTCTACATGT
Statistics
Matches: 60, Mismatches: 9, Indels: 12
0.74 0.11 0.15
Matches are distributed among these distances:
1 5 0.08
2 53 0.88
3 2 0.03
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (2 bp):
TA
Found at i:4317078 original size:16 final size:17
Alignment explanation
Indices: 4317018--4317108 Score: 77
Period size: 16 Copynumber: 5.6 Consensus size: 17
4317008 TATATTTTAA
**
4317018 ATTT-TATATTACGTAT
1 ATTTATATATTATATAT
* *
4317034 ATATATATATTTTATACT
1 ATTTATATATTATATA-T
4317052 ATTT-TAT-TTATATAT
1 ATTTATATATTATATAT
*
4317067 CTTTA-ATATTATAT-T
1 ATTTATATATTATATAT
4317082 ATTTATATA-TATATAT
1 ATTTATATATTATATAT
*
4317098 ATATATATATT
1 ATTTATATATT
4317109 TCTACATGTT
Statistics
Matches: 59, Mismatches: 9, Indels: 13
0.73 0.11 0.16
Matches are distributed among these distances:
15 16 0.27
16 27 0.46
17 12 0.20
18 4 0.07
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.58
Consensus pattern (17 bp):
ATTTATATATTATATAT
Found at i:4317083 original size:25 final size:23
Alignment explanation
Indices: 4317037--4317109 Score: 76
Period size: 25 Copynumber: 3.0 Consensus size: 23
4317027 TACGTATATA
*
4317037 TATATATTTTATACTATTTTATT
1 TATATATTTTATACTATATTATT
*
4317060 TATATATCTTTAATATTATATTATT
1 TATATAT-TTT-ATACTATATTATT
*
4317085 TATATATATATATA-TATATATATT
1 TATATAT-TTTATACTATAT-TATT
4317109 T
1 T
4317110 CTACATGTTA
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
23 12 0.28
24 11 0.26
25 20 0.47
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (23 bp):
TATATATTTTATACTATATTATT
Found at i:4317122 original size:54 final size:54
Alignment explanation
Indices: 4317008--4317123 Score: 121
Period size: 54 Copynumber: 2.1 Consensus size: 54
4316998 ATATATTAGG
* * **
4317008 TATAT-TTTAAATTTTATATTACGTATATATATATATTTTATACTATTTTATTTA
1 TATATCTTT-AATATTATATTACGTATATATATATATTATATACTATTTTACATA
** *
4317062 TATATCTTTAATATTATATTATTTATATATATATATATATATA-TATTTCTACATG
1 TATATCTTTAATATTATATTACGTATATATATATAT-TATATACTATTT-TACATA
4317117 T-TATCTT
1 TATATCTT
4317124 ATGTATATAT
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
54 40 0.77
55 12 0.23
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.58
Consensus pattern (54 bp):
TATATCTTTAATATTATATTACGTATATATATATATTATATACTATTTTACATA
Found at i:4317170 original size:25 final size:25
Alignment explanation
Indices: 4317122--4317207 Score: 83
Period size: 25 Copynumber: 3.6 Consensus size: 25
4317112 ACATGTTATC
*
4317122 TTATGTATATA-TCTT-A-ACTATA
1 TTATGTATATATTTTTAACACTATA
*
4317144 TTATGTATGTATTTTTAACACTATA
1 TTATGTATATATTTTTAACACTATA
* *
4317169 TTATGTACATATTTTTAATA-T-TA
1 TTATGTATATATTTTTAACACTATA
* *
4317192 TCATGTATTTATTTTT
1 TTATGTATATATTTTT
4317208 TATATATGTA
Statistics
Matches: 53, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
22 10 0.19
23 18 0.34
24 2 0.04
25 23 0.43
ACGTcount: A:0.31, C:0.07, G:0.06, T:0.56
Consensus pattern (25 bp):
TTATGTATATATTTTTAACACTATA
Found at i:4317204 original size:23 final size:24
Alignment explanation
Indices: 4317076--4317214 Score: 74
Period size: 23 Copynumber: 5.8 Consensus size: 24
4317066 TCTTTAATAT
* *
4317076 TATATTATTTATATATATATAT-ATA
1 TATA-TATTTTTA-ATATATATCATG
* *
4317101 TATATATTTCTACATGT-TATCTTATG
1 TATATATTTTTA-ATATATATC--ATG
*
4317127 TATATA-TCTTAACTATAT-T-ATG
1 TATATATTTTTAA-TATATATCATG
* * *
4317149 TATGTATTTTTAACACTATATTATG
1 TATATATTTTTAATA-TATATCATG
*
4317174 TACATATTTTTAATAT-TATCATG
1 TATATATTTTTAATATATATCATG
* *
4317197 TATTTATTTTTTATATAT
1 TATATATTTTTAATATAT
4317215 GTACATATTG
Statistics
Matches: 87, Mismatches: 17, Indels: 21
0.70 0.14 0.17
Matches are distributed among these distances:
22 9 0.10
23 30 0.34
24 14 0.16
25 25 0.29
26 9 0.10
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.55
Consensus pattern (24 bp):
TATATATTTTTAATATATATCATG
Found at i:4323863 original size:15 final size:16
Alignment explanation
Indices: 4323843--4323880 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
4323833 CAATGATTCG
4323843 ATTTTAGTTTTAAT-T
1 ATTTTAGTTTTAATGT
*
4323858 ATTTTAATTTTTAATGT
1 ATTTT-AGTTTTAATGT
4323875 ATTTTA
1 ATTTTA
4323881 TATTAATTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 5 0.25
16 9 0.45
17 6 0.30
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (16 bp):
ATTTTAGTTTTAATGT
Found at i:4326383 original size:19 final size:18
Alignment explanation
Indices: 4326341--4326671 Score: 106
Period size: 19 Copynumber: 17.6 Consensus size: 18
4326331 ACAAAATAAT
4326341 AATTTTTGAAAACACGAA
1 AATTTTTGAAAACACGAA
*
4326359 GATTTTTG-AAACACGAA
1 AATTTTTGAAAACACGAA
4326376 AATTTTTTGAAAACACGAAAACACAA
1 AA-TTTTTGAAAACACG-------AA
* **
4326402 AATATTTT--TAACACGGG
1 AAT-TTTTGAAAACACGAA
4326419 AATTTTTGAAAACACGACA
1 AATTTTTGAAAACACGA-A
** **
4326438 GTTTTTCTTTAAACACGAA
1 AATTTT-TGAAAACACGAA
*
4326457 ATTTTTTTGAAAACACAGAA
1 A-ATTTTTGAAAACAC-GAA
* * *
4326477 ATTTTTTGAAAACAAGGA
1 AATTTTTGAAAACACGAA
* * * *
4326495 AATTTTAG-ATACATGAG
1 AATTTTTGAAAACACGAA
4326512 AATTCTTTG---ACACGAA
1 AATT-TTTGAAAACACGAA
* * *
4326528 AAATTTTGAAAACATGAG
1 AATTTTTGAAAACACGAA
** *
4326546 AA-TTCCGAAAACATG--
1 AATTTTTGAAAACACGAA
* *
4326561 AATTTTTTAAAACATGAA
1 AATTTTTGAAAACACGAA
* *
4326579 ATTTTTTAAAAAACACGAGA
1 AATTTTT-GAAAACACGA-A
*
4326599 ATTTTTTGAAAACACGAAA
1 AATTTTTGAAAACACG-AA
**
4326618 ACATGAAAATTTTGAAAACACAGGT
1 A-AT-----TTTTGAAAACAC-GAA
4326643 AATTTTTGAAAACACGAA
1 AATTTTTGAAAACACGAA
*
4326661 AATTTCTGAAA
1 AATTTTTGAAA
4326672 GACGGGAGTT
Statistics
Matches: 236, Mismatches: 44, Indels: 66
0.68 0.13 0.19
Matches are distributed among these distances:
15 6 0.03
16 22 0.09
17 33 0.14
18 54 0.23
19 62 0.26
20 28 0.12
24 8 0.03
25 14 0.06
26 9 0.04
ACGTcount: A:0.46, C:0.11, G:0.12, T:0.31
Consensus pattern (18 bp):
AATTTTTGAAAACACGAA
Found at i:4326619 original size:27 final size:25
Alignment explanation
Indices: 4326588--4326638 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
4326578 AATTTTTTAA
*
4326588 AAAACACGAGAATTTTTTGAAAACACG
1 AAAACACGA-AA-ATTTTGAAAACACG
*
4326615 AAAACATGAAAATTTTGAAAACAC
1 AAAACACGAAAATTTTGAAAACAC
4326639 AGGTAATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 12 0.55
26 2 0.09
27 8 0.36
ACGTcount: A:0.53, C:0.14, G:0.12, T:0.22
Consensus pattern (25 bp):
AAAACACGAAAATTTTGAAAACACG
Done.