Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 153 of 255
Found at i:49736839 original size:18 final size:18
Alignment explanation
Indices: 49736787--49736842 Score: 69
Period size: 18 Copynumber: 3.1 Consensus size: 18
49736777 AGGTGAAATT
*
49736787 AATAAAAACATAAAA-TAA
1 AATAAAAA-TTAAAATTAA
49736805 GAATAAAAATTAAAATTAA
1 -AATAAAAATTAAAATTAA
*
49736824 AATTAAAATTAAAATTAA
1 AATAAAAATTAAAATTAA
49736842 A
1 A
49736843 CATCATCATC
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
18 23 0.68
19 11 0.32
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.25
Consensus pattern (18 bp):
AATAAAAATTAAAATTAA
Found at i:49741339 original size:40 final size:40
Alignment explanation
Indices: 49741293--49741534 Score: 348
Period size: 40 Copynumber: 6.0 Consensus size: 40
49741283 CGGAATTTAA
*
49741293 CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACTTAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
**
49741333 CCGGATATAGTAGTTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
49741373 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
49741413 CCGGATATAGTAACTCGCACAAATGCCTTC-GGAGCTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
**
49741453 CTAGA-ATTAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
** *
49741493 CCGGA-ATTAGTCTCTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
49741533 CC
1 CC
49741535 CGTTATCATC
Statistics
Matches: 186, Mismatches: 12, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
39 5 0.03
40 178 0.96
41 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:49751320 original size:47 final size:48
Alignment explanation
Indices: 49751233--49751346 Score: 119
Period size: 47 Copynumber: 2.4 Consensus size: 48
49751223 GTAAGGTGCT
* ** *
49751233 GATGCCATGTCCCAGACACGGTCCTACACTGGCTTACATC-TCAAGTC
1 GATGCCATGTCCCAGACATGGTCCTACACTAACTTACATCTTCAAGCC
**
49751280 GATGCCATGTCCCAGACATGG-CCTTACACTAAC-TATCATCTTGTAGCC
1 GATGCCATGTCCCAGACATGGTCC-TACACTAACTTA-CATCTTCAAGCC
*
49751328 AATG-CATGTCCCAGACATG
1 GATGCCATGTCCCAGACATG
49751347 TCTTACATTG
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
46 4 0.07
47 46 0.81
48 7 0.12
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCCTACACTAACTTACATCTTCAAGCC
Found at i:49751874 original size:30 final size:30
Alignment explanation
Indices: 49751839--49751896 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
49751829 AAATTCACAT
* *
49751839 CTTTGGTAAAATGACCATTTTGCCCCTAGA
1 CTTTGGCAAAATGACCATTTTACCCCTAGA
49751869 CTTTGGCAAAATGACCATTTTACCCCTA
1 CTTTGGCAAAATGACCATTTTACCCCTA
49751897 TGCTCGAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CTTTGGCAAAATGACCATTTTACCCCTAGA
Found at i:49754231 original size:47 final size:47
Alignment explanation
Indices: 49753973--49754289 Score: 244
Period size: 47 Copynumber: 6.7 Consensus size: 47
49753963 TTTGTGTGCT
* * * * *
49753973 AGTGTAAGACCATGTTTGGTACATGGAATCGGGA-TTGAGATGA-GAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATC--GACTTGATA-GATGAGCC
* * *
49754021 AGTGTAAGA-CATGTCTTGGACAT-GCATCGGCCTCG--AGATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGATAGATG--AGCC
* * * * * **
49754067 AGTGTAAGA-CATGTCTGGGATAT-GCATCGGCACGT-ATAAAGGTGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATC-G-ACTTGATAGATGAGCC
* * *
49754113 AGTGTAAGACCATGTCTGGAACATGGCATCGGCAC-GGATATG-TGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATC-G-ACTTGATA-GAT--GAGCC
*
49754163 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATAGATGAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATAGATGAGCC
*
49754210 AGTGTAAGACCATGTTTGGGACATGGCATCGACTTGATAGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATAGATGAGCC
49754257 AGTGTAAGACCATGT-TCGGGACATGGCATCGAC
1 AGTGTAAGACCATGTCT-GGGACATGGCATCGAC
49754290 ATTATATCCT
Statistics
Matches: 223, Mismatches: 30, Indels: 33
0.78 0.10 0.12
Matches are distributed among these distances:
43 2 0.01
44 2 0.01
45 2 0.01
46 48 0.22
47 103 0.46
48 28 0.13
49 6 0.03
50 32 0.14
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATAGATGAGCC
Found at i:49754284 original size:94 final size:96
Alignment explanation
Indices: 49753973--49754289 Score: 270
Period size: 94 Copynumber: 3.3 Consensus size: 96
49753963 TTTGTGTGCT
* * * *
49753973 AGTGTAAGACCATGTTTGGTACATGGAATCGGGA-TTG--AGATGAGAGCTAGTGTAAGA-CATG
1 AGTGTAAGACCATGTCTGGGACATGGCATC--GACTTGATAGATGAG-TC-AGTGTAAGACCATG
* *
49754034 TCTTGG-ACAT-GCATCGGC-CTCGAGATGTA-AGCC
62 TC-TGGAACATGGCATCGGCAC-GGATATGTAGAGCC
* * * * * *
49754067 AGTGTAAGA-CATGTCTGGGATAT-GCATCGGCACGT-ATAAAGGTGTTAGTGTAAGACCATGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-G-ACTTGATAGATGAGTCAGTGTAAGACCATGTC
*
49754129 TGGAACATGGCATCGGCACGGATATGTGAGAGCT
64 TGGAACATGGCATCGGCACGGATATGT-AGAGCC
*
49754163 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATAGATGAGTCAGTGTAAGACCATGTTTG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATAGATGAGTCAGTGTAAGACCATGTCTG
* *
49754228 GGACATGGCATC-G-ACTTGATA-G-ATGAGCC
66 GAACATGGCATCGGCAC-GGATATGTA-GAGCC
49754257 AGTGTAAGACCATGT-TCGGGACATGGCATCGAC
1 AGTGTAAGACCATGTCT-GGGACATGGCATCGAC
49754290 ATTATATCCT
Statistics
Matches: 184, Mismatches: 23, Indels: 32
0.77 0.10 0.13
Matches are distributed among these distances:
91 2 0.01
92 17 0.09
93 24 0.13
94 62 0.34
95 5 0.03
96 20 0.11
97 49 0.27
98 5 0.03
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.25
Consensus pattern (96 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATAGATGAGTCAGTGTAAGACCATGTCTG
GAACATGGCATCGGCACGGATATGTAGAGCC
Found at i:49756799 original size:38 final size:40
Alignment explanation
Indices: 49756692--49756875 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
49756682 TCGAATGATG
* * * * *
49756692 TCCGGGCTAAGTCCCGAAGG-TTTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
49756732 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
49756772 TCCGGGCTAAG-CCCG-AGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
49756810 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
49756851 -CCGGGCTATGTCCCAAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
49756876 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
38 31 0.25
39 7 0.06
40 75 0.61
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:49779241 original size:40 final size:40
Alignment explanation
Indices: 49779120--49779423 Score: 382
Period size: 40 Copynumber: 7.5 Consensus size: 40
49779110 AACCCAATAT
* * * *
49779120 CTTCGGGATTTAGCCGGGATATAGTCACTAGCACAAATG-
1 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
* *
49779159 CTTCGGGACTT-GCCCGGGTATAGCAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACT--T-GCACAAATGC
49779201 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
* * * **
49779241 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
* * *
49779281 CTTCGGTACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
* *
49779321 CTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACT--T-GCACAAATGC
49779364 CTTCGGGACTTAGCCC-GATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
49779403 CTTCGGGAC-TAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
49779424 CATCTGAATA
Statistics
Matches: 232, Mismatches: 24, Indels: 18
0.85 0.09 0.07
Matches are distributed among these distances:
38 19 0.08
39 34 0.15
40 107 0.46
41 10 0.04
42 21 0.09
43 41 0.18
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
Found at i:49781351 original size:47 final size:47
Alignment explanation
Indices: 49781294--49781556 Score: 235
Period size: 47 Copynumber: 5.7 Consensus size: 47
49781284 GGTATAATGC
* * * *
49781294 CGATGGCATGTCTCGGACATGGTCTTACACTGGCTCATCTATCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCTATCAAGT
49781341 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCTATCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCTATCAAGT
* * * *
49781388 CAATGCCATGTCCCAGACATGGTCTTACATTGACACATC--TCATAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCTATCA-AGT
* *
49781434 CGATG-CATGTCCCAGACAT-TTCTTACACTTG-CTTACATC--TCAAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACAC-TGAC-T-CATCTATCAA-GT
* *
49781480 CGATG-CATGTCCCAGACAT-ATCTTACACT-AGCTC-TCATCTCAA-T
1 CGATGCCATGTCCCAGACATGGTCTTACACTGA-CTCATC-TATCAAGT
* *
49781524 CCCGATGCCATGTCCCAAACATGGTGTTACACT
1 --CGATGCCATGTCCCAGACATGGTCTTACACT
49781557 AGCACACAAA
Statistics
Matches: 185, Mismatches: 17, Indels: 27
0.81 0.07 0.12
Matches are distributed among these distances:
43 2 0.01
44 9 0.05
45 22 0.12
46 52 0.28
47 92 0.50
48 8 0.04
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCTATCAAGT
Found at i:49782942 original size:56 final size:56
Alignment explanation
Indices: 49782856--49782975 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
49782846 ACAAGGGATG
49782856 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
49782912 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
49782968 ATGGGCAA
1 ATGGGCAA
49782976 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:49784479 original size:47 final size:47
Alignment explanation
Indices: 49784423--49785314 Score: 1541
Period size: 47 Copynumber: 18.8 Consensus size: 47
49784413 GATTTAGGAT
49784423 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
49784470 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
49784517 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGG
*
49784566 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
49784613 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGG
49784662 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
* *
49784709 CCGTTGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
49784756 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
49784803 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
49784850 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGG
49784899 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
*
49784946 CCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
49784993 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
49785040 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGG
49785089 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
49785136 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
* * * *
49785183 CCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
* * * * * * *
49785230 CCAACGTGATGGATGTGAAAGTGTATATATGTGACAGGGCCGAGTGG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
* * * *
49785277 CCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
49785315 TCCCGAAGGG
Statistics
Matches: 819, Mismatches: 18, Indels: 16
0.96 0.02 0.02
Matches are distributed among these distances:
47 632 0.77
49 187 0.23
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
Found at i:49784607 original size:143 final size:141
Alignment explanation
Indices: 49784423--49785314 Score: 1541
Period size: 143 Copynumber: 6.3 Consensus size: 141
49784413 GATTTAGGAT
49784423 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
49784488 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
66 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
49784553 TAAGGCCTAATGG
129 TAAGGCCTAATGG
*
49784566 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGA
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
49784631 AAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
66 AAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
49784696 TAAGGCCTAATGG
129 TAAGGCCTAATGG
* *
49784709 CCGTTGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
49784774 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
66 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
49784839 AGGCCTAATGG
131 AGGCCTAATGG
49784850 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 CCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
49784915 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATATGAAAGTGTATATATGTGA
64 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
49784980 TAAGGCCTAATGG
129 TAAGGCCTAATGG
49784993 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
49785058 AAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
66 AAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
49785123 TAAGGCCTAATGG
129 TAAGGCCTAATGG
49785136 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
* * * * * * * *
49785201 AAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATATATGTGACA
66 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
* * *
49785266 GGGCCGAGTGG
131 AGGCCTAATGG
* * * *
49785277 CCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
49785315 TCCCGAAGGG
Statistics
Matches: 720, Mismatches: 23, Indels: 14
0.95 0.03 0.02
Matches are distributed among these distances:
141 233 0.32
143 440 0.61
145 47 0.07
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (141 bp):
CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
AGGCCTAATGG
Found at i:49784755 original size:190 final size:188
Alignment explanation
Indices: 49784423--49785314 Score: 1541
Period size: 190 Copynumber: 4.7 Consensus size: 188
49784413 GATTTAGGAT
49784423 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
49784488 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
66 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
49784553 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAG
129 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
49784613 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 CCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
49784678 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGTTGTGATGAATATGAAAGTGTATATATGTGA
64 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
49784743 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
129 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
49784803 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
49784868 AAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
66 AAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
49784933 TAAGGCCTAATGGCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATGG
129 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
49784993 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
49785058 AAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
66 AAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
49785123 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
129 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
* * * * * * *
49785183 CCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGA
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
* * * * * * * *
49785248 AAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATA
66 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
49785313 AG
131 AG
49785315 TCCCGAAGGG
Statistics
Matches: 676, Mismatches: 22, Indels: 10
0.95 0.03 0.01
Matches are distributed among these distances:
188 101 0.15
190 483 0.71
192 92 0.14
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (188 bp):
CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
Found at i:49785489 original size:37 final size:37
Alignment explanation
Indices: 49785433--49785511 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
49785423 CCGAGCTCTA
* * * *
49785433 AAGACCCGGTGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
49785470 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
49785507 AAGAC
1 AAGAC
49785512 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:49787466 original size:39 final size:40
Alignment explanation
Indices: 49787366--49787669 Score: 209
Period size: 40 Copynumber: 7.6 Consensus size: 40
49787356 TCGAATGATG
* * *
49787366 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
49787405 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
49787446 TCTGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
49787485 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* ** * *
49787524 AACCGGGCTAAGTCCCGAAGAGCATTCATGCTA-TTGA-T-GT
1 -TCCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGTT-ACTAAT
* * * * *
49787564 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA-T-GT
1 -TCCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGTTACTAAT
** * * *
49787604 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-T-GT
1 -TCCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGTTACTAAT
49787644 ATCCGGGCTAAGTCCCGAAGAGCATT
1 -TCCGGGCTAAGTCCCGAAG-GCATT
49787670 CATGTTAGTG
Statistics
Matches: 231, Mismatches: 24, Indels: 18
0.85 0.09 0.07
Matches are distributed among these distances:
39 35 0.15
40 175 0.76
41 21 0.09
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:49787619 original size:120 final size:120
Alignment explanation
Indices: 49787449--49787754 Score: 393
Period size: 120 Copynumber: 2.6 Consensus size: 120
49787439 TACTAATTCT
* * * * * * **
49787449 GGGCTAAG-CCCGAAG-GCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAG-GCATTTG
1 GGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA-TATATCCGGGCTAAGTCCCGAAGAGCATTCA
* *
49787511 TGCGAGTTACTATAACCGGGCTAAGTCCCGAAGAGCATTCATGCTATTGATGTATCC
65 TGCGAGTGA-TATAACCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCC
*
49787568 GGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCAT
1 GGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCAT
* * * *
49787633 GCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGTTAGTGATGTATCC
66 GCGAGTGATATAACCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCC
** ** *
49787688 GGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCATGCTAAACCCCGAAGAGCAATCAT
1 GGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCAT
49787753 GC
66 GC
49787755 TGGTGACGTG
Statistics
Matches: 163, Mismatches: 21, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
119 8 0.05
120 130 0.80
121 25 0.15
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (120 bp):
GGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCAT
GCGAGTGATATAACCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCC
Found at i:49787670 original size:40 final size:40
Alignment explanation
Indices: 49787484--49787760 Score: 358
Period size: 40 Copynumber: 6.9 Consensus size: 40
49787474 GAGTTACTAA
* ** * * *
49787484 ATCCGGGTTAAGTCCCGAAG-GCATTTGTGCGAGTTACTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGT
* *
49787524 AACCGGGCTAAGTCCCGAAGAGCATTCATGCTATTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* *
49787564 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
49787604 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
*
49787644 ATCCGGGCTAAGTCCCGAAGAGCATTCATGTTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * *
49787684 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
** ** * *
49787724 ATCCATGCTAAACCCCGAAGAGCAATCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
49787761 CGTGTATTCG
Statistics
Matches: 209, Mismatches: 27, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
40 198 0.95
41 11 0.05
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:49789090 original size:56 final size:56
Alignment explanation
Indices: 49789004--49789123 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
49788994 ACAAGGGATG
49789004 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
49789060 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
49789116 ATGGGCAA
1 ATGGGCAA
49789124 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:49791033 original size:47 final size:47
Alignment explanation
Indices: 49790980--49791394 Score: 749
Period size: 47 Copynumber: 8.7 Consensus size: 47
49790970 GATTTAGGAT
* *
49790980 CCGATGTGATGAATGTGAAAGTATATACATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
49791027 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
49791074 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
49791121 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGG
49791170 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
* *
49791217 CTGATGTGGTGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGG
49791266 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
*
49791313 CCGATGTGATGAATGTGAAGGTGTATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
49791360 CCGATGTGATGAATGTGAAAGTGTATATATGTGAT
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGAT
49791395 GATGAATGTG
Statistics
Matches: 356, Mismatches: 8, Indels: 8
0.96 0.02 0.02
Matches are distributed among these distances:
47 264 0.74
49 92 0.26
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
Found at i:49791043 original size:96 final size:92
Alignment explanation
Indices: 49790980--49791394 Score: 613
Period size: 96 Copynumber: 4.4 Consensus size: 92
49790970 GATTTAGGAT
* *
49790980 CCGATGTGATGAATGTGAAAGTATATACATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
49791045 AAGTG--TATATATGTGATAAGGCCTAATGG
66 AAGTGTATATATATGTGATAAGG-C--AT-G
49791074 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
49791139 AAGTGTATATATATGTGATAAGGCCTAATGG
66 AAGTGTATATATATGTGATAAGG-C--AT-G
* *
49791170 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGGTGAATGTGA
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
49791235 AAGTGTATATATATGTGATAAGGCCTAATGG
66 AAGTGTATATATATGTGATAAGG-C--AT-G
49791266 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
*
49791330 AAG-GTGTATATATGTGATAAGGCCTAATGG
66 AAGTGTATATATATGTGATAAGG-C--AT-G
49791360 CCGATGTGATGAATGTGAAAGTGTATATATGTGAT
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGAT
49791395 GATGAATGTG
Statistics
Matches: 312, Mismatches: 7, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
94 129 0.41
95 3 0.01
96 180 0.58
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (92 bp):
CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
AAGTGTATATATATGTGATAAGGCATG
Found at i:49791163 original size:143 final size:143
Alignment explanation
Indices: 49790980--49791394 Score: 748
Period size: 143 Copynumber: 2.9 Consensus size: 143
49790970 GATTTAGGAT
*
49790980 CCGATGTGATGAATGTGAAA--GTATATACATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
49791043 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
66 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
49791108 TAAGGCCTAATGG
131 TAAGGCCTAATGG
49791121 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
49791186 GAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGGTGAATGTGAAAGTGTATATATATGT
66 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGT
49791251 GATAAGGCCTAATGG
129 GATAAGGCCTAATGG
49791266 CCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
49791329 GAAGGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
66 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
49791394 T
131 T
49791395 GATGAATGTG
Statistics
Matches: 264, Mismatches: 6, Indels: 8
0.95 0.02 0.03
Matches are distributed among these distances:
141 32 0.12
143 185 0.70
145 47 0.18
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (143 bp):
CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
TAAGGCCTAATGG
Found at i:49791391 original size:16 final size:16
Alignment explanation
Indices: 49791372--49791421 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
49791362 GATGTGATGA
49791372 ATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATAT
49791388 ATGTG--A-TG-ATGA-
1 ATGTGAAAGTGTAT-AT
49791400 ATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATAT
49791416 ATGTGA
1 ATGTGA
49791422 TAAGGCCTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 12
0.70 0.00 0.30
Matches are distributed among these distances:
12 7 0.25
13 3 0.11
14 2 0.07
15 3 0.11
16 13 0.46
ACGTcount: A:0.36, C:0.00, G:0.28, T:0.36
Consensus pattern (16 bp):
ATGTGAAAGTGTATAT
Found at i:49791402 original size:28 final size:28
Alignment explanation
Indices: 49791366--49791422 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
49791356 ATGGCCGATG
49791366 TGATGAATGTGAAAGTGTATATATGTGA
1 TGATGAATGTGAAAGTGTATATATGTGA
49791394 TGATGAATGTGAAAGTGTATATATGTGA
1 TGATGAATGTGAAAGTGTATATATGTGA
49791422 T
1 T
49791423 AAGGCCTAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.35, C:0.00, G:0.28, T:0.37
Consensus pattern (28 bp):
TGATGAATGTGAAAGTGTATATATGTGA
Found at i:49791405 original size:122 final size:122
Alignment explanation
Indices: 49791272--49791515 Score: 479
Period size: 122 Copynumber: 2.0 Consensus size: 122
49791262 ATGGCCGATG
*
49791272 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGT
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
49791337 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
66 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
49791394 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
49791459 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
66 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
49791516 CAGGGCCGAG
Statistics
Matches: 121, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
122 121 1.00
ACGTcount: A:0.32, C:0.07, G:0.30, T:0.31
Consensus pattern (122 bp):
TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:49791412 original size:75 final size:75
Alignment explanation
Indices: 49791319--49791469 Score: 293
Period size: 75 Copynumber: 2.0 Consensus size: 75
49791309 ATGGCCGATG
*
49791319 TGATGAATGTGAAGGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
49791384 ATATATGTGA
66 ATATATGTGA
49791394 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
49791459 ATATATGTGA
66 ATATATGTGA
49791469 T
1 T
49791470 AAGGCCTAAT
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
75 75 1.00
ACGTcount: A:0.32, C:0.05, G:0.30, T:0.32
Consensus pattern (75 bp):
TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
ATATATGTGA
Found at i:49791449 original size:47 final size:47
Alignment explanation
Indices: 49791394--49791566 Score: 265
Period size: 47 Copynumber: 3.7 Consensus size: 47
49791384 ATATATGTGA
49791394 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
49791441 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
* * * * * *
49791488 TGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
* * *
49791535 TGATGGATGTTAAAGTGTATAAATGTGATAAG
1 TGATGAATGTGAAAGTGTATATATGTGATAAG
49791567 TCCCGAAGGG
Statistics
Matches: 115, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 115 1.00
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
Found at i:49791741 original size:37 final size:37
Alignment explanation
Indices: 49791685--49791763 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
49791675 CCAAGCTCTA
* * *
49791685 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
49791722 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
49791759 AAGAC
1 AAGAC
49791764 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:49798989 original size:22 final size:22
Alignment explanation
Indices: 49798964--49799005 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
49798954 GTCTTTAGGA
*
49798964 ATTT-ATTTCTTTAGTAATAAGG
1 ATTTAATTTCTGTAG-AATAAGG
49798986 ATTTAATTTCTGTAGAATAA
1 ATTTAATTTCTGTAGAATAA
49799006 AACATAGCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.36, C:0.05, G:0.12, T:0.48
Consensus pattern (22 bp):
ATTTAATTTCTGTAGAATAAGG
Found at i:49815002 original size:7 final size:7
Alignment explanation
Indices: 49814990--49815014 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
49814980 CCTCATTCCT
49814990 TCATTCA
1 TCATTCA
49814997 TCATTCA
1 TCATTCA
49815004 TCATTCA
1 TCATTCA
49815011 TCAT
1 TCAT
49815015 CCCTTATCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.28, G:0.00, T:0.44
Consensus pattern (7 bp):
TCATTCA
Found at i:49817734 original size:79 final size:80
Alignment explanation
Indices: 49817571--49817749 Score: 204
Period size: 79 Copynumber: 2.2 Consensus size: 80
49817561 CATTCAAATG
* * * *
49817571 CCTTTGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTA
1 CCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATA
* **
49817635 GTAACTCGCACCAATG
65 GTAACTAGCACCAAAA
** *
49817651 CCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATG
1 CCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATA
*
49817714 GTCACTTAGCA-CAAAA
65 GTAAC-TAGCACCAAAA
49817730 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAGCCCGGA
49817750 CATCATTCGA
Statistics
Matches: 84, Mismatches: 11, Indels: 8
0.82 0.11 0.08
Matches are distributed among these distances:
78 3 0.04
79 58 0.69
80 23 0.27
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAG
TAACTAGCACCAAAA
Found at i:49817749 original size:40 final size:40
Alignment explanation
Indices: 49817565--49817749 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
49817555 GCTACTCATT
* * *
49817565 CAAATGCCTTTGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
49817605 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
49817645 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
49817684 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
*
49817725 CAAA-ACCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
49817750 CATCATTCGA
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 78 0.63
41 12 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:49819015 original size:84 final size:85
Alignment explanation
Indices: 49818917--49819094 Score: 349
Period size: 84 Copynumber: 2.1 Consensus size: 85
49818907 TATTTTATTG
49818917 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATG-TTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
49818981 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
49819001 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
49819066 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
49819086 CCCATGCTC
1 CCCATGCTC
49819095 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
84 61 0.66
85 32 0.34
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.38
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:49820314 original size:47 final size:47
Alignment explanation
Indices: 49820245--49820373 Score: 204
Period size: 47 Copynumber: 2.7 Consensus size: 47
49820235 ATATAATGCT
*
49820245 GATGCCATGTCCCGAACATGGTCTTACACTGGCTCATCTATCAAGTC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCATCTATCAAGTC
* *
49820292 GATGCCATGTCCCAAACATGGTCTTACACTGACTCATCTATCAAGTT
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCATCTATCAAGTC
* * *
49820339 GATGCCATGTCCCAGACATGGTCTTGCACTAGCTC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTC
49820374 TCACATATCC
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 75 1.00
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (47 bp):
GATGCCATGTCCCAAACATGGTCTTACACTGGCTCATCTATCAAGTC
Found at i:49820520 original size:46 final size:46
Alignment explanation
Indices: 49820433--49820560 Score: 143
Period size: 46 Copynumber: 2.7 Consensus size: 46
49820423 CCTTATACGT
* * * *
49820433 GCCGATGCATATCCCAGACATGTCTTACACTGGCTTACATCTCGAG
1 GCCGATGCATGTCCAAGACATGTCTTACACTAGCTTACATCTCAAG
*
49820479 GCCGATGCATGTCCAAGACATGTCTTACACTAGCTCT-CATCTCAAT
1 GCCGATGCATGTCCAAGACATGTCTTACACTAGCT-TACATCTCAAG
* *
49820525 CCCGATTCCATGTACCAA-ACATGGTCTTACACTAGC
1 GCCGA-TGCATGT-CCAAGACAT-GTCTTACACTAGC
49820561 ACACAAATGA
Statistics
Matches: 71, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
46 43 0.61
47 11 0.15
48 17 0.24
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCAAGACATGTCTTACACTAGCTTACATCTCAAG
Found at i:49823227 original size:46 final size:46
Alignment explanation
Indices: 49823031--49823251 Score: 155
Period size: 46 Copynumber: 4.7 Consensus size: 46
49823021 TACTTGCGTA
* * ** *
49823031 AGCTAGTGTAAGACATGTTTGGGACATGCATCGGCCACATTATGAG
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGATGAT
* ** **
49823077 AG-TCAGTGTAAGACCACGTCCAGGACATGGCATCGGC-ATTGAGATGAGT
1 AGCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-CAAGATGA-T
* * * *
49823126 -GCTAGTGGAAGACATGTTTGGGACATGCATCGGCCT-CGAGA-CAT
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGG-CTACAAGATGAT
* * *
49823170 AAGCCAATGTAAGACATGTCTGGGACATGCATTGGCTACAAGATGAT
1 -AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGATGAT
* *
49823217 AGTTAGTGTAAGGCCATGTCTGGGACATGGCATCG
1 AGCTAGTGTAA-GACATGTCTGGGACAT-GCATCG
49823252 ACTTGAGATG
Statistics
Matches: 133, Mismatches: 28, Indels: 26
0.71 0.15 0.14
Matches are distributed among these distances:
44 1 0.01
45 4 0.03
46 62 0.47
47 39 0.29
48 26 0.20
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (46 bp):
AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGATGAT
Found at i:49823261 original size:47 final size:48
Alignment explanation
Indices: 49823169--49823297 Score: 124
Period size: 47 Copynumber: 2.8 Consensus size: 48
49823159 CCTCGAGACA
* * * *
49823169 TAAGCCAATGTAAGA-CATGTCTGGGACAT-GCATTGGCTACAAGATG
1 TAAGCCAGTGTAGGACCATGTCTGGGACATGGCATCGACTACAAGATG
** **
49823215 -ATAGTTAGTGTAAGG-CCATGTCTGGGACATGGCATCGACT-TGAGATG
1 TA-AGCCAGTGT-AGGACCATGTCTGGGACATGGCATCGACTACAAGATG
*
49823262 TAAGCCAGTGTAGGACCGTGTCTGGGACATGGCATC
1 TAAGCCAGTGTAGGACCATGTCTGGGACATGGCATC
49823298 AGCACCTTAC
Statistics
Matches: 66, Mismatches: 11, Indels: 11
0.75 0.12 0.12
Matches are distributed among these distances:
45 1 0.02
46 9 0.14
47 48 0.73
48 8 0.12
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (48 bp):
TAAGCCAGTGTAGGACCATGTCTGGGACATGGCATCGACTACAAGATG
Found at i:49823288 original size:140 final size:141
Alignment explanation
Indices: 49823037--49823297 Score: 321
Period size: 140 Copynumber: 1.9 Consensus size: 141
49823027 CGTAAGCTAG
* **
49823037 TGTAAGACATGTTTGGGACATGCATCGGCCACATTATGAGAGTCAGTGTAAGACCACGTCCAGGA
1 TGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGAGAGTCAGTGTAAGACCACGTCCAGGA
* * * *
49823102 CATGGCATCGGCATTGAGATGAGTGCTAGTGGAAGACATGTTTGGGACAT-GCATCGGCCTCGAG
66 CATGGCATCGACATTGAGATGAGAGCCAGTGGAAGACATGTCTGGGACATGGCATCGGCCTCGAG
49823166 ACATAAGCCAA
131 ACATAAGCCAA
* * * * * * **
49823177 TGTAAGACATGTCTGGGACATGCATTGGCTACAAGATGATAGTTAGTGTAAGGCCATGTCTGGGA
1 TGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGAGAGTCAGTGTAAGACCACGTCCAGGA
* * *
49823242 CATGGCATCGAC-TTGAGATGTA-AGCCAGTGTAGGACCGTGTCTGGGACATGGCATC
66 CATGGCATCGACATTGAGATG-AGAGCCAGTGGAAGA-CATGTCTGGGACATGGCATC
49823298 AGCACCTTAC
Statistics
Matches: 100, Mismatches: 18, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
139 17 0.17
140 78 0.78
141 5 0.05
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (141 bp):
TGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGAGAGTCAGTGTAAGACCACGTCCAGGA
CATGGCATCGACATTGAGATGAGAGCCAGTGGAAGACATGTCTGGGACATGGCATCGGCCTCGAG
ACATAAGCCAA
Found at i:49828002 original size:13 final size:14
Alignment explanation
Indices: 49827984--49828024 Score: 52
Period size: 13 Copynumber: 3.1 Consensus size: 14
49827974 TTATGTTTTA
49827984 TATTATATAT-GTT
1 TATTATATATAGTT
49827997 TATTATA-ATAGTT
1 TATTATATATAGTT
*
49828010 TATAATAT-TAGTT
1 TATTATATATAGTT
49828023 TA
1 TA
49828025 CAAAAATAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
12 2 0.08
13 23 0.92
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (14 bp):
TATTATATATAGTT
Found at i:49834672 original size:40 final size:40
Alignment explanation
Indices: 49834531--49834765 Score: 345
Period size: 39 Copynumber: 6.0 Consensus size: 40
49834521 GATGATAACG
* ** *
49834531 GGGCTAAGTCCCGAAGGCATTTGTGCTAGAGACTA-ATTC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
49834570 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
49834609 TGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
49834648 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
**
49834688 -GGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
49834727 GGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATC
49834766 GGTTAAATTC
Statistics
Matches: 182, Mismatches: 10, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
38 26 0.14
39 92 0.51
40 64 0.35
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:49834740 original size:79 final size:78
Alignment explanation
Indices: 49834532--49834765 Score: 341
Period size: 79 Copynumber: 3.0 Consensus size: 78
49834522 ATGATAACGG
* * *
49834532 GGCTAAGTCCCGAAGGCATTTGTGCTAGAGACTA-ATTCGGGCTAAGTCCCGAAGGCATTTGTGC
1 GGCTAAGTCCCGAAGGCATTTGTGCGA-ATACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
*
49834596 GAGTTACTA-ATTCT
65 GAGTTACTATA-TCC
*
49834610 GGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
1 GGCTAAGTCCCGAAGGCATTTGTGCGA-ATACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
49834674 GAGTTACTATATCC
65 GAGTTACTATATCC
*
49834688 GGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATCCGGGCTAAGTCCCGAAGGCATTTGAGC
1 GGCTAAGTCCCGAAGGCATTTGTGCGAA-TACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
49834753 GAG-TAGCTATATC
65 GAGTTA-CTATATC
49834766 GGTTAAATTC
Statistics
Matches: 144, Mismatches: 7, Indels: 9
0.90 0.04 0.06
Matches are distributed among these distances:
77 23 0.16
78 56 0.39
79 65 0.45
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (78 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAATACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCG
AGTTACTATATCC
Found at i:49837856 original size:23 final size:23
Alignment explanation
Indices: 49837830--49837876 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
49837820 AATTCTATTG
*
49837830 TCATACCCATGCCATTACTATGC
1 TCATACCCATGCCATTACCATGC
* * *
49837853 TCATTCTCATGCTATTACCATGC
1 TCATACCCATGCCATTACCATGC
49837876 T
1 T
49837877 AATGTCACGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.23, C:0.32, G:0.09, T:0.36
Consensus pattern (23 bp):
TCATACCCATGCCATTACCATGC
Found at i:49839209 original size:6 final size:6
Alignment explanation
Indices: 49839200--49839245 Score: 67
Period size: 6 Copynumber: 7.7 Consensus size: 6
49839190 GATAATGATG
*
49839200 TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT TTTTAT TCTT-AT TTTA
1 TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT T-TTAAT TTTA
49839246 TGTTTTTATT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
5 2 0.05
6 33 0.89
7 2 0.05
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (6 bp):
TTTAAT
Found at i:49867401 original size:56 final size:56
Alignment explanation
Indices: 49867334--49867453 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
49867324 TATTAGTTTA
49867334 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
49867390 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
49867446 TTGCCCAT
1 TTGCCCAT
49867454 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:49868838 original size:46 final size:48
Alignment explanation
Indices: 49868751--49869017 Score: 238
Period size: 47 Copynumber: 5.7 Consensus size: 48
49868741 TCATTTGTGT
* *
49868751 GCTAGTGTAACACCATGTTTGGGACATGGCATCGGGA-TTGAGATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-GGACTTGAGATGAGA
* *
49868799 GCTAGTGTAAGA-TATGTCTGGGACAT-GCATCGGCCTTGAGATGTA-A
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGACTTGAGATG-AGA
* * *
49868845 GCAAGTGTAAGA-AATGTCTGGGACAT-GCATCGG-CTATGAGATGTG-
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGACT-TGAGATGAGA
* * * *
49868890 TC-AATGTAAGACCATGTCTGGGACATGGCAT-TGACTTGATA-GATGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGACTTGAGATGA-GA
*
49868936 G-TCAGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGATA-GATGA
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGACTTGAGATGA-GA
* * * *
49868983 GCCAGTGTAAGACCATGTCCGAGACATGCCATCGG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG
49869018 CATTATACCT
Statistics
Matches: 186, Mismatches: 19, Indels: 28
0.80 0.08 0.12
Matches are distributed among these distances:
44 9 0.05
45 24 0.13
46 58 0.31
47 83 0.45
48 12 0.06
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGACTTGAGATGAGA
Found at i:49870946 original size:40 final size:40
Alignment explanation
Indices: 49870891--49871198 Score: 400
Period size: 40 Copynumber: 7.5 Consensus size: 40
49870881 TATTCAGATG
49870891 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
49870931 ATATCCGGCCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
49870974 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* ** * *
49871014 ATATCCGGGCTAAGTACCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
49871054 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
49871094 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * * *
49871137 ATACCCGGGCAAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
49871177 ATATCCCGGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
49871199 ATACTTGGGT
Statistics
Matches: 234, Mismatches: 28, Indels: 12
0.85 0.10 0.04
Matches are distributed among these distances:
40 160 0.68
41 2 0.01
43 72 0.31
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:49871139 original size:123 final size:122
Alignment explanation
Indices: 49870891--49871198 Score: 426
Period size: 123 Copynumber: 2.5 Consensus size: 122
49870881 TATTCAGATG
* * * *
49870891 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGCCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
*
49870956 TTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
66 TTTGTGCGAG-AGTTACTATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* **
49871014 ATATCCGGGCTAAGTACCGAAGGCATTCATGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
*
49871079 TTTGTGC-A-AGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTG-CT
66 TTTGTGCGAGAGTTACTATACCCGGGCTAAGTCCCGAAGGCATTTGTGC---TAG-TGACT
* * *
49871137 ATACCCGGGCAAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCCGGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGA-CCCGAAG
49871199 ATACTTGGGT
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
120 37 0.22
122 2 0.01
123 124 0.75
124 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (122 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGAGTTACTATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:49871161 original size:163 final size:163
Alignment explanation
Indices: 49870891--49871198 Score: 562
Period size: 163 Copynumber: 1.9 Consensus size: 163
49870881 TATTCAGATG
*
49870891 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGCCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACTATATCCGGCCTAAGTCCCGAAGGCA
* *
49870956 TTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCG
66 TTTGTGCGAGTAGTTGCTATACCCGGGCAAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCC
*
49871021 GGCTAAGTACCGAAGGCATTCATGCTAGTGACT
131 GGCTAAATACCGAAGGCATTCATGCTAGTGACT
*
49871054 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACTATATCCGGCCTAAGTCCCGAAGGCA
49871119 TTTGTGCGAGTAGTTGCTATACCCGGGCAAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCC
66 TTTGTGCGAGTAGTTGCTATACCCGGGCAAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCC
*
49871184 GGCTAAATCCCGAAG
131 GGCTAAATACCGAAG
49871199 ATACTTGGGT
Statistics
Matches: 139, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
163 139 1.00
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (163 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACTATATCCGGCCTAAGTCCCGAAGGCA
TTTGTGCGAGTAGTTGCTATACCCGGGCAAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCC
GGCTAAATACCGAAGGCATTCATGCTAGTGACT
Found at i:49879629 original size:46 final size:44
Alignment explanation
Indices: 49879489--49879652 Score: 159
Period size: 46 Copynumber: 3.5 Consensus size: 44
49879479 GTGCCGACAC
* * * * *
49879489 CATGTCCCAGACACGATCTTACACTGGCTCACATCTCCTGTCAATG
1 CATGTCCCAGACATG-TCTTACACTGGCTTACATCT-CAGGCGATG
* *
49879535 CCATGTCCCAGACATGGTCTTACACTGAC-TATCATCTCATAGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTTA-CATCTC--AGGCGATG
*
49879583 CATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTGGCTTACATCTC-AGGC-GATG
*
49879629 CATGTCCTAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
49879653 AGCACTCGTC
Statistics
Matches: 100, Mismatches: 11, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
45 3 0.03
46 46 0.46
47 45 0.45
48 6 0.06
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.28
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTGGCTTACATCTCAGGCGATG
Found at i:49879663 original size:46 final size:46
Alignment explanation
Indices: 49879536--49879700 Score: 147
Period size: 46 Copynumber: 3.5 Consensus size: 46
49879526 CTGTCAATGC
* * *
49879536 CATGTCCCAGACATGGTCTTACACT-GACTATCATCTCATA-GCCGATG
1 CATGTCCTAGACAT-GTCTTACACTAGCCTA-CGTCTCA-AGGCCGATG
* * * * *
49879583 CATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGCTGATG
1 CATGTCCTAGACATGTCTTACACTAGCCTACGTCTCAAGGCCGATG
*
49879629 CATGTCCTAGACATGTCTTACACTAGCACT-CGTCTCAATGCCGATG
1 CATGTCCTAGACATGTCTTACACTAGC-CTACGTCTCAAGGCCGATG
* * *
49879675 CCATGTCTTGGACATGGTCCTACACT
1 -CATGTCCTAGACAT-GTCTTACACT
49879701 GACTCTCATA
Statistics
Matches: 99, Mismatches: 14, Indels: 9
0.81 0.11 0.07
Matches are distributed among these distances:
45 1 0.01
46 59 0.60
47 30 0.30
48 9 0.09
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.28
Consensus pattern (46 bp):
CATGTCCTAGACATGTCTTACACTAGCCTACGTCTCAAGGCCGATG
Found at i:49879680 original size:93 final size:94
Alignment explanation
Indices: 49879488--49879681 Score: 220
Period size: 93 Copynumber: 2.1 Consensus size: 94
49879478 GGTGCCGACA
* *
49879488 CCATGTCCCAGACACGATCTTACACTGGCTCACATCTCCTGTCAATGCCATGTCCCAGACATGGT
1 CCATGTCCCAGACACGATCTTACACTGGCTCACATCTCCAGGCAATGCCATGTCCCAGACATGGT
49879553 CTTACACTGACTATCATCTCATAGCCGATG
66 CTTACACTGAC-ATCATCTCATAGCCGATG
* * * * * *
49879583 -CATGTCCCAGACATG-TCTTACACTGGCTTACGTCTCGAGGCTGATG-CATGTCCTAGACAT-G
1 CCATGTCCCAGACACGATCTTACACTGGCTCACATCTCCAGGC-AATGCCATGTCCCAGACATGG
*
49879644 TCTTACACT-AGCACTCGTCTCA-ATGCCGATG
65 TCTTACACTGA-CA-TCATCTCATA-GCCGATG
49879675 CCATGTC
1 CCATGTC
49879682 TTGGACATGG
Statistics
Matches: 85, Mismatches: 9, Indels: 12
0.80 0.08 0.11
Matches are distributed among these distances:
91 3 0.04
92 25 0.29
93 40 0.47
94 17 0.20
ACGTcount: A:0.23, C:0.32, G:0.18, T:0.27
Consensus pattern (94 bp):
CCATGTCCCAGACACGATCTTACACTGGCTCACATCTCCAGGCAATGCCATGTCCCAGACATGGT
CTTACACTGACATCATCTCATAGCCGATG
Found at i:49895508 original size:27 final size:28
Alignment explanation
Indices: 49895452--49895521 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
49895442 AAAATTGTAC
49895452 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
49895480 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
*
49895507 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
49895522 GACTTAATAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:49895532 original size:27 final size:27
Alignment explanation
Indices: 49895452--49895534 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
49895442 AAAATTGTAC
* *
49895452 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
49895480 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
49895507 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
49895534 A
1 A
49895535 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:49895535 original size:29 final size:27
Alignment explanation
Indices: 49895424--49895535 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
49895414 CATGAGATTG
* * * *
49895424 GCACTAAGTGTGCGGGCTAAAATTGTACA
1 GCACTAAGTGTGC-GACT-TAATTATATA
* *
49895453 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
49895481 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
49895508 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
49895536 TTTTGAATCA
Statistics
Matches: 70, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
27 23 0.33
28 28 0.40
29 19 0.27
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:49897642 original size:39 final size:39
Alignment explanation
Indices: 49897599--49897727 Score: 125
Period size: 39 Copynumber: 3.3 Consensus size: 39
49897589 TAGAATTTAA
* *
49897599 ACATACTTAAAAGCATGTATTAAAGATGTCCAAACTATG
1 ACATAATTAAAAACATGTATTAAAGATGTCCAAACTATG
* * * * **
49897638 ACATAATTAAAAACTTTTATTAATGATGTTCAAGTTATG
1 ACATAATTAAAAACATGTATTAAAGATGTCCAAACTATG
* * * * *
49897677 ACATAATTAAAAAC-TCTTATTAATGATGTTCAGATTATG
1 ACATAATTAAAAACAT-GTATTAAAGATGTCCAAACTATG
49897716 ACATAATTAAAA
1 ACATAATTAAAA
49897728 CTCATATTAA
Statistics
Matches: 79, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
38 1 0.01
39 78 0.99
ACGTcount: A:0.44, C:0.11, G:0.10, T:0.35
Consensus pattern (39 bp):
ACATAATTAAAAACATGTATTAAAGATGTCCAAACTATG
Found at i:49897737 original size:38 final size:39
Alignment explanation
Indices: 49897616--49897764 Score: 210
Period size: 39 Copynumber: 3.8 Consensus size: 39
49897606 TAAAAGCATG
* * * *
49897616 TATTAAAGATGTCCAAACTATGACATAATTAAAAACTTT
1 TATTAATGATGTTCAAATTATGACATAATTAAAAACTCT
*
49897655 TATTAATGATGTTCAAGTTATGACATAATTAAAAACTCT
1 TATTAATGATGTTCAAATTATGACATAATTAAAAACTCT
* *
49897694 TATTAATGATGTTCAGATTATGACATAATT-AAAACTCA
1 TATTAATGATGTTCAAATTATGACATAATTAAAAACTCT
* *
49897732 TATTAATGATGTTAAAATTATGATATAATTAAA
1 TATTAATGATGTTCAAATTATGACATAATTAAA
49897765 GACTTAAAAC
Statistics
Matches: 98, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
38 34 0.35
39 64 0.65
ACGTcount: A:0.44, C:0.09, G:0.09, T:0.38
Consensus pattern (39 bp):
TATTAATGATGTTCAAATTATGACATAATTAAAAACTCT
Found at i:49897763 original size:77 final size:78
Alignment explanation
Indices: 49897616--49897764 Score: 210
Period size: 77 Copynumber: 1.9 Consensus size: 78
49897606 TAAAAGCATG
** * *
49897616 TATTAAAGATGTCCAAACTATGACATAATTAAAAACTTTTATTAATGATGTTCAAGTTATGACAT
1 TATTAAAGATGTCCAAACTATGACATAATTAAAAACTCATATTAATGATGTTAAAATTATGACAT
49897681 AATTAAAAACTCT
66 AATTAAAAACTCT
* * * * *
49897694 TATTAATGATGTTCAGATTATGACATAATT-AAAACTCATATTAATGATGTTAAAATTATGATAT
1 TATTAAAGATGTCCAAACTATGACATAATTAAAAACTCATATTAATGATGTTAAAATTATGACAT
49897758 AATTAAA
66 AATTAAA
49897765 GACTTAAAAC
Statistics
Matches: 62, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
77 36 0.58
78 26 0.42
ACGTcount: A:0.44, C:0.09, G:0.09, T:0.38
Consensus pattern (78 bp):
TATTAAAGATGTCCAAACTATGACATAATTAAAAACTCATATTAATGATGTTAAAATTATGACAT
AATTAAAAACTCT
Found at i:49898456 original size:18 final size:20
Alignment explanation
Indices: 49898408--49898456 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 20
49898398 AAAATAAGTT
49898408 AAAAATAAAAGAAATTGAGAG
1 AAAAA-AAAAGAAATTGAGAG
49898429 AAGAAAAAAAGAAA-TGAGAG
1 AA-AAAAAAAGAAATTGAGAG
49898449 AAAAAAAA
1 AAAAAAAA
49898457 TTGAAAGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.22
20 8 0.30
21 10 0.37
22 3 0.11
ACGTcount: A:0.73, C:0.00, G:0.18, T:0.08
Consensus pattern (20 bp):
AAAAAAAAAGAAATTGAGAG
Found at i:49898462 original size:20 final size:21
Alignment explanation
Indices: 49898414--49898456 Score: 72
Period size: 20 Copynumber: 2.1 Consensus size: 21
49898404 AGTTAAAAAT
49898414 AAAAGAAATTGAGAGAAGAAA
1 AAAAGAAATTGAGAGAAGAAA
49898435 AAAAGAAA-TGAGAGAA-AAA
1 AAAAGAAATTGAGAGAAGAAA
49898454 AAA
1 AAA
49898457 TTGAAAGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 6 0.27
20 8 0.36
21 8 0.36
ACGTcount: A:0.72, C:0.00, G:0.21, T:0.07
Consensus pattern (21 bp):
AAAAGAAATTGAGAGAAGAAA
Found at i:49900452 original size:50 final size:52
Alignment explanation
Indices: 49900395--49900526 Score: 189
Period size: 50 Copynumber: 2.6 Consensus size: 52
49900385 ATGTGTTTTG
*
49900395 CATTAAATAAAGTCATGCATTATGTAACTCTCATGTTAGTT-AAGTTTA-CAT
1 CATTAAATTAAGTCATGCATTATGTAACTCTCATGTTAGTTAAAG-TTAGCAT
* * *
49900446 CA-TAAATTATGACATGCTTTATGTAACTCTCATGTTAGTTAAAGTTAGCAT
1 CATTAAATTAAGTCATGCATTATGTAACTCTCATGTTAGTTAAAGTTAGCAT
*
49900497 CATTAAATTAAGTCATGCATTAAGTAACTC
1 CATTAAATTAAGTCATGCATTATGTAACTC
49900527 ATCTATTCAT
Statistics
Matches: 70, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
50 37 0.53
51 10 0.14
52 23 0.33
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.38
Consensus pattern (52 bp):
CATTAAATTAAGTCATGCATTATGTAACTCTCATGTTAGTTAAAGTTAGCAT
Found at i:49904794 original size:40 final size:40
Alignment explanation
Indices: 49904730--49904987 Score: 396
Period size: 40 Copynumber: 6.5 Consensus size: 40
49904720 CGGATGATAA
49904730 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
49904770 CCGGGCTAAGTCCCAAAGGAATTTGTGTGAGTTA-TGATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAT
49904810 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
49904850 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
49904890 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
49904930 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
49904970 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
49904988 TACTTGGGTT
Statistics
Matches: 199, Mismatches: 16, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 17 0.09
40 181 0.91
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:49910737 original size:27 final size:27
Alignment explanation
Indices: 49910565--49910737 Score: 211
Period size: 27 Copynumber: 6.4 Consensus size: 27
49910555 TGGATAAGTT
* * *
49910565 GTAGAATTACTGAAATTCCCCTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
** *
49910592 GTAGAATTATTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
**
49910619 GTAGAATTACTAAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
* *
49910646 ATAGAATTACCGAAATACTCTTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
* *
49910673 GTAGAAATACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
* *
49910700 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCTTGTAGG
*
49910727 GTAAAATTACC
1 GTAGAATTACC
49910738 ATTTTGCCCC
Statistics
Matches: 128, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 128 1.00
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.27
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCTTGTAGG
Found at i:49918123 original size:27 final size:27
Alignment explanation
Indices: 49918083--49918255 Score: 211
Period size: 27 Copynumber: 6.4 Consensus size: 27
49918073 TGGATAAGTT
* *
49918083 GTAGAATTATCGAAATTCCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
49918110 GTAGAATTACCGAAATTCCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
**
49918137 GTAGAATTATTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
49918164 GTAGAATTACAGAAATACCCTTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
49918191 GTAGAAATACCGAAATAACCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
49918218 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
49918245 GTAAAATTACC
1 GTAGAATTACC
49918256 ATTTTGCCCC
Statistics
Matches: 127, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 127 1.00
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:49923498 original size:31 final size:31
Alignment explanation
Indices: 49923455--49923533 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
49923445 TTAAACGATT
*
49923455 ACTGGGCTGAAGCCTTTTCATAATTCATATC
1 ACTGGGCCGAAGCCTTTTCATAATTCATATC
*
49923486 ACTGGGCCGAAGCCTTTTCATTATTCATATC
1 ACTGGGCCGAAGCCTTTTCATAATTCATATC
49923517 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
49923534 ACTGTAAACA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.33
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAATTCATATC
Found at i:49923876 original size:11 final size:11
Alignment explanation
Indices: 49923845--49923892 Score: 57
Period size: 11 Copynumber: 4.6 Consensus size: 11
49923835 ATATGAATAC
49923845 ATCATGTGCAT
1 ATCATGTGCAT
*
49923856 ATCA--TACAT
1 ATCATGTGCAT
49923865 ATCATGTGCAT
1 ATCATGTGCAT
*
49923876 ATCATGT-CAA
1 ATCATGTGCAT
49923886 ATCATGT
1 ATCATGT
49923893 ACATCAAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
9 8 0.25
10 9 0.28
11 15 0.47
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.35
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:49933755 original size:19 final size:19
Alignment explanation
Indices: 49933719--49933757 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
49933709 TTTTCATCAT
* *
49933719 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
49933738 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
49933757 A
1 A
49933758 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:49934242 original size:28 final size:27
Alignment explanation
Indices: 49934210--49934296 Score: 108
Period size: 28 Copynumber: 3.2 Consensus size: 27
49934200 GTGACAGAGT
49934210 CACCAGATACAGATATTTGTGGCAGTGC
1 CACCAGA-ACAGATATTTGTGGCAGTGC
* *
49934238 CACCAGAACA-ATA-TAGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
49934263 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
49934291 CACCAG
1 CACCAG
49934297 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
25 20 0.39
26 5 0.10
27 4 0.08
28 22 0.43
ACGTcount: A:0.33, C:0.24, G:0.24, T:0.18
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:49934447 original size:28 final size:28
Alignment explanation
Indices: 49934400--49934463 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
49934390 AAATTAACCC
*
49934400 TAGGGGTATAGAGGTCATTTTGCATACA
1 TAGGGGTATAGAGGTAATTTTGCATACA
49934428 TAGGGGTATA-ATGGTAATTTTGCATACA
1 TAGGGGTATAGA-GGTAATTTTGCATACA
49934456 TAGGGGTA
1 TAGGGGTA
49934464 CTCTAGTACA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 33 0.97
ACGTcount: A:0.30, C:0.08, G:0.30, T:0.33
Consensus pattern (28 bp):
TAGGGGTATAGAGGTAATTTTGCATACA
Found at i:49940668 original size:48 final size:48
Alignment explanation
Indices: 49940606--49941185 Score: 989
Period size: 48 Copynumber: 12.1 Consensus size: 48
49940596 TATATATGTG
*
49940606 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
49940654 TGTGGTAAAGCCGAATGGCTAACGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
49940702 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
49940750 TGTGGTAAAGCCAAATGGCTAATGTGAAATATATATGAGATATATATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
49940798 TGTGGTAAAGCCGAATGGCTAATGTGAACTATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
49940846 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
49940894 TGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATATATATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
49940942 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
49940990 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATATATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
49941038 TGTGGTAAAGCCAAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
** *
49941086 TGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
49941134 TGTGGTAAATCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
49941182 TGTG
1 TGTG
49941186 AAATATGTAT
Statistics
Matches: 498, Mismatches: 34, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 498 1.00
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.31
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:49941191 original size:26 final size:26
Alignment explanation
Indices: 49941155--49941208 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
49941145 CGAATGGCTA
49941155 ATGTGAAATATGTATGAGATATGTAT
1 ATGTGAAATATGTATGAGATATGTAT
49941181 ATGTGAAATATGTATGAGATATGTAT
1 ATGTGAAATATGTATGAGATATGTAT
49941207 AT
1 AT
49941209 TTGGTAAAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.39, C:0.00, G:0.22, T:0.39
Consensus pattern (26 bp):
ATGTGAAATATGTATGAGATATGTAT
Found at i:49941192 original size:74 final size:74
Alignment explanation
Indices: 49941110--49941248 Score: 235
Period size: 74 Copynumber: 1.9 Consensus size: 74
49941100 ATGGCTAACA
*
49941110 TGAAATATGTATGAGATATATATATGTGGTAAA-TCCGAATGGCTAATGTGAAATATGTATGAGA
1 TGAAATATGTATGAGATATATATATGTGGTAAAGT-CGAATGGCTAATGTGAAATATGTAGGAGA
49941174 TATGTATATG
65 TATGTATATG
* *
49941184 TGAAATATGTATGAGATATGTATATTTGGTAAAGTCGAATGGCTAATGTGAAATATGTAGGAGAT
1 TGAAATATGTATGAGATATATATATGTGGTAAAGTCGAATGGCTAATGTGAAATATGTAGGAGAT
49941249 GTGTGTATAT
Statistics
Matches: 61, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
74 60 0.98
75 1 0.02
ACGTcount: A:0.37, C:0.04, G:0.24, T:0.35
Consensus pattern (74 bp):
TGAAATATGTATGAGATATATATATGTGGTAAAGTCGAATGGCTAATGTGAAATATGTAGGAGAT
ATGTATATG
Found at i:49941433 original size:37 final size:37
Alignment explanation
Indices: 49941389--49941528 Score: 244
Period size: 37 Copynumber: 3.8 Consensus size: 37
49941379 GGAGGTATAT
49941389 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
49941426 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
49941463 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
49941500 TCCAGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
49941529 GGACTATTCG
Statistics
Matches: 98, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 98 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:49945960 original size:19 final size:19
Alignment explanation
Indices: 49945924--49945962 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
49945914 TTTTCATCAT
* *
49945924 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
49945943 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
49945962 A
1 A
49945963 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:49946668 original size:28 final size:28
Alignment explanation
Indices: 49946624--49946684 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
49946614 TTAACCCTAG
*
49946624 GGGTATAGAGGTCATTTTGCATACATAA
1 GGGTATAGAGGTAATTTTGCATACATAA
*
49946652 GGGTATA-ATGGTAATTTTGCATACATAG
1 GGGTATAGA-GGTAATTTTGCATACATAA
49946680 GGGTA
1 GGGTA
49946685 CTCTAGTACA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 1 0.03
28 29 0.97
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.33
Consensus pattern (28 bp):
GGGTATAGAGGTAATTTTGCATACATAA
Found at i:49948488 original size:41 final size:41
Alignment explanation
Indices: 49948385--49948597 Score: 286
Period size: 41 Copynumber: 5.2 Consensus size: 41
49948375 GGGCGTTACA
* * *
49948385 CGGCGTTTTACCGAAAGCGCCACTAAGGCCCT-GTTTTTAG
1 CGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGTTTTTAG
* **
49948425 CTGCGTTTTATAGAAAGCGCCGCTAATGCTCTGGTTTTTAG
1 CGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGTTTTTAG
* * *
49948466 CGGCGTTATACCTAAAGTGCCGCTAATGCTCTGGTTTTTAG
1 CGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGTTTTTAG
* *
49948507 CGGCGTTTTACTGAAAGCGCTGCTAATGCTCTGGTTTTTAG
1 CGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGTTTTTAG
* * *
49948548 TGGCGTTTTACCGAAAGCGCCGCTAATGCTCT-ATTTTTAA
1 CGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGTTTTTAG
49948588 CGGCGTTTTA
1 CGGCGTTTTA
49948598 GTGAAAAACG
Statistics
Matches: 149, Mismatches: 23, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
40 41 0.28
41 108 0.72
ACGTcount: A:0.19, C:0.22, G:0.24, T:0.34
Consensus pattern (41 bp):
CGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGTTTTTAG
Found at i:49948626 original size:122 final size:122
Alignment explanation
Indices: 49948380--49948637 Score: 272
Period size: 122 Copynumber: 2.1 Consensus size: 122
49948370 AATTGGGGCG
*
49948380 TTACACGGCGTTTTACCGAAAGCGCCACTAAGGCCCTGTTTTTAGCTGCGTTTTATAGAAAGCGC
1 TTAC-CGGCGTTTTACCGAAAGCGCCACTAAGGCCCTGTTTTTAGCTGCGTTTTACAGAAAGCGC
* * ** * *
49948445 CGCTAATGCTCTGGTTTTTAGCGGCGTTATACCTAAAGTGCCGCTAATGCTCTGGTTT
65 CGCTAATGCTCTGATTTTTAACGGCGTTATACCTAAAACGCCACTAATGCTCTGATTT
* * ** * * *
49948503 TTAGCGGCGTTTTACTGAAAGCGCTGCTAATGCTCTGGTTTTTAG-TGGCGTTTTACCGAAAGCG
1 TTACCGGCGTTTTACCGAAAGCGCCACTAAGGCCCT-GTTTTTAGCT-GCGTTTTACAGAAAGCG
* * ** *
49948567 CCGCTAATGCTCT-ATTTTTAACGGCGTTTTA-GTGAAAAACGCCACTGTTGTTCT-ATTT
64 CCGCTAATGCTCTGATTTTTAACGGCGTTATACCT--AAAACGCCACTAATGCTCTGATTT
49948625 TTACCGGCGTTTT
1 TTACCGGCGTTTT
49948638 TTTAGAACGC
Statistics
Matches: 111, Mismatches: 20, Indels: 9
0.79 0.14 0.06
Matches are distributed among these distances:
121 1 0.01
122 58 0.52
123 52 0.47
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (122 bp):
TTACCGGCGTTTTACCGAAAGCGCCACTAAGGCCCTGTTTTTAGCTGCGTTTTACAGAAAGCGCC
GCTAATGCTCTGATTTTTAACGGCGTTATACCTAAAACGCCACTAATGCTCTGATTT
Found at i:49953510 original size:40 final size:40
Alignment explanation
Indices: 49953272--49953515 Score: 330
Period size: 40 Copynumber: 6.1 Consensus size: 40
49953262 CAGATGATAA
* * * * *
49953272 CCGGGCTAAGACCCGAAAGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
* *
49953312 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
49953352 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
49953392 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
49953432 CCGGGCTAAGTCCCGAAGGCATTGGTACGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
49953472 CCGGGCTACGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
49953512 CCGG
1 CCGG
49953516 TTAAACTCCG
Statistics
Matches: 187, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 2 0.01
40 185 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:49961050 original size:7 final size:7
Alignment explanation
Indices: 49961034--49961071 Score: 67
Period size: 7 Copynumber: 5.4 Consensus size: 7
49961024 ATATTTTGTC
49961034 ACCCTAA
1 ACCCTAA
*
49961041 ACCTTAA
1 ACCCTAA
49961048 ACCCTAA
1 ACCCTAA
49961055 ACCCTAA
1 ACCCTAA
49961062 ACCCTAA
1 ACCCTAA
49961069 ACC
1 ACC
49961072 ACAAAAATTC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.42, C:0.42, G:0.00, T:0.16
Consensus pattern (7 bp):
ACCCTAA
Found at i:49965285 original size:40 final size:40
Alignment explanation
Indices: 49965201--49965294 Score: 111
Period size: 40 Copynumber: 2.4 Consensus size: 40
49965191 GACTATGTTC
**
49965201 GGCACTAAGTGTGCGGTTCGAAATAGCTTTGGCTACAAAT
1 GGCACTAAGTGTGCGGTTCGAAATAGCTTCAGCTACAAAT
* * *
49965241 GGCACTAAGTGTGCGAGTT-GGAATAGCTTCAGCTATATGA-
1 GGCACTAAGTGTGCG-GTTCGAAATAGCTTCAGCTACA-AAT
49965281 GGCACTAAGTGTGC
1 GGCACTAAGTGTGC
49965295 AATACCGAGA
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
40 43 0.91
41 4 0.09
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.27
Consensus pattern (40 bp):
GGCACTAAGTGTGCGGTTCGAAATAGCTTCAGCTACAAAT
Found at i:49974698 original size:15 final size:15
Alignment explanation
Indices: 49974678--49974713 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
49974668 CATATCTTGG
49974678 GTTTCTTTACTCTGA
1 GTTTCTTTACTCTGA
* *
49974693 GTTTCTTTATTCTGG
1 GTTTCTTTACTCTGA
49974708 GTTTCT
1 GTTTCT
49974714 CTATCTTGGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.08, C:0.17, G:0.17, T:0.58
Consensus pattern (15 bp):
GTTTCTTTACTCTGA
Found at i:49977000 original size:49 final size:49
Alignment explanation
Indices: 49976885--49977071 Score: 275
Period size: 49 Copynumber: 3.8 Consensus size: 49
49976875 TGAGGTCGCA
* * **
49976885 TGTGTAGTACTAAGTGCAGGTTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACG
*
49976935 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
* *
49976984 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
* * *
49977033 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
49977072 GCTTTGGCTA
Statistics
Matches: 126, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
49 89 0.71
50 37 0.29
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
Found at i:49979797 original size:41 final size:41
Alignment explanation
Indices: 49979739--49979816 Score: 138
Period size: 41 Copynumber: 1.9 Consensus size: 41
49979729 ATAGTATGAT
*
49979739 ATTACAAGTATATCAAAAACAACCATTACTAGCCATTTGAC
1 ATTACAAGTATACCAAAAACAACCATTACTAGCCATTTGAC
*
49979780 ATTACAAGTATACCAAAAATAACCATTACTAGCCATT
1 ATTACAAGTATACCAAAAACAACCATTACTAGCCATT
49979817 CTAATGGCTA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.45, C:0.22, G:0.06, T:0.27
Consensus pattern (41 bp):
ATTACAAGTATACCAAAAACAACCATTACTAGCCATTTGAC
Found at i:49988327 original size:43 final size:43
Alignment explanation
Indices: 49988245--49988377 Score: 200
Period size: 43 Copynumber: 3.1 Consensus size: 43
49988235 GTTAAATCCC
* *
49988245 GCAGGCTTCGTGCTAGT-AT-TATATTTGGGCCTTCGTGCCTA
1 GCAGGCTTCGTGCTAGTGATGTGTATTCGGGCCTTCGTGCCTA
*
49988286 GCAGGCTTCGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTCGTGCTAGTGATGTGTATTCGGGCCTTCGTGCCTA
*
49988329 GCAGGCTTCGTG-TCCGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTCGTGCT-AGTGATGTGTATTCGGGCCTTCGTGCCTA
49988372 GCAGGC
1 GCAGGC
49988378 GTAATGCCGG
Statistics
Matches: 85, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
41 16 0.19
42 3 0.04
43 66 0.78
ACGTcount: A:0.11, C:0.24, G:0.32, T:0.32
Consensus pattern (43 bp):
GCAGGCTTCGTGCTAGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:49993775 original size:38 final size:38
Alignment explanation
Indices: 49993683--49993790 Score: 135
Period size: 38 Copynumber: 2.8 Consensus size: 38
49993673 AGCTTAAAGA
* ** * *
49993683 CCCGCAGGCTTCGTACTGGTAAAATATCCAGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
*
49993721 CCCGCAAGCTTCGTGCTGGTATTATATCCGGGATAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
* * *
49993759 CCCGCAGGCCTAGTGCTGGTATTATATTCGGG
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGG
49993791 CCTTTGTGCC
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 60 1.00
ACGTcount: A:0.23, C:0.24, G:0.25, T:0.28
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
Found at i:49993843 original size:43 final size:41
Alignment explanation
Indices: 49993762--49993858 Score: 140
Period size: 43 Copynumber: 2.3 Consensus size: 41
49993752 GATAAATCCC
* * *
49993762 GCAGGCCTAGTGCTGGTATTATATTCGGGCCTTTGTGCCTA
1 GCAGGCTTCGTGCTGGTATTATATTCGGGCCTTCGTGCCTA
*
49993803 GCAGGCTTCGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTCGTGCTGGT-AT-TATATTCGGGCCTTCGTGCCTA
49993846 GCAGGCTTCGTGC
1 GCAGGCTTCGTGC
49993859 CTAGCAGGCG
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
41 15 0.30
42 2 0.04
43 33 0.66
ACGTcount: A:0.11, C:0.24, G:0.33, T:0.32
Consensus pattern (41 bp):
GCAGGCTTCGTGCTGGTATTATATTCGGGCCTTCGTGCCTA
Found at i:49993856 original size:16 final size:16
Alignment explanation
Indices: 49993835--49993867 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
49993825 GTATTCGGGC
49993835 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
49993851 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
49993867 C
1 C
49993868 GTAATGCCGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.12, C:0.33, G:0.30, T:0.24
Consensus pattern (16 bp):
CTTCGTGCCTAGCAGG
Found at i:50005439 original size:46 final size:45
Alignment explanation
Indices: 50005389--50005564 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 45
50005379 TGGTTGAGCA
50005389 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
*** * *
50005434 GTCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 -TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAT
* *
50005482 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T
* * *
50005528 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
50005565 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
44 3 0.03
45 1 0.01
46 68 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
Found at i:50005545 original size:93 final size:93
Alignment explanation
Indices: 50005386--50005556 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
50005376 GGATGGTTGA
* * *
50005386 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATGCCCGAACTCATTGAGT
50005451 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
50005479 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACT-CCCGAGCTCATTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAA-TGCCCGAACTCATTGAG
50005543 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
50005557 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
93 71 0.99
94 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:50008873 original size:20 final size:21
Alignment explanation
Indices: 50008844--50008893 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
50008834 TGAACGATAT
* *
50008844 ATATATTAACATATGTTT-TA
1 ATATAATAACATATATTTCTA
*
50008864 ATATAATAACTTATATTTCTA
1 ATATAATAACATATATTTCTA
*
50008885 ATTTAATAA
1 ATATAATAA
50008894 GTTAACCTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
20 15 0.60
21 10 0.40
ACGTcount: A:0.44, C:0.06, G:0.02, T:0.48
Consensus pattern (21 bp):
ATATAATAACATATATTTCTA
Found at i:50018612 original size:39 final size:39
Alignment explanation
Indices: 50018549--50018824 Score: 399
Period size: 39 Copynumber: 7.1 Consensus size: 39
50018539 AATTTTATTA
* *
50018549 CCAGCACAAAGCCTGTGGGACTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
* *
50018588 CCAGCACGAAGCCTACGGGTCTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
** * * *
50018627 CCAGCATGAAGCCTGCTGGTCTTTGGCCCGGATATATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
*
50018666 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
*
50018705 CCAGCACAAAGCCTGCGAGTCTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
* * * *
50018744 CCAGCACGAAGCCTGCGGGTCTTTGGCCTGGATATATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
* *
50018783 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGAATATATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
50018822 CCA
1 CCA
50018825 TACACATTTC
Statistics
Matches: 211, Mismatches: 26, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 211 1.00
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.25
Consensus pattern (39 bp):
CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
Found at i:50018755 original size:117 final size:117
Alignment explanation
Indices: 50018544--50018824 Score: 463
Period size: 117 Copynumber: 2.4 Consensus size: 117
50018534 CCCGAAATTT
* * * *
50018544 TATTACCAGCACAAAGCCTGTGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTACGGGTC
1 TATTTCCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACAAAGCCTACGAGTC
* *
50018609 TTTAGCCCGGATACATTTCCAGCATGAAGCCTGCTGGTCTTTGGCCCGGATA
66 TTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGTCTTTGGCCCGGATA
*
50018661 TATTTCCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACAAAGCCTGCGAGTC
1 TATTTCCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACAAAGCCTACGAGTC
*
50018726 TTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGTCTTTGGCCTGGATA
66 TTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGTCTTTGGCCCGGATA
* * *
50018778 TATTTCCAGCACAAAGCCTGCGGGTCTTTAGCCCGAATATATTTCCA
1 TATTTCCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCA
50018825 TACACATTTC
Statistics
Matches: 153, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
117 153 1.00
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.25
Consensus pattern (117 bp):
TATTTCCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACAAAGCCTACGAGTC
TTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGTCTTTGGCCCGGATA
Found at i:50034555 original size:47 final size:47
Alignment explanation
Indices: 50034501--50034808 Score: 517
Period size: 47 Copynumber: 6.5 Consensus size: 47
50034491 TATTTGAATA
50034501 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
50034548 AATGTGAAAGTGAATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
50034597 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
50034644 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
50034691 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
50034738 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTTATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
50034785 GATGTGAAAGTGTATAAATGTGAT
1 AATGTGAAAGTGTATATATGTGAT
50034809 GAGTCCCGAA
Statistics
Matches: 249, Mismatches: 10, Indels: 4
0.95 0.04 0.02
Matches are distributed among these distances:
47 202 0.81
49 47 0.19
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:50040675 original size:29 final size:29
Alignment explanation
Indices: 50040611--50040684 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 29
50040601 GTTGTGAGAT
* **
50040611 TGGCACTAAGTGTGCGGGCTTGAAATGGA
1 TGGCACTAAGTGTGCGAGCTTGAAATACA
* *
50040640 TGACACTAAGTGTGCGAG-TTTAAAGTACA
1 TGGCACTAAGTGTGCGAGCTTGAAA-TACA
50040669 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
50040685 TGGTTGATTA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
28 5 0.13
29 33 0.87
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATACA
Found at i:50048790 original size:28 final size:27
Alignment explanation
Indices: 50048758--50048820 Score: 83
Period size: 26 Copynumber: 2.3 Consensus size: 27
50048748 AGTTACTAGA
*
50048758 ATACCCCTAAGTATGGAAAATTACCATT
1 ATACCCCTAAG-ATGGAAAATGACCATT
* *
50048786 ATACCCCT-AGGTGTAAAATGACCATT
1 ATACCCCTAAGATGGAAAATGACCATT
50048812 ATACCCCTA
1 ATACCCCTA
50048821 GGGTTAATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
26 21 0.68
27 2 0.06
28 8 0.26
ACGTcount: A:0.37, C:0.25, G:0.11, T:0.27
Consensus pattern (27 bp):
ATACCCCTAAGATGGAAAATGACCATT
Found at i:50048968 original size:27 final size:27
Alignment explanation
Indices: 50048928--50049039 Score: 145
Period size: 27 Copynumber: 4.1 Consensus size: 27
50048918 AGGAAGCCTC
*
50048928 CTGGTGGCTATGCCACAATTATCTGTT
1 CTGGTGGCTATGCCACAAATATCTGTT
* *
50048955 CTGGTGGCTCTGCCATAAATATCTGTT
1 CTGGTGGCTATGCCACAAATATCTGTT
*
50048982 CTGGTGGCTCTGCCACAAATATCTGTAT
1 CTGGTGGCTATGCCACAAATATCTGT-T
* * *
50049010 CTGGTGACTATGTCAC-ATTATCTGTT
1 CTGGTGGCTATGCCACAAATATCTGTT
50049036 CTGG
1 CTGG
50049040 CAGCCATGCT
Statistics
Matches: 76, Mismatches: 8, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
26 5 0.07
27 57 0.75
28 14 0.18
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTATGCCACAAATATCTGTT
Found at i:50058785 original size:37 final size:37
Alignment explanation
Indices: 50058726--50058827 Score: 168
Period size: 37 Copynumber: 2.8 Consensus size: 37
50058716 AGCTCAGACG
* * *
50058726 AAATCTCCACACGAAGTTATCGGGTCTTACCTGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
50058763 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
50058800 TAATCTCCACACGTAGTCATCGGGTCTT
1 AAATCTCCACACGTAGTCATCGGGTCTT
50058828 TAGAGCTCGG
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:50059024 original size:47 final size:47
Alignment explanation
Indices: 50058946--50059636 Score: 1139
Period size: 47 Copynumber: 14.6 Consensus size: 47
50058936 CCCTTCGGGA
* * * * * *
50058946 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50058993 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50059040 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50059087 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50059134 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50059181 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50059228 CTTATCAAATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50059275 CTTATCACATATATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50059324 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50059371 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50059418 CTTATCACATATATACATTTTCACATTCATCAGATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50059465 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50059514 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50059561 CTTACCACATATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50059610 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
50059637 TATTCAAATA
Statistics
Matches: 603, Mismatches: 35, Indels: 12
0.93 0.05 0.02
Matches are distributed among these distances:
47 470 0.78
49 133 0.22
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:50059400 original size:190 final size:190
Alignment explanation
Indices: 50058946--50059636 Score: 1161
Period size: 190 Copynumber: 3.6 Consensus size: 190
50058936 CCCTTCGGGA
* * * * * * * *
50058946 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
50059011 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
* *
50059076 GGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCGATTAGAC
131 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50059134 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* *
50059199 TTTCACATTCATCACATCGGCTATTAGGCCTTATCAAATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
* *
50059264 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACGTCGGCTATTAGGC
131 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50059324 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* * *
50059389 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACATTTTCACATTCATCAGATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
* *
50059454 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
131 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50059514 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTACCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
50059579 ACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATACACTTTCACATT
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
50059637 TATTCAAATA
Statistics
Matches: 475, Mismatches: 24, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
188 139 0.29
190 273 0.57
192 63 0.13
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.33
Consensus pattern (190 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:50065585 original size:7 final size:7
Alignment explanation
Indices: 50065573--50065612 Score: 57
Period size: 7 Copynumber: 6.0 Consensus size: 7
50065563 TTCAAACTAC
50065573 TTTTTAA
1 TTTTTAA
50065580 TTTTTAA
1 TTTTTAA
50065587 TTTTTAA
1 TTTTTAA
50065594 -TTTT-A
1 TTTTTAA
*
50065599 TTTTTAT
1 TTTTTAA
50065606 TTTTTAA
1 TTTTTAA
50065613 CAGATTTAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
5 1 0.03
6 8 0.28
7 20 0.69
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (7 bp):
TTTTTAA
Found at i:50065603 original size:19 final size:20
Alignment explanation
Indices: 50065574--50065612 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
50065564 TCAAACTACT
50065574 TTTTAATTTTTAATTTTTAA
1 TTTTAATTTTTAATTTTTAA
*
50065594 TTTT-ATTTTTATTTTTTAA
1 TTTTAATTTTTAATTTTTAA
50065613 CAGATTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (20 bp):
TTTTAATTTTTAATTTTTAA
Found at i:50070049 original size:47 final size:46
Alignment explanation
Indices: 50069939--50070063 Score: 146
Period size: 47 Copynumber: 2.7 Consensus size: 46
50069929 GTTATTGTGG
* * *
50069939 GCTAGTGTAAGACATGTCTGGGACATGCATAAGCCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATGACGAGA
* *
50069985 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAG-CATCGA-GACGAGT
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCA-C-ATGACGAGA
*
50070033 GCTAGTGTAAGACATGTTTGGGACATGCATC
1 GCTAGTGTAAGACATGTCTGGGACATGCATC
50070064 GACCTCGAGA
Statistics
Matches: 68, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
46 16 0.24
47 29 0.43
48 22 0.32
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATGACGAGA
Found at i:50070086 original size:46 final size:46
Alignment explanation
Indices: 50069942--50070108 Score: 146
Period size: 46 Copynumber: 3.6 Consensus size: 46
50069932 ATTGTGGGCT
* * *
50069942 AGTGTAAGACATGTCTGGGACATGCATAAGCCA-C-ATTATGAGA-GCC
1 AGTGTAAGACATGTCTGGGACATGCATCAG-CATCGA-GACGA-ATGCC
* *
50069988 AGTGTAAGACCATGTCTGGGACATGGCATCAGCATCGAGACGAGTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCATCGAGACGAATGCC
* * *
50070036 AGTGTAAGACATGTTTGGGACATGCATC-GACCTCGAGACATAAT-CC
1 AGTGTAAGACATGTCTGGGACATGCATCAG-CATCGAGAC-GAATGCC
* *
50070082 AGTGTAAAACATGTCTAGGACATGCAT
1 AGTGTAAGACATGTCTGGGACATGCAT
50070109 TGGCTACAAG
Statistics
Matches: 101, Mismatches: 13, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
45 1 0.01
46 47 0.47
47 31 0.31
48 21 0.21
49 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCATCGAGACGAATGCC
Found at i:50070195 original size:140 final size:141
Alignment explanation
Indices: 50069942--50070204 Score: 302
Period size: 140 Copynumber: 1.9 Consensus size: 141
50069932 ATTGTGGGCT
* * **
50069942 AGTGTAAGACATGTCTGGGACATGCATAAGCCACATTATGAGAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAAACATGTCTAGGACATGCATAAGCCACAAGATGAGAGCCAGTGTAAGACCATGTCTGG
* * * * * *
50070007 GACATGGCATCAGCATCGAGACGAGTGCTAGTGTAAGACATGTTTGGGACAT-GCATCGACCTCG
66 GAAATGGCACCAGCATCAAGACGAGTGCTAATGGAAGACATGTCTGGGACATGGCATCGACCTCG
50070071 AGACATAATCC
131 AGACATAATCC
** * * *
50070082 AGTGTAAAACATGTCTAGGACATGCATTGGCTACAAGATGATAGTCAGTGTAAGACCATGTCTGG
1 AGTGTAAAACATGTCTAGGACATGCATAAGCCACAAGATGAGAGCCAGTGTAAGACCATGTCTGG
* *
50070147 GAAATGGCACC-GACAT-AAGA-TA-TAAGCTAATGGAAGACCGTGTCTGGGACATGGCATC
66 GAAATGGCACCAG-CATCAAGACGAGT--GCTAATGGAAGA-CATGTCTGGGACATGGCATC
50070205 AGCACCTTAC
Statistics
Matches: 101, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
137 1 0.01
138 1 0.01
139 14 0.14
140 80 0.79
141 5 0.05
ACGTcount: A:0.32, C:0.19, G:0.27, T:0.22
Consensus pattern (141 bp):
AGTGTAAAACATGTCTAGGACATGCATAAGCCACAAGATGAGAGCCAGTGTAAGACCATGTCTGG
GAAATGGCACCAGCATCAAGACGAGTGCTAATGGAAGACATGTCTGGGACATGGCATCGACCTCG
AGACATAATCC
Found at i:50083703 original size:25 final size:25
Alignment explanation
Indices: 50083627--50083706 Score: 92
Period size: 25 Copynumber: 3.2 Consensus size: 25
50083617 TACGAATTGC
50083627 AGCTCGTGAGAGCTTACCGATTC-T
1 AGCTCGTGAGAGCTTACCGATTCAT
* *
50083651 CAGCTCAT-ATGAGCTTACCGATTTAT
1 -AGCTCGTGA-GAGCTTACCGATTCAT
* *
50083677 AGCTCGTGAAAGCATACCGATTCAT
1 AGCTCGTGAGAGCTTACCGATTCAT
50083702 AGCTC
1 AGCTC
50083707 TTATAAGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
24 1 0.02
25 43 0.93
26 2 0.04
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (25 bp):
AGCTCGTGAGAGCTTACCGATTCAT
Found at i:50083714 original size:25 final size:25
Alignment explanation
Indices: 50083641--50083718 Score: 79
Period size: 25 Copynumber: 3.1 Consensus size: 25
50083631 CGTGAGAGCT
* * *
50083641 TACCGATTC-TCAGCTCATATGAGCT
1 TACCGATTCAT-AGCTCTTATAAGCA
* *
50083666 TACCGATTTATAGCTCGTGA-AAGCA
1 TACCGATTCATAGCTC-TTATAAGCA
50083691 TACCGATTCATAGCTCTTATAAGCA
1 TACCGATTCATAGCTCTTATAAGCA
50083716 TAC
1 TAC
50083719 ATGTACAAGA
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
24 2 0.05
25 39 0.91
26 2 0.05
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.31
Consensus pattern (25 bp):
TACCGATTCATAGCTCTTATAAGCA
Found at i:50087319 original size:30 final size:30
Alignment explanation
Indices: 50087280--50087341 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 30
50087270 GCTGTTACAT
50087280 ACATGGAAAT-GAT-ATTACATGATATATTGAA
1 ACATGGAAATGGATGA-TACATG-TATA-TGAA
50087311 ACAT-GAAATGGATGATACATGTATATGAA
1 ACATGGAAATGGATGATACATGTATATGAA
50087340 AC
1 AC
50087342 TTGCTTAGTG
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
29 6 0.21
30 9 0.31
31 13 0.45
32 1 0.03
ACGTcount: A:0.45, C:0.08, G:0.18, T:0.29
Consensus pattern (30 bp):
ACATGGAAATGGATGATACATGTATATGAA
Found at i:50103135 original size:15 final size:15
Alignment explanation
Indices: 50103115--50103144 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
50103105 AATTTGAGTT
50103115 CTTTTAACTTTGAGC
1 CTTTTAACTTTGAGC
50103130 CTTTTAACTTTGAGC
1 CTTTTAACTTTGAGC
50103145 ATTCGACCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.20, G:0.13, T:0.47
Consensus pattern (15 bp):
CTTTTAACTTTGAGC
Found at i:50105407 original size:33 final size:33
Alignment explanation
Indices: 50105365--50105433 Score: 138
Period size: 33 Copynumber: 2.1 Consensus size: 33
50105355 CAGAAAGGAG
50105365 CCATAATTACCACAACGTCAATCAGTCAACAAC
1 CCATAATTACCACAACGTCAATCAGTCAACAAC
50105398 CCATAATTACCACAACGTCAATCAGTCAACAAC
1 CCATAATTACCACAACGTCAATCAGTCAACAAC
50105431 CCA
1 CCA
50105434 CCGATTAACT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.42, C:0.35, G:0.06, T:0.17
Consensus pattern (33 bp):
CCATAATTACCACAACGTCAATCAGTCAACAAC
Found at i:50113141 original size:40 final size:40
Alignment explanation
Indices: 50113043--50113273 Score: 306
Period size: 40 Copynumber: 5.8 Consensus size: 40
50113033 CATTTGAATG
* * * *
50113043 ATATCCAGGCTAAGTCCCGAAGGCAATTGTGC-TG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
* * *
50113082 TTATCCGGGCCAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* * * *
50113122 ATACCCGGGATAAGACCCGAAGGCAATTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
*
50113162 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
50113202 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
50113242 ATATCCGGGCTAAGACCCGAGGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
50113274 TTGTGGTTAT
Statistics
Matches: 167, Mismatches: 21, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 29 0.17
40 133 0.80
41 5 0.03
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
Found at i:50113190 original size:80 final size:80
Alignment explanation
Indices: 50113053--50113273 Score: 338
Period size: 80 Copynumber: 2.8 Consensus size: 80
50113043 ATATCCAGGC
* *
50113053 TAAGTCCCGAAGGCAATTGTGCT-GTGATTTTATCCGGGCCAAGACCCGAAGGCATTTGTGCGAG
1 TAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
*
50113117 TTGCTATACCCGGGA
66 TTGATATACCCGGGA
50113132 TAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
* *
50113197 TTGATATATCCGGGC
66 TTGATATACCCGGGA
* * * *
50113212 TAAGACCCGAAGGCATTTGTGCGAGTTGA-TATATCCGGGCTAAGACCCGAGGGCATTTGTGC
1 TAAGACCCGAAGGCAATTGTGCTAG-TGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGC
50113274 TTGTGGTTAT
Statistics
Matches: 131, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
79 22 0.17
80 106 0.81
81 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.25
Consensus pattern (80 bp):
TAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
TTGATATACCCGGGA
Found at i:50113256 original size:120 final size:118
Alignment explanation
Indices: 50113043--50113293 Score: 342
Period size: 120 Copynumber: 2.1 Consensus size: 118
50113033 CATTTGAATG
* * *
50113043 ATATCCAGGCTAAGTCCCGAAGGCAATTGTGCTGTGATTTTATCCGGGCCAAGACCCGAAGGCAT
1 ATATCC-GGCTAAGACCCGAAGGCAATTGTGCAGTGATTATATCCGGGCCAAGACCCGAAGGCAT
*
50113108 TTGTGCGAGTTGCTATACCCGGGATAAGACCCGAAGGCAATTGTGCTAGTGATT
65 TTGTGCGAGTTGATATACCCGGGATAAGACCCGAAGGCAATTGTGCTAGTGATT
* * *
50113162 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TATATCCGGGCTAAGACCCGAAGGC
1 ATATCC-GGCTAAGACCCGAAGGCAATTGTGC-AG-TGATTATATCCGGGCCAAGACCCGAAGGC
* * * * * *
50113226 ATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAGGGCATTTGTGCTTGTGGTT
63 ATTTGTGCGAGTTGATATACCCGGGATAAGACCCGAAGGCAATTGTGCTAGTGATT
50113282 ATATCCGGCTAA
1 ATATCCGGCTAA
50113294 ATTCCGAAGA
Statistics
Matches: 115, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
119 34 0.30
120 78 0.68
121 3 0.03
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (118 bp):
ATATCCGGCTAAGACCCGAAGGCAATTGTGCAGTGATTATATCCGGGCCAAGACCCGAAGGCATT
TGTGCGAGTTGATATACCCGGGATAAGACCCGAAGGCAATTGTGCTAGTGATT
Found at i:50121200 original size:40 final size:41
Alignment explanation
Indices: 50121141--50121372 Score: 312
Period size: 40 Copynumber: 5.8 Consensus size: 41
50121131 CATTTGAATG
* * * *
50121141 ATATCCAGGCTAAGTCCCGAAGGCAATTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * *
50121181 TTATCCGGGCCAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * * *
50121221 ATACCCGGGATAAGACCCGAAGGCAATTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
50121261 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
50121301 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
50121341 ATATCCGGGCTAAGACCCGAGGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
50121373 TTGTGGTTAT
Statistics
Matches: 168, Mismatches: 21, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
39 2 0.01
40 161 0.96
41 5 0.03
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
Found at i:50121355 original size:120 final size:119
Alignment explanation
Indices: 50121141--50121392 Score: 353
Period size: 120 Copynumber: 2.1 Consensus size: 119
50121131 CATTTGAATG
* * *
50121141 ATATCCAGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCCAAGACCCGAAGGCA
1 ATATCC-GGCTAAGACCCGAAGGCAATTGTGCGAGTGATTATATCCGGGCCAAGACCCGAAGGCA
*
50121206 TTTGTGCGAGTTGCTATACCCGGGATAAGACCCGAAGGCAATTGTGCTAGTGATT
65 TTTGTGCGAGTTGATATACCCGGGATAAGACCCGAAGGCAATTGTGCTAGTGATT
* * *
50121261 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TATATCCGGGCTAAGACCCGAAGGC
1 ATATCC-GGCTAAGACCCGAAGGCAATTGTGCGAG-TGATTATATCCGGGCCAAGACCCGAAGGC
* * * * * *
50121325 ATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAGGGCATTTGTGCTTGTGGTT
64 ATTTGTGCGAGTTGATATACCCGGGATAAGACCCGAAGGCAATTGTGCTAGTGATT
50121381 ATATCCGGCTAA
1 ATATCCGGCTAA
50121393 ATTCCGAAGA
Statistics
Matches: 116, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
119 6 0.05
120 107 0.92
121 3 0.03
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (119 bp):
ATATCCGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTATATCCGGGCCAAGACCCGAAGGCAT
TTGTGCGAGTTGATATACCCGGGATAAGACCCGAAGGCAATTGTGCTAGTGATT
Found at i:50121388 original size:80 final size:80
Alignment explanation
Indices: 50121141--50121372 Score: 358
Period size: 80 Copynumber: 2.9 Consensus size: 80
50121131 CATTTGAATG
* * *
50121141 ATATCCAGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCCAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
*
50121206 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGAT
* *
50121221 ATACCCGGGATAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
50121286 TTTGTGCGAGTTGAT
66 TTTGTGCGAGTTGAT
* * * *
50121301 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TATATCCGGGCTAAGACCCGAGGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TGATTTTATCCGGGCTAAGACCCGAAGGC
50121365 ATTTGTGC
65 ATTTGTGC
50121373 TTGTGGTTAT
Statistics
Matches: 139, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
80 136 0.98
81 3 0.02
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGAT
Found at i:50125527 original size:47 final size:46
Alignment explanation
Indices: 50125373--50125640 Score: 190
Period size: 47 Copynumber: 5.7 Consensus size: 46
50125363 GGATAAATTA
* * *
50125373 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATGCGTG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATC-TATGT-CGAG
* * * * *
50125423 CTGATGCATGTCCCAGATATGTCTTACACTAGC-A-CAAT-TCTTAG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCTATCTATGTC-GAG
* * *
50125467 CCGATGCGTGTCCCAGACACGTCTTACACTGGCTATCTCTGTCGAAG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCTATCTATGTCG-AG
* * * *
50125514 CCGATGCATGTCCCAGACATGTCTTACTCTGAC-A-CTCATCTCTATG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCTATCT-ATGTCGA-G
* * *
50125560 CCGATGCCATGTCCCAGACATTGTCTTACATTAGCTCTCATAATGT-G-G
1 CCGATG-CATGTCCCAGACA-TGTCTTACACTGGCTATC-T-ATGTCGAG
* * *
50125608 CTGAAGCATGTCCCAGACAGGTCTTACACTGGC
1 CCGATGCATGTCCCAGACATGTCTTACACTGGC
50125641 GCACAACTCA
Statistics
Matches: 171, Mismatches: 35, Indels: 28
0.73 0.15 0.12
Matches are distributed among these distances:
43 1 0.01
44 30 0.18
45 6 0.04
46 25 0.15
47 59 0.35
48 27 0.16
49 13 0.08
50 6 0.04
51 4 0.02
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.28
Consensus pattern (46 bp):
CCGATGCATGTCCCAGACATGTCTTACACTGGCTATCTATGTCGAG
Found at i:50125621 original size:94 final size:93
Alignment explanation
Indices: 50125373--50125637 Score: 283
Period size: 94 Copynumber: 2.8 Consensus size: 93
50125363 GGATAAATTA
* * *
50125373 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATGCGTGCTGATGCATGTCCCA
1 CCGATGCCATGTCCCAGACATCGTCTTACACTGGCTCTCATA-ATGTGAGCTGATGCATGTCCCA
*
50125438 GATATGTCTTACACTAGCACAATTCTTAG
65 GACATGTCTTACACTAGCACAATTCTTAG
* * * *
50125467 CCGATG-CGTGTCCCAGACA-CGTCTTACACTGGCTATC-T-CTGTCGAAGCCGATGCATGTCCC
1 CCGATGCCATGTCCCAGACATCGTCTTACACTGGCTCTCATAATGT-G-AGCTGATGCATGTCCC
* *
50125528 AGACATGTCTTACTCT-G-ACACTCATCTCTATG
64 AGACATGTCTTACACTAGCACAAT--TCT-TA-G
* * * *
50125560 CCGATGCCATGTCCCAGACATTGTCTTACATTAGCTCTCATAATGTG-GCTGAAGCATGTCCCAG
1 CCGATGCCATGTCCCAGACATCGTCTTACACTGGCTCTCATAATGTGAGCTGATGCATGTCCCAG
*
50125624 ACAGGTCTTACACT
66 ACATGTCTTACACT
50125638 GGCGCACAAC
Statistics
Matches: 141, Mismatches: 20, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
89 6 0.04
90 2 0.01
91 32 0.23
92 18 0.13
93 19 0.13
94 45 0.32
95 14 0.10
96 2 0.01
97 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (93 bp):
CCGATGCCATGTCCCAGACATCGTCTTACACTGGCTCTCATAATGTGAGCTGATGCATGTCCCAG
ACATGTCTTACACTAGCACAATTCTTAG
Found at i:50129559 original size:28 final size:28
Alignment explanation
Indices: 50129525--50129608 Score: 132
Period size: 28 Copynumber: 3.0 Consensus size: 28
50129515 GTGAGCAGCC
*
50129525 CAAATATCATAGCTTGTGTGATCAAATT
1 CAAATATCATAGCTTGTGTGAGCAAATT
*
50129553 CAAATATCATAGCATGTGTGAGCAAATT
1 CAAATATCATAGCTTGTGTGAGCAAATT
* *
50129581 CAAATATTACAGCTTGTGTGAGCAAATT
1 CAAATATCATAGCTTGTGTGAGCAAATT
50129609 GAATAATTCT
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 51 1.00
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (28 bp):
CAAATATCATAGCTTGTGTGAGCAAATT
Found at i:50131455 original size:40 final size:40
Alignment explanation
Indices: 50131365--50131518 Score: 157
Period size: 40 Copynumber: 3.9 Consensus size: 40
50131355 TAATTATTTA
* * * * *
50131365 ATGATTTCACATACGTGCTCCTCTTTATACTT-TGTACCC
1 ATGATTGCACATACGTGCCCCTATTTGTACTTCGGTACCC
* * *
50131404 CTGATTGCACATATGTGCCCCTATTTGTACTTCGGTATCC
1 ATGATTGCACATACGTGCCCCTATTTGTACTTCGGTACCC
* ** *
50131444 ATGATTGCACATATGTGCCCCTGGTTGTACTTCGATACCC
1 ATGATTGCACATACGTGCCCCTATTTGTACTTCGGTACCC
* ***
50131484 TTGATTGCACATACGTGCTTTTATTTGTACTTCGG
1 ATGATTGCACATACGTGCCCCTATTTGTACTTCGG
50131519 CAACCCTGAT
Statistics
Matches: 93, Mismatches: 21, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
39 26 0.28
40 67 0.72
ACGTcount: A:0.19, C:0.25, G:0.17, T:0.39
Consensus pattern (40 bp):
ATGATTGCACATACGTGCCCCTATTTGTACTTCGGTACCC
Found at i:50133575 original size:40 final size:40
Alignment explanation
Indices: 50133527--50133794 Score: 439
Period size: 40 Copynumber: 6.7 Consensus size: 40
50133517 ATATATATGC
50133527 CCGGGCTAAGACCCGCAA-GCATTTGTGCGAGTTGATATAT
1 CCGGGCTAAGACCCG-AAGGCATTTGTGCGAGTTGATATAT
*
50133567 CCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATAT
50133607 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATAT
*
50133647 CCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATAT
* *
50133687 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATAT
* * **
50133727 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATGC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATAT
*
50133767 CCGGGCTAAGACCCGAAGGCAATTGTGC
1 CCGGGCTAAGACCCGAAGGCATTTGTGC
50133795 TTGTGGTAAT
Statistics
Matches: 213, Mismatches: 14, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
39 1 0.00
40 212 1.00
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATAT
Found at i:50135285 original size:40 final size:40
Alignment explanation
Indices: 50135173--50135290 Score: 146
Period size: 40 Copynumber: 3.0 Consensus size: 40
50135163 GGGTGTTACA
* * * *
50135173 CTGATTGCACATATGTGCCTCTGTTTGTACTTCGATACCC
1 CTGAATGCACATATGTGCCCCTGTTTGTACTTTGGTACCC
** * *
50135213 CTGAATGCACATATGTGTTCCTATTTTTACTTTGGTACCC
1 CTGAATGCACATATGTGCCCCTGTTTGTACTTTGGTACCC
* *
50135253 CTGAATGCATATACGTGCCCCTGTTTGTACTTTGGTAC
1 CTGAATGCACATATGTGCCCCTGTTTGTACTTTGGTAC
50135291 TCATGATTGC
Statistics
Matches: 64, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 64 1.00
ACGTcount: A:0.19, C:0.25, G:0.18, T:0.39
Consensus pattern (40 bp):
CTGAATGCACATATGTGCCCCTGTTTGTACTTTGGTACCC
Found at i:50136775 original size:20 final size:20
Alignment explanation
Indices: 50136750--50136791 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
50136740 TGACATGTTC
*
50136750 TATAAGTTGTTAGATTATCT
1 TATAAGTTGTTAGATTACCT
50136770 TATAAGTTGTTAGATTACCT
1 TATAAGTTGTTAGATTACCT
50136790 TA
1 TA
50136792 AAATGGTAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.31, C:0.07, G:0.14, T:0.48
Consensus pattern (20 bp):
TATAAGTTGTTAGATTACCT
Done.