Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 154 of 255
Found at i:50142554 original size:132 final size:133
Alignment explanation
Indices: 50142392--50142655 Score: 370
Period size: 134 Copynumber: 2.0 Consensus size: 133
50142382 AGAAACTTCA
* ***
50142392 GAAGACTATGTTATGACAAAGATTATATCCTTTAACAAAG-ATCCATTTTTACTTTGTTTTCAGA
1 GAAGACTATGCTATGACAAAGATTATATCCTTTAACAAAGAATCCATTTTTACTTTGAGCTCAGA
* * * *
50142456 GTCTTAAACTTTTCCAAATGCTGAAAACTTCTTTTTATGTAACTTCTGTGTTTATCTAGAATGTG
66 ATCTCAAACTCTTCCAAATGCTGAAAACTTCTTCTTATGTAACTTCTGTGTTTATCTAGAATGTG
50142521 TTT
131 TTT
* *
50142524 GAAGACTATGCTATGGA-AAAGATTATATCCTTTAGCAAAGATATTCATTTTTACTTTGAGCTCA
1 GAAGACTATGCTAT-GACAAAGATTATATCCTTTAACAAAGA-ATCCATTTTTACTTTGAGCTCA
* * * *
50142588 GAATCTCAAACTCTTCCAAATGCTGGAAACTTCTTCTTCTGTTACTTTTGTGTTTATCTAGAATG
64 GAATCTCAAACTCTTCCAAATGCTGAAAACTTCTTCTTATGTAACTTCTGTGTTTATCTAGAATG
50142653 TGT
129 TGT
50142656 CCGATACTCA
Statistics
Matches: 115, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
132 35 0.30
133 2 0.02
134 78 0.68
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.41
Consensus pattern (133 bp):
GAAGACTATGCTATGACAAAGATTATATCCTTTAACAAAGAATCCATTTTTACTTTGAGCTCAGA
ATCTCAAACTCTTCCAAATGCTGAAAACTTCTTCTTATGTAACTTCTGTGTTTATCTAGAATGTG
TTT
Found at i:50146658 original size:24 final size:25
Alignment explanation
Indices: 50146606--50146652 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 25
50146596 TTAGTAATGA
*
50146606 ATTTGAAAATATAAAATGTTTTTAG
1 ATTTGAAAATATAAAATATTTTTAG
50146631 ATTTGACAAAT-T-AAATATTTTT
1 ATTTGA-AAATATAAAATATTTTT
50146653 GTATTTTTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 9 0.45
25 7 0.35
26 4 0.20
ACGTcount: A:0.43, C:0.02, G:0.09, T:0.47
Consensus pattern (25 bp):
ATTTGAAAATATAAAATATTTTTAG
Found at i:50149440 original size:30 final size:30
Alignment explanation
Indices: 50149382--50149440 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
50149372 ATTTTCGAGC
* **
50149382 CTAGGGGCAAAATAGTCATTTTGTCAAAGT
1 CTAGAGGCAAAATAGTCATTTTACCAAAGT
* *
50149412 CTAGAGGCAAAATGGTCGTTTTACCAAAG
1 CTAGAGGCAAAATAGTCATTTTACCAAAG
50149441 ATATGAATTT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.27
Consensus pattern (30 bp):
CTAGAGGCAAAATAGTCATTTTACCAAAGT
Found at i:50149931 original size:46 final size:45
Alignment explanation
Indices: 50149784--50150000 Score: 183
Period size: 46 Copynumber: 4.7 Consensus size: 45
50149774 TGTGTGAGCT
* ** * *
50149784 AGTGTAAGACATGTCTGAGACATGCATCGGCCATATTATGA-GAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC-TACGA-GACGTGCC
* * * * *
50149830 AGTGTAAGACCATGTCTGGGATATGTGATCGG--TATTGAAACGAGTGCT
1 AGTGTAAGA-CATGTCTGGGACATG-CATCGGCCTA-CGAGAC--GTGCC
50149878 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGACGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTACGAGACGT--GCC
* * *
50149924 AGTGTAAGACATGTTTGGGACATGCATCGG-CTACGAGATGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTACGAGACGTGCC
50149968 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
50150001 ACAGATATGC
Statistics
Matches: 142, Mismatches: 15, Indels: 27
0.77 0.08 0.15
Matches are distributed among these distances:
44 13 0.09
45 18 0.13
46 65 0.46
47 27 0.19
48 19 0.13
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTACGAGACGTGCC
Found at i:50158606 original size:30 final size:29
Alignment explanation
Indices: 50158565--50158628 Score: 101
Period size: 30 Copynumber: 2.2 Consensus size: 29
50158555 ATGAGTCGGA
50158565 AGCTTTAGCACTAAGTGTGCGATATAAACT
1 AGCTTTAGCACTAAGTGTGCGAT-TAAACT
* *
50158595 AGCTTTGGCACTAAGTGTGCGATTTAACT
1 AGCTTTAGCACTAAGTGTGCGATTAAACT
50158624 AGCTT
1 AGCTT
50158629 CGGTTATTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 10 0.31
30 22 0.69
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (29 bp):
AGCTTTAGCACTAAGTGTGCGATTAAACT
Found at i:50172419 original size:27 final size:26
Alignment explanation
Indices: 50172368--50172422 Score: 76
Period size: 25 Copynumber: 2.1 Consensus size: 26
50172358 TGTTTTTAAG
*
50172368 TTTTAAGACTCTGTTTTCAAAATGTGT
1 TTTTAAGA-TCTGTTTTAAAAATGTGT
*
50172395 TTTTAAG-TCTGTTTTAAAAATATGT
1 TTTTAAGATCTGTTTTAAAAATGTGT
50172420 TTT
1 TTT
50172423 ATGCAAGCTC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 19 0.73
27 7 0.27
ACGTcount: A:0.27, C:0.07, G:0.13, T:0.53
Consensus pattern (26 bp):
TTTTAAGATCTGTTTTAAAAATGTGT
Found at i:50172893 original size:49 final size:48
Alignment explanation
Indices: 50172836--50172950 Score: 131
Period size: 49 Copynumber: 2.3 Consensus size: 48
50172826 AGGGTAAGCT
* * * * *
50172836 TGAACATATCTTATGTTCCTCAGCCATTCTGATAAGTGTGTTAGGTTCG
1 TGAACATAT-TTATGTTCCTCAGCCATTCTCATAAATGTGTTAAGTGCA
* *
50172885 TGAACATATTTAATGTTCTTTAGCCATTCTCATAAATGTGTTAAGTGCA
1 TGAACATATTT-ATGTTCCTCAGCCATTCTCATAAATGTGTTAAGTGCA
*
50172934 AGAACATATTTTATGTT
1 TGAACATA-TTTATGTT
50172951 TCTTAGTCGT
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
48 2 0.04
49 51 0.91
50 3 0.05
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.41
Consensus pattern (48 bp):
TGAACATATTTATGTTCCTCAGCCATTCTCATAAATGTGTTAAGTGCA
Found at i:50175881 original size:39 final size:39
Alignment explanation
Indices: 50175764--50175973 Score: 316
Period size: 39 Copynumber: 5.3 Consensus size: 39
50175754 GCTCCTCGTT
* *
50175764 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
50175804 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
50175844 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
*
50175883 CAAATGCCTTCGGGCTTAGCCTGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
50175922 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
50175961 CAAATGCCTTCGG
1 CAAATGCCTTCGG
50175974 ATCTTAGTCC
Statistics
Matches: 160, Mismatches: 8, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
39 112 0.70
40 46 0.29
41 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:50176012 original size:117 final size:119
Alignment explanation
Indices: 50175764--50176021 Score: 316
Period size: 118 Copynumber: 2.2 Consensus size: 119
50175754 GCTCCTCGTT
* * *
50175764 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGACTTAACCC
1 CAAATGCCTTCGGGACTTAGCCTGGAAT-TAGT-ATCTCGCACAAATGCCTTCGGGACTTAACCC
* *
50175827 GGATTTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
64 GGAATTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTAGCA
*
50175883 CAAATGCCTTCGGG-CTTAGCCTGGAATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCTGGAATTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGG
* * * *
50175946 AATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGTA
66 AATTAGTAACTCGCACAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATC-TAGCA
50176002 C-AA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
50176022 CGGACAGCAT
Statistics
Matches: 122, Mismatches: 10, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
117 46 0.38
118 53 0.43
119 23 0.19
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (119 bp):
CAAATGCCTTCGGGACTTAGCCTGGAATTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGG
AATTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTAGCA
Found at i:50183905 original size:39 final size:40
Alignment explanation
Indices: 50183788--50184009 Score: 239
Period size: 39 Copynumber: 5.7 Consensus size: 40
50183778 GCTCCTCGTT
* *
50183788 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * * *
50183828 CAAATGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
50183868 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
*
50183907 CAAATGCCTTCAGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
50183946 C-AATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
50183986 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
50184010 CAGCATTCAA
Statistics
Matches: 162, Mismatches: 12, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
37 2 0.01
38 9 0.06
39 91 0.56
40 58 0.36
41 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:50183970 original size:78 final size:79
Alignment explanation
Indices: 50183788--50183957 Score: 222
Period size: 79 Copynumber: 2.2 Consensus size: 79
50183778 GCTCCTCGTT
* * **
50183788 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTTGGGACTTAACCC
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTCAGGACTTAACCC
*
50183851 GGATTTAGTAACTCGCA
63 GGAATTAGTAACTCGCA
*
50183868 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCAGG-CTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCAGGACTTAACCCGGA
*
50183932 ATTAGTATCTCGCA
66 ATTAGTAACTCGCA
50183946 C-AATGCCTTCGG
1 CAAATGCCTTCGG
50183958 ATCTTAGTCC
Statistics
Matches: 81, Mismatches: 7, Indels: 7
0.85 0.07 0.07
Matches are distributed among these distances:
77 11 0.14
78 25 0.31
79 30 0.37
80 15 0.19
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCAGGACTTAACCCGGA
ATTAGTAACTCGCA
Found at i:50186340 original size:24 final size:24
Alignment explanation
Indices: 50186313--50186358 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
50186303 GAACCTTAAC
50186313 TTGCTCATAATTGACATATGAAAG
1 TTGCTCATAATTGACATATGAAAG
50186337 TTGCTCATAATTGACATATGAA
1 TTGCTCATAATTGACATATGAA
50186359 CCTACCTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.35
Consensus pattern (24 bp):
TTGCTCATAATTGACATATGAAAG
Found at i:50188687 original size:47 final size:45
Alignment explanation
Indices: 50188628--50188754 Score: 161
Period size: 48 Copynumber: 2.8 Consensus size: 45
50188618 TACGTCGCGA
50188628 GGCCAATGCATGTCCCAGACATGTCTTACACTAGCTCTCATTTCAA-T
1 GGCCAATGCATGTCCCAGACATGTCTTACACTAGCTCTCA--T-AAGT
* *
50188675 -GCCAATGCCATGTCCCAGACATGGTCTTACAATGGCTCTCATAATGT
1 GGCCAATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATAA-GT
50188722 GGCCAATGCATGT-CCAGACATGTCTTACACTAG
1 GGCCAATGCATGTCCCAGACATGTCTTACACTAG
50188755 AGCATAAATG
Statistics
Matches: 71, Mismatches: 4, Indels: 12
0.82 0.05 0.14
Matches are distributed among these distances:
45 12 0.17
46 16 0.23
47 20 0.28
48 23 0.32
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (45 bp):
GGCCAATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAAGT
Found at i:50198929 original size:66 final size:66
Alignment explanation
Indices: 50198817--50198943 Score: 157
Period size: 66 Copynumber: 1.9 Consensus size: 66
50198807 TTATTGCATT
* * *
50198817 AATGTCACTGCATGAGTTAATCTTAGATTGCATCCAGAATTGTTGCCGCACTTGATAGCTGCCCA
1 AATGTCACTGCATGAGTGAATCTTAGATTGCATCCAGAATTGTTGCCGCACCTGACAGCTGCCCA
50198882 C
66 C
* * * * * *
50198883 AATGTCACTGTATTAGTGAAT-TCTAGATTGCGTCTATAATTTTTGCCGCACCTGACAGCTG
1 AATGTCACTGCATGAGTGAATCT-TAGATTGCATCCAGAATTGTTGCCGCACCTGACAGCTG
50198944 TCCGGATAAG
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
65 1 0.02
66 50 0.98
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (66 bp):
AATGTCACTGCATGAGTGAATCTTAGATTGCATCCAGAATTGTTGCCGCACCTGACAGCTGCCCA
C
Found at i:50201960 original size:49 final size:49
Alignment explanation
Indices: 50201888--50202031 Score: 191
Period size: 49 Copynumber: 2.9 Consensus size: 49
50201878 GCCGAAGCTA
*
50201888 TCTGGTACGCATAGTAGCCTGCACTTAGAACTACACATGCGACCAACAG-
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC-ACAGT
* * * * *
50201937 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTT
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCACAG--T
*
50201988 TCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
50202032 TCACAATAGA
Statistics
Matches: 80, Mismatches: 12, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
48 4 0.05
49 38 0.47
51 38 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (49 bp):
TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCACAGT
Found at i:50202013 original size:51 final size:49
Alignment explanation
Indices: 50201891--50202031 Score: 176
Period size: 51 Copynumber: 2.8 Consensus size: 49
50201881 GAAGCTATCT
* * *
50201891 GGTACGCATAGTAGCCTGCACTTAGAACTACACATGCGACCAACAGTCT
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCG
* * * *
50201940 GGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCG
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG---TCG
*
50201991 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACC
50202032 TCACAATAGA
Statistics
Matches: 77, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
48 4 0.05
49 35 0.45
51 38 0.49
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (49 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCG
Found at i:50209784 original size:13 final size:13
Alignment explanation
Indices: 50209766--50209790 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50209756 CCTGGCACAT
50209766 GCTCGTGTCCTTG
1 GCTCGTGTCCTTG
50209779 GCTCGTGTCCTT
1 GCTCGTGTCCTT
50209791 CATATGGGCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.32, G:0.28, T:0.40
Consensus pattern (13 bp):
GCTCGTGTCCTTG
Found at i:50210934 original size:46 final size:46
Alignment explanation
Indices: 50210831--50210993 Score: 147
Period size: 46 Copynumber: 3.5 Consensus size: 46
50210821 GTGCCGTTGC
* * * * *
50210831 CATGTTCCAGACATGGTCTTACACT-G-ACACATCTC-GTAGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCACTCGTCTCAAT-GCCGAAG
* * *
50210876 CATGTCCTAGACATGTCTTACACTAGC-TTACGTCTC-ATGGTCGAAG
1 CATGTCCCAGACATGTCTTACACTAGCACT-CGTCTCAAT-GCCGAAG
*
50210922 CATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAATGCCGAAG
*
50210968 TCATGTCCCAGGCATGGTCTTACACT
1 -CATGTCCCAGACAT-GTCTTACACT
50210994 GGATCTCAAA
Statistics
Matches: 97, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
44 10 0.10
45 13 0.13
46 48 0.49
47 16 0.16
48 10 0.10
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAATGCCGAAG
Found at i:50214475 original size:49 final size:49
Alignment explanation
Indices: 50214372--50214498 Score: 166
Period size: 49 Copynumber: 2.6 Consensus size: 49
50214362 TAAGATGCTG
* *
50214372 ATGCCATGTCCCAGACATGGTCTTACACTGGCTTTCATATAGCGAGGCCG
1 ATGCCATGTCCCAGACA-GGTCTTACACTGGCTCTCATATAGCGAGGCCA
* * * *
50214422 ATGCCATGTCCTAGACAGGTCTTACACTGGCTCTCATTTATC-AGTGTCA
1 ATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATATAGCGAG-GCCA
*
50214471 ATGCCATGTCCCAGAGAGGTCTTACACT
1 ATGCCATGTCCCAGACAGGTCTTACACT
50214499 AACACAAAAC
Statistics
Matches: 68, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
48 2 0.03
49 50 0.74
50 16 0.24
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (49 bp):
ATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATATAGCGAGGCCA
Found at i:50214696 original size:48 final size:48
Alignment explanation
Indices: 50214561--50214696 Score: 154
Period size: 48 Copynumber: 2.9 Consensus size: 48
50214551 TATTGCGACA
* * * *
50214561 CCGATGCATGTCCCAGACATGTCTTACACTAGCTCTC--GTCTCAATG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCACACATATCTCAAGG
* * * *
50214607 TCGATGCATGTCCCACACATGTCTTACACT-G-ACTTAAATATCTCGAGG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCAC--ACATATCTCAAGG
50214655 CCGATGCATGTCCCAGACATGTCTTACACTAGCACACATATC
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCACACATATC
50214697 ACCCATTATC
Statistics
Matches: 73, Mismatches: 11, Indels: 10
0.78 0.12 0.11
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 28 0.38
48 40 0.55
49 1 0.01
50 2 0.03
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (48 bp):
CCGATGCATGTCCCAGACATGTCTTACACTAGCACACATATCTCAAGG
Found at i:50218207 original size:40 final size:40
Alignment explanation
Indices: 50218152--50218289 Score: 174
Period size: 40 Copynumber: 3.5 Consensus size: 40
50218142 CGGATGGTAA
*
50218152 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCGACTATA-T
**
50218192 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCGACTATAT
* * *
50218232 CCGGGATAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCGA-CTATAT
*
50218272 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
50218290 TACTTGGTTT
Statistics
Matches: 89, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
39 16 0.18
40 72 0.81
41 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCGACTATAT
Found at i:50226187 original size:40 final size:40
Alignment explanation
Indices: 50226132--50226309 Score: 272
Period size: 40 Copynumber: 4.5 Consensus size: 40
50226122 CGGATGGTAA
* **
50226132 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
50226172 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
50226212 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
50226252 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
50226292 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
50226310 TACTTGGTTT
Statistics
Matches: 131, Mismatches: 5, Indels: 5
0.93 0.04 0.04
Matches are distributed among these distances:
39 17 0.13
40 113 0.86
41 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:50233782 original size:49 final size:49
Alignment explanation
Indices: 50233677--50233899 Score: 151
Period size: 49 Copynumber: 4.7 Consensus size: 49
50233667 GGGTTAAGAT
* *
50233677 GCCGACGTCATGTCCCAGACATGGTCTTACATTGGCTTTCATATAGCGAG
1 GCCGATGTCATGTCCCAGACA-GGTCTTACACTGGCTTTCATATAGCGAG
* *
50233727 GCCGATGTCATGTCCCAGACAGGTCTTACACTGGCTCTT-ATTTATC-AG
1 GCCGATGTCATGTCCCAGACAGGTCTTACACTGGCT-TTCATATAGCGAG
* * * * * * * *
50233775 TGTCGATGCCATGTTCCAGAAAGGTCTTACACTGAC--ACACA-A-C-AA
1 -GCCGATGTCATGTCCCAGACAGGTCTTACACTGGCTTTCATATAGCGAG
* * * * *
50233820 GCTGACGCCATGTCGCAGACAGGTCTTACACTAGCTTGT-ATATCA-CGAG
1 GCCGATGTCATGTCCCAGACAGGTCTTACACTGGCTT-TCATAT-AGCGAG
* * *
50233869 GCCGGTG-CATGTCCTAGACATGTCTTACACT
1 GCCGATGTCATGTCCCAGACAGGTCTTACACT
50233900 AGCTCTCGTC
Statistics
Matches: 134, Mismatches: 30, Indels: 20
0.73 0.16 0.11
Matches are distributed among these distances:
44 27 0.20
45 2 0.01
46 3 0.02
47 1 0.01
48 25 0.19
49 54 0.40
50 22 0.16
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (49 bp):
GCCGATGTCATGTCCCAGACAGGTCTTACACTGGCTTTCATATAGCGAG
Found at i:50237904 original size:14 final size:14
Alignment explanation
Indices: 50237885--50237913 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
50237875 TGATTCAATT
50237885 TCTACTATTTTTGG
1 TCTACTATTTTTGG
50237899 TCTACTATTTTTGG
1 TCTACTATTTTTGG
50237913 T
1 T
50237914 GATTTTTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.14, T:0.59
Consensus pattern (14 bp):
TCTACTATTTTTGG
Found at i:50247119 original size:30 final size:31
Alignment explanation
Indices: 50247068--50247126 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
50247058 CACCCTTAAA
* * *
50247068 ATATTTGCACTATTAGTCCTTCAACTTTTTC
1 ATATTTACACTATTAATCCTTCAAATTTTTC
50247099 ATATTTACACT-TTAATCCTTCAAATTTT
1 ATATTTACACTATTAATCCTTCAAATTTT
50247127 GAGTATTTAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 15 0.60
31 10 0.40
ACGTcount: A:0.27, C:0.20, G:0.03, T:0.49
Consensus pattern (31 bp):
ATATTTACACTATTAATCCTTCAAATTTTTC
Found at i:50247134 original size:30 final size:31
Alignment explanation
Indices: 50247068--50247136 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 31
50247058 CACCCTTAAA
* * *
50247068 ATATTTGCACTATTAGTCCTTCAACTTTTTC
1 ATATTTACACTATTAATCCTTCAACATTTTC
*
50247099 ATATTTACACT-TTAATCCTTCAA-ATTTTG
1 ATATTTACACTATTAATCCTTCAACATTTTC
50247128 AGTATTTAC
1 A-TATTTAC
50247137 TCTTGGGCCA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 5 0.15
30 18 0.55
31 10 0.30
ACGTcount: A:0.28, C:0.19, G:0.06, T:0.48
Consensus pattern (31 bp):
ATATTTACACTATTAATCCTTCAACATTTTC
Found at i:50248691 original size:53 final size:53
Alignment explanation
Indices: 50248517--50248723 Score: 168
Period size: 53 Copynumber: 3.8 Consensus size: 53
50248507 ATTAGCGTTT
* * * * * *
50248517 AAGGATTCCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTC-TACTAGGA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAAATGGTAAGTTCATA--AGGC
* * * * * * * *
50248571 AAGAAAATCATGTAAGACCATGTCAAGACAT-GACATTGATAAACTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGA-AATGGT-AAGTTC-ATAAGGC
* * *
50248626 AAAGAT-CGCATGTAAGACCATGCCAAGGCATGGAAATGGTGAGTTCATAAGGC
1 AAGGATAC-CATGTAAGACCATGCCAAGACATGGAAATGGTAAGTTCATAAGGC
* *
50248679 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAAATGGTAAGTT
50248724 TAAAAAGGAA
Statistics
Matches: 118, Mismatches: 28, Indels: 15
0.73 0.17 0.09
Matches are distributed among these distances:
53 46 0.39
54 33 0.28
55 35 0.30
56 2 0.02
57 2 0.02
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGAAATGGTAAGTTCATAAGGC
Found at i:50257297 original size:40 final size:40
Alignment explanation
Indices: 50257228--50257404 Score: 180
Period size: 40 Copynumber: 4.5 Consensus size: 40
50257218 CGGATGATAA
* * *
50257228 CCGGACTAAGATCCGAAGGCATTCGTGCTAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGCTATAT
* * * * *
50257268 CCAGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTG-CTATAT
* * *
50257308 CTGGGCTAAGACCCGAAGGCATTTGTACAAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGCTATAT
* * *
50257348 CCGGGATAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGCTATAT
*
50257388 -CTGGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
50257405 ATACTTGGGT
Statistics
Matches: 111, Mismatches: 23, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
38 1 0.01
39 15 0.14
40 93 0.84
41 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGCTATAT
Found at i:50257366 original size:80 final size:79
Alignment explanation
Indices: 50257233--50257404 Score: 213
Period size: 80 Copynumber: 2.2 Consensus size: 79
50257223 GATAACCGGA
* * * * * * *
50257233 CTAAGATCCGAAGGCATTCGTGCTAGTTGCTATATCCAGGCTATGTCCCGAAGGCATTTATGCTA
1 CTAAGACCCGAAGGCATTCGTACAAGTTGCTATATCCAGGATAAGACCCGAAGGCATTTATGCGA
50257298 G-TGATTATATCTGGG
66 GTTG-TTATATCT-GG
* * *
50257313 CTAAGACCCGAAGGCATTTGTACAAGTTGCTATATCCGGGATAAGACCCGAAGGCATTTGTGCGA
1 CTAAGACCCGAAGGCATTCGTACAAGTTGCTATATCCAGGATAAGACCCGAAGGCATTTATGCGA
50257378 GTTGTTATATCTGG
66 GTTGTTATATCTGG
50257392 CTAA-ATCCCGAAG
1 CTAAGA-CCCGAAG
50257405 ATACTTGGGT
Statistics
Matches: 80, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
79 13 0.16
80 64 0.80
81 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.28
Consensus pattern (79 bp):
CTAAGACCCGAAGGCATTCGTACAAGTTGCTATATCCAGGATAAGACCCGAAGGCATTTATGCGA
GTTGTTATATCTGG
Found at i:50259669 original size:40 final size:40
Alignment explanation
Indices: 50259439--50259670 Score: 290
Period size: 40 Copynumber: 5.8 Consensus size: 40
50259429 CATTTGAATG
* * *
50259439 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
* * * * *
50259479 TTATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
*
50259519 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
50259559 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* *
50259599 ATATCCGAGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* * *
50259639 AT-CCCTGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCC-GGGCTAAGACCCGAAGGCATTTGTGC
50259671 TTGTGGTTAT
Statistics
Matches: 174, Mismatches: 16, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 169 0.97
41 3 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
Found at i:50261734 original size:27 final size:27
Alignment explanation
Indices: 50261698--50261853 Score: 197
Period size: 27 Copynumber: 5.7 Consensus size: 27
50261688 GTGCTATAAA
* *
50261698 TCAACTCGCACACTTAGTGCCACATAA
1 TCAAATCGCACACTTAGTGCCACATAG
*
50261725 TCAAATCGCACACTTAGTGCTACATAG
1 TCAAATCGCACACTTAGTGCCACATAG
* *
50261752 TCAAACTCGCACACTTAGTGCCGCATGG
1 TCAAA-TCGCACACTTAGTGCCACATAG
* *
50261780 TCAATTCGCACACTTAGTG-CATCATAT
1 TCAAATCGCACACTTAGTGCCA-CATAG
** *
50261807 TCATTTCGCACACTTAGTGCAACATAG
1 TCAAATCGCACACTTAGTGCCACATAG
50261834 TCAAATCGCACACTTAGTGC
1 TCAAATCGCACACTTAGTGC
50261854 TGTACAATTT
Statistics
Matches: 111, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
26 1 0.01
27 86 0.77
28 24 0.22
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
TCAAATCGCACACTTAGTGCCACATAG
Found at i:50261762 original size:55 final size:55
Alignment explanation
Indices: 50261680--50261854 Score: 223
Period size: 55 Copynumber: 3.2 Consensus size: 55
50261670 ATCGAGCCCA
* * *
50261680 CACACTCAGTGCTAT-A-AATCAACTCGCACACTTAGTGCCACATAATCAAATCG
1 CACACTTAGTGCTATCATAGTCAACTCGCACACTTAGTGCCACATAGTCAAATCG
* * *
50261733 CACACTTAGTGCTA-CATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATTCG
1 CACACTTAGTGCTATCATAGTC-AACTCGCACACTTAGTGCCACATAGTCAAATCG
* ** *
50261788 CACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCG
1 CACACTTAGTGCTATCATAGTCAACTCGCACACTTAGTGCCACATAGTCAAATCG
50261842 CACACTTAGTGCT
1 CACACTTAGTGCT
50261855 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 8
0.83 0.10 0.06
Matches are distributed among these distances:
53 14 0.13
54 43 0.41
55 47 0.45
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (55 bp):
CACACTTAGTGCTATCATAGTCAACTCGCACACTTAGTGCCACATAGTCAAATCG
Found at i:50261795 original size:82 final size:81
Alignment explanation
Indices: 50261698--50261853 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
50261688 GTGCTATAAA
*
50261698 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGC
1 TCAACTCGCACACTTAGTG-CATCATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGC
50261762 ACACTTAGTGCCGCATGG
64 ACACTTAGTGCCGCATGG
* * **
50261780 TCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCAC
1 TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
50261845 ACTTAGTGC
66 ACTTAGTGC
50261854 TGTACAATTT
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 17 0.25
82 51 0.75
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:50269677 original size:27 final size:27
Alignment explanation
Indices: 50269647--50269824 Score: 153
Period size: 27 Copynumber: 6.6 Consensus size: 27
50269637 ATATTGAGCC
* *
50269647 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
50269674 CGCACACTAAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
50269701 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
50269729 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
50269756 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * * *
50269783 CACACACTTAGGGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
50269810 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
50269825 GTACAATTTA
Statistics
Matches: 124, Mismatches: 23, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
27 99 0.80
28 25 0.20
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:50271677 original size:6 final size:6
Alignment explanation
Indices: 50271659--50271696 Score: 60
Period size: 6 Copynumber: 6.3 Consensus size: 6
50271649 AAAAAACATT
50271659 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAGA AT
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT
50271697 TAGGTGACAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 1 0.03
6 28 0.93
7 1 0.03
ACGTcount: A:0.50, C:0.16, G:0.16, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:50271742 original size:31 final size:31
Alignment explanation
Indices: 50271673--50271776 Score: 93
Period size: 31 Copynumber: 3.4 Consensus size: 31
50271663 GAACTAGAAT
* * * * * *
50271673 CAGAATCAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAAAATGAGAATCAGTATCAAGTAA
* * *
50271704 CAAAATCAGAATCGA-AATTAGTATCAAGTAA
1 CAGAATCAAAAT-GAGAATCAGTATCAAGTAA
* *
50271735 CAGAATCAAAATTAGAATCAGTATCAGGTAA
1 CAGAATCAAAATGAGAATCAGTATCAAGTAA
50271766 CAGAATCAAAA
1 CAGAATCAAAA
50271777 ATCAGAATGT
Statistics
Matches: 59, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
30 1 0.02
31 57 0.97
32 1 0.02
ACGTcount: A:0.50, C:0.13, G:0.16, T:0.20
Consensus pattern (31 bp):
CAGAATCAAAATGAGAATCAGTATCAAGTAA
Found at i:50271963 original size:27 final size:26
Alignment explanation
Indices: 50271921--50271981 Score: 86
Period size: 27 Copynumber: 2.3 Consensus size: 26
50271911 GCTCAGTTAT
*
50271921 CAGATATTGTGACAGAGACACTAGATA
1 CAGATATTGTGACAGAGACACCAGA-A
* *
50271948 CAGATATTGTGGCAGAGTCACCAGAA
1 CAGATATTGTGACAGAGACACCAGAA
50271974 CAGATATT
1 CAGATATT
50271982 TCTGACATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
26 9 0.29
27 22 0.71
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACAGAGACACCAGAA
Found at i:50273318 original size:27 final size:27
Alignment explanation
Indices: 50272686--50273311 Score: 746
Period size: 27 Copynumber: 23.4 Consensus size: 27
50272676 TTACCCCATG
* *
50272686 AGGGTATCTCGGTAATTCTACCCTACA
1 AGGGTATTTCGGTATTTCTACCCTACA
* *
50272713 GGGGTATTTCGATATTTCTACCCTACA
1 AGGGTATTTCGGTATTTCTACCCTACA
*
50272740 AGGGTATTTCAGTATTTCTATCCC-ACA
1 AGGGTATTTCGGTATTTCTA-CCCTACA
* ** *
50272767 GGGGTATTTCAATAATTCTACCCTACA
1 AGGGTATTTCGGTATTTCTACCCTACA
*
50272794 AGGG-ATTTCGGTATTTCTACCTTACA
1 AGGGTATTTCGGTATTTCTACCCTACA
*
50272820 AGGGTATTTCGGTATTTCAACCCTACA
1 AGGGTATTTCGGTATTTCTACCCTACA
50272847 AGGGTATTTCGGTATTTCTACCCTACA
1 AGGGTATTTCGGTATTTCTACCCTACA
*
50272874 AGGGTATTTCGGTAATTCTACCCTACA
1 AGGGTATTTCGGTATTTCTACCCTACA
*
50272901 AGGTTATTTCGGTATTTCTACCCTACA
1 AGGGTATTTCGGTATTTCTACCCTACA
* * *
50272928 AGGGCATTTCAGTATTTCAACCCTACA
1 AGGGTATTTCGGTATTTCTACCCTACA
* *
50272955 AGGGTATTTCGATATTTCTATCCTAC-
1 AGGGTATTTCGGTATTTCTACCCTACA
** * *
50272981 AGAGGTATTTCCATAATTCTACCCTAGA
1 AG-GGTATTTCGGTATTTCTACCCTACA
* *
50273009 GGGGTATTTCGGAATTTCT----TACA
1 AGGGTATTTCGGTATTTCTACCCTACA
* *
50273032 AGGGTATTTTGGTAATTCTACCCTACA
1 AGGGTATTTCGGTATTTCTACCCTACA
* ** * * *
50273059 GGGGTATTTCAATAATTCTACCATACG
1 AGGGTATTTCGGTATTTCTACCCTACA
* *
50273086 GGGGTATTTCAGTATTTCTACCCTACA
1 AGGGTATTTCGGTATTTCTACCCTACA
*
50273113 AGGGTATTTCGATATTTCTACCCTACA
1 AGGGTATTTCGGTATTTCTACCCTACA
*
50273140 AGGGTATTTCGGTAATTCTACCCTACA
1 AGGGTATTTCGGTATTTCTACCCTACA
* * * *
50273167 GGGGTATTTCAGTAATTCTACCATAC-
1 AGGGTATTTCGGTATTTCTACCCTACA
50273193 AGGGTTATTTCGGTATTTCTACCCTACA
1 AGGG-TATTTCGGTATTTCTACCCTACA
*
50273221 AGGGTATTTCGGTATTTCAACCCTACA
1 AGGGTATTTCGGTATTTCTACCCTACA
* *
50273248 AGGGTGTTTCGGTATTTCTATCCTACA
1 AGGGTATTTCGGTATTTCTACCCTACA
** *
50273275 AGGGTATTTCAATAATTCTACCCTACA
1 AGGGTATTTCGGTATTTCTACCCTACA
*
50273302 GGGGTATTTC
1 AGGGTATTTC
50273312 AATAATTTTG
Statistics
Matches: 512, Mismatches: 76, Indels: 22
0.84 0.12 0.04
Matches are distributed among these distances:
23 18 0.04
26 30 0.06
27 456 0.89
28 8 0.02
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (27 bp):
AGGGTATTTCGGTATTTCTACCCTACA
Found at i:50273384 original size:54 final size:54
Alignment explanation
Indices: 50273303--50273540 Score: 184
Period size: 54 Copynumber: 4.4 Consensus size: 54
50273293 TACCCTACAG
* ** * * * *
50273303 GGGTATTTCAATAATTTTGTAAATCGAGTGTAAAAT-GGTAATTCTGTAAATTGG
1 GGGTATTTCGATAATTTTACAAATCGAGGGT-AAATCAGTAATTCTGTAAACTGA
* ** *
50273357 GGGTACTTT-GATAATTTTACAAGTCGAGGGTATTTCAGTAATTTTGTAAACTGA
1 GGGTA-TTTCGATAATTTTACAAATCGAGGGTAAATCAGTAATTCTGTAAACTGA
**
50273411 GGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATT-T-TACAA-TCGA
1 GGGTATTTCGATAATTTTACAAATCGAGGGTAAATCAGTAATTCTGTA-AACT-GA
* * ** * *
50273464 CGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATT-T-TACAAATCA
1 GGGTATTTCGATAATTTTACAAATCGAGGGTAAATCAGTAATTCTGTA-AACTGA
* *
50273517 GGGGTATTTTGGTAATTTTACAAA
1 -GGGTATTTCGATAATTTTACAAA
50273541 CAGGGGGTAT
Statistics
Matches: 160, Mismatches: 17, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
52 3 0.02
53 58 0.36
54 96 0.60
55 3 0.02
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.39
Consensus pattern (54 bp):
GGGTATTTCGATAATTTTACAAATCGAGGGTAAATCAGTAATTCTGTAAACTGA
Found at i:50273683 original size:27 final size:27
Alignment explanation
Indices: 50273357--50273696 Score: 299
Period size: 27 Copynumber: 12.6 Consensus size: 27
50273347 TGTAAATTGG
* * ** *
50273357 GGGTACTTTGATAATTTTACAAGTCGA
1 GGGTATTTTGGTAATTTTACAAACCAA
** ** **
50273384 GGGTATTTCAGTAATTTTGTAAACTGA
1 GGGTATTTTGGTAATTTTACAAACCAA
* * * *
50273411 GGGTATTTCGATAATTTTACAAATCGA
1 GGGTATTTTGGTAATTTTACAAACCAA
** * *
50273438 GGGTATTTCAGTAATTTTAC-AATCGA
1 GGGTATTTTGGTAATTTTACAAACCAA
* * * *
50273464 CGGTATTTCGGTAATTTTACAAATCGA
1 GGGTATTTTGGTAATTTTACAAACCAA
** * *
50273491 GGGTATTTCAGTAATTTTACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAA
*
50273518 GGGTATTTTGGTAATTTTACAAA-CAGG
1 GGGTATTTTGGTAATTTTACAAACCA-A
* * *
50273545 GGGTATTTTGATTATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAA
50273572 GGGTATTTTGGTAATTTTACAAA-CAA
1 GGGTATTTTGGTAATTTTACAAACCAA
* *
50273598 GTGGTATTTTGGTAATTTTATAAACAAA
1 G-GGTATTTTGGTAATTTTACAAACCAA
* *
50273626 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAA
** *
50273653 GGGTATTTTGGTAATTTTGTAAGCCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
50273680 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
50273697 GGTAGACTAA
Statistics
Matches: 267, Mismatches: 41, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
26 29 0.11
27 233 0.87
28 5 0.02
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAA
Found at i:50274681 original size:30 final size:30
Alignment explanation
Indices: 50274627--50274688 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
50274617 TACCGCTGCG
*
50274627 CACTCTGATCCTACTATCACTATCATACTT
1 CACTCTGATCCTACTATCACTATCACACTT
*
50274657 CACTCTGATCCTACTATCATTATCACACTT
1 CACTCTGATCCTACTATCACTATCACACTT
50274687 CA
1 CA
50274689 ACTAGAACTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.27, C:0.34, G:0.03, T:0.35
Consensus pattern (30 bp):
CACTCTGATCCTACTATCACTATCACACTT
Found at i:50275699 original size:6 final size:6
Alignment explanation
Indices: 50275688--50275823 Score: 57
Period size: 6 Copynumber: 21.8 Consensus size: 6
50275678 AACTAAAATT
* * * *
50275688 AGAATC AGAATC AGAATT AGGCGA-C AGAATC ATAATC -GAAATC AGGATC
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AG-AATC AGAATC
* * * *
50275737 AGGTAA-C AGAATC AAAATC AAAATC AGTATC AGGTAA-C AGAATC AAAATC
1 A-G-AATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC
* *
50275787 AGAATC AGTATC AGGTAA-C AGAATC AAAAATC AGAAT
1 AGAATC AGAATC A-G-AATC AGAATC -AGAATC AGAAT
50275824 GTGAATGCAA
Statistics
Matches: 97, Mismatches: 18, Indels: 30
0.67 0.12 0.21
Matches are distributed among these distances:
5 7 0.07
6 69 0.71
7 17 0.18
8 4 0.04
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.18
Consensus pattern (6 bp):
AGAATC
Found at i:50275746 original size:31 final size:30
Alignment explanation
Indices: 50275711--50275815 Score: 165
Period size: 31 Copynumber: 3.4 Consensus size: 30
50275701 GAATTAGGCG
* *
50275711 ACAGAATCATAATCGAAATCAGGATCAGGTA
1 ACAGAATCAAAATC-AAATCAGTATCAGGTA
50275742 ACAGAATCAAAATCAAAATCAGTATCAGGTA
1 ACAGAATCAAAATC-AAATCAGTATCAGGTA
50275773 ACAGAATCAAAATCAGAATCAGTATCAGGTA
1 ACAGAATCAAAATCA-AATCAGTATCAGGTA
50275804 ACAGAATCAAAA
1 ACAGAATCAAAA
50275816 ATCAGAATGT
Statistics
Matches: 70, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
30 1 0.01
31 69 0.99
ACGTcount: A:0.50, C:0.16, G:0.15, T:0.18
Consensus pattern (30 bp):
ACAGAATCAAAATCAAATCAGTATCAGGTA
Found at i:50276002 original size:27 final size:26
Alignment explanation
Indices: 50275960--50276054 Score: 73
Period size: 27 Copynumber: 3.5 Consensus size: 26
50275950 GCTCAGTTAT
* * *
50275960 CAGATATTGTGACAGAGACACTAGATA
1 CAGATTTTGTGGCAGAGACACCAGA-A
*
50275987 CAGATTTTGTGGCAGAGCCACCAGAA
1 CAGATTTTGTGGCAGAGACACCAGAA
* * * *
50276013 CATATATTTGTGGCATAGCCACCAAAAA
1 CAGAT-TTTGTGGCAGAGACACC-AGAA
**
50276041 CAGATAATGTGGCA
1 CAGATTTTGTGGCA
50276055 AAGCCACTTA
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
26 5 0.09
27 44 0.79
28 7 0.12
ACGTcount: A:0.37, C:0.19, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATTTTGTGGCAGAGACACCAGAA
Found at i:50276059 original size:27 final size:27
Alignment explanation
Indices: 50275986--50276061 Score: 75
Period size: 27 Copynumber: 2.9 Consensus size: 27
50275976 GACACTAGAT
* * *
50275986 ACAGAT-TTTGTGGCAGAGCCACCAGA
1 ACAGATATATGTGGCAAAGCCACCAAA
* * *
50276012 ACATATATTTGTGGCATAGCCACCAAAA
1 ACAGATATATGTGGCAAAGCCACC-AAA
50276040 ACAGATA-ATGTGGCAAAGCCAC
1 ACAGATATATGTGGCAAAGCCAC
50276062 TTAACAGAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
26 5 0.12
27 29 0.69
28 8 0.19
ACGTcount: A:0.37, C:0.22, G:0.21, T:0.20
Consensus pattern (27 bp):
ACAGATATATGTGGCAAAGCCACCAAA
Found at i:50276257 original size:22 final size:22
Alignment explanation
Indices: 50276220--50276284 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
50276210 GCAAATACGT
*
50276220 TTGACACACAGCCATAATCAGG
1 TTGACACAAAGCCATAATCAGG
* * * *
50276242 TTGGCATAGAGCCAT-ATGTAGG
1 TTGACACAAAGCCATAAT-CAGG
50276264 TTGACACAAAGCCATAATCAG
1 TTGACACAAAGCCATAATCAG
50276285 AAGGCTTTAA
Statistics
Matches: 33, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
21 2 0.06
22 29 0.88
23 2 0.06
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.22
Consensus pattern (22 bp):
TTGACACAAAGCCATAATCAGG
Found at i:50277521 original size:27 final size:27
Alignment explanation
Indices: 50276715--50277520 Score: 974
Period size: 27 Copynumber: 29.9 Consensus size: 27
50276705 CAAAATGGTA
* * *
50276715 ATTT-TACCCCACGAGGGTATCTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
*
50276741 AATTCTACCCTACAAGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
*
50276768 ATTTCTACCCTACAAGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
*
50276795 ATTTCAACCCTACAAGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
*
50276822 ATTTCTACCCTACAAGGGTATTTTGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* * * *
50276849 AATTCTACCCTACATGGTTATATCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
50276876 ATTTCTACCCTACAAGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* **
50276903 ATTTCAACCCTACAAGGGTATTTCAAT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* * **
50276930 ATTTCTATCCTACAGGGGTATTTCAAT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* *
50276957 AATTCTACCCTAC-AGGGCTATTTCGAT
1 ATTTCTACCCTACAAGGG-TATTTCGGT
*
50276984 ATTTCTACCCTACAAGGGCATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* * *
50277011 AATTT-TATCCTACAGGGGTATTTCAGT
1 -ATTTCTACCCTACAAGGGTATTTCGGT
* * * *
50277038 AATTCTACCATACAGGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
50277065 ATTTCTACCCTACAAGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* *
50277092 ATTTCTACCTTACAAGGGTATTTTGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* * *
50277119 AATTCTACCCTACAGGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* *
50277146 AATTCTACCCTAC-AGGGTTATTTTGGT
1 ATTTCTACCCTACAAGGG-TATTTCGGT
*
50277173 ATTTCTACCCTACAAGGGTATTTTGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
*
50277200 ATTTCAACCCTACAAGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* * **
50277227 ATTTCTATCCTACAGGGGTATTTCAAT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* *
50277254 AATTCTACCCTACAGGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
*
50277281 ATTTCTACCCTACAATGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* * *
50277308 AATTT-TACCCTATAGGGGTATTTCAGT
1 -ATTTCTACCCTACAAGGGTATTTCGGT
* *
50277335 AATTCTACCCTACAGGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
50277362 ATTTCTACCCTACAAGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* * * **
50277389 AATTCTACCCTGCAGGGGTATTTTAGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* * *
50277416 AATTCTACCCTACAGGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* * *
50277443 AATTCTATCCTACAAGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* *
50277470 ATTTCTACCCTACAAGAGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
*
50277497 ATTTCTACCCTGCAAGGGTATTTC
1 ATTTCTACCCTACAAGGGTATTTC
50277521 AATAATTTTG
Statistics
Matches: 680, Mismatches: 91, Indels: 17
0.86 0.12 0.02
Matches are distributed among these distances:
26 15 0.02
27 649 0.95
28 16 0.02
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.37
Consensus pattern (27 bp):
ATTTCTACCCTACAAGGGTATTTCGGT
Found at i:50277659 original size:80 final size:79
Alignment explanation
Indices: 50277567--50277884 Score: 335
Period size: 80 Copynumber: 4.0 Consensus size: 79
50277557 GTAAATTGGG
* *
50277567 GGTACTTTGATAATTTTACAAGTC-GAGGGTATTTCAGTAATTTTACAAA-TGAGGGTATTTTAG
1 GGTA-TTTGATAATTTTACAAATCAG-GGGTATTTTAGTAATTTTACAAACTGAGGGTATTTTAG
*
50277630 TAATTTTGCAAACTGA
64 TAATTTTACAAACTGA
* * * *
50277646 GGTTATTTCGATAATTTTACAAATCTA-GGGTATTTTAGTAATTTTACAATC-GATGATATTTCA
1 GG-TATTT-GATAATTTTACAAATC-AGGGGTATTTTAGTAATTTTACAAACTGAGGGTATTTTA
50277709 GTAATTTTACAAA-TCGA
63 GTAATTTTACAAACT-GA
* *
50277726 GGGTATTTTAGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACT-AGGGGTATTTT-
1 -GGTATTTGA-TAATTTTACAAATCAGGGGTATTTTAGTAATTTTACAAACTGA-GGGTATTTTA
*
50277789 GATAATTTTACAAACCAGA
63 G-TAATTTTACAAA-CTGA
* * * * **
50277808 GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGT
1 GGTA-TTTGATAATTTTACAAATCAGGGGTATTTTAGTAATTTTACAAACTGAGGGTATTTTAGT
50277873 AATTTTACAAAC
65 AATTTTACAAAC
50277885 CAGGGGTATT
Statistics
Matches: 203, Mismatches: 19, Indels: 33
0.80 0.07 0.13
Matches are distributed among these distances:
79 8 0.04
80 105 0.52
81 83 0.41
82 7 0.03
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.40
Consensus pattern (79 bp):
GGTATTTGATAATTTTACAAATCAGGGGTATTTTAGTAATTTTACAAACTGAGGGTATTTTAGTA
ATTTTACAAACTGA
Found at i:50277826 original size:81 final size:81
Alignment explanation
Indices: 50277567--50277928 Score: 371
Period size: 81 Copynumber: 4.5 Consensus size: 81
50277557 GTAAATTGGG
* * * **
50277567 GGTACTTTGATAATTTTACAAGTC-GAGGGTATTTCAGTAATTTTACAAA-T-GAGGGTATTTTA
1 GGTATTTTGGTAATTTTACAAATCAG-GGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTA
* *
50277629 GTAATTTTGCAAA-CTGA
64 GTAATTTTACAAACCAGA
* * * * * * * *
50277646 GGTTATTTCGATAATTTTACAAATCTA-GGGTATTTTAGTAATTTTACAATCGA-TGATATTTCA
1 GG-TATTTTGGTAATTTTACAAATC-AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTA
*
50277709 GTAATTTTACAAATC-GA
64 GTAATTTTACAAACCAGA
*
50277726 GGGTATTTTAGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTT-G
1 -GGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAG
50277790 ATAATTTTACAAACCAGA
65 -TAATTTTACAAACCAGA
* * * *
50277808 GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGT
1 GGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGT
*
50277873 AATTTTACAAACCAGG
66 AATTTTACAAACCAGA
** ** *
50277889 GGTATTTTGGTAATTTTGTAAGCCAAGGGTATTTTGGTAA
1 GGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAA
50277929 ACTAAAGTAT
Statistics
Matches: 241, Mismatches: 30, Indels: 22
0.82 0.10 0.08
Matches are distributed among these distances:
79 3 0.01
80 104 0.43
81 131 0.54
82 3 0.01
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (81 bp):
GGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGT
AATTTTACAAACCAGA
Found at i:50277918 original size:27 final size:27
Alignment explanation
Indices: 50277566--50277928 Score: 327
Period size: 27 Copynumber: 13.5 Consensus size: 27
50277556 TGTAAATTGG
* * ** *
50277566 GGGTACTTTGATAATTTTACAAGTCGA
1 GGGTATTTTGGTAATTTTACAAACCAA
** **
50277593 GGGTATTTCAGTAATTTTACAAA-TGA
1 GGGTATTTTGGTAATTTTACAAACCAA
* * **
50277619 GGGTATTTTAGTAATTTTGCAAACTGA
1 GGGTATTTTGGTAATTTTACAAACCAA
* * * * *
50277646 GGTTATTTCGATAATTTTACAAATCTA
1 GGGTATTTTGGTAATTTTACAAACCAA
* * *
50277673 GGGTATTTTAGTAATTTTAC-AATCGA
1 GGGTATTTTGGTAATTTTACAAACCAA
* * ** * *
50277699 TGATATTTCAGTAATTTTACAAATCGA
1 GGGTATTTTGGTAATTTTACAAACCAA
* * *
50277726 GGGTATTTTAGTAATTTTACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAA
* *
50277753 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAA
*
50277780 GGGTATTTTGATAATTTTACAAACC-A
1 GGGTATTTTGGTAATTTTACAAACCAA
*
50277806 GAGGTATTTTGGTAATTTTACAAACCAG
1 G-GGTATTTTGGTAATTTTACAAACCAA
* *
50277834 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTACAAACCAA
* *
50277861 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAA
** *
50277888 GGGTATTTTGGTAATTTTGTAAGCCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
50277915 GGGTATTTTGGTAA
1 GGGTATTTTGGTAA
50277929 ACTAAAGTAT
Statistics
Matches: 283, Mismatches: 49, Indels: 8
0.83 0.14 0.02
Matches are distributed among these distances:
26 46 0.16
27 236 0.83
28 1 0.00
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAA
Found at i:50278889 original size:30 final size:30
Alignment explanation
Indices: 50278855--50278916 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
50278845 TACTGTTGCG
50278855 CACTCTGATCCTACTATCACTATCACACTT
1 CACTCTGATCCTACTATCACTATCACACTT
50278885 CACTCTGATCCTACTATCACTATCACACTT
1 CACTCTGATCCTACTATCACTATCACACTT
50278915 CA
1 CA
50278917 ACTAGAACTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.27, C:0.37, G:0.03, T:0.32
Consensus pattern (30 bp):
CACTCTGATCCTACTATCACTATCACACTT
Found at i:50279941 original size:6 final size:6
Alignment explanation
Indices: 50279930--50280047 Score: 62
Period size: 6 Copynumber: 19.0 Consensus size: 6
50279920 AATTAGGTGA
* * * * *
50279930 CAGAAT CAGAAT CGGAAT CAGTAT CAGTAT CAGGTAA- CAGAAT GAAAAT
1 CAGAAT CAGAAT CAGAAT CAGAAT CAGAAT CA-G-AAT CAGAAT CAGAAT
* * * *
50279979 CAAAAT CAGTAT CAGGTAA- CAGAAT CAAAAT CAGAAT CAGTAT CAGCTAA-
1 CAGAAT CAGAAT CA-G-AAT CAGAAT CAGAAT CAGAAT CAGAAT CAG--AAT
*
50280029 CAGAAT CAAAACT CAGAAT
1 CAGAAT CAGAA-T CAGAAT
50280048 GTGAATGCAA
Statistics
Matches: 86, Mismatches: 16, Indels: 20
0.70 0.13 0.16
Matches are distributed among these distances:
5 6 0.07
6 63 0.73
7 14 0.16
8 3 0.03
ACGTcount: A:0.47, C:0.17, G:0.16, T:0.19
Consensus pattern (6 bp):
CAGAAT
Found at i:50279971 original size:31 final size:31
Alignment explanation
Indices: 50279936--50280047 Score: 145
Period size: 31 Copynumber: 3.6 Consensus size: 31
50279926 GTGACAGAAT
* *
50279936 CAGAATCGGAATCAGTATCAGTATCAGGTAA
1 CAGAATCGAAATCAGAATCAGTATCAGGTAA
*
50279967 CAGAAT-GAAAATCAAAATCAGTATCAGGTAA
1 CAGAATCG-AAATCAGAATCAGTATCAGGTAA
* *
50279998 CAGAATCAAAATCAGAATCAGTATCAGCTAA
1 CAGAATCGAAATCAGAATCAGTATCAGGTAA
*
50280029 CAGAATCAAAACTCAGAAT
1 CAGAATCGAAA-TCAGAAT
50280048 GTGAATGCAA
Statistics
Matches: 72, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
30 1 0.01
31 64 0.89
32 7 0.10
ACGTcount: A:0.47, C:0.17, G:0.16, T:0.20
Consensus pattern (31 bp):
CAGAATCGAAATCAGAATCAGTATCAGGTAA
Found at i:50280225 original size:27 final size:26
Alignment explanation
Indices: 50280183--50280284 Score: 123
Period size: 27 Copynumber: 3.8 Consensus size: 26
50280173 GCTCAGTTAT
* *
50280183 CAGATATTGTGACAGAGACACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
50280210 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
* *
50280236 CAGATATTTATGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* *
50280264 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
50280285 TTAACAAAAT
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 7 0.11
27 51 0.77
28 8 0.12
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.18
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:50280471 original size:22 final size:22
Alignment explanation
Indices: 50280443--50280506 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
50280433 GCAAATACGT
*
50280443 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
50280465 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
* *
50280487 TTGACAAAAAGCCATAATCA
1 TTGGCACAAAGCCATAATCA
50280507 AAAGGCTTTA
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
21 2 0.06
22 30 0.88
23 2 0.06
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:50280964 original size:27 final size:27
Alignment explanation
Indices: 50280938--50281579 Score: 788
Period size: 27 Copynumber: 23.8 Consensus size: 27
50280928 CAAAATGGTA
* * *
50280938 ATTT-TACCCCACGAGGGTATCTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
** * * *
50280964 AACTCTACCCTACAGGGGTATTTTGAT
1 ATTTCTACCCTACAAGGGTATTTCGGT
50280991 ATTTCTACCCTACAAGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* * **
50281018 ATTTCTATCCTACAGGGGTATTTCAAT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* *
50281045 AATTCTACCCTA-AAGGGGTATTTCTGT
1 ATTTCTACCCTACAA-GGGTATTTCGGT
50281072 ATTTCTACCCTACAAGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
*
50281099 ATTTCAACCCTACAAGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
*
50281126 ATTTCTACCCTACAAGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
*
50281153 AATTCTACCCTAC-AGGGTTATTTCGGT
1 ATTTCTACCCTACAAGGG-TATTTCGGT
50281180 ATTTCTACCCTACAAGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
*
50281207 ATTTCAACCCTACAAGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* * **
50281234 ATTTCTATCCTACACGGGTATTTCAAT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* * *
50281261 AATTCTACCCTATAGGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* * *
50281288 AATTCTACCTTACAAGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* * **
50281315 AATTCTACCCTACAGGGGTATTTCAAT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* *
50281342 AATTCTACCCTACAGGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* *
50281369 ATTTCTACCCTACAAGGGCATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
50281396 ATTTCTACCCTACAAGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* * * *
50281423 AATTCTACCCTATAGGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* *
50281450 AATTCTACCCTAC-AGGGTTATTTCGAT
1 ATTTCTACCCTACAAGGG-TATTTCGGT
*
50281477 ATTTCTACCTTACAAGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
*
50281504 ATTTCAACCCTACAAGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* * **
50281531 ATTTCTATCCTACAGGGGTATTTCAAT
1 ATTTCTACCCTACAAGGGTATTTCGGT
*
50281558 AATTCTACCCTACAAGGGTATT
1 ATTTCTACCCTACAAGGGTATT
50281580 CAATAATTTT
Statistics
Matches: 531, Mismatches: 78, Indels: 13
0.85 0.13 0.02
Matches are distributed among these distances:
26 10 0.02
27 511 0.96
28 10 0.02
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.36
Consensus pattern (27 bp):
ATTTCTACCCTACAAGGGTATTTCGGT
Found at i:50281946 original size:81 final size:82
Alignment explanation
Indices: 50281625--50281992 Score: 360
Period size: 81 Copynumber: 4.5 Consensus size: 82
50281615 CTATAAATTT
* * * ** * *
50281625 GGGGTACTTTGATAATTTTACAAGTC-GAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTC
1 GGGGTATTTTGGTAATTTTACAAATCAG-GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTT
* *
50281689 AG-TAATTTTGCAAA-CT
65 AGATAATTTTACAAACCA
* *** ** *
50281705 GAGGTTATTTCAATAATTTTACAAATC-GAGGGTATTTCAGTAATTTTAC-AATCAATGGTA-TT
1 G-GGGTATTTTGGTAATTTTACAAATCAG-GGGTATTTTGGTAATTTTACAAATCAAGGGTATTT
* *
50281767 TCGATAATTTTACAAATC-
64 TAGATAATTTTACAAACCA
** **
50281785 GAGGGTATTTCAGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAA-CTGGGGGTATTT
1 G-GGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATC-AAGGGTATTT
50281849 T-GATAATTTTACAAACCA
64 TAGATAATTTTACAAACCA
* * *
50281867 GGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAATAAAGGGTATTTTA
1 GGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTA
50281932 G-TAATTTTACAAACCA
66 GATAATTTTACAAACCA
** * *
50281948 GGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTT
1 GGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTT
50281993 GGTAAACTAA
Statistics
Matches: 250, Mismatches: 28, Indels: 19
0.84 0.09 0.06
Matches are distributed among these distances:
79 3 0.01
80 65 0.26
81 177 0.71
82 5 0.02
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (82 bp):
GGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTA
GATAATTTTACAAACCA
Found at i:50281999 original size:27 final size:27
Alignment explanation
Indices: 50281625--50281992 Score: 307
Period size: 27 Copynumber: 13.7 Consensus size: 27
50281615 CTATAAATTT
* * **
50281625 GGGGTACTTTGATAATTTTACAAGTC-
1 GGGGTATTTTGGTAATTTTACAAACCA
** *
50281651 GAGGGTATTTCAGTAATTTTACAAATC-
1 G-GGGTATTTTGGTAATTTTACAAACCA
** * *
50281678 GAGGGTATTTCAGTAATTTTGCAAA-CT
1 G-GGGTATTTTGGTAATTTTACAAACCA
* *** *
50281705 GAGGTTATTTCAATAATTTTACAAATC-
1 G-GGGTATTTTGGTAATTTTACAAACCA
** *
50281732 GAGGGTATTTCAGTAATTTTAC-AATCA
1 G-GGGTATTTTGGTAATTTTACAAACCA
** * * *
50281759 ATGGTATTTCGATAATTTTACAAATC-
1 GGGGTATTTTGGTAATTTTACAAACCA
** *
50281785 GAGGGTATTTCAGTAATTTTACAAATCA
1 G-GGGTATTTTGGTAATTTTACAAACCA
**
50281813 GGGGTATTTTGGTAATTTTACAAACTG
1 GGGGTATTTTGGTAATTTTACAAACCA
*
50281840 GGGGTATTTTGATAATTTTACAAACCA
1 GGGGTATTTTGGTAATTTTACAAACCA
50281867 GGGGTATTTTGGTAATTTTACAAACCA
1 GGGGTATTTTGGTAATTTTACAAACCA
* **
50281894 GGGGTATTTTGGTAATTTTATAAATAA
1 GGGGTATTTTGGTAATTTTACAAACCA
* *
50281921 AGGGTATTTTAGTAATTTTACAAACCA
1 GGGGTATTTTGGTAATTTTACAAACCA
**
50281948 GGGGTATTTTGGTAATTTTGTAAACCA
1 GGGGTATTTTGGTAATTTTACAAACCA
*
50281975 AGGGTATTTTGGTAATTT
1 GGGGTATTTTGGTAATTT
50281993 GGTAAACTAA
Statistics
Matches: 294, Mismatches: 41, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
26 23 0.08
27 269 0.91
28 2 0.01
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
GGGGTATTTTGGTAATTTTACAAACCA
Found at i:50288500 original size:47 final size:46
Alignment explanation
Indices: 50288346--50288657 Score: 226
Period size: 47 Copynumber: 6.7 Consensus size: 46
50288336 AGGATAAATT
* * * *
50288346 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGTTCTCATATATGCG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTC-TCTGTGAG
* * * * *
50288395 TGCTGATGCATGTCCCAGACATGTATTACACTAGCACAACTCT-T-A-
1 -GCCGATGCATGTCCCAGACATGTCTTACACTGGCTC-TCTCTGTGAG
* * * *
50288440 GTCGATGCGTGTCCCGGACACGTCTTACACTGGCTCTCTCTGTTGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCTCTG-TGAG
* * **
50288487 GCCGATGCATGTCCCAGACATGTCTTACTCTGGCACTCAT-AAT-ATG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTC-TCTGTGA-G
* * * * *
50288533 GCTGAAGCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTG-GAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTC-TCTGTGAG
*
50288579 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGT--G
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTC-T-CTGTGAG
* *
50288627 GCCGAAGCATGTCCCAGATATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
50288658 AGCGTACAAA
Statistics
Matches: 206, Mismatches: 43, Indels: 30
0.74 0.15 0.11
Matches are distributed among these distances:
43 4 0.02
44 28 0.14
45 2 0.01
46 52 0.25
47 61 0.30
48 36 0.17
49 17 0.08
50 6 0.03
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCTCTGTGAG
Found at i:50288631 original size:140 final size:138
Alignment explanation
Indices: 50288346--50288657 Score: 353
Period size: 140 Copynumber: 2.2 Consensus size: 138
50288336 AGGATAAATT
** *
50288346 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGTTCTCATATATGCGTGCTGATGCATGTCCC
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATATAT-CGTGCTGAAGCATGTCCC
* * * *
50288411 AGACATGTATTACACTAGCACAACTCTTAGTCGATGCGTGTCCCGGACACGTCTTACACTGGCTC
63 AGACATGTATTACACTAGCACAACTCTGAGCCGATGCATGTCCCAGACACGTCTTACACTGGCTC
* **
50288476 TCTCTGTTGAG
128 TCTATAATGAG
*
50288487 GCCGATGCATGTCCCAGACATGTCTTACTCTGGCACTCATAATAT-G-GCTGAAGCATGTCCCAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCAT-ATATCGTGCTGAAGCATGTCCCAG
* ** *
50288550 ACATGTCTTACACTAGC-CCTCGTCTGGATGCCGATGCCATGTCCCAGACATGGTCTTACACTGG
65 ACATGTATTACACTAGCACAAC-TCT-GA-GCCGATG-CATGTCCCAGACA-CGTCTTACACTGG
*
50288614 CTCTC-ATAATGTG
125 CTCTCTATAATGAG
* *
50288627 GCCGAAGCATGTCCCAGATATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
50288658 AGCGTACAAA
Statistics
Matches: 146, Mismatches: 19, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
136 2 0.01
137 35 0.24
138 2 0.01
139 22 0.15
140 61 0.42
141 24 0.16
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (138 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATATATCGTGCTGAAGCATGTCCCAGA
CATGTATTACACTAGCACAACTCTGAGCCGATGCATGTCCCAGACACGTCTTACACTGGCTCTCT
ATAATGAG
Found at i:50288640 original size:94 final size:92
Alignment explanation
Indices: 50288449--50288660 Score: 291
Period size: 94 Copynumber: 2.3 Consensus size: 92
50288439 AGTCGATGCG
* * * *
50288449 TGTCCCGGACACGTCTTACACTGGCTCTCTCTGTTGAGGCCGATGCATGTCCCAGACATGTCTTA
1 TGTCCCAGACATGTCTTACACTAGCCCTCTCTG-TGAGGCCGATGCATGTCCCAGACATGTCTTA
* *
50288514 CTCTGGCACTCATAATATGGCTGAAGCA
65 CACTGGCACTCATAATATGGCCGAAGCA
*
50288542 TGTCCCAGACATGTCTTACACTAGCCCTCGTCTG-GATGCCGATGCCATGTCCCAGACATGGTCT
1 TGTCCCAGACATGTCTTACACTAGCCCTC-TCTGTGAGGCCGATG-CATGTCCCAGACAT-GTCT
* *
50288606 TACACTGGCTCTCATAATGTGGCCGAAGCA
63 TACACTGGCACTCATAATATGGCCGAAGCA
*
50288636 TGTCCCAGATATGTCTTACACTAGC
1 TGTCCCAGACATGTCTTACACTAGC
50288661 GTACAAATCA
Statistics
Matches: 106, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
92 9 0.08
93 39 0.37
94 58 0.55
ACGTcount: A:0.21, C:0.30, G:0.22, T:0.27
Consensus pattern (92 bp):
TGTCCCAGACATGTCTTACACTAGCCCTCTCTGTGAGGCCGATGCATGTCCCAGACATGTCTTAC
ACTGGCACTCATAATATGGCCGAAGCA
Found at i:50288790 original size:15 final size:17
Alignment explanation
Indices: 50288770--50288801 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
50288760 TATAACTTAA
50288770 CAATTC-AT-ACAATAT
1 CAATTCAATGACAATAT
50288785 CAATTCAATGACAATAT
1 CAATTCAATGACAATAT
50288802 GAATACAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 2 0.13
17 7 0.47
ACGTcount: A:0.47, C:0.19, G:0.03, T:0.31
Consensus pattern (17 bp):
CAATTCAATGACAATAT
Found at i:50292408 original size:30 final size:30
Alignment explanation
Indices: 50292372--50292431 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
50292362 TTCCCGAGCC
*
50292372 TAGGGGCAAAAGTGTAA-TTATGCAAAAGTT
1 TAGGGGCAAAAATGTAAGTT-TGCAAAAGTT
*
50292402 TAGGGGCAAAAATGTAAGTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAAGTTTGCAAAAGTT
50292432 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 25 0.93
31 2 0.07
ACGTcount: A:0.38, C:0.08, G:0.27, T:0.27
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAAGTTTGCAAAAGTT
Found at i:50298069 original size:13 final size:13
Alignment explanation
Indices: 50298047--50298079 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
50298037 AAGGGTTTGT
50298047 TTAT-TAAACTAA
1 TTATCTAAACTAA
50298059 TTATCTAAACTAA
1 TTATCTAAACTAA
*
50298072 TTAACTAA
1 TTATCTAA
50298080 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:50302415 original size:37 final size:37
Alignment explanation
Indices: 50302365--50302480 Score: 196
Period size: 37 Copynumber: 3.1 Consensus size: 37
50302355 TTATTACGAA
* * * *
50302365 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
50302402 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
50302439 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
50302476 GTCTT
1 GTCTT
50302481 TAGAGCTCGG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 75 1.00
ACGTcount: A:0.26, C:0.33, G:0.19, T:0.22
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
Found at i:50302870 original size:47 final size:47
Alignment explanation
Indices: 50302599--50302849 Score: 403
Period size: 47 Copynumber: 5.3 Consensus size: 47
50302589 CCCTTCGGGA
* * * * * *
50302599 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50302646 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50302693 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50302740 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50302787 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACA--TATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50302836 CTTATCTCATATAT
1 CTTATCACATATAT
50302850 GCATGTTTAC
Statistics
Matches: 191, Mismatches: 11, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
47 145 0.76
49 46 0.24
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:50306427 original size:80 final size:80
Alignment explanation
Indices: 50306219--50306441 Score: 234
Period size: 80 Copynumber: 2.8 Consensus size: 80
50306209 CCAGCATGGT
* * * * * * * * *** *
50306219 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATA
1 TGCTCTTCGGAACTTAGTCCAGATACATCACTAGCACGAAAGCTCTTCGGAACTTAGCCCGGATA
**
50306284 TTTCACTAGCACGAA
66 CATCACTAGCACGAA
* * *
50306299 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
1 TGCTCTTCGGAACTTAGTCCAGATACATCACTAGCACGAAAGCTCTTCGGAACTTAGCCCGGATA
50306364 CATCACTAGCACGAA
66 CATCACTAGCACGAA
** *
50306379 TGCTCTTCGGAACTTAGTCCAGATATGGTCACTTAGCAC-AAAGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGAACTTAGTCCAGATA-CATCAC-TAGCACGAAAGCTCTTCGGAACTTAGCCCGGA
50306442 CATCATTCAA
Statistics
Matches: 122, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
80 108 0.89
81 8 0.07
82 6 0.05
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
TGCTCTTCGGAACTTAGTCCAGATACATCACTAGCACGAAAGCTCTTCGGAACTTAGCCCGGATA
CATCACTAGCACGAA
Found at i:50306434 original size:120 final size:120
Alignment explanation
Indices: 50306219--50306441 Score: 272
Period size: 120 Copynumber: 1.9 Consensus size: 120
50306209 CCAGCATGGT
* * *** *
50306219 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATA
1 TGCTCTTCGGAACCTAGCCCGGATACAACACCAGCACGAATGCTCTTCGGAACTTAGCACAGATA
* * *
50306284 TTTCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
66 TGTCACTAGCACGAAAGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* * * *
50306339 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTC-CAGAT
1 TGCTCTTCGGAACCTAGCCCGGATACAACACCAGCACGAATGCTCTTCGGAACTTAG-CACAGAT
*
50306403 ATGGTCACTTAGCAC-AAAGC-CTTCGGGACTTAGCCCGGA
65 AT-GTCAC-TAGCACGAAAGCTCTTCGGAACTTAGCCCGGA
50306442 CATCATTCAA
Statistics
Matches: 86, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
120 71 0.83
121 9 0.10
122 6 0.07
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
TGCTCTTCGGAACCTAGCCCGGATACAACACCAGCACGAATGCTCTTCGGAACTTAGCACAGATA
TGTCACTAGCACGAAAGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
Found at i:50306435 original size:40 final size:40
Alignment explanation
Indices: 50306219--50306403 Score: 246
Period size: 40 Copynumber: 4.6 Consensus size: 40
50306209 CCAGCATGGT
* * * * * *
50306219 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*** **
50306259 TGCTCTTCGGGGTTTAG-CACGGATATTTCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTC-CGGATACATCACTAGCACGAA
50306299 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
50306339 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
50306379 TGCTCTTCGGAACTTAGTCCAGATA
1 TGCTCTTCGGAACTTAGTCCGGATA
50306404 TGGTCACTTA
Statistics
Matches: 131, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 1 0.01
40 129 0.98
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:50306790 original size:29 final size:29
Alignment explanation
Indices: 50306751--50306829 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
50306741 CTTAATAATC
*
50306751 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
50306781 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
50306810 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
50306830 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:50306872 original size:43 final size:43
Alignment explanation
Indices: 50306811--50306913 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
50306801 TGCATTTCAA
50306811 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
50306854 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
50306897 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
50306914 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:50312863 original size:27 final size:27
Alignment explanation
Indices: 50312841--50313105 Score: 299
Period size: 27 Copynumber: 9.8 Consensus size: 27
50312831 CAATTTACAA
50312841 AATTACTGTTTTACCCTCGATTTATAG
1 AATTACTGTTTTACCCTCGATTTATAG
*
50312868 AATTACTGTTTTACCCTC-AGTTTA-CG
1 AATTACTGTTTTACCCTCGA-TTTATAG
*
50312894 AAATTACTGTTTTACCCTTGATTTATAG
1 -AATTACTGTTTTACCCTCGATTTATAG
*
50312922 AATTACCGTTTTACCCTC-AGTTTATAG
1 AATTACTGTTTTACCCTCGA-TTTATAG
50312949 AATTACTGTTTTACCCTCGATTTATAG
1 AATTACTGTTTTACCCTCGATTTATAG
** * *
50312976 AATTACCATTTTACCCTCGATTTGTAA
1 AATTACTGTTTTACCCTCGATTTATAG
* *
50313003 AATTA-TCGTTTTACCCTTGATTTACAG
1 AATTACT-GTTTTACCCTCGATTTATAG
* * *
50313030 AATTACTGGTTTACCCTC-AGTTTACAA
1 AATTACTGTTTTACCCTCGA-TTTATAG
*
50313057 AATTA-TCGTTTTACCCTCAATTTATAG
1 AATTACT-GTTTTACCCTCGATTTATAG
* *
50313084 AATTACCGTTTTACCCTTGATT
1 AATTACTGTTTTACCCTCGATT
50313106 GTGAAATTAC
Statistics
Matches: 201, Mismatches: 25, Indels: 24
0.80 0.10 0.10
Matches are distributed among these distances:
26 5 0.02
27 191 0.95
28 5 0.02
ACGTcount: A:0.27, C:0.20, G:0.10, T:0.43
Consensus pattern (27 bp):
AATTACTGTTTTACCCTCGATTTATAG
Found at i:50312872 original size:54 final size:54
Alignment explanation
Indices: 50312834--50313100 Score: 369
Period size: 54 Copynumber: 4.9 Consensus size: 54
50312824 GTACTCCCAA
*
50312834 TTTACAAAATTACTGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCAG
1 TTTACAAAATTACTGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAG
* *
50312888 TTTACGAAATTACTGTTTTACCCTTGATTTATAGAATTACCGTTTTACCCTCAG
1 TTTACAAAATTACTGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAG
* * *
50312942 TTTATAGAATTACTGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTC-G
1 TTTACAAAATTACTGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAG
** * * * *
50312995 ATTTGTAAAATTA-TCGTTTTACCCTTGATTTACAGAATTACTGGTTTACCCTCAG
1 -TTTACAAAATTACT-GTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAG
*
50313050 TTTACAAAATTA-TCGTTTTACCCTCAATTTATAGAATTACCGTTTTACCCT
1 TTTACAAAATTACT-GTTTTACCCTCGATTTATAGAATTACCGTTTTACCCT
50313101 TGATTGTGAA
Statistics
Matches: 188, Mismatches: 22, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
53 2 0.01
54 185 0.98
55 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.10, T:0.43
Consensus pattern (54 bp):
TTTACAAAATTACTGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAG
Found at i:50312926 original size:81 final size:81
Alignment explanation
Indices: 50312841--50313105 Score: 347
Period size: 81 Copynumber: 3.3 Consensus size: 81
50312831 CAATTTACAA
* *
50312841 AATTACTGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCAGTTTACGAAATTACTGTTT
1 AATTACCGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCAGTTTACAAAATTACTGTTT
*
50312906 TACCCTTGATTTATAG
66 TACCCTCGATTTATAG
* * **
50312922 AATTACCGTTTTACCCTC-AGTTTATAGAATTACTGTTTTACCCTC-GATTTATAGAATTACCAT
1 AATTACCGTTTTACCCTCGA-TTTATAGAATTACTGTTTTACCCTCAG-TTTACAAAATTACTGT
* *
50312985 TTTACCCTCGATTTGTAA
64 TTTACCCTCGATTTATAG
* * * *
50313003 AATTATCGTTTTACCCTTGATTTACAGAATTACTGGTTTACCCTCAGTTTACAAAATTA-TCGTT
1 AATTACCGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCAGTTTACAAAATTACT-GTT
*
50313067 TTACCCTCAATTTATAG
65 TTACCCTCGATTTATAG
*
50313084 AATTACCGTTTTACCCTTGATT
1 AATTACCGTTTTACCCTCGATT
50313106 GTGAAATTAC
Statistics
Matches: 158, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
80 2 0.01
81 154 0.97
82 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.10, T:0.43
Consensus pattern (81 bp):
AATTACCGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCAGTTTACAAAATTACTGTTT
TACCCTCGATTTATAG
Found at i:50313140 original size:27 final size:27
Alignment explanation
Indices: 50313110--50313324 Score: 254
Period size: 27 Copynumber: 8.0 Consensus size: 27
50313100 TTGATTGTGA
*
50313110 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
50313137 AATTTCTGAAATACCCCTATAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
50313164 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
50313191 AATTACTGAAATACCCTTATAGGATAG
1 AATTACTGAAATACCCCTGTAGGGTAG
**
50313218 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
50313245 AATTA-TCGAAATACCCTTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
*
50313272 AAATA-TCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* * * *
50313299 AATTACCGAGATACCCTTGTGGGGTA
1 AATTACTGAAATACCCCTGTAGGGTA
50313325 ACATTACCAT
Statistics
Matches: 163, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
27 163 1.00
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.27
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:50313569 original size:27 final size:26
Alignment explanation
Indices: 50313531--50313613 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
50313521 CGGAGGAAGC
*
50313531 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
50313558 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
50313584 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
50313611 GTT
1 GTT
50313614 GACCGATCGA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 10 0.20
27 41 0.80
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:50313733 original size:22 final size:22
Alignment explanation
Indices: 50313701--50313759 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
50313691 CCCGTTATTA
*
50313701 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
50313723 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
50313745 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
50313760 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:50313946 original size:27 final size:27
Alignment explanation
Indices: 50313924--50313997 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 27
50313914 TAGGTGGGTT
*
50313924 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
50313951 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
** *
50313978 TATCACGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
50313998 CAGCCATGCT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
26 5 0.12
27 35 0.85
28 1 0.02
ACGTcount: A:0.19, C:0.24, G:0.20, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:50314124 original size:6 final size:6
Alignment explanation
Indices: 50314115--50314216 Score: 86
Period size: 6 Copynumber: 16.8 Consensus size: 6
50314105 TTGCATTCAC
* * *
50314115 ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG GTTCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
50314164 -TTACTA ATAT-TG ATTCTA ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG
1 ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
50314212 ATTCT
1 ATTCT
50314217 CATTTTGGTT
Statistics
Matches: 78, Mismatches: 9, Indels: 18
0.74 0.09 0.17
Matches are distributed among these distances:
5 6 0.08
6 65 0.83
7 5 0.06
8 2 0.03
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:50314178 original size:30 final size:30
Alignment explanation
Indices: 50314115--50314216 Score: 143
Period size: 30 Copynumber: 3.4 Consensus size: 30
50314105 TTGCATTCAC
*
50314115 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATTCTG
*
50314146 ATTCTGATTCTGGTTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACTAAT-TCTG
* *
50314176 ATTCTAATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
50314206 ATTCTGATTCT
1 ATTCTGATTCT
50314217 CATTTTGGTT
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
29 1 0.02
30 42 0.67
31 20 0.32
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTG
Found at i:50319807 original size:46 final size:49
Alignment explanation
Indices: 50319698--50319812 Score: 146
Period size: 50 Copynumber: 2.4 Consensus size: 49
50319688 TGTCTTCGAC
** * *
50319698 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCA-ATATATATCTAAT
* *
50319748 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-AT-T-TATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATCTAAT
50319794 ATGGACTTACATGGCTCAT
1 ATGGACTTACATGGCTCAT
50319813 GTCTGTCCTG
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
46 25 0.43
47 1 0.02
48 2 0.03
50 30 0.52
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.36
Consensus pattern (49 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATCTAAT
Found at i:50323527 original size:39 final size:40
Alignment explanation
Indices: 50323362--50323566 Score: 342
Period size: 40 Copynumber: 5.2 Consensus size: 40
50323352 GGACTAAGAT
*
50323362 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
50323402 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
50323442 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* *
50323482 CCGAAGGCACTTGTGCGAGTTGCTATATCC-GGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* * *
50323521 CCGAAGGCATTTGTGCGAGTTGCTATATCC-GACTAAATC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
50323560 CCGAAGG
1 CCGAAGG
50323567 TACTTGGGTT
Statistics
Matches: 159, Mismatches: 6, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
39 52 0.33
40 107 0.67
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:50328136 original size:14 final size:14
Alignment explanation
Indices: 50328103--50328152 Score: 59
Period size: 13 Copynumber: 3.7 Consensus size: 14
50328093 TCCCTTTCTG
50328103 TTCTTTCT-TACTT
1 TTCTTTCTCTACTT
* *
50328116 CTCTTTCTCTATTT
1 TTCTTTCTCTACTT
50328130 TTCTTTC-CTACTT
1 TTCTTTCTCTACTT
*
50328143 TTCCTTCTCT
1 TTCTTTCTCT
50328153 GCTCCTTCTC
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
13 18 0.60
14 12 0.40
ACGTcount: A:0.06, C:0.30, G:0.00, T:0.64
Consensus pattern (14 bp):
TTCTTTCTCTACTT
Found at i:50329836 original size:6 final size:6
Alignment explanation
Indices: 50329812--50329875 Score: 53
Period size: 6 Copynumber: 11.2 Consensus size: 6
50329802 TTTGATTCCA
* * ** *
50329812 TTTATT TTTA-C TTTA-T TTTACT TTTCCT TTTGTT TTTATT TTTA-T
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
*
50329857 TTTATT TTTATT TCTATT T
1 TTTATT TTTATT TTTATT T
50329876 CCAATTTTCA
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
5 13 0.27
6 36 0.73
ACGTcount: A:0.14, C:0.08, G:0.02, T:0.77
Consensus pattern (6 bp):
TTTATT
Found at i:50329853 original size:17 final size:17
Alignment explanation
Indices: 50329812--50329869 Score: 55
Period size: 17 Copynumber: 3.4 Consensus size: 17
50329802 TTTGATTCCA
* *
50329812 TTTATTTTTACTTTA-T
1 TTTATTTTCATTTTATT
* *
50329828 TTTACTTTTCCTTTTGTT
1 TTTA-TTTTCATTTTATT
*
50329846 TTTATTTTTATTTTATT
1 TTTATTTTCATTTTATT
50329863 TTTATTT
1 TTTATTT
50329870 CTATTTCCAA
Statistics
Matches: 33, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
16 4 0.12
17 24 0.73
18 5 0.15
ACGTcount: A:0.14, C:0.07, G:0.02, T:0.78
Consensus pattern (17 bp):
TTTATTTTCATTTTATT
Found at i:50329867 original size:11 final size:11
Alignment explanation
Indices: 50329812--50329875 Score: 60
Period size: 11 Copynumber: 5.6 Consensus size: 11
50329802 TTTGATTCCA
*
50329812 TTTATTTTTAC
1 TTTATTTTTAT
50329823 TTTA-TTTTACT
1 TTTATTTTTA-T
*
50329834 TTTCCTTTTGT-T
1 TTT-ATTTT-TAT
50329846 TTTATTTTTAT
1 TTTATTTTTAT
50329857 TTTATTTTTAT
1 TTTATTTTTAT
50329868 TTCTATTT
1 TT-TATTT
50329876 CCAATTTTCA
Statistics
Matches: 44, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
10 6 0.14
11 25 0.57
12 9 0.20
13 3 0.07
14 1 0.02
ACGTcount: A:0.14, C:0.08, G:0.02, T:0.77
Consensus pattern (11 bp):
TTTATTTTTAT
Found at i:50329874 original size:17 final size:17
Alignment explanation
Indices: 50329839--50329875 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
50329829 TTACTTTTCC
* *
50329839 TTTTGTTTTTATTTTTA
1 TTTTATTTTTATTTCTA
50329856 TTTTATTTTTATTTCTA
1 TTTTATTTTTATTTCTA
50329873 TTT
1 TTT
50329876 CCAATTTTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.14, C:0.03, G:0.03, T:0.81
Consensus pattern (17 bp):
TTTTATTTTTATTTCTA
Found at i:50336811 original size:33 final size:33
Alignment explanation
Indices: 50336769--50336834 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
50336759 TTCGAGGCAA
50336769 TTGAAACCTTACGAAAGGAATTATCCGACTCAT
1 TTGAAACCTTACGAAAGGAATTATCCGACTCAT
50336802 TTGAAACCTTACGAAAGGAATTATCCGACTCAT
1 TTGAAACCTTACGAAAGGAATTATCCGACTCAT
50336835 GATTTGGAAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.27
Consensus pattern (33 bp):
TTGAAACCTTACGAAAGGAATTATCCGACTCAT
Found at i:50343895 original size:44 final size:44
Alignment explanation
Indices: 50343832--50343918 Score: 140
Period size: 44 Copynumber: 2.0 Consensus size: 44
50343822 CACGTTTGTA
*
50343832 ATCATTTTTAAGTAGGTAAGTTTGTA-AGTTGATTAAACTAGTTG
1 ATCATTTTTAAGTAGGTAAGTTCGTACA-TTGATTAAACTAGTTG
*
50343876 ATCATTTTTGAGTAGGTAAGTTCGTACATTGATTAAACTAGTT
1 ATCATTTTTAAGTAGGTAAGTTCGTACATTGATTAAACTAGTT
50343919 AATTGATGTT
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
44 39 0.98
45 1 0.03
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.43
Consensus pattern (44 bp):
ATCATTTTTAAGTAGGTAAGTTCGTACATTGATTAAACTAGTTG
Found at i:50345798 original size:48 final size:48
Alignment explanation
Indices: 50345727--50346057 Score: 294
Period size: 48 Copynumber: 6.9 Consensus size: 48
50345717 GACATTTGGG
* * * * *
50345727 TGATATGTGTGCCAATGTAAGACCATGTCTGGGATATGGCATCAGCCA
1 TGATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCCA
* * *
50345775 TGATATGAGAGCCAGTGTAAGACCATGTTTGGAAAATGGCAT-AGGCAA
1 TGATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCA-GCCA
* * * * * *
50345823 TG-TAATGAGAGCCAATGTAAGGCCATGTTTCGGACATGGTATTAG-TA
1 TGAT-ATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCCA
* * * * **
50345870 TTGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCA
1 -TGATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCCA
* * **
50345919 CGATATGAGAGCCAGTGTAAAACCATGTTTGGGACATGGCATCAGCTT
1 TGATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCCA
* * * *
50345967 TGAGATGAGAGCTAGTGTAAGACCATGTCTGGGATATGGCATC-GACC-
1 TGATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAG-CCA
* * * *
50346014 TCAACATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATC
1 T-GATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATC
50346058 GGCAATTCAC
Statistics
Matches: 227, Mismatches: 48, Indels: 16
0.78 0.16 0.05
Matches are distributed among these distances:
47 5 0.02
48 219 0.96
49 3 0.01
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (48 bp):
TGATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCCA
Found at i:50345987 original size:144 final size:144
Alignment explanation
Indices: 50345727--50345994 Score: 369
Period size: 144 Copynumber: 1.9 Consensus size: 144
50345717 GACATTTGGG
* * *
50345727 TGATATGTGTGCCAATGTAAGACCATGTCTGGGATATGGCATCAGCCATGATATGAGAGCCAGTG
1 TGATATGTGCGCCAATGTAAGACCATGTCTGGGACATGGCATCAGCCACGATATGAGAGCCAGTG
* *
50345792 TAAGACCATGTTTGGAAAATGGCATAGGCAATGTAATGAGAGCCAATGTAAGGCCATGTTTCGGA
66 TAAAACCATGTTTGGAAAATGGCATAGGCAATGTAATGAGAGCCAATGTAAGACCATGTTTCGGA
50345857 CATGGTATTAGTAT
131 CATGGTATTAGTAT
* * **
50345871 TGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCACGATATGAGAGCCAGTG
1 TGATATGTGCGCCAATGTAAGACCATGTCTGGGACATGGCATCAGCCACGATATGAGAGCCAGTG
* * ** * *
50345936 TAAAACCATGTTTGGGACATGGCATCA-GCTTTG-AGATGAGAGCTAGTGTAAGACCATGT
66 TAAAACCATGTTTGGAAAATGGCAT-AGGCAATGTA-ATGAGAGCCAATGTAAGACCATGT
50345995 CTGGGATATG
Statistics
Matches: 107, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
143 1 0.01
144 105 0.98
145 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (144 bp):
TGATATGTGCGCCAATGTAAGACCATGTCTGGGACATGGCATCAGCCACGATATGAGAGCCAGTG
TAAAACCATGTTTGGAAAATGGCATAGGCAATGTAATGAGAGCCAATGTAAGACCATGTTTCGGA
CATGGTATTAGTAT
Found at i:50346023 original size:144 final size:144
Alignment explanation
Indices: 50345731--50346057 Score: 356
Period size: 144 Copynumber: 2.3 Consensus size: 144
50345721 TTTGGGTGAT
* * * * *
50345731 ATGTGTGCCAATGTAAGACCATGTCTGGGATATGGCATCAGCCATGATATGAGAGCCAGTGTAAG
1 ATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGATATGAGAGCCAGTGTAAA
* *
50345796 ACCATGTTTGGAAAATGGCATAGGCAATGTAATGAGAGCCAATGTAAGGCCATGTTTCGGACATG
66 ACCATGTTTGGAAAATGGCATAGGCAATGTAATGAGAGCCAATGTAAGACCATGTCTCGGACATG
* ** *
50345861 GTATTAGTATTGAT
131 GCATTAGTATCAAC
* * **
50345875 ATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCACGATATGAGAGCCAGTGTAAA
1 ATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGATATGAGAGCCAGTGTAAA
* * ** * * * *
50345940 ACCATGTTTGGGACATGGCATCA-GCTTTG-AGATGAGAGCTAGTGTAAGACCATGTCTGGGATA
66 ACCATGTTTGGAAAATGGCAT-AGGCAATGTA-ATGAGAGCCAATGTAAGACCATGTCTCGGACA
*
50346003 TGGCA-TCG-ACCTCAAC
129 TGGCATTAGTA--TCAAC
* *
50346019 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATC
1 ATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
50346058 GGCAATTCAC
Statistics
Matches: 151, Mismatches: 28, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
142 1 0.01
143 3 0.02
144 146 0.97
145 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (144 bp):
ATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGATATGAGAGCCAGTGTAAA
ACCATGTTTGGAAAATGGCATAGGCAATGTAATGAGAGCCAATGTAAGACCATGTCTCGGACATG
GCATTAGTATCAAC
Found at i:50347628 original size:26 final size:26
Alignment explanation
Indices: 50347594--50347670 Score: 109
Period size: 26 Copynumber: 3.0 Consensus size: 26
50347584 GCCAACACAC
*
50347594 CAATATCGCAGTAAAGCTACCAGTAA
1 CAATATCGCAGTAGAGCTACCAGTAA
* *
50347620 TAATATCGCAGTAGAGCTACCAGTGA
1 CAATATCGCAGTAGAGCTACCAGTAA
* *
50347646 CAATAACGCAATAGAGCTACCAGTA
1 CAATATCGCAGTAGAGCTACCAGTA
50347671 TCAGTATATG
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.40, C:0.22, G:0.18, T:0.19
Consensus pattern (26 bp):
CAATATCGCAGTAGAGCTACCAGTAA
Found at i:50348302 original size:27 final size:27
Alignment explanation
Indices: 50348258--50348312 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
50348248 GGTTAAACGT
* * *
50348258 TTGGAATTAGGGTTAACACCTTCTTAC
1 TTGGAATTAAGGTCAACACCCTCTTAC
*
50348285 TTGGCATTAAGGTCAACACCCTCTTAC
1 TTGGAATTAAGGTCAACACCCTCTTAC
50348312 T
1 T
50348313 AATACTTAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.35
Consensus pattern (27 bp):
TTGGAATTAAGGTCAACACCCTCTTAC
Found at i:50355095 original size:26 final size:26
Alignment explanation
Indices: 50355043--50355114 Score: 81
Period size: 26 Copynumber: 2.8 Consensus size: 26
50355033 AATTTCGTAG
* * * * *
50355043 CAAAGCTGCTAGTAATAATATCGCAA
1 CAAAGCTGCCAGTAACAGTAACACAA
50355069 CAAAGCTGCCAGTAACAGTAACACAA
1 CAAAGCTGCCAGTAACAGTAACACAA
* *
50355095 CAGAGCTGCCAGTATCAGTA
1 CAAAGCTGCCAGTAACAGTA
50355115 TATGTGGCAA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.40, C:0.24, G:0.18, T:0.18
Consensus pattern (26 bp):
CAAAGCTGCCAGTAACAGTAACACAA
Found at i:50378922 original size:27 final size:27
Alignment explanation
Indices: 50378864--50379012 Score: 151
Period size: 27 Copynumber: 5.5 Consensus size: 27
50378854 AAATTGTACA
* *
50378864 GCACTAAGTGTGC-ATTTGACTATGTT
1 GCACTAAGTGTGCGAATTGACTATGAT
* *
50378890 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGAATTGACTATGAT
* **
50378917 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGAT
*
50378944 GCACTAAGTGTGCGAGATGGACTATG-T
1 GCACTAAGTGTGCGA-ATTGACTATGAT
* *
50378971 GGCACTAAGTGTGCGATTTGATTAT-AT
1 -GCACTAAGTGTGCGAATTGACTATGAT
*
50378998 AGCACTGAGTGTGCG
1 -GCACTAAGTGTGCG
50379013 GGCTCAATAA
Statistics
Matches: 102, Mismatches: 17, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
26 13 0.13
27 66 0.65
28 23 0.23
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGAT
Found at i:50378976 original size:82 final size:80
Alignment explanation
Indices: 50378864--50379012 Score: 201
Period size: 82 Copynumber: 1.8 Consensus size: 80
50378854 AAATTGTACA
* * *
50378864 GCACTAAGTGTGCATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGT
1 GCACTAAGTGTGCAATGGACTATGTGGCACTAAGTGTGCGAAATGAATAT-ATAGCACTAAGTGT
50378928 GCGAATTGACCATGCG
65 GCGAATTGACCATGCG
** * *
50378944 GCACTAAGTGTGCGAGATGGACTATGTGGCACTAAGTGTGCGATTTGATTATATAGCACTGAGTG
1 GCACTAAGTGTGC-A-ATGGACTATGTGGCACTAAGTGTGCGAAATGAATATATAGCACTAAGTG
50379009 TGCG
64 TGCG
50379013 GGCTCAATAA
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
80 13 0.22
81 3 0.05
82 43 0.73
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (80 bp):
GCACTAAGTGTGCAATGGACTATGTGGCACTAAGTGTGCGAAATGAATATATAGCACTAAGTGTG
CGAATTGACCATGCG
Found at i:50379003 original size:55 final size:54
Alignment explanation
Indices: 50378864--50379012 Score: 176
Period size: 55 Copynumber: 2.8 Consensus size: 54
50378854 AAATTGTACA
*
50378864 GCACTAAGTGTGC-ATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGAT
* * ** * *
50378917 GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGATGGACTATG-T
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAAT-GAATATGAT
* * *
50378971 GGCACTAAGTGTGCGATTTGATTATATAGCACTGAGTGTGCG
1 -GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCG
50379013 GGCTCAATAA
Statistics
Matches: 80, Mismatches: 13, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
53 13 0.16
54 27 0.34
55 40 0.50
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGAT
Found at i:50382385 original size:40 final size:40
Alignment explanation
Indices: 50382155--50382386 Score: 288
Period size: 40 Copynumber: 5.8 Consensus size: 40
50382145 CATTTGAATG
* * * *
50382155 ATATCCGGGCTAAGTCTCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
* * * * *
50382195 TTATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
*
50382235 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
50382275 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* *
50382315 ATATCCGAGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
** * *
50382355 ATCCCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
50382387 TTGTGGTTAT
Statistics
Matches: 173, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
40 170 0.98
41 3 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
Found at i:50385564 original size:40 final size:40
Alignment explanation
Indices: 50385487--50385704 Score: 316
Period size: 40 Copynumber: 5.5 Consensus size: 40
50385477 AAACCAAGTA
* * *
50385487 CCTTCGGGATTTAG-CCGGATATAGCT-ACTTGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
50385526 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
50385566 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
50385606 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* ** *
50385646 CCTCCGGGACTTAGCCCGGA-ATTAGTTGCTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
50385686 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
50385705 TTACCATCCG
Statistics
Matches: 164, Mismatches: 12, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
39 15 0.09
40 149 0.91
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:50393585 original size:40 final size:40
Alignment explanation
Indices: 50393508--50393724 Score: 307
Period size: 40 Copynumber: 5.5 Consensus size: 40
50393498 AAACCAAGTA
* * *
50393508 CCTTCGGGATTTAG-CCGGATATAGCT-ACTTGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
50393547 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
50393587 CGTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
50393627 -CTTCGAGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
** *
50393666 CCTTCGGGACTTAGCCCGGA-ATTAGTCGCTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
50393706 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
50393725 TTACCATCCG
Statistics
Matches: 162, Mismatches: 12, Indels: 7
0.90 0.07 0.04
Matches are distributed among these distances:
39 52 0.32
40 110 0.68
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:50393641 original size:79 final size:79
Alignment explanation
Indices: 50393508--50393724 Score: 305
Period size: 79 Copynumber: 2.7 Consensus size: 79
50393498 AAACCAAGTA
* * *
50393508 CCTTCGGGATTTAG-CCGGATATAGCTACTTGCTCAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAG-TACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
50393572 TAACTCACACAAATG
65 TAACTCACACAAATG
* * *
50393587 CGTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG-CTTCGAGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
50393651 TAACTCGCACAAATG
65 TAACTCACACAAATG
*
50393666 CCTTCGGGACTTAGCCCGGA-ATTAGTCGCTAGCACAAATGCCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGGATA-TAGT-ACTAGCACAAATGCCTTCGGGACTTAGCCCGG
50393725 TTACCATCCG
Statistics
Matches: 123, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
78 1 0.01
79 84 0.68
80 38 0.31
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.24
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
AACTCACACAAATG
Found at i:50404663 original size:40 final size:40
Alignment explanation
Indices: 50404594--50404761 Score: 205
Period size: 40 Copynumber: 4.2 Consensus size: 40
50404584 CGGATGATAA
* * * *
50404594 CCGGACTAAGATCCGAAGGCATTCGTGCTAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* * * * * * *
50404634 CCAGGCTATGTCCTGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATAT
50404674 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
50404714 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
50404754 CC-GGCTAA
1 CCGGGCTAA
50404762 ATCCTGAAGA
Statistics
Matches: 109, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
39 8 0.07
40 99 0.91
41 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:50405038 original size:22 final size:22
Alignment explanation
Indices: 50404998--50405039 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
50404988 GAATGTGCAT
*
50404998 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
50405020 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
50405040 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:50407316 original size:25 final size:25
Alignment explanation
Indices: 50407288--50407357 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
50407278 CCTCTTTAAT
* * *
50407288 AACTAGGGTAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
50407313 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
50407338 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
50407358 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:50407593 original size:27 final size:27
Alignment explanation
Indices: 50407563--50407723 Score: 187
Period size: 27 Copynumber: 6.0 Consensus size: 27
50407553 GGGCAAAATT
* * *
50407563 GTAATTTTACCCCACAAGGGTATCTCG
1 GTAATTCTACCCTACAAGGGTATTTCG
* * **
50407590 GTAATTCTACCCTATAGGGGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCG
50407617 GTAATTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCG
* * **
50407644 GTAATTCTACCCTATAGGGGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCG
* *
50407671 GTAATTCTACCCTATAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCG
* *
50407698 GTAATTCTACCATACAGGGGTATTTC
1 GTAATTCTACCCTACAAGGGTATTTC
50407724 AATAATTTTG
Statistics
Matches: 115, Mismatches: 19, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 115 1.00
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCG
Found at i:50407729 original size:27 final size:27
Alignment explanation
Indices: 50407580--50407730 Score: 203
Period size: 27 Copynumber: 5.6 Consensus size: 27
50407570 TACCCCACAA
* *
50407580 GGGTATCTCGGTAATTCTACCCTATAG
1 GGGTATTTCAGTAATTCTACCCTATAG
* * *
50407607 GGGTATTTTAGTAATTCTACCCTACAA
1 GGGTATTTCAGTAATTCTACCCTATAG
*
50407634 GGGTATTTCGGTAATTCTACCCTATAG
1 GGGTATTTCAGTAATTCTACCCTATAG
*
50407661 GGGTATTTTAGTAATTCTACCCTATAG
1 GGGTATTTCAGTAATTCTACCCTATAG
* * *
50407688 GGGTATTTCGGTAATTCTACCATACAG
1 GGGTATTTCAGTAATTCTACCCTATAG
*
50407715 GGGTATTTCAATAATT
1 GGGTATTTCAGTAATT
50407731 TTGTAAATCG
Statistics
Matches: 107, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 107 1.00
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37
Consensus pattern (27 bp):
GGGTATTTCAGTAATTCTACCCTATAG
Found at i:50407730 original size:54 final size:54
Alignment explanation
Indices: 50407563--50407722 Score: 257
Period size: 54 Copynumber: 3.0 Consensus size: 54
50407553 GGGCAAAATT
* * *
50407563 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTATAGGGGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTTA
50407617 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTTA
* * * *
50407671 GTAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCATACAGGGGTATTT
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTT
50407723 CAATAATTTT
Statistics
Matches: 99, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 99 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (54 bp):
GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTTA
Found at i:50407756 original size:81 final size:81
Alignment explanation
Indices: 50407589--50407760 Score: 184
Period size: 81 Copynumber: 2.1 Consensus size: 81
50407579 AGGGTATCTC
* * **
50407589 GGTAATTCTACCCTATAGGGGTATTTTAGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTAC
1 GGTAATTCTACCCTATAGGGGTATTTCAGTAATTCTACCATACAAGGGTATTTCAATAATTCTAC
** ***
50407654 CCTATAGGGGTATTTT
66 CAAATAGGGGTAAAAT
* * * **
50407670 AGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCATACAGGGGTATTTCAATAATT-TTG
1 GGTAATTCTACCCTATAGGGGTATTTCAGTAATTCTACCATACAAGGGTATTTCAATAATTCTAC
* *
50407734 TAAATCGAGGGTAAAAT
66 CAAATAG-GGGTAAAAT
50407751 GGTAATTCTA
1 GGTAATTCTA
50407761 AAAATCGGGG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
80 4 0.05
81 69 0.95
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.37
Consensus pattern (81 bp):
GGTAATTCTACCCTATAGGGGTATTTCAGTAATTCTACCATACAAGGGTATTTCAATAATTCTAC
CAAATAGGGGTAAAAT
Found at i:50407827 original size:108 final size:107
Alignment explanation
Indices: 50407715--50408029 Score: 284
Period size: 108 Copynumber: 2.9 Consensus size: 107
50407705 TACCATACAG
* * *
50407715 GGGTATTTCAATAATTTTGTAAA-TCGAGGGTAAAATGGTAA-TTCTAAAAATCGGGGGTACTTT
1 GGGTATTTCAATAATTTTGCAAACT-GAGGGTAAAATAGTAATTTC-AAAAATCAGGGGTACTTT
**
50407778 GGTAATTTTTACAAGTC-GAGGGTATTTTAGTAATTTTAAAATCGA
64 GGTAA-TTTTACAAACCAGA-GGTATTTTAGTAATTTTAAAATCGA
* *** * *
50407823 GGGTATTTCAGTAATTTTGCAAACTGAGGGTATTTTAGTAATTTCACAAATCAGGGGTATTTTGG
1 GGGTATTTCAATAATTTTGCAAACTGAGGGTAAAATAGTAATTTCAAAAATCAGGGGTACTTTGG
*
50407888 TAATTTTACAAACCAGAGGTATTTTAGTAATTTTATAAA-CCA
66 TAATTTTACAAACCAGAGGTATTTTAGTAATTTTA-AAATCGA
*** * * ** *
50407930 CGGGTATTTTGGTAATTTTAC-AAGTCGAGGGT-ATTTCAGTAATTTCACAAATCAGGGGTA-TT
1 -GGGTATTTCAATAATTTTGCAAACT-GAGGGTAAAAT-AGTAATTTCAAAAATCAGGGGTACTT
* * * * *
50407992 TTGTAATTTCACAAACTAGGGGTATTTTGGTAATTTTA
63 TGGTAATTTTACAAACCAGAGGTATTTTAGTAATTTTA
50408030 CAAACCAGGG
Statistics
Matches: 178, Mismatches: 22, Indels: 15
0.83 0.10 0.07
Matches are distributed among these distances:
107 70 0.39
108 104 0.58
109 4 0.02
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.38
Consensus pattern (107 bp):
GGGTATTTCAATAATTTTGCAAACTGAGGGTAAAATAGTAATTTCAAAAATCAGGGGTACTTTGG
TAATTTTACAAACCAGAGGTATTTTAGTAATTTTAAAATCGA
Found at i:50408019 original size:161 final size:160
Alignment explanation
Indices: 50407769--50408107 Score: 470
Period size: 161 Copynumber: 2.1 Consensus size: 160
50407759 TAAAAATCGG
* * *
50407769 GGGTACTTTGGTAATTTTTACAAGTCGAGGGTATTTTAGTAATTTTAAAATCGAGGGTATTTCAG
1 GGGTATTTTGGTAA-TTTTACAAGTCGAGGGTATTTCAGTAATTTCAAAATCGAGGGTATTTCAG
** *
50407834 TAATTTTGCAAACTGAGGGTATTTTAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAA
65 TAATTTCACAAACTGAGGGTATTTTAGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAA
*
50407899 ACCAGAGGTATTTTAG-TAATTTTATAAACCA
130 ACCAGAGGTATTTT-GTTAATTTTACAAACCA
50407930 CGGGTATTTTGGTAATTTTACAAGTCGAGGGTATTTCAGTAATTTCACAAATC-AGGGGTATTT-
1 -GGGTATTTTGGTAATTTTACAAGTCGAGGGTATTTCAGTAATTTCA-AAATCGA-GGGTATTTC
* * *
50407993 TGTAATTTCACAAACT-AGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTA
63 AGTAATTTCACAAACTGA-GGGTATTTTAGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTA
* * *
50408057 CAAACCAGTGGTATTTTGTTAATTTTACGAACTA
127 CAAACCAGAGGTATTTTGTTAATTTTACAAACCA
50408091 GAGGTATTTTGGTAATT
1 G-GGTATTTTGGTAATT
50408108 CTACCCTATA
Statistics
Matches: 159, Mismatches: 13, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
160 3 0.02
161 130 0.82
162 26 0.16
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.40
Consensus pattern (160 bp):
GGGTATTTTGGTAATTTTACAAGTCGAGGGTATTTCAGTAATTTCAAAATCGAGGGTATTTCAGT
AATTTCACAAACTGAGGGTATTTTAGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAA
CCAGAGGTATTTTGTTAATTTTACAAACCA
Found at i:50408084 original size:27 final size:27
Alignment explanation
Indices: 50407750--50408107 Score: 332
Period size: 27 Copynumber: 13.3 Consensus size: 27
50407740 GAGGGTAAAA
* * * * *
50407750 TGGTAATTCTAAAAATCGGGGGTACTT
1 TGGTAATTTTACAAACCAGGGGTATTT
**
50407777 TGGTAATTTTTACAAGTC-GAGGGTATTT
1 TGGTAA-TTTTACAAACCAG-GGGTATTT
* *
50407805 TAGTAATTTTA-AAATC-GAGGGTATTT
1 TGGTAATTTTACAAACCAG-GGGTATTT
** * *
50407831 CAGTAATTTTGCAAA-CTGAGGGTATTT
1 TGGTAATTTTACAAACCAG-GGGTATTT
* * *
50407858 TAGTAATTTCACAAATCAGGGGTATTT
1 TGGTAATTTTACAAACCAGGGGTATTT
*
50407885 TGGTAATTTTACAAACCAGAGGTATTT
1 TGGTAATTTTACAAACCAGGGGTATTT
* * *
50407912 TAGTAATTTTATAAACCACGGGTATTT
1 TGGTAATTTTACAAACCAGGGGTATTT
**
50407939 TGGTAATTTTACAAGTC-GAGGGTATTT
1 TGGTAATTTTACAAACCAG-GGGTATTT
** * *
50407966 CAGTAATTTCACAAATCAGGGGTATTT
1 TGGTAATTTTACAAACCAGGGGTATTT
* *
50407993 T-GTAATTTCACAAACTAGGGGTATTT
1 TGGTAATTTTACAAACCAGGGGTATTT
50408019 TGGTAATTTTACAAACCAGGGGTATTT
1 TGGTAATTTTACAAACCAGGGGTATTT
*
50408046 TGGTAATTTTACAAACCAGTGGTATTT
1 TGGTAATTTTACAAACCAGGGGTATTT
* * * *
50408073 TGTTAATTTTACGAACTAGAGGTATTT
1 TGGTAATTTTACAAACCAGGGGTATTT
50408100 TGGTAATT
1 TGGTAATT
50408108 CTACCCTATA
Statistics
Matches: 283, Mismatches: 40, Indels: 16
0.83 0.12 0.05
Matches are distributed among these distances:
26 48 0.17
27 212 0.75
28 23 0.08
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (27 bp):
TGGTAATTTTACAAACCAGGGGTATTT
Found at i:50408178 original size:27 final size:26
Alignment explanation
Indices: 50408146--50408230 Score: 116
Period size: 27 Copynumber: 3.2 Consensus size: 26
50408136 CACAATAAAA
*
50408146 GGTAAAACGATAATTTTGTAAATCGAG
1 GGTAAAAC-ATAATTCTGTAAATCGAG
*
50408173 GGTAAAACAATAATTCTGTAAATCAAG
1 GGTAAAAC-ATAATTCTGTAAATCGAG
*
50408200 GGTAAAACAGTAATTCTATAAATCGAG
1 GGTAAAACA-TAATTCTGTAAATCGAG
50408227 GGTA
1 GGTA
50408231 CTTTGGTAAT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
26 1 0.02
27 51 0.98
ACGTcount: A:0.44, C:0.09, G:0.20, T:0.27
Consensus pattern (26 bp):
GGTAAAACATAATTCTGTAAATCGAG
Found at i:50413635 original size:24 final size:24
Alignment explanation
Indices: 50413608--50413654 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
50413598 TTATAATATG
* * *
50413608 AAAATGACTATTTTGCCCCTAGGT
1 AAAATGACCATTATACCCCTAGGT
50413632 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
50413655 GTTTAATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (24 bp):
AAAATGACCATTATACCCCTAGGT
Found at i:50413822 original size:24 final size:25
Alignment explanation
Indices: 50413766--50413836 Score: 76
Period size: 24 Copynumber: 2.8 Consensus size: 25
50413756 GGAAGTGCAT
50413766 AAAGGGCTTTTGCCCCAGTT-TGTCA
1 AAAGGGC-TTTGCCCCAGTTATGTCA
50413791 AAAGGGCTTTGCCCCAGTTAT-T-A
1 AAAGGGCTTTGCCCCAGTTATGTCA
**
50413814 AAAGAGGCTAGGCCTCCAGTTAT
1 AAAG-GGCTTTGCC-CCAGTTAT
50413837 ATGAGAAAGT
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
23 5 0.12
24 20 0.49
25 16 0.39
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.28
Consensus pattern (25 bp):
AAAGGGCTTTGCCCCAGTTATGTCA
Found at i:50414065 original size:30 final size:31
Alignment explanation
Indices: 50414031--50414093 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 31
50414021 GTTTACAGTG
*
50414031 AAGGCTTCGGCCTAGTAATA-GAAATATGAA
1 AAGGCTTCGGCCCAGTAATATGAAATATGAA
* **
50414061 AAGGCTTTGGCCCAGTGTTATGAAATATGAA
1 AAGGCTTCGGCCCAGTAATATGAAATATGAA
50414092 AA
1 AA
50414094 ATGAAAAGGC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
30 16 0.57
31 12 0.43
ACGTcount: A:0.38, C:0.13, G:0.24, T:0.25
Consensus pattern (31 bp):
AAGGCTTCGGCCCAGTAATATGAAATATGAA
Found at i:50418061 original size:43 final size:43
Alignment explanation
Indices: 50418014--50418102 Score: 178
Period size: 43 Copynumber: 2.1 Consensus size: 43
50418004 AACAACGGAG
50418014 TAAGCTTTCATAAGCTTAGTAAGTCTTAAGCAATGCAAACAAA
1 TAAGCTTTCATAAGCTTAGTAAGTCTTAAGCAATGCAAACAAA
50418057 TAAGCTTTCATAAGCTTAGTAAGTCTTAAGCAATGCAAACAAA
1 TAAGCTTTCATAAGCTTAGTAAGTCTTAAGCAATGCAAACAAA
50418100 TAA
1 TAA
50418103 ACGCAATTAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.43, C:0.16, G:0.13, T:0.28
Consensus pattern (43 bp):
TAAGCTTTCATAAGCTTAGTAAGTCTTAAGCAATGCAAACAAA
Found at i:50418966 original size:43 final size:43
Alignment explanation
Indices: 50418918--50419266 Score: 599
Period size: 43 Copynumber: 8.1 Consensus size: 43
50418908 CCGGCATTAC
50418918 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
50418961 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
50419004 GCCTGCTAGGCACGAAGGCCTGAATACACATCACCAGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
50419047 GCCTGCTAGGCACGAAGGCCCGAATATATATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
50419090 GCCTGCTAGGCACGAAGGCCCGAATATATATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
50419133 GCCTGCTAGGCACGAAGGCCCGAATATACATCACTGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
50419176 GCCTGCTAGGCATGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
50419219 GCCAGCTAGGCACGAAGGCCCGAATATACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
50419262 GCCTG
1 GCCTG
50419267 TGAGATTTAA
Statistics
Matches: 291, Mismatches: 15, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 291 1.00
ACGTcount: A:0.30, C:0.32, G:0.26, T:0.12
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:50423805 original size:93 final size:93
Alignment explanation
Indices: 50423690--50423861 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
50423680 CGCCCATAAG
* *
50423690 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAACTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAACTGAACTCGGACTCAACTCA
50423755 ACGAGTTCGGATGCCTAGTTACATTTCA
66 ACGAGTTCGGATGCCTAGTTACATTTCA
* *
50423783 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAACTGAACTCGGACTCAACTCA
50423848 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
50423862 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAACTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATTTCA
Found at i:50423858 original size:46 final size:46
Alignment explanation
Indices: 50423683--50423858 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
50423673 TGTAACCCGC
* * *
50423683 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
50423729 CCATAA-CTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGC-GAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
50423779 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
50423822 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
50423859 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 10, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 3 0.03
46 62 0.56
47 29 0.26
48 3 0.03
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Done.