Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 155 of 255
Found at i:50425492 original size:21 final size:20
Alignment explanation
Indices: 50425470--50425537 Score: 68
Period size: 21 Copynumber: 3.4 Consensus size: 20
50425460 GTTGAGAAGG
*
50425470 AAGTTGCTACTGCAGAAGAGG
1 AAGTTGCT-CTGCAGAAGAGA
50425491 AAGTT-CT-TGCAGAAGAGA
1 AAGTTGCTCTGCAGAAGAGA
* * *
50425509 AAGTTGTTGCTGAAGAAGAAA
1 AAGTTGCT-CTGCAGAAGAGA
50425530 AAGTTGCT
1 AAGTTGCT
50425538 GAAAATGAGA
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
18 15 0.38
19 1 0.03
20 2 0.05
21 21 0.54
ACGTcount: A:0.37, C:0.10, G:0.29, T:0.24
Consensus pattern (20 bp):
AAGTTGCTCTGCAGAAGAGA
Found at i:50425503 original size:18 final size:18
Alignment explanation
Indices: 50425480--50425529 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
50425470 AAGTTGCTAC
*
50425480 TGCAGAAGAGGAAGTTCT
1 TGCAGAAGAGAAAGTTCT
*
50425498 TGCAGAAGAGAAAGTTGT
1 TGCAGAAGAGAAAGTTCT
*
50425516 TGCTGAAGAAGAAA
1 TGCAGAAG-AGAAA
50425530 AAGTTGCTGA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
18 23 0.82
19 5 0.18
ACGTcount: A:0.40, C:0.08, G:0.32, T:0.20
Consensus pattern (18 bp):
TGCAGAAGAGAAAGTTCT
Found at i:50426069 original size:16 final size:16
Alignment explanation
Indices: 50426048--50426102 Score: 67
Period size: 16 Copynumber: 3.4 Consensus size: 16
50426038 GTTTGGTTCA
50426048 CTGTAATAGAATATG-G
1 CTGTAATAGAATA-GAG
**
50426064 CTGTAATTCAATAGAG
1 CTGTAATAGAATAGAG
*
50426080 CTGTAATGGAATAGAG
1 CTGTAATAGAATAGAG
50426096 CTGTAAT
1 CTGTAAT
50426103 CAGTAATTCA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
15 1 0.03
16 33 0.97
ACGTcount: A:0.36, C:0.09, G:0.24, T:0.31
Consensus pattern (16 bp):
CTGTAATAGAATAGAG
Found at i:50426170 original size:44 final size:46
Alignment explanation
Indices: 50426084--50426177 Score: 149
Period size: 44 Copynumber: 2.1 Consensus size: 46
50426074 ATAGAGCTGT
50426084 AATGGAATAGAGCTGTAATCAGTAATTCAATTGTTTGGTTGAATGG
1 AATGGAATAGAGCTGTAATCAGTAATTCAATTGTTTGGTTGAATGG
*
50426130 AATGGAATAGAGCTGTAAT-AG-AATTC-TTGTGTTTGGTTGAATGG
1 AATGGAATAGAGCTGTAATCAGTAATTCAAT-TGTTTGGTTGAATGG
50426174 AATG
1 AATG
50426178 ATGTTGTAAT
Statistics
Matches: 46, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
43 1 0.02
44 24 0.52
45 2 0.04
46 19 0.41
ACGTcount: A:0.32, C:0.05, G:0.28, T:0.35
Consensus pattern (46 bp):
AATGGAATAGAGCTGTAATCAGTAATTCAATTGTTTGGTTGAATGG
Found at i:50426388 original size:12 final size:12
Alignment explanation
Indices: 50426373--50426403 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
50426363 AATATATATT
*
50426373 TTAATAACATTA
1 TTAATAACAGTA
50426385 TTAATAACAGTA
1 TTAATAACAGTA
50426397 TTAATAA
1 TTAATAA
50426404 TATTTAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.52, C:0.06, G:0.03, T:0.39
Consensus pattern (12 bp):
TTAATAACAGTA
Found at i:50426416 original size:13 final size:13
Alignment explanation
Indices: 50426398--50426447 Score: 50
Period size: 13 Copynumber: 3.8 Consensus size: 13
50426388 ATAACAGTAT
50426398 TAATAATATTTAA
1 TAATAATATTTAA
50426411 TAATAAT-TTTAA
1 TAATAATATTTAA
*
50426423 T-ATAAAATTATAA
1 TAATAATATT-TAA
*
50426436 TTAAGAATATTT
1 -TAATAATATTT
50426448 CAATGCCTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
11 4 0.13
12 8 0.27
13 10 0.33
14 2 0.07
15 6 0.20
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (13 bp):
TAATAATATTTAA
Found at i:50433750 original size:47 final size:47
Alignment explanation
Indices: 50433679--50434083 Score: 675
Period size: 47 Copynumber: 8.6 Consensus size: 47
50433669 CCCTTCGGGA
* * * * * *
50433679 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
50433726 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50433773 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50433820 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50433867 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
50433914 CTTATCACATATATATACACTTTCACATTCATCACATTGGTCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50433963 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50434010 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50434057 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
50434084 TATTCAAATA
Statistics
Matches: 340, Mismatches: 16, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
47 296 0.87
49 44 0.13
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:50433757 original size:25 final size:25
Alignment explanation
Indices: 50433729--50433807 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
50433719 ACTCGGCCCT
50433729 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * * *
50433754 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACTTTC-ACATTC
50433776 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
50433801 ATCACAT
1 ATCACAT
50433808 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:50434000 original size:190 final size:188
Alignment explanation
Indices: 50433679--50434083 Score: 711
Period size: 190 Copynumber: 2.1 Consensus size: 188
50433669 CCCTTCGGGA
* * * * *
50433679 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCCTATCACATATATACAC
50433744 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
50433809 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
131 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50433867 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCCTATCAC--ATATATAC
*
50433932 ACTTTCACATTCATCACATTGGTCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
50433997 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
129 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50434057 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
50434084 TATTCAAATA
Statistics
Matches: 206, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
188 48 0.23
190 158 0.77
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (188 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:50438161 original size:40 final size:40
Alignment explanation
Indices: 50438091--50438603 Score: 701
Period size: 40 Copynumber: 13.0 Consensus size: 40
50438081 ATTTTGTCCA
*** * *
50438091 AGCACGAATGC-CTTCGGGGTTTAGCACGGATATATCACT
1 AGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACT
* *
50438130 AGCACGGATGCTCTTCGGAACTTAGTCCGGATACATCACT
1 AGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACT
50438170 AGCACGAAT-CTCTTC-GAGACTTAGCCCGGATACATCACT
1 AGCACGAATGCTCTTCGGA-ACTTAGCCCGGATACATCACT
*
50438209 AGCACGAATAC-CTTC-GAGAC-TA--CCGGATACATCACT
1 AGCACGAATGCTCTTCGGA-ACTTAGCCCGGATACATCACT
50438245 AGCACGAATGCTCTTCAGG-ACTTAGCCCGGATACATCACT
1 AGCACGAATGCTCTTC-GGAACTTAGCCCGGATACATCACT
*
50438285 AGCACGAATGCTCTTC-GAGACTTGGCCCGGATACATCACT
1 AGCACGAATGCTCTTCGGA-ACTTAGCCCGGATACATCACT
* *
50438325 AGCACGAATGCTCTTTGGGACTTAGCCCGGATACATCACT
1 AGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACT
*
50438365 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
1 AGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACT
* *
50438405 AGCACGAATGCTCTTC-GAGACTTGGCCTGGATACATCACT
1 AGCACGAATGCTCTTCGGA-ACTTAGCCCGGATACATCACT
* *
50438445 AGCACGAATGCTTTTC-GAGACTTGGCCCGGATACATCACT
1 AGCACGAATGCTCTTCGGA-ACTTAGCCCGGATACATCACT
*
50438485 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
1 AGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACT
*
50438525 AGCACGAATGCTCTTCGG-ACTTAGCCCGGATGCATCACT
1 AGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACT
* *
50438564 AGCACAAATGCTCTTCGGGACTTAGCCCGGATACATCACT
1 AGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACT
50438604 CTCAATTCTC
Statistics
Matches: 433, Mismatches: 26, Indels: 29
0.89 0.05 0.06
Matches are distributed among these distances:
36 24 0.06
37 6 0.01
38 7 0.02
39 93 0.21
40 301 0.70
41 2 0.00
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
AGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACT
Found at i:50438346 original size:80 final size:80
Alignment explanation
Indices: 50438091--50438603 Score: 790
Period size: 80 Copynumber: 6.5 Consensus size: 80
50438081 ATTTTGTCCA
** * * *
50438091 AGCACGAATGC-CTTCGGGGTTTAGCACGGATATATCACTAGCACGGATGCTCTTCG-GAACTTA
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGAG-ACTTA
*
50438154 GTCCGGATACATCACT
65 GCCCGGATACATCACT
* *
50438170 AGCACGAAT-CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATAC-CTTCGAGAC-TA-
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGAGACTTAG
50438231 -CCGGATACATCACT
66 CCCGGATACATCACT
* *
50438245 AGCACGAATGCTCTTCAGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGAGACTTGG
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGAGACTTAG
50438310 CCCGGATACATCACT
66 CCCGGATACATCACT
* *
50438325 AGCACGAATGCTCTTTGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAG
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGAGACTTAG
50438390 CCCGGATACATCACT
66 CCCGGATACATCACT
* * * * *
50438405 AGCACGAATGCTCTTCGAGACTTGGCCTGGATACATCACTAGCACGAATGCTTTTCGAGACTTGG
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGAGACTTAG
50438470 CCCGGATACATCACT
66 CCCGGATACATCACT
50438485 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCG-GACTTAG
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGAGACTTAG
*
50438549 CCCGGATGCATCACT
66 CCCGGATACATCACT
*
50438564 AGCACAAATGCTCTTCGGGACTTAGCCCGGATACATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
50438604 CTCAATTCTC
Statistics
Matches: 398, Mismatches: 29, Indels: 14
0.90 0.07 0.03
Matches are distributed among these distances:
75 23 0.06
76 38 0.10
77 11 0.03
78 9 0.02
79 101 0.25
80 216 0.54
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (80 bp):
AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGAGACTTAG
CCCGGATACATCACT
Found at i:50438389 original size:120 final size:120
Alignment explanation
Indices: 50438091--50438603 Score: 806
Period size: 120 Copynumber: 4.3 Consensus size: 120
50438081 ATTTTGTCCA
** * * * *
50438091 AGCACGAATGC-CTTCGGGGTTTAGCACGGATATATCACTAGCACGGATGCTCTTCGGAACTTAG
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAG
*
50438155 TCCGGATACATCACTAGCACGAAT-CTCTTCGAGACTTAGCCCGGATACATCACT
66 CCCGGATACATCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATCACT
* * *
50438209 AGCACGAATAC-CTTCGAGAC-TA--CCGGATACATCACTAGCACGAATGCTCTTCAGGACTTAG
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAG
*
50438270 CCCGGATACATCACTAGCACGAATGCTCTTCGAGACTTGGCCCGGATACATCACT
66 CCCGGATACATCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATCACT
*
50438325 AGCACGAATGCTCTTTGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAG
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAG
* *
50438390 CCCGGATACATCACTAGCACGAATGCTCTTCGAGACTTGGCCTGGATACATCACT
66 CCCGGATACATCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATCACT
* * *
50438445 AGCACGAATGCTTTTCGAGACTTGGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAG
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAG
*
50438510 CCCGGATACATCACTAGCACGAATGCTCTTCG-GACTTAGCCCGGATGCATCACT
66 CCCGGATACATCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATCACT
*
50438564 AGCACAAATGCTCTTCGGGACTTAGCCCGGATACATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
50438604 CTCAATTCTC
Statistics
Matches: 363, Mismatches: 27, Indels: 9
0.91 0.07 0.02
Matches are distributed among these distances:
115 57 0.16
116 39 0.11
117 9 0.02
118 18 0.05
119 55 0.15
120 185 0.51
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (120 bp):
AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAG
CCCGGATACATCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATCACT
Found at i:50438557 original size:22 final size:22
Alignment explanation
Indices: 50438492--50438557 Score: 52
Period size: 22 Copynumber: 3.2 Consensus size: 22
50438482 ACTAGCACGA
50438492 ATGCTCTTCGGGACTTAGCCCGG
1 ATGCTCTTC-GGACTTAGCCCGG
* * * *
50438515 AT--ACATC--AC-TAGCACGA
1 ATGCTCTTCGGACTTAGCCCGG
50438532 ATGCTCTTCGGACTTAGCCCGG
1 ATGCTCTTCGGACTTAGCCCGG
50438554 ATGC
1 ATGC
50438558 ATCACTAGCA
Statistics
Matches: 30, Mismatches: 8, Indels: 11
0.61 0.16 0.22
Matches are distributed among these distances:
17 8 0.27
18 2 0.07
19 3 0.10
21 5 0.17
22 10 0.33
23 2 0.07
ACGTcount: A:0.21, C:0.30, G:0.24, T:0.24
Consensus pattern (22 bp):
ATGCTCTTCGGACTTAGCCCGG
Found at i:50440090 original size:47 final size:47
Alignment explanation
Indices: 50440019--50440233 Score: 340
Period size: 47 Copynumber: 4.6 Consensus size: 47
50440009 CCCTTCGGGA
* * * * * *
50440019 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
50440066 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50440113 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50440160 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50440207 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
50440234 TATTCAAATA
Statistics
Matches: 159, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 159 1.00
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:50440097 original size:25 final size:25
Alignment explanation
Indices: 50440069--50440147 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
50440059 ACTCGGCCCT
50440069 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * * *
50440094 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACTTTC-ACATTC
50440116 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
50440141 ATCACAT
1 ATCACAT
50440148 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:50447499 original size:23 final size:23
Alignment explanation
Indices: 50447473--50447522 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
50447463 ACCCTATGCA
50447473 ATGCAACATA-ATATCATACATGG-
1 ATGCAACATACATAT-A-ACATGGC
50447496 ATGCAACATACATATAACATGGC
1 ATGCAACATACATATAACATGGC
50447519 ATGC
1 ATGC
50447523 TCAAATACAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.24
23 15 0.60
24 4 0.16
ACGTcount: A:0.42, C:0.20, G:0.14, T:0.24
Consensus pattern (23 bp):
ATGCAACATACATATAACATGGC
Found at i:50447603 original size:27 final size:27
Alignment explanation
Indices: 50447558--50447697 Score: 122
Period size: 27 Copynumber: 5.2 Consensus size: 27
50447548 AACAAATTTA
* * * *
50447558 TCATTTTACCTTACCGGGGTATTACAG
1 TCATTTTACCCTACAGGGGTATTTCGG
50447585 TCATTTTACCCTACAGGGGTATTTCGG
1 TCATTTTACCCTACAGGGGTATTTCGG
* * ** *
50447612 TTATTCTACCCTATGGGGGTATTTCTG
1 TCATTTTACCCTACAGGGGTATTTCGG
* * *
50447639 TAATTTTACCCTA-TGACGGTATTTCGG
1 TCATTTTACCCTACAG-GGGTATTTCGG
** *
50447666 TCATTTTACCCTTGA-GGGTGTTTCGG
1 TCATTTTACCCTACAGGGGTATTTCGG
50447692 TCATTT
1 TCATTT
50447698 GATCACATAA
Statistics
Matches: 92, Mismatches: 19, Indels: 5
0.79 0.16 0.04
Matches are distributed among these distances:
26 16 0.17
27 76 0.83
ACGTcount: A:0.18, C:0.20, G:0.21, T:0.41
Consensus pattern (27 bp):
TCATTTTACCCTACAGGGGTATTTCGG
Found at i:50447695 original size:26 final size:27
Alignment explanation
Indices: 50447574--50447697 Score: 135
Period size: 27 Copynumber: 4.6 Consensus size: 27
50447564 TACCTTACCG
* * *
50447574 GGGTATTACAGTCATTTTACCCTA-CA
1 GGGTATTTCGGTCATTTTACCCTATGA
* * *
50447600 GGGGTATTTCGGTTATTCTACCCTATGG
1 -GGGTATTTCGGTCATTTTACCCTATGA
* *
50447628 GGGTATTTCTGTAATTTTACCCTATGA
1 GGGTATTTCGGTCATTTTACCCTATGA
*
50447655 CGGTATTTCGGTCATTTTACCCT-TGA
1 GGGTATTTCGGTCATTTTACCCTATGA
*
50447681 GGGTGTTTCGGTCATTT
1 GGGTATTTCGGTCATTT
50447698 GATCACATAA
Statistics
Matches: 81, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
26 18 0.22
27 63 0.78
ACGTcount: A:0.18, C:0.19, G:0.23, T:0.41
Consensus pattern (27 bp):
GGGTATTTCGGTCATTTTACCCTATGA
Found at i:50447730 original size:27 final size:27
Alignment explanation
Indices: 50447691--50448004 Score: 402
Period size: 27 Copynumber: 11.8 Consensus size: 27
50447681 GGGTGTTTCG
* * * * *
50447691 GTCATTTGATCACATAAAGGCAAAATT
1 GTCATTTTATCACATGAGGGTAAAATC
* * * *
50447718 ATCATTTTATCACATAAGGGCAAAATT
1 GTCATTTTATCACATGAGGGTAAAATC
* *
50447745 GTCATTTTATCACATAAGGGTAAAATT
1 GTCATTTTATCACATGAGGGTAAAATC
* * * * *
50447772 GTCATTTCATTATATAAGGGAAAAATC
1 GTCATTTTATCACATGAGGGTAAAATC
*
50447799 GTCATTTCATCACATGAGGGTAAAATC
1 GTCATTTTATCACATGAGGGTAAAATC
50447826 GTCATTTTATCAC---A-GGTAAAATC
1 GTCATTTTATCACATGAGGGTAAAATC
50447849 GTCATTTTATCACATGAGGGTAAAATC
1 GTCATTTTATCACATGAGGGTAAAATC
*
50447876 GTCATTTTATTACATGAGGGTAAAATC
1 GTCATTTTATCACATGAGGGTAAAATC
*
50447903 ATCATTTTATCACATGAGGGTAAAATC
1 GTCATTTTATCACATGAGGGTAAAATC
* *
50447930 GTCACTTTATCACATGAGGGTAAAGTC
1 GTCATTTTATCACATGAGGGTAAAATC
50447957 GTCATTTTATCACATGAGGGTAAAATC
1 GTCATTTTATCACATGAGGGTAAAATC
*
50447984 ATCATTTTATCACATGAGGGT
1 GTCATTTTATCACATGAGGGT
50448005 TCAAGTACAC
Statistics
Matches: 259, Mismatches: 24, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
23 22 0.08
24 1 0.00
26 1 0.00
27 235 0.91
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (27 bp):
GTCATTTTATCACATGAGGGTAAAATC
Found at i:50447880 original size:104 final size:106
Alignment explanation
Indices: 50447723--50447990 Score: 369
Period size: 104 Copynumber: 2.5 Consensus size: 106
50447713 AAATTATCAT
* * * * *
50447723 TTTATCACATAAGGGCAAAATTGTCATTTTATCACATAAGGGTAAAATTGTCATTTCATTATATA
1 TTTATCAC--AAGGGTAAAATCGTCATTTTATCACATGAGGGTAAAATCGTCATTTCATTACATA
* *
50447788 AGGGAAAAATCGTCATTTCATCACATGAGGGTAAAATCGTCAT
64 AGGGAAAAATCATCATTTCATCACATGAGGGTAAAATCGTCAC
* *
50447831 TTTATCAC-A-GGTAAAATCGTCATTTTATCACATGAGGGTAAAATCGTCATTTTATTACATGAG
1 TTTATCACAAGGGTAAAATCGTCATTTTATCACATGAGGGTAAAATCGTCATTTCATTACATAAG
* *
50447894 GGTAAAATCATCATTTTATCACATGAGGGTAAAATCGTCAC
66 GGAAAAATCATCATTTCATCACATGAGGGTAAAATCGTCAC
* *
50447935 TTTATCACATGAGGGTAAAGTCGTCATTTTATCACATGAGGGTAAAATCATCATTT
1 TTTATCACA--AGGGTAAAATCGTCATTTTATCACATGAGGGTAAAATCGTCATTT
50447991 TATCACATGA
Statistics
Matches: 143, Mismatches: 13, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
104 92 0.64
105 1 0.01
107 1 0.01
108 49 0.34
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
Consensus pattern (106 bp):
TTTATCACAAGGGTAAAATCGTCATTTTATCACATGAGGGTAAAATCGTCATTTCATTACATAAG
GGAAAAATCATCATTTCATCACATGAGGGTAAAATCGTCAC
Found at i:50449187 original size:24 final size:24
Alignment explanation
Indices: 50449135--50449187 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
50449125 CCCTTGATTT
50449135 CCTCCTAAAATCCCTCCTCATATC
1 CCTCCTAAAATCCCTCCTCATATC
* * *
50449159 TCTCCTCAACTCCCTCCTACAT-TC
1 CCTCCTAAAATCCCTCCT-CATATC
50449183 CCTCC
1 CCTCC
50449188 ATGACCAATT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
24 21 0.88
25 3 0.12
ACGTcount: A:0.19, C:0.51, G:0.00, T:0.30
Consensus pattern (24 bp):
CCTCCTAAAATCCCTCCTCATATC
Found at i:50449880 original size:48 final size:48
Alignment explanation
Indices: 50449775--50449907 Score: 151
Period size: 48 Copynumber: 2.8 Consensus size: 48
50449765 CTGTGGGCTT
* * * * *
50449775 GAACATATCTTATGTTCCCCAGCTATTCTAATAAGTGTATTAAGTGCAA
1 GAACATATTTTATGTTCCTCAGCAATTCTGATAAG-ATATTAAGTGCAA
* * *
50449824 GAATATATTTTATGTTCCTCAGCAATGCTGATAA-ATATGTAAGTGCGA
1 GAACATATTTTATGTTCCTCAGCAATTCTGATAAGATAT-TAAGTGCAA
* *
50449872 GAACATATTTTATGTTTCTCAGCCATTCTGATAAGA
1 GAACATATTTTATGTTCCTCAGCAATTCTGATAAGA
50449908 CAAATATGTA
Statistics
Matches: 70, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
47 3 0.04
48 38 0.54
49 29 0.41
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (48 bp):
GAACATATTTTATGTTCCTCAGCAATTCTGATAAGATATTAAGTGCAA
Found at i:50453108 original size:3 final size:3
Alignment explanation
Indices: 50453100--50453131 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
50453090 GTTTGAAAAC
*
50453100 ATA ATA ATA ATA ATA ATA ACA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
50453132 GAGAGTTGCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:50453441 original size:25 final size:25
Alignment explanation
Indices: 50453404--50453470 Score: 71
Period size: 25 Copynumber: 2.6 Consensus size: 25
50453394 GTAGAATATT
50453404 TAATATGTAAATTATATTTAAAATAA
1 TAATAT-TAAATTATATTTAAAATAA
* **
50453430 TAATATTAAATTATTTTTTTAATAA
1 TAATATTAAATTATATTTAAAATAA
* *
50453455 TATTGAATAAATTATA
1 TAAT-ATTAAATTATA
50453471 AATTATAAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
25 19 0.56
26 15 0.44
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.48
Consensus pattern (25 bp):
TAATATTAAATTATATTTAAAATAA
Found at i:50457643 original size:22 final size:22
Alignment explanation
Indices: 50457603--50457644 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
50457593 ACGGTTTATC
*
50457603 AGGGGTACACGGCTATGTGGAA
1 AGGGGTACACGGCCATGTGGAA
*
50457625 AGGGGTACACGGCCGTGTGG
1 AGGGGTACACGGCCATGTGG
50457645 CCAGGTCCTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.21, C:0.17, G:0.45, T:0.17
Consensus pattern (22 bp):
AGGGGTACACGGCCATGTGGAA
Found at i:50458692 original size:3 final size:3
Alignment explanation
Indices: 50458684--50458715 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
50458674 ATTCGATCTT
50458684 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
50458716 TTGTAAAAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:50459147 original size:27 final size:27
Alignment explanation
Indices: 50459108--50459171 Score: 110
Period size: 27 Copynumber: 2.4 Consensus size: 27
50459098 ATCTAAATCC
*
50459108 AAATGTAAGAACCTTATGGTTTCATTA
1 AAATGTAAAAACCTTATGGTTTCATTA
50459135 AAATGTAAAAACCTTATGGTTTCATTA
1 AAATGTAAAAACCTTATGGTTTCATTA
*
50459162 AATTGTAAAA
1 AAATGTAAAA
50459172 CCTATTTAAC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.42, C:0.09, G:0.12, T:0.36
Consensus pattern (27 bp):
AAATGTAAAAACCTTATGGTTTCATTA
Found at i:50460074 original size:19 final size:20
Alignment explanation
Indices: 50459988--50460084 Score: 58
Period size: 21 Copynumber: 4.7 Consensus size: 20
50459978 GTGACCCGAT
*
50459988 TTTTTTTTTGCAAAATC-AAAG
1 TTTTTTTTT--AAAATCAAAAC
50460009 TTTTCTTTTTAAAA--AAATCAC
1 TTTT-TTTTTAAAATCAAA--AC
*
50460030 TATTTTTCTTAAAGATCAAAAC
1 T-TTTTTTTTAAA-ATCAAAAC
*
50460052 TTTTTTTTTAAAATTAAAA-
1 TTTTTTTTTAAAATCAAAAC
**
50460071 TTTTCCTTTAAAAT
1 TTTTTTTTTAAAAT
50460085 GACTAAAAAA
Statistics
Matches: 62, Mismatches: 6, Indels: 18
0.72 0.07 0.21
Matches are distributed among these distances:
19 14 0.23
20 10 0.16
21 23 0.37
22 12 0.19
24 3 0.05
ACGTcount: A:0.37, C:0.10, G:0.03, T:0.49
Consensus pattern (20 bp):
TTTTTTTTTAAAATCAAAAC
Found at i:50461128 original size:42 final size:42
Alignment explanation
Indices: 50461078--50461222 Score: 175
Period size: 42 Copynumber: 3.5 Consensus size: 42
50461068 GCCTTCATAT
* * * *
50461078 AATGCAATGAAAAGTAAATAAACCTCCATACCTGGGCCTTTA
1 AATGCAACGAAAAGTAAACAAACATCCACACCTGGGCCTTTA
* * *
50461120 AATGCAATGCAAAGTAAACGAAA-ATCCCCACCTGGGCCTTTA
1 AATGCAACGAAAAGTAAAC-AAACATCCACACCTGGGCCTTTA
* * * *
50461162 AATGCAACGAAAAGTAAACAGACATCCACACTTGAGCCTCTA
1 AATGCAACGAAAAGTAAACAAACATCCACACCTGGGCCTTTA
50461204 AATGCAACGAAAAGTAAAC
1 AATGCAACGAAAAGTAAAC
50461223 GGACCTCCAC
Statistics
Matches: 89, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
41 2 0.02
42 84 0.94
43 3 0.03
ACGTcount: A:0.43, C:0.23, G:0.15, T:0.19
Consensus pattern (42 bp):
AATGCAACGAAAAGTAAACAAACATCCACACCTGGGCCTTTA
Found at i:50461232 original size:42 final size:42
Alignment explanation
Indices: 50461078--50461252 Score: 172
Period size: 42 Copynumber: 4.2 Consensus size: 42
50461068 GCCTTCATAT
* * * * * *
50461078 AATGCAATGAAAAGTAAATAAACCTCCATACCTGGGCCTTTA
1 AATGCAACGAAAAGTAAACAAACATCCACACCTGAGCCTCTA
* * * * *
50461120 AATGCAATGCAAAGTAAACGAAA-ATCCCCACCTGGGCCTTTA
1 AATGCAACGAAAAGTAAAC-AAACATCCACACCTGAGCCTCTA
* *
50461162 AATGCAACGAAAAGTAAACAGACATCCACACTTGAGCCTCTA
1 AATGCAACGAAAAGTAAACAAACATCCACACCTGAGCCTCTA
** * * *
50461204 AATGCAACGAAAAGTAAACGGACCTCCACACTTGAGTCTCTA
1 AATGCAACGAAAAGTAAACAAACATCCACACCTGAGCCTCTA
50461246 AATGCAA
1 AATGCAA
50461253 TATGAGACAT
Statistics
Matches: 116, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
41 2 0.02
42 111 0.96
43 3 0.03
ACGTcount: A:0.41, C:0.25, G:0.15, T:0.19
Consensus pattern (42 bp):
AATGCAACGAAAAGTAAACAAACATCCACACCTGAGCCTCTA
Found at i:50462985 original size:13 final size:13
Alignment explanation
Indices: 50462967--50462991 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50462957 CGTGAAGTCA
50462967 AATTTCTTGCATC
1 AATTTCTTGCATC
50462980 AATTTCTTGCAT
1 AATTTCTTGCAT
50462992 GTCCAAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.20, G:0.08, T:0.48
Consensus pattern (13 bp):
AATTTCTTGCATC
Found at i:50468106 original size:12 final size:12
Alignment explanation
Indices: 50468089--50468113 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
50468079 AGCCGAAACT
50468089 AGAAAGAAAAAA
1 AGAAAGAAAAAA
50468101 AGAAAGAAAAAA
1 AGAAAGAAAAAA
50468113 A
1 A
50468114 AATGCTCATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (12 bp):
AGAAAGAAAAAA
Found at i:50469288 original size:39 final size:40
Alignment explanation
Indices: 50469193--50469454 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
50469183 TTGAATGATG
*
50469193 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
50469231 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
50469272 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
50469311 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
50469350 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
50469389 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
50469428 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
50469455 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:50490576 original size:207 final size:207
Alignment explanation
Indices: 50490046--50490946 Score: 1554
Period size: 207 Copynumber: 4.4 Consensus size: 207
50490036 GCAGATCTGG
*
50490046 CTGAAGCAAGATCCAAGATGATTTGACATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
1 CTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
50490111 GATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
66 GATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* * ** * **
50490176 AGAGCAGATCGAAGTTTGGCGTCTCCATATTCGACTCAGGGCAGACACATAGCAGATCTAACCTT
131 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTGGCCTT
* *
50490241 CAGATGATTAGA
196 CAGATGTTTATA
* * *
50490253 CTGAAGC-AGATCCAATATGATTTGGCATCCTTGTGTTTACAAGAAACAAATCGAA-ATCATAGC
1 CTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGA-CATAGC
*
50490316 TGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTTTGTATTGTCA
65 TGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCA
* *
50490381 GAGAACAAATCGAAGGTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGTAGATCTGGCCT
130 GAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTGGCCT
50490446 TCAGATGTTTATA
195 TCAGATGTTTATA
* *
50490459 CTGAAGCAATATCCAAGATAATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
1 CTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
*
50490524 GATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTCGGCATCTCTGTATTGTCAG
66 GATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
*
50490589 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAAAGCAGACACATAGCAGATCTGGCCTT
131 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTGGCCTT
50490654 CAGATGTTTATA
196 CAGATGTTTATA
*
50490666 CTGAATCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
1 CTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
50490731 GATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
66 GATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* *
50490796 AGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGAGTAGACACATAGCAGATCTGGCCTT
131 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTGGCCTT
50490861 CAGATGTTTATA
196 CAGATGTTTATA
*
50490873 CTGAAGCAAGATCCAAGATAATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
1 CTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
*
50490938 AATTTGGCT
66 GATTTGGCT
50490947 GAAGCAGACC
Statistics
Matches: 655, Mismatches: 36, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
205 1 0.00
206 188 0.29
207 465 0.71
208 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (207 bp):
CTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
GATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTGGCCTT
CAGATGTTTATA
Found at i:50494037 original size:174 final size:174
Alignment explanation
Indices: 50493747--50494074 Score: 638
Period size: 174 Copynumber: 1.9 Consensus size: 174
50493737 AACTCAAGGT
* *
50493747 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
50493812 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
50493877 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGTAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGTAC
50493921 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
50493986 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
50494051 ACTTTAAACTCACACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
50494075 TGTACAATTT
Statistics
Matches: 152, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
174 152 1.00
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGTAC
Found at i:50494068 original size:29 final size:30
Alignment explanation
Indices: 50494034--50494105 Score: 96
Period size: 29 Copynumber: 2.5 Consensus size: 30
50494024 ATCAACCGCG
*
50494034 CACACTTAGTGCCATGTAC-TTTAAACTCA
1 CACACTTAGTGCCATGTACATTTAAACCCA
*
50494063 CACACTTAGTG-C-TGTACAATTTAAACCCG
1 CACACTTAGTGCCATGTAC-ATTTAAACCCA
50494092 CACACTTAGTGCCA
1 CACACTTAGTGCCA
50494106 ATCTCATGAC
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
27 5 0.14
28 1 0.03
29 30 0.81
30 1 0.03
ACGTcount: A:0.31, C:0.29, G:0.12, T:0.28
Consensus pattern (30 bp):
CACACTTAGTGCCATGTACATTTAAACCCA
Found at i:50509242 original size:14 final size:14
Alignment explanation
Indices: 50509223--50509252 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
50509213 TATCTTATAA
50509223 ATATGCGTGAATCT
1 ATATGCGTGAATCT
*
50509237 ATATGCGTTAATCT
1 ATATGCGTGAATCT
50509251 AT
1 AT
50509253 CTTAAAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.40
Consensus pattern (14 bp):
ATATGCGTGAATCT
Found at i:50534877 original size:13 final size:13
Alignment explanation
Indices: 50534859--50534883 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50534849 TTTTTTGGAC
50534859 ATGCAAGAAATTG
1 ATGCAAGAAATTG
50534872 ATGCAAGAAATT
1 ATGCAAGAAATT
50534884 TGACTTCATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.20, T:0.24
Consensus pattern (13 bp):
ATGCAAGAAATTG
Found at i:50536367 original size:16 final size:17
Alignment explanation
Indices: 50536337--50536369 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
50536327 TAGAGTCACC
50536337 TTCATAATGATCATGAA
1 TTCATAATGATCATGAA
50536354 TTCATAAT-ATCATGAA
1 TTCATAATGATCATGAA
50536370 GCCAATGCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.42, C:0.12, G:0.09, T:0.36
Consensus pattern (17 bp):
TTCATAATGATCATGAA
Found at i:50536724 original size:50 final size:50
Alignment explanation
Indices: 50536606--50536840 Score: 296
Period size: 50 Copynumber: 4.7 Consensus size: 50
50536596 TCTCGTATTG
* * ** *
50536606 ATGCCATGTCCCAGACATGGTCTTATACGAAAT-A-ATATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATATCTATGCCA
* * * * *
50536654 ATGCCATATCCTAGATATGGTCTTACATGGGATCATATATAT-TGATGCTA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATATCT-ATGCCA
* **
50536704 ATACCATGTCTTAGACATGGTCTTACATGGGATCACATATATCTATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATATCTATGCCA
* * *
50536754 ATGCCATGTCCCAGACATTGTCTTACATAGGATCACATATATCTATGTCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATATCTATGCCA
50536804 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACA
50536841 CATAACCCTA
Statistics
Matches: 160, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
48 26 0.16
49 1 0.01
50 132 0.82
51 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (50 bp):
ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATATCTATGCCA
Found at i:50546797 original size:46 final size:46
Alignment explanation
Indices: 50546747--50546922 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
50546737 TGGTTGAGCA
*
50546747 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
50546793 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
50546840 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * **
50546886 CCCGAGCTCGTTGAGTTGAGTCCGAGTTTGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
50546923 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 62 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:50546903 original size:93 final size:93
Alignment explanation
Indices: 50546744--50546913 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 93
50546734 GGATGGTTGA
* * *
50546744 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
50546809 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
50546837 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
50546902 TGAGTCCGAGTT
66 TGAGTCCGAGTT
50546914 TGCTTATGGG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:50549367 original size:25 final size:25
Alignment explanation
Indices: 50549339--50549432 Score: 107
Period size: 25 Copynumber: 3.8 Consensus size: 25
50549329 GTTTCGACCC
*
50549339 ACAGCTCGTGTGAGCATACCAATTT
1 ACAGCTCGTGTGAGCATACCGATTT
* * *
50549364 ACAGCTTGTGAGAGCATATCGATTT
1 ACAGCTCGTGTGAGCATACCGATTT
* * *
50549389 ACAGCTAGAGTGAGCATACCGATTC
1 ACAGCTCGTGTGAGCATACCGATTT
* *
50549414 ACAGTTCGTATGAGCATAC
1 ACAGCTCGTGTGAGCATAC
50549433 ATGTACATGA
Statistics
Matches: 56, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 56 1.00
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (25 bp):
ACAGCTCGTGTGAGCATACCGATTT
Found at i:50551567 original size:23 final size:23
Alignment explanation
Indices: 50551536--50551580 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
50551526 AGAACTTTTA
*
50551536 ATCGAGAAGCTCACCAAGAGCCT
1 ATCGAGAAGCTCACAAAGAGCCT
*
50551559 ATCGGGAAGCTCACAAAGAGCC
1 ATCGAGAAGCTCACAAAGAGCC
50551581 ATGTAACAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.36, C:0.29, G:0.24, T:0.11
Consensus pattern (23 bp):
ATCGAGAAGCTCACAAAGAGCCT
Found at i:50563193 original size:12 final size:12
Alignment explanation
Indices: 50563176--50563201 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
50563166 CCTTACACAC
50563176 CCATGTGCTAGG
1 CCATGTGCTAGG
50563188 CCATGTGCTAGG
1 CCATGTGCTAGG
50563200 CC
1 CC
50563202 GTGCCAAACG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.31, G:0.31, T:0.23
Consensus pattern (12 bp):
CCATGTGCTAGG
Found at i:50565544 original size:41 final size:40
Alignment explanation
Indices: 50565445--50565548 Score: 111
Period size: 40 Copynumber: 2.6 Consensus size: 40
50565435 CTTTTATCAA
** *
50565445 ATCACCGGCATTTAGCCTGCTAGGTTTTAAACTCGAATTC
1 ATCACCGGCATTTAGCCTGCTAGACTTTAAACTCGAACTC
*** *
50565485 ATCACCGGCACGAAGCCTGCTAGACTTT-AAGTCTGAACTC
1 ATCACCGGCATTTAGCCTGCTAGACTTTAAACTC-GAACTC
*
50565525 ATTCACCGGCATTTTGCCTGCTAG
1 A-TCACCGGCATTTAGCCTGCTAG
50565549 GCTTGAAGCC
Statistics
Matches: 51, Mismatches: 11, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
39 4 0.08
40 29 0.57
41 18 0.35
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (40 bp):
ATCACCGGCATTTAGCCTGCTAGACTTTAAACTCGAACTC
Found at i:50565593 original size:43 final size:43
Alignment explanation
Indices: 50565526--50565696 Score: 161
Period size: 43 Copynumber: 4.0 Consensus size: 43
50565516 TCTGAACTCA
* **
50565526 TTCACCGGCATT-TTGCCTGCTAGGCTTGAAGCCCAATATCAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCAATATCAT
* * * *
50565568 TTCACTGGCATTATAGCCTGCTAGGCCGGAAGCCCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCAATATCAT
* *
50565611 CTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATAAT-ATT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCAAT-ATCA-T
* * * *
50565655 ATTCACCAGC-TTAAAGCTTGCTAGG-CCGAGGCCCGAATATCA
1 -TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCC-AATATCA
50565697 CATTTCGATA
Statistics
Matches: 108, Mismatches: 15, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
42 11 0.10
43 71 0.66
44 19 0.18
45 7 0.06
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.26
Consensus pattern (43 bp):
TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCAATATCAT
Found at i:50565689 original size:86 final size:85
Alignment explanation
Indices: 50565527--50565690 Score: 190
Period size: 86 Copynumber: 1.9 Consensus size: 85
50565517 CTGAACTCAT
* ** ** *
50565527 TCACCGGCATTTTGCCTGCTAGGCTTGAAGCCCAATATCATTTCACTGGCATTATAGCCTGCTAG
1 TCACCGGCATTTAGCCTGCTAGGCCCGAAGCCCAATATCATTTCACCAGCATTAAAGCCTGCTAG
50565592 GCCGGAAGCCCGATATTATC
66 GCCGGAAGCCCGATATTATC
* *
50565612 TCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATAAT-ATTATTCACCAGC-TTAAAGCTTG
1 TCACCGGCATT-TAGCCTGCTAGGCCCGAAGCCCAAT-ATCA-T-TTCACCAGCATTAAAGCCTG
*
50565675 CTAGGCC-GAGGCCCGA
62 CTAGGCCGGAAGCCCGA
50565691 ATATCACATT
Statistics
Matches: 66, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
85 11 0.17
86 30 0.45
87 18 0.27
88 7 0.11
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.25
Consensus pattern (85 bp):
TCACCGGCATTTAGCCTGCTAGGCCCGAAGCCCAATATCATTTCACCAGCATTAAAGCCTGCTAG
GCCGGAAGCCCGATATTATC
Found at i:50566838 original size:29 final size:28
Alignment explanation
Indices: 50566797--50566864 Score: 77
Period size: 29 Copynumber: 2.4 Consensus size: 28
50566787 ACACTCACAC
* *
50566797 AACCATATATTTC-ACAATTTCACATTTT
1 AACCATAAATTTCTAC-ATTTCACAATTT
50566825 AACCACTAAATTTCTACATTTCACAATTT
1 AACCA-TAAATTTCTACATTTCACAATTT
50566854 AATCCA-AAATT
1 AA-CCATAAATT
50566865 GACATTTTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
28 10 0.29
29 20 0.57
30 5 0.14
ACGTcount: A:0.40, C:0.22, G:0.00, T:0.38
Consensus pattern (28 bp):
AACCATAAATTTCTACATTTCACAATTT
Found at i:50575561 original size:18 final size:19
Alignment explanation
Indices: 50575538--50575592 Score: 71
Period size: 18 Copynumber: 3.1 Consensus size: 19
50575528 CTTGGCCCAT
50575538 TGCAGTAACAGTAAAT-AG
1 TGCAGTAACAGTAAATCAG
* *
50575556 TGCAGTAAAAAT-AATCAG
1 TGCAGTAACAGTAAATCAG
50575574 TGCAGTAACAGTAAA-CAG
1 TGCAGTAACAGTAAATCAG
50575592 T
1 T
50575593 ATGCAAATCC
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
17 3 0.10
18 26 0.84
19 2 0.06
ACGTcount: A:0.45, C:0.13, G:0.20, T:0.22
Consensus pattern (19 bp):
TGCAGTAACAGTAAATCAG
Found at i:50575955 original size:27 final size:27
Alignment explanation
Indices: 50575917--50576196 Score: 296
Period size: 27 Copynumber: 10.4 Consensus size: 27
50575907 ACACAAACAT
*
50575917 CACATAGGGGCAAAA-CAGTCATTTTAC
1 CACATAAGGGCAAAATC-GTCATTTTAC
* * *
50575944 CTCATAAGGGCAAAACCGTCATGTTAC
1 CACATAAGGGCAAAATCGTCATTTTAC
* * *
50575971 CTCATAAGGGAAAAATCGTCATTTTAT
1 CACATAAGGGCAAAATCGTCATTTTAC
* * *
50575998 CACATAAGGACAAAATAGTCATTTTGC
1 CACATAAGGGCAAAATCGTCATTTTAC
* *
50576025 CACATAAGGG-AAAAACTATCATTTTAC
1 CACATAAGGGCAAAATC-GTCATTTTAC
* * *
50576052 CTCATAAAGGCAAAATCGTCATTTTAT
1 CACATAAGGGCAAAATCGTCATTTTAC
* *
50576079 CACATAAGGGCAAAACCGTCATTTTGC
1 CACATAAGGGCAAAATCGTCATTTTAC
* *
50576106 CACATAAGGGAAAAATCGTCATTTTAA
1 CACATAAGGGCAAAATCGTCATTTTAC
* *
50576133 CTCATAAGGGCAAAATCGTCATTTTAT
1 CACATAAGGGCAAAATCGTCATTTTAC
* *
50576160 CACATAAGGG-AAAAGCAGTCATTTTAT
1 CACATAAGGGCAAAATC-GTCATTTTAC
*
50576187 CTCATAAGGG
1 CACATAAGGG
50576197 TTCAGGTACA
Statistics
Matches: 211, Mismatches: 38, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
26 9 0.04
27 196 0.93
28 6 0.03
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (27 bp):
CACATAAGGGCAAAATCGTCATTTTAC
Found at i:50576052 original size:81 final size:81
Alignment explanation
Indices: 50575915--50576184 Score: 391
Period size: 81 Copynumber: 3.3 Consensus size: 81
50575905 ATACACAAAC
* * * * * *
50575915 ATCACATAGGGGCAAAACAGTCATTTTACCTCATAAGGGCAAAACCGTCATGTTACCTCATAAGG
1 ATCACATAAGGGCAAAACAGTCATTTTGCCACATAAGGGAAAAACTGTCATTTTACCTCATAAGG
*
50575980 GAAAAATCGTCATTTT
66 GCAAAATCGTCATTTT
* * * *
50575996 ATCACATAAGGACAAAATAGTCATTTTGCCACATAAGGGAAAAACTATCATTTTACCTCATAAAG
1 ATCACATAAGGGCAAAACAGTCATTTTGCCACATAAGGGAAAAACTGTCATTTTACCTCATAAGG
50576061 GCAAAATCGTCATTTT
66 GCAAAATCGTCATTTT
* *
50576077 ATCACATAAGGGCAAAACCGTCATTTTGCCACATAAGGGAAAAA-TCGTCATTTTAACTCATAAG
1 ATCACATAAGGGCAAAACAGTCATTTTGCCACATAAGGGAAAAACT-GTCATTTTACCTCATAAG
50576141 GGCAAAATCGTCATTTT
65 GGCAAAATCGTCATTTT
50576158 ATCACATAAGGG-AAAAGCAGTCATTTT
1 ATCACATAAGGGCAAAA-CAGTCATTTT
50576185 ATCTCATAAG
Statistics
Matches: 169, Mismatches: 18, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
80 5 0.03
81 164 0.97
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (81 bp):
ATCACATAAGGGCAAAACAGTCATTTTGCCACATAAGGGAAAAACTGTCATTTTACCTCATAAGG
GCAAAATCGTCATTTT
Found at i:50579421 original size:39 final size:39
Alignment explanation
Indices: 50579367--50579478 Score: 197
Period size: 39 Copynumber: 2.9 Consensus size: 39
50579357 TGCATGATAT
50579367 TGGGAATATATCCGGACATGAGGTCCGCAGGCTATATGC
1 TGGGAATATATCCGGACATGAGGTCCGCAGGCTATATGC
*
50579406 TGGGAATATACCCGGACATGAGGTCCGCAGGCTATATGC
1 TGGGAATATATCCGGACATGAGGTCCGCAGGCTATATGC
* *
50579445 TGGAAATATATCCGGACATGAGGTCCACAGGCTA
1 TGGGAATATATCCGGACATGAGGTCCGCAGGCTA
50579479 CGTGCTGAAT
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 69 1.00
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.21
Consensus pattern (39 bp):
TGGGAATATATCCGGACATGAGGTCCGCAGGCTATATGC
Found at i:50581320 original size:39 final size:40
Alignment explanation
Indices: 50581217--50581439 Score: 239
Period size: 39 Copynumber: 5.7 Consensus size: 40
50581207 TTGAATGCTG
*
50581217 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
50581255 ATCCGGACTAAGAT-CCAAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
50581296 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
50581335 TCCGGGCTAAG-CCCGAAGGCATTTGTACGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
50581374 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* * *
50581413 AACTGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
50581440 AACGAGGAGC
Statistics
Matches: 159, Mismatches: 16, Indels: 17
0.83 0.08 0.09
Matches are distributed among these distances:
39 90 0.57
40 57 0.36
41 11 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:50581398 original size:79 final size:81
Alignment explanation
Indices: 50581217--50581445 Score: 258
Period size: 79 Copynumber: 2.9 Consensus size: 81
50581207 TTGAATGCTG
* * * *
50581217 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGATCCAAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATATCCGGGCTAAGACCCGAAGGCAT
* *
50581279 TTGTGCGAGATACTAAT
65 TTGTACGAGATACTAAA
50581296 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGATACTAAT-TCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATATCCGGGCTAAGACCCGAAGGCAT
*
50581357 TTGTACGAGTTACTAAA
65 TTGTACGAGATACTAAA
* * * * * *
50581374 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATAACTGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
*
50581438 TGAACGAG
66 TGTACGAG
50581446 GAGCTATATC
Statistics
Matches: 129, Mismatches: 13, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
78 44 0.34
79 55 0.43
80 30 0.23
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTACGAGATACTAAA
Found at i:50585093 original size:6 final size:6
Alignment explanation
Indices: 50585082--50585109 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
50585072 TTTTTTTAAA
50585082 AAAAAT AAAAAT AAAAAT AAAAAT AAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAA
50585110 TCTAATAACT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:50590644 original size:15 final size:14
Alignment explanation
Indices: 50590620--50590649 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
50590610 TCTAATTTTC
50590620 AAAAAAAACAAAAT
1 AAAAAAAACAAAAT
50590634 AAAACAAAACAAAAT
1 AAAA-AAAACAAAAT
50590649 A
1 A
50590650 CTCTAAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.83, C:0.10, G:0.00, T:0.07
Consensus pattern (14 bp):
AAAAAAAACAAAAT
Found at i:50594965 original size:44 final size:40
Alignment explanation
Indices: 50594900--50595051 Score: 115
Period size: 43 Copynumber: 3.6 Consensus size: 40
50594890 ATGTGTGTTT
* * * *
50594900 GTGTAAGACCACGTTTGGGACGCTGGCATCGACTTATGATTTAG
1 GTGTAAGACCATGTCTAGGACG-TGGCATCGA-TT-TGATTT-C
* *
50594944 GTGTAAGACCATGTCTAGGACGTTGACATCGTATTTGGTTTC
1 GTGTAAGACCATGTCTAGGACG-TGGCATCG-ATTTGATTTC
* * *
50594986 GTGTAAGACCCTTTCTAGGACAGTGGCATCGATATTTGATTAC
1 GTGTAAGACCATGTCTAGGAC-GTGGCATCG--ATTTGATTTC
* * *
50595029 ATGTAAGACCACGTCTGGGACGT
1 GTGTAAGACCATGTCTAGGACGT
50595052 CGGTATTATA
Statistics
Matches: 88, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
42 28 0.32
43 31 0.35
44 28 0.32
45 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (40 bp):
GTGTAAGACCATGTCTAGGACGTGGCATCGATTTGATTTC
Found at i:50595036 original size:43 final size:42
Alignment explanation
Indices: 50594945--50595051 Score: 117
Period size: 42 Copynumber: 2.5 Consensus size: 42
50594935 ATGATTTAGG
* * *
50594945 TGTAAGACCATGTCTAGGACGTTGACATCGTATTTGGTTTCG
1 TGTAAGACCATGTCTAGGACGTTGACATCGTATTTGATTACA
* * *
50594987 TGTAAGACCCTTTCTAGGACAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCATGTCTAGGAC-GTTGACATCG-TATTTGATTACA
* *
50595030 TGTAAGACCACGTCTGGGACGT
1 TGTAAGACCATGTCTAGGACGT
50595052 CGGTATTATA
Statistics
Matches: 52, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
42 26 0.50
43 26 0.50
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (42 bp):
TGTAAGACCATGTCTAGGACGTTGACATCGTATTTGATTACA
Found at i:50604665 original size:27 final size:27
Alignment explanation
Indices: 50604634--50604811 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
50604624 TAAATTGTAC
50604634 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * ** *
50604661 TGCACTATGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
50604687 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
50604715 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
50604743 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
50604770 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
50604797 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
50604812 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:50604748 original size:82 final size:81
Alignment explanation
Indices: 50604635--50604790 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
50604625 AAATTGTACA
* * *
50604635 GCACTAAGTGTGCGATTTGACTATGTTGCACTATGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
50604699 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
50604716 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
50604781 TGCGAGTTGA
65 TGCGAATTGA
50604791 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:50604802 original size:82 final size:81
Alignment explanation
Indices: 50604631--50604811 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
50604621 GATTAAATTG
* * *
50604631 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTATGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
50604696 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
50604712 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
50604776 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
50604794 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
50604812 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:50614504 original size:17 final size:17
Alignment explanation
Indices: 50614482--50614516 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
50614472 TAATTAGACC
50614482 ATTAAAGAAAAGTATGT
1 ATTAAAGAAAAGTATGT
50614499 ATTAAAGAAAAGTATGT
1 ATTAAAGAAAAGTATGT
50614516 A
1 A
50614517 GACTTTTGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.54, C:0.00, G:0.17, T:0.29
Consensus pattern (17 bp):
ATTAAAGAAAAGTATGT
Found at i:50629562 original size:40 final size:40
Alignment explanation
Indices: 50629507--50629643 Score: 224
Period size: 40 Copynumber: 3.5 Consensus size: 40
50629497 CGGATGATAA
50629507 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
50629547 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTGTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* *
50629587 CCGGGCTAGGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
50629627 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
50629644 ATACTTGGGT
Statistics
Matches: 91, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
38 1 0.01
39 12 0.13
40 78 0.86
ACGTcount: A:0.22, C:0.23, G:0.31, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:50629912 original size:22 final size:22
Alignment explanation
Indices: 50629870--50629913 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
50629860 AAAATGTGCA
* *
50629870 TATATGAAGTTATTCATTTAGC
1 TATATGAAGTTATACACTTAGC
50629892 TATATGAATGTTATAC-CTTAGC
1 TATATGAA-GTTATACACTTAGC
50629914 CGAAACTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATATGAAGTTATACACTTAGC
Found at i:50637616 original size:40 final size:40
Alignment explanation
Indices: 50637560--50637736 Score: 286
Period size: 40 Copynumber: 4.5 Consensus size: 40
50637550 CGGATGATAA
50637560 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
50637600 TCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
50637640 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTGTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* * *
50637680 CCGGGCTAGGACCCGATGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
50637720 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
50637737 ATACTTGGGT
Statistics
Matches: 127, Mismatches: 9, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
38 1 0.01
39 11 0.09
40 115 0.91
ACGTcount: A:0.21, C:0.23, G:0.31, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:50638005 original size:22 final size:22
Alignment explanation
Indices: 50637963--50638006 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
50637953 AAAATGTGCA
* *
50637963 TATATGAAGTTATTCATTTAGC
1 TATATGAAGTTATACACTTAGC
50637985 TATATGAATGTTATAC-CTTAGC
1 TATATGAA-GTTATACACTTAGC
50638007 CGAAACTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATATGAAGTTATACACTTAGC
Found at i:50649352 original size:51 final size:51
Alignment explanation
Indices: 50649276--50649376 Score: 184
Period size: 51 Copynumber: 2.0 Consensus size: 51
50649266 CACCCTTTAC
50649276 CCATGTCCGATGCCGGAACAGGGTACGAGACATTACCGGACTTAAACATAT
1 CCATGTCCGATGCCGGAACAGGGTACGAGACATTACCGGACTTAAACATAT
* *
50649327 CCATGTCCGATGCTGGAATAGGGTACGAGACATTACCGGACTTAAACATA
1 CCATGTCCGATGCCGGAACAGGGTACGAGACATTACCGGACTTAAACATA
50649377 CACATTCATG
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 48 1.00
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.21
Consensus pattern (51 bp):
CCATGTCCGATGCCGGAACAGGGTACGAGACATTACCGGACTTAAACATAT
Found at i:50652215 original size:20 final size:18
Alignment explanation
Indices: 50652181--50652218 Score: 58
Period size: 20 Copynumber: 2.0 Consensus size: 18
50652171 GGAAAAAAAT
50652181 GGAGAGAAAAATGAGAGA
1 GGAGAGAAAAATGAGAGA
50652199 GGAGAAGAAAGAATGAGAGA
1 GGAG-AGAAA-AATGAGAGA
50652219 ATGTTGTGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.22
19 5 0.28
20 9 0.50
ACGTcount: A:0.55, C:0.00, G:0.39, T:0.05
Consensus pattern (18 bp):
GGAGAGAAAAATGAGAGA
Found at i:50659510 original size:87 final size:87
Alignment explanation
Indices: 50659411--50659584 Score: 285
Period size: 87 Copynumber: 2.0 Consensus size: 87
50659401 ATCCTTAATT
*
50659411 AAGATCAAGAAAAGAGGAATTCAGACTTAGACCAAGGAAAATTGAAGATTGTAGAATAAACAGTC
1 AAGATCAAGAAAAGAGGAATTCAGACTTAGACCAAGGAAAATCGAAGATTGTAGAATAAACAGTC
*
50659476 CAAGTCGACAAATTATGAGTAC
66 CAAGTCGAAAAATTATGAGTAC
* * *
50659498 AAGATCAAGAAAAGAGGAATTCAGACTTAGATCGAGGGAAATCGAAGATTGTAGAATAAACAGTC
1 AAGATCAAGAAAAGAGGAATTCAGACTTAGACCAAGGAAAATCGAAGATTGTAGAATAAACAGTC
* *
50659563 CGAGTCGAAAAATTCTGAGTAC
66 CAAGTCGAAAAATTATGAGTAC
50659585 GAGGTAAGTT
Statistics
Matches: 80, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
87 80 1.00
ACGTcount: A:0.45, C:0.13, G:0.22, T:0.20
Consensus pattern (87 bp):
AAGATCAAGAAAAGAGGAATTCAGACTTAGACCAAGGAAAATCGAAGATTGTAGAATAAACAGTC
CAAGTCGAAAAATTATGAGTAC
Found at i:50672399 original size:47 final size:48
Alignment explanation
Indices: 50672290--50672417 Score: 179
Period size: 46 Copynumber: 2.7 Consensus size: 48
50672280 CATAGGGTAT
* *
50672290 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTC
* * * * *
50672338 GAGGCCGATG-CATGTCCGAGACAT-GTCTTACACTAGCTCCCGTCTC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTC
50672384 AATGCCGATGCCATGTCCCAGACATGGTCTTACA
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACA
50672418 TTGGCTCTCA
Statistics
Matches: 68, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
46 26 0.38
47 26 0.38
48 16 0.24
ACGTcount: A:0.23, C:0.31, G:0.21, T:0.25
Consensus pattern (48 bp):
AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTC
Found at i:50672446 original size:47 final size:46
Alignment explanation
Indices: 50672293--50672468 Score: 148
Period size: 47 Copynumber: 3.7 Consensus size: 46
50672283 AGGGTATAAT
* *
50672293 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACAT-CTCGAG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCT-CATAAT-GTG
* *
50672341 GCCGATGCATGTCCGAGACATGTCTTACACTAGCTCCCGTC-TCAA--T-
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCT--C-TCAT-AATGTG
*
50672387 GCCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATAATGTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATAATGTG
* * *
50672435 GCCAATGCATGTCCCAAACATATCTTACACTGGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC
50672469 ACACAAATAA
Statistics
Matches: 105, Mismatches: 11, Indels: 26
0.74 0.08 0.18
Matches are distributed among these distances:
45 4 0.04
46 33 0.31
47 40 0.38
48 26 0.25
49 1 0.01
50 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAATGTG
Found at i:50672461 original size:94 final size:94
Alignment explanation
Indices: 50672290--50672465 Score: 257
Period size: 94 Copynumber: 1.9 Consensus size: 94
50672280 CATAGGGTAT
* *
50672290 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGGCCGATGCATGTCC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATATCGAGGCCAATGCATGTCC
* * *
50672355 GAGACATGTCTTACACTAGCTCCCGTCTC
66 CAAACATATCTTACACTAGCTCCCGTCTC
* *
50672384 AATGCCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCT-CATAAT-GTGGCCAATGCATGT
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACAT-ATCGAGGCCAATGCATGT
50672447 CCCAAACATATCTTACACT
64 CCCAAACATATCTTACACT
50672466 GGCACACAAA
Statistics
Matches: 73, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
94 71 0.97
95 2 0.03
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (94 bp):
AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATATCGAGGCCAATGCATGTCC
CAAACATATCTTACACTAGCTCCCGTCTC
Found at i:50682627 original size:20 final size:22
Alignment explanation
Indices: 50682609--50682651 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
50682599 TCACCAATAT
*
50682609 CGCAGCATAGCTGCTAATAGTAA
1 CGCAGCAAAGCTGCTAATAGT-A
50682632 CGCAGCAAAGCTGCTAATAG
1 CGCAGCAAAGCTGCTAATAG
50682652 CGATAAACGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.19
Consensus pattern (22 bp):
CGCAGCAAAGCTGCTAATAGTA
Found at i:50688595 original size:17 final size:17
Alignment explanation
Indices: 50688569--50688605 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
50688559 ATGATGCTCA
*
50688569 TTAAACCTTTATTTTAT
1 TTAAAACTTTATTTTAT
50688586 TTAAAACTTTATTTTAT
1 TTAAAACTTTATTTTAT
50688603 TTA
1 TTA
50688606 TGCTTCTTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.59
Consensus pattern (17 bp):
TTAAAACTTTATTTTAT
Found at i:50695534 original size:12 final size:12
Alignment explanation
Indices: 50695519--50695556 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
50695509 AAAAAAATAA
*
50695519 AAAAAGAGAGAG
1 AAAAAGAGAAAG
*
50695531 AAAAAGAAAAAG
1 AAAAAGAGAAAG
50695543 AAAAA-AGAAAG
1 AAAAAGAGAAAG
50695554 AAA
1 AAA
50695557 CGATTCTAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
11 8 0.35
12 15 0.65
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (12 bp):
AAAAAGAGAAAG
Found at i:50695570 original size:6 final size:6
Alignment explanation
Indices: 50695559--50695614 Score: 103
Period size: 6 Copynumber: 9.2 Consensus size: 6
50695549 GAAAGAAACG
50695559 ATTCTA ATTCTA ATTCTA ATTCTA ATTCTA ATTCTA ATTCTA ATTCTA
1 ATTCTA ATTCTA ATTCTA ATTCTA ATTCTA ATTCTA ATTCTA ATTCTA
50695607 ATTTCTA A
1 A-TTCTA A
50695615 AGGTAAAGGA
Statistics
Matches: 49, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
6 43 0.88
7 6 0.12
ACGTcount: A:0.34, C:0.16, G:0.00, T:0.50
Consensus pattern (6 bp):
ATTCTA
Found at i:50696213 original size:29 final size:30
Alignment explanation
Indices: 50696170--50696228 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 30
50696160 TAATTGGATC
* *
50696170 AAATCTAAATTTCATGTATAA-AATTGCACA
1 AAATCTAAAGTTCATATA-AACAATTGCACA
50696200 AAATC-AAAGTTCATATAAACAATTGCACA
1 AAATCTAAAGTTCATATAAACAATTGCACA
50696229 TTAAACCATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 2 0.08
29 19 0.73
30 5 0.19
ACGTcount: A:0.49, C:0.15, G:0.07, T:0.29
Consensus pattern (30 bp):
AAATCTAAAGTTCATATAAACAATTGCACA
Found at i:50696701 original size:12 final size:12
Alignment explanation
Indices: 50696669--50696704 Score: 63
Period size: 13 Copynumber: 2.9 Consensus size: 12
50696659 AAAATGTATT
50696669 TTTTTTTAATAA
1 TTTTTTTAATAA
50696681 TTTTATTTAATAA
1 TTTT-TTTAATAA
50696694 TTTTTTTAATA
1 TTTTTTTAATA
50696705 TCTAATGACT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 11 0.48
13 12 0.52
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
TTTTTTTAATAA
Found at i:50697399 original size:18 final size:18
Alignment explanation
Indices: 50697356--50697399 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
50697346 CAACCGATTT
* *
50697356 AATTAATTTGATTGGTTC
1 AATTAATTTGACTGGTAC
*
50697374 AATCAATTTGACTGGTAC
1 AATTAATTTGACTGGTAC
*
50697392 GATTAATT
1 AATTAATT
50697400 CTACCAATCC
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.32, C:0.09, G:0.16, T:0.43
Consensus pattern (18 bp):
AATTAATTTGACTGGTAC
Found at i:50700277 original size:37 final size:37
Alignment explanation
Indices: 50700218--50700356 Score: 233
Period size: 37 Copynumber: 3.8 Consensus size: 37
50700208 AGCTCAGACG
* *
50700218 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
50700255 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGGCA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
50700292 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
50700329 TACTCTCCACACGTAGTCATCGGGTCTT
1 AAATCTCCACACGTAGTCATCGGGTCTT
50700357 TAGAGCTCGG
Statistics
Matches: 96, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 96 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:50700553 original size:47 final size:47
Alignment explanation
Indices: 50700475--50700793 Score: 521
Period size: 47 Copynumber: 6.7 Consensus size: 47
50700465 CCCTTCGGGA
* * * * * *
50700475 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50700522 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50700569 CTTATCACATATATACACTTTCACATTCATCACATCGGTCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50700616 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50700663 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50700712 CTTATCACATATATACACTTTCACATTCATCAAATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50700759 CTTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
50700794 AGAATCCTAA
Statistics
Matches: 254, Mismatches: 16, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
47 208 0.82
49 46 0.18
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:50700731 original size:143 final size:141
Alignment explanation
Indices: 50700475--50700793 Score: 521
Period size: 143 Copynumber: 2.2 Consensus size: 141
50700465 CCCTTCGGGA
* * * * * *
50700475 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCCTATCACATATATACAC
*
50700540 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAAATC
*
50700605 GGTCATTAGGC
131 GGCCATTAGGC
* *
50700616 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCCTATCAC--ATATATAC
*
50700681 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCAAA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAAA
50700746 TCGGCCATTAGGC
129 TCGGCCATTAGGC
50700759 CTTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
50700794 AGAATCCTAA
Statistics
Matches: 165, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
141 47 0.28
143 118 0.72
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAAATC
GGCCATTAGGC
Found at i:50700833 original size:96 final size:90
Alignment explanation
Indices: 50700535--50700814 Score: 307
Period size: 96 Copynumber: 3.0 Consensus size: 90
50700525 GTCACATATA
50700535 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATC
1 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATC
* * * *
50700600 ACATCGGTCATTAGGCCTTATCACATAT-A-
66 ACAT-AG--A--A-TCCTAATCAAATATAAT
50700629 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCA
1 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCA
* * * *
50700694 TCACATCGGCTATTAGGCCTTATCACATAT-A-
64 TCACAT-AG--A--A-TCCTAATCAAATATAAT
*
50700725 TACACTTTCACATTCATCAAATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATC
1 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATC
50700790 ACATAGAATCCTAAATCAAAATATA
66 ACATAGAATCCT-AATC-AAATATA
50700815 GATTTTCATG
Statistics
Matches: 174, Mismatches: 7, Indels: 13
0.90 0.04 0.07
Matches are distributed among these distances:
88 3 0.02
89 4 0.02
90 5 0.03
91 1 0.01
93 1 0.01
94 69 0.40
96 91 0.52
ACGTcount: A:0.33, C:0.28, G:0.07, T:0.33
Consensus pattern (90 bp):
TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATC
ACATAGAATCCTAATCAAATATAAT
Found at i:50702718 original size:56 final size:56
Alignment explanation
Indices: 50702651--50702770 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
50702641 TATTAGTTTA
50702651 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
50702707 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
50702763 TTGCCCAT
1 TTGCCCAT
50702771 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:50705402 original size:13 final size:13
Alignment explanation
Indices: 50705384--50705419 Score: 72
Period size: 13 Copynumber: 2.8 Consensus size: 13
50705374 GAAGAAATTG
50705384 AAGTCACACGGCC
1 AAGTCACACGGCC
50705397 AAGTCACACGGCC
1 AAGTCACACGGCC
50705410 AAGTCACACG
1 AAGTCACACG
50705420 CCCGTGTGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.33, C:0.36, G:0.22, T:0.08
Consensus pattern (13 bp):
AAGTCACACGGCC
Found at i:50708318 original size:5 final size:5
Alignment explanation
Indices: 50708308--50708336 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
50708298 GATACCAACC
50708308 ATAAA ATAAA ATAAA ATAAA ATAAA ATAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAA
50708337 TTTTTTTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
ATAAA
Found at i:50715395 original size:20 final size:20
Alignment explanation
Indices: 50715353--50715395 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
50715343 TTATCTATGA
*
50715353 ATAAATTTTAATTTTCTACC
1 ATAAATTTTAATTTTCTAAC
50715373 ATAAATTTCTAATTTT-TAAC
1 ATAAATTT-TAATTTTCTAAC
50715393 ATA
1 ATA
50715396 TTAATTCATG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 14 0.67
21 7 0.33
ACGTcount: A:0.40, C:0.12, G:0.00, T:0.49
Consensus pattern (20 bp):
ATAAATTTTAATTTTCTAAC
Found at i:50732373 original size:53 final size:53
Alignment explanation
Indices: 50732293--50732401 Score: 218
Period size: 53 Copynumber: 2.1 Consensus size: 53
50732283 TAATCCAAGT
50732293 AAGATTTCGGCAATTGTTGAATAGAAACCACCAAGAAATGTATCTAAAGTTAG
1 AAGATTTCGGCAATTGTTGAATAGAAACCACCAAGAAATGTATCTAAAGTTAG
50732346 AAGATTTCGGCAATTGTTGAATAGAAACCACCAAGAAATGTATCTAAAGTTAG
1 AAGATTTCGGCAATTGTTGAATAGAAACCACCAAGAAATGTATCTAAAGTTAG
50732399 AAG
1 AAG
50732402 CTTTTTGAGT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 56 1.00
ACGTcount: A:0.42, C:0.13, G:0.19, T:0.26
Consensus pattern (53 bp):
AAGATTTCGGCAATTGTTGAATAGAAACCACCAAGAAATGTATCTAAAGTTAG
Found at i:50740500 original size:19 final size:19
Alignment explanation
Indices: 50740476--50740515 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
50740466 TTTTTCCAGA
50740476 TTCCACTCAAGTACTGCTT
1 TTCCACTCAAGTACTGCTT
50740495 TTCCACTCAAGTACTGCTT
1 TTCCACTCAAGTACTGCTT
50740514 TT
1 TT
50740516 ACCTAGATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.20, C:0.30, G:0.10, T:0.40
Consensus pattern (19 bp):
TTCCACTCAAGTACTGCTT
Found at i:50744241 original size:43 final size:42
Alignment explanation
Indices: 50744202--50744339 Score: 129
Period size: 43 Copynumber: 3.2 Consensus size: 42
50744192 TCTTACATGT
* *
50744202 AATCAAATATCGATGCCACTGTCTTAGACAGGGTTTTACACAA
1 AATCAAATAT-GATGCCAATGTCCTAGACAGGGTTTTACACAA
* *
50744245 AATCATATATGATGCCAATGTCCTAGACATGG-TTTACACATA
1 AATCAAATATGATGCCAATGTCCTAGACAGGGTTTTACACA-A
** * *
50744287 AATCTCAAAT-TGATGCCAACATCCTAGAC-GTGGTCTTACACGA
1 AA--TCAAATATGATGCCAATGTCCTAGACAG-GGTTTTACACAA
*
50744330 AATCACATAT
1 AATCAAATAT
50744340 CTGAATCCTG
Statistics
Matches: 78, Mismatches: 11, Indels: 13
0.76 0.11 0.13
Matches are distributed among these distances:
41 13 0.17
42 23 0.29
43 31 0.40
44 11 0.14
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.28
Consensus pattern (42 bp):
AATCAAATATGATGCCAATGTCCTAGACAGGGTTTTACACAA
Found at i:50747055 original size:20 final size:19
Alignment explanation
Indices: 50747032--50747127 Score: 86
Period size: 20 Copynumber: 4.8 Consensus size: 19
50747022 TGTAGATAGA
*
50747032 GGCACAAATGTGCAAACAGG
1 GGCACAAA-GTGCAAACAAG
**
50747052 GGCACCGTAGTGCAAACAAG
1 GGCA-CAAAGTGCAAACAAG
* *
50747072 GACACCAAAGTGCATACAAG
1 GGCA-CAAAGTGCAAACAAG
50747092 GGCACCAAAGTGCAAAC-AG
1 GGCA-CAAAGTGCAAACAAG
50747111 AGGCACTAAAGTGCAAA
1 -GGCAC-AAAGTGCAAA
50747128 TCTCGTACAA
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
19 3 0.05
20 59 0.92
21 2 0.03
ACGTcount: A:0.42, C:0.23, G:0.26, T:0.09
Consensus pattern (19 bp):
GGCACAAAGTGCAAACAAG
Found at i:50747085 original size:40 final size:40
Alignment explanation
Indices: 50747029--50747127 Score: 121
Period size: 40 Copynumber: 2.5 Consensus size: 40
50747019 AAGTGTAGAT
* **
50747029 AGAGGCA-CAAATGTGCAAACAGGGGCACCGTAGTGCAAAC
1 AGAGGCACCAAA-GTGCAAACAAGGGCACCAAAGTGCAAAC
*
50747069 A-AGGACACCAAAGTGCATACAAGGGCACCAAAGTGCAAAC
1 AGAGG-CACCAAAGTGCAAACAAGGGCACCAAAGTGCAAAC
*
50747109 AGAGGCACTAAAGTGCAAA
1 AGAGGCACCAAAGTGCAAA
50747128 TCTCGTACAA
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
39 3 0.06
40 40 0.80
41 7 0.14
ACGTcount: A:0.42, C:0.22, G:0.26, T:0.09
Consensus pattern (40 bp):
AGAGGCACCAAAGTGCAAACAAGGGCACCAAAGTGCAAAC
Found at i:50752539 original size:37 final size:38
Alignment explanation
Indices: 50752411--50752598 Score: 168
Period size: 38 Copynumber: 5.0 Consensus size: 38
50752401 AAAATTGAAT
** *
50752411 ACTGATTATACCAAATGTTGCTCAAAGGAGCAATATCA
1 ACTGATTATACTGAATGTTGCTCAAACGAGCAATATCA
* * *
50752449 ACTGATTATACGGAATGTTGCTCAAACAAGTAATATCA
1 ACTGATTATACTGAATGTTGCTCAAACGAGCAATATCA
* * * *
50752487 ACTAATTATATTGAATG-TGCTCCAAA-GAGCAATGTCT
1 ACTGATTATACTGAATGTTGCT-CAAACGAGCAATATCA
*
50752524 ACTGATTAAACTGAATG-TGCTCAAACGAGCAATAATC-
1 ACTGATTATACTGAATGTTGCTCAAACGAGCAAT-ATCA
** * * * *
50752561 ACAAATTATTCTAAATGTTTACTCAAACGAGCATTATC
1 ACTGATTATACTGAATG-TTGCTCAAACGAGCAATATC
50752599 CACTAATCAT
Statistics
Matches: 122, Mismatches: 23, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
36 4 0.03
37 48 0.39
38 56 0.46
39 14 0.11
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (38 bp):
ACTGATTATACTGAATGTTGCTCAAACGAGCAATATCA
Found at i:50754098 original size:39 final size:39
Alignment explanation
Indices: 50754029--50754282 Score: 217
Period size: 39 Copynumber: 6.5 Consensus size: 39
50754019 CAGATAACTG
* * * *
50754029 TTGTACTTCGGTAACACTGA-TCGCAGTTATGTGCCCCTA
1 TTGTACTTCGGTACCCCTGACT-GCACTTACGTGCCCCTA
** * * *
50754068 TTGTACTTCGGTACTGCTGACTGCACTTATGTGCCGCTG
1 TTGTACTTCGGTACCCCTGACTGCACTTACGTGCCCCTA
* * * *
50754107 TTGTACTTTGGTACTCCTCATTGCACTTACGTGCCCCTA
1 TTGTACTTCGGTACCCCTGACTGCACTTACGTGCCCCTA
* * * * *
50754146 TTGTACTTTGGTACCCCTGGCAGCACTTACGTGCCCTTG
1 TTGTACTTCGGTACCCCTGACTGCACTTACGTGCCCCTA
** * * *
50754185 TAATACTTCGATACCCCTGA-TCGCACTTATGTTG-CCCTG
1 TTGTACTTCGGTACCCCTGACT-GCACTTACG-TGCCCCTA
* *
50754224 TTGTACTTCAGTACCCCTGACTGCACTTGCGTGCCCCTA
1 TTGTACTTCGGTACCCCTGACTGCACTTACGTGCCCCTA
* *
50754263 TTGTACTTCGATACTCCTGA
1 TTGTACTTCGGTACCCCTGA
50754283 TACCACTTTC
Statistics
Matches: 172, Mismatches: 38, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
38 2 0.01
39 166 0.97
40 4 0.02
ACGTcount: A:0.17, C:0.30, G:0.19, T:0.35
Consensus pattern (39 bp):
TTGTACTTCGGTACCCCTGACTGCACTTACGTGCCCCTA
Found at i:50754162 original size:19 final size:20
Alignment explanation
Indices: 50754107--50754163 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 20
50754097 TGTGCCGCTG
*
50754107 TTGTACTTTGGTACTCCTCA
1 TTGTACTTTGGTACCCCTCA
* ** *
50754127 TTGCACTTACGTGCCCCT-A
1 TTGTACTTTGGTACCCCTCA
50754146 TTGTACTTTGGTACCCCT
1 TTGTACTTTGGTACCCCT
50754164 GGCAGCACTT
Statistics
Matches: 28, Mismatches: 9, Indels: 1
0.74 0.24 0.03
Matches are distributed among these distances:
19 15 0.54
20 13 0.46
ACGTcount: A:0.14, C:0.30, G:0.16, T:0.40
Consensus pattern (20 bp):
TTGTACTTTGGTACCCCTCA
Found at i:50754270 original size:78 final size:78
Alignment explanation
Indices: 50754026--50754283 Score: 275
Period size: 78 Copynumber: 3.3 Consensus size: 78
50754016 TAGCAGATAA
* * * * **
50754026 CTGTTGTACTTCGGTAACACTGATCGCAGTTATGTGCCCCTATTGTACTTCGGTACTGCTGACTG
1 CTGTTGTACTTCGATACCCCTGATCGCACTTATGTGCCCCTATTGTACTTCGGTACCCCTGACTG
* *
50754091 CACTTATGTGCCG
66 CACTTACGTGCCC
* * * * * * * * *
50754104 CTGTTGTACTTTGGTACTCCTCATTGCACTTACGTGCCCCTATTGTACTTTGGTACCCCTGGCAG
1 CTGTTGTACTTCGATACCCCTGATCGCACTTATGTGCCCCTATTGTACTTCGGTACCCCTGACTG
50754169 CACTTACGTGCCC
66 CACTTACGTGCCC
* ** * *
50754182 TTGTAATACTTCGATACCCCTGATCGCACTTATGTTG-CCCTGTTGTACTTCAGTACCCCTGACT
1 CTGTTGTACTTCGATACCCCTGATCGCACTTATG-TGCCCCTATTGTACTTCGGTACCCCTGACT
*
50754246 GCACTTGCGTGCCC
65 GCACTTACGTGCCC
* *
50754260 CTATTGTACTTCGATACTCCTGAT
1 CTGTTGTACTTCGATACCCCTGAT
50754284 ACCACTTTCG
Statistics
Matches: 144, Mismatches: 35, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
78 142 0.99
79 2 0.01
ACGTcount: A:0.16, C:0.29, G:0.19, T:0.35
Consensus pattern (78 bp):
CTGTTGTACTTCGATACCCCTGATCGCACTTATGTGCCCCTATTGTACTTCGGTACCCCTGACTG
CACTTACGTGCCC
Found at i:50756602 original size:42 final size:43
Alignment explanation
Indices: 50756539--50756633 Score: 122
Period size: 42 Copynumber: 2.2 Consensus size: 43
50756529 TGAGATTTAT
* * *
50756539 GTGTAAGACCATGTCTGGGACATTGGCATCG-T-GTATGATTTC
1 GTGTAAGACCATGTCTAGGACAGTGGCATCGATAGT-TGATTAC
*
50756581 GTGTAAGACCCTGTCTAGGACAGTGGCATCGATAGTTGATTAC
1 GTGTAAGACCATGTCTAGGACAGTGGCATCGATAGTTGATTAC
*
50756624 ATGTAAGACC
1 GTGTAAGACC
50756634 TCATCTGGGA
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
42 28 0.61
43 16 0.35
44 2 0.04
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (43 bp):
GTGTAAGACCATGTCTAGGACAGTGGCATCGATAGTTGATTAC
Found at i:50761756 original size:42 final size:41
Alignment explanation
Indices: 50761650--50761769 Score: 118
Period size: 43 Copynumber: 2.8 Consensus size: 41
50761640 ATCTGAGACA
* *
50761650 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATT
1 TCGTGTAAGACCATGTCTGGGACAC-GGCATCGATTGAGATT
* *
50761692 TACGTATAAGACCATGTTTGGGACATCGGCATCGTATCT-A-ATT
1 T-CGTGTAAGACCATGTCTGGGACA-CGGCATCG-AT-TGAGATT
* *
50761735 TCGTGTAAGACCCTGTCTGGGACAGAGGCATCGAT
1 TCGTGTAAGACCATGTCTGGGACA-CGGCATCGAT
50761770 ATTGAATTAC
Statistics
Matches: 65, Mismatches: 9, Indels: 9
0.78 0.11 0.11
Matches are distributed among these distances:
41 2 0.03
42 28 0.43
43 30 0.46
44 4 0.06
45 1 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (41 bp):
TCGTGTAAGACCATGTCTGGGACACGGCATCGATTGAGATT
Found at i:50773304 original size:40 final size:40
Alignment explanation
Indices: 50773237--50773413 Score: 225
Period size: 40 Copynumber: 4.5 Consensus size: 40
50773227 ACCCAAGTAT
*
50773237 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
50773276 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * * *
50773316 CTTCGGGTTTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * *
50773356 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
50773396 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
50773414 TTATCATCCG
Statistics
Matches: 118, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.11
40 102 0.86
41 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:50773370 original size:80 final size:79
Alignment explanation
Indices: 50773237--50773401 Score: 251
Period size: 80 Copynumber: 2.1 Consensus size: 79
50773227 ACCCAAGTAT
* * *
50773237 CTTCGGGATTTAGCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCA
1 CTTCGGGATTTAGCCGGATATAACAACTAGCACAAATGCCTTCGGGACATAGCCCGGATATAGCA
50773302 ACTCGCACAAATGC
66 ACTCGCACAAATGC
* *
50773316 CTTCGGGTTTTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAG
1 CTTCGGGATTTAG-CCGGATATAA-CAACTAGCACAAATGCCTTCGGGACATAGCCCGGATATAG
*
50773380 CAACTCGCACGAATGC
64 CAACTCGCACAAATGC
50773396 CTTCGG
1 CTTCGG
50773402 ATCTTAGTCC
Statistics
Matches: 78, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
79 12 0.15
80 65 0.83
81 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (79 bp):
CTTCGGGATTTAGCCGGATATAACAACTAGCACAAATGCCTTCGGGACATAGCCCGGATATAGCA
ACTCGCACAAATGC
Found at i:50774044 original size:50 final size:50
Alignment explanation
Indices: 50773912--50774086 Score: 208
Period size: 50 Copynumber: 3.5 Consensus size: 50
50773902 TTGGTAAGCA
**
50773912 TAGTAGCCTGCACTTAGTACTACACATATGACC-AACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACG
* *
50773961 TAGTAGCCTGCACTTAGTACTACAAATGCGACCTAACTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACG
* * * * *** *
50774011 TAGTAGACTGCACTTAGTACTACACACGGGACCTAAAACCATCTTAAACACT
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCT--AACAATCTGGTACACG
*
50774063 TAGTAGCCTGCACATAGTACTACA
1 TAGTAGCCTGCACTTAGTACTACA
50774087 TATGTGTTCT
Statistics
Matches: 108, Mismatches: 15, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
49 30 0.28
50 45 0.42
52 33 0.31
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACG
Found at i:50777234 original size:68 final size:64
Alignment explanation
Indices: 50777148--50777369 Score: 223
Period size: 67 Copynumber: 3.4 Consensus size: 64
50777138 TAATACGGGA
* *
50777148 TGTATACCATGTGTACAAGAGAGCTACGAGACATTATGAGGTAGCTAGGTCGCATGGGTGATACA
1 TGTACACCATGTGTACAAGAGAGCTACGAG--A-TA-GAAGTAGCTAGGTCGCATGGGTGATACA
50777213 ATG
62 ATG
* * * * * *
50777216 TGTACACCATGTAG-ACAAGAGAGCTACGAGATAGATGTAGCTAGGTTGCATGTGTGGTTCCAGG
1 TGTACACCATGT-GTACAAGAGAGCTACGAGATAGAAGTAGCTAGGTCGCATGGGT-GATACA-A
50777280 TG
63 TG
* * ** * * *
50777282 AAGGACACCATGTAAACAAGAGAGCTACGAGATA-AAGTGGCTAGGTCACATGGGTGATACTATG
1 -TGTACACCATGTGTACAAGAGAGCTACGAGATAGAAGTAGCTAGGTCGCATGGGTGATACAATG
50777346 TGTACACCATGTGTACAAGAGAGC
1 TGTACACCATGTGTACAAGAGAGC
50777370 CAAAATTATG
Statistics
Matches: 126, Mismatches: 23, Indels: 15
0.77 0.14 0.09
Matches are distributed among these distances:
63 20 0.16
64 21 0.17
65 9 0.07
66 19 0.15
67 29 0.23
68 27 0.21
69 1 0.01
ACGTcount: A:0.32, C:0.16, G:0.29, T:0.23
Consensus pattern (64 bp):
TGTACACCATGTGTACAAGAGAGCTACGAGATAGAAGTAGCTAGGTCGCATGGGTGATACAATG
Found at i:50781465 original size:42 final size:42
Alignment explanation
Indices: 50781355--50781509 Score: 168
Period size: 42 Copynumber: 3.7 Consensus size: 42
50781345 TACCACACCA
* * * * ** * *
50781355 ATGTCAGATCCCAAATATGGTCTTATATGGGATCTCGTTTCG
1 ATGTCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* * *
50781397 ATGCCAATAGCCCAGCTATGGTCTTACACGAAATCTCATATCG
1 ATGTC-ATATCCCAGATATGGTCTTACACGAAATCTCATATCG
50781440 ATGTCATATCCCAGATATGGTCTTACACGAAATCTCATAAT-G
1 ATGTCATATCCCAGATATGGTCTTACACGAAATCTCAT-ATCG
* *
50781482 ATGACGTATCCCAGATATGGTCTTACAC
1 ATGTCATATCCCAGATATGGTCTTACAC
50781510 AATCTTGGTG
Statistics
Matches: 95, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
42 62 0.65
43 33 0.35
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.30
Consensus pattern (42 bp):
ATGTCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
Found at i:50788697 original size:44 final size:44
Alignment explanation
Indices: 50788629--50788789 Score: 241
Period size: 44 Copynumber: 3.5 Consensus size: 44
50788619 TTTGAATACT
* *
50788629 TCTGATCAGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTA
1 TCTGATCAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTA
50788673 TCTGATCAGCGATAAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGAT---C----AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTA
50788724 TCTGATCAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTA
50788768 TCTGATCAGTGACAAGTGATAA
1 TCTGATCAGTGACAAGTGATAA
50788790 ATGTGATCAG
Statistics
Matches: 108, Mismatches: 2, Indels: 14
0.87 0.02 0.11
Matches are distributed among these distances:
44 65 0.60
47 1 0.01
48 1 0.01
51 41 0.38
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (44 bp):
TCTGATCAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTA
Found at i:50788717 original size:51 final size:50
Alignment explanation
Indices: 50788636--50788786 Score: 215
Period size: 51 Copynumber: 3.1 Consensus size: 50
50788626 ACTTCTGATC
* *
50788636 AGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAGCGATA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGCGA-A
50788687 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGAT---C---
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGCGAA
*
50788731 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGCGA-A
50788782 AGTGA
1 AGTGA
50788787 TAAATGTGAT
Statistics
Matches: 90, Mismatches: 3, Indels: 14
0.84 0.03 0.13
Matches are distributed among these distances:
44 43 0.48
48 1 0.01
51 46 0.51
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (50 bp):
AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGCGAA
Found at i:50790081 original size:42 final size:41
Alignment explanation
Indices: 50789971--50790125 Score: 166
Period size: 42 Copynumber: 3.7 Consensus size: 41
50789961 TATCACACCA
* * ** * *
50789971 ATGCCATATCCCAGATATGGTCTTATATGGGATCTCGTTTTG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTC-ATATG
* * *
50790013 ATGCTAATAGCCCAGCTATGGTCTTACACGAAATCTCATATCG
1 ATGC-CATATCCCAGATATGGTCTTACACGAAATCTCATAT-G
* *
50790056 ATGCCATATCCCAGATATGGTCTTACACAAAATCTTATAATG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCAT-ATG
*
50790098 ATGCCGTATCCCAGATATGGTCTTACAC
1 ATGCCATATCCCAGATATGGTCTTACAC
50790126 ATAGTCTCGG
Statistics
Matches: 95, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
42 63 0.66
43 32 0.34
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATG
Found at i:50791450 original size:17 final size:17
Alignment explanation
Indices: 50791428--50791519 Score: 52
Period size: 17 Copynumber: 5.4 Consensus size: 17
50791418 ATTTTAATAT
50791428 TTTAATATTAAATTTAA
1 TTTAATATTAAATTTAA
50791445 TTTAATACTT--ATCTTAA
1 TTTAATA-TTAAAT-TTAA
** *
50791462 --TAATATTTTA-TTCA
1 TTTAATATTAAATTTAA
*
50791476 CTTAATATTAAAGTGATT-A
1 TTTAATATTAAA-T--TTAA
50791495 TCTTAATATTAAATTTAA
1 T-TTAATATTAAATTTAA
50791513 TTTAATA
1 TTTAATA
50791520 GCCCTTAGGT
Statistics
Matches: 59, Mismatches: 4, Indels: 24
0.68 0.05 0.28
Matches are distributed among these distances:
14 5 0.08
15 5 0.08
16 11 0.19
17 19 0.32
18 4 0.07
19 2 0.03
20 13 0.22
ACGTcount: A:0.41, C:0.05, G:0.02, T:0.51
Consensus pattern (17 bp):
TTTAATATTAAATTTAA
Found at i:50793262 original size:27 final size:27
Alignment explanation
Indices: 50793232--50793409 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
50793222 TTATTGAGCC
* * * *
50793232 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
50793259 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
50793286 CGCACACTTAGTGCCACATAGTCCATCT
1 CGCACACTTAGTGCTACATAGT-CAAAT
** * *
50793314 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
50793341 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
50793368 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
50793395 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
50793410 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:50793371 original size:82 final size:81
Alignment explanation
Indices: 50793253--50793408 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
50793243 TGCTATATAA
* * **
50793253 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCCACATAGTCCATCTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGT-CAAATCGCA
50793318 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
50793335 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
50793399 CACTTAGTGC
65 CACTTAGTGC
50793409 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:50801295 original size:27 final size:27
Alignment explanation
Indices: 50801265--50801442 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
50801255 TTATTGAGCC
* * * *
50801265 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
50801292 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
50801319 CGCACACTTAGTGCCACATAGTCCATCT
1 CGCACACTTAGTGCTACATAGT-CAAAT
** * *
50801347 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
50801374 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
50801401 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
50801428 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
50801443 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:50801404 original size:82 final size:81
Alignment explanation
Indices: 50801286--50801441 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
50801276 TGCTATATAA
* * **
50801286 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCCACATAGTCCATCTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGT-CAAATCGCA
50801351 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
50801368 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
50801432 CACTTAGTGC
65 CACTTAGTGC
50801442 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:50803799 original size:27 final size:27
Alignment explanation
Indices: 50803729--50803807 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 27
50803719 CGTACTCTCA
* * * *
50803729 TGTTTAACGTTCCATCGAACTATCCTG
1 TGTTTAACGTCCCGTCGGACTATCTTG
**
50803756 TGTTTAACGTCTTGTCGGACTATCTTG
1 TGTTTAACGTCCCGTCGGACTATCTTG
* *
50803783 TGTTTAACATCCCGTCGGGCTATCT
1 TGTTTAACGTCCCGTCGGACTATCT
50803808 ACGATGTCAT
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.18, C:0.24, G:0.19, T:0.39
Consensus pattern (27 bp):
TGTTTAACGTCCCGTCGGACTATCTTG
Found at i:50804406 original size:50 final size:50
Alignment explanation
Indices: 50804336--50804436 Score: 202
Period size: 50 Copynumber: 2.0 Consensus size: 50
50804326 TCATCCTATT
50804336 TCCCTTTCCTACCTTCCTCTAACCCTTTTTTAATCCCCTTTAAATTTTCC
1 TCCCTTTCCTACCTTCCTCTAACCCTTTTTTAATCCCCTTTAAATTTTCC
50804386 TCCCTTTCCTACCTTCCTCTAACCCTTTTTTAATCCCCTTTAAATTTTCC
1 TCCCTTTCCTACCTTCCTCTAACCCTTTTTTAATCCCCTTTAAATTTTCC
50804436 T
1 T
50804437 TTCTATCATG
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.16, C:0.38, G:0.00, T:0.47
Consensus pattern (50 bp):
TCCCTTTCCTACCTTCCTCTAACCCTTTTTTAATCCCCTTTAAATTTTCC
Found at i:50807928 original size:61 final size:58
Alignment explanation
Indices: 50807819--50807932 Score: 165
Period size: 61 Copynumber: 1.9 Consensus size: 58
50807809 ACTTTAATAA
** * *
50807819 TAAATTAATATTATATTTATTAAGATAAATATTAGATTAAATTTAATATTAAGTCTAT
1 TAAATTAATAGAATATTTATTAAGATAAATATTAAATTAAATTAAATATTAAGTCTAT
50807877 TAAATTAATAGAATATTTATCTACAAGATAAATATTAAATTAAATTAAATATTAAG
1 TAAATTAATAGAATATTTAT-T--AAGATAAATATTAAATTAAATTAAATATTAAG
50807933 ATAATCACTT
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
58 18 0.37
59 1 0.02
61 30 0.61
ACGTcount: A:0.50, C:0.03, G:0.05, T:0.42
Consensus pattern (58 bp):
TAAATTAATAGAATATTTATTAAGATAAATATTAAATTAAATTAAATATTAAGTCTAT
Found at i:50807971 original size:12 final size:12
Alignment explanation
Indices: 50807905--50807973 Score: 56
Period size: 12 Copynumber: 5.7 Consensus size: 12
50807895 ATCTACAAGA
50807905 TAAATATTAA-AT
1 TAAAT-TTAATAT
*
50807917 TAAATTAAATAT
1 TAAATTTAATAT
50807929 TAAGA--TAATCACT
1 TAA-ATTTAAT-A-T
50807942 TAAATATTAA-AT
1 TAAAT-TTAATAT
50807954 TAAATTTAATAT
1 TAAATTTAATAT
50807966 TAAATTTA
1 TAAATTTA
50807974 TTAAAATAAT
Statistics
Matches: 47, Mismatches: 2, Indels: 16
0.72 0.03 0.25
Matches are distributed among these distances:
11 10 0.21
12 28 0.60
13 6 0.13
15 3 0.06
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42
Consensus pattern (12 bp):
TAAATTTAATAT
Found at i:50807981 original size:17 final size:17
Alignment explanation
Indices: 50807905--50807971 Score: 82
Period size: 17 Copynumber: 3.8 Consensus size: 17
50807895 ATCTACAAGA
50807905 TAAATATTAAATTAAAT
1 TAAATATTAAATTAAAT
50807922 TAAATATTAAGA-TAATCACT
1 TAAATATTAA-ATTAA--A-T
50807942 TAAATATTAAATTAAAT
1 TAAATATTAAATTAAAT
*
50807959 TTAATATTAAATT
1 TAAATATTAAATT
50807972 TATTAAAATA
Statistics
Matches: 44, Mismatches: 1, Indels: 10
0.80 0.02 0.18
Matches are distributed among these distances:
17 26 0.59
18 2 0.05
19 2 0.05
20 14 0.32
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42
Consensus pattern (17 bp):
TAAATATTAAATTAAAT
Found at i:50809106 original size:21 final size:22
Alignment explanation
Indices: 50809060--50809113 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
50809050 TGTAGGGCTC
**
50809060 ACACACCCGTGTGGTCCAAGGG
1 ACACACCCGTGTGACCCAAGGG
*
50809082 ACACACCCGTGTGACCCTA-GG
1 ACACACCCGTGTGACCCAAGGG
*
50809103 ACACGCCCGTG
1 ACACACCCGTG
50809114 CTGCTGGCCG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
21 12 0.43
22 16 0.57
ACGTcount: A:0.22, C:0.37, G:0.28, T:0.13
Consensus pattern (22 bp):
ACACACCCGTGTGACCCAAGGG
Found at i:50814482 original size:23 final size:23
Alignment explanation
Indices: 50814455--50814510 Score: 94
Period size: 23 Copynumber: 2.4 Consensus size: 23
50814445 ATCACAAGTA
50814455 AATTAATTCACAAACAAAATCAG
1 AATTAATTCACAAACAAAATCAG
* *
50814478 AATTAATTCACTAACGAAATCAG
1 AATTAATTCACAAACAAAATCAG
50814501 AATTAATTCA
1 AATTAATTCA
50814511 ACTTGGGTCT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.52, C:0.16, G:0.05, T:0.27
Consensus pattern (23 bp):
AATTAATTCACAAACAAAATCAG
Found at i:50817809 original size:23 final size:23
Alignment explanation
Indices: 50817776--50817826 Score: 93
Period size: 23 Copynumber: 2.2 Consensus size: 23
50817766 TTGTGGGCAT
50817776 GTTATACGTGCCATATGAAAGCG
1 GTTATACGTGCCATATGAAAGCG
*
50817799 GTTATATGTGCCATATGAAAGCG
1 GTTATACGTGCCATATGAAAGCG
50817822 GTTAT
1 GTTAT
50817827 GTCGTTAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.31
Consensus pattern (23 bp):
GTTATACGTGCCATATGAAAGCG
Done.