Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 156 of 255
Found at i:50820118 original size:18 final size:19
Alignment explanation
Indices: 50820081--50820118 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
50820071 TGAGTACACG
*
50820081 ATAATGTTGAATTATGAAC
1 ATAATGTTGAATCATGAAC
*
50820100 ATAATG-TGAATCATTAAC
1 ATAATGTTGAATCATGAAC
50820118 A
1 A
50820119 AATCATTTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.34
Consensus pattern (19 bp):
ATAATGTTGAATCATGAAC
Found at i:50820993 original size:25 final size:24
Alignment explanation
Indices: 50820942--50820993 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 24
50820932 TTAGTTATAT
* * *
50820942 TAACATATTTTAATATTTATAGCA
1 TAACATATTTAAATATTTAAAGAA
*
50820966 TAACATATATTAAATATTTAAATAA
1 TAACATAT-TTAAATATTTAAAGAA
50820991 TAA
1 TAA
50820994 TACCTATTTG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
24 8 0.35
25 15 0.65
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (24 bp):
TAACATATTTAAATATTTAAAGAA
Found at i:50843832 original size:17 final size:16
Alignment explanation
Indices: 50843806--50843849 Score: 54
Period size: 17 Copynumber: 2.8 Consensus size: 16
50843796 ATTAACTTTT
* *
50843806 AATAAATTTATTATTA
1 AATAAATTTAATAATA
50843822 AATATAATTTAATAATA
1 AATA-AATTTAATAATA
50843839 AAT-AATTTAAT
1 AATAAATTTAAT
50843850 CATATTTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 8 0.32
16 4 0.16
17 13 0.52
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
AATAAATTTAATAATA
Found at i:50846771 original size:15 final size:16
Alignment explanation
Indices: 50846735--50846770 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
50846725 ATTTTGTTGC
*
50846735 AAAAGTTATAATTTAA
1 AAAAATTATAATTTAA
*
50846751 AAAAATTATAATTGAA
1 AAAAATTATAATTTAA
50846767 AAAA
1 AAAA
50846771 TAAAAATAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.31
Consensus pattern (16 bp):
AAAAATTATAATTTAA
Found at i:50863538 original size:40 final size:40
Alignment explanation
Indices: 50863494--50863763 Score: 292
Period size: 40 Copynumber: 6.8 Consensus size: 40
50863484 TATTTATCGA
* *
50863494 TGATTGCATATACGTGCCCCTGTTTGTACTTCGATACCTC
1 TGATTGCACATACGTGCCCCTGTTTGTACTTCGATACCCC
* * *
50863534 TGATTGCACATATGTGCCCCTGTTTGTGCTT-TAGTACCCC
1 TGATTGCACATACGTGCCCCTGTTTGTACTTCGA-TACCCC
* * *
50863574 TGATTGCACATACGTGCCCTTATTTGTACTTCGGTACCCC
1 TGATTGCACATACGTGCCCCTGTTTGTACTTCGATACCCC
* * * * *
50863614 TGATTTCACATATGTTCCCCTATTTGTACTTCGGTACCCC
1 TGATTGCACATACGTGCCCCTGTTTGTACTTCGATACCCC
* * * *
50863654 TAATTGCACATATGTGCCCCTG-TTGTACTTTGGTACCCC
1 TGATTGCACATACGTGCCCCTGTTTGTACTTCGATACCCC
* * *
50863693 TGATTGCACATTCGTGCCCATGTTTGTACTTCTATACCCC
1 TGATTGCACATACGTGCCCCTGTTTGTACTTCGATACCCC
* * * * *
50863733 TGAATGCACTTACATGCCCCTATTTATACTT
1 TGATTGCACATACGTGCCCCTGTTTGTACTT
50863764 TGGTAACCCT
Statistics
Matches: 193, Mismatches: 34, Indels: 6
0.83 0.15 0.03
Matches are distributed among these distances:
39 35 0.18
40 158 0.82
ACGTcount: A:0.18, C:0.29, G:0.16, T:0.37
Consensus pattern (40 bp):
TGATTGCACATACGTGCCCCTGTTTGTACTTCGATACCCC
Found at i:50863581 original size:80 final size:80
Alignment explanation
Indices: 50863494--50863773 Score: 323
Period size: 80 Copynumber: 3.5 Consensus size: 80
50863484 TATTTATCGA
* * * *
50863494 TGATTGCATATACGTGCCCCTGTTTGTACTTCGATACCTCTGATTGCACATATGTGCCCCTGTTT
1 TGATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCCTGATTGCACATATGTGCCCCTGTTT
*
50863559 GTGCTTTAGTACCCC
66 GTACTTTAGTACCCC
* * * *
50863574 TGATTGCACATACGTGCCCTTATTTGTACTTCGGTACCCCTGATTTCACATATGTTCCCCTATTT
1 TGATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCCTGATTGCACATATGTGCCCCTGTTT
**
50863639 GTACTTCGGTACCCC
66 GTACTTTAGTACCCC
* * * * *
50863654 TAATTGCACATATGTGCCCCT-GTTGTACTTTGGTACCCCTGATTGCACAT-TCGTGCCCATGTT
1 TGATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCCTGATTGCACATAT-GTGCCCCTGTT
50863717 TGTACTTCTA-TACCCC
65 TGTACTT-TAGTACCCC
* * * * * *
50863733 TGAATGCACTTACATGCCCCTATTTATACTTTGGTAACCCT
1 TGATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCCT
50863774 AAATCAAATA
Statistics
Matches: 167, Mismatches: 30, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
78 1 0.01
79 63 0.38
80 103 0.62
ACGTcount: A:0.18, C:0.29, G:0.16, T:0.37
Consensus pattern (80 bp):
TGATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCCTGATTGCACATATGTGCCCCTGTTT
GTACTTTAGTACCCC
Found at i:50863653 original size:20 final size:20
Alignment explanation
Indices: 50863594--50863655 Score: 63
Period size: 20 Copynumber: 3.1 Consensus size: 20
50863584 TACGTGCCCT
50863594 TATTTGTACTTCGGTACCCC
1 TATTTGTACTTCGGTACCCC
* * ** *
50863614 TGATTT-CACATATGTTCCCC
1 T-ATTTGTACTTCGGTACCCC
50863634 TATTTGTACTTCGGTACCCC
1 TATTTGTACTTCGGTACCCC
50863654 TA
1 TA
50863656 ATTGCACATA
Statistics
Matches: 30, Mismatches: 10, Indels: 4
0.68 0.23 0.09
Matches are distributed among these distances:
19 4 0.13
20 22 0.73
21 4 0.13
ACGTcount: A:0.18, C:0.29, G:0.13, T:0.40
Consensus pattern (20 bp):
TATTTGTACTTCGGTACCCC
Found at i:50867189 original size:40 final size:40
Alignment explanation
Indices: 50867145--50867224 Score: 106
Period size: 40 Copynumber: 2.0 Consensus size: 40
50867135 GGCTAAGAAC
***
50867145 GGCACTTAGTGTGTGGTTTGAAATAGCTTCGGCTAAATGT
1 GGCACTTAGTGTGCAATTTGAAATAGCTTCGGCTAAATGT
* * *
50867185 GGCACTTCGTGTGCAATTTGAGATAGCTTCGGCTATATGT
1 GGCACTTAGTGTGCAATTTGAAATAGCTTCGGCTAAATGT
50867225 ATATGTGGCA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.21, C:0.15, G:0.29, T:0.35
Consensus pattern (40 bp):
GGCACTTAGTGTGCAATTTGAAATAGCTTCGGCTAAATGT
Found at i:50867304 original size:28 final size:28
Alignment explanation
Indices: 50867234--50867304 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
50867224 TATATGTGGC
* *
50867234 ACTTAGTGTGCGAAATATTGAGAATGAC
1 ACTTAGTGTGCGAGATATTGAGAATGAA
* * *
50867262 ACTTGGTGTGTGAGATATTGAGTATGAA
1 ACTTAGTGTGCGAGATATTGAGAATGAA
50867290 ACTTAGTGTGCGAGA
1 ACTTAGTGTGCGAGA
50867305 CATCGAAGAT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.31, C:0.08, G:0.30, T:0.31
Consensus pattern (28 bp):
ACTTAGTGTGCGAGATATTGAGAATGAA
Found at i:50881997 original size:46 final size:47
Alignment explanation
Indices: 50881902--50882121 Score: 202
Period size: 47 Copynumber: 4.7 Consensus size: 47
50881892 TTTGTGAGCC
* * *
50881902 AGTGTAAGACCATGTCTGGGACATGACATTGGCATTGAGACA-AGAGCT
1 AGTGTAAGACCATGTCTGGGACATG-CATCGGCCTCGAGACATA-AGCT
* *
50881950 AGTGTAAGA-CATGTTTAGGACATGCATCGGCCTCGAGACATAAGCT
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGACATAAGCT
* * *
50881996 AGTGCAAGA-CTTGTCTGGGACATGCATCGG-CTACGAGATGAT-AG-T
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCT-CGAGA-CATAAGCT
* * * * * *
50882041 CAGTTTTAGACCATGTCTGGGACATGGCATC-GACTTGAGATATGAGCT
1 -AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGACATAAGCT
50882089 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGC
50882122 ACCTTACCCA
Statistics
Matches: 143, Mismatches: 19, Indels: 20
0.79 0.10 0.11
Matches are distributed among these distances:
45 3 0.02
46 58 0.41
47 64 0.45
48 18 0.13
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGACATAAGCT
Found at i:50885649 original size:79 final size:80
Alignment explanation
Indices: 50885546--50885715 Score: 220
Period size: 79 Copynumber: 2.1 Consensus size: 80
50885536 GGACTAAGAT
* *
50885546 CCGAAGGCATTTGTGCGAGATACTAATTCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACT
1 CCGAAGGCATTGGTGCGAGATACTAAATCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGATACT
*
50885610 A-ATTCCAGGCTAAG-C
65 ATA-ACCAGGCTAAGTC
* ** *
50885625 CCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTGGTGCGAGATACTAAATCCGGACTAAGTCCCGAAGGCATTTGTGCGAGATACTA
* *
50885690 TAACCGGGCTATGTC
66 TAACCAGGCTAAGTC
50885705 CCGAAGGCATT
1 CCGAAGGCATT
50885716 TGAACGAGTA
Statistics
Matches: 79, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
78 1 0.01
79 65 0.82
80 13 0.16
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGAAGGCATTGGTGCGAGATACTAAATCCGGACTAAGTCCCGAAGGCATTTGTGCGAGATACTA
TAACCAGGCTAAGTC
Found at i:50885724 original size:40 final size:40
Alignment explanation
Indices: 50885493--50885717 Score: 235
Period size: 40 Copynumber: 5.7 Consensus size: 40
50885483 TCGAATGATG
* * * ***
50885493 TCCGGGCTAAGTCCCAAAGGC-TTTGTGCTAAGTGACCGTA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
50885533 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
50885573 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
50885613 TCCAGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
50885652 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
50885693 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
50885718 AACGAGTAGC
Statistics
Matches: 161, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
39 33 0.20
40 118 0.73
41 10 0.06
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:50885739 original size:79 final size:79
Alignment explanation
Indices: 50885546--50885750 Score: 193
Period size: 79 Copynumber: 2.6 Consensus size: 79
50885536 GGACTAAGAT
* ** * * **
50885546 CCGAAGGCATTTGTGCGAGATACTAATTCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACT
1 CCGAAGGCATTGGAACGAGTTACTAAATCCGGGTTAA-ATCCCGAAGGCATTTGTGCGAGATACT
*
50885610 AATTCCAGGCTAAGC
65 AATACCAGGCTAAGC
** * *
50885625 CCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-
1 CCGAAGGCATTGGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGATACTA
* *
50885689 ATAACCGGGCTATGTC
66 AT-ACCAGGCTAAG-C
* * *
50885705 CCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTGGAACGAGTTA-CTAAATCCGGGTTAAATCCCGAAGG
50885751 TACGTGATTC
Statistics
Matches: 106, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
78 3 0.03
79 79 0.75
80 24 0.23
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTGGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGATACTA
ATACCAGGCTAAGC
Found at i:50895243 original size:16 final size:16
Alignment explanation
Indices: 50895222--50895256 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
50895212 CCTTCCTCTA
*
50895222 TATGATGAATTCCTGG
1 TATGATGAATGCCTGG
50895238 TATGATGAATGCCTGG
1 TATGATGAATGCCTGG
50895254 TAT
1 TAT
50895257 ACGGAGTTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.26, C:0.11, G:0.26, T:0.37
Consensus pattern (16 bp):
TATGATGAATGCCTGG
Found at i:50923189 original size:17 final size:17
Alignment explanation
Indices: 50923167--50923199 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
50923157 CTAAGTACAC
50923167 ATTGTCATTGCATTTTT
1 ATTGTCATTGCATTTTT
50923184 ATTGTCATTGCATTTT
1 ATTGTCATTGCATTTT
50923200 CATGTTAGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.18, C:0.12, G:0.12, T:0.58
Consensus pattern (17 bp):
ATTGTCATTGCATTTTT
Found at i:50924220 original size:177 final size:177
Alignment explanation
Indices: 50923924--50924278 Score: 665
Period size: 177 Copynumber: 2.0 Consensus size: 177
50923914 TTCATTCATT
*
50923924 GAGATTTTAGGTGATTCAAGTTGCTAGAATGCTTATTCGCCTTAGTGAATTTTTGTAGCCTTGCT
1 GAGATTTTAGGTGATTCAAGTTGCTAGAATGCTCATTCGCCTTAGTGAATTTTTGTAGCCTTGCT
50923989 AGTTTCTGTTTTACTTGAGGACAAGTAAAAACTCAAGTTTGGAGGTGTGATAGTACTAGAAAAAA
66 AGTTTCTGTTTTACTTGAGGACAAGTAAAAACTCAAGTTTGGAGGTGTGATAGTACTAGAAAAAA
** *
50924054 CATTTGTTCCCATTTAGTTATGGTTAGCACATATTTTAGCATTTTCA
131 CATTTGTTCCCATTTAGTTAAAGTTACCACATATTTTAGCATTTTCA
*
50924101 GAGATTTTAGGTGATTCAAGTTGCTAGAATGCTCATTTGCCTTAGTGAATTTTTGTAGCCTTGCT
1 GAGATTTTAGGTGATTCAAGTTGCTAGAATGCTCATTCGCCTTAGTGAATTTTTGTAGCCTTGCT
50924166 AGTTTCTGTTTTACTTGAGGACAAGTAAAAACTCAAGTTTGGAGGTGTGATAGTACTAGAAAAAA
66 AGTTTCTGTTTTACTTGAGGACAAGTAAAAACTCAAGTTTGGAGGTGTGATAGTACTAGAAAAAA
50924231 CATTTGTTCCCATTTAGTTAAAGTTACCACATATTTTAGCATTTTCA
131 CATTTGTTCCCATTTAGTTAAAGTTACCACATATTTTAGCATTTTCA
50924278 G
1 G
50924279 TTTAGTAAAT
Statistics
Matches: 173, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
177 173 1.00
ACGTcount: A:0.28, C:0.13, G:0.20, T:0.39
Consensus pattern (177 bp):
GAGATTTTAGGTGATTCAAGTTGCTAGAATGCTCATTCGCCTTAGTGAATTTTTGTAGCCTTGCT
AGTTTCTGTTTTACTTGAGGACAAGTAAAAACTCAAGTTTGGAGGTGTGATAGTACTAGAAAAAA
CATTTGTTCCCATTTAGTTAAAGTTACCACATATTTTAGCATTTTCA
Found at i:50930288 original size:38 final size:38
Alignment explanation
Indices: 50930228--50930313 Score: 95
Period size: 38 Copynumber: 2.3 Consensus size: 38
50930218 AATCCTTCTA
*
50930228 GGCACAAAGCCTGATTGACACATAGCCCAAATAAAA-C
1 GGCACAAAGCCTGATAGACACATAGCCCAAATAAAATC
* * * *
50930265 TGGCACAAAGCCT-ACTAGGCACATAGTCCGAATAACATC
1 -GGCACAAAGCCTGA-TAGACACATAGCCCAAATAAAATC
50930304 GGCACAAAGC
1 GGCACAAAGC
50930314 TTGTTAGGCA
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
37 1 0.02
38 39 0.95
39 1 0.02
ACGTcount: A:0.40, C:0.28, G:0.19, T:0.14
Consensus pattern (38 bp):
GGCACAAAGCCTGATAGACACATAGCCCAAATAAAATC
Found at i:50930322 original size:38 final size:38
Alignment explanation
Indices: 50930266--50930339 Score: 96
Period size: 38 Copynumber: 1.9 Consensus size: 38
50930256 AAATAAAACT
50930266 GGCACAAAGCCTACTAGGCACATAGTCC-GAATAACATC
1 GGCACAAAGCCTACTAGGCACATAG-CCTGAATAACATC
* ** *
50930304 GGCACAAAGCTTGTTAGGCATATAGCCTGAATAACA
1 GGCACAAAGCCTACTAGGCACATAGCCTGAATAACA
50930340 CCGTTTCTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
37 2 0.06
38 29 0.94
ACGTcount: A:0.36, C:0.24, G:0.20, T:0.19
Consensus pattern (38 bp):
GGCACAAAGCCTACTAGGCACATAGCCTGAATAACATC
Found at i:50934106 original size:20 final size:20
Alignment explanation
Indices: 50934081--50934146 Score: 62
Period size: 20 Copynumber: 3.3 Consensus size: 20
50934071 TACTTTGGTA
50934081 CCCCTGATTACACATACGTG
1 CCCCTGATTACACATACGTG
* * * *
50934101 CCCCTGTTTATAC-TCCGGTA
1 CCCCTGATTACACATAC-GTG
* *
50934121 CCCCTAATTACACATATGTG
1 CCCCTGATTACACATACGTG
50934141 CCCCTG
1 CCCCTG
50934147 TTTGTACTTT
Statistics
Matches: 33, Mismatches: 11, Indels: 4
0.69 0.23 0.08
Matches are distributed among these distances:
19 2 0.06
20 30 0.91
21 1 0.03
ACGTcount: A:0.21, C:0.36, G:0.14, T:0.29
Consensus pattern (20 bp):
CCCCTGATTACACATACGTG
Found at i:50934121 original size:40 final size:40
Alignment explanation
Indices: 50934045--50934168 Score: 176
Period size: 40 Copynumber: 3.1 Consensus size: 40
50934035 TATTTATCGA
* * *
50934045 TGATTGCACATATGTGCTCCTATTTGTACTTTGGTACCCC
1 TGATTACACATATGTGCCCCTGTTTGTACTTTGGTACCCC
* * **
50934085 TGATTACACATACGTGCCCCTGTTTATACTCCGGTACCCC
1 TGATTACACATATGTGCCCCTGTTTGTACTTTGGTACCCC
*
50934125 TAATTACACATATGTGCCCCTGTTTGTACTTTGGTACCCC
1 TGATTACACATATGTGCCCCTGTTTGTACTTTGGTACCCC
50934165 TGAT
1 TGAT
50934169 CAGGGATTTA
Statistics
Matches: 71, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 71 1.00
ACGTcount: A:0.19, C:0.28, G:0.16, T:0.36
Consensus pattern (40 bp):
TGATTACACATATGTGCCCCTGTTTGTACTTTGGTACCCC
Found at i:50934214 original size:17 final size:18
Alignment explanation
Indices: 50934184--50934229 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
50934174 ATTTAAATTG
50934184 CGGTCGCGGTCGCGTTTT
1 CGGTCGCGGTCGCGTTTT
50934202 CGGTCGC-GTCGCG-TTT
1 CGGTCGCGGTCGCGTTTT
50934218 --GTCGCGGTCGCG
1 CGGTCGCGGTCGCG
50934230 GACATAACGG
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 5 0.19
15 6 0.22
16 3 0.11
17 6 0.22
18 7 0.26
ACGTcount: A:0.00, C:0.30, G:0.41, T:0.28
Consensus pattern (18 bp):
CGGTCGCGGTCGCGTTTT
Found at i:50935424 original size:40 final size:40
Alignment explanation
Indices: 50935379--50935543 Score: 204
Period size: 40 Copynumber: 4.1 Consensus size: 40
50935369 TGAATCCCTG
* * *
50935379 CCCCTGATTGCACATGCGTGCCCTTATTTGTACTTTGGTA
1 CCCCTGATTGCACATACGTGCCCCTATTTGTACTTCGGTA
* *
50935419 CCCCTGATTGCACATACGTGCCCCTGTTTGTACTTCAGTA
1 CCCCTGATTGCACATACGTGCCCCTATTTGTACTTCGGTA
* * * * *
50935459 ACCCTGATTGTACATATGTGCCCCTATTAGTACTTTGGTA
1 CCCCTGATTGCACATACGTGCCCCTATTTGTACTTCGGTA
* * * *
50935499 CCCTTGATTGCACATTCGTGCCCATGTTTGTACTTCGGTA
1 CCCCTGATTGCACATACGTGCCCCTATTTGTACTTCGGTA
50935539 CCCCT
1 CCCCT
50935544 AAATGAACTT
Statistics
Matches: 103, Mismatches: 22, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 103 1.00
ACGTcount: A:0.17, C:0.29, G:0.18, T:0.36
Consensus pattern (40 bp):
CCCCTGATTGCACATACGTGCCCCTATTTGTACTTCGGTA
Found at i:50935444 original size:20 final size:20
Alignment explanation
Indices: 50935377--50935444 Score: 57
Period size: 20 Copynumber: 3.4 Consensus size: 20
50935367 TTTGAATCCC
*
50935377 TGCCCCTGATTGCACATGCG
1 TGCCCCTGATTGCACATACG
* * * **
50935397 TG-CCCTTATTTGTACTTTGG
1 TGCCCCTGA-TTGCACATACG
*
50935417 TACCCCTGATTGCACATACG
1 TGCCCCTGATTGCACATACG
50935437 TGCCCCTG
1 TGCCCCTG
50935445 TTTGTACTTC
Statistics
Matches: 34, Mismatches: 12, Indels: 4
0.68 0.24 0.08
Matches are distributed among these distances:
19 5 0.15
20 24 0.71
21 5 0.15
ACGTcount: A:0.15, C:0.32, G:0.21, T:0.32
Consensus pattern (20 bp):
TGCCCCTGATTGCACATACG
Found at i:50935483 original size:20 final size:19
Alignment explanation
Indices: 50935419--50935483 Score: 58
Period size: 20 Copynumber: 3.3 Consensus size: 19
50935409 TACTTTGGTA
*
50935419 CCCCTGATTGCACATACGTG
1 CCCCTGATTGTACATA-GTG
* * *
50935439 CCCCTGTTTGTACTTCAGTA
1 CCCCTGATTGTACAT-AGTG
*
50935459 ACCCTGATTGTACATATGTG
1 CCCCTGATTGTACATA-GTG
50935479 CCCCT
1 CCCCT
50935484 ATTAGTACTT
Statistics
Matches: 34, Mismatches: 9, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
19 1 0.03
20 32 0.94
21 1 0.03
ACGTcount: A:0.18, C:0.32, G:0.17, T:0.32
Consensus pattern (19 bp):
CCCCTGATTGTACATAGTG
Found at i:50935513 original size:80 final size:80
Alignment explanation
Indices: 50935380--50935543 Score: 238
Period size: 80 Copynumber: 2.0 Consensus size: 80
50935370 GAATCCCTGC
* * * *
50935380 CCCTGATTGCACATGCGTGCCCTTATTTGTACTTTGGTACCCCTGATTGCACATACGTGCCCCTG
1 CCCTGATTGCACATACGTGCCCCTATTAGTACTTTGGTACCCCTGATTGCACATACGTGCCCATG
50935445 TTTGTACTTCAGTAA
66 TTTGTACTTCAGTAA
* * * *
50935460 CCCTGATTGTACATATGTGCCCCTATTAGTACTTTGGTACCCTTGATTGCACATTCGTGCCCATG
1 CCCTGATTGCACATACGTGCCCCTATTAGTACTTTGGTACCCCTGATTGCACATACGTGCCCATG
* *
50935525 TTTGTACTTCGGTAC
66 TTTGTACTTCAGTAA
50935540 CCCT
1 CCCT
50935544 AAATGAACTT
Statistics
Matches: 74, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
80 74 1.00
ACGTcount: A:0.17, C:0.29, G:0.18, T:0.36
Consensus pattern (80 bp):
CCCTGATTGCACATACGTGCCCCTATTAGTACTTTGGTACCCCTGATTGCACATACGTGCCCATG
TTTGTACTTCAGTAA
Found at i:50935578 original size:80 final size:80
Alignment explanation
Indices: 50935397--50935563 Score: 217
Period size: 80 Copynumber: 2.1 Consensus size: 80
50935387 TGCACATGCG
* * *
50935397 TGCCCTTATTTGTACTTTGGTACCCCTGATTGCACATACGTGCCCCTGTTTGTACTTCAGTAACC
1 TGCCCCTATTAGTACTTTGGTACCCCTGATTGCACATACGTGCCCATGTTTGTACTTCAGTAACC
* * * **
50935462 CTGATTGTACATATG
66 CTAAATGAACATACA
* * * *
50935477 TGCCCCTATTAGTACTTTGGTACCCTTGATTGCACATTCGTGCCCATGTTTGTACTTCGGTACCC
1 TGCCCCTATTAGTACTTTGGTACCCCTGATTGCACATACGTGCCCATGTTTGTACTTCAGTAACC
*
50935542 CTAAATGAACTTACA
66 CTAAATGAACATACA
50935557 TGCCCCT
1 TGCCCCT
50935564 GGTTATACTC
Statistics
Matches: 74, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
80 74 1.00
ACGTcount: A:0.19, C:0.28, G:0.17, T:0.36
Consensus pattern (80 bp):
TGCCCCTATTAGTACTTTGGTACCCCTGATTGCACATACGTGCCCATGTTTGTACTTCAGTAACC
CTAAATGAACATACA
Found at i:50946275 original size:16 final size:17
Alignment explanation
Indices: 50946254--50946292 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
50946244 TGAATTACTG
*
50946254 ATTACAGT-TCTATTCT
1 ATTACAGTATCTATTCC
50946270 ATTACA-TATCTATTCC
1 ATTACAGTATCTATTCC
50946286 ATTACAG
1 ATTACAG
50946293 CCCTATTTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 1 0.05
16 19 0.95
ACGTcount: A:0.31, C:0.21, G:0.05, T:0.44
Consensus pattern (17 bp):
ATTACAGTATCTATTCC
Found at i:50946415 original size:16 final size:17
Alignment explanation
Indices: 50946379--50946416 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
50946369 AAAAAAAGCA
50946379 AAAATAGAAAATGAATT
1 AAAATAGAAAATGAATT
* *
50946396 AAAATATAAAAT-ATTT
1 AAAATAGAAAATGAATT
50946412 AAAAT
1 AAAAT
50946417 TTATTGAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (17 bp):
AAAATAGAAAATGAATT
Found at i:50947075 original size:19 final size:18
Alignment explanation
Indices: 50947026--50947067 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
50947016 CGATCCAATC
50947026 TCTTTCCTTTAAATGTTT
1 TCTTTCCTTTAAATGTTT
50947044 TCTTTCCTTTAAATGTTT
1 TCTTTCCTTTAAATGTTT
50947062 TCTTTC
1 TCTTTC
50947068 TTTTTAAAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.14, C:0.19, G:0.05, T:0.62
Consensus pattern (18 bp):
TCTTTCCTTTAAATGTTT
Found at i:50952425 original size:19 final size:19
Alignment explanation
Indices: 50952401--50952438 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
50952391 GATAGTTTAA
50952401 TGAGTTAGCAAATACGAAG
1 TGAGTTAGCAAATACGAAG
50952420 TGAGTTAGCAAATACGAAG
1 TGAGTTAGCAAATACGAAG
50952439 CTCTGATAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.11, G:0.26, T:0.21
Consensus pattern (19 bp):
TGAGTTAGCAAATACGAAG
Found at i:50953221 original size:12 final size:12
Alignment explanation
Indices: 50953204--50953229 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
50953194 CGGTTATGCA
50953204 GTAAGATTTGTG
1 GTAAGATTTGTG
50953216 GTAAGATTTGTG
1 GTAAGATTTGTG
50953228 GT
1 GT
50953230 GAATTTGATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.35, T:0.42
Consensus pattern (12 bp):
GTAAGATTTGTG
Found at i:50962536 original size:40 final size:40
Alignment explanation
Indices: 50962481--50962565 Score: 118
Period size: 40 Copynumber: 2.1 Consensus size: 40
50962471 AAAATCGAAT
* * *
50962481 AGATCGAGTATTAGCGGCGTTTCT-AGAAAAGCGTCGCTAA
1 AGATCAAGAATTAGCGGCGTTTCTAAG-AAAGCGCCGCTAA
*
50962521 AGATCAAGAATTAGCGGCGTTTTTAAGAAAGCGCCGCTAA
1 AGATCAAGAATTAGCGGCGTTTCTAAGAAAGCGCCGCTAA
50962561 AGATC
1 AGATC
50962566 TTAAAAACGC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
40 38 0.95
41 2 0.05
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.24
Consensus pattern (40 bp):
AGATCAAGAATTAGCGGCGTTTCTAAGAAAGCGCCGCTAA
Found at i:50962576 original size:21 final size:23
Alignment explanation
Indices: 50962543--50962585 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 23
50962533 AGCGGCGTTT
50962543 TTAAGAAAGCGCCGCTAAAGATC
1 TTAAGAAAGCGCCGCTAAAGATC
50962566 TTAA-AAA-CGCCGCTAAAGAT
1 TTAAGAAAGCGCCGCTAAAGAT
50962586 TGACCTATAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 13 0.65
22 3 0.15
23 4 0.20
ACGTcount: A:0.42, C:0.21, G:0.19, T:0.19
Consensus pattern (23 bp):
TTAAGAAAGCGCCGCTAAAGATC
Found at i:50963214 original size:7 final size:7
Alignment explanation
Indices: 50963202--50963257 Score: 53
Period size: 7 Copynumber: 8.1 Consensus size: 7
50963192 TGACCATCCT
50963202 TAAACCC
1 TAAACCC
50963209 TAAACCC
1 TAAACCC
50963216 TAATA-CC
1 TAA-ACCC
*
50963223 TAAACTC
1 TAAACCC
*
50963230 TAAACCT
1 TAAACCC
50963237 TAAA-CC
1 TAAACCC
*
50963243 TTAACCC
1 TAAACCC
*
50963250 TTAACCC
1 TAAACCC
50963257 T
1 T
50963258 TTAAATCAGT
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
6 5 0.12
7 35 0.85
8 1 0.02
ACGTcount: A:0.39, C:0.36, G:0.00, T:0.25
Consensus pattern (7 bp):
TAAACCC
Found at i:50963232 original size:21 final size:20
Alignment explanation
Indices: 50963202--50963257 Score: 67
Period size: 21 Copynumber: 2.8 Consensus size: 20
50963192 TGACCATCCT
50963202 TAAACCCTAAACCCTAATACC
1 TAAACCCTAAACCCTAA-ACC
* *
50963223 TAAACTCTAAACCTTAAACC
1 TAAACCCTAAACCCTAAACC
* *
50963243 TTAACCCTTAACCCT
1 TAAACCCTAAACCCT
50963258 TTAAATCAGT
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
20 14 0.48
21 15 0.52
ACGTcount: A:0.39, C:0.36, G:0.00, T:0.25
Consensus pattern (20 bp):
TAAACCCTAAACCCTAAACC
Found at i:50963327 original size:21 final size:21
Alignment explanation
Indices: 50963303--50963345 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
50963293 TCTATAGTCG
*
50963303 TAAATCATAAACTA-TAAACCT
1 TAAACCATAAA-TATTAAACCT
*
50963324 TAAACCCTAAATATTAAACCT
1 TAAACCATAAATATTAAACCT
50963345 T
1 T
50963346 GGATCCCAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 2 0.11
21 17 0.89
ACGTcount: A:0.49, C:0.21, G:0.00, T:0.30
Consensus pattern (21 bp):
TAAACCATAAATATTAAACCT
Found at i:50964720 original size:6 final size:6
Alignment explanation
Indices: 50964709--50964743 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
50964699 CCTAACTCAA
* *
50964709 TCTGCG TCTGCG TCTGCG TCTGCA TTTGCG TCTGC
1 TCTGCG TCTGCG TCTGCG TCTGCG TCTGCG TCTGC
50964744 CTCTTCTCAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.03, C:0.31, G:0.29, T:0.37
Consensus pattern (6 bp):
TCTGCG
Found at i:50969020 original size:40 final size:40
Alignment explanation
Indices: 50968937--50969199 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
50968927 TTGAATGCTG
* * * * * *
50968937 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
50968977 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
50969017 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
50969057 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
50969097 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
50969137 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
50969176 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
50969200 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:50969219 original size:79 final size:80
Alignment explanation
Indices: 50968976--50969234 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
50968966 AAGTGAATAT
* * * * * *
50968976 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
50969040 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
50969056 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
50969121 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
50969136 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
50969200 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
50969215 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
50969235 TACGTGATTT
Statistics
Matches: 156, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.31
80 94 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:50970685 original size:37 final size:37
Alignment explanation
Indices: 50970635--50970713 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
50970625 TTATTACGAA
* * *
50970635 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
* *
50970672 GTCTTACTCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
50970709 GTCTT
1 GTCTT
50970714 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:50970918 original size:47 final size:47
Alignment explanation
Indices: 50970831--50971131 Score: 458
Period size: 47 Copynumber: 6.4 Consensus size: 47
50970821 CCTTTCGGGA
* * * * * * * *
50970831 CTTATCACATTTATGCACTTTCACATCCATTACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50970878 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50970925 CTTATCACATATATACACTTTCACATTCATCGCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50970972 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50971019 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50971066 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50971113 CTTATCACACATATACACT
1 CTTATCACATATATACACT
50971132 CTCTTGGCTG
Statistics
Matches: 236, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 236 1.00
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:50974404 original size:29 final size:27
Alignment explanation
Indices: 50974386--50974455 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
50974376 ATATTAAGTC
50974386 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
50974413 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
50974441 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
50974456 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:50974449 original size:28 final size:28
Alignment explanation
Indices: 50974386--50974483 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
50974376 ATATTAAGTC
*
50974386 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
50974413 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
50974441 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
50974470 CGCACACTTAGTGC
1 CGCACACTTAGTGC
50974484 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:50993571 original size:40 final size:40
Alignment explanation
Indices: 50993527--50993798 Score: 359
Period size: 40 Copynumber: 6.8 Consensus size: 40
50993517 ATAACCACAA
* * * *
50993527 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
50993567 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
50993607 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* * * *
50993647 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
50993687 GCACAAATGCCTTCAGGTCTTAGCCCGGATATCTCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
50993727 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* * *
50993767 GCATAAATGCCTTCGGGACTTAGCCCAGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
50993799 CATTCAAATG
Statistics
Matches: 203, Mismatches: 26, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
39 4 0.02
40 192 0.95
41 7 0.03
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:50993724 original size:120 final size:120
Alignment explanation
Indices: 50993507--50993788 Score: 485
Period size: 120 Copynumber: 2.4 Consensus size: 120
50993497 TCTTCGAAAT
* * *
50993507 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
*
50993571 AAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
66 AAATGCCTTCAGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
50993626 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
*
50993691 AAATGCCTTCAGGTCTTAGCCCGGATATCTCAACTCGCACAAATGCCTTCGGGTC
66 AAATGCCTTCAGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
* * *
50993746 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTA
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTA
50993789 GCCCAGATAT
Statistics
Matches: 154, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
119 4 0.03
120 150 0.97
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (120 bp):
TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
AAATGCCTTCAGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
Found at i:50996438 original size:46 final size:44
Alignment explanation
Indices: 50996350--50996463 Score: 149
Period size: 46 Copynumber: 2.5 Consensus size: 44
50996340 CCCAATGCCG
*
50996350 TGTCCCAAACATGGTCTTACACTAACACATCTCGTAGCCGATGCA
1 TGTCCCAGACAT-GTCTTACACTAACACATCTCGTAGCCGATGCA
* *
50996395 TGTCCCAGACATGTCTTACACTGACTTACGTCTCG-AGGCCGATGCA
1 TGTCCCAGACATGTCTTACACTAAC--ACATCTCGTA-GCCGATGCA
*
50996441 TGTCCTAGACATGTCTTACACTA
1 TGTCCCAGACATGTCTTACACTA
50996464 GCTCACAATA
Statistics
Matches: 61, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
44 12 0.20
45 12 0.20
46 37 0.61
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (44 bp):
TGTCCCAGACATGTCTTACACTAACACATCTCGTAGCCGATGCA
Found at i:50999283 original size:43 final size:42
Alignment explanation
Indices: 50999217--50999374 Score: 149
Period size: 43 Copynumber: 3.7 Consensus size: 42
50999207 AGTTCGTACA
* ** *
50999217 ATGCCAATTTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAGACAAGGTCTTACACGTAATCAAATA-CG
* * * *
50999260 ATGCCATTGTCCCAGAGAAGGTCTTACACGAAATCATATACG
1 ATGCCAATGTCCCAGACAAGGTCTTACACGTAATCAAATACG
* *
50999302 ATGCCAATGTCCCAGACATGGTCTTACACGTAGATCACGAAT-TG
1 ATGCCAATGTCCCAGACAAGGTCTTACACGTA-ATCA--AATACG
** *
50999346 ATGCCAACATCCCAGACATGG-CTTACACG
1 ATGCCAATGTCCCAGACAAGGTCTTACACG
50999375 ATAACACATA
Statistics
Matches: 96, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
42 30 0.31
43 44 0.46
44 20 0.21
45 2 0.02
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACAAGGTCTTACACGTAATCAAATACG
Found at i:50999371 original size:85 final size:85
Alignment explanation
Indices: 50999217--50999375 Score: 198
Period size: 85 Copynumber: 1.9 Consensus size: 85
50999207 AGTTCGTACA
* * * *** *
50999217 ATGCCAATTTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCATTGTCCCAGAGAAGGT
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCAAATATCGATGCCAACATCCCAGACAAGGT
50999282 CTTACACGAAATCATATACG
66 CTTACACGAAATCATATACG
*
50999302 ATGCCAATGTCCCAGACATGGTCTTACACGTAGATCACGAAT-T-GATGCCAACATCCCAGACAT
1 ATGCCAATGTCCCAGACATGGTCTTACACGTA-ATCA--AATATCGATGCCAACATCCCAGACAA
50999365 GG-CTTACACGA
63 GGTCTTACACGA
50999376 TAACACATAT
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
85 38 0.60
86 21 0.33
87 1 0.02
88 3 0.05
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (85 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCAAATATCGATGCCAACATCCCAGACAAGGT
CTTACACGAAATCATATACG
Found at i:51006595 original size:53 final size:53
Alignment explanation
Indices: 51006417--51006660 Score: 214
Period size: 55 Copynumber: 4.6 Consensus size: 53
51006407 ATTAGGGTTT
* * *
51006417 AAGGATACCATGT-AGAACCATGCCAAGGCATGAAAATTGGTAAGGTTTCTAAGAC
1 AAGGATACCATGTAAG-ACCATGCCAAGACATG-ACATTGGTAA-GTTTCTAAGGC
* * * *
51006472 GAGGATATCATGTAAGACCATGTCAAGACATGACATTGATAAGTTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGACATTGGTAAGTTTC--TAAGGC
* * * * *
51006527 AAAGG-TCCCATGTAAGACCATACCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGACATTGGTAAGTTTC-TAAGGC
* * * *
51006580 AAGGATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGACATTGGTAAGTTTCTAAGGC
* *
51006629 AAGGATACCATGTAAGACCATGACAAGTCATG
1 AAGGATACCATGTAAGACCATGCCAAGACATG
51006661 GAAATAGTAA
Statistics
Matches: 157, Mismatches: 26, Indels: 18
0.78 0.13 0.09
Matches are distributed among these distances:
49 29 0.18
52 6 0.04
53 43 0.27
54 14 0.09
55 60 0.38
56 5 0.03
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.23
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGACATTGGTAAGTTTCTAAGGC
Found at i:51011400 original size:73 final size:73
Alignment explanation
Indices: 51011323--51011468 Score: 292
Period size: 73 Copynumber: 2.0 Consensus size: 73
51011313 AAACTCCAAT
51011323 ACAAAATATGTTAATCTAAAACATATATTTCATATTTCATCATCAAACAACAAAAATCACAAGTT
1 ACAAAATATGTTAATCTAAAACATATATTTCATATTTCATCATCAAACAACAAAAATCACAAGTT
51011388 ATCAACAA
66 ATCAACAA
51011396 ACAAAATATGTTAATCTAAAACATATATTTCATATTTCATCATCAAACAACAAAAATCACAAGTT
1 ACAAAATATGTTAATCTAAAACATATATTTCATATTTCATCATCAAACAACAAAAATCACAAGTT
51011461 ATCAACAA
66 ATCAACAA
51011469 TGGTATAACT
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 73 1.00
ACGTcount: A:0.51, C:0.18, G:0.03, T:0.29
Consensus pattern (73 bp):
ACAAAATATGTTAATCTAAAACATATATTTCATATTTCATCATCAAACAACAAAAATCACAAGTT
ATCAACAA
Found at i:51022610 original size:20 final size:20
Alignment explanation
Indices: 51022581--51022631 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
51022571 TGGGTATTCC
51022581 ATTGACGGCTTTGTACCACT
1 ATTGACGGCTTTGTACCACT
*
51022601 ATTGATGGCTTTGTACCACT
1 ATTGACGGCTTTGTACCACT
51022621 ATTGACGGCTT
1 ATTGACGGCTT
51022632 CGTGCCGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.37
Consensus pattern (20 bp):
ATTGACGGCTTTGTACCACT
Found at i:51022721 original size:26 final size:26
Alignment explanation
Indices: 51022674--51022743 Score: 68
Period size: 26 Copynumber: 2.7 Consensus size: 26
51022664 TGATACTGGT
** *
51022674 AGCTTTGCTACGCTACTGTTACTAGC
1 AGCTTTGCTACAATACTATTACTAGC
* *
51022700 AGCTTTGCTACAATATTATTACTGGC
1 AGCTTTGCTACAATACTATTACTAGC
* * *
51022726 AGCTATGCTGCGATACTA
1 AGCTTTGCTACAATACTA
51022744 GTGTGTTGGC
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.34
Consensus pattern (26 bp):
AGCTTTGCTACAATACTATTACTAGC
Found at i:51032159 original size:27 final size:27
Alignment explanation
Indices: 51032128--51032182 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
51032118 CTTAAGTGAG
51032128 ATAAGGGGGTGAATTATGTTGGATGCT
1 ATAAGGGGGTGAATTATGTTGGATGCT
51032155 ATAAGGGGGTGAATTATGTTGGATGCT
1 ATAAGGGGGTGAATTATGTTGGATGCT
51032182 A
1 A
51032183 GTCCCCTAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.27, C:0.04, G:0.36, T:0.33
Consensus pattern (27 bp):
ATAAGGGGGTGAATTATGTTGGATGCT
Found at i:51032720 original size:28 final size:28
Alignment explanation
Indices: 51032689--51032764 Score: 89
Period size: 28 Copynumber: 2.7 Consensus size: 28
51032679 ATAAAGTGAT
51032689 TTGGGCCGAATGGGCCATATAAATAAGA
1 TTGGGCCGAATGGGCCATATAAATAAGA
* * **
51032717 TTGGGCCTAATGGGCCATATGAATTTGA
1 TTGGGCCGAATGGGCCATATAAATAAGA
* * *
51032745 TTGGGTCGGATGGGCTATAT
1 TTGGGCCGAATGGGCCATAT
51032765 GAACGTGAAT
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.26, C:0.13, G:0.32, T:0.29
Consensus pattern (28 bp):
TTGGGCCGAATGGGCCATATAAATAAGA
Found at i:51037218 original size:29 final size:28
Alignment explanation
Indices: 51037177--51037322 Score: 159
Period size: 29 Copynumber: 5.1 Consensus size: 28
51037167 GTATGCATAA
*
51037177 ATAT-AATGTGATTTGGGCCGGATGGGCC
1 ATATAAATGTGA-TTGGGCCGAATGGGCC
* *
51037205 ATATAAATGAGATTGGGCCTAATGGGCC
1 ATATAAATGTGATTGGGCCGAATGGGCC
* *
51037233 ATATGAATGTGAATTGGGCCTAATGGGCC
1 ATATAAATGTG-ATTGGGCCGAATGGGCC
* * *
51037262 ATATGAACGTGAATTGGGCCGGATGGGCC
1 ATATAAATGTG-ATTGGGCCGAATGGGCC
* * *
51037291 ATATAAATGAGATTGGGCCTAGTGGGCC
1 ATATAAATGTGATTGGGCCGAATGGGCC
51037319 ATAT
1 ATAT
51037323 GCATGTATGT
Statistics
Matches: 102, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
28 45 0.44
29 57 0.56
ACGTcount: A:0.27, C:0.14, G:0.32, T:0.26
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCGAATGGGCC
Found at i:51037306 original size:57 final size:58
Alignment explanation
Indices: 51037189--51037323 Score: 168
Period size: 57 Copynumber: 2.4 Consensus size: 58
51037179 ATAATGTGAT
** * * *
51037189 TTGGGCCGGATGGGCCATAT-AAATGAGATTGGGCCTAATGGGCCATATGAATGTGAA
1 TTGGGCCTAATGGGCCATATGAAATGAGATTGGGCCGAATGGGCCATATAAATGAGAA
* *
51037246 TTGGGCCTAATGGGCCATATGAACGTGA-ATTGGGCCGGATGGGCCATATAAATGAG-A
1 TTGGGCCTAATGGGCCATATGAA-ATGAGATTGGGCCGAATGGGCCATATAAATGAGAA
*
51037303 TTGGGCCTAGTGGGCCATATG
1 TTGGGCCTAATGGGCCATATG
51037324 CATGTATGTA
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
57 39 0.57
58 26 0.38
59 3 0.04
ACGTcount: A:0.26, C:0.16, G:0.34, T:0.24
Consensus pattern (58 bp):
TTGGGCCTAATGGGCCATATGAAATGAGATTGGGCCGAATGGGCCATATAAATGAGAA
Found at i:51049177 original size:35 final size:35
Alignment explanation
Indices: 51049138--51049208 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
51049128 GTGAGTTTAA
51049138 ATGAAAGTCACTGGTGTGATTTTGGGTGAGAAATG
1 ATGAAAGTCACTGGTGTGATTTTGGGTGAGAAATG
51049173 ATGAAAGTCACTGGTGTGATTTTGGGTGAGAAATG
1 ATGAAAGTCACTGGTGTGATTTTGGGTGAGAAATG
51049208 A
1 A
51049209 AGCTAGAAGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.30, C:0.06, G:0.34, T:0.31
Consensus pattern (35 bp):
ATGAAAGTCACTGGTGTGATTTTGGGTGAGAAATG
Found at i:51054297 original size:27 final size:27
Alignment explanation
Indices: 51054267--51054463 Score: 261
Period size: 27 Copynumber: 7.3 Consensus size: 27
51054257 GGCATAATTT
*
51054267 TCATTTTACCCTACAGGGGAATTATGG
1 TCATTTTACCCTACAGGGGCATTATGG
51054294 TCATTTTACCCTACAGGGGCATTATGG
1 TCATTTTACCCTACAGGGGCATTATGG
* *
51054321 CCATTTTACCCTAC-GGGGCATTACGG
1 TCATTTTACCCTACAGGGGCATTATGG
* * *
51054347 TCATTTTATCCTACAGGGGCATTACGA
1 TCATTTTACCCTACAGGGGCATTATGG
* * *
51054374 CCATTTTATCCTACAGGGGCATTACGG
1 TCATTTTACCCTACAGGGGCATTATGG
**
51054401 TCATTTTACCCTACAAAGGCATTATGG
1 TCATTTTACCCTACAGGGGCATTATGG
* * *
51054428 TCATTTTACCCTTCAAGGGTATTATGG
1 TCATTTTACCCTACAGGGGCATTATGG
51054455 TCATTTTAC
1 TCATTTTAC
51054464 AAACCAGGGT
Statistics
Matches: 153, Mismatches: 16, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
26 23 0.15
27 130 0.85
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.34
Consensus pattern (27 bp):
TCATTTTACCCTACAGGGGCATTATGG
Found at i:51054390 original size:80 final size:81
Alignment explanation
Indices: 51054267--51054439 Score: 240
Period size: 80 Copynumber: 2.1 Consensus size: 81
51054257 GGCATAATTT
* ** *
51054267 TCATTTTACCCTACAGGGGAATTATGGTCATTTTACCCTACAGGGGCATTATGGCCATTTTACCC
1 TCATTTTACCCTACAGGGGAATTACGACCATTTTACCCTACAGGGGCATTACGGCCATTTTACCC
**
51054332 TAC-GGGGCATTACGG
66 TACAAAGGCATTACGG
* * * *
51054347 TCATTTTATCCTACAGGGGCATTACGACCATTTTATCCTACAGGGGCATTACGGTCATTTTACCC
1 TCATTTTACCCTACAGGGGAATTACGACCATTTTACCCTACAGGGGCATTACGGCCATTTTACCC
*
51054412 TACAAAGGCATTATGG
66 TACAAAGGCATTACGG
51054428 TCATTTTACCCT
1 TCATTTTACCCT
51054440 TCAAGGGTAT
Statistics
Matches: 80, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
80 60 0.75
81 20 0.25
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (81 bp):
TCATTTTACCCTACAGGGGAATTACGACCATTTTACCCTACAGGGGCATTACGGCCATTTTACCC
TACAAAGGCATTACGG
Found at i:51069015 original size:46 final size:46
Alignment explanation
Indices: 51068962--51069137 Score: 162
Period size: 46 Copynumber: 3.8 Consensus size: 46
51068952 TATTTGGGCA
*
51068962 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
51069008 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * * * * *
51069053 CATCTGAACTCATTGAGTTGAGTCTGAGTTCACTCATGAATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
51069101 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
51069138 GCGGGTTACA
Statistics
Matches: 101, Mismatches: 20, Indels: 18
0.73 0.14 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 57 0.56
47 26 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:51069117 original size:93 final size:93
Alignment explanation
Indices: 51068958--51069130 Score: 265
Period size: 93 Copynumber: 1.9 Consensus size: 93
51068948 AGGATATTTG
* * * * *
51068958 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCAAGTTCACTCATGAATGCGAACGCCCGAACTCGTTGAG
51069023 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* ** *
51069051 GGCATCTGAACTCATTGAGTTGAGTCTGAGTTCACTCATGAATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCAAGTTCACTCATGAATGCGAACGCCCGAACTCGTTGAG
51069116 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
51069131 CTTATGGGCG
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTCCAAGTTCACTCATGAATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:51072975 original size:46 final size:46
Alignment explanation
Indices: 51072922--51073097 Score: 162
Period size: 46 Copynumber: 3.8 Consensus size: 46
51072912 TATTTGGGCA
*
51072922 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
51072968 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * * * * *
51073013 CATCTGAACTCATTGAGTTGAGTCTGAGTTCACTCATGAATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
51073061 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
51073098 GCGGGTTACA
Statistics
Matches: 101, Mismatches: 20, Indels: 18
0.73 0.14 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 57 0.56
47 26 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:51073077 original size:93 final size:93
Alignment explanation
Indices: 51072918--51073090 Score: 265
Period size: 93 Copynumber: 1.9 Consensus size: 93
51072908 AGGATATTTG
* * * * *
51072918 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCAAGTTCACTCATGAATGCGAACGCCCGAACTCGTTGAG
51072983 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* ** *
51073011 GGCATCTGAACTCATTGAGTTGAGTCTGAGTTCACTCATGAATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCAAGTTCACTCATGAATGCGAACGCCCGAACTCGTTGAG
51073076 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
51073091 CTTATGGGCG
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTCCAAGTTCACTCATGAATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:51076935 original size:46 final size:46
Alignment explanation
Indices: 51076882--51077057 Score: 162
Period size: 46 Copynumber: 3.8 Consensus size: 46
51076872 TATTTGGGCA
*
51076882 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
51076928 TCCGAACTCGTTGAGTTGAGTCCGAGTT--CGTA-AGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * * *
51076973 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGAATACGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
51077021 CCCGAGCTCGTTTAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
51077058 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 18, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 3 0.03
45 1 0.01
46 57 0.55
47 28 0.27
48 1 0.01
49 2 0.02
50 2 0.02
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:51077038 original size:93 final size:93
Alignment explanation
Indices: 51076878--51077050 Score: 265
Period size: 93 Copynumber: 1.9 Consensus size: 93
51076868 AGGATATTTG
* * * * *
51076878 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTCATGAATACGAACGCCCGAACTCGTTGAG
51076943 TTGAGTCCGAGTTCGTAAGATGTAACTA
66 TTGAGTCCGAGTTCGTAAGATGTAACTA
* * *
51076971 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGAATACGAACGCCCGAGCTCGTTTAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTCATGAATACGAACGCCCGAACTCGTTGAG
*
51077036 TTGAGTCTGAGTTCG
66 TTGAGTCCGAGTTCG
51077051 CTTATGGGCG
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTCATGAATACGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTAAGATGTAACTA
Found at i:51089676 original size:27 final size:27
Alignment explanation
Indices: 51089645--51089822 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
51089635 TAAATTGTAC
51089645 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
51089672 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
51089698 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
* *
51089726 GGCACTAAGTGTGCGAGTTTAACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
51089754 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * * *
51089781 GGCACTAAGTGTGCGAGTTGATTTTAT
1 AGCACTAAGTGTGCGATTTGACTATGT
51089808 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
51089823 GGCTCGATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 105 0.83
28 22 0.17
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:51089762 original size:82 final size:81
Alignment explanation
Indices: 51089646--51089801 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
51089636 AAATTGTACA
* *
51089646 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGATTTAACTATGTAGCACTAAGTGTGCGAAATGAATATG-TGGCACTAAGTG
51089710 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
51089727 GCACTAAGTGTGCGAGTTTAACTATGTAGCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTAACTATGTAGCACTAAGTGTGCGAAATGAATATGTGGCACTAAGTG
*
51089792 TGCGAGTTGA
65 TGCGAATTGA
51089802 TTTTATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTAACTATGTAGCACTAAGTGTGCGAAATGAATATGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:51089813 original size:82 final size:81
Alignment explanation
Indices: 51089642--51089822 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
51089632 GATTAAATTG
* *
51089642 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTAACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
51089707 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
51089723 TGCGGCACTAAGTGTGCGAGTTTAACTATGTAGCACTAAGTGTGCGATTTGATTATG-TGGCACT
1 TACAGCACTAAGTGTGCGA-TTTAACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* ***
51089787 AAGTGTGCGAGTTGATTT
64 AAGTGTGCGAATTGACCA
*
51089805 TATAGCACTAAGTGTGCG
1 TACAGCACTAAGTGTGCG
51089823 GGCTCGATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTAACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:51097687 original size:27 final size:27
Alignment explanation
Indices: 51097657--51097812 Score: 188
Period size: 27 Copynumber: 5.7 Consensus size: 27
51097647 AAATTGTACA
*
51097657 GCACTAAGTGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGATTTGACTATGTG
** *
51097684 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGATTTGACTATG-TG
* * *
51097711 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGATTTGACTATGTG
* *
51097738 GCACTAAGTGTGCGAGTTTAACTATGTA
1 GCACTAAGTGTGCGA-TTTGACTATGTG
*
51097766 GCACTAAGTGTGCGATTTGATTATGTG
1 GCACTAAGTGTGCGATTTGACTATGTG
*
51097793 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGATTTGA
51097813 TTTTATAGCA
Statistics
Matches: 110, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
27 87 0.79
28 23 0.21
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGATTTGACTATGTG
Found at i:51097773 original size:82 final size:81
Alignment explanation
Indices: 51097657--51097812 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
51097647 AAATTGTACA
* *
51097657 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGATTTAACTATGTAGCACTAAGTGTGCGAAATGAATATG-TGGCACTAAGTG
51097721 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
51097738 GCACTAAGTGTGCGAGTTTAACTATGTAGCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTAACTATGTAGCACTAAGTGTGCGAAATGAATATGTGGCACTAAGTG
*
51097803 TGCGAGTTGA
65 TGCGAATTGA
51097813 TTTTATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTAACTATGTAGCACTAAGTGTGCGAAATGAATATGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:51097796 original size:55 final size:53
Alignment explanation
Indices: 51097656--51097812 Score: 215
Period size: 55 Copynumber: 2.9 Consensus size: 53
51097646 TAAATTGTAC
* **
51097656 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATG
* * * *
51097709 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTAACTATG
1 A-GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAA-TATG
*
51097764 TAGCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGAGTTGA
1 -AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGA
51097813 TTTTATAGCA
Statistics
Matches: 89, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
53 1 0.01
54 41 0.46
55 46 0.52
56 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (53 bp):
AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATG
Found at i:51097813 original size:27 final size:27
Alignment explanation
Indices: 51097656--51097833 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
51097646 TAAATTGTAC
*
51097656 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
51097683 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
51097709 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* * *
51097737 GGCACTAAGTGTGCGAGTTTAACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* *
51097765 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * * * *
51097792 GGCACTAAGTGTGCGAGTTGATTTTAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
51097819 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
51097834 GGCTCGATAT
Statistics
Matches: 126, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.83
28 22 0.17
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:51120640 original size:40 final size:40
Alignment explanation
Indices: 51120585--51120936 Score: 508
Period size: 40 Copynumber: 8.8 Consensus size: 40
51120575 ATTTTGTCCA
*
51120585 AGCACGAATGC-CTTCGGGGCTTAGCCCGGATACATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
51120624 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
* * * * *
51120664 AGCACGAATGCTGTTCGGAACTTAGTCTGGATATATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
* *
51120704 AGCACGAATGCTCTTTGGGACTTAGCCCGGATACATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
* * *
51120744 AGCACGAATGCTCTTCGGAACTTAGTCCGGATATATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
* * *
51120784 AGCACGAATACTCTTTGGGGCTTAGCCCGGATACATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
* * * * *
51120824 AGGATGAATGCTCTTCGGAACTTAGTCCGGATATATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
51120864 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
* *
51120904 AGCACGACTGCTTTTCGGGACTTAGCCCGGATA
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATA
51120937 TAACATACTG
Statistics
Matches: 273, Mismatches: 39, Indels: 1
0.87 0.12 0.00
Matches are distributed among these distances:
39 11 0.04
40 262 0.96
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
Found at i:51122853 original size:47 final size:47
Alignment explanation
Indices: 51122790--51123089 Score: 447
Period size: 47 Copynumber: 6.4 Consensus size: 47
51122780 TCCTTCGGGA
* * * * * *
51122790 CTTATCACATTTATACACTTTCACATCCATCACATTGTCTATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
51122837 CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
51122884 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51122931 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
51122978 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51123025 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51123072 CTTATCACATATACACAC
1 CTTATCACATATATACAC
51123090 CTTGTACATC
Statistics
Matches: 229, Mismatches: 24, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 229 1.00
ACGTcount: A:0.29, C:0.31, G:0.07, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:51122954 original size:94 final size:94
Alignment explanation
Indices: 51122790--51123089 Score: 501
Period size: 94 Copynumber: 3.2 Consensus size: 94
51122780 TCCTTCGGGA
* * * * *
51122790 CTTATCACATTTATACACTTTCACATCCATCACATTGTCTATTCGGCCTTATCACATATATACAC
1 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
* * *
51122855 CTTCACATCCATCACATCGGCCATTAGGT
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
51122884 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
51122949 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
51122978 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
*
51123043 TTTCACATTCATCACATCGGCCATTAAGC
66 TTTCACATTCATCACATCGGCCATTAGGC
51123072 CTTATCACATATACACAC
1 CTTATCACATATACACAC
51123090 CTTGTACATC
Statistics
Matches: 195, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
94 195 1.00
ACGTcount: A:0.29, C:0.31, G:0.07, T:0.33
Consensus pattern (94 bp):
CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:51129626 original size:26 final size:27
Alignment explanation
Indices: 51129597--51129671 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
51129587 CATAATCGTT
* * *
51129597 ATTTTACCATACA-AGGTATTACGGCC
1 ATTTTACCCTACAGAGGCATTACGACC
* *
51129623 ATTTTACCCTACAGGGGCATTACGATC
1 ATTTTACCCTACAGAGGCATTACGACC
*
51129650 ATTTTACCCTACAGGGGCATTA
1 ATTTTACCCTACAGAGGCATTA
51129672 TGGTTATTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
26 12 0.28
27 31 0.72
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (27 bp):
ATTTTACCCTACAGAGGCATTACGACC
Found at i:51132877 original size:31 final size:31
Alignment explanation
Indices: 51132839--51132902 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
51132829 CCTTTTCATA
*
51132839 TTTCATATTTCATAACACTAGGTCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
** *
51132870 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
51132901 TT
1 TT
51132903 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAACACTAGGCCGAAGCCT
Found at i:51133160 original size:23 final size:24
Alignment explanation
Indices: 51133115--51133212 Score: 166
Period size: 23 Copynumber: 4.2 Consensus size: 24
51133105 GGCCTAGACT
*
51133115 CTTTTAATAACTGGGGCAAAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
51133139 CTTTTAATAACT-GGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
51133162 C-TTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
51133185 C-TTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
51133208 CTTTT
1 CTTTT
51133213 TCACTTCCTC
Statistics
Matches: 71, Mismatches: 1, Indels: 4
0.93 0.01 0.05
Matches are distributed among these distances:
22 10 0.14
23 46 0.65
24 15 0.21
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (24 bp):
CTTTTAATAACTGGGGCATAAGCC
Found at i:51133287 original size:20 final size:20
Alignment explanation
Indices: 51133262--51133328 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
51133252 TTATGATTAC
51133262 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
51133282 ATCATGTGCATATCATACCT
1 ATCATGTGCATATCATACAT
*
51133302 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
51133322 ACCATGT
1 ATCATGT
51133329 CTATCAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:51133397 original size:25 final size:25
Alignment explanation
Indices: 51133365--51133412 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
51133355 ATACATAAAC
* * *
51133365 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
51133390 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
51133413 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:51139995 original size:19 final size:19
Alignment explanation
Indices: 51139959--51139997 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
51139949 TTTTCACCAT
* *
51139959 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
51139978 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
51139997 A
1 A
51139998 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:51140429 original size:28 final size:29
Alignment explanation
Indices: 51140356--51140443 Score: 94
Period size: 28 Copynumber: 3.1 Consensus size: 29
51140346 ACATACACCC
* * * *
51140356 CCAGATACAGA-AA-ATGTGACAGAGTCA
1 CCAGATACAGATAATTTGTGGCATAGCCA
*
51140383 CCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAATTTGTGGCA-TAGCCA
51140412 CCAGA-ACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAATTTGTGGCATAGCCA
51140440 CCAG
1 CCAG
51140444 GACGCTTCTT
Statistics
Matches: 51, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
27 12 0.24
28 25 0.49
29 14 0.27
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.20
Consensus pattern (29 bp):
CCAGATACAGATAATTTGTGGCATAGCCA
Found at i:51140601 original size:28 final size:28
Alignment explanation
Indices: 51140549--51140613 Score: 87
Period size: 28 Copynumber: 2.3 Consensus size: 28
51140539 AAATTAACCC
51140549 TAGGGGTATAAAGGTTATTTAGCATACA
1 TAGGGGTATAAAGGTTATTTAGCATACA
* *
51140577 TAGGGGTATAATGG-TAGTTTTGCATACA
1 TAGGGGTATAAAGGTTA-TTTAGCATACA
*
51140605 AAGGGGTAT
1 TAGGGGTAT
51140614 TCTAGTAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
27 2 0.06
28 31 0.94
ACGTcount: A:0.32, C:0.06, G:0.29, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAAAGGTTATTTAGCATACA
Found at i:51144377 original size:5 final size:6
Alignment explanation
Indices: 51144335--51144383 Score: 71
Period size: 6 Copynumber: 8.2 Consensus size: 6
51144325 TAATTTTCTG
* * *
51144335 CTTCCC CTTCCC CTTTCC CTTCCC CTTCTC CTTCCC CCTCCC CTTCCC
1 CTTCCC CTTCCC CTTCCC CTTCCC CTTCCC CTTCCC CTTCCC CTTCCC
51144383 C
1 C
51144384 CATCCTTGAC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.00, C:0.65, G:0.00, T:0.35
Consensus pattern (6 bp):
CTTCCC
Found at i:51149793 original size:14 final size:14
Alignment explanation
Indices: 51149774--51149811 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
51149764 CCAGAAAAGT
51149774 AAATCATTTTCCAG
1 AAATCATTTTCCAG
*
51149788 AAATCATTTTCTAG
1 AAATCATTTTCCAG
*
51149802 AAAACATTTT
1 AAATCATTTT
51149812 ACTGACAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.39, C:0.16, G:0.05, T:0.39
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:51150387 original size:43 final size:41
Alignment explanation
Indices: 51150281--51150412 Score: 142
Period size: 43 Copynumber: 3.1 Consensus size: 41
51150271 CATGCTATCT
* * *
51150281 CATATCGATACCACTATCCCAGACAGGGTCTTACACG-AATCA
1 CATATCGATGCCAC-ATCCCAGACATGGTCTTACTCGTAA-CA
* **
51150323 AATAT-GATGCCGATGTCCCAGACATGGTCTTACTCGTAACCA
1 CATATCGATGCC-ACATCCCAGACATGGTCTTACTCGTAA-CA
51150365 CATATCGATGCCAACATCCCAGACATGGTCTTACTCGATAACA
1 CATATCGATGCC-ACATCCCAGACATGGTCTTACTCG-TAACA
51150408 CATAT
1 CATAT
51150413 AGGAAATCCT
Statistics
Matches: 75, Mismatches: 11, Indels: 7
0.81 0.12 0.08
Matches are distributed among these distances:
41 24 0.32
42 13 0.17
43 35 0.47
44 3 0.04
ACGTcount: A:0.32, C:0.29, G:0.15, T:0.24
Consensus pattern (41 bp):
CATATCGATGCCACATCCCAGACATGGTCTTACTCGTAACA
Found at i:51152161 original size:43 final size:42
Alignment explanation
Indices: 51152114--51152201 Score: 122
Period size: 42 Copynumber: 2.1 Consensus size: 42
51152104 AGACGTGGTT
* * * *
51152114 TTACATGTAATCAAATATCGATGCCACTATCCTAGACAGGGTC
1 TTACATGAAATCAAATA-CGATGCCAATATCCCAAACAGGGTC
*
51152157 TTACATGAAATCAAATACGATGCCAATATCCCAAACATGGTC
1 TTACATGAAATCAAATACGATGCCAATATCCCAAACAGGGTC
51152199 TTA
1 TTA
51152202 AACGTAAATC
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
42 24 0.60
43 16 0.40
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.27
Consensus pattern (42 bp):
TTACATGAAATCAAATACGATGCCAATATCCCAAACAGGGTC
Found at i:51152199 original size:42 final size:43
Alignment explanation
Indices: 51152091--51152261 Score: 141
Period size: 43 Copynumber: 4.0 Consensus size: 43
51152081 AGCTCGTACA
** * * *
51152091 ATGCCAACGTCCCAGACGTGGTTTTACATGTAATCAAATATCG
1 ATGCCAATATCCCAGACATGGTCTTACATGAAATCAAATATCG
* * *
51152134 ATGCCACTATCCTAGACAGGGTCTTACATGAAATCAAATA-CG
1 ATGCCAATATCCCAGACATGGTCTTACATGAAATCAAATATCG
* * *
51152176 ATGCCAATATCCCAAACATGGTCTTAAACGTAAATCTCAAAT-T-G
1 ATGCCAATATCCCAGACATGGTCTTACATG-AAA--TCAAATATCG
*** * * *
51152220 ATGCCAGCGTCCCAGACGTGGTCTTACACGAAATCACATATC
1 ATGCCAATATCCCAGACATGGTCTTACATGAAATCAAATATC
51152262 AGAAATCCTA
Statistics
Matches: 101, Mismatches: 21, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
41 5 0.05
42 27 0.27
43 38 0.38
44 25 0.25
45 6 0.06
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.25
Consensus pattern (43 bp):
ATGCCAATATCCCAGACATGGTCTTACATGAAATCAAATATCG
Found at i:51152211 original size:43 final size:43
Alignment explanation
Indices: 51152122--51152211 Score: 110
Period size: 42 Copynumber: 2.1 Consensus size: 43
51152112 TTTTACATGT
* * * * *
51152122 AATCAAATATCGATGCCACTATCCTAGACAGGGTCTTACATGA
1 AATCAAATATCGATGCCAATATCCCAAACAGGGTCTTAAACGA
*
51152165 AATCAAATA-CGATGCCAATATCCCAAACATGGTCTTAAACGTA
1 AATCAAATATCGATGCCAATATCCCAAACAGGGTCTTAAACG-A
51152208 AATC
1 AATC
51152212 TCAAATTGAT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
42 26 0.65
43 14 0.35
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.24
Consensus pattern (43 bp):
AATCAAATATCGATGCCAATATCCCAAACAGGGTCTTAAACGA
Found at i:51154413 original size:23 final size:23
Alignment explanation
Indices: 51154387--51154430 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
51154377 CGCAAAAATA
*
51154387 ATTAAATGCT-AAATTTCATGTCT
1 ATTAAATG-TGAAATTACATGTCT
*
51154410 ATTATATGTGAAATTACATGT
1 ATTAAATGTGAAATTACATGT
51154431 GTGAAATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 1 0.06
23 17 0.94
ACGTcount: A:0.36, C:0.09, G:0.11, T:0.43
Consensus pattern (23 bp):
ATTAAATGTGAAATTACATGTCT
Found at i:51155944 original size:48 final size:48
Alignment explanation
Indices: 51155880--51156027 Score: 242
Period size: 48 Copynumber: 3.1 Consensus size: 48
51155870 TTGATGTACA
*
51155880 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTAAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
51155928 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
** ** *
51155976 AGCCATGCATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
51156024 AGAT
1 AGAT
51156028 GTGTATATAT
Statistics
Matches: 92, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 92 1.00
ACGTcount: A:0.38, C:0.08, G:0.24, T:0.30
Consensus pattern (48 bp):
AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:51158147 original size:40 final size:40
Alignment explanation
Indices: 51158049--51158482 Score: 387
Period size: 40 Copynumber: 10.6 Consensus size: 40
51158039 TCCTCGTTCA
* * * * ** *
51158049 AATGCCTTCCGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
51158088 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
51158128 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
51158168 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
51158208 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
51158248 AAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACG
* *
51158288 AAAGCCTTCGGGACTTAGCCCGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTT-----C---G---GGACTTAACCCGGATTTAACAACTCGCACG
51158339 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
51158379 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
51158419 AAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACG
* *
51158459 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
51158483 CAGCATTCAC
Statistics
Matches: 331, Mismatches: 42, Indels: 43
0.80 0.10 0.10
Matches are distributed among these distances:
39 39 0.12
40 246 0.74
41 13 0.04
43 1 0.00
45 1 0.00
46 1 0.00
50 5 0.02
51 22 0.07
52 3 0.01
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:51158191 original size:80 final size:80
Alignment explanation
Indices: 51158049--51158482 Score: 441
Period size: 80 Copynumber: 5.3 Consensus size: 80
51158039 TCCTCGTTCA
* * * * * *
51158049 AATGCCTTCCGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACATAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
51158113 TTAACAACTCGCACG
66 TTAACAACTCGCACG
* *
51158128 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
51158193 TTAACAACTCGCACG
66 TTAACAACTCGCACG
* * *
51158208 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGA
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGA
* * *
51158272 TATATTC-ACTTAGCAC-
65 TTTA-ACAAC-TCGCACG
* * *
51158288 AAAGCCTTCGGGACTTAGCCCGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGAC
1 AATGCCTT-----C---G---GGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAC
51158353 TTAACCCGGATTTAACAACTCGCACG
55 TTAACCCGGATTTAACAACTCGCACG
* * *
51158379 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGA
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGA
* * *
51158443 TATATTC-ACTTAGCAC-
65 TTTA-ACAAC-TCGCACG
* *
51158459 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
51158483 CAGCATTCAC
Statistics
Matches: 299, Mismatches: 35, Indels: 41
0.80 0.09 0.11
Matches are distributed among these distances:
79 39 0.13
80 178 0.60
81 12 0.04
83 1 0.00
85 1 0.00
86 1 0.00
88 1 0.00
90 6 0.02
91 57 0.19
92 3 0.01
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
TTAACAACTCGCACG
Found at i:51158386 original size:91 final size:91
Alignment explanation
Indices: 51158218--51158483 Score: 281
Period size: 91 Copynumber: 3.0 Consensus size: 91
51158208 AATGCCTTCG
* * * *
51158218 GGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGATCTTAATCCGGATATATTCACTT
1 GGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGATCTTAACCCGGATATATACACTT
*
51158283 AGCACAAAGCCTTCGGGACTTAGCCC
66 AGCACAAAGCCTTCGGGACTTAACCC
* * *
51158309 GGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC
1 GGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTC-GGATCTTAACCCGGATATATAC-AC
* *
51158372 -TCGCACGAATGCCTTCGGGACTTAACCC
64 TTAGCAC-AAAGCCTTCGGGACTTAACCC
* * *
51158400 GGA-TTTA----G---T-AT--CTCGCACAAAGGCCTTCGGATCTTAATCCGGATATATTCACTT
1 GGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGATCTTAACCCGGATATATACACTT
*
51158454 AGCACAAAGCCTTCGGGACTTAGCCC
66 AGCACAAAGCCTTCGGGACTTAACCC
51158480 GGAC
1 GGAC
51158484 AGCATTCACT
Statistics
Matches: 149, Mismatches: 19, Indels: 24
0.78 0.10 0.12
Matches are distributed among these distances:
79 3 0.02
80 52 0.35
81 6 0.04
82 2 0.01
83 1 0.01
86 1 0.01
90 9 0.06
91 72 0.48
92 3 0.02
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (91 bp):
GGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGATCTTAACCCGGATATATACACTT
AGCACAAAGCCTTCGGGACTTAACCC
Found at i:51158423 original size:171 final size:171
Alignment explanation
Indices: 51158138--51158483 Score: 692
Period size: 171 Copynumber: 2.0 Consensus size: 171
51158128 AATGCCTTCG
51158138 GGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAACAACTC
1 GGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAACAACTC
51158203 GCACGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGATCTTAATC
66 GCACGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGATCTTAATC
51158268 CGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCC
131 CGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCC
51158309 GGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAACAACTC
1 GGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAACAACTC
51158374 GCACGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGATCTTAATC
66 GCACGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGATCTTAATC
51158439 CGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCC
131 CGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCC
51158480 GGAC
1 GGAC
51158484 AGCATTCACT
Statistics
Matches: 175, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
171 175 1.00
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (171 bp):
GGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAACAACTC
GCACGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGATCTTAATC
CGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCC
Found at i:51158426 original size:131 final size:131
Alignment explanation
Indices: 51158178--51158429 Score: 366
Period size: 131 Copynumber: 1.9 Consensus size: 131
51158168 AATGCCTTCG
** *
51158178 GGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTC
1 GGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAACAACTC
* *
51158243 GCACAAAGGCCTTCGGATCTTAATCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCC
66 GCACAAAGGCCTTCGGATCTTAACCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCC
51158308 C
131 C
*
51158309 GGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAACAACTC
1 GGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAACAACTC
* * * *
51158374 GCACGAATGCCTTCGGGA-CTTAACCCGGATTTAGT-A-TCTCGCACAAAGGCCTTCGG
66 GCACAAAGGCCTTC-GGATCTTAACCCGGATATAGTCACT-TAGCACAAA-GCCTTCGG
51158430 ATCTTAATCC
Statistics
Matches: 108, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
129 1 0.01
130 9 0.08
131 95 0.88
132 3 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (131 bp):
GGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAACAACTC
GCACAAAGGCCTTCGGATCTTAACCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCC
C
Found at i:51161342 original size:40 final size:40
Alignment explanation
Indices: 51161287--51161403 Score: 182
Period size: 40 Copynumber: 3.0 Consensus size: 40
51161277 AAGTTTAGTA
*
51161287 TGTTATATCTGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
1 TGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
51161327 TGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
1 TGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
* * * *
51161367 TGATGTATCCGGGCTAAGCCCCAAAG-GCATTCGTGCT
1 TGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
51161404 TTGACAAAAT
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
39 11 0.15
40 61 0.85
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.27
Consensus pattern (40 bp):
TGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
Found at i:51161416 original size:39 final size:40
Alignment explanation
Indices: 51161297--51161417 Score: 120
Period size: 40 Copynumber: 3.0 Consensus size: 40
51161287 TGTTATATCT
* * ** *
51161297 GGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCC
1 GGGCTAAGCCCCAAAGAGCATTCGTGCTGGTGAAAAATCC
* * ***
51161337 GGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATGTATCC
1 GGGCTAAGCCCCAAAGAGCATTCGTGCTGGTGAAAAATCC
*
51161377 GGGCTAAGCCCCAAAG-GCATTCGTGCT-TTGACAAAATCC
1 GGGCTAAGCCCCAAAGAGCATTCGTGCTGGTGA-AAAATCC
51161416 GG
1 GG
51161418 ACTTGAGGTC
Statistics
Matches: 72, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
38 3 0.04
39 17 0.24
40 52 0.72
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.24
Consensus pattern (40 bp):
GGGCTAAGCCCCAAAGAGCATTCGTGCTGGTGAAAAATCC
Found at i:51162197 original size:12 final size:12
Alignment explanation
Indices: 51162180--51162205 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
51162170 TGAGTGAACG
51162180 ATATCTGAACTT
1 ATATCTGAACTT
51162192 ATATCTGAACTT
1 ATATCTGAACTT
51162204 AT
1 AT
51162206 TCATTACTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.15, G:0.08, T:0.42
Consensus pattern (12 bp):
ATATCTGAACTT
Found at i:51162347 original size:23 final size:23
Alignment explanation
Indices: 51162321--51162364 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
51162311 CGCAAAAATA
* *
51162321 ATTAAATGTTAAATTTCATGTCT
1 ATTAAATGTGAAATTACATGTCT
*
51162344 ATTATATGTGAAATTACATGT
1 ATTAAATGTGAAATTACATGT
51162365 GTGAAATTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.36, C:0.07, G:0.11, T:0.45
Consensus pattern (23 bp):
ATTAAATGTGAAATTACATGTCT
Found at i:51163877 original size:48 final size:47
Alignment explanation
Indices: 51163813--51163960 Score: 215
Period size: 48 Copynumber: 3.1 Consensus size: 47
51163803 TTGATGTACA
*
51163813 AGATATATATATGTGGTAAAGCCGAATGACTAATGTAAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATG-CTAATGTGAAATATGTATG
51163861 AGATATATATATGTGGTAAAGCCGAATTGCTAATGTGAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAA-TGCTAATGTGAAATATGTATG
** ** *
51163909 AGCCATGCATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAAT-GCTAATGTGAAATATGTATG
51163957 AGAT
1 AGAT
51163961 GTGTATATAT
Statistics
Matches: 90, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
47 1 0.01
48 87 0.97
49 2 0.02
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (47 bp):
AGATATATATATGTGGTAAAGCCGAATGCTAATGTGAAATATGTATG
Found at i:51165985 original size:31 final size:31
Alignment explanation
Indices: 51165941--51166019 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
51165931 TTTAACGGTT
*
51165941 ACTGGGACGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
* *
51165972 ACTGGGCCAAAGCCTTTTCATAAATCATTTC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
51166003 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
51166020 ACTGTAAATG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:51166090 original size:42 final size:42
Alignment explanation
Indices: 51166043--51166134 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
51166033 TGGCCCTTAG
* * *
51166043 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATATCAATGAATGTATGCAA
*
51166085 GCCCATTTCAATATCATATGAAATATCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATATCAATGAATGTATGCAA
51166127 GCCCATTT
1 GCCCATTT
51166135 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.20, G:0.14, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATATCAATGAATGTATGCAA
Found at i:51166350 original size:26 final size:26
Alignment explanation
Indices: 51166279--51166401 Score: 196
Period size: 26 Copynumber: 4.8 Consensus size: 26
51166269 CCTCTTTAAT
* *
51166279 AACTGGGGCA-AAGCACTTTTCGATA
1 AACTGGGGCATAAGCCCTTTTCAATA
51166304 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
**
51166329 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
51166355 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
51166381 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
51166402 GCACTTCCTC
Statistics
Matches: 91, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
25 33 0.36
26 58 0.64
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:51166477 original size:20 final size:20
Alignment explanation
Indices: 51166452--51166537 Score: 138
Period size: 20 Copynumber: 4.3 Consensus size: 20
51166442 TATGAATACT
51166452 TCATGTGCATTTCATACATA
1 TCATGTGCATTTCATACATA
51166472 TCATGTGCATTTCATACATA
1 TCATGTGCATTTCATACATA
*
51166492 TCATGTGCATTTTATACATA
1 TCATGTGCATTTCATACATA
*
51166512 TCATGTGCATATCATATCA-A
1 TCATGTGCATTTCATA-CATA
51166532 TCATGT
1 TCATGT
51166538 ATATCATATC
Statistics
Matches: 62, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
20 60 0.97
21 2 0.03
ACGTcount: A:0.30, C:0.19, G:0.10, T:0.41
Consensus pattern (20 bp):
TCATGTGCATTTCATACATA
Found at i:51167368 original size:27 final size:27
Alignment explanation
Indices: 51167338--51167735 Score: 180
Period size: 27 Copynumber: 14.7 Consensus size: 27
51167328 TTTCATTCTA
* * *
51167338 CAAGGGTGTTTTGGTAAATCTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
**
51167365 CAAGGGTATTTCT-GTAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTACAAAT
51167392 C-AGGGATATTTTGGTAATTTTACAAAT
1 CAAGGG-TATTTTGGTAATTTTACAAAT
* * * *
51167419 TAAGGGTATTTCGATAA-TTCACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
51167444 CCAGTGGTATTTTGGTAATTTTACAAA-
1 CAAG-GGTATTTTGGTAATTTTACAAAT
* * * **
51167471 CTAGGGGTGTTTTGGTAATTATACCCTAT
1 C-AAGGGTATTTTGGTAATTTTA-CAAAT
* ** *
51167500 -AGGGGTATTTCAGTAATTTCAC-AAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* **** *
51167525 CGAGGGTAAAACGGTAATTTTATAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
***** * *
51167552 CAAGGGTAAAACAGTAATTCTATAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *** * * *
51167579 CGAGGGTAAAATAGTAATTCTATAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
51167606 CGAGGGTACTTTGGTAATTTTTACAAGT
1 CAAGGGTATTTTGGTAA-TTTTACAAAT
* **
51167634 CGAGGGTATTTCAGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
51167661 CAGGGGGTATTTTAGTAATTTTACAAAC
1 CA-AGGGTATTTTGGTAATTTTACAAAT
** * **
51167689 CAATAGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
** *
51167716 CGGGGGTACTTTGGTAATTT
1 CAAGGGTATTTTGGTAATTT
51167736 GGTAAACTAA
Statistics
Matches: 290, Mismatches: 68, Indels: 26
0.76 0.18 0.07
Matches are distributed among these distances:
25 4 0.01
26 38 0.13
27 195 0.67
28 53 0.18
ACGTcount: A:0.33, C:0.10, G:0.20, T:0.37
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:51167661 original size:55 final size:55
Alignment explanation
Indices: 51167591--51167735 Score: 166
Period size: 55 Copynumber: 2.6 Consensus size: 55
51167581 AGGGTAAAAT
* * ** * *
51167591 AGTAATTCTATAAATCGAGGGTACTTTGGTAATTTTTACAAGTCGAGGGTATTTC
1 AGTAATTTTATAAATCGGGGGTACTTTGGTAATTTTTACAAACCAAGAGTATTTC
* * * * *
51167646 AGTAATTTTACAAATCAGGGGGTATTTTAGTAA-TTTTACAAACCAATAGTATTTT
1 AGTAATTTTATAAATC-GGGGGTACTTTGGTAATTTTTACAAACCAAGAGTATTTC
*
51167701 AGTAATTTTGTAAATCGGGGGTACTTTGGTAATTT
1 AGTAATTTTATAAATCGGGGGTACTTTGGTAATTT
51167736 GGTAAACTAA
Statistics
Matches: 73, Mismatches: 15, Indels: 4
0.79 0.16 0.04
Matches are distributed among these distances:
54 14 0.19
55 46 0.63
56 13 0.18
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (55 bp):
AGTAATTTTATAAATCGGGGGTACTTTGGTAATTTTTACAAACCAAGAGTATTTC
Found at i:51170472 original size:27 final size:28
Alignment explanation
Indices: 51170388--51170485 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
51170378 CATGAGATTG
* * * *
51170388 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
51170417 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
51170445 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
51170472 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
51170486 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:51170496 original size:27 final size:27
Alignment explanation
Indices: 51170416--51170498 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
51170406 TAAATTGTAC
* *
51170416 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
51170444 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
51170471 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
51170498 A
1 A
51170499 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:51170499 original size:29 final size:27
Alignment explanation
Indices: 51170388--51170499 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
51170378 CATGAGATTG
** * *
51170388 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
51170417 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
51170445 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
51170472 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
51170500 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:51178320 original size:27 final size:28
Alignment explanation
Indices: 51178236--51178333 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
51178226 CATGAGATTG
* * * *
51178236 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
51178265 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
51178293 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
51178320 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
51178334 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:51178344 original size:27 final size:27
Alignment explanation
Indices: 51178264--51178346 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
51178254 TAAATTGTAC
* *
51178264 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
51178292 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
51178319 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
51178346 A
1 A
51178347 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:51178347 original size:29 final size:27
Alignment explanation
Indices: 51178236--51178347 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
51178226 CATGAGATTG
** * *
51178236 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
51178265 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
51178293 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
51178320 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
51178348 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:51186200 original size:27 final size:28
Alignment explanation
Indices: 51186116--51186213 Score: 144
Period size: 27 Copynumber: 3.5 Consensus size: 28
51186106 CATGAGATTG
* * *
51186116 GCACTAAGTGTGCGGGTTTGAATTGTACA
1 GCACTAAGTGTGCGAGTTTG-ATTATATA
51186145 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
51186173 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
51186200 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
51186214 GACTTAATAT
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
27 24 0.37
28 22 0.34
29 19 0.29
ACGTcount: A:0.26, C:0.13, G:0.30, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:51186224 original size:27 final size:27
Alignment explanation
Indices: 51186116--51186226 Score: 98
Period size: 27 Copynumber: 4.0 Consensus size: 27
51186106 CATGAGATTG
** * *
51186116 GCACTAAGTGTGCGGGTTTGAATTGTACA
1 GCACTAAGTGTGC-GACTTGAA-TATATA
* *
51186145 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTGAATATATA
* *
51186173 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTGAATATATA
*
51186200 GCACTGAGTGTGCGGACTT-AATATATA
1 GCACTAAGTGTGC-GACTTGAATATATA
51186227 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 30 0.42
28 24 0.33
29 18 0.25
ACGTcount: A:0.28, C:0.13, G:0.27, T:0.32
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTGAATATATA
Found at i:51186227 original size:29 final size:27
Alignment explanation
Indices: 51186116--51186227 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
51186106 CATGAGATTG
** * *
51186116 GCACTAAGTGTGCGGGTTTGAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
51186145 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
51186173 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
51186200 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
51186228 TTTGAATCAC
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.28, C:0.12, G:0.27, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:51187701 original size:1 final size:1
Alignment explanation
Indices: 51187695--51187774 Score: 160
Period size: 1 Copynumber: 80.0 Consensus size: 1
51187685 GTTAACTTCG
51187695 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
51187760 TTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTT
51187775 GTTTCTGGAC
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 79 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:51219349 original size:93 final size:93
Alignment explanation
Indices: 51219234--51219404 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
51219224 GCCCATAAGT
*
51219234 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
51219299 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
51219327 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAAGTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
51219392 CGAGTTCGGATGC
66 CGAGTTCGGATGC
51219405 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:51219401 original size:46 final size:46
Alignment explanation
Indices: 51219226--51219401 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
51219216 TGTAACCCGC
* *
51219226 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
51219272 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * *
51219322 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
51219365 CCATAAGTGAACTCGGACTCAAGTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
51219402 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 1 0.01
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:51223100 original size:68 final size:67
Alignment explanation
Indices: 51223028--51223175 Score: 167
Period size: 67 Copynumber: 2.2 Consensus size: 67
51223018 TCATGTGTAT
* * * *
51223028 AAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCAT
1 AAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCAT
51223090 GTAGAC
62 GTAGAC
** * *
51223096 AAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAG
1 AAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGTAG
51223161 AC
66 AC
51223163 AAGAGAGCTACGA
1 AAGAGAGCTACGA
51223176 GATAAACGGG
Statistics
Matches: 68, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.38
68 11 0.16
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (67 bp):
AAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGTAG
AC
Done.