Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 157 of 255
Found at i:51223130 original size:64 final size:64
Alignment explanation
Indices: 51223050--51223233 Score: 183
Period size: 67 Copynumber: 2.8 Consensus size: 64
51223040 AGACATTATG
* *
51223050 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
51223114 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
51223179 AA
63 AA
* * * * * * *
51223181 ACG-GGCTAGGTCACACGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
51223234 CGAACTATAT
Statistics
Matches: 96, Mismatches: 20, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
62 1 0.01
63 19 0.20
64 21 0.22
65 8 0.08
66 15 0.16
67 32 0.33
ACGTcount: A:0.30, C:0.18, G:0.30, T:0.22
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:51227545 original size:68 final size:67
Alignment explanation
Indices: 51227469--51227618 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
51227459 CATCATGTGT
* * * *
51227469 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
51227531 ATGTAG
62 ATGTAG
** * *
51227537 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
51227602 AG
66 AG
51227604 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
51227619 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:51227574 original size:64 final size:64
Alignment explanation
Indices: 51227493--51227676 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
51227483 AGACATTATG
* *
51227493 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
51227557 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
51227622 AA
63 AA
* * * *
51227624 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
51227677 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:51239072 original size:50 final size:48
Alignment explanation
Indices: 51238898--51239305 Score: 248
Period size: 46 Copynumber: 8.6 Consensus size: 48
51238888 GTATAATGCT
* *
51238898 GATGCCATGTCCCAGACATGGTCTTACACTGGTTCATCCATCAT-GT--C
1 GATGCCATGTCCCAGACATGGTCTTACACT-GCTCATACAT-ATCGTGCC
* * * * *
51238945 GACGCCATGTCCCAGACATGGTCTTACATTGACT-ATAGAAATCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTG-CTCATACATATCG-TGCC
* *
51238994 GACGCCATGTCCCAGACATGGTCTTACACTAGCTCATACATATCCGTGCT
1 GATGCCATGTCCCAGACATGGTCTTACACT-GCTCATACATAT-CGTGCC
* * *
51239044 GATGCCATGTCCCAGATATGGTCTTACACTG-ACACTTC-TATACGTGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGCTCA-TACATAT-CGTGCC
* * * * *
51239092 GATGCCATGTCCCAGACATGGTTTTCCA-T--TGACACATCTCGTAGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGCTCATACATATCGT-GCC
* * * *
51239138 GATG-CATGTCCCAAACAT-GTCTTACAGTGGCT--TACATCTCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACT-GCTCATACATATCG-TGCC
* * * * * *
51239184 AAT-ACATGTCCTAGACAT-GTCTTACACTAGTTC-T-CATCTCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACT-GCTCATACATATC-GTGCC
* *
51239230 GATGCCATGTCCC-GAACATGGTCTTACACTAGCTCTTATA-AT-GTGGCC
1 GATGCCATGTCCCAG-ACATGGTCTTACACT-GCTCATACATATCGT-GCC
*
51239278 GATG-CATGTCCCTGACAT-GTCTTACACT
1 GATGCCATGTCCCAGACATGGTCTTACACT
51239306 AGCACACAAT
Statistics
Matches: 289, Mismatches: 46, Indels: 53
0.74 0.12 0.14
Matches are distributed among these distances:
44 6 0.02
45 20 0.07
46 73 0.25
47 55 0.19
48 58 0.20
49 37 0.13
50 38 0.13
51 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGCTCATACATATCGTGCC
Found at i:51239113 original size:48 final size:47
Alignment explanation
Indices: 51238898--51239163 Score: 202
Period size: 48 Copynumber: 5.6 Consensus size: 47
51238888 GTATAATGCT
*** * * * *
51238898 GATGCCATGTCCCAGACATGGTCTTACACTGGTTCATCCATCATGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACACTTCTATCGTGCC
* * *** *
51238945 GACGCCATGTCCCAGACATGGTCTTACATTGACTA-TAGAAATCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGAC-ACT-TCTATCG-TGCC
* * * *
51238994 GACGCCATGTCCCAGACATGGTCTTACACT-AGCTCATACATATCCGTGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGA-CAC-TTC-TAT-CGTGCC
*
51239044 GATGCCATGTCCCAGATATGGTCTTACACTGACACTTCTATACGTGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACACTTCTAT-CGTGCC
* * * *
51239092 GATGCCATGTCCCAGACATGGTTTTCCATTGACACATC--TCGTAGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACACTTCTATCGT-GCC
*
51239138 GATG-CATGTCCCAAACAT-GTCTTACA
1 GATGCCATGTCCCAGACATGGTCTTACA
51239164 GTGGCTTACA
Statistics
Matches: 176, Mismatches: 33, Indels: 23
0.76 0.14 0.10
Matches are distributed among these distances:
44 6 0.03
45 16 0.09
46 8 0.05
47 29 0.16
48 45 0.26
49 34 0.19
50 35 0.20
51 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGACACTTCTATCGTGCC
Found at i:51252355 original size:13 final size:13
Alignment explanation
Indices: 51252337--51252364 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
51252327 ACATATTATA
51252337 AATATTTTGTGTT
1 AATATTTTGTGTT
51252350 AATATTTTGTGTT
1 AATATTTTGTGTT
51252363 AA
1 AA
51252365 AAATAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57
Consensus pattern (13 bp):
AATATTTTGTGTT
Found at i:51253826 original size:40 final size:40
Alignment explanation
Indices: 51253778--51253951 Score: 312
Period size: 40 Copynumber: 4.3 Consensus size: 40
51253768 GGACTAAGAT
51253778 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* **
51253818 CCGAAGGCATTTGTGGTAGTTTCTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
51253858 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
51253898 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
51253938 CCGAAGGCATTTGT
1 CCGAAGGCATTTGT
51253952 ATGTGTTGCT
Statistics
Matches: 127, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 127 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:51253965 original size:40 final size:40
Alignment explanation
Indices: 51253778--51253983 Score: 248
Period size: 40 Copynumber: 5.2 Consensus size: 40
51253768 GGACTAAGAT
51253778 CCGAAGGCATTTG-TGCTAG-TGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTTG-TAGTTG-CTATATCCGGGCTAAGTC
* *
51253818 CCGAAGGCATTTGTGGTAGTTTCTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTTGTAGTTGCTATATCCGGGCTAAGTC
51253858 CCGAAGGCATTTG-TGCTAG-TGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTTG-TAGTTG-CTATATCCGGGCTAAGTC
*
51253898 CCGAAGGCATTTG-TGCTAG-TGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTTG-TAGTTG-CTATATCCGGGCTAAGTC
*
51253938 CCGAAGGCATTTGTATGT-GTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGT-TGTAGTTGCTATATCCGGGCTAAGTC
*
51253977 CTGAAGG
1 CCGAAGG
51253984 TACTTGGGTT
Statistics
Matches: 151, Mismatches: 8, Indels: 15
0.87 0.05 0.09
Matches are distributed among these distances:
39 16 0.11
40 128 0.85
41 5 0.03
42 2 0.01
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (40 bp):
CCGAAGGCATTTGTTGTAGTTGCTATATCCGGGCTAAGTC
Found at i:51261989 original size:40 final size:40
Alignment explanation
Indices: 51261941--51262217 Score: 396
Period size: 40 Copynumber: 7.2 Consensus size: 40
51261931 GGACTAAGAT
*
51261941 CCGAAGGCATTTGTGCTAGTGACTATATCTGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
**
51261981 CCGAAGGCATTTGTGCTAGTTTCTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
51262021 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
51262061 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
51262101 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
51262141 CCGAA---A-----GC-AGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
51262172 CCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
51262211 CCGAAGG
1 CCGAAGG
51262218 TACTTGGGTT
Statistics
Matches: 219, Mismatches: 8, Indels: 21
0.88 0.03 0.08
Matches are distributed among these distances:
31 27 0.12
32 2 0.01
34 1 0.00
37 1 0.00
39 17 0.08
40 169 0.77
41 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:51262159 original size:31 final size:31
Alignment explanation
Indices: 51262118--51262176 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
51262108 CATTTGTGCT
51262118 AGTGACTATATCCGGGCTAAGTCCCGAAAGC
1 AGTGACTATATCCGGGCTAAGTCCCGAAAGC
*
51262149 AGTGATTATATCCGGGCTAAGTCCCGAA
1 AGTGACTATATCCGGGCTAAGTCCCGAA
51262177 GGCATTTGTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.29, C:0.24, G:0.25, T:0.22
Consensus pattern (31 bp):
AGTGACTATATCCGGGCTAAGTCCCGAAAGC
Found at i:51262200 original size:71 final size:70
Alignment explanation
Indices: 51262084--51262215 Score: 221
Period size: 71 Copynumber: 1.9 Consensus size: 70
51262074 TGCTAGTTAC
* *
51262084 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAAGC
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCC-GGCTAAATCCCGAAAGC
51262149 AGTGAT
65 AGTGAT
51262155 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CTATATCCGGCTAAATCCCGAA
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACTATATCCGGCTAAATCCCGAA
51262216 GGTACTTGGG
Statistics
Matches: 58, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
70 13 0.22
71 43 0.74
72 2 0.03
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (70 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGCTAAATCCCGAAAGCA
GTGAT
Found at i:51274930 original size:39 final size:40
Alignment explanation
Indices: 51274669--51274930 Score: 310
Period size: 39 Copynumber: 6.7 Consensus size: 40
51274659 GCTCCTCGTT
* *
51274669 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
51274709 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
51274749 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
51274788 CAAATGCTTTCGGG-CTTAGCCCGGAATTAGCATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
51274827 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
** *
51274866 CAAATGCCTTC-GGATCTTAATCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
51274907 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
51274931 CATCATCCAA
Statistics
Matches: 199, Mismatches: 15, Indels: 17
0.86 0.06 0.07
Matches are distributed among these distances:
38 2 0.01
39 123 0.62
40 63 0.32
41 11 0.06
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:51298304 original size:999 final size:999
Alignment explanation
Indices: 51296368--51298370 Score: 3907
Period size: 999 Copynumber: 2.0 Consensus size: 999
51296358 AGTCCTTCAA
*
51296368 GGGCATAATAATCATTTCGTAAATTGGGGTCTGGGTACACTTATCGACTTATTAGTAGGTCCATA
1 GGGCATAATAATCATTTCGCAAATTGGGGTCTGGGTACACTTATCGACTTATTAGTAGGTCCATA
51296433 GTCGTCTTGTGCGACTCGTGCAACCTTTACCAATCAAAACATACAATCGGGCCTAAAGCCTATTA
66 GTCGTCTTGTGCGACTCGTGCAACCTTTACCAATCAAAACATACAATCGGGCCTAAAGCCTATTA
51296498 CGAAGCCCAAGTGAGGCCCACATGCTCATATAGCCTGCTAAGCCCAAAATTAACCTTAGCCATGT
131 CGAAGCCCAAGTGAGGCCCACATGCTCATATAGCCTGCTAAGCCCAAAATTAACCTTAGCCATGT
51296563 GAACAACACAGCCTGGTCCAATATCTCTATATTTGCACAACAAAAACCCAAGTGAGGCCCACGAG
196 GAACAACACAGCCTGGTCCAATATCTCTATATTTGCACAACAAAAACCCAAGTGAGGCCCACGAG
51296628 CCCATTGGGCCCTCACGGTCCATTTCGGCCCAAAAATCAACCTAATCCCATGAGATCGCTCAAGG
261 CCCATTGGGCCCTCACGGTCCATTTCGGCCCAAAAATCAACCTAATCCCATGAGATCGCTCAAGG
51296693 CAGCCTCTTCTATTGTATCAGATTTTCCACACGTGCGTTCGCACATTCGTGTGGCAACTGTCGCT
326 CAGCCTCTTCTATTGTATCAGATTTTCCACACGTGCGTTCGCACATTCGTGTGGCAACTGTCGCT
51296758 GTACTTTCAGCTTTTTGGCATTTCGACACTTCGGCTTTTTGCCGTTCTACGATCTATTAGTATGG
391 GTACTTTCAGCTTTTTGGCATTTCGACACTTCGGCTTTTTGCCGTTCTACGATCTATTAGTATGG
*
51296823 GTACACACCTCTTTGTGAAACCACACTCAAATCCACGTGCTCCAAACCTATAATCAGTCAAGACA
456 GTACACACCTCTTTGCGAAACCACACTCAAATCCACGTGCTCCAAACCTATAATCAGTCAAGACA
51296888 TACAGTTAATCCTACGCTAATCTAAAGAAAAGATACATGCCCAAGAGAGAGTTCATAATTGGCCA
521 TACAGTTAATCCTACGCTAATCTAAAGAAAAGATACATGCCCAAGAGAGAGTTCATAATTGGCCA
51296953 ACACTAGAACTACAAGTTCGTTTACCACAGATAATTGATCAGAAGATAAGTAGATCTCCACCACA
586 ACACTAGAACTACAAGTTCGTTTACCACAGATAATTGATCAGAAGATAAGTAGATCTCCACCACA
51297018 ATTGTATCCCTCGAAAGTCCTTACACTTCTCGTGAGGCTAGAATCCACACCACCCATTTAAGAGA
651 ATTGTATCCCTCGAAAGTCCTTACACTTCTCGTGAGGCTAGAATCCACACCACCCATTTAAGAGA
51297083 AAGAGTTGGCGATAAAAAGATAATAACTATTCGGTTTAGTCAATAGAAAGGAAGGTGTCATGAAA
716 AAGAGTTGGCGATAAAAAGATAATAACTATTCGGTTTAGTCAATAGAAAGGAAGGTGTCATGAAA
*
51297148 ACCATTTAAATAGAATAGGGAGGGTGGTGAGTAACTTACTGGATGTTATCGAACTTCTGTAAACT
781 ACCATTTAAATAGAATAGGGAGGGTGGTGAGTAACTTACTGGATGTTATCGAACTTCTGCAAACT
* *
51297213 AGAACCACAACCCCAAGGGAGGATCAATTCTATATTCAGCTACCCCGCAAAAACAAAACTGAAGA
846 AGAACCACAACCCCAAGGGAGGATCAATTCTATATTCAGCTACCCCACAAAAACAAAACTAAAGA
51297278 GAAAAGAAAGAATCAAGAAGAGAAGAAGAGAGAGAGGAAGAACAGTATAGTAATGACTACTAGAA
911 GAAAAGAAAGAATCAAGAAGAGAAGAAGAGAGAGAGGAAGAACAGTATAGTAATGACTACTAGAA
51297343 TATGGGAAAAAAAAACAAGTATTC
976 TATGGGAAAAAAAAACAAGTATTC
51297367 GGGCATAATAATCATTTCGCAAATTGGGGTCTGGGTACACTTATCGACTTATTAGTAGGTCCATA
1 GGGCATAATAATCATTTCGCAAATTGGGGTCTGGGTACACTTATCGACTTATTAGTAGGTCCATA
51297432 GTCGTCTTGTGCGACTCGTGCAACCTTTACCAATCAAAACATACAATCGGGCCTAAAGCCTATTA
66 GTCGTCTTGTGCGACTCGTGCAACCTTTACCAATCAAAACATACAATCGGGCCTAAAGCCTATTA
51297497 CGAAGCCCAAGTGAGGCCCACATGCTCATATAGCCTGCTAAGCCCAAAATTAACCTTAGCCATGT
131 CGAAGCCCAAGTGAGGCCCACATGCTCATATAGCCTGCTAAGCCCAAAATTAACCTTAGCCATGT
51297562 GAACAACACAGCCTGGTCCAATATCTCTATATTTGCACAACAAAAACCCAAGTGAGGCCCACGAG
196 GAACAACACAGCCTGGTCCAATATCTCTATATTTGCACAACAAAAACCCAAGTGAGGCCCACGAG
51297627 CCCATTGGGCCCTCACGGTCCATTTCGGCCCAAAAATCAACCTAATCCCATGAGATCGCTCAAGG
261 CCCATTGGGCCCTCACGGTCCATTTCGGCCCAAAAATCAACCTAATCCCATGAGATCGCTCAAGG
*
51297692 CGGCCTCTTCTATTGTATCAGATTTTCCACACGTGCGTTCGCACATTCGTGTGGCAACTGTCGCT
326 CAGCCTCTTCTATTGTATCAGATTTTCCACACGTGCGTTCGCACATTCGTGTGGCAACTGTCGCT
51297757 GTACTTTCAGCTTTTTGGCATTTCGACACTTCGGCTTTTTGCCGTTCTACGATCTATTAGTATGG
391 GTACTTTCAGCTTTTTGGCATTTCGACACTTCGGCTTTTTGCCGTTCTACGATCTATTAGTATGG
*
51297822 GTACACACCTCTTTGCGAAACCACACTCAAATCCACGTGCTCCGAACCTATAATCAGTCAAGACA
456 GTACACACCTCTTTGCGAAACCACACTCAAATCCACGTGCTCCAAACCTATAATCAGTCAAGACA
*
51297887 TATAGTTAATCCTACGCTAATCTAAAGAAAAGATACATGCCCAAGAGAGAGTTCATAATTGGCCA
521 TACAGTTAATCCTACGCTAATCTAAAGAAAAGATACATGCCCAAGAGAGAGTTCATAATTGGCCA
51297952 ACACTAGAACTACAAGTTCGTTTACCACAGATAATTGATCAGAAGATAAGTAGATCTCCACCACA
586 ACACTAGAACTACAAGTTCGTTTACCACAGATAATTGATCAGAAGATAAGTAGATCTCCACCACA
51298017 ATTGTATCCCTCGAAAGTCCTTACACTTCTCGTGAGGCTAGAATCCACACCACCCATTTAAGAGA
651 ATTGTATCCCTCGAAAGTCCTTACACTTCTCGTGAGGCTAGAATCCACACCACCCATTTAAGAGA
51298082 AAGAGTTGGCGATAAAAAGATAATAACTATTCGGTTTAGTCAATAGAAAGGAAGGTGTCATGAAA
716 AAGAGTTGGCGATAAAAAGATAATAACTATTCGGTTTAGTCAATAGAAAGGAAGGTGTCATGAAA
51298147 ACCATTTAAATAGAATAGGGAGGGTGGTGAGTAACTTACTGGATGTTATCGAACTTCTGCAAACT
781 ACCATTTAAATAGAATAGGGAGGGTGGTGAGTAACTTACTGGATGTTATCGAACTTCTGCAAACT
*
51298212 AGAACCACAACCCCAAGGGAGGATCAATTCTATATTCAGCTACCCCACAAAAACAACACTAAAGA
846 AGAACCACAACCCCAAGGGAGGATCAATTCTATATTCAGCTACCCCACAAAAACAAAACTAAAGA
51298277 GAAAAGAAAGAATCAAGAAGAGAAGAAGAGAGAGAGGAAGAACAGTATAGTAATGACTACTAGAA
911 GAAAAGAAAGAATCAAGAAGAGAAGAAGAGAGAGAGGAAGAACAGTATAGTAATGACTACTAGAA
**
51298342 TATGGGGTAAAAAAACAAGTATTC
976 TATGGGAAAAAAAAACAAGTATTC
51298366 GGGCA
1 GGGCA
51298371 AATGAAAATG
Statistics
Matches: 993, Mismatches: 11, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
999 993 1.00
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.24
Consensus pattern (999 bp):
GGGCATAATAATCATTTCGCAAATTGGGGTCTGGGTACACTTATCGACTTATTAGTAGGTCCATA
GTCGTCTTGTGCGACTCGTGCAACCTTTACCAATCAAAACATACAATCGGGCCTAAAGCCTATTA
CGAAGCCCAAGTGAGGCCCACATGCTCATATAGCCTGCTAAGCCCAAAATTAACCTTAGCCATGT
GAACAACACAGCCTGGTCCAATATCTCTATATTTGCACAACAAAAACCCAAGTGAGGCCCACGAG
CCCATTGGGCCCTCACGGTCCATTTCGGCCCAAAAATCAACCTAATCCCATGAGATCGCTCAAGG
CAGCCTCTTCTATTGTATCAGATTTTCCACACGTGCGTTCGCACATTCGTGTGGCAACTGTCGCT
GTACTTTCAGCTTTTTGGCATTTCGACACTTCGGCTTTTTGCCGTTCTACGATCTATTAGTATGG
GTACACACCTCTTTGCGAAACCACACTCAAATCCACGTGCTCCAAACCTATAATCAGTCAAGACA
TACAGTTAATCCTACGCTAATCTAAAGAAAAGATACATGCCCAAGAGAGAGTTCATAATTGGCCA
ACACTAGAACTACAAGTTCGTTTACCACAGATAATTGATCAGAAGATAAGTAGATCTCCACCACA
ATTGTATCCCTCGAAAGTCCTTACACTTCTCGTGAGGCTAGAATCCACACCACCCATTTAAGAGA
AAGAGTTGGCGATAAAAAGATAATAACTATTCGGTTTAGTCAATAGAAAGGAAGGTGTCATGAAA
ACCATTTAAATAGAATAGGGAGGGTGGTGAGTAACTTACTGGATGTTATCGAACTTCTGCAAACT
AGAACCACAACCCCAAGGGAGGATCAATTCTATATTCAGCTACCCCACAAAAACAAAACTAAAGA
GAAAAGAAAGAATCAAGAAGAGAAGAAGAGAGAGAGGAAGAACAGTATAGTAATGACTACTAGAA
TATGGGAAAAAAAAACAAGTATTC
Found at i:51300179 original size:26 final size:26
Alignment explanation
Indices: 51300143--51300193 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
51300133 GTAAGAACTC
51300143 TGCCTCATACTCCGCCACAGATGGTT
1 TGCCTCATACTCCGCCACAGATGGTT
51300169 TGCCTCATACTCCGCCACAGATGGT
1 TGCCTCATACTCCGCCACAGATGGT
51300194 CTCCCTCCAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.20, C:0.35, G:0.20, T:0.25
Consensus pattern (26 bp):
TGCCTCATACTCCGCCACAGATGGTT
Found at i:51300200 original size:26 final size:26
Alignment explanation
Indices: 51300145--51300200 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
51300135 AAGAACTCTG
* *
51300145 CCTCATACTCCGCCACAGATGGTTTG
1 CCTCATACTCCGCCACAGATGGTCTC
51300171 CCTCATACTCCGCCACAGATGGTCTC
1 CCTCATACTCCGCCACAGATGGTCTC
51300197 CCTC
1 CCTC
51300201 CACGCATCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.18, C:0.41, G:0.16, T:0.25
Consensus pattern (26 bp):
CCTCATACTCCGCCACAGATGGTCTC
Found at i:51305263 original size:46 final size:46
Alignment explanation
Indices: 51305196--51305289 Score: 170
Period size: 46 Copynumber: 2.0 Consensus size: 46
51305186 TTTTCCATGG
51305196 ATGAGTATGCTGAAATTTTGAAATTTATGGCAGAAAATGAAAGGTT
1 ATGAGTATGCTGAAATTTTGAAATTTATGGCAGAAAATGAAAGGTT
* *
51305242 ATGAGTATGTTGAAATTTTGAAATTTATGGTAGAAAATGAAAGGTT
1 ATGAGTATGCTGAAATTTTGAAATTTATGGCAGAAAATGAAAGGTT
51305288 AT
1 AT
51305290 TGATAGATAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.39, C:0.02, G:0.23, T:0.35
Consensus pattern (46 bp):
ATGAGTATGCTGAAATTTTGAAATTTATGGCAGAAAATGAAAGGTT
Found at i:51314416 original size:29 final size:28
Alignment explanation
Indices: 51314364--51314490 Score: 132
Period size: 29 Copynumber: 4.5 Consensus size: 28
51314354 ATGAGCCACT
*
51314364 AGGCCCAATCTCA-TTTATATGGCCCATC
1 AGGCCCAAT-TCACTTCATATGGCCCATC
* *
51314392 CGGCCCAATTCACGTTCATATGGCCCATT
1 AGGCCCAATTCAC-TTCATATGGCCCATC
* *
51314421 AGGCCCAATTCACATTCAAATGGCCCATT
1 AGGCCCAATTCAC-TTCATATGGCCCATC
*
51314450 AGGCCCAATCTCA-TTTATATGGCCCATC
1 AGGCCCAAT-TCACTTCATATGGCCCATC
* *
51314478 CGGCCCAAATCAC
1 AGGCCCAATTCAC
51314491 ATTATATTCA
Statistics
Matches: 84, Mismatches: 11, Indels: 8
0.82 0.11 0.08
Matches are distributed among these distances:
27 6 0.07
28 27 0.32
29 48 0.57
30 3 0.04
ACGTcount: A:0.26, C:0.34, G:0.15, T:0.25
Consensus pattern (28 bp):
AGGCCCAATTCACTTCATATGGCCCATC
Found at i:51314426 original size:57 final size:57
Alignment explanation
Indices: 51314363--51314493 Score: 149
Period size: 57 Copynumber: 2.3 Consensus size: 57
51314353 TATGAGCCAC
* * * *
51314363 TAGGCCCAA-TCTCATTTATATGGCCCATCCGGCCCAAT-TCACGTTCATATGGCCCAT
1 TAGGCCCAATTCACATTCAAATGGCCCATCAGGCCCAATCTCA--TTCATATGGCCCAT
* *
51314420 TAGGCCCAATTCACATTCAAATGGCCCATTAGGCCCAATCTCATTTATATGGCCCAT
1 TAGGCCCAATTCACATTCAAATGGCCCATCAGGCCCAATCTCATTCATATGGCCCAT
** *
51314477 CCGGCCCAAATCACATT
1 TAGGCCCAATTCACATT
51314494 ATATTCATGC
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
57 36 0.57
58 24 0.38
59 3 0.05
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.27
Consensus pattern (57 bp):
TAGGCCCAATTCACATTCAAATGGCCCATCAGGCCCAATCTCATTCATATGGCCCAT
Found at i:51324090 original size:16 final size:16
Alignment explanation
Indices: 51324056--51324090 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
51324046 GTAGCCAAAC
*
51324056 TTTTGACTTTTCGGTA
1 TTTTGACTTTTCGGCA
*
51324072 TTTTGACTTTTTGGCA
1 TTTTGACTTTTCGGCA
51324088 TTT
1 TTT
51324091 CGGCTTTTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.11, C:0.11, G:0.17, T:0.60
Consensus pattern (16 bp):
TTTTGACTTTTCGGCA
Found at i:51324591 original size:24 final size:24
Alignment explanation
Indices: 51324564--51324612 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
51324554 AAAGAGATAA
51324564 GGTACTTACACCAAAAGAGCAATC
1 GGTACTTACACCAAAAGAGCAATC
51324588 GGTACTTACACCAAAAGAGCAATC
1 GGTACTTACACCAAAAGAGCAATC
51324612 G
1 G
51324613 ACCCAAGGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.41, C:0.24, G:0.18, T:0.16
Consensus pattern (24 bp):
GGTACTTACACCAAAAGAGCAATC
Found at i:51325471 original size:18 final size:18
Alignment explanation
Indices: 51325445--51325481 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
51325435 GGTAAGTTGG
51325445 TGTAACTCGAATGTAAAC
1 TGTAACTCGAATGTAAAC
*
51325463 TGTATCTCGAATGTAAAC
1 TGTAACTCGAATGTAAAC
51325481 T
1 T
51325482 ATCTTTAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.32
Consensus pattern (18 bp):
TGTAACTCGAATGTAAAC
Found at i:51334280 original size:61 final size:61
Alignment explanation
Indices: 51334185--51334306 Score: 244
Period size: 61 Copynumber: 2.0 Consensus size: 61
51334175 ACAACATCTC
51334185 AACATATCCTCAAGTATTTGAATGATTCGTTCAGACTGACCATCCGTCTGGAGGTGGAAAG
1 AACATATCCTCAAGTATTTGAATGATTCGTTCAGACTGACCATCCGTCTGGAGGTGGAAAG
51334246 AACATATCCTCAAGTATTTGAATGATTCGTTCAGACTGACCATCCGTCTGGAGGTGGAAAG
1 AACATATCCTCAAGTATTTGAATGATTCGTTCAGACTGACCATCCGTCTGGAGGTGGAAAG
51334307 TAGTGCTAAA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.28
Consensus pattern (61 bp):
AACATATCCTCAAGTATTTGAATGATTCGTTCAGACTGACCATCCGTCTGGAGGTGGAAAG
Found at i:51347824 original size:27 final size:26
Alignment explanation
Indices: 51347780--51347847 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 26
51347770 TGGATAAGTT
51347780 GTAGAATTACCGAAATACCCTTGTAGG
1 GTAGAATTACC-AAATACCCTTGTAGG
*
51347807 GTAGAATTACCAAGATACCCTTGTGGG
1 GTAGAATTACCAA-ATACCCTTGTAGG
*
51347834 GTAAAATTACCAAA
1 GTAGAATTACCAAA
51347848 AATGACTATT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
26 3 0.08
27 35 0.92
ACGTcount: A:0.37, C:0.18, G:0.21, T:0.25
Consensus pattern (26 bp):
GTAGAATTACCAAATACCCTTGTAGG
Found at i:51348547 original size:27 final size:26
Alignment explanation
Indices: 51348503--51348554 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
51348493 CTCGCTGCAA
*
51348503 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
51348530 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
51348555 GCAGCCTCGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:51355208 original size:27 final size:27
Alignment explanation
Indices: 51355177--51355242 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
51355167 TAGATATGTA
51355177 GTAGAATTACCAAAATACCCCT-GTAGG
1 GTAGAATTACCAAAATA-CCCTAGTAGG
* * *
51355204 GTAGAATTACCGAGATACCCTAGTGGG
1 GTAGAATTACCAAAATACCCTAGTAGG
*
51355231 GTAAAATTACCA
1 GTAGAATTACCA
51355243 TTTTGCCCCT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
26 4 0.12
27 29 0.88
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.23
Consensus pattern (27 bp):
GTAGAATTACCAAAATACCCTAGTAGG
Found at i:51374371 original size:49 final size:50
Alignment explanation
Indices: 51374299--51374537 Score: 275
Period size: 49 Copynumber: 4.8 Consensus size: 50
51374289 TGAGGTCATG
* * *
51374299 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATT-GGTCGCA
1 TGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATTAGGTCACA
* * * * * * *
51374348 TGTGTAGTACCAAGTGCAAGCTACTATGCGTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAA-TTAGGTCACA
* * * ** *
51374399 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATTAGGTCACA
*
51374449 TGTGTAGTACTAAGTGCAAGCTACTACGTGGACCGGATAATT-GGTCACA
1 TGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATTAGGTCACA
* * *
51374498 TGTGTAGTACTAAGTGCAAGCTACTATGCGTACCAGATAA
1 TGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAA
51374538 CTTTGGCTAC
Statistics
Matches: 158, Mismatches: 30, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
49 76 0.48
50 46 0.29
51 36 0.23
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATTAGGTCACA
Found at i:51376445 original size:19 final size:18
Alignment explanation
Indices: 51376402--51376448 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
51376392 AGGAATTATA
*
51376402 AAATAAAA-AAATAAATG
1 AAATAAAATAAAAAAATG
* *
51376419 AAACAAAATAAAAAGAATT
1 AAATAAAATAAAAA-AATG
51376438 AAATAAAATAA
1 AAATAAAATAA
51376449 CGTAAAAATA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
17 7 0.29
18 4 0.17
19 13 0.54
ACGTcount: A:0.77, C:0.02, G:0.04, T:0.17
Consensus pattern (18 bp):
AAATAAAATAAAAAAATG
Found at i:51386597 original size:40 final size:40
Alignment explanation
Indices: 51386553--51386814 Score: 328
Period size: 39 Copynumber: 6.7 Consensus size: 40
51386543 GCTCCTCGTT
* *
51386553 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
51386593 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
*
51386633 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
51386672 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
51386711 CAAATGCCTTCGGGA-TTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
51386750 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
51386791 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
51386815 CATCATTCAA
Statistics
Matches: 202, Mismatches: 11, Indels: 19
0.87 0.05 0.08
Matches are distributed among these distances:
38 3 0.01
39 125 0.62
40 63 0.31
41 11 0.05
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:51386808 original size:118 final size:119
Alignment explanation
Indices: 51386553--51386814 Score: 335
Period size: 118 Copynumber: 2.2 Consensus size: 119
51386543 GCTCCTCGTT
* *
51386553 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
*
51386617 GATTTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGTA
66 GAATTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTC-TA
*
51386672 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTCGGGA-TTAGCCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAAT-TCGCACAAATGCCTTCGGGACTTAACCC
* * *
51386733 GGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CT-TA
65 GGAATTAGTAACTCGCACAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATCTCTA
51386788 GCACAA-GCCTTCGGGACTTAGCCCGGA
1 -CA-AATGCCTTCGGGACTTAGCCCGGA
51386815 CATCATTCAA
Statistics
Matches: 128, Mismatches: 7, Indels: 17
0.84 0.05 0.11
Matches are distributed among these distances:
116 2 0.02
117 47 0.37
118 60 0.47
119 19 0.15
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (119 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
GAATTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCTA
Found at i:51403122 original size:79 final size:82
Alignment explanation
Indices: 51403011--51403195 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
51403001 TCTCCTCGTT
* *
51403011 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
51403074 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* * **
51403091 CAAATGCCTTCGGG-CTTAACCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
51403154 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
51403171 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
51403196 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.60
80 33 0.37
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:51403195 original size:40 final size:40
Alignment explanation
Indices: 51403011--51403195 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
51403001 TCTCCTCGTT
* *
51403011 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
51403051 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
51403091 CAAATGCCTTCGGG-CTTAACCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
51403130 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
51403171 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
51403196 CATCATTCAA
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.02
39 33 0.26
40 79 0.63
41 12 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:51404999 original size:79 final size:81
Alignment explanation
Indices: 51404899--51405082 Score: 207
Period size: 79 Copynumber: 2.3 Consensus size: 81
51404889 GCTCCTCGTT
* * *
51404899 CAAATGCCTTCGAGACATAGCCCGGTTA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCG-GGCTTAGCCCGGTAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
51404962 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* * **
51404979 CAAATGCCTTCGGGCTTAGCCC-GTAATTAGTATCTCGTACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
51405043 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
51405059 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG
51405083 ACATCATTCA
Statistics
Matches: 88, Mismatches: 11, Indels: 9
0.81 0.10 0.08
Matches are distributed among these distances:
78 6 0.07
79 53 0.60
80 28 0.32
81 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (81 bp):
CAAATGCCTTCGGGCTTAGCCCGGTAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:51405083 original size:40 final size:40
Alignment explanation
Indices: 51404899--51405083 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
51404889 GCTCCTCGTT
* * *
51404899 CAAATGCCTTCGAGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
51404939 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
51404979 CAAATGCCTTCGGG-CTTAGCCCGTA-ATTAGTATCTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
51405018 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
51405059 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
51405084 CATCATTCAA
Statistics
Matches: 121, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 78 0.64
41 11 0.09
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:51407397 original size:32 final size:32
Alignment explanation
Indices: 51407356--51407426 Score: 81
Period size: 32 Copynumber: 2.2 Consensus size: 32
51407346 TTTATTCAAG
* *
51407356 TTTCACATCTCA-ATTCATTATTTCATATTTCA
1 TTTCACATCTCATAATCATT-TCTCATATTTCA
*
51407388 TTTCTCATCTCATAATCATTTCTCATATTTGTCA
1 TTTCACATCTCATAATCATTTCTCATA-TT-TCA
51407422 TTTCA
1 TTTCA
51407427 ATATTTTCTC
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
32 17 0.53
33 8 0.25
34 7 0.22
ACGTcount: A:0.25, C:0.23, G:0.01, T:0.51
Consensus pattern (32 bp):
TTTCACATCTCATAATCATTTCTCATATTTCA
Found at i:51407441 original size:43 final size:43
Alignment explanation
Indices: 51407388--51407473 Score: 136
Period size: 43 Copynumber: 2.0 Consensus size: 43
51407378 TCATATTTCA
51407388 TTTCTCATCTCATAATCATTTCTCATATTTGTCATTTCAATAT
1 TTTCTCATCTCATAATCATTTCTCATATTTGTCATTTCAATAT
* * * *
51407431 TTTCTCATCTCATATTTATTTCTCATCTTTGTCATTTTAATAT
1 TTTCTCATCTCATAATCATTTCTCATATTTGTCATTTCAATAT
51407474 CAATCACATA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.23, C:0.20, G:0.02, T:0.55
Consensus pattern (43 bp):
TTTCTCATCTCATAATCATTTCTCATATTTGTCATTTCAATAT
Found at i:51408629 original size:23 final size:23
Alignment explanation
Indices: 51408588--51408632 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
51408578 GTGTCATGAG
*
51408588 TTTCTTTTCCCTTTCTTTCTTTC
1 TTTCTTTTCCCTTTATTTCTTTC
**
51408611 TTTCTTTTCTTTTTATTTCTTT
1 TTTCTTTTCCCTTTATTTCTTT
51408633 TCGAATTTGC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76
Consensus pattern (23 bp):
TTTCTTTTCCCTTTATTTCTTTC
Found at i:51413363 original size:39 final size:39
Alignment explanation
Indices: 51413320--51413520 Score: 267
Period size: 39 Copynumber: 5.2 Consensus size: 39
51413310 GGAGTATCGG
* * * *
51413320 AGTACAACAAGGGCATGTAATTGCGTTCAGGGGTACCAA
1 AGTACAACAGGGGCACGTAAGTGCATTCAGGGGTACCAA
* * *
51413359 AGTACAACAGGGGCACGTAAGTGCATCCAGGGATACCGA
1 AGTACAACAGGGGCACGTAAGTGCATTCAGGGGTACCAA
* *
51413398 AGTACAACAGGGGCATGTAAGTGCATTCAGGGGTCCCAA
1 AGTACAACAGGGGCACGTAAGTGCATTCAGGGGTACCAA
* ** * *
51413437 AGTACAATAACGACACGTAAGTGCATTCAGGGGTACCAC
1 AGTACAACAGGGGCACGTAAGTGCATTCAGGGGTACCAA
*
51413476 AGTACAACAGGGGCACGTAAGTGCATTCAGGGGTACCGA
1 AGTACAACAGGGGCACGTAAGTGCATTCAGGGGTACCAA
51413515 AGTACA
1 AGTACA
51413521 TTAGTTTTCC
Statistics
Matches: 137, Mismatches: 25, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 137 1.00
ACGTcount: A:0.33, C:0.21, G:0.29, T:0.17
Consensus pattern (39 bp):
AGTACAACAGGGGCACGTAAGTGCATTCAGGGGTACCAA
Found at i:51413369 original size:19 final size:19
Alignment explanation
Indices: 51413347--51413410 Score: 56
Period size: 19 Copynumber: 3.3 Consensus size: 19
51413337 TAATTGCGTT
51413347 CAGGGGTACCAAAGTACAA
1 CAGGGGTACCAAAGTACAA
* ** * *
51413366 CAGGGGCACGTAAGTGCATC
1 CAGGGGTACCAAAGTACA-A
* *
51413386 CAGGGATACCGAAGTACAA
1 CAGGGGTACCAAAGTACAA
51413405 CAGGGG
1 CAGGGG
51413411 CATGTAAGTG
Statistics
Matches: 32, Mismatches: 12, Indels: 2
0.70 0.26 0.04
Matches are distributed among these distances:
19 19 0.59
20 13 0.41
ACGTcount: A:0.34, C:0.22, G:0.33, T:0.11
Consensus pattern (19 bp):
CAGGGGTACCAAAGTACAA
Found at i:51413508 original size:20 final size:20
Alignment explanation
Indices: 51413366--51413508 Score: 64
Period size: 20 Copynumber: 7.3 Consensus size: 20
51413356 CAAAGTACAA
*
51413366 CAGGGGCACGTAAGTGCATC
1 CAGGGGCACGTAAGTGCATT
** * *
51413386 CAGGGATACCG-AAGTACA-A
1 CAGGGGCA-CGTAAGTGCATT
*
51413405 CAGGGGCATGTAAGTGCATT
1 CAGGGGCACGTAAGTGCATT
** * *
51413425 CAGGGGTC-CCAAAGTACAAT
1 CAGGGG-CACGTAAGTGCATT
** *
51413445 -AACGACACGTAAGTGCATT
1 CAGGGGCACGTAAGTGCATT
* * * *
51413464 CAGGGGTAC-CACAGTACA-A
1 CAGGGGCACGTA-AGTGCATT
51413483 CAGGGGCACGTAAGTGCATT
1 CAGGGGCACGTAAGTGCATT
51413503 CAGGGG
1 CAGGGG
51413509 TACCGAAGTA
Statistics
Matches: 82, Mismatches: 32, Indels: 18
0.62 0.24 0.14
Matches are distributed among these distances:
18 2 0.02
19 36 0.44
20 41 0.50
21 3 0.04
ACGTcount: A:0.31, C:0.22, G:0.31, T:0.16
Consensus pattern (20 bp):
CAGGGGCACGTAAGTGCATT
Found at i:51413517 original size:20 final size:20
Alignment explanation
Indices: 51413455--51413522 Score: 61
Period size: 20 Copynumber: 3.5 Consensus size: 20
51413445 AACGACACGT
*
51413455 AAGTGCATTCAGGGGTACC-
1 AAGTACATTCAGGGGTACCG
* *
51413474 ACAGTACA-ACAGGGGCA-CG
1 A-AGTACATTCAGGGGTACCG
*
51413493 TAAGTGCATTCAGGGGTACCG
1 -AAGTACATTCAGGGGTACCG
51413514 AAGTACATT
1 AAGTACATT
51413523 AGTTTTCCAC
Statistics
Matches: 37, Mismatches: 7, Indels: 9
0.70 0.13 0.17
Matches are distributed among these distances:
18 1 0.03
19 13 0.35
20 21 0.57
21 2 0.05
ACGTcount: A:0.31, C:0.21, G:0.29, T:0.19
Consensus pattern (20 bp):
AAGTACATTCAGGGGTACCG
Found at i:51419362 original size:16 final size:17
Alignment explanation
Indices: 51419330--51419364 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
51419320 TAATACATGA
*
51419330 AATAATATATTAAAAGT
1 AATAATATATGAAAAGT
51419347 AATAATATA-GAAAAGT
1 AATAATATATGAAAAGT
51419363 AA
1 AA
51419365 AAGAATTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.63, C:0.00, G:0.09, T:0.29
Consensus pattern (17 bp):
AATAATATATGAAAAGT
Found at i:51421701 original size:40 final size:40
Alignment explanation
Indices: 51421656--51422085 Score: 752
Period size: 40 Copynumber: 10.8 Consensus size: 40
51421646 CAAGCTCAAT
* * * *
51421656 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
* *
51421696 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
*
51421736 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
*
51421776 TGCCTTCGGGTTTTAGCCCGGATATATCAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
*
51421816 TGCCTTCGGGTTTTAGCCCGGATATATCAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
*
51421856 TGCCTTCGGGTTTTAGCCCGGATATATCAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
51421896 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
51421936 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
*
51421976 TACCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
*
51422016 TGCCTTCGGGTTTTAGCCCGGATATATCAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
51422056 TGCCTTCGGGTCTTAGCCCGGATATATCAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAA
51422086 TTGCTCATGC
Statistics
Matches: 376, Mismatches: 14, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 376 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.27
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
Found at i:51423404 original size:14 final size:14
Alignment explanation
Indices: 51423373--51423412 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 14
51423363 AAGGATGAAG
51423373 CCTTT-TTTTT-TT
1 CCTTTCTTTTTATT
51423385 CCTTTCTTTTTATT
1 CCTTTCTTTTTATT
*
51423399 CTTTTC-TTTTATT
1 CCTTTCTTTTTATT
51423412 C
1 C
51423413 ATTAAATCCC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
12 5 0.20
13 13 0.52
14 7 0.28
ACGTcount: A:0.05, C:0.20, G:0.00, T:0.75
Consensus pattern (14 bp):
CCTTTCTTTTTATT
Found at i:51430001 original size:40 final size:40
Alignment explanation
Indices: 51429956--51430305 Score: 601
Period size: 40 Copynumber: 8.8 Consensus size: 40
51429946 CAAGCTCAAT
* * * *
51429956 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
* *
51429996 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
* *
51430036 TGCCTTCGGGTCTTAGCCCAGATATATCAACTTGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
*
51430076 TGCCTTCGGGTTTTAGCCCGGATATATCAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
*
51430116 TGCCTTCGGGTTTTAGCCCGGATATATCAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
51430156 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
51430196 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
*
51430236 TGCCTTCGGGTTTTAGCCCGGATATATCAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
51430276 TGCCTTCGGGTCTTAGCCCGGATATATCAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAA
51430306 TTGCTCATGC
Statistics
Matches: 296, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 296 1.00
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
Found at i:51431617 original size:15 final size:14
Alignment explanation
Indices: 51431593--51431635 Score: 52
Period size: 15 Copynumber: 3.1 Consensus size: 14
51431583 AAGGATGAAG
*
51431593 CCTTTTTTTTTATTT
1 CCTTTCTTTTTA-TT
51431608 CCTTTCTTTTTATT
1 CCTTTCTTTTTATT
*
51431622 CTTTTC-TTTTATT
1 CCTTTCTTTTTATT
51431635 C
1 C
51431636 ATTAAATCCC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
13 8 0.31
14 7 0.27
15 11 0.42
ACGTcount: A:0.07, C:0.19, G:0.00, T:0.74
Consensus pattern (14 bp):
CCTTTCTTTTTATT
Found at i:51431627 original size:14 final size:14
Alignment explanation
Indices: 51431594--51431635 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
51431584 AGGATGAAGC
51431594 CTTTT-TTTTTATTT
1 CTTTTCTTTTTA-TT
*
51431608 CCTTTCTTTTTATT
1 CTTTTCTTTTTATT
51431622 CTTTTC-TTTTATT
1 CTTTTCTTTTTATT
51431635 C
1 C
51431636 ATTAAATCCC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.32
14 11 0.44
15 6 0.24
ACGTcount: A:0.07, C:0.17, G:0.00, T:0.76
Consensus pattern (14 bp):
CTTTTCTTTTTATT
Found at i:51433233 original size:206 final size:206
Alignment explanation
Indices: 51432891--51434039 Score: 1631
Period size: 206 Copynumber: 5.6 Consensus size: 206
51432881 TTTGTTTCCA
* *
51432891 GACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACGTGAAAACCAAATCAG
1 GACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCACGCGAAAACCAAATCAG
*
51432956 CTATGTCTTCGATTTGCTCCTTGTAAGCATAAGGATACCAAACCATCTTGGATCTGCTTCAGTCT
66 CTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTGGATCTGCTTCAGTCT
* *
51433021 AATCATCTGAAGGTTAGATCTGCTATGTGCCTGCCCTCCATCGAATATGGAGACGCCAATA-TTT
131 AATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGACGCCAA-ACTTT
51433085 GATTTGTTCTCT
195 GATTTGTTCTCT
* *
51433097 GACAACACAGAGATTCCAAATCATCTTAGACTTGCTTCAGCGTAAGCACGCGAAAACCAAATCAG
1 GACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCACGCGAAAACCAAATCAG
*
51433162 CTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTGGATCTGCTTGAGTCT
66 CTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTGGATCTGCTTCAGTCT
*
51433227 AATCATCTGAAGGTTAGATCTGCTATGTGTCTACCCTCCGTCGAATATGGAGACGCCAAACTTTG
131 AATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGACGCCAAACTTTG
*
51433292 ATTTGTTCTAT
196 ATTTGTTCTCT
* *
51433303 GACAATACAAAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCACGCGAAATCCAAATCAG
1 GACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCACGCGAAAACCAAATCAG
* * * *
51433368 CTATGTCTTCGATTTGCTCATTGTAACCATAAGGATACCAAACCATCTTGGATCTGCTTCAGTCC
66 CTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTGGATCTGCTTCAGTCT
* *
51433433 AATCATCTGAAGGTTAGATCTGTTATGTGTCTGCCCTTTCC--CGAATATGGAGACGCAAAACTT
131 AATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCC--TCCGTCGAATATGGAGACGCCAAACTT
* *
51433496 CGATTTGTTTTCT
194 TGATTTGTTCTCT
* * * * * * * * * *
51433509 AAAAATACCGAGATGCCAAAATCATCTTAAATTTGTTTCATCGTAAGCACGTGAAAGCCAAATTA
1 GACAATACAGAGATGCC-AAATCATCTTAGACTTGCTTCAGCGTAAGCACGCGAAAACCAAATCA
* * * *
51433574 GCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATACCAAATCATCTCGGATCTGC-T---TC
65 GCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTGGATCTGCTTCAGTC
** * * * *
51433635 --AT-A--TGAA-GCCAGATCTGCTATGTGTCTGCTCTCTGTCGAATTTGGAGACGCCAAACTTC
130 TAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGACGCCAAACTTT
51433694 GATTTGTTCTCT
195 GATTTGTTCTCT
51433706 GACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCACGCGAAAACCAAATCAG
1 GACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCACGCGAAAACCAAATCAG
* * * *
51433771 CTATCTCTTCAATTTGCTTCTTGTAAGCACAAGGATACCAAACCATCTTGGATCTGCTTCAGTAT
66 CTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTGGATCTGCTTCAGTCT
* * * * *
51433836 AAACATATGAAGGCTAGATCTGCTATGTGTCTGCTCTTCGTCGAATATGGAGACGCCAAACTTTG
131 AATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGACGCCAAACTTTG
51433901 ATTTGTTCTCT
196 ATTTGTTCTCT
* * * * * * *
51433912 GACAATACAGAGATGCCAAATCATCTTAGATTTTCTTCATCGCAAGCACGTGAAAGCCAAATTAG
1 GACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCACGCGAAAACCAAATCAG
* * *
51433977 CCATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTTGCTTCAG
66 CTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTGGATC-TGCTTCAG
51434040 CTAGATCTGC
Statistics
Matches: 839, Mismatches: 87, Indels: 33
0.87 0.09 0.03
Matches are distributed among these distances:
195 2 0.00
196 91 0.11
197 67 0.08
198 4 0.00
200 2 0.00
201 2 0.00
202 1 0.00
203 3 0.00
205 5 0.01
206 559 0.67
207 100 0.12
208 3 0.00
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (206 bp):
GACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCACGCGAAAACCAAATCAG
CTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTGGATCTGCTTCAGTCT
AATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGACGCCAAACTTTG
ATTTGTTCTCT
Found at i:51442568 original size:48 final size:48
Alignment explanation
Indices: 51442394--51442622 Score: 232
Period size: 48 Copynumber: 4.8 Consensus size: 48
51442384 CATAGGGTAT
* * * *
51442394 AATGCTGATGCCATGTCCGAGACATGGTCTTACACT-GACTATCAAAATC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCTC-ATATC
* * * *
51442443 GAGGCCGACGCCATGTCCCAGACATGGTCTTATACTAGCTCTCACATATC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT--CATATC
** * * *
51442493 CGTACCGATGCCATGTCCCAGACATGGTCTTATACTAGCTCTCATCTC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATC
* * *
51442541 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTGATAAC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATC
*
51442589 -ATAGCCGATG-CATGTCCTAGACAT-GTCTTACACT
1 AAT-GCCGATGCCATGTCCCAGACATGGTCTTACACT
51442623 GGCACACAAA
Statistics
Matches: 153, Mismatches: 23, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
46 10 0.07
47 15 0.10
48 52 0.34
49 33 0.22
50 42 0.27
51 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (48 bp):
AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATC
Found at i:51442570 original size:98 final size:99
Alignment explanation
Indices: 51442400--51442623 Score: 255
Period size: 98 Copynumber: 2.3 Consensus size: 99
51442390 GTATAATGCT
* *
51442400 GATGCCATGTCCGAGACATGGTCTTACACTGACTATCAAAATCGAGGCCGACGCCATGTCCCAGA
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAAATCAAGGCCGACGCCATGTCCCAGA
*
51442465 CATGGTCTTATACTAGCTCTCACATATCCGTACC
66 CATGGTCTTACACTAGCTCTCACATATCCGTACC
* * ** * *
51442499 GATGCCATGTCCCAGACATGGTCTTATACT-AGCTCTC-ATCTCAATGCCGATGCCATGTCCCAG
1 GATGCCATGTCCCAGACATGGTCTTACACTGA-CTATCAAAATCAAGGCCGACGCCATGTCCCAG
* * * *
51442562 ACATGGTCTTACACTGGCTCT--GATA-ACATAGCC
65 ACATGGTCTTACACTAGCTCTCACATATCCGTA-CC
*
51442595 GATG-CATGTCCTAGACAT-GTCTTACACTG
1 GATGCCATGTCCCAGACATGGTCTTACACTG
51442624 GCACACAAAT
Statistics
Matches: 107, Mismatches: 15, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
94 9 0.08
95 16 0.15
96 9 0.08
98 41 0.38
99 32 0.30
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.26
Consensus pattern (99 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAAATCAAGGCCGACGCCATGTCCCAGA
CATGGTCTTACACTAGCTCTCACATATCCGTACC
Found at i:51445040 original size:46 final size:48
Alignment explanation
Indices: 51444953--51445218 Score: 232
Period size: 46 Copynumber: 5.7 Consensus size: 48
51444943 GTTATTGTGA
* * * *
51444953 GCTAGTGTAAGACCATGGCTGAGACATGGCATCGGCATTGAGACGAGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGATGAGT
* *
51445001 GCTAGTGTAAGA-CATGTTTGGGACAT-GCATCGGCCTTGAGATGTA-A
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGATG-AGT
* * * *
51445047 GCCACTGTAAGA-CATGTCTGGGACAT-GCATCGG-CTACGAGATGTGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-TGAGATGAGT
* **
51445093 -C-AGTGTAAGACCATGTCTGGGACATGGCATCGACCTTGATTTTGA-T
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGA-GATGAGT
** **
51445139 AATCAGTGTAAGACCATGTCTGGGACATGGCATC-AACTTGATGGATGA--
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGA--GATGAGT
*
51445187 GCCAGTGTAAGACCATGTCTGGGACATGGCAT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCAT
51445219 TGATATTATA
Statistics
Matches: 181, Mismatches: 26, Indels: 23
0.79 0.11 0.10
Matches are distributed among these distances:
44 8 0.04
45 17 0.09
46 60 0.33
47 45 0.25
48 18 0.10
49 33 0.18
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGATGAGT
Found at i:51445155 original size:49 final size:47
Alignment explanation
Indices: 51445092--51445218 Score: 184
Period size: 49 Copynumber: 2.7 Consensus size: 47
51445082 ACGAGATGTG
* *
51445092 TCAGTGTAAGACCATGTCTGGGACATGGCATCGACCTTGATTTTGAT-AA
1 TCAGTGTAAGACCATGTCTGGGACATGGCATC-AACTTGA--TGGATGAA
*
51445141 TCAGTGTAAGACCATGTCTGGGACATGGCATCAACTTGATGGATGAG
1 TCAGTGTAAGACCATGTCTGGGACATGGCATCAACTTGATGGATGAA
*
51445188 CCAGTGTAAGACCATGTCTGGGACATGGCAT
1 TCAGTGTAAGACCATGTCTGGGACATGGCAT
51445219 TGATATTATA
Statistics
Matches: 73, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
46 4 0.05
47 31 0.42
48 6 0.08
49 32 0.44
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.27
Consensus pattern (47 bp):
TCAGTGTAAGACCATGTCTGGGACATGGCATCAACTTGATGGATGAA
Found at i:51445203 original size:96 final size:95
Alignment explanation
Indices: 51444956--51445218 Score: 292
Period size: 96 Copynumber: 2.8 Consensus size: 95
51444946 ATTGTGAGCT
* * * *
51444956 AGTGTAAGACCATGGCTGAGACATGGCATCGGCATTGAGACGA-GTGCTAGTGTAAGA-CATGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-TTGAGA-GATGTGCCAGTGTAAGACCATGTC
*
51445019 TGGGACAT-GCATCGGCCTTGAGATGTAAGCC
64 TGGGACATGGCATCGACCTTGAGATGTAAGCC
* *
51445050 ACTGTAAGA-CATGTCTGGGACAT-GCATCGGC-T-ACGAGATGTGTCAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGA-GAGATGTGCCAGTGTAAGACCATGTCT
** *
51445111 GGGACATGGCATCGACCTTGATTTTGATAA-TC
65 GGGACATGGCATCGACCTTGA-GATG-TAAGCC
** *
51445143 AGTGTAAGACCATGTCTGGGACATGGCATCAACTTGATG-GATGAGCCAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGA-GAGATGTGCCAGTGTAAGACCATGTCT
51445207 GGGACATGGCAT
65 GGGACATGGCAT
51445219 TGATATTATA
Statistics
Matches: 143, Mismatches: 16, Indels: 18
0.81 0.09 0.10
Matches are distributed among these distances:
89 3 0.02
90 15 0.10
91 13 0.09
92 20 0.14
93 23 0.16
94 25 0.17
95 6 0.04
96 36 0.25
97 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.25
Consensus pattern (95 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGAGAGATGTGCCAGTGTAAGACCATGTCTG
GGACATGGCATCGACCTTGAGATGTAAGCC
Found at i:51450337 original size:663 final size:643
Alignment explanation
Indices: 51448613--51450305 Score: 1860
Period size: 649 Copynumber: 2.6 Consensus size: 643
51448603 ATAGATTTTG
* *
51448613 GTAAATAAATTTAAAGCTTTCTAAAACCTTTTATTGTTGCTCATTCTAGTCGAACATGAGATTAT
1 GTAACTAAATTTAAAGCTTTCTAAAACCTTTTATTGTTGCTCATTCTAGTCGAACGTGAGATTAT
* *
51448678 TTCTATTGTATGAAATGCGATCTTTTCATTGGC-ATGTTTTCC-TAGACAAAATGAGTTTTGTGT
66 TTCTATTGTATGAAATGCGATCTTTTCATTGTCTATGTTTTCCAT-GACAAAATGTGTTTTGTGT
* * * * *
51448741 TAAAAGAACCATGCTCCCTAAGTAGCCTAATTGAAATAGAAAACTTTG-AATTCTGGGCAAGTTG
130 TAAAAGAACCAAGCTCCCAAAGTAGCCTACTTGAAACAAAAAACTTTGAAATTCTGGGCAAGTT-
* *
51448805 TGCTAATTTT-TAAAGTTTTAAGCACCAAATATTAGGCTTTTGGTTACTCTGTTTGAT--AAAAA
194 TGC-GATTTTCT-AAGTTTTAAGC-CCAAATATTAGGCTTTTGGTTACTTTGTTTGATAAAAAAA
*
51448867 ATTATTTGTTTTAGAATTACATTTCAACTCTAAATTAATATTATTAAAACAACCTAATTTTTGAA
256 ATTA-TTGTTTTAGAATTACATTTCAACTCTAAATTAATATTATTAAAACAACCAAATTTTTGAA
* * *
51448932 AGAGCATAAAGTTTTGATAACTTAAAATGAGCCAAAAAGTCAATGAAATTCTGAAATATAGAATA
320 AGAGTATAGAGTTTTGATAACTTAAAATGAGCCAAAAAGTCAATGAGATTCTGAAATATAGAATA
*
51448997 CAATTTTTTTTATATTATTTCATTTTAATAACATTGTTGGCCAAATTATGTTTTATTAATATAAA
385 -AA--ATTTTTAT-TTATTTCATTTTAATAACATTGTTGGCCAAATTATGTTTTATTAATATAAA
* * * *
51449062 CATCATACTAAATTAATTTTTAAATTTTTTTGTTAAATTTATATATTTATATATCACAAACTTAT
446 CATAATACTAAATTAATTTTTAAAATTTTTTGTTAAACTTATATATTAATATATCACAAACTTAT
* * * * * * * *
51449127 AGATTTTCCACACTTGTTTAGTTACTTCGGAGGTTACCGAACAACCGAAAGCCCTTTGAATCAAA
511 ACATTATCAACAATTGTTTAGTTA-TGCGGAGGTTACAGAACAACCAAAAGACCTTTGAATCAAA
* * * * *
51449192 ACCACATATCAAACTTAAAATTGAATCCCCCAAATTGAAACCAAATATAAAACTCCAAACCAAAC
575 ACCACAGATAAAACATAAAACTGAA-CCCCCAAATTGAAACCAAATATAAAACTCAAAACCAAAC
**
51449257 CCTGG
639 CCTAA
* * *
51449262 GTAACTAAATTT-AAGTCTTTCTAAAACCTTTTATTGTTGGTCATTCTAGTTGAACGTGAGATGA
1 GTAACTAAATTTAAAG-CTTTCTAAAACCTTTTATTGTTGCTCATTCTAGTCGAACGTGAGATTA
* * * * *
51449326 TTTCTATTGTATGAAATACGATCTTTCCATTGT-TATGTTTTGCAAT-CCAAAATAAT-TTTTGT
65 TTTCTATTGTATGAAATGCGATCTTTTCATTGTCTATGTTTT-CCATGACAAAAT-GTGTTTTGT
* * * *
51449388 GTTAAAAGAACCTAGCAT-CGAAAGTAGCATACTTGAAACAAAAAACTTTGAAATTCTAGGCAAG
128 GTTAAAAGAACCAAGC-TCCCAAAGTAGCCTACTTGAAACAAAAAACTTTGAAATTCTGGGCAAG
* * * * *
51449452 TTTTGGCGATTTTC-AATTTTTTAAGCCACAAATTTTTGGCATTTGGTTACTCTT-TTTAATTAA
192 -TTT-GCGATTTTCTAA-GTTTTAAGCC-CAAATATTAGGCTTTTGGTTACT-TTGTTTGA-TAA
* * * *
51449515 AGAAAAATTTTCTTATTTTAAAATTACATTTCAACTCTAAATTAATATTATTAAAACCACCAAAT
251 A-AAAAA--TTATTGTTTTAGAATTACATTTCAACTCTAAATTAATATTATTAAAACAACCAAAT
* *
51449580 TTTTGAAAGAGTATAGAGTTTTGGTAACTTAAAATGAGCCAAAAAGTCAATAAGATT-TGGAAAT
313 TTTTGAAAGAGTATAGAGTTTTGATAACTTAAAATGAGCCAAAAAGTCAATGAGATTCT-GAAAT
* * * * * *
51449644 ATAGAAT--ATTTTTTTTTTATTTCATTTTAATGATATTGTTGGCCAAATTATGTTTTATTCATG
377 ATAGAATAAAATTTTTATTTATTTCATTTTAATAACATTGTTGGCCAAATTATGTTTTATTAATA
* * * *
51449707 TAAATATAATATTAAATTAATTTTTAAAATTTTTTGTTGAACTTATATATTAAAGTATATTACAA
442 TAAACATAATACTAAATTAATTTTTAAAATTTTTTGTTAAACTTATATATT-AA-TATATCACAA
* * *
51449772 ACTTATATCATTAT-AATAATTGTTTAG-T-TGC-GAGGTTACAGAACAACTAAAAGACTTTTGA
505 ACTTATA-CATTATCAACAATTGTTTAGTTATGCGGAGGTTACAGAACAACCAAAAGACCTTTGA
*
51449833 ATCAAAATCCA-AGACTAAAACATAAACCT--ACACCCCAAATTGAAACCAAATATAAAAC-CAA
569 ATCAAAA-CCACAGA-TAAAACATAAAACTGAAC-CCCCAAATTGAAACCAAATATAAAACTCAA
51449894 AACCAAAATCGTAAACTGAAACTTAA
631 AACC-AAA-C-----C-----C-TAA
* ** * * *
51449920 GTCAAAATCTCAAATTTAAAGCTTTTTAATTCCTTCTATTGTTTCTCATTCTAGTCGAACGTAAG
1 GT---AA-CT-AAATTTAAAGCTTTCTAAAACCTTTTATTGTTGCTCATTCTAGTCGAACGTGAG
* ** **
51449985 GTTATTTCTATTGTAAAAAATGTC-ATCTTTTCATT-TCTATGTTTTCCATGTTAAAATGTGTTT
61 ATTATTTCTATTGTATGAAATG-CGATCTTTTCATTGTCTATGTTTTCCATGACAAAATGTGTTT
* *
51450048 TGTATTAAGAGAACCAAGCTCCCAAAGTAGCCTACTTGAAACAAAAAACTTTGAAATTCTGGGCA
125 TGTGTTAAAAGAACCAAGCTCCCAAAGTAGCCTACTTGAAACAAAAAACTTTGAAATTCTGGGCA
* ** * *
51450113 AG-TTACGATTTTCTAAGTTTTAAGCCTTGAATCTTAGGTTTTTGGTTA-TGTTGTTTGATAAAA
190 AGTTTGCGATTTTCTAAGTTTTAAGCC-CAAATATTAGGCTTTTGGTTACT-TTGTTTGATAAAA
* *
51450176 AAAATTATTGTTTTAGAATTACATTTGAACTCTAAGTTAATATTATTAAAACAACCAAATTTTTG
253 AAAATTATTGTTTTAGAATTACATTTCAACTCTAAATTAATATTATTAAAACAACCAAATTTTTG
*
51450241 AAAGAGTATAGAGTTTTGATAACTTAAAATGAGCCAAAAAG-CCATGGAGATTCTGAAATATAGA
318 AAAGAGTATAGAGTTTTGATAACTTAAAATGAGCCAAAAAGTCAAT-GAGATTCTGAAATATAGA
51450305 A
382 A
51450306 CTGAAAAAAA
Statistics
Matches: 876, Mismatches: 114, Indels: 101
0.80 0.10 0.09
Matches are distributed among these distances:
645 7 0.01
646 30 0.03
647 35 0.04
648 18 0.02
649 235 0.27
650 61 0.07
651 33 0.04
652 6 0.01
653 1 0.00
654 6 0.01
655 116 0.13
656 113 0.13
657 2 0.00
658 8 0.01
659 7 0.01
660 36 0.04
661 6 0.01
662 8 0.01
663 144 0.16
664 4 0.00
ACGTcount: A:0.37, C:0.13, G:0.12, T:0.38
Consensus pattern (643 bp):
GTAACTAAATTTAAAGCTTTCTAAAACCTTTTATTGTTGCTCATTCTAGTCGAACGTGAGATTAT
TTCTATTGTATGAAATGCGATCTTTTCATTGTCTATGTTTTCCATGACAAAATGTGTTTTGTGTT
AAAAGAACCAAGCTCCCAAAGTAGCCTACTTGAAACAAAAAACTTTGAAATTCTGGGCAAGTTTG
CGATTTTCTAAGTTTTAAGCCCAAATATTAGGCTTTTGGTTACTTTGTTTGATAAAAAAAATTAT
TGTTTTAGAATTACATTTCAACTCTAAATTAATATTATTAAAACAACCAAATTTTTGAAAGAGTA
TAGAGTTTTGATAACTTAAAATGAGCCAAAAAGTCAATGAGATTCTGAAATATAGAATAAAATTT
TTATTTATTTCATTTTAATAACATTGTTGGCCAAATTATGTTTTATTAATATAAACATAATACTA
AATTAATTTTTAAAATTTTTTGTTAAACTTATATATTAATATATCACAAACTTATACATTATCAA
CAATTGTTTAGTTATGCGGAGGTTACAGAACAACCAAAAGACCTTTGAATCAAAACCACAGATAA
AACATAAAACTGAACCCCCAAATTGAAACCAAATATAAAACTCAAAACCAAACCCTAA
Found at i:51451888 original size:25 final size:25
Alignment explanation
Indices: 51451858--51451911 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
51451848 AAAATGAATC
51451858 TAAAACCCCAAATC-AAA-CCCTAAAT
1 TAAAA-CCCAAATCGAAATCCC-AAAT
*
51451883 TAAAACCTAAATCGAAATCCCAAAT
1 TAAAACCCAAATCGAAATCCCAAAT
51451908 TAAA
1 TAAA
51451912 GGATTTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
24 7 0.27
25 16 0.62
26 3 0.12
ACGTcount: A:0.54, C:0.26, G:0.02, T:0.19
Consensus pattern (25 bp):
TAAAACCCAAATCGAAATCCCAAAT
Found at i:51452760 original size:142 final size:143
Alignment explanation
Indices: 51452504--51452785 Score: 458
Period size: 142 Copynumber: 2.0 Consensus size: 143
51452494 AATCAAATCA
* * * * *
51452504 CCAAATCTTAGACGAATCTAAAACCCCAAACTAGACCCTAAATTTAGACCTAAGTCAAAATCCCA
1 CCAAATCGTAGACAAATCTAAAACCCCAAACTAGACACTAAATTTAAACCAAAGTCAAAATCCCA
* * **
51452569 AATTGAAACTTTCAATAGATTTGGGTAACTAAATTTCAAGCTTTCTAAAACATTC-ATTGTTGCT
66 AATTGAAACTTTCAACAGATTTGGGCAACTAAATTTCAAGCTTTCTAAAACATTCTATTGTCACT
51452633 CATTCTAGTCAAC
131 CATTCTAGTCAAC
*
51452646 CCAAATCGTAGACAAATCTAAAACCCCAAACTAGACACTAAGTTTAAACCAAAGTCAAAATCCCA
1 CCAAATCGTAGACAAATCTAAAACCCCAAACTAGACACTAAATTTAAACCAAAGTCAAAATCCCA
*
51452711 AATTGAAGCTTTCAACAGATTTGGGCAACTAAATTTCAAGCTTTCTAAAACATTCTATTGTCACT
66 AATTGAAACTTTCAACAGATTTGGGCAACTAAATTTCAAGCTTTCTAAAACATTCTATTGTCACT
51452776 CATTCTAGTC
131 CATTCTAGTC
51452786 GACGTGAGAT
Statistics
Matches: 128, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
142 111 0.87
143 17 0.13
ACGTcount: A:0.39, C:0.23, G:0.10, T:0.28
Consensus pattern (143 bp):
CCAAATCGTAGACAAATCTAAAACCCCAAACTAGACACTAAATTTAAACCAAAGTCAAAATCCCA
AATTGAAACTTTCAACAGATTTGGGCAACTAAATTTCAAGCTTTCTAAAACATTCTATTGTCACT
CATTCTAGTCAAC
Found at i:51454932 original size:6 final size:6
Alignment explanation
Indices: 51454914--51454946 Score: 57
Period size: 6 Copynumber: 5.3 Consensus size: 6
51454904 AACTATAAAC
51454914 CCCAAA CCCCAAA CCCAAA CCCAAA CCCAAA CC
1 CCCAAA -CCCAAA CCCAAA CCCAAA CCCAAA CC
51454947 TTAAACACTA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 20 0.77
7 6 0.23
ACGTcount: A:0.45, C:0.55, G:0.00, T:0.00
Consensus pattern (6 bp):
CCCAAA
Found at i:51454952 original size:13 final size:13
Alignment explanation
Indices: 51454914--51454952 Score: 53
Period size: 12 Copynumber: 3.1 Consensus size: 13
51454904 AACTATAAAC
*
51454914 CCCAAACCCCAAA
1 CCCAAACCTCAAA
51454927 CCCAAACC-CAAA
1 CCCAAACCTCAAA
*
51454939 CCCAAACCTTAAA
1 CCCAAACCTCAAA
51454952 C
1 C
51454953 ACTAAACCCT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 12 0.50
13 12 0.50
ACGTcount: A:0.46, C:0.49, G:0.00, T:0.05
Consensus pattern (13 bp):
CCCAAACCTCAAA
Found at i:51459357 original size:20 final size:20
Alignment explanation
Indices: 51459332--51459433 Score: 73
Period size: 20 Copynumber: 5.1 Consensus size: 20
51459322 ATAATGTAAA
51459332 CAGGGGCACATAAGTGCAAT
1 CAGGGGCACATAAGTGCAAT
* ** * *
51459352 CAGGGGTACCGAAGTACAAA
1 CAGGGGCACATAAGTGCAAT
* *
51459372 CAGGGGCACGTATGTGCAAT
1 CAGGGGCACATAAGTGCAAT
* *
51459392 CAGGGGTAC-TGAAGTACAAAT
1 CAGGGGCACAT-AAGTGC-AAT
* *
51459413 -AGTGGCACATATGTGCAAT
1 CAGGGGCACATAAGTGCAAT
51459432 CA
1 CA
51459434 AGGTATAGTT
Statistics
Matches: 60, Mismatches: 18, Indels: 8
0.70 0.21 0.09
Matches are distributed among these distances:
19 4 0.07
20 52 0.87
21 4 0.07
ACGTcount: A:0.34, C:0.19, G:0.29, T:0.18
Consensus pattern (20 bp):
CAGGGGCACATAAGTGCAAT
Found at i:51459389 original size:40 final size:40
Alignment explanation
Indices: 51459329--51459433 Score: 165
Period size: 40 Copynumber: 2.6 Consensus size: 40
51459319 ACCATAATGT
*
51459329 AAACAGGGGCACATAAGTGCAATCAGGGGTACCGAAGTAC
1 AAACAGGGGCACATATGTGCAATCAGGGGTACCGAAGTAC
* *
51459369 AAACAGGGGCACGTATGTGCAATCAGGGGTACTGAAGTAC
1 AAACAGGGGCACATATGTGCAATCAGGGGTACCGAAGTAC
* *
51459409 AAATAGTGGCACATATGTGCAATCA
1 AAACAGGGGCACATATGTGCAATCA
51459434 AGGTATAGTT
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.36, C:0.18, G:0.29, T:0.17
Consensus pattern (40 bp):
AAACAGGGGCACATATGTGCAATCAGGGGTACCGAAGTAC
Found at i:51461424 original size:5 final size:5
Alignment explanation
Indices: 51461414--51461473 Score: 50
Period size: 5 Copynumber: 11.6 Consensus size: 5
51461404 TATTTATTTC
* * * *
51461414 TTATT TTATT TTACTT CTATT CTGA-T TTATT TTATT TTGTCT TTCTT
1 TTATT TTATT TTA-TT TTATT -TTATT TTATT TTATT TTAT-T TTATT
51461461 TTATT TTATT TTA
1 TTATT TTATT TTA
51461474 GTATTTTTTC
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
4 2 0.05
5 33 0.75
6 9 0.20
ACGTcount: A:0.17, C:0.08, G:0.03, T:0.72
Consensus pattern (5 bp):
TTATT
Found at i:51461443 original size:26 final size:22
Alignment explanation
Indices: 51461414--51461475 Score: 72
Period size: 21 Copynumber: 2.7 Consensus size: 22
51461404 TATTTATTTC
*
51461414 TTATTTTATTTTACTTCTATTCTGAT
1 TTATTTTATTTTA-GTCT-TTCT--T
51461440 TTATTTTATTTT-GTCTTTCTT
1 TTATTTTATTTTAGTCTTTCTT
51461461 TTATTTTATTTTAGT
1 TTATTTTATTTTAGT
51461476 ATTTTTTCTT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
21 13 0.38
22 2 0.06
23 4 0.12
24 3 0.09
26 12 0.35
ACGTcount: A:0.16, C:0.08, G:0.05, T:0.71
Consensus pattern (22 bp):
TTATTTTATTTTAGTCTTTCTT
Found at i:51461485 original size:29 final size:29
Alignment explanation
Indices: 51461446--51461507 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 29
51461436 TGATTTATTT
51461446 TATTTTGTCTTTCTTTTATT-TTATT-TTAG
1 TATTTTGTC-TTCTTTT-TTCTTATTATTAG
* *
51461475 TATTTTTTCTTCTTTTTTCTTATTATTAT
1 TATTTTGTCTTCTTTTTTCTTATTATTAG
51461504 TATT
1 TATT
51461508 CAATGTTATT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 2 0.07
28 12 0.41
29 15 0.52
ACGTcount: A:0.15, C:0.08, G:0.03, T:0.74
Consensus pattern (29 bp):
TATTTTGTCTTCTTTTTTCTTATTATTAG
Found at i:51464482 original size:82 final size:82
Alignment explanation
Indices: 51464309--51464606 Score: 433
Period size: 82 Copynumber: 3.6 Consensus size: 82
51464299 TCTTCGGAAT
* * *
51464309 TTAG-CCGGATATTATCAACTTGCACAATTGCCTTCGGGTCTTAGCCCGGATATATATATCAACT
1 TTAGCCCGGATA-TATCAACTCGCACAAATGCCTGCGGGTCTTAGCCCGG--ATATATATCAACT
51464373 CGCACAAATGCCTGCGGGTC
63 CGCACAAATGCCTGCGGGTC
*
51464393 TTAGCCCGGATATATCAACTCGCACAAATGCCTGCGGCTCTTAGCCCGGATATATATCAACTCGC
1 TTAGCCCGGATATATCAACTCGCACAAATGCCTGCGGGTCTTAGCCCGGATATATATCAACTCGC
*
51464458 ACAAATGCCTGCAGGTC
66 ACAAATGCCTGCGGGTC
51464475 TTAGCCCGGATATATCAACTCGCACAAATGCCTGCGGGTCTTAGCCCGG--ATATATCAACTCGC
1 TTAGCCCGGATATATCAACTCGCACAAATGCCTGCGGGTCTTAGCCCGGATATATATCAACTCGC
*
51464538 ACAAATGCCTTCGGGTC
66 ACAAATGCCTGCGGGTC
* * * * *
51464555 TTAGCCCGGATAAAATC-ACTAGCACAATTGCCTTCGGGACTTAGCCCGGATA
1 TTAGCCCGGAT-ATATCAACTCGCACAAATGCCTGCGGGTCTTAGCCCGGATA
51464607 AAATTCAAAT
Statistics
Matches: 197, Mismatches: 13, Indels: 10
0.90 0.06 0.05
Matches are distributed among these distances:
80 68 0.35
81 4 0.02
82 81 0.41
84 37 0.19
85 7 0.04
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (82 bp):
TTAGCCCGGATATATCAACTCGCACAAATGCCTGCGGGTCTTAGCCCGGATATATATCAACTCGC
ACAAATGCCTGCGGGTC
Found at i:51464542 original size:122 final size:122
Alignment explanation
Indices: 51464309--51464606 Score: 451
Period size: 122 Copynumber: 2.4 Consensus size: 122
51464299 TCTTCGGAAT
*
51464309 TTAG-CCGGATAT-TATCAACTTGCACAATTGCCTTCGGGTCTTAGCCCGGATATATATATCAAC
1 TTAGCCCGGATATATATCAACTAGCACAATTGCCTTCGGGTCTTAGCCCGG----ATATATCAAC
51464372 TCGCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTGCGGCTC
62 TCGCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTGCGGCTC
* * * *
51464433 TTAGCCCGGATATATATCAACTCGCACAAATGCCTGCAGGTCTTAGCCCGGATATATCAACTCGC
1 TTAGCCCGGATATATATCAACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGC
* *
51464498 ACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
66 ACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTGCGGCTC
* *
51464555 TTAGCCCGGATA-AAATC-ACTAGCACAATTGCCTTCGGGACTTAGCCCGGATA
1 TTAGCCCGGATATATATCAACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATA
51464607 AAATTCAAAT
Statistics
Matches: 160, Mismatches: 12, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
120 30 0.19
121 4 0.03
122 81 0.51
124 4 0.03
125 8 0.05
126 33 0.21
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (122 bp):
TTAGCCCGGATATATATCAACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGC
ACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTGCGGCTC
Found at i:51464610 original size:40 final size:41
Alignment explanation
Indices: 51464309--51464607 Score: 419
Period size: 40 Copynumber: 7.3 Consensus size: 41
51464299 TCTTCGGAAT
* * * *
51464309 TTAG-CCGGATATTATCAACTTGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATAATATCAACTCGCACAAATGCCTGCGGGTC
51464349 TTAGCCCGGATATATATATCAACTCGCACAAATGCCTGCGGGTC
1 TTAGCCCGG--ATA-ATATCAACTCGCACAAATGCCTGCGGGTC
*
51464393 TTAGCCCGGAT-ATATCAACTCGCACAAATGCCTGCGGCTC
1 TTAGCCCGGATAATATCAACTCGCACAAATGCCTGCGGGTC
*
51464433 TTAGCCCGGATATATATCAACTCGCACAAATGCCTGCAGGTC
1 TTAGCCCGGATA-ATATCAACTCGCACAAATGCCTGCGGGTC
51464475 TTAGCCCGGAT-ATATCAACTCGCACAAATGCCTGCGGGTC
1 TTAGCCCGGATAATATCAACTCGCACAAATGCCTGCGGGTC
*
51464515 TTAGCCCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAATATCAACTCGCACAAATGCCTGCGGGTC
* * * * *
51464555 TTAGCCCGGATAAAATC-ACTAGCACAATTGCCTTCGGGAC
1 TTAGCCCGGATAATATCAACTCGCACAAATGCCTGCGGGTC
51464595 TTAGCCCGGATAA
1 TTAGCCCGGATAA
51464608 AATTCAAATG
Statistics
Matches: 239, Mismatches: 13, Indels: 14
0.90 0.05 0.05
Matches are distributed among these distances:
40 154 0.64
41 8 0.03
42 40 0.17
43 3 0.01
44 34 0.14
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (41 bp):
TTAGCCCGGATAATATCAACTCGCACAAATGCCTGCGGGTC
Found at i:51470505 original size:39 final size:40
Alignment explanation
Indices: 51470301--51470523 Score: 263
Period size: 40 Copynumber: 5.6 Consensus size: 40
51470291 TTGAATGCTG
* * * * * *
51470301 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * *
51470341 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGTTATTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
51470381 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
51470421 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
51470461 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
51470500 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
51470524 TGAACGAGGA
Statistics
Matches: 164, Mismatches: 16, Indels: 7
0.88 0.09 0.04
Matches are distributed among these distances:
39 35 0.21
40 121 0.74
41 8 0.05
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:51470543 original size:79 final size:80
Alignment explanation
Indices: 51470377--51470558 Score: 224
Period size: 79 Copynumber: 2.3 Consensus size: 80
51470367 TGCGAGTTAT
* * *
51470377 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGC
** ** *
51470442 ATTCGTGCGAGTTGT
66 ATTCGAACGAGGAGC
* * *
51470457 TAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGC
*
51470521 ATTTGAACGAGGAGC
66 ATTCGAACGAGGAGC
* *
51470536 TATATCC-GGTTAAATCCCGAAGG
1 TAAATCCGGGTTAAGTCCCGAAGG
51470559 TACGTGATTT
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGC
ATTCGAACGAGGAGC
Found at i:51478408 original size:39 final size:40
Alignment explanation
Indices: 51478204--51478426 Score: 245
Period size: 40 Copynumber: 5.6 Consensus size: 40
51478194 TTGAATGCTG
* * * * * *
51478204 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
* * * *
51478244 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
51478284 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
51478324 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
51478364 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
51478403 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
51478427 TGAACGAGGA
Statistics
Matches: 161, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 35 0.22
40 118 0.73
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:51478446 original size:79 final size:80
Alignment explanation
Indices: 51478279--51478461 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
51478269 GTGCGAGATA
* * *
51478279 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
51478344 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
51478359 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
51478423 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
51478438 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
51478462 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:51480241 original size:27 final size:27
Alignment explanation
Indices: 51480211--51480281 Score: 83
Period size: 26 Copynumber: 2.7 Consensus size: 27
51480201 GGGGCAAAAT
51480211 GGTAATTTTACCCTACAAAGCTATCTC
1 GGTAATTTTACCCTACAAAGCTATCTC
* * * *
51480238 GGTAATTCTACCCTAC-AGGGTATTTC
1 GGTAATTTTACCCTACAAAGCTATCTC
51480264 GGT-ATTTCTACCCTACAA
1 GGTAATTT-TACCCTACAA
51480282 GGGTATTTCA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
25 3 0.08
26 18 0.49
27 16 0.43
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.34
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAAGCTATCTC
Found at i:51480272 original size:26 final size:27
Alignment explanation
Indices: 51480211--51480290 Score: 108
Period size: 27 Copynumber: 3.0 Consensus size: 27
51480201 GGGGCAAAAT
* * * *
51480211 GGTAATTTTACCCTACAAAGCTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
51480238 GGTAATTCTACCCTAC-AGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
51480264 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
51480291 AATAATTTTG
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 22 0.47
27 25 0.53
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:51485555 original size:29 final size:29
Alignment explanation
Indices: 51485492--51485559 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
51485482 TAATCAACCG
*
51485492 CGCACACTTAGTGCCATGCACTTTTAACT
1 CGCACACTTAGTGCCATGCACTTTCAACT
* *
51485521 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTTCAA-CT
51485550 CGCACACTTA
1 CGCACACTTA
51485560 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 5 0.15
29 29 0.85
ACGTcount: A:0.26, C:0.31, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTCAACT
Found at i:51485672 original size:174 final size:174
Alignment explanation
Indices: 51485381--51485708 Score: 584
Period size: 174 Copynumber: 1.9 Consensus size: 174
51485371 AACTCAAGGT
* *
51485381 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
51485446 GAAAATATATATTGGGTTCACACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCACACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
*
51485511 ACTTTTAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
51485555 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* *
51485620 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCACACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
*
51485685 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
51485709 TGTACAATTT
Statistics
Matches: 146, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
174 146 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCACACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:51485700 original size:29 final size:30
Alignment explanation
Indices: 51485661--51485739 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
51485651 CTTAATAATC
51485661 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
51485691 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
51485720 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
51485740 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:51517210 original size:18 final size:17
Alignment explanation
Indices: 51517182--51517216 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
51517172 ATTTTTAAGA
*
51517182 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
51517199 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
51517217 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:51517470 original size:16 final size:16
Alignment explanation
Indices: 51517449--51517487 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
51517439 TTGATTTGCT
*
51517449 ATTACACAGCTTTTCC
1 ATTACACAGCTATTCC
**
51517465 ATTACACCTCTATTCC
1 ATTACACAGCTATTCC
51517481 ATTACAC
1 ATTACAC
51517488 CTCTAATCCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.28, C:0.33, G:0.03, T:0.36
Consensus pattern (16 bp):
ATTACACAGCTATTCC
Found at i:51517488 original size:16 final size:16
Alignment explanation
Indices: 51517462--51517518 Score: 87
Period size: 16 Copynumber: 3.6 Consensus size: 16
51517452 ACACAGCTTT
* *
51517462 TCCATTACACCTCTAT
1 TCCAATACACCTCTAA
*
51517478 TCCATTACACCTCTAA
1 TCCAATACACCTCTAA
51517494 TCCAATACACCTCTAA
1 TCCAATACACCTCTAA
51517510 TCCAATACA
1 TCCAATACA
51517519 GCGAACCAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 39 1.00
ACGTcount: A:0.33, C:0.37, G:0.00, T:0.30
Consensus pattern (16 bp):
TCCAATACACCTCTAA
Found at i:51520740 original size:29 final size:29
Alignment explanation
Indices: 51520694--51520780 Score: 138
Period size: 29 Copynumber: 3.0 Consensus size: 29
51520684 ATATTCACAA
*
51520694 GGCCCCTTAGGCCCAAATCACATTTATAT
1 GGCCCTTTAGGCCCAAATCACATTTATAT
*
51520723 GGCCCTTTAGGCCAAAATCACATTTATAT
1 GGCCCTTTAGGCCCAAATCACATTTATAT
* *
51520752 GGCCCTTTAGGCCCAAACCACTTTTATAT
1 GGCCCTTTAGGCCCAAATCACATTTATAT
51520781 TCATGCTTAC
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 53 1.00
ACGTcount: A:0.28, C:0.29, G:0.14, T:0.30
Consensus pattern (29 bp):
GGCCCTTTAGGCCCAAATCACATTTATAT
Found at i:51525283 original size:29 final size:28
Alignment explanation
Indices: 51525251--51525368 Score: 155
Period size: 29 Copynumber: 4.1 Consensus size: 28
51525241 TTATATTCAC
* *
51525251 ATGATCCCTCAGGCCCAAATTACATTTAT
1 ATGA-CCCTTAGGCCCAAATCACATTTAT
*
51525280 ATGACCTTTTAGGCCCAAATCACATTTAT
1 ATGACC-CTTAGGCCCAAATCACATTTAT
*
51525309 ATGGCCCTGTAGGCCCAAATCACATTTAT
1 ATGACCCT-TAGGCCCAAATCACATTTAT
*
51525338 ATGACCCTTTAGGCCCAAATCAAATTTAT
1 ATGACCC-TTAGGCCCAAATCACATTTAT
51525367 AT
1 AT
51525369 TCATGCTCAC
Statistics
Matches: 79, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
28 3 0.04
29 75 0.95
30 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.12, T:0.31
Consensus pattern (28 bp):
ATGACCCTTAGGCCCAAATCACATTTAT
Found at i:51526811 original size:16 final size:16
Alignment explanation
Indices: 51526786--51526817 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
51526776 AAAATTGAGA
51526786 TTTCGAGATTTTTGGG
1 TTTCGAGATTTTTGGG
*
51526802 TTTCGGGATTTTTGGG
1 TTTCGAGATTTTTGGG
51526818 GCGTTACAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.09, C:0.06, G:0.34, T:0.50
Consensus pattern (16 bp):
TTTCGAGATTTTTGGG
Found at i:51529739 original size:43 final size:43
Alignment explanation
Indices: 51529690--51529840 Score: 157
Period size: 43 Copynumber: 3.5 Consensus size: 43
51529680 TATCCCAGAT
* * * *
51529690 ATGGTCTTACATGTTATCACATATCGATGCCACTGTCCTAGAT
1 ATGGTCTTACACGTAATCACATATCGATGCCAATGTCCTAGAC
* *
51529733 AGGGTCTTACACG-ATATCATATAAT-GATGCCAATGTCCTAGAC
1 ATGGTCTTACACGTA-ATCACAT-ATCGATGCCAATGTCCTAGAC
*
51529776 ATGGTCTTACACGTAATCACA-ATAC-ACTGCCAATGTCCTAGGC
1 ATGGTCTTACACGTAATCACATAT-CGA-TGCCAATGTCCTAGAC
* *
51529819 ATGGTCTTATATGTAATCACAT
1 ATGGTCTTACACGTAATCACAT
51529841 TTTGATAACC
Statistics
Matches: 90, Mismatches: 11, Indels: 13
0.79 0.10 0.11
Matches are distributed among these distances:
41 2 0.02
42 1 0.01
43 84 0.93
44 3 0.03
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.31
Consensus pattern (43 bp):
ATGGTCTTACACGTAATCACATATCGATGCCAATGTCCTAGAC
Found at i:51537405 original size:43 final size:43
Alignment explanation
Indices: 51537352--51537502 Score: 178
Period size: 43 Copynumber: 3.5 Consensus size: 43
51537342 TATCCCATGT
* * * *
51537352 ATGGTCTTACATGTTATCACATATCGATGCCATTGTCCCAGAC
1 ATGGTCTTACACGTAATCACATAACGATGCCAATGTCCCAGAC
* * * *
51537395 AGGGTCTTACACGAAATCATATAACGATGCCAATGTCCAAGAC
1 ATGGTCTTACACGTAATCACATAACGATGCCAATGTCCCAGAC
* *
51537438 ATGGTCTTACACGTAATTACA-ACACAATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATCACATA-ACGATGCCAATGTCCCAGAC
* *
51537481 ATGGTCTTATATGTAATCACAT
1 ATGGTCTTACACGTAATCACAT
51537503 CTCGATAACA
Statistics
Matches: 89, Mismatches: 17, Indels: 3
0.82 0.16 0.03
Matches are distributed among these distances:
42 1 0.01
43 88 0.99
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (43 bp):
ATGGTCTTACACGTAATCACATAACGATGCCAATGTCCCAGAC
Found at i:51538784 original size:27 final size:27
Alignment explanation
Indices: 51538743--51538796 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
51538733 TGCCATGTGA
* *
51538743 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
51538770 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
51538797 GGTTGTACCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:51547106 original size:47 final size:47
Alignment explanation
Indices: 51547019--51547186 Score: 255
Period size: 47 Copynumber: 3.6 Consensus size: 47
51547009 CCCTTCGGGA
* * * * * *
51547019 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
51547066 CCTGTTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51547113 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51547160 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
51547187 ACCAACCCTT
Statistics
Matches: 109, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 109 1.00
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:51547488 original size:39 final size:40
Alignment explanation
Indices: 51547392--51547551 Score: 134
Period size: 39 Copynumber: 4.0 Consensus size: 40
51547382 CGGAATTTAA
**
51547392 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACATAGC
* *
51547432 CCGGTTATAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAGC
* * * *
51547471 CCGGA-ATTGGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CATAGC
* * * *
51547511 CC-GATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACATAGC
51547550 CC
1 CC
51547552 AGACATCATT
Statistics
Matches: 101, Mismatches: 12, Indels: 15
0.79 0.09 0.12
Matches are distributed among these distances:
38 3 0.03
39 51 0.50
40 47 0.47
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAGC
Found at i:51551603 original size:40 final size:40
Alignment explanation
Indices: 51551559--51551777 Score: 357
Period size: 40 Copynumber: 5.5 Consensus size: 40
51551549 TCTTCGAGGT
* * * **
51551559 TTAGCACGGATATATTACTAGCACGAATGCTCTTCGAAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
*
51551599 TTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
51551639 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
*
51551679 TTAGCCCGGATATATCACTAGCACGAACGCTCCTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
* *
51551719 TTAGCCCGGATATATCACTAGCATGAATGCTCCTCGGGGC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
51551759 TTAGCCCGGATATATCACT
1 TTAGCCCGGATATATCACT
51551778 CTCAATTCTC
Statistics
Matches: 168, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 168 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
Found at i:51553291 original size:37 final size:37
Alignment explanation
Indices: 51553241--51553319 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
51553231 TTATTACGAA
* * *
51553241 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
51553278 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
51553315 GTCTT
1 GTCTT
51553320 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:51553511 original size:47 final size:47
Alignment explanation
Indices: 51553438--51553816 Score: 571
Period size: 47 Copynumber: 8.1 Consensus size: 47
51553428 CCCTTCGGGA
* ** * * * *
51553438 CTTATCACATTTACGCACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51553485 CCTGTCACATATATACACTTTCACATTCA-CACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51553531 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
51553578 CTTATTACATATATACACTTTCACATTCATCACATCAGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
51553625 CTTATCACCTATATACACTTTCACATTCATCACATCAGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51553672 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51553719 CTTTTCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51553766 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51553813 CTTA
1 CTTA
51553817 CTATCATTTC
Statistics
Matches: 308, Mismatches: 23, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
46 40 0.13
47 268 0.87
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:51558036 original size:47 final size:47
Alignment explanation
Indices: 51557949--51558116 Score: 255
Period size: 47 Copynumber: 3.6 Consensus size: 47
51557939 CCCTTCGGGA
* * * * * *
51557949 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
51557996 CCTGTTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51558043 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51558090 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
51558117 ACCAACCCTT
Statistics
Matches: 109, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 109 1.00
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:51558417 original size:39 final size:39
Alignment explanation
Indices: 51558321--51558481 Score: 159
Period size: 40 Copynumber: 4.1 Consensus size: 39
51558311 CGGAATTTAA
* ** *
51558321 CCGGATATAGCTACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATAT-GGTACTCGCACAAATGCCTTCGGGACTTAGC
* *
51558361 CCGGTTATAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATGGT-ACTCGCACAAATGCCTTCGGGACTTAGC
*
51558400 CCGGA-ATTGGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TGGTA-CTCGCACAAATGCCTTCGGGA-CTTAGC
*
51558440 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATGGT-AC-TCGCACAAATGCCTTCGGGACTTAGC
51558480 CC
1 CC
51558482 AGACATCATT
Statistics
Matches: 101, Mismatches: 11, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
38 4 0.04
39 30 0.30
40 54 0.53
41 13 0.13
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATATGGTACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:51562178 original size:69 final size:69
Alignment explanation
Indices: 51562061--51562199 Score: 224
Period size: 69 Copynumber: 2.0 Consensus size: 69
51562051 GCCTACATTT
* * *
51562061 ATCAAACATAAAGCGTTCATTCTCAAAAATCATTCAACACAATTACATTGTCCATTATAAGGGCC
1 ATCAAACATAAAGCATTCATTCTCAAAAATCATTCAACACAATCACATTGTCAATTATAAGGGCC
51562126 TACG
66 TACG
* * *
51562130 ATCAAACATAAATCATTCATTCTCATAAATCATTCAACATAATCACATTGTCAATTATAAGGGCC
1 ATCAAACATAAAGCATTCATTCTCAAAAATCATTCAACACAATCACATTGTCAATTATAAGGGCC
51562195 TACG
66 TACG
51562199 A
1 A
51562200 AGCCTTAAAC
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
69 64 1.00
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.29
Consensus pattern (69 bp):
ATCAAACATAAAGCATTCATTCTCAAAAATCATTCAACACAATCACATTGTCAATTATAAGGGCC
TACG
Found at i:51567756 original size:22 final size:21
Alignment explanation
Indices: 51567730--51567838 Score: 71
Period size: 22 Copynumber: 4.9 Consensus size: 21
51567720 TTTGTTTTAT
51567730 TTATTTGTTATTATTCTTATTC
1 TTATTT-TTATTATTCTTATTC
* *
51567752 TTATTGTTT-TTATTTGTTATATA
1 TTATT-TTTATTA-TTCTTAT-TC
*
51567775 TTAATTTTTATTA-TATTATTC
1 TT-ATTTTTATTATTCTTATTC
* *
51567796 TTTTGTTTTTCTTATTCTCT-TTAC
1 --TTATTTTTATTATTCT-TATT-C
51567820 TTATTTTTATTATTCTTAT
1 TTATTTTTATTATTCTTAT
51567839 CACTGTTATT
Statistics
Matches: 67, Mismatches: 9, Indels: 22
0.68 0.09 0.22
Matches are distributed among these distances:
21 5 0.07
22 41 0.61
23 13 0.19
24 8 0.12
ACGTcount: A:0.19, C:0.07, G:0.04, T:0.70
Consensus pattern (21 bp):
TTATTTTTATTATTCTTATTC
Found at i:51569526 original size:40 final size:40
Alignment explanation
Indices: 51569482--51569706 Score: 251
Period size: 40 Copynumber: 5.7 Consensus size: 40
51569472 GCTCCTCGTT
* * *
51569482 CAAATGCGTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
51569522 CAAATGCCTTCGGGACTTAACACGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
51569562 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
51569602 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * ** *
51569641 CAAATGCCTTC-GGATCTTAGTCCGGATATGGGCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
51569682 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
51569707 CATCATTCAA
Statistics
Matches: 161, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
38 2 0.01
39 32 0.20
40 114 0.71
41 13 0.08
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:51569667 original size:119 final size:120
Alignment explanation
Indices: 51569484--51569706 Score: 276
Period size: 119 Copynumber: 1.9 Consensus size: 120
51569474 TCCTCGTTCA
* *
51569484 AATGCGTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACACGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACACGGAT
* * *
51569549 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGGAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * *
51569604 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTC-CG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTA-ACACG
* * *
51569665 GATATGGGCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
63 GATATAGGAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
51569707 CATCATTCAA
Statistics
Matches: 88, Mismatches: 11, Indels: 9
0.81 0.10 0.08
Matches are distributed among these distances:
118 4 0.05
119 64 0.73
120 20 0.23
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACACGGAT
ATAGGAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:51577546 original size:39 final size:40
Alignment explanation
Indices: 51577429--51577613 Score: 214
Period size: 40 Copynumber: 4.7 Consensus size: 40
51577419 GCTCCTCGTT
* * * *
51577429 CAAATGCCTTTGGGACATAGCCCAGATTTATTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
51577469 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
51577509 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
51577548 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
51577589 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
51577614 CATCATTCAA
Statistics
Matches: 123, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 78 0.63
41 11 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:51577573 original size:79 final size:80
Alignment explanation
Indices: 51577431--51577613 Score: 210
Period size: 79 Copynumber: 2.3 Consensus size: 80
51577421 TCCTCGTTCA
* * * * *
51577431 AATGCCTTTGGGACATAGCCCAGATTTATTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
51577496 TTAGTAAC-TCGCACC
66 ATAGTAACTTAGCA-C
* **
51577511 AATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGA
* *
51577574 TATGGTCACTTAGCAC
65 TATAGTAACTTAGCAC
*
51577590 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
51577614 CATCATTCAA
Statistics
Matches: 87, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
78 3 0.03
79 58 0.67
80 26 0.30
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:51580440 original size:6 final size:5
Alignment explanation
Indices: 51580420--51580473 Score: 54
Period size: 6 Copynumber: 9.6 Consensus size: 5
51580410 ATTGAGTCCA
51580420 TTTAT TTTAT TTTAGT TTTAGT TTTAT TTCTATT TTTAT GTTTAT TATTAT
1 TTTAT TTTAT TTTA-T TTTA-T TTTAT TT-TA-T TTTAT -TTTAT T-TTAT
51580471 TTT
1 TTT
51580474 CTTAGACTTC
Statistics
Matches: 44, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
5 16 0.36
6 25 0.57
7 3 0.07
ACGTcount: A:0.19, C:0.02, G:0.06, T:0.74
Consensus pattern (5 bp):
TTTAT
Found at i:51580446 original size:17 final size:18
Alignment explanation
Indices: 51580420--51580462 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
51580410 ATTGAGTCCA
51580420 TTTA-TTTTATTT-TAGT
1 TTTAGTTTTATTTCTAGT
*
51580436 TTTAGTTTTATTTCTATT
1 TTTAGTTTTATTTCTAGT
51580454 TTTATGTTT
1 TTTA-GTTT
51580463 ATTATTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
16 4 0.17
17 8 0.35
18 7 0.30
19 4 0.17
ACGTcount: A:0.16, C:0.02, G:0.07, T:0.74
Consensus pattern (18 bp):
TTTAGTTTTATTTCTAGT
Found at i:51583547 original size:42 final size:42
Alignment explanation
Indices: 51583457--51583614 Score: 167
Period size: 42 Copynumber: 3.7 Consensus size: 42
51583447 GGAAAGCTCG
* * *
51583457 TACAATGCCAAT-TCCCAAACGTGGTCTTACATGTAATCAAA
1 TACAATGCCAATGTCCCAGACGTGGTCTTACACGAAATCAAA
*
51583498 TATCAATGCCACTGTCCCAGACAG-GGTCTTACACGAAATCAAA
1 TA-CAATGCCAATGTCCCAGAC-GTGGTCTTACACGAAATCAAA
* * *
51583541 TACAATGCCAATGTCTCAGACGTGATCTTACACATAAATCATAA
1 TACAATGCCAATGTCCCAGACGTGGTCTTACAC-GAAATCA-AA
* * * *
51583585 GACGATGCCAACGTCCCAGATGTGGTCTTA
1 TACAATGCCAATGTCCCAGACGTGGTCTTA
51583615 NNNNNNNNNN
Statistics
Matches: 97, Mismatches: 14, Indels: 9
0.81 0.12 0.08
Matches are distributed among these distances:
41 3 0.03
42 35 0.36
43 32 0.33
44 27 0.28
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (42 bp):
TACAATGCCAATGTCCCAGACGTGGTCTTACACGAAATCAAA
Found at i:51583614 original size:44 final size:42
Alignment explanation
Indices: 51583458--51583614 Score: 140
Period size: 43 Copynumber: 3.7 Consensus size: 42
51583448 GAAAGCTCGT
* * * * *
51583458 ACAATGCCAA-TTCCCAAACGTGGTCTTACATGTAATCAAAT
1 ACAATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAAAG
*
51583499 ATCAATGCC-ACTGTCCCAGACAG-GGTCTTACACGAAATCAAAT
1 A-CAATGCCAAC-GTCCCAGAC-GTGGTCTTACACGAAATCAAAG
* * * *
51583542 ACAATGCCAATGTCTCAGACGTGATCTTACACATAAATCATAAG
1 ACAATGCCAACGTCCCAGACGTGGTCTTACAC-GAAATCA-AAG
* *
51583586 ACGATGCCAACGTCCCAGATGTGGTCTTA
1 ACAATGCCAACGTCCCAGACGTGGTCTTA
51583615 NNNNNNNNNN
Statistics
Matches: 94, Mismatches: 14, Indels: 13
0.78 0.12 0.11
Matches are distributed among these distances:
41 3 0.03
42 31 0.33
43 33 0.35
44 27 0.29
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.24
Consensus pattern (42 bp):
ACAATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAAAG
Found at i:51594064 original size:39 final size:39
Alignment explanation
Indices: 51594001--51594112 Score: 143
Period size: 39 Copynumber: 2.8 Consensus size: 39
51593991 TGATGTGTAT
* * * *
51594001 CCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTATAC
1 CCGGACTTAAAG-TCCGCAGGCTATGTGCTGGAATTATAA
*
51594041 CCGGACTTAAAGTCCGTAGGCTATGTGCTGGAATTATAA
1 CCGGACTTAAAGTCCGCAGGCTATGTGCTGGAATTATAA
* * *
51594080 CCGGACTTAAGGTTCGCAGGCTACGTGCTGGAA
1 CCGGACTTAAAGTCCGCAGGCTATGTGCTGGAA
51594113 ATATGTCCGG
Statistics
Matches: 63, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
39 52 0.83
40 11 0.17
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGGACTTAAAGTCCGCAGGCTATGTGCTGGAATTATAA
Found at i:51598585 original size:26 final size:27
Alignment explanation
Indices: 51598483--51598575 Score: 145
Period size: 27 Copynumber: 3.5 Consensus size: 27
51598473 GCGTACTTCT
51598483 AACAATCATTTTACC-TCAT-AGGGCAA
1 AACAATCATTTTACCAT-ATAAGGGCAA
51598509 AACAATCATTTTACCATATAAGGGCAA
1 AACAATCATTTTACCATATAAGGGCAA
* *
51598536 AACAGTCATTTTACCATATAAGGGAAA
1 AACAATCATTTTACCATATAAGGGCAA
51598563 AACAATCATTTTA
1 AACAATCATTTTA
51598576 TCGATTAGGG
Statistics
Matches: 62, Mismatches: 3, Indels: 3
0.91 0.04 0.04
Matches are distributed among these distances:
26 17 0.27
27 45 0.73
ACGTcount: A:0.43, C:0.18, G:0.11, T:0.28
Consensus pattern (27 bp):
AACAATCATTTTACCATATAAGGGCAA
Found at i:51600914 original size:27 final size:28
Alignment explanation
Indices: 51600884--51600946 Score: 76
Period size: 28 Copynumber: 2.3 Consensus size: 28
51600874 GTGACAGAGT
51600884 CACCA-AATACAGATA-TTGTAGCAAAGC
1 CACCAGAA-ACAGATATTTGTAGCAAAGC
* * *
51600911 CACCAGAAATAGATATTTGTGGCAGAGC
1 CACCAGAAACAGATATTTGTAGCAAAGC
51600939 CACCAGAA
1 CACCAGAA
51600947 CGCTTCCTCC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
27 11 0.35
28 20 0.65
ACGTcount: A:0.41, C:0.22, G:0.19, T:0.17
Consensus pattern (28 bp):
CACCAGAAACAGATATTTGTAGCAAAGC
Found at i:51600940 original size:28 final size:27
Alignment explanation
Indices: 51600864--51600946 Score: 87
Period size: 27 Copynumber: 3.0 Consensus size: 27
51600854 TGGCTGCTAG
* * *
51600864 AATAAATATTGTGACAGAGTCACCA-A
1 AATAGATATTGTGGCAGAGCCACCAGA
* * *
51600890 ATACAGATATTGTAGCAAAGCCACCAGA
1 A-ATAGATATTGTGGCAGAGCCACCAGA
51600918 AATAGATATTTGTGGCAGAGCCACCAGA
1 AATAGATA-TTGTGGCAGAGCCACCAGA
51600946 A
1 A
51600947 CGCTTCCTCC
Statistics
Matches: 45, Mismatches: 9, Indels: 4
0.78 0.16 0.07
Matches are distributed among these distances:
26 1 0.02
27 24 0.53
28 20 0.44
ACGTcount: A:0.42, C:0.18, G:0.19, T:0.20
Consensus pattern (27 bp):
AATAGATATTGTGGCAGAGCCACCAGA
Found at i:51602992 original size:81 final size:81
Alignment explanation
Indices: 51602856--51603009 Score: 236
Period size: 81 Copynumber: 1.9 Consensus size: 81
51602846 TTGTCGCAGT
*
51602856 TAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAA
1 TAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACAA
51602921 ATTGAGGGTAAAATGG
66 ATTGAGGGTAAAATGG
** * *** *
51602937 TAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTACTTTGGTAATTTTACAA
1 TAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACAA
51603002 ATTGAGGG
66 ATTGAGGG
51603010 CATTTCAGTA
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 65 1.00
ACGTcount: A:0.37, C:0.08, G:0.23, T:0.32
Consensus pattern (81 bp):
TAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACAA
ATTGAGGGTAAAATGG
Found at i:51602995 original size:27 final size:27
Alignment explanation
Indices: 51602856--51602984 Score: 213
Period size: 27 Copynumber: 4.8 Consensus size: 27
51602846 TTGTCGCAGT
**
51602856 TAATTCTGTAAATCGAGGGTAAAACAG
1 TAATTCTGTAAATCGAGGGTAAAATGG
*
51602883 TAATTCTATAAATCGAGGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAATGG
* *
51602910 TAATTCTATAAATTGAGGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAATGG
51602937 TAATTCTGTAAATCGAGGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAATGG
51602964 TAATTCTGTAAATCGAGGGTA
1 TAATTCTGTAAATCGAGGGTA
51602985 CTTTGGTAAT
Statistics
Matches: 96, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 96 1.00
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (27 bp):
TAATTCTGTAAATCGAGGGTAAAATGG
Found at i:51603003 original size:27 final size:26
Alignment explanation
Indices: 51602882--51603164 Score: 147
Period size: 27 Copynumber: 10.5 Consensus size: 26
51602872 GGGTAAAACA
* **
51602882 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGT-ATTTG
* * **
51602909 GTAATTCTATAAATTGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGT-ATTTG
* * **
51602936 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGT-ATTTG
* *
51602963 GTAATTCTGTAAATCGAGGGTACTTTG
1 GTAATTTTATAAATCGAGGGTA-TTTG
* * * *
51602990 GTAATTTTACAAATTGAGGGCATTTCA
1 GTAATTTTATAAATCGAGGGTATTT-G
**
51603017 GTAATTTTAT-AATCGATAGTATTTTG
1 GTAATTTTATAAATCGAGGGTA-TTTG
* * *
51603043 GTAATTTTATAAACCGGGGGTGCTTTG
1 GTAATTTTATAAATCGAGGGT-ATTTG
* * * **
51603070 GTAATTTTACAAGTCGAAGGTATTACA
1 GTAATTTTATAAATCGAGGGTATT-TG
* * *
51603097 ATAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTATAAATCGAGGGTATTT-G
* * *
51603124 GTAATTTTACAAA-CTATAGGTATTTCG
1 GTAATTTTATAAATCGA-GGGTATTT-G
51603151 GTAATTTTAGTAAA
1 GTAATTTTA-TAAA
51603165 CTAAAGTATT
Statistics
Matches: 208, Mismatches: 39, Indels: 17
0.79 0.15 0.06
Matches are distributed among these distances:
26 25 0.12
27 180 0.87
28 3 0.01
ACGTcount: A:0.34, C:0.08, G:0.20, T:0.37
Consensus pattern (26 bp):
GTAATTTTATAAATCGAGGGTATTTG
Found at i:51603102 original size:80 final size:81
Alignment explanation
Indices: 51602961--51603137 Score: 194
Period size: 80 Copynumber: 2.2 Consensus size: 81
51602951 GAGGGTAAAA
* * * * * * *
51602961 TGGTAATTCTGTAAATCGAGGGTACTTTGGTAATTTTACAAATTGAGGGCATTTCAGTAATTTTA
1 TGGTAATTTTATAAACCGAGGGTACTTTGGTAATTTTACAAATCGAAGGCATTACAATAATTTTA
* *
51603026 -TAATCGATAGTATTT
66 CAAATCGAGAGTATTT
* * * *
51603041 TGGTAATTTTATAAACCGGGGGTGCTTTGGTAATTTTACAAGTCGAAGGTATTACAATAATTTTA
1 TGGTAATTTTATAAACCGAGGGTACTTTGGTAATTTTACAAATCGAAGGCATTACAATAATTTTA
*
51603106 CAAATCGAGGGTATTT
66 CAAATCGAGAGTATTT
** *
51603122 CAGTAATTTTACAAAC
1 TGGTAATTTTATAAAC
51603138 TATAGGTATT
Statistics
Matches: 79, Mismatches: 17, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
80 54 0.68
81 25 0.32
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (81 bp):
TGGTAATTTTATAAACCGAGGGTACTTTGGTAATTTTACAAATCGAAGGCATTACAATAATTTTA
CAAATCGAGAGTATTT
Found at i:51603156 original size:54 final size:54
Alignment explanation
Indices: 51602981--51603159 Score: 177
Period size: 54 Copynumber: 3.3 Consensus size: 54
51602971 GTAAATCGAG
* * *
51602981 GGTACTTT-GGTAATTTTACAAATTGAGGGCATTTCAGTAATTTTATAATCGATA
1 GGTA-TTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGATA
* * * * * *
51603035 -GTATTTTGGTAATTTTATAAACCGGGGGTGCTTT-GGTAATTTTACAAGTCGA-A
1 GGTATTTCGGTAATTTTACAAATCGAGGGT-ATTTCAGTAATTTTACAA-TCGATA
* ** * *
51603088 GGTATTACAATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAACTATA
1 GGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGATA
51603142 GGTATTTCGGTAATTTTA
1 GGTATTTCGGTAATTTTA
51603160 GTAAACTAAA
Statistics
Matches: 97, Mismatches: 22, Indels: 12
0.74 0.17 0.09
Matches are distributed among these distances:
52 3 0.03
53 37 0.38
54 57 0.59
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.40
Consensus pattern (54 bp):
GGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGATA
Found at i:51603173 original size:27 final size:27
Alignment explanation
Indices: 51603116--51603174 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
51603106 CAAATCGAGG
*
51603116 GTATTTCAGTAATTTTACAAACTATAG
1 GTATTTCAGTAATTTTACAAACTATAA
* *
51603143 GTATTTCGGTAATTTTAGTAAACTA-AA
1 GTATTTCAGTAATTTTA-CAAACTATAA
51603170 GTATT
1 GTATT
51603175 CTAAACAGGG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 22 0.79
28 6 0.21
ACGTcount: A:0.36, C:0.08, G:0.14, T:0.42
Consensus pattern (27 bp):
GTATTTCAGTAATTTTACAAACTATAA
Found at i:51607763 original size:28 final size:27
Alignment explanation
Indices: 51607683--51607769 Score: 95
Period size: 27 Copynumber: 3.2 Consensus size: 27
51607673 AGCATGGCTG
* *
51607683 CCAG-AATAGATATTGTGACAGAGTCA
1 CCAGAAATAGATATTGTGGCAGAGCCA
* * * *
51607709 CTAGATACAGATATTGTGGTAGAGCCA
1 CCAGAAATAGATATTGTGGCAGAGCCA
*
51607736 CCAGAAATAGATATTTGTGGCAGGGCCA
1 CCAGAAATAGATA-TTGTGGCAGAGCCA
51607764 CCAGAA
1 CCAGAA
51607770 CGCTTCCTCC
Statistics
Matches: 48, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
26 3 0.06
27 27 0.56
28 18 0.38
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (27 bp):
CCAGAAATAGATATTGTGGCAGAGCCA
Found at i:51607890 original size:29 final size:29
Alignment explanation
Indices: 51607804--51607896 Score: 143
Period size: 29 Copynumber: 3.2 Consensus size: 29
51607794 TATCCCATGC
51607804 AACAGATATACATGTCATGGTATACAACA
1 AACAGATATACATGTCATGGTATACAACA
* *
51607833 AACAGA-ATCAGAATATCATGGTATACAACA
1 AACAGATAT-A-CATGTCATGGTATACAACA
51607863 AACAGATATACATGTCATGGTATACAACA
1 AACAGATATACATGTCATGGTATACAACA
51607892 AACAG
1 AACAG
51607897 TCTCTGGATC
Statistics
Matches: 57, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
28 2 0.04
29 29 0.51
30 24 0.42
31 2 0.04
ACGTcount: A:0.47, C:0.17, G:0.14, T:0.22
Consensus pattern (29 bp):
AACAGATATACATGTCATGGTATACAACA
Found at i:51611143 original size:28 final size:27
Alignment explanation
Indices: 51611055--51611187 Score: 97
Period size: 28 Copynumber: 4.8 Consensus size: 27
51611045 TTAGGATAGC
* * *
51611055 CTTTATGGCGAACTCTGAAAAGAATAA
1 CTTTGTGGCAAACTCTGAAAAGAAAAA
** * *
51611082 CATTTGTGGTGAACTGTGAAAGGAAAAA
1 C-TTTGTGGCAAACTCTGAAAAGAAAAA
* * *
51611110 CATGTGTGGCAAACTCTGAAAAGAATAG
1 C-TTTGTGGCAAACTCTGAAAAGAAAAA
* * * *
51611138 CTTGTGCGGCAAACTTTGAAAACAAAAGC
1 CTT-TGTGGCAAACTCTGAAAAGAAAA-A
51611167 CTTTGTGGCAAACTCT-AAAAG
1 CTTTGTGGCAAACTCTGAAAAG
51611188 GGCTACCTTT
Statistics
Matches: 82, Mismatches: 21, Indels: 6
0.75 0.19 0.06
Matches are distributed among these distances:
27 6 0.07
28 73 0.89
29 3 0.04
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.24
Consensus pattern (27 bp):
CTTTGTGGCAAACTCTGAAAAGAAAAA
Found at i:51611158 original size:56 final size:56
Alignment explanation
Indices: 51611060--51611187 Score: 134
Period size: 56 Copynumber: 2.3 Consensus size: 56
51611050 ATAGCCTTTA
* * ** **
51611060 TGGCGAACTCTGAAAAGAATAACATTTGTGGTGAACTGTGAAAGGAAAAACATGTG
1 TGGCAAACTCTGAAAAGAATAACATTTGCGGCAAACTGTGAAAACAAAAACATGTG
* * * * *
51611116 TGGCAAACTCTGAAAAGAATAGC-TTGTGCGGCAAACTTTGAAAACAAAAGCCTTTG
1 TGGCAAACTCTGAAAAGAATAACATT-TGCGGCAAACTGTGAAAACAAAAACATGTG
51611172 TGGCAAACTCT-AAAAG
1 TGGCAAACTCTGAAAAG
51611188 GGCTACCTTT
Statistics
Matches: 60, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
55 7 0.12
56 53 0.88
ACGTcount: A:0.39, C:0.15, G:0.23, T:0.23
Consensus pattern (56 bp):
TGGCAAACTCTGAAAAGAATAACATTTGCGGCAAACTGTGAAAACAAAAACATGTG
Found at i:51617663 original size:43 final size:42
Alignment explanation
Indices: 51617616--51617710 Score: 111
Period size: 42 Copynumber: 2.2 Consensus size: 42
51617606 AGACGTGGTT
* *
51617616 TTACATGTAATCAAATATCGATG-CCACTGTCCCAGACAGGGTC
1 TTACACGTAATCAAATA-CGATGTCCA-TGTCCCAAACAGGGTC
** * *
51617659 TTACACAAAATCAAATACGATGTCGATGTCCCAAACATGGTC
1 TTACACGTAATCAAATACGATGTCCATGTCCCAAACAGGGTC
51617701 TTACACGTAA
1 TTACACGTAA
51617711 ATTATAACTC
Statistics
Matches: 43, Mismatches: 8, Indels: 3
0.80 0.15 0.06
Matches are distributed among these distances:
42 27 0.63
43 16 0.37
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.25
Consensus pattern (42 bp):
TTACACGTAATCAAATACGATGTCCATGTCCCAAACAGGGTC
Found at i:51617701 original size:42 final size:43
Alignment explanation
Indices: 51617624--51617706 Score: 116
Period size: 42 Copynumber: 2.0 Consensus size: 43
51617614 TTTTACATGT
*
51617624 AATCAAATATCGATGCCACTGTCCCAGACAGGGTCTTACACAA
1 AATCAAATATCGATGCCACTGTCCCAAACAGGGTCTTACACAA
* *
51617667 AATCAAATA-CGATGTCGA-TGTCCCAAACATGGTCTTACAC
1 AATCAAATATCGATG-CCACTGTCCCAAACAGGGTCTTACAC
51617707 GTAAATTATA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
42 25 0.69
43 11 0.31
ACGTcount: A:0.35, C:0.27, G:0.16, T:0.23
Consensus pattern (43 bp):
AATCAAATATCGATGCCACTGTCCCAAACAGGGTCTTACACAA
Found at i:51620817 original size:51 final size:49
Alignment explanation
Indices: 51620691--51620831 Score: 165
Period size: 51 Copynumber: 2.8 Consensus size: 49
51620681 GAAGCTATCT
* * *
51620691 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCT
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCAATAATCG
* * * * **
51620740 GGTACACGTAGTAGCCTGCACCTAGTACTACACACGTGATCACAGTTTTCG
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATAATCG
* *
51620791 GGTATGCATAGCAGCCTGCACTTAGTACTACACACGTGACC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACC
51620832 TCACAATAGT
Statistics
Matches: 76, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
49 35 0.46
50 2 0.03
51 39 0.51
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (49 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCAATAATCG
Found at i:51623330 original size:30 final size:30
Alignment explanation
Indices: 51623286--51623354 Score: 97
Period size: 30 Copynumber: 2.3 Consensus size: 30
51623276 TAAAGATAAC
* *
51623286 AAGAAAACC-GAATAAAGAAATCCAAGGTA
1 AAGAAACCCAGAATAAAGAAATCCAAGATA
51623315 GAA-AAACCCAGAATAAAGAAATCCAAGATA
1 -AAGAAACCCAGAATAAAGAAATCCAAGATA
51623345 AAGAAACCCA
1 AAGAAACCCA
51623355 AGATACGATA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
29 7 0.20
30 28 0.80
ACGTcount: A:0.59, C:0.17, G:0.14, T:0.09
Consensus pattern (30 bp):
AAGAAACCCAGAATAAAGAAATCCAAGATA
Found at i:51623347 original size:15 final size:15
Alignment explanation
Indices: 51623297--51623359 Score: 67
Period size: 15 Copynumber: 4.2 Consensus size: 15
51623287 AGAAAACCGA
51623297 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
51623312 GTAGAA-AAA-CCCAG
1 ATA-AAGAAATCCAAG
51623326 AATAAAGAAATCCAAG
1 -ATAAAGAAATCCAAG
*
51623342 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
51623357 ATA
1 ATA
51623360 CGATACTATG
Statistics
Matches: 39, Mismatches: 5, Indels: 8
0.75 0.10 0.15
Matches are distributed among these distances:
14 6 0.15
15 27 0.69
16 6 0.15
ACGTcount: A:0.59, C:0.16, G:0.14, T:0.11
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:51623946 original size:37 final size:37
Alignment explanation
Indices: 51623905--51624091 Score: 102
Period size: 37 Copynumber: 5.2 Consensus size: 37
51623895 ATAAATTTTG
51623905 ATTTACACTTTTCTCGACCTTGTATCTGAGTAATTCA
1 ATTTACACTTTTCTCGACCTTGTATCTGAGTAATTCA
****** * * **
51623942 ATTT--ACTAAAGAAGA-CTAGT-TCTGAATAAATTTTG
1 ATTTACACTTTTCTCGACCTTGTATCTGAGT-AA-TTCA
51623977 ATTTACACTTTTCTCGACCTTGTATCTGAGTAATTCA
1 ATTTACACTTTTCTCGACCTTGTATCTGAGTAATTCA
****** * * **
51624014 ATTT--ACTAAAGAAGA-CTAGT-TCTGAATAAATTTTG
1 ATTTACACTTTTCTCGACCTTGTATCTGAGT-AA-TTCA
51624049 ATTTACACTTTTCTCGACCTTGTATCTGAGTAATTCA
1 ATTTACACTTTTCTCGACCTTGTATCTGAGTAATTCA
51624086 ATTTAC
1 ATTTAC
51624092 CAAAGTAAAT
Statistics
Matches: 98, Mismatches: 40, Indels: 24
0.60 0.25 0.15
Matches are distributed among these distances:
33 12 0.12
34 12 0.12
35 22 0.22
37 28 0.29
38 12 0.12
39 12 0.12
ACGTcount: A:0.30, C:0.17, G:0.12, T:0.41
Consensus pattern (37 bp):
ATTTACACTTTTCTCGACCTTGTATCTGAGTAATTCA
Done.