Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 173 of 255
Found at i:56908877 original size:21 final size:21
Alignment explanation
Indices: 56908853--56908894 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
56908843 TCATCAGATC
*
56908853 TACACCTTGAGGCATCGGGGG
1 TACACCTTGAGGAATCGGGGG
**
56908874 TACAGGTTGAGGAATCGGGGG
1 TACACCTTGAGGAATCGGGGG
56908895 AGGTGGGGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.21, C:0.17, G:0.43, T:0.19
Consensus pattern (21 bp):
TACACCTTGAGGAATCGGGGG
Found at i:56911103 original size:30 final size:30
Alignment explanation
Indices: 56911067--56911127 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
56911057 CATTTAATAC
* *
56911067 AAACTTTGGAAAAATTACATTTTTGTCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
* * *
56911097 AAACTTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
56911127 A
1 A
56911128 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.21, G:0.08, T:0.39
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACACTTTTGCCCCT
Found at i:56912915 original size:49 final size:46
Alignment explanation
Indices: 56912621--56912939 Score: 213
Period size: 47 Copynumber: 6.8 Consensus size: 46
56912611 ATTTCTTATG
* * * *
56912621 TGCCAGTGTAAGATATGTTTGGGACATGCATCGGCCAC-ATTATGA
1 TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGA
* ** * *
56912666 GTGCCAGTATAAGACCACATCTGGGACATGGCATCGGCATAGA-GATGA
1 -TGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGATGATGA
* *
56912714 GTGCCAGTGTAAGAGATTTCTGGGACATGCATCGGCCTCGATGATGA
1 -TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGA
* * * * * *
56912761 TAGCCAATGTAAGACGTGTCTAGGACACGCATCGG-CTAAGA-GTTG-
1 T-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGATGATGA
* * *
56912806 TGCTAGTGTAAGACATGCCTGGGACATGCATCAG--TACGTAT-ATACGA
1 TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CG-ATGAT--GA
* * * *
56912853 GAGCTAGTATAAGACCATGTCTGGGACATGGCATCGGCCTCGATGATGC
1 -TGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGATGATGA
*
56912902 TAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGC
1 T-GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
56912940 AACTTATCCC
Statistics
Matches: 214, Mismatches: 41, Indels: 33
0.74 0.14 0.11
Matches are distributed among these distances:
43 3 0.01
44 28 0.13
45 1 0.00
46 30 0.14
47 55 0.26
48 36 0.17
49 48 0.22
50 8 0.04
51 4 0.02
52 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (46 bp):
TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGA
Found at i:56915203 original size:50 final size:49
Alignment explanation
Indices: 56915090--56915219 Score: 179
Period size: 50 Copynumber: 2.6 Consensus size: 49
56915080 CTGGTACGCA
* * * **
56915090 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCGATACACG
* *
56915139 TAGTAGCCTGCACTTAGTACTATACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AACCATCCGATACACG
*
56915189 TAGTAGCCTACACTTAGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
56915220 TCACAGTTTT
Statistics
Matches: 71, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
49 29 0.41
50 42 0.59
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCGATACACG
Found at i:56915216 original size:28 final size:28
Alignment explanation
Indices: 56915132--56915217 Score: 87
Period size: 28 Copynumber: 3.3 Consensus size: 28
56915122 CAATTATCCG
*
56915132 ATACACGTAGTAGCCTGCACTTAGTACT
1 ATACACGTAGTAGCCTACACTTAGTACT
*
56915160 ATACACGT-G-A-CCTA-AC-CA-T-CT
1 ATACACGTAGTAGCCTACACTTAGTACT
56915181 GATACACGTAGTAGCCTACACTTAGTACT
1 -ATACACGTAGTAGCCTACACTTAGTACT
*
56915210 ACACACGT
1 ATACACGT
56915218 GATCACAGTT
Statistics
Matches: 46, Mismatches: 4, Indels: 16
0.70 0.06 0.24
Matches are distributed among these distances:
21 2 0.04
22 9 0.20
23 2 0.04
24 3 0.07
25 7 0.15
26 3 0.07
27 2 0.04
28 16 0.35
29 2 0.04
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (28 bp):
ATACACGTAGTAGCCTACACTTAGTACT
Found at i:56918597 original size:12 final size:12
Alignment explanation
Indices: 56918580--56918608 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
56918570 GAGAGAAGTT
56918580 GAGTTTGGTATC
1 GAGTTTGGTATC
56918592 GAGTTTGGTATC
1 GAGTTTGGTATC
56918604 GAGTT
1 GAGTT
56918609 AGTTCTTGGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.07, G:0.34, T:0.41
Consensus pattern (12 bp):
GAGTTTGGTATC
Found at i:56922803 original size:96 final size:95
Alignment explanation
Indices: 56922637--56922858 Score: 290
Period size: 96 Copynumber: 2.3 Consensus size: 95
56922627 TCTTGTGTGC
* *
56922637 CAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGTGCCAGTATAAGACCATGTCTA
1 CAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGCCAGTATAAGACCATGTCTA
* *
56922702 GGACATGGCATC-AGCGCAGA-GATGAGT-GT
66 GGACATGGCATCGACCGC-GATGATG-CTAGT
*
56922731 CAGTGTAAGACATGTCTGGGACATGCATCAG-CACGTATATATGAGAGCTAGTATAAGACCATGT
1 CAGTGTAAGACATGTCTGGGACATGCATCAGCCAC--AT-TATGAGAGCCAGTATAAGACCATGT
* *
56922795 CTGGGACATGGCATCGACCTCGATGATGCTAGT
63 CTAGGACATGGCATCGACCGCGATGATGCTAGT
56922828 CAGTGTAAGACCATGTCTGGGACATGGCATC
1 CAGTGTAAGA-CATGTCTGGGACAT-GCATC
56922859 GGCAACTTAT
Statistics
Matches: 113, Mismatches: 7, Indels: 11
0.86 0.05 0.08
Matches are distributed among these distances:
93 3 0.03
94 30 0.27
95 2 0.02
96 40 0.35
97 19 0.17
98 14 0.12
99 5 0.04
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.23
Consensus pattern (95 bp):
CAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGCCAGTATAAGACCATGTCTA
GGACATGGCATCGACCGCGATGATGCTAGT
Found at i:56922837 original size:49 final size:48
Alignment explanation
Indices: 56922637--56922859 Score: 189
Period size: 49 Copynumber: 4.7 Consensus size: 48
56922627 TCTTGTGTGC
* *
56922637 CAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCAC-ATTATG-AGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGACCACGATGATGTAGT
* * *
56922681 GCCAGTATAAGACCATGTCTAGGACATGGCATC-AGCGCAGAGATGA-GT-GT
1 --CAGTGTAAGACCATGTCTGGGACATGGCATCGA-C-CA-CGATGATGTAGT
* * *
56922731 CAGTGTAAGA-CATGTCTGGGACAT-GCATC-AGCACGTAT-ATATGAGAG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGACCACG-ATGATGT-AG-T
* *
56922778 CTAGTATAAGACCATGTCTGGGACATGGCATCGACCTCGATGATGCTAGT
1 C-AGTGTAAGACCATGTCTGGGACATGGCATCGACCACGATGATG-TAGT
56922828 CAGTGTAAGACCATGTCTGGGACATGGCATCG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCG
56922860 GCAACTTATC
Statistics
Matches: 142, Mismatches: 17, Indels: 33
0.74 0.09 0.17
Matches are distributed among these distances:
43 2 0.01
44 5 0.04
46 16 0.11
47 27 0.19
48 23 0.16
49 46 0.32
50 11 0.08
51 11 0.08
52 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.23
Consensus pattern (48 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGACCACGATGATGTAGT
Found at i:56927865 original size:48 final size:46
Alignment explanation
Indices: 56927724--56928142 Score: 232
Period size: 48 Copynumber: 8.8 Consensus size: 46
56927714 TATCGTTGCC
* * * * * *
56927724 ATGTTCCAAACAGGGTCTTACACTAGCTCACA-AGTCGAGGCTGATGCC
1 ATGTCCCAAACATGGTCTTACACTAGCTCTCATA-T--ATGCCGATGCA
* * * * **
56927772 ATGTCCCATACATGGTCTTACACGAGCTCTCTTCTCAATTTCGATGCA
1 ATGTCCCAAACATGGTCTTACACTAGCTCTCATAT--ATGCCGATGCA
** * * *
56927820 ATAACCCAAACATGGTCTTACACTGGCTCTCATGATGTGGCCGATGCC
1 ATGTCCCAAACATGGTCTTACACTAGCTCTCAT-ATAT-GCCGATGCA
*** * * * *
56927868 ATGTTTGAAACATGGTCTTACACTAGCACACATATCAATGCCAATGCC
1 ATGTCCCAAACATGGTCTTACACTAGCTCTCATAT--ATGCCGATGCA
* * * * *
56927916 ATGTCCTAGACATGGTCTTACGCTAGCTCTTACA-ACATTGCCGATGCC
1 ATGTCCCAAACATGGTCTTACACTAGCTC-T-CATATA-TGCCGATGCA
* * * * *
56927964 ATTTTCCAAACATGGTCTTACATTGGCTCTCATATTGTGGCCGATG-A
1 ATGTCCCAAACATGGTCTTACACTAGCTCTCATA-TAT-GCCGATGCA
* * *
56928011 TATGTCCCAAACATGGTCTTACACTAGCACACATATCAATGCCGATACA
1 -ATGTCCCAAACATGGTCTTACACTAGCTCTCATAT--ATGCCGATGCA
* * * * * *
56928060 ATATCCCAGACATGGTCTTACACTGGCTCTCACAACATTGCCGATGCC
1 ATGTCCCAAACATGGTCTTACACTAGCTCTCA-TATA-TGCCGATGCA
* * *
56928108 ATGTTCCAAACATGTTTTTACACTAGCTCTCATAT
1 ATGTCCCAAACATGGTCTTACACTAGCTCTCATAT
56928143 CGTGGTCAAT
Statistics
Matches: 276, Mismatches: 78, Indels: 35
0.71 0.20 0.09
Matches are distributed among these distances:
46 2 0.01
47 10 0.04
48 256 0.93
49 6 0.02
50 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (46 bp):
ATGTCCCAAACATGGTCTTACACTAGCTCTCATATATGCCGATGCA
Found at i:56927980 original size:144 final size:143
Alignment explanation
Indices: 56927825--56928192 Score: 493
Period size: 144 Copynumber: 2.6 Consensus size: 143
56927815 ATGCAATAAC
***
56927825 CCAAACATGGTCTTACACTGGCTCTCATGATGTGGCCGATGCCATGTTTGAAACATGGTCTTACA
1 CCAAACATGGTCTTACACTGGCTCTCAT-ATGTGGCCGATGCCATGTCCCAAACATGGTCTTACA
* * * * * *
56927890 CTAGCACACATATCAATGCCAATGCCATGTCCTAGACATGGTCTTACGCTAGCTCTTACAACATT
65 CTAGCACACATATCAATGCCAATACAATATCCCAGACATGGTCTTACACTAGCTCTCACAACATT
*
56927955 GCCGATGCCATTTT
130 GCCGATGCCATGTT
* **
56927969 CCAAACATGGTCTTACATTGGCTCTCATATTGTGGCCGATGATATGTCCCAAACATGGTCTTACA
1 CCAAACATGGTCTTACACTGGCTCTCATA-TGTGGCCGATGCCATGTCCCAAACATGGTCTTACA
* *
56928034 CTAGCACACATATCAATGCCGATACAATATCCCAGACATGGTCTTACACTGGCTCTCACAACATT
65 CTAGCACACATATCAATGCCAATACAATATCCCAGACATGGTCTTACACTAGCTCTCACAACATT
56928099 GCCGATGCCATGTT
130 GCCGATGCCATGTT
* * * * * ** *
56928113 CCAAACATGTTTTTACACTAGCTCTCATATCGTGGTCAATGCCATGTCCCAGGCATGATCTTACA
1 CCAAACATGGTCTTACACTGGCTCTCATAT-GTGGCCGATGCCATGTCCCAAACATGGTCTTACA
*
56928178 CTGGCACACATATCA
65 CTAGCACACATATCA
56928193 CCCAAATTTC
Statistics
Matches: 195, Mismatches: 27, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
143 2 0.01
144 193 0.99
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.29
Consensus pattern (143 bp):
CCAAACATGGTCTTACACTGGCTCTCATATGTGGCCGATGCCATGTCCCAAACATGGTCTTACAC
TAGCACACATATCAATGCCAATACAATATCCCAGACATGGTCTTACACTAGCTCTCACAACATTG
CCGATGCCATGTT
Found at i:56931495 original size:7 final size:7
Alignment explanation
Indices: 56931483--56931544 Score: 124
Period size: 7 Copynumber: 8.9 Consensus size: 7
56931473 CACATTTCTA
56931483 CTCATCC
1 CTCATCC
56931490 CTCATCC
1 CTCATCC
56931497 CTCATCC
1 CTCATCC
56931504 CTCATCC
1 CTCATCC
56931511 CTCATCC
1 CTCATCC
56931518 CTCATCC
1 CTCATCC
56931525 CTCATCC
1 CTCATCC
56931532 CTCATCC
1 CTCATCC
56931539 CTCATC
1 CTCATC
56931545 ATTCATCATT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 55 1.00
ACGTcount: A:0.15, C:0.56, G:0.00, T:0.29
Consensus pattern (7 bp):
CTCATCC
Found at i:56932700 original size:41 final size:41
Alignment explanation
Indices: 56932647--56932757 Score: 136
Period size: 41 Copynumber: 2.7 Consensus size: 41
56932637 GCGATTCGAC
* * *
56932647 ATAGCTTTGGCTATATATGGCACGTAGTGTGCGATATTG-AG
1 ATAGCTTCGGCTATATATGGCACTTAGTGTGCAAT-TTGTAG
*
56932688 ATAGCTTCGGCTATATATAGCACTTAGTGTGCAATTTGTAG
1 ATAGCTTCGGCTATATATGGCACTTAGTGTGCAATTTGTAG
* * *
56932729 -TAGCTTCTGCTATGTACGGCACTTAGTGT
1 ATAGCTTCGGCTATATATGGCACTTAGTGT
56932758 ATGAAATATC
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
40 28 0.46
41 33 0.54
ACGTcount: A:0.23, C:0.15, G:0.25, T:0.36
Consensus pattern (41 bp):
ATAGCTTCGGCTATATATGGCACTTAGTGTGCAATTTGTAG
Found at i:56940124 original size:41 final size:41
Alignment explanation
Indices: 56940079--56940390 Score: 366
Period size: 41 Copynumber: 7.7 Consensus size: 41
56940069 CAACAAATCA
*
56940079 GCTATATATGGCACTTCGTGTGCGAGATTGAGATAGCTTCG
1 GCTATATATGGCACTTAGTGTGCGAGATTGAGATAGCTTCG
* *
56940120 GCTATATATGGCACTTAGTGTGC--GATTCGACATAGCTTCC
1 GCTATATATGGCACTTAGTGTGCGAGATT-GAGATAGCTTCG
* *
56940160 CCTATATATGGCACTTAGTGTGCGAGGTTGAGATAGCTTCG
1 GCTATATATGGCACTTAGTGTGCGAGATTGAGATAGCTTCG
* *
56940201 GCTATATATGGCACTTTGTGTGC-A-ATTCGACATAGCTTCG
1 GCTATATATGGCACTTAGTGTGCGAGATT-GAGATAGCTTCG
* * *
56940241 ACTATATATGGCACTTTGTGTGTGAGATTGAGATAGCTTCG
1 GCTATATATGGCACTTAGTGTGCGAGATTGAGATAGCTTCG
* * *
56940282 ACCATATATGGCA-TTGAGTGTGCGAGATCGAGATAGCTTCG
1 GCTATATATGGCACTT-AGTGTGCGAGATTGAGATAGCTTCG
* * * *
56940323 ACTATATATGGCACTTAGTGTGCGA-TTTGAGATGGCTTCA
1 GCTATATATGGCACTTAGTGTGCGAGATTGAGATAGCTTCG
* * * *
56940363 GCTATGTACGACACTTAGTGTGGGAGAT
1 GCTATATATGGCACTTAGTGTGCGAGAT
56940391 ATCAAGTATT
Statistics
Matches: 233, Mismatches: 29, Indels: 18
0.83 0.10 0.06
Matches are distributed among these distances:
39 6 0.03
40 98 0.42
41 121 0.52
42 8 0.03
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (41 bp):
GCTATATATGGCACTTAGTGTGCGAGATTGAGATAGCTTCG
Found at i:56940166 original size:81 final size:81
Alignment explanation
Indices: 56940080--56940384 Score: 416
Period size: 81 Copynumber: 3.8 Consensus size: 81
56940070 AACAAATCAG
*
56940080 CTATATATGGCACTTCGTGTGCGAGATTGAGATAGCTTCGGCTATATATGGCACTTAGTGTGCGA
1 CTATATATGGCACTTAGTGTGCGAGATTGAGATAGCTTCGGCTATATATGGCACTTAGTGTGCGA
**
56940145 TTCGACATAGCTTCCC
66 TTCGACATAGCTTCGA
* * *
56940161 CTATATATGGCACTTAGTGTGCGAGGTTGAGATAGCTTCGGCTATATATGGCACTTTGTGTGCAA
1 CTATATATGGCACTTAGTGTGCGAGATTGAGATAGCTTCGGCTATATATGGCACTTAGTGTGCGA
56940226 TTCGACATAGCTTCGA
66 TTCGACATAGCTTCGA
* * * *
56940242 CTATATATGGCACTTTGTGTGTGAGATTGAGATAGCTTCGACCATATATGGCA-TTGAGTGTGCG
1 CTATATATGGCACTTAGTGTGCGAGATTGAGATAGCTTCGGCTATATATGGCACTT-AGTGTGCG
* *
56940306 AGATCGAGATAGCTTCGA
65 A-TTCGACATAGCTTCGA
* * * * * *
56940324 CTATATATGGCACTTAGTGTGCGA-TTTGAGATGGCTTCAGCTATGTACGACACTTAGTGTG
1 CTATATATGGCACTTAGTGTGCGAGATTGAGATAGCTTCGGCTATATATGGCACTTAGTGTG
56940385 GGAGATATCA
Statistics
Matches: 196, Mismatches: 25, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
80 2 0.01
81 156 0.80
82 38 0.19
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (81 bp):
CTATATATGGCACTTAGTGTGCGAGATTGAGATAGCTTCGGCTATATATGGCACTTAGTGTGCGA
TTCGACATAGCTTCGA
Found at i:56940390 original size:122 final size:121
Alignment explanation
Indices: 56940080--56940390 Score: 369
Period size: 122 Copynumber: 2.5 Consensus size: 121
56940070 AACAAATCAG
* * *
56940080 CTATATATGGCACTTCGTGTGCGAGATTGAGATAGCTTCGGCTATATATGGCACTTAGTGT-GCG
1 CTATATATGGCACTTAGTGTGCGA-TTTGAGATAGCTTC-GCTATATATGGCACTTAGTGTGGAG
* * * *
56940144 ATTCGACATAGCTTCCCCTATATATGGCACTTAGTGTGCGAGGTTGAGATAGCTTCGG
64 ATTCGACATAGCTTCACCTATATATGGCACTTAGTGTGCGAGATCGAGATAGCTTCGA
* * * * *
56940202 CTATATATGGCACTTTGTGTGCAATTCGACATAGCTTCGACTATATATGGCACTTTGTGTGTGAG
1 CTATATATGGCACTTAGTGTGCGATTTGAGATAGCTTCG-CTATATATGGCACTTAGTGTG-GAG
*
56940267 ATT-GAGATAGCTTCGACC-ATATATGGCA-TTGAGTGTGCGAGATCGAGATAGCTTCGA
64 ATTCGACATAGCTTC-ACCTATATATGGCACTT-AGTGTGCGAGATCGAGATAGCTTCGA
* * * *
56940324 CTATATATGGCACTTAGTGTGCGATTTGAGATGGCTTCAGCTATGTACGACACTTAGTGTGGGAG
1 CTATATATGGCACTTAGTGTGCGATTTGAGATAGCTTC-GCTATATATGGCACTTAGTGT-GGAG
56940389 AT
64 AT
56940391 ATCAAGTATT
Statistics
Matches: 161, Mismatches: 21, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
120 1 0.01
121 32 0.20
122 119 0.74
123 9 0.06
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (121 bp):
CTATATATGGCACTTAGTGTGCGATTTGAGATAGCTTCGCTATATATGGCACTTAGTGTGGAGAT
TCGACATAGCTTCACCTATATATGGCACTTAGTGTGCGAGATCGAGATAGCTTCGA
Found at i:56947975 original size:8 final size:8
Alignment explanation
Indices: 56947959--56948005 Score: 67
Period size: 8 Copynumber: 5.9 Consensus size: 8
56947949 ATCGGTAAAA
56947959 GCTGAAAT
1 GCTGAAAT
*
56947967 GCCGAAAT
1 GCTGAAAT
*
56947975 GCTAAAAT
1 GCTGAAAT
*
56947983 GCCGAAAT
1 GCTGAAAT
56947991 GCTGAAAT
1 GCTGAAAT
56947999 GCTGAAA
1 GCTGAAA
56948006 AGCCAAAAGT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 33 1.00
ACGTcount: A:0.40, C:0.17, G:0.23, T:0.19
Consensus pattern (8 bp):
GCTGAAAT
Found at i:56947990 original size:24 final size:23
Alignment explanation
Indices: 56947954--56948009 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 23
56947944 TATGAATCGG
*
56947954 TAAAAGCTGAAATGCCGAAATGC
1 TAAAAGCCGAAATGCCGAAATGC
*
56947977 TAAAATGCCGAAATGCTGAAATGC
1 TAAAA-GCCGAAATGCCGAAATGC
56948001 TGAAAAGCC
1 T-AAAAGCC
56948010 AAAAGTTTGG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 5 0.17
24 20 0.69
25 4 0.14
ACGTcount: A:0.43, C:0.18, G:0.21, T:0.18
Consensus pattern (23 bp):
TAAAAGCCGAAATGCCGAAATGC
Found at i:56948270 original size:29 final size:29
Alignment explanation
Indices: 56948237--56948338 Score: 134
Period size: 29 Copynumber: 3.6 Consensus size: 29
56948227 TGAATGTGAC
*
56948237 TGGGCCTAATGGGCCATATAAATTTGATT
1 TGGGCCTAATGGGCCATATAAATATGATT
* **
56948266 TGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAATGGGCCATATAAATATGATT
* *
56948295 TGGGCCTAATGGGCCATATGAATATCA-T
1 TGGGCCTAATGGGCCATATAAATATGATT
*
56948323 TGGGCTTAATGGGCCA
1 TGGGCCTAATGGGCCA
56948339 GATACAGGTA
Statistics
Matches: 64, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
28 16 0.25
29 48 0.75
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.29
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAATATGATT
Found at i:56948307 original size:58 final size:57
Alignment explanation
Indices: 56948237--56948347 Score: 168
Period size: 57 Copynumber: 1.9 Consensus size: 57
56948227 TGAATGTGAC
* * *
56948237 TGGGCCTAATGGGCCATATAAATTTGATTTGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAATGGGCCATATAAATATCA-TTGGGCCTAATGGGCCAGATACAGGTGATT
* *
56948295 TGGGCCTAATGGGCCATATGAATATCATTGGGCTTAATGGGCCAGATACAGGT
1 TGGGCCTAATGGGCCATATAAATATCATTGGGCCTAATGGGCCAGATACAGGT
56948348 ATGTGAATTT
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
57 24 0.50
58 24 0.50
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (57 bp):
TGGGCCTAATGGGCCATATAAATATCATTGGGCCTAATGGGCCAGATACAGGTGATT
Found at i:56952760 original size:46 final size:45
Alignment explanation
Indices: 56952693--56952821 Score: 188
Period size: 46 Copynumber: 2.8 Consensus size: 45
56952683 TATTTGGGCA
56952693 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAAC
1 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAAC
* *
56952738 GTCCGAACTCGTTGAGTTGAGTCGGAGTTCACTTATGGATGCGAAC
1 -TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAAC
* *
56952784 ACCTGAGCTCGTTGAGTTGAGT-TCGAGTTCGCTTATGG
1 TCC-GAGCTCGTTGAGTTGAGTCT-GAGTTCACTTATGG
56952822 GCGGGTTACA
Statistics
Matches: 75, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
45 2 0.03
46 73 0.97
ACGTcount: A:0.19, C:0.19, G:0.30, T:0.31
Consensus pattern (45 bp):
TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAAC
Found at i:56957139 original size:40 final size:39
Alignment explanation
Indices: 56957102--56957373 Score: 276
Period size: 40 Copynumber: 6.8 Consensus size: 39
56957092 GGATATAGCC
* * *
56957102 ACTAGCTCAAATGCCTTCAGGACTTATCCCGGTTATAGTA
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGG-TATAGTA
* *
56957142 ACTTGCACAAATGCCTTCGGGACTTAGCCCGGTATAATA
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTATAGTA
* *
56957181 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTA-TAGTA
* * * * *
56957221 GCTCGCACAACTGCCTTCGGGACTTAGCCCAGAATTAGTA
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTA-TAGTA
* ** *
56957261 GCCCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTA-TAGTA
* * * **
56957301 ACTCGCACAAATGCCTTCGGGACTTAGCCCAGAATTAGCC
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTA-TAGTA
* *
56957341 ACTACCTCAAATG-CTCTCGGGACTTAGCCCGGT
1 ACTAGCACAAATGCCT-TCGGGACTTAGCCCGGT
56957374 TATCATCCGA
Statistics
Matches: 206, Mismatches: 24, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 40 0.19
40 166 0.81
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (39 bp):
ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTATAGTA
Found at i:56957293 original size:80 final size:80
Alignment explanation
Indices: 56957109--56957372 Score: 338
Period size: 80 Copynumber: 3.3 Consensus size: 80
56957099 GCCACTAGCT
* * * * *
56957109 CAAATGCCTTCAGGACTTATCCCGG-TTATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCA
* * *
56957173 GTA-TAATAACTCGCA
65 GAATTAGTAACCCGCA
* *
56957188 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAGCTCGCACAACTGCCTTCGGGACTTAGCCCAG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAG
*
56957253 AATTAGTAGCCCGCA
66 AATTAGTAACCCGCA
56957268 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAG
** * *
56957333 AATTAGCCACTAC-CT
66 AATTAGTAAC-CCGCA
56957348 CAAATG-CTCTCGGGACTTAGCCCGG
1 CAAATGCCT-TCGGGACTTAGCCCGG
56957373 TTATCATCCG
Statistics
Matches: 163, Mismatches: 18, Indels: 7
0.87 0.10 0.04
Matches are distributed among these distances:
79 59 0.36
80 103 0.63
81 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAG
AATTAGTAACCCGCA
Found at i:56957361 original size:120 final size:119
Alignment explanation
Indices: 56957146--56957370 Score: 339
Period size: 120 Copynumber: 1.9 Consensus size: 119
56957136 ATAGTAACTT
*
56957146 GCACAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCACAAATGCCTTCGGGACTTAGCCC
1 GCACAAATGCCTTCGGGACTTAGCCCGGAATAATAACTCGCACAAATGCCTTCGGGACTTAGCCC
* * *
56957211 GGAATTAGTAGCTCGCACAACTGCCTTCGGGACTTAGCCCAGAATTAGTAGCCC
66 AGAATTAGCAGCTCGCACAAATGCCTTCGGGACTTAGCCCAGAATTAGTAGCCC
*
56957265 GCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
1 GCACAAATGCCTTCGGGACTTAGCCCGGAA-TAATAACTCGCACAAATGCCTTCGGGACTTAGCC
*
56957330 CAGAATTAGCCA-CTAC-CTCAAATG-CTCTCGGGACTTAGCCC
65 CAGAATTAG-CAGCT-CGCACAAATGCCT-TCGGGACTTAGCCC
56957371 GGTTATCATC
Statistics
Matches: 96, Mismatches: 6, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
119 31 0.32
120 63 0.66
121 2 0.02
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.22
Consensus pattern (119 bp):
GCACAAATGCCTTCGGGACTTAGCCCGGAATAATAACTCGCACAAATGCCTTCGGGACTTAGCCC
AGAATTAGCAGCTCGCACAAATGCCTTCGGGACTTAGCCCAGAATTAGTAGCCC
Found at i:56965081 original size:40 final size:40
Alignment explanation
Indices: 56965037--56965260 Score: 312
Period size: 40 Copynumber: 5.6 Consensus size: 40
56965027 GCCACTAGCT
* * *
56965037 CAAATGCCTTCGGGACTTATCCCGG-TTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
56965077 CAAATGCCTTCGGGACTTAGCCCGGTA-TAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
56965116 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
56965156 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* *
56965196 CAAATGCCTTCGGGACTTAGCCCGGAATTAG-ACACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTA-ACTCGCA
56965236 CAAATG-CTCTCGGGACTTAGCCCGG
1 CAAATGCCT-TCGGGACTTAGCCCGG
56965261 TTATCATCCG
Statistics
Matches: 170, Mismatches: 10, Indels: 8
0.90 0.05 0.04
Matches are distributed among these distances:
39 39 0.23
40 131 0.77
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:56981350 original size:15 final size:15
Alignment explanation
Indices: 56981324--56981363 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
56981314 AGATTTCAAT
56981324 CATCCTCCTCATCACC
1 CATCCTCCTCATC-CC
*
56981340 CA-CCTCTTCATCCC
1 CATCCTCCTCATCCC
56981354 CATCCTCCTC
1 CATCCTCCTC
56981364 CTCTTATATC
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
14 4 0.19
15 15 0.71
16 2 0.10
ACGTcount: A:0.15, C:0.57, G:0.00, T:0.28
Consensus pattern (15 bp):
CATCCTCCTCATCCC
Found at i:56987396 original size:93 final size:93
Alignment explanation
Indices: 56987284--56987455 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
56987274 CGCCCATAAG
*
56987284 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
56987348 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
56987377 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
56987442 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
56987456 TCAATCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:56987450 original size:46 final size:46
Alignment explanation
Indices: 56987277--56987452 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
56987267 TGTAACCCGC
* *
56987277 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
56987323 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
56987373 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
56987416 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
56987453 TGCTCAATCA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 61 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:56990413 original size:23 final size:24
Alignment explanation
Indices: 56990387--56990432 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
56990377 TTTCACTGTC
*
56990387 TCAA-ATTCAAGTCTTTTGTGACA
1 TCAAGATTCAAGACTTTTGTGACA
*
56990410 TCAAGTATTTAAGACTTTTGTGA
1 TCAAG-ATTCAAGACTTTTGTGA
56990433 TCGGTATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 4 0.21
25 15 0.79
ACGTcount: A:0.30, C:0.13, G:0.15, T:0.41
Consensus pattern (24 bp):
TCAAGATTCAAGACTTTTGTGACA
Found at i:56994963 original size:93 final size:93
Alignment explanation
Indices: 56994851--56995022 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
56994841 CGCCCATAAG
*
56994851 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
56994915 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
56994944 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
56995009 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
56995023 TCAATCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:56995017 original size:46 final size:46
Alignment explanation
Indices: 56994844--56995019 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
56994834 TGTAACCCGC
* *
56994844 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
56994890 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
56994940 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
56994983 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
56995020 TGCTCAATCA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 61 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:56995497 original size:30 final size:31
Alignment explanation
Indices: 56995438--56995498 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
56995428 TCCTTAACTC
56995438 AAATTTTGGCAAAATTACAATTTTACCCCTA
1 AAATTTTGGCAAAATTACAATTTTACCCCTA
* * * *
56995469 AAATTTT-GCATATTTACATTTTTGCCCCTA
1 AAATTTTGGCAAAATTACAATTTTACCCCTA
56995499 GGCTCGGGAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 19 0.73
31 7 0.27
ACGTcount: A:0.33, C:0.20, G:0.07, T:0.41
Consensus pattern (31 bp):
AAATTTTGGCAAAATTACAATTTTACCCCTA
Found at i:56998136 original size:16 final size:16
Alignment explanation
Indices: 56998115--56998145 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
56998105 CTATGCATGT
*
56998115 AAAATATAAAAGACAG
1 AAAATACAAAAGACAG
56998131 AAAATACAAAAGACA
1 AAAATACAAAAGACA
56998146 TAATAGTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.10, G:0.10, T:0.10
Consensus pattern (16 bp):
AAAATACAAAAGACAG
Found at i:57000851 original size:3 final size:3
Alignment explanation
Indices: 57000845--57000873 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
57000835 ATAATAATAA
57000845 TAG TAG TAG TAG TAG TAG TAG TA- TAG TAG
1 TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG
57000874 ATAAGAAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 23 0.92
ACGTcount: A:0.34, C:0.00, G:0.31, T:0.34
Consensus pattern (3 bp):
TAG
Found at i:57003226 original size:20 final size:20
Alignment explanation
Indices: 57003201--57003238 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
57003191 CGGTTAAGTC
57003201 ATTGATTC-ATCAGTCAAGCA
1 ATTGATTCAATC-GTCAAGCA
57003221 ATTGATTCAATCGTCAAG
1 ATTGATTCAATCGTCAAG
57003239 TCAACTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 14 0.82
21 3 0.18
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (20 bp):
ATTGATTCAATCGTCAAGCA
Found at i:57004694 original size:24 final size:26
Alignment explanation
Indices: 57004633--57004694 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 26
57004623 TATCTTTACA
*
57004633 TATTTTTAATAATTTGATTATTACTT
1 TATTTTTAATAATTTAATTATTACTT
*
57004659 TAGTTTTGAATAA-TTAATTA-TA-TT
1 TA-TTTTTAATAATTTAATTATTACTT
57004683 TATTTTATAATA
1 TATTTT-TAATA
57004695 TAAAATAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
23 4 0.13
24 8 0.26
25 2 0.06
26 8 0.26
27 9 0.29
ACGTcount: A:0.35, C:0.02, G:0.05, T:0.58
Consensus pattern (26 bp):
TATTTTTAATAATTTAATTATTACTT
Found at i:57005576 original size:18 final size:18
Alignment explanation
Indices: 57005555--57005594 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
57005545 GGTTTTTTAA
57005555 TTTTG-TCAGGTTTAGGGT
1 TTTTGTTCAGG-TTAGGGT
*
57005573 TTTTGTTGAGGTTAGGGT
1 TTTTGTTCAGGTTAGGGT
57005591 TTTT
1 TTTT
57005595 AAGGGTTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.10, C:0.03, G:0.33, T:0.55
Consensus pattern (18 bp):
TTTTGTTCAGGTTAGGGT
Found at i:57011071 original size:21 final size:21
Alignment explanation
Indices: 57011034--57011106 Score: 119
Period size: 21 Copynumber: 3.4 Consensus size: 21
57011024 AGGCACTTTA
57011034 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGTA-TT-AGGCACCTCG
57011057 TGTGTCGTATTAGGCACCTCG
1 TGTGTCGTATTAGGCACCTCG
*
57011078 TGTGTCGTATCAGGCACCTCG
1 TGTGTCGTATTAGGCACCTCG
57011099 TGTGTCGT
1 TGTGTCGT
57011107 TTCATACACT
Statistics
Matches: 49, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
21 38 0.78
22 2 0.04
23 9 0.18
ACGTcount: A:0.12, C:0.25, G:0.29, T:0.34
Consensus pattern (21 bp):
TGTGTCGTATTAGGCACCTCG
Found at i:57017411 original size:3 final size:3
Alignment explanation
Indices: 57017405--57017434 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
57017395 ATGATCGTTG
57017405 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
57017435 AAGCATGACT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:57020025 original size:9 final size:9
Alignment explanation
Indices: 57020011--57020043 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
57020001 ATTCGAGTTG
57020011 ACTCGAATA
1 ACTCGAATA
*
57020020 ACTCGATTA
1 ACTCGAATA
57020029 ACTCGAATA
1 ACTCGAATA
57020038 ACTCGA
1 ACTCGA
57020044 TTCGTTTAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.39, C:0.24, G:0.12, T:0.24
Consensus pattern (9 bp):
ACTCGAATA
Found at i:57020034 original size:18 final size:18
Alignment explanation
Indices: 57020011--57020045 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
57020001 ATTCGAGTTG
57020011 ACTCGAATAACTCGATTA
1 ACTCGAATAACTCGATTA
57020029 ACTCGAATAACTCGATT
1 ACTCGAATAACTCGATT
57020046 CGTTTAACTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.37, C:0.23, G:0.11, T:0.29
Consensus pattern (18 bp):
ACTCGAATAACTCGATTA
Found at i:57025040 original size:43 final size:43
Alignment explanation
Indices: 57024992--57025108 Score: 139
Period size: 43 Copynumber: 2.7 Consensus size: 43
57024982 CATAGGATTT
* * *
57024992 TCGATATGTG-TTCTCATATAAGACCACGTCTGGGA-TGTTGGCA
1 TCGATATGTGATT-ACATGTAAGACCACGTCTGGGACAG-TGGCA
* * **
57025035 TCGATAAGTGATTACATGTTAGACCTTGTCTGGGACAGTGGCA
1 TCGATATGTGATTACATGTAAGACCACGTCTGGGACAGTGGCA
57025078 TCGATATGTGATTACATGTAAGACCACGTCT
1 TCGATATGTGATTACATGTAAGACCACGTCT
57025109 AAGATATTAG
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
43 58 0.95
44 3 0.05
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.32
Consensus pattern (43 bp):
TCGATATGTGATTACATGTAAGACCACGTCTGGGACAGTGGCA
Found at i:57027769 original size:17 final size:17
Alignment explanation
Indices: 57027747--57027781 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
57027737 TATGTACATG
57027747 TTCCATATTAGTTACTT
1 TTCCATATTAGTTACTT
57027764 TTCCATATTAGTTACTT
1 TTCCATATTAGTTACTT
57027781 T
1 T
57027782 GCTTTTGTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.23, C:0.17, G:0.06, T:0.54
Consensus pattern (17 bp):
TTCCATATTAGTTACTT
Found at i:57032211 original size:18 final size:18
Alignment explanation
Indices: 57032188--57032224 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
57032178 ATCGTGTGGC
57032188 TCACACGGCCAGGTGACA
1 TCACACGGCCAGGTGACA
57032206 TCACACGGCCAGGTGACA
1 TCACACGGCCAGGTGACA
57032224 T
1 T
57032225 TCCCATATCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.27, C:0.32, G:0.27, T:0.14
Consensus pattern (18 bp):
TCACACGGCCAGGTGACA
Found at i:57037344 original size:15 final size:17
Alignment explanation
Indices: 57037314--57037345 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
57037304 TTGATACTTG
57037314 TGAATGTGAGTTTGGTA
1 TGAATGTGAGTTTGGTA
57037331 TGAAT-TGA-TTTGGTA
1 TGAATGTGAGTTTGGTA
57037346 AATTATGCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (17 bp):
TGAATGTGAGTTTGGTA
Found at i:57039189 original size:17 final size:17
Alignment explanation
Indices: 57039151--57039192 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
57039141 AAATGTGAAG
*
57039151 TAGAGAAAGAGGAAATC
1 TAGAGAAAGAGGAAAGC
*
57039168 GAGAGAAAGA-GAAAGGC
1 TAGAGAAAGAGGAAA-GC
57039185 TAGAGAAA
1 TAGAGAAA
57039193 ATGAGTGTGA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
16 4 0.19
17 17 0.81
ACGTcount: A:0.55, C:0.05, G:0.33, T:0.07
Consensus pattern (17 bp):
TAGAGAAAGAGGAAAGC
Found at i:57040857 original size:27 final size:27
Alignment explanation
Indices: 57040818--57041012 Score: 187
Period size: 27 Copynumber: 7.2 Consensus size: 27
57040808 GGTTGTTAAG
*
57040818 ACCCCTGGTTTGTAAAATTACTGAAAT
1 ACCCCTGATTTGTAAAATTACTGAAAT
* ** *
57040845 ACCCCCGGGTTGTAAAATTACCGAAAT
1 ACCCCTGATTTGTAAAATTACTGAAAT
* *
57040872 ACCCCTGACTTGTAACATTACTGAAAT
1 ACCCCTGATTTGTAAAATTACTGAAAT
* *
57040899 ACCCCTAATTTGTAAAATTA-TTAAATT
1 ACCCCTGATTTGTAAAATTACTGAAA-T
* * *
57040926 ACCCCTAATTTTTAAAATTACTAAAAT
1 ACCCCTGATTTGTAAAATTACTGAAAT
** *
57040953 ATCCCC-GGGTTGTAAAATTATTGAAAT
1 A-CCCCTGATTTGTAAAATTACTGAAAT
* * **
57040980 ACCCTTGATTTGTGAAATTACCAAAAT
1 ACCCCTGATTTGTAAAATTACTGAAAT
57041007 ACCCCT
1 ACCCCT
57041013 ATAGGGTAGG
Statistics
Matches: 136, Mismatches: 28, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
26 7 0.05
27 121 0.89
28 8 0.06
ACGTcount: A:0.36, C:0.21, G:0.11, T:0.32
Consensus pattern (27 bp):
ACCCCTGATTTGTAAAATTACTGAAAT
Found at i:57040885 original size:54 final size:53
Alignment explanation
Indices: 57040818--57041011 Score: 208
Period size: 54 Copynumber: 3.6 Consensus size: 53
57040808 GGTTGTTAAG
* * *
57040818 ACCCCTGGTTTGTAAAATTACTGAAATACCCCCGGGTTGTAAAATTACCGAAAT
1 ACCCCTGATTTGTAAAATTACTAAAATACCCCCGGGTTGTAAAATTA-TGAAAT
* * * **** *
57040872 ACCCCTGACTTGTAACATTACTGAAATACCCCTAATTTGTAAAATTATTAAATT
1 ACCCCTGATTTGTAAAATTACTAAAATACCCCCGGGTTGTAAAATTATGAAA-T
* * *
57040926 ACCCCTAATTTTTAAAATTACTAAAATATCCCCGGGTTGTAAAATTATTGAAAT
1 ACCCCTGATTTGTAAAATTACTAAAATACCCCCGGGTTGTAAAATTA-TGAAAT
* * *
57040980 ACCCTTGATTTGTGAAATTACCAAAATACCCC
1 ACCCCTGATTTGTAAAATTACTAAAATACCCC
57041012 TATAGGGTAG
Statistics
Matches: 112, Mismatches: 26, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
53 3 0.03
54 105 0.94
55 4 0.04
ACGTcount: A:0.36, C:0.21, G:0.11, T:0.32
Consensus pattern (53 bp):
ACCCCTGATTTGTAAAATTACTAAAATACCCCCGGGTTGTAAAATTATGAAAT
Found at i:57041026 original size:27 final size:27
Alignment explanation
Indices: 57040996--57041101 Score: 151
Period size: 27 Copynumber: 3.9 Consensus size: 27
57040986 GATTTGTGAA
* *
57040996 ATTACCAAAATACCCCTATAGGGTAGG
1 ATTACCGAAATACCCCTGTAGGGTAGG
*
57041023 ATTATCGAAATACCCCTGTAGGGTAGG
1 ATTACCGAAATACCCCTGTAGGGTAGG
* *
57041050 ATTATCGAAATACCCTTGTAGGGTAGG
1 ATTACCGAAATACCCCTGTAGGGTAGG
57041077 ATTACCGAAATA-CCCTCGTAGGGTA
1 ATTACCGAAATACCCCT-GTAGGGTA
57041102 AAATGACCGT
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
26 3 0.04
27 69 0.96
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (27 bp):
ATTACCGAAATACCCCTGTAGGGTAGG
Found at i:57041117 original size:27 final size:26
Alignment explanation
Indices: 57041087--57041159 Score: 69
Period size: 26 Copynumber: 2.8 Consensus size: 26
57041077 ATTACCGAAA
57041087 TACCCTCGTAGGGTAAAATGACCGTTT
1 TACCCT-GTAGGGTAAAATGACCGTTT
** * *
57041114 TACCCTAAAGAGTAAAATGACTGTTT
1 TACCCTGTAGGGTAAAATGACCGTTT
*
57041140 TGCCCTTGT-GGGT-AAATGAC
1 TACCC-TGTAGGGTAAAATGAC
57041160 AGGCTTGGGC
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
25 7 0.19
26 23 0.62
27 7 0.19
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Consensus pattern (26 bp):
TACCCTGTAGGGTAAAATGACCGTTT
Found at i:57041155 original size:26 final size:26
Alignment explanation
Indices: 57041096--57041145 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
57041086 ATACCCTCGT
57041096 AGGGTAAAATGACCGTTTTACCCTAA
1 AGGGTAAAATGACCGTTTTACCCTAA
* * *
57041122 AGAGTAAAATGACTGTTTTGCCCT
1 AGGGTAAAATGACCGTTTTACCCT
57041146 TGTGGGTAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (26 bp):
AGGGTAAAATGACCGTTTTACCCTAA
Found at i:57047505 original size:15 final size:15
Alignment explanation
Indices: 57047485--57047520 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
57047475 CCCATTAAAG
*
57047485 ATTTGAAAGCAAAAT
1 ATTTGAAAGAAAAAT
57047500 ATTTGAAAGAAAAAT
1 ATTTGAAAGAAAAAT
57047515 ATTTGA
1 ATTTGA
57047521 TTGTGAAAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.53, C:0.03, G:0.14, T:0.31
Consensus pattern (15 bp):
ATTTGAAAGAAAAAT
Found at i:57049192 original size:34 final size:34
Alignment explanation
Indices: 57049149--57049220 Score: 126
Period size: 34 Copynumber: 2.1 Consensus size: 34
57049139 CATTTAATAT
*
57049149 GATCATATAGTAGAGGCGAGGGTTTTCCTGAAGA
1 GATCATATAGTAGAGGCGAGGGTTTGCCTGAAGA
*
57049183 GATCATATAGTAGAGGCGGGGGTTTGCCTGAAGA
1 GATCATATAGTAGAGGCGAGGGTTTGCCTGAAGA
57049217 GATC
1 GATC
57049221 CATGACATAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.28, C:0.12, G:0.35, T:0.25
Consensus pattern (34 bp):
GATCATATAGTAGAGGCGAGGGTTTGCCTGAAGA
Found at i:57052261 original size:16 final size:17
Alignment explanation
Indices: 57052233--57052265 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
57052223 AAATAGATTT
57052233 TTAATTAAAAATTTTAA
1 TTAATTAAAAATTTTAA
57052250 TTAATT-AAAATTTTAA
1 TTAATTAAAAATTTTAA
57052266 ACCTAAACCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
TTAATTAAAAATTTTAA
Found at i:57052492 original size:17 final size:18
Alignment explanation
Indices: 57052453--57052495 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
57052443 AGGTTTGAAA
57052453 ATTTTAATTAATTAAATTT
1 ATTTTAATTAA-TAAATTT
*
57052472 -TTTTAATTAA-GAATTT
1 ATTTTAATTAATAAATTT
57052488 ATTTTAAT
1 ATTTTAAT
57052496 CCCATTTAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 5 0.23
17 7 0.32
18 10 0.45
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (18 bp):
ATTTTAATTAATAAATTT
Found at i:57056445 original size:60 final size:60
Alignment explanation
Indices: 57056370--57056508 Score: 158
Period size: 60 Copynumber: 2.3 Consensus size: 60
57056360 CCAACTGTGT
* * * *
57056370 TGATATGGGCAAGGCCCAATATA-TCTCGA-CTTGTTATA-GGGCTATGGCCTAGATTGATAC
1 TGATATGGGCTAGGCCCAATATACTCT-GATATTG-TA-AGGGGCTATGGCCCAGATTAATAC
* * *
57056430 TGATATGGGCTAGGCCTAGTATACTCTGATATTGTAAGGGGCTATGGCCCAGATTAATAT
1 TGATATGGGCTAGGCCCAATATACTCTGATATTGTAAGGGGCTATGGCCCAGATTAATAC
57056490 TGATATGGGCTAAGGCCCA
1 TGATATGGGCT-AGGCCCA
57056509 GTTAACTCTG
Statistics
Matches: 67, Mismatches: 8, Indels: 7
0.82 0.10 0.09
Matches are distributed among these distances:
59 1 0.01
60 54 0.81
61 12 0.18
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (60 bp):
TGATATGGGCTAGGCCCAATATACTCTGATATTGTAAGGGGCTATGGCCCAGATTAATAC
Found at i:57056796 original size:9 final size:10
Alignment explanation
Indices: 57056770--57056802 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
57056760 ATAAGGCTGC
57056770 TTTAATTATT
1 TTTAATTATT
57056780 TTTAATTATT
1 TTTAATTATT
57056790 TTT-ATTATGT
1 TTTAATTAT-T
57056800 TTT
1 TTT
57056803 GTTAGCTTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 5 0.23
10 17 0.77
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (10 bp):
TTTAATTATT
Found at i:57059493 original size:17 final size:17
Alignment explanation
Indices: 57059471--57059504 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
57059461 CGAGAGCAAG
57059471 AATAACTGACTCTAGGT
1 AATAACTGACTCTAGGT
57059488 AATAACTGACTCTAGGT
1 AATAACTGACTCTAGGT
57059505 TGATTAATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (17 bp):
AATAACTGACTCTAGGT
Found at i:57062044 original size:5 final size:5
Alignment explanation
Indices: 57062012--57062063 Score: 68
Period size: 5 Copynumber: 9.6 Consensus size: 5
57062002 GAAGTTTAAA
57062012 AAAAT AACAAT AAACAT AAAAAT AAAAAT AAAAT AAAAT AAAAT AAAAT
1 AAAAT AA-AAT AAA-AT -AAAAT -AAAAT AAAAT AAAAT AAAAT AAAAT
57062061 AAA
1 AAA
57062064 CGGACTTAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
5 26 0.59
6 15 0.34
7 3 0.07
ACGTcount: A:0.79, C:0.04, G:0.00, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:57071879 original size:42 final size:42
Alignment explanation
Indices: 57071816--57071913 Score: 151
Period size: 42 Copynumber: 2.3 Consensus size: 42
57071806 ATAGCCCAGT
* *
57071816 TATGGTCTTACATGAAATCTCATATTGACGCCATATCCCAAA
1 TATGGTCTTACACGAAATCTCATACTGACGCCATATCCCAAA
* *
57071858 TATGGTCTTACACGAAGTCTCATACTGACGCCATATCCCAGA
1 TATGGTCTTACACGAAATCTCATACTGACGCCATATCCCAAA
*
57071900 TATAGTCTTACACG
1 TATGGTCTTACACG
57071914 TAACCTCAGT
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 51 1.00
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.30
Consensus pattern (42 bp):
TATGGTCTTACACGAAATCTCATACTGACGCCATATCCCAAA
Found at i:57076609 original size:41 final size:41
Alignment explanation
Indices: 57076552--57076651 Score: 146
Period size: 41 Copynumber: 2.4 Consensus size: 41
57076542 TTCAGATATT
* * *
57076552 CCACAGCTCGTGTGAGCAGTATAGTGTATCTATGTTCTGAC
1 CCACAGCTCGTGTGAGCAGCATAGTGCATCTACGTTCTGAC
**
57076593 CCACAGCTCGTGTGAGCAGCATCTTGCATCTACGTTCTGAC
1 CCACAGCTCGTGTGAGCAGCATAGTGCATCTACGTTCTGAC
*
57076634 CCATAGCTCGTGTGAGCA
1 CCACAGCTCGTGTGAGCA
57076652 TTCCGATTTA
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.21, C:0.27, G:0.24, T:0.28
Consensus pattern (41 bp):
CCACAGCTCGTGTGAGCAGCATAGTGCATCTACGTTCTGAC
Found at i:57076675 original size:25 final size:25
Alignment explanation
Indices: 57076640--57076688 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
57076630 TGACCCATAG
* * *
57076640 CTCGTGTGAGCATTCCGATTTACAA
1 CTCGTGAGAGCATACCGATCTACAA
57076665 CTCGTGAGAGCATACCGATCTACA
1 CTCGTGAGAGCATACCGATCTACA
57076689 GCTTGAGTGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (25 bp):
CTCGTGAGAGCATACCGATCTACAA
Found at i:57076700 original size:25 final size:25
Alignment explanation
Indices: 57076640--57076705 Score: 69
Period size: 25 Copynumber: 2.6 Consensus size: 25
57076630 TGACCCATAG
* * *
57076640 CTCGTGTGAGCATTCCGATTTACAA
1 CTCGAGTGAGCATACCGATCTACAA
* * *
57076665 CTCGTGAGAGCATACCGATCTACAG
1 CTCGAGTGAGCATACCGATCTACAA
*
57076690 CTTGAGTGAGCATACC
1 CTCGAGTGAGCATACC
57076706 TATTCATAGC
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (25 bp):
CTCGAGTGAGCATACCGATCTACAA
Found at i:57106695 original size:40 final size:40
Alignment explanation
Indices: 57106651--57106808 Score: 149
Period size: 40 Copynumber: 4.0 Consensus size: 40
57106641 GAATACACGT
* * *
57106651 CACCAGCATGATTGCTCTTCGGGACCTAGCCCGGACATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAA
** * * *
57106691 CACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAA
* * * **
57106731 CACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATGGT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGACAT-AA
* *
57106772 CACTTAGCAC-AAAGC-CTTCGGGACTTAGCCCGGACAT
1 CAC-CAGCACGAATGCTCTTCGGGACTTAGCCCGGACAT
57106809 CATTCAAATA
Statistics
Matches: 99, Mismatches: 17, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
40 85 0.86
41 8 0.08
42 6 0.06
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAA
Found at i:57107150 original size:29 final size:29
Alignment explanation
Indices: 57107111--57107189 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
57107101 CTTAATAATC
*
57107111 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
57107141 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
57107170 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
57107190 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:57107232 original size:43 final size:43
Alignment explanation
Indices: 57107171--57107273 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
57107161 TGCATTTCAA
57107171 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
57107214 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
57107257 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
57107274 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:57109189 original size:37 final size:37
Alignment explanation
Indices: 57109139--57109217 Score: 124
Period size: 37 Copynumber: 2.1 Consensus size: 37
57109129 TTATTACGAA
*
57109139 GTCTTACCCGGACATAA-TCTCCACACGAAGTCATCGG
1 GTCTTACCCGGACAAAATTCT-CACACGAAGTCATCGG
*
57109176 GTCTTACCCGGACAAAATTCTCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCTCACACGAAGTCATCGG
57109213 GTCTT
1 GTCTT
57109218 TAGAGCTCGG
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
37 36 0.92
38 3 0.08
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCTCACACGAAGTCATCGG
Found at i:57109414 original size:47 final size:47
Alignment explanation
Indices: 57109336--57110203 Score: 1511
Period size: 47 Copynumber: 18.5 Consensus size: 47
57109326 CCATTCGGGA
** * * * * * *
57109336 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
57109383 CCTGTCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
57109430 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
57109477 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
57109524 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
57109571 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
57109618 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
57109665 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
57109712 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
57109759 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
57109806 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
57109853 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
57109900 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
57109947 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
57109994 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
57110041 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
57110088 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
57110135 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
57110182 CTTATCACATATATACACTTTC
1 CTTATCACACATATACACTTTC
57110204 TTGGCTGAAT
Statistics
Matches: 788, Mismatches: 33, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 788 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:57116748 original size:21 final size:22
Alignment explanation
Indices: 57116723--57116763 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
57116713 TGTGTTTTTG
*
57116723 ATGTTTAATGGTAGA-AAATGT
1 ATGTTTAATGATAGATAAATGT
*
57116744 ATGTTTGATGATAGATAAAT
1 ATGTTTAATGATAGATAAAT
57116764 AACATTTACC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.39, C:0.00, G:0.22, T:0.39
Consensus pattern (22 bp):
ATGTTTAATGATAGATAAATGT
Found at i:57122739 original size:48 final size:48
Alignment explanation
Indices: 57122668--57122856 Score: 290
Period size: 48 Copynumber: 3.9 Consensus size: 48
57122658 TTAGGGAATT
57122668 CATTGATTTGGCTTCGGGCCATGATATTGGCACTTCGGGTGCGAGTTA
1 CATTGATTTGGCTTCGGGCCATGATATTGGCACTTCGGGTGCGAGTTA
* *
57122716 CATTGATTTGGCTTCAGGCCATGATATTGGCACTTCAGGTGCGAGTTA
1 CATTGATTTGGCTTCGGGCCATGATATTGGCACTTCGGGTGCGAGTTA
* * * *
57122764 CATTGATTTGGCTTTGGGCTATGATATCGGCACTTCGGGTGTGAGCTT-
1 CATTGATTTGGCTTCGGGCCATGATATTGGCACTTCGGGTGCGAG-TTA
* *
57122812 CATTGATTTGGCTTCGGGACATGATATTGGCACTTAGGGTGCGAG
1 CATTGATTTGGCTTCGGGCCATGATATTGGCACTTCGGGTGCGAG
57122857 ACTCCCGAGT
Statistics
Matches: 126, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
48 124 0.98
49 2 0.02
ACGTcount: A:0.18, C:0.17, G:0.31, T:0.34
Consensus pattern (48 bp):
CATTGATTTGGCTTCGGGCCATGATATTGGCACTTCGGGTGCGAGTTA
Found at i:57125747 original size:13 final size:13
Alignment explanation
Indices: 57125731--57125774 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
57125721 TTTTAGGTCA
57125731 AATAAATTATACT
1 AATAAATTATACT
**
57125744 AATAAATGCTA--
1 AATAAATTATACT
57125755 AATAAATTATACT
1 AATAAATTATACT
57125768 AATAAAT
1 AATAAAT
57125775 ATTGAATCTT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
11 9 0.36
13 16 0.64
ACGTcount: A:0.57, C:0.07, G:0.02, T:0.34
Consensus pattern (13 bp):
AATAAATTATACT
Found at i:57127885 original size:24 final size:24
Alignment explanation
Indices: 57127852--57127903 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
57127842 TTCGTAGGTC
*
57127852 AAATAAATTATACTAATAAATGCT
1 AAATAAATTATACTAATAAATACT
* *
57127876 AAATATATTATACTAATAAGTACT
1 AAATAAATTATACTAATAAATACT
57127900 AAAT
1 AAAT
57127904 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.54, C:0.08, G:0.04, T:0.35
Consensus pattern (24 bp):
AAATAAATTATACTAATAAATACT
Found at i:57129829 original size:83 final size:83
Alignment explanation
Indices: 57129733--57129895 Score: 317
Period size: 83 Copynumber: 2.0 Consensus size: 83
57129723 TTTTAGTACC
57129733 TCTCTTATCAAGATAGGTGATCATTACTCATATTTTAACGTGAAAAATGGACTAAGGTCCCACTA
1 TCTCTTATCAAGATAGGTGATCATTACTCATATTTTAACGTGAAAAATGGACTAAGGTCCCACTA
57129798 ATTTATTCTCTTTTAGCA
66 ATTTATTCTCTTTTAGCA
*
57129816 TCTCTTATCAAGATAGGTGATCATTAGTCATATTTTAACGTGAAAAATGGACTAAGGTCCCACTA
1 TCTCTTATCAAGATAGGTGATCATTACTCATATTTTAACGTGAAAAATGGACTAAGGTCCCACTA
57129881 ATTTATTCTCTTTTA
66 ATTTATTCTCTTTTA
57129896 ACATGCAAAA
Statistics
Matches: 79, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 79 1.00
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.38
Consensus pattern (83 bp):
TCTCTTATCAAGATAGGTGATCATTACTCATATTTTAACGTGAAAAATGGACTAAGGTCCCACTA
ATTTATTCTCTTTTAGCA
Found at i:57138390 original size:14 final size:13
Alignment explanation
Indices: 57138357--57138392 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
57138347 ATGTTTAAAA
57138357 ACTTTTATTTATT
1 ACTTTTATTTATT
57138370 A-TTTTATGTTATT
1 ACTTTTAT-TTATT
57138383 ACTTTTATTT
1 ACTTTTATTT
57138393 TATTTTAAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 9 0.43
14 6 0.29
ACGTcount: A:0.22, C:0.06, G:0.03, T:0.69
Consensus pattern (13 bp):
ACTTTTATTTATT
Found at i:57138395 original size:14 final size:14
Alignment explanation
Indices: 57138357--57138396 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
57138347 ATGTTTAAAA
57138357 ACTTTTA-TTTATT
1 ACTTTTATTTTATT
*
57138370 A-TTTTATGTTATT
1 ACTTTTATTTTATT
57138383 ACTTTTATTTTATT
1 ACTTTTATTTTATT
57138397 TTAAGACTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
12 5 0.22
13 7 0.30
14 11 0.48
ACGTcount: A:0.23, C:0.05, G:0.03, T:0.70
Consensus pattern (14 bp):
ACTTTTATTTTATT
Found at i:57143229 original size:27 final size:27
Alignment explanation
Indices: 57143198--57143374 Score: 149
Period size: 27 Copynumber: 6.5 Consensus size: 27
57143188 ATATTGAGCC
* * * *
57143198 CGCACACTCAGTGCTATGTAATCAACT
1 CGCACACTTAGTGCCACGTAATCAAAT
57143225 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCCACGTAATCAAAT
* * **
57143252 CGCACACTTAGTGCCACATAGTCCATTT
1 CGCACACTTAGTGCCACGTAAT-CAAAT
* * ** *
57143280 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCCACGTAATCAAAT
* * **
57143307 CGCACACTTAGTG-CATCATATTCATTT
1 CGCACACTTAGTGCCA-CGTAATCAAAT
* * *
57143334 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCCACGTAATCAAAT
57143361 CGCACACTTAGTGC
1 CGCACACTTAGTGC
57143375 TGTACAATTT
Statistics
Matches: 128, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
26 1 0.01
27 103 0.80
28 24 0.19
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCCACGTAATCAAAT
Found at i:57143337 original size:82 final size:81
Alignment explanation
Indices: 57143219--57143374 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
57143209 TGCTATGTAA
* * **
57143219 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCCACATAGTCCATTTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGT-CAAATCGCA
57143284 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
57143301 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
57143365 CACTTAGTGC
65 CACTTAGTGC
57143375 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 19 0.29
82 46 0.71
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:57143358 original size:54 final size:54
Alignment explanation
Indices: 57143224--57143374 Score: 214
Period size: 54 Copynumber: 2.8 Consensus size: 54
57143214 TGTAATCAAC
* *
57143224 TCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCCACATAGTCCATT
1 TCGCACACTTAGTGCCACATAGTCAAATCGCACACTTAGTG-CACATAGTCCATT
* * * *
57143279 TCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGCATCATA-TTCATT
1 TCGCACACTTAGTGCCACATAGTCAAATCGCACACTTAGTGCA-CATAGTCCATT
*
57143333 TCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGC
1 TCGCACACTTAGTGCCACATAGTCAAATCGCACACTTAGTGC
57143375 TGTACAATTT
Statistics
Matches: 85, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
54 45 0.53
55 40 0.47
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (54 bp):
TCGCACACTTAGTGCCACATAGTCAAATCGCACACTTAGTGCACATAGTCCATT
Found at i:57151324 original size:27 final size:27
Alignment explanation
Indices: 57151293--57151442 Score: 122
Period size: 27 Copynumber: 5.5 Consensus size: 27
57151283 ATATTGAGCC
* * * *
57151293 CGCACACTCAGTGCTATGTAATCAACT
1 CGCACACTTAGTGCCACGTAATCAAAT
57151320 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCCACGTAATCAAAT
* * **
57151347 CGCACACTTAGTGCCACATAGTCCATTT
1 CGCACACTTAGTGCCACGTAAT-CAAAT
* * ** *
57151375 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCCACGTAATCAAAT
* * **
57151402 CGCACACTTAGTG-CATCATATTCATTT
1 CGCACACTTAGTGCCA-CGTAATCAAAT
57151429 CGCACACTTAGTGC
1 CGCACACTTAGTGC
57151443 TGTACAATTT
Statistics
Matches: 105, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
26 1 0.01
27 81 0.77
28 23 0.22
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCCACGTAATCAAAT
Found at i:57151386 original size:55 final size:54
Alignment explanation
Indices: 57151319--57151442 Score: 169
Period size: 55 Copynumber: 2.3 Consensus size: 54
57151309 TGTAATCAAC
*
57151319 TCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCCA-CATAGTCCATT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTG-CATCATA-TCCATT
* ** * *
57151374 TCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGCATCATATTCATT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCATCATATCCATT
57151428 TCGCACACTTAGTGC
1 TCGCACACTTAGTGC
57151443 TGTACAATTT
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
54 22 0.35
55 40 0.65
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.28
Consensus pattern (54 bp):
TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCATCATATCCATT
Found at i:57155076 original size:84 final size:84
Alignment explanation
Indices: 57154935--57155106 Score: 344
Period size: 84 Copynumber: 2.0 Consensus size: 84
57154925 ATATTTTCAC
57154935 ATATTTCATTAATTTATTAAACAATTACTTAGTTTTAACAACGAATTTAAGTAAAAAGGTGATAA
1 ATATTTCATTAATTTATTAAACAATTACTTAGTTTTAACAACGAATTTAAGTAAAAAGGTGATAA
57155000 ATGACATAGGAAAAATCCT
66 ATGACATAGGAAAAATCCT
57155019 ATATTTCATTAATTTATTAAACAATTACTTAGTTTTAACAACGAATTTAAGTAAAAAGGTGATAA
1 ATATTTCATTAATTTATTAAACAATTACTTAGTTTTAACAACGAATTTAAGTAAAAAGGTGATAA
57155084 ATGACATAGGAAAAATCCT
66 ATGACATAGGAAAAATCCT
57155103 ATAT
1 ATAT
57155107 ATTTTTCAGT
Statistics
Matches: 88, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
84 88 1.00
ACGTcount: A:0.45, C:0.09, G:0.10, T:0.35
Consensus pattern (84 bp):
ATATTTCATTAATTTATTAAACAATTACTTAGTTTTAACAACGAATTTAAGTAAAAAGGTGATAA
ATGACATAGGAAAAATCCT
Found at i:57155522 original size:23 final size:22
Alignment explanation
Indices: 57155496--57155550 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
57155486 GGGTTGATGA
57155496 TGAATTGAAATAAGATTATGAAT
1 TGAATTGAAATAAGA-TATGAAT
* * *
57155519 TGAATGTAAAATTATATATGAAT
1 TGAAT-TGAAATAAGATATGAAT
*
57155542 TGGATTGAA
1 TGAATTGAA
57155551 TTGAAATGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
22 3 0.12
23 16 0.62
24 7 0.27
ACGTcount: A:0.45, C:0.00, G:0.18, T:0.36
Consensus pattern (22 bp):
TGAATTGAAATAAGATATGAAT
Found at i:57155678 original size:30 final size:31
Alignment explanation
Indices: 57155593--57155678 Score: 97
Period size: 30 Copynumber: 2.9 Consensus size: 31
57155583 GTGATTGAAC
* *
57155593 TGTGATCGATTACAGGGTATGAA-ATACAAA
1 TGTGAACGATTACAGGGTATGAATATGCAAA
* **
57155623 TGTGACCGATTACAGAATATG-ATATGCAAA
1 TGTGAACGATTACAGGGTATGAATATGCAAA
*
57155653 TGTGAATGA-TACAGGGTATGAATATG
1 TGTGAACGATTACAGGGTATGAATATG
57155679 TTAATAAGTA
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
29 10 0.22
30 36 0.78
ACGTcount: A:0.38, C:0.09, G:0.24, T:0.28
Consensus pattern (31 bp):
TGTGAACGATTACAGGGTATGAATATGCAAA
Found at i:57156904 original size:21 final size:21
Alignment explanation
Indices: 57156878--57156920 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
57156868 AATATGGTGA
57156878 AAGGCAAGTTATGATTGCTGT
1 AAGGCAAGTTATGATTGCTGT
57156899 AAGGCAAGTTATGATTGCTGT
1 AAGGCAAGTTATGATTGCTGT
57156920 A
1 A
57156921 CGAGGTTTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.30, C:0.09, G:0.28, T:0.33
Consensus pattern (21 bp):
AAGGCAAGTTATGATTGCTGT
Found at i:57158471 original size:48 final size:47
Alignment explanation
Indices: 57158400--57158587 Score: 272
Period size: 48 Copynumber: 4.0 Consensus size: 47
57158390 ACCATGCTAA
57158400 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAAAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATG-AAT
*
57158448 ATGTGCCTGTGTAAGACCATGTCTGGGACATAGCATCGGCGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGA-AT
*
57158496 ATGTGCCTGTGTAAGACTATGTCTGGGACATGGCATCGGCGATG-AT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAAT
* * * *
57158542 ATGTGTACTAGTGTAA-ACTATTTCTGGGACATGGCATCGCCGATGA
1 ATGTG-CCT-GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGA
57158588 TTTGTGGATT
Statistics
Matches: 130, Mismatches: 6, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
46 7 0.05
47 30 0.23
48 93 0.72
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (47 bp):
ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAAT
Found at i:57158604 original size:47 final size:47
Alignment explanation
Indices: 57158408--57158626 Score: 203
Period size: 48 Copynumber: 4.6 Consensus size: 47
57158398 AAATGTGCCT
* * *
57158408 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAAATATGT-GCCT-
1 GTGTAA-ACTATGTCTGGGACATGGCATCGCCGATG--ATATGTGGACTA
* * * * *
57158456 GTGTAAGACCATGTCTGGGACATAGCATCGGCGATGATATATGTGCCT-
1 GTGTAA-ACTATGTCTGGGACATGGCATCGCCGATGATATGTG-GACTA
* *
57158504 GTGTAAGACTATGTCTGGGACATGGCATCGGCGATGATATGTGTACTA
1 GTGTAA-ACTATGTCTGGGACATGGCATCGCCGATGATATGTGGACTA
* * *
57158552 GTGTAAACTATTTCTGGGACATGGCATCGCCGATGATTTGTGGATTCA
1 GTGTAAACTATGTCTGGGACATGGCATCGCCGATGATATGTGGACT-A
* *
57158600 -TGTAAAACCATGTCGGGGACATGGCAT
1 GTGT-AAACTATGTCTGGGACATGGCAT
57158627 TGGTACTTTA
Statistics
Matches: 151, Mismatches: 15, Indels: 10
0.86 0.09 0.06
Matches are distributed among these distances:
46 5 0.03
47 40 0.26
48 106 0.70
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (47 bp):
GTGTAAACTATGTCTGGGACATGGCATCGCCGATGATATGTGGACTA
Found at i:57158613 original size:95 final size:95
Alignment explanation
Indices: 57158400--57158626 Score: 264
Period size: 95 Copynumber: 2.4 Consensus size: 95
57158390 ACCATGCTAA
* * *
57158400 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAAATATGTGCCTGTGTAAGAC
1 ATGTGACTATGTAAGACCATGTCTGGGACATGGCATCGGCGATG-AATATGTGACTGTGTAAGAC
*
57158465 CATGTCTGGGACATAGCATCGGCGATGATAT
65 CATGTCTGGGACATAGCATCGCCGATGATAT
* * *
57158496 ATGTGCCTGTGTAAGACTATGTCTGGGACATGGCATCGGCGATG-ATATGTGTACTAGTGTAA-A
1 ATGTGACTATGTAAGACCATGTCTGGGACATGGCATCGGCGATGAATATGTG-ACT-GTGTAAGA
* * *
57158559 CTATTTCTGGGACATGGCATCGCCGATGAT-T
64 CCATGTCTGGGACATAGCATCGCCGATGATAT
* * *
57158590 -TGTGGATTCATGTAAAACCATGTCGGGGACATGGCAT
1 ATGT-GACT-ATGTAAGACCATGTCTGGGACATGGCAT
57158627 TGGTACTTTA
Statistics
Matches: 115, Mismatches: 12, Indels: 9
0.85 0.09 0.07
Matches are distributed among these distances:
93 3 0.03
94 10 0.09
95 53 0.46
96 49 0.43
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.28
Consensus pattern (95 bp):
ATGTGACTATGTAAGACCATGTCTGGGACATGGCATCGGCGATGAATATGTGACTGTGTAAGACC
ATGTCTGGGACATAGCATCGCCGATGATAT
Found at i:57186213 original size:22 final size:24
Alignment explanation
Indices: 57186165--57186219 Score: 62
Period size: 23 Copynumber: 2.4 Consensus size: 24
57186155 ACACTTATTT
* *
57186165 TTAAAAAA-ATATTTAATATATGT
1 TTAAAAAATATATTTAATAAATGA
57186188 TTAAAAAATATATTT-ATAAAT-A
1 TTAAAAAATATATTTAATAAATGA
57186210 TTAAATAAAT
1 TTAAA-AAAT
57186220 GAGATTAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 5 0.18
23 17 0.61
24 6 0.21
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (24 bp):
TTAAAAAATATATTTAATAAATGA
Found at i:57188960 original size:8 final size:8
Alignment explanation
Indices: 57188947--57188971 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
57188937 TTTTAAATGA
57188947 TATTTTAT
1 TATTTTAT
57188955 TATTTTAT
1 TATTTTAT
57188963 TATTTTAT
1 TATTTTAT
57188971 T
1 T
57188972 TAGTATATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:57191133 original size:46 final size:46
Alignment explanation
Indices: 57191061--57191234 Score: 199
Period size: 46 Copynumber: 3.8 Consensus size: 46
57191051 TTCTGAAATG
* *
57191061 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAGGATATA
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACAGGACATA
* * * *
57191107 AAAT-ATGTAAGACCATGGTTGAAAGATACCGTGGCAA-TGTAACATG
1 AAATGA-GTAAGACCATGGTTGAAAGATACCATGGCAACAG-GACATA
** ** *
57191153 AAATGAACAAGACCATGGTTGAAAGATACCATGGCAACCTGACAGA
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACAGGACATA
* *
57191199 AAATGAGTAAGACCATAGTTGAAAGATACTATGGCA
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
57191235 TCATGTCAAA
Statistics
Matches: 106, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
45 1 0.01
46 104 0.98
47 1 0.01
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.21
Consensus pattern (46 bp):
AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACAGGACATA
Found at i:57191540 original size:16 final size:17
Alignment explanation
Indices: 57191519--57191551 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
57191509 ATGATGGAGC
57191519 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
57191535 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
57191552 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:57192531 original size:24 final size:24
Alignment explanation
Indices: 57192504--57192551 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
57192494 ACCAGCTATA
57192504 GAACCCACGAAACGGGTTCATAGG
1 GAACCCACGAAACGGGTTCATAGG
57192528 GAACCCACGAAACGGGTTCATAGG
1 GAACCCACGAAACGGGTTCATAGG
57192552 TTAAGTTATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.25, G:0.29, T:0.12
Consensus pattern (24 bp):
GAACCCACGAAACGGGTTCATAGG
Found at i:57195885 original size:48 final size:48
Alignment explanation
Indices: 57195827--57195920 Score: 170
Period size: 48 Copynumber: 2.0 Consensus size: 48
57195817 TACAAAAAAG
57195827 TTCAGATAAAAATTTTGAATTGTCTCATTCACAAACTAAGCTTTTAAA
1 TTCAGATAAAAATTTTGAATTGTCTCATTCACAAACTAAGCTTTTAAA
* *
57195875 TTCAGGTAAAACTTTTGAATTGTCTCATTCACAAACTAAGCTTTTA
1 TTCAGATAAAAATTTTGAATTGTCTCATTCACAAACTAAGCTTTTA
57195921 CCATTTATTT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (48 bp):
TTCAGATAAAAATTTTGAATTGTCTCATTCACAAACTAAGCTTTTAAA
Found at i:57199170 original size:26 final size:25
Alignment explanation
Indices: 57199141--57199215 Score: 105
Period size: 26 Copynumber: 2.9 Consensus size: 25
57199131 CCTAATACCA
*
57199141 ACCCAACACCCAAACAAACCCCAATT
1 ACCCAAAACCCAAACAAA-CCCAATT
57199167 ACCCAAAACCCAAAACAAACCCAATT
1 ACCCAAAACCC-AAACAAACCCAATT
* *
57199193 CCCCAAAACCCAAACAAGCCCAA
1 ACCCAAAACCCAAACAAACCCAA
57199216 CGAAACTCAA
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
25 11 0.24
26 27 0.60
27 7 0.16
ACGTcount: A:0.49, C:0.44, G:0.01, T:0.05
Consensus pattern (25 bp):
ACCCAAAACCCAAACAAACCCAATT
Found at i:57202852 original size:34 final size:34
Alignment explanation
Indices: 57202809--57202877 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
57202799 CCTCGTACTA
57202809 TGTATGATTATGCTAAACCTACTTTAACAGGAGC
1 TGTATGATTATGCTAAACCTACTTTAACAGGAGC
*
57202843 TGTATGATTATGCTAAACCTACTTTAACTGGAGC
1 TGTATGATTATGCTAAACCTACTTTAACAGGAGC
57202877 T
1 T
57202878 AAATCGAGTA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.35
Consensus pattern (34 bp):
TGTATGATTATGCTAAACCTACTTTAACAGGAGC
Found at i:57205698 original size:55 final size:55
Alignment explanation
Indices: 57205592--57205720 Score: 152
Period size: 55 Copynumber: 2.3 Consensus size: 55
57205582 CAATCCTGTC
* * *
57205592 AAAATAACACGGGCGTGTGACACGCCCGTGCCCACTACCCGTGGTCAAAACTATA
1 AAAATGACACGGGCATGTGACACGCCCGTGCCCACCACCCGTGGTCAAAACTATA
* * * ** * *
57205647 AAAATGACATGGGCATGTGACACGCCCGTGCCTACCATCCGTGGTTGAAACTGTC
1 AAAATGACACGGGCATGTGACACGCCCGTGCCCACCACCCGTGGTCAAAACTATA
57205702 AAAA-GAACACGGGCATGTG
1 AAAATG-ACACGGGCATGTG
57205721 CATATATACA
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
54 1 0.02
55 61 0.98
ACGTcount: A:0.30, C:0.27, G:0.25, T:0.18
Consensus pattern (55 bp):
AAAATGACACGGGCATGTGACACGCCCGTGCCCACCACCCGTGGTCAAAACTATA
Found at i:57207419 original size:29 final size:26
Alignment explanation
Indices: 57207370--57207432 Score: 74
Period size: 26 Copynumber: 2.3 Consensus size: 26
57207360 GACTTATATT
*
57207370 TTTTATTTTTATTTTTTTAC-TTTTA
1 TTTTATTTATATTTTTTTACTTTTTA
57207395 TCTTTATTTATATTTTTAAATTACTTTTTA
1 T-TTTATTTATATTTTT---TTACTTTTTA
57207425 TTTTATTT
1 TTTTATTT
57207433 CTCTTTAATA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
25 1 0.03
26 14 0.44
29 11 0.34
30 6 0.19
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.75
Consensus pattern (26 bp):
TTTTATTTATATTTTTTTACTTTTTA
Found at i:57225685 original size:44 final size:43
Alignment explanation
Indices: 57225600--57225694 Score: 111
Period size: 44 Copynumber: 2.2 Consensus size: 43
57225590 CCTGCTATAG
*
57225600 AACATGACTTTTAGCGGCGCTTCTCCCAAAAACACCTCTAAAA
1 AACATGACTTTTAGCGGCGCTTCTCCCAAAAACACCACTAAAA
* * * * *
57225643 AACATGATCTTTTGGCGGTGCTT-TCCCTACAAACCCCACTAAAG
1 AACATGA-CTTTTAGCGGCGCTTCTCCC-AAAAACACCACTAAAA
57225687 AACATGAC
1 AACATGAC
57225695 CTTCCCACAA
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
43 12 0.27
44 32 0.73
ACGTcount: A:0.33, C:0.29, G:0.14, T:0.24
Consensus pattern (43 bp):
AACATGACTTTTAGCGGCGCTTCTCCCAAAAACACCACTAAAA
Found at i:57225772 original size:43 final size:43
Alignment explanation
Indices: 57225698--57225820 Score: 147
Period size: 43 Copynumber: 2.9 Consensus size: 43
57225688 ACATGACCTT
* * * *
57225698 CCCACAAACGCCGCTATAGAATATAATCTTTAGCGGCGCTTAC
1 CCCACAAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTAC
** * * * *
57225741 CTTACAAACACCGCTAAAGAACATGACCTTTAACGGTGCTTTC
1 CCCACAAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTAC
*
57225784 CCCACAAATGCCGCTAAAGAACATGACCTTTAGCGGC
1 CCCACAAACGCCGCTAAAGAACATGACCTTTAGCGGC
57225821 ACTTTTCCCA
Statistics
Matches: 64, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
43 64 1.00
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.22
Consensus pattern (43 bp):
CCCACAAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTAC
Found at i:57225852 original size:43 final size:43
Alignment explanation
Indices: 57225751--57225845 Score: 129
Period size: 43 Copynumber: 2.2 Consensus size: 43
57225741 CTTACAAACA
**
57225751 CCGCTAAAGAACATGACCTTTAACGGTGCTTTCCCCACAAATG
1 CCGCTAAAGAACATGACCTTTAACGGCACTTTCCCCACAAATG
* *
57225794 CCGCTAAAGAACATGACCTTTAGCGGCACTTTTCCCA-AAATCG
1 CCGCTAAAGAACATGACCTTTAACGGCACTTTCCCCACAAAT-G
*
57225837 TCGCTAAAG
1 CCGCTAAAG
57225846 GTCATGAAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
42 4 0.09
43 42 0.91
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (43 bp):
CCGCTAAAGAACATGACCTTTAACGGCACTTTCCCCACAAATG
Found at i:57232815 original size:6 final size:6
Alignment explanation
Indices: 57232793--57232876 Score: 89
Period size: 6 Copynumber: 14.0 Consensus size: 6
57232783 AGGTAAAATT
* * * * *
57232793 AATAAA AACATAA AATGAA AATGAA AATGAA AATAAA AATGAA AATAAA
1 AATAAA AATA-AA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
* *
57232842 AATAAA AATAAA AATAAA GAT-AA AATAAA ACTAAA
1 AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
57232877 CATCATCATC
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
5 4 0.06
6 59 0.88
7 4 0.06
ACGTcount: A:0.75, C:0.02, G:0.06, T:0.17
Consensus pattern (6 bp):
AATAAA
Found at i:57235055 original size:40 final size:40
Alignment explanation
Indices: 57234972--57235274 Score: 396
Period size: 40 Copynumber: 7.6 Consensus size: 40
57234962 TTGAATGCTG
* * * * * *
57234972 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
57235012 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
57235052 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
57235092 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
57235132 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
57235172 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
57235212 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
57235251 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
57235275 TGAACGAGGA
Statistics
Matches: 241, Mismatches: 19, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 35 0.15
40 198 0.82
41 8 0.03
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:57243038 original size:40 final size:40
Alignment explanation
Indices: 57242955--57243257 Score: 396
Period size: 40 Copynumber: 7.6 Consensus size: 40
57242945 TTGAATGCTG
* * * * * *
57242955 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
57242995 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
57243035 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
57243075 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
57243115 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
57243155 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
57243195 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
57243234 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
57243258 TGAACGAGGA
Statistics
Matches: 241, Mismatches: 19, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 35 0.15
40 198 0.82
41 8 0.03
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:57244594 original size:1 final size:1
Alignment explanation
Indices: 57244585--57244676 Score: 166
Period size: 1 Copynumber: 92.0 Consensus size: 1
57244575 AAGTTTTTCA
*
57244585 TTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
*
57244650 TTTTTTTTTTTTTTTTTTTTATTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTT
57244677 GTTTGTTAAC
Statistics
Matches: 87, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
1 87 1.00
ACGTcount: A:0.01, C:0.00, G:0.01, T:0.98
Consensus pattern (1 bp):
T
Found at i:57247072 original size:27 final size:27
Alignment explanation
Indices: 57247041--57247218 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
57247031 TAAATTGTAC
57247041 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
57247068 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
57247094 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
* *
57247122 GGCACTAAGTGTGCGAGTTTGACTATAT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
57247150 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
57247177 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
57247204 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
57247219 GACTCAAATA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 105 0.83
28 22 0.17
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:57247156 original size:82 final size:81
Alignment explanation
Indices: 57247042--57247197 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
57247032 AAATTGTACA
* * *
57247042 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATATAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
57247106 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
57247123 GCACTAAGTGTGCGAGTTTGACTATATAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATATAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
57247188 TGCGAGTTGA
65 TGCGAATTGA
57247198 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATATAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:57247209 original size:82 final size:81
Alignment explanation
Indices: 57247038--57247218 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
57247028 GATTAAATTG
* * *
57247038 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATATAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
57247103 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
57247119 TGCGGCACTAAGTGTGCGAGTTTGACTATATAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATATAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
57247183 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
57247201 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
57247219 GACTCAAATA
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATATAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:57258703 original size:40 final size:40
Alignment explanation
Indices: 57258620--57258922 Score: 396
Period size: 40 Copynumber: 7.6 Consensus size: 40
57258610 TTGAATGCTG
* * * * * *
57258620 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
57258660 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
57258700 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
57258740 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
57258780 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
57258820 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
57258860 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
57258899 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
57258923 TGAACGAGGA
Statistics
Matches: 241, Mismatches: 19, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 35 0.15
40 198 0.82
41 8 0.03
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:57272383 original size:49 final size:47
Alignment explanation
Indices: 57272197--57272564 Score: 585
Period size: 47 Copynumber: 7.7 Consensus size: 47
57272187 TTAGGATTCT
* *
57272197 ATGTGATGGATGTGAACA-TGCATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
57272244 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
57272291 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
57272338 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
57272387 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
57272436 ATGTGATGAATGTGAAAGTGCATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
57272483 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
57272530 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
57272565 TCCCGAAGGG
Statistics
Matches: 304, Mismatches: 14, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
46 1 0.00
47 207 0.68
49 96 0.32
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:57272448 original size:192 final size:190
Alignment explanation
Indices: 57272218--57272564 Score: 604
Period size: 192 Copynumber: 1.8 Consensus size: 190
57272208 GTGAACATGC
*
57272218 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGCATATATGTGATAAGGCCT
* * * *
57272283 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
66 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAA
57272348 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
131 TGTGAAAGTGTATA-A-ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
57272410 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGCATATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGCATATATGTGATAAGGCCT
* * *
57272475 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGA
66 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAA
57272540 TGTGAAAGTGTATAAATGTGATAAG
131 TGTGAAAGTGTATAAATGTGATAAG
57272565 TCCCGAAGGG
Statistics
Matches: 147, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
190 10 0.07
191 1 0.01
192 136 0.93
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (190 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGCATATATGTGATAAGGCCT
AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAA
TGTGAAAGTGTATAAATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:57272739 original size:37 final size:37
Alignment explanation
Indices: 57272683--57272761 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
57272673 CCGAGCTCTA
* *
57272683 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
57272720 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
57272757 AAGAC
1 AAGAC
57272762 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:57278644 original size:36 final size:36
Alignment explanation
Indices: 57278596--57278665 Score: 122
Period size: 36 Copynumber: 1.9 Consensus size: 36
57278586 TTAGGGAAAC
*
57278596 ATAAAGCTAAAATATAACCATAAAAAAATTTAAAAT
1 ATAAAGCAAAAATATAACCATAAAAAAATTTAAAAT
*
57278632 ATAAAGCAAAAATATAACCATAAAAAATTTTAAA
1 ATAAAGCAAAAATATAACCATAAAAAAATTTAAA
57278666 CAAATTGAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.64, C:0.09, G:0.03, T:0.24
Consensus pattern (36 bp):
ATAAAGCAAAAATATAACCATAAAAAAATTTAAAAT
Found at i:57280691 original size:43 final size:43
Alignment explanation
Indices: 57280612--57280812 Score: 237
Period size: 43 Copynumber: 4.7 Consensus size: 43
57280602 CAATGTCATA
* * * *
57280612 TCCCAGATATGGTATTACATGCT-ATCAC-ATATCGATGCCAATG
1 TCCCAGACATGGTCTTACACG-TAATCACAATA-CAATGCCAATG
* ** * *
57280655 TCCTAGACATGGTCTTACACAAAATCA-TATAACGATGCCAATG
1 TCCCAGACATGGTCTTACACGTAATCACAAT-ACAATGCCAATG
*
57280698 TCCTAGACATGGTCTTACACGTAATCACAATACAATGCCAATG
1 TCCCAGACATGGTCTTACACGTAATCACAATACAATGCCAATG
*
57280741 TCCCAGACATGGTCTTACATGTAATCACAATACAATGCCAATG
1 TCCCAGACATGGTCTTACACGTAATCACAATACAATGCCAATG
* *
57280784 TCCCAAACATGGTCTTACATGTAATCACA
1 TCCCAGACATGGTCTTACACGTAATCACA
57280813 TCTCGGTAAT
Statistics
Matches: 141, Mismatches: 13, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
43 138 0.98
44 3 0.02
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.27
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACGTAATCACAATACAATGCCAATG
Found at i:57283779 original size:48 final size:48
Alignment explanation
Indices: 57283719--57283937 Score: 176
Period size: 48 Copynumber: 4.6 Consensus size: 48
57283709 TGTGTGCTAA
* *
57283719 TGTAAGACCATGTGTGGGACATGGCATCAGACACATTATGTGAGCCAG
1 TGTAAGACCATGTTTGGGACATGGCATCAGACTCATTATGTGAGCCAG
* * * * *
57283767 TGTAAGACCATGTTT-GGACATGGCATCGGTATTGA-TATGTGTGCTAG
1 TGTAAGACCATGTTTGGGACATGGCATCAG-ACTCATTATGTGAGCCAG
* * * * * * * * *
57283814 TGTAAGACAATGTCTGGGACATGACATCAGCATTGA-GACGAGAGCTAG
1 TGTAAGACCATGTTTGGGACATGGCATCAG-ACTCATTATGTGAGCCAG
* ** * ***
57283862 TGTAAGACC-TCGTTTGGGATATGGCATTGGCCTCAACGTGTGAGCCAG
1 TGTAAGACCAT-GTTTGGGACATGGCATCAGACTCATTATGTGAGCCAG
57283910 TGTAAGACCATGTTTGGGACATGGCATC
1 TGTAAGACCATGTTTGGGACATGGCATC
57283938 GGCAATTTAC
Statistics
Matches: 134, Mismatches: 32, Indels: 10
0.76 0.18 0.06
Matches are distributed among these distances:
47 39 0.29
48 94 0.70
49 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.26
Consensus pattern (48 bp):
TGTAAGACCATGTTTGGGACATGGCATCAGACTCATTATGTGAGCCAG
Found at i:57283877 original size:95 final size:94
Alignment explanation
Indices: 57283703--57283888 Score: 216
Period size: 95 Copynumber: 1.9 Consensus size: 94
57283693 TGACATTTGG
* * * * *
57283703 TTGACATGTGTGCTAATGTAAGACCATGTGTGGGACATGGCATCAGACACATTATGTGAGCCAGT
1 TTGACATGTGTGCTAATGTAAGACAATGTCTGGGACATGACATCAG--ACATTACGAGAGCCAGT
57283768 GTAAGACCATGTTT-GGACATGGCATCGGTA
64 GTAAGACCATGTTTGGGACATGGCATCGGTA
* * *
57283798 TTGATATGTGTGCTAGTGTAAGACAATGTCTGGGACATGACATCAG-CATTGAGACGAGAGCTAG
1 TTGACATGTGTGCTAATGTAAGACAATGTCTGGGACATGACATCAGACATT---ACGAGAGCCAG
*
57283862 TGTAAGACC-TCGTTTGGGATATGGCAT
63 TGTAAGACCAT-GTTTGGGACATGGCAT
57283889 TGGCCTCAAC
Statistics
Matches: 77, Mismatches: 9, Indels: 9
0.81 0.09 0.09
Matches are distributed among these distances:
92 4 0.05
94 1 0.01
95 62 0.81
96 10 0.13
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (94 bp):
TTGACATGTGTGCTAATGTAAGACAATGTCTGGGACATGACATCAGACATTACGAGAGCCAGTGT
AAGACCATGTTTGGGACATGGCATCGGTA
Found at i:57291516 original size:15 final size:15
Alignment explanation
Indices: 57291495--57291528 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
57291485 AGAGTTAGGG
*
57291495 AAAAAAAGAAGAAAGT
1 AAAAAAA-AAAAAAGT
57291511 AAAAAAAAAAAAAGT
1 AAAAAAAAAAAAAGT
57291526 AAA
1 AAA
57291529 GATTATTTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.82, C:0.00, G:0.12, T:0.06
Consensus pattern (15 bp):
AAAAAAAAAAAAAGT
Found at i:57292282 original size:21 final size:21
Alignment explanation
Indices: 57292258--57292297 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
57292248 AAAGAAAATA
57292258 GCAACAAAACAATAAAAAACG
1 GCAACAAAACAATAAAAAACG
* * *
57292279 GCAAGAAAATAGTAAAAAA
1 GCAACAAAACAATAAAAAA
57292298 AACATTTTTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.68, C:0.12, G:0.12, T:0.07
Consensus pattern (21 bp):
GCAACAAAACAATAAAAAACG
Found at i:57297331 original size:14 final size:16
Alignment explanation
Indices: 57297312--57297355 Score: 56
Period size: 14 Copynumber: 2.8 Consensus size: 16
57297302 GGCAACCTAT
57297312 ATTTATTT-ATTTT-A
1 ATTTATTTAATTTTGA
57297326 ATTTATTTAATTTTGA
1 ATTTATTTAATTTTGA
*
57297342 ATTCAGTTTAATTT
1 ATTTA-TTTAATTT
57297356 ATATTGAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 8 0.31
15 5 0.19
16 5 0.19
17 8 0.31
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.64
Consensus pattern (16 bp):
ATTTATTTAATTTTGA
Found at i:57299702 original size:6 final size:6
Alignment explanation
Indices: 57299693--57299726 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
57299683 TCGAAGCATA
57299693 CTGAGG CTGAGG CTGAGG CTGAGG CTGAGG CTGA
1 CTGAGG CTGAGG CTGAGG CTGAGG CTGAGG CTGA
57299727 ATTTTAATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.18, C:0.18, G:0.47, T:0.18
Consensus pattern (6 bp):
CTGAGG
Found at i:57301095 original size:17 final size:17
Alignment explanation
Indices: 57301069--57301103 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
57301059 GGTAACGGTA
57301069 AATTTTAATAT-ATTCT
1 AATTTTAATATAATTCT
57301085 AATTGTTAATATAATTCT
1 AATT-TTAATATAATTCT
57301103 A
1 A
57301104 GAATTATAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.24
17 7 0.41
18 6 0.35
ACGTcount: A:0.40, C:0.06, G:0.03, T:0.51
Consensus pattern (17 bp):
AATTTTAATATAATTCT
Found at i:57301334 original size:11 final size:11
Alignment explanation
Indices: 57301313--57301347 Score: 61
Period size: 11 Copynumber: 3.1 Consensus size: 11
57301303 AGGTTTTCTC
57301313 AAAAGAAAAAAG
1 AAAA-AAAAAAG
57301325 AAAAAAAAAAG
1 AAAAAAAAAAG
57301336 AAAAAAAAAAG
1 AAAAAAAAAAG
57301347 A
1 A
57301348 GATAAATTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 19 0.83
12 4 0.17
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Done.