Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 176 of 255
Found at i:58055535 original size:27 final size:26
Alignment explanation
Indices: 58055487--58055538 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
58055477 GCGAGGCTGC
*
58055487 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
58055513 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
58055539 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:58055807 original size:27 final size:27
Alignment explanation
Indices: 58055772--58056018 Score: 300
Period size: 27 Copynumber: 9.2 Consensus size: 27
58055762 TTAACACCGT
* * *
58055772 AGGGGAAAATGGTAATTTTATAAATCG
1 AGGGTAAAACGGTAATTCTATAAATCG
* * *
58055799 AAGGTAAAACGGTAATTCAATAAATTG
1 AGGGTAAAACGGTAATTCTATAAATCG
* *
58055826 AGGGTAAAATGGTAATTCTATAAATCA
1 AGGGTAAAACGGTAATTCTATAAATCG
*
58055853 AGGGTAAAATGGTAATTCTATAAATCG
1 AGGGTAAAACGGTAATTCTATAAATCG
** *
58055880 AGGGTAAAATAGT-ATT-TGTAAATCG
1 AGGGTAAAACGGTAATTCTATAAATCG
*
58055905 AGGGTAAAACGGTAATTCTATAAATCA
1 AGGGTAAAACGGTAATTCTATAAATCG
*
58055932 AGGGTAAAACGGTAATTCTATAAATTG
1 AGGGTAAAACGGTAATTCTATAAATCG
* *
58055959 AGGGTAAAACAGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTATAAATCG
* * * *
58055986 AGGATAAAACAGTAATTTTTTAAATCG
1 AGGGTAAAACGGTAATTCTATAAATCG
58056013 AGGGTA
1 AGGGTA
58056019 TTTCAGTAAT
Statistics
Matches: 191, Mismatches: 27, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
25 19 0.10
26 6 0.03
27 166 0.87
ACGTcount: A:0.43, C:0.07, G:0.21, T:0.29
Consensus pattern (27 bp):
AGGGTAAAACGGTAATTCTATAAATCG
Found at i:58055977 original size:106 final size:108
Alignment explanation
Indices: 58055783--58056018 Score: 332
Period size: 106 Copynumber: 2.2 Consensus size: 108
58055773 GGGGAAAATG
* * ** *
58055783 GTAATTTTATAAATCGAAGGTAAAACGGTAATTCAATAAATTGAGGGTAAAATGGTAATTCTATA
1 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCAATAAATCAAGGGTAAAACGGTAATTCTATA
** * *
58055848 AATCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATA
66 AATCAAGGGTAAAACAGTAATTCTATAAATCGAGGATAAAACA
*
58055891 GT-A-TTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAACGGTAATTCTATA
1 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCAATAAATCAAGGGTAAAACGGTAATTCTATA
** *
58055954 AATTGAGGGTAAAACAGTAATTCTGTAAATCGAGGATAAAACA
66 AATCAAGGGTAAAACAGTAATTCTATAAATCGAGGATAAAACA
*
58055997 GTAATTTTTTAAATCGAGGGTA
1 GTAATTTTGTAAATCGAGGGTA
58056019 TTTCAGTAAT
Statistics
Matches: 112, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
106 92 0.82
107 2 0.02
108 18 0.16
ACGTcount: A:0.42, C:0.08, G:0.20, T:0.30
Consensus pattern (108 bp):
GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCAATAAATCAAGGGTAAAACGGTAATTCTATA
AATCAAGGGTAAAACAGTAATTCTATAAATCGAGGATAAAACA
Found at i:58059208 original size:22 final size:22
Alignment explanation
Indices: 58059183--58059226 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
58059173 AAATATTAAC
*
58059183 ATAATGAATTTTAAATAATTTT
1 ATAATAAATTTTAAATAATTTT
* *
58059205 ATAATAAATTTTTATTAATTTT
1 ATAATAAATTTTAAATAATTTT
58059227 GATTATTTTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (22 bp):
ATAATAAATTTTAAATAATTTT
Found at i:58072390 original size:28 final size:29
Alignment explanation
Indices: 58072358--58072412 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
58072348 CTAAAATACT
* *
58072358 GATAT-CATGGTCTGAAGCCAAATTAGCC
1 GATATGCATGGCCCGAAGCCAAATTAGCC
*
58072386 GATATGCATGGCCCGAATCCAAATTAG
1 GATATGCATGGCCCGAAGCCAAATTAG
58072413 TTTATCTCAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 5 0.22
29 18 0.78
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.24
Consensus pattern (29 bp):
GATATGCATGGCCCGAAGCCAAATTAGCC
Found at i:58072546 original size:29 final size:29
Alignment explanation
Indices: 58072504--58072561 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
58072494 CTATTCTTAA
58072504 GGTTCAACCGGACTTCCAATTGTTGAATC
1 GGTTCAACCGGACTTCCAATTGTTGAATC
*
58072533 GGTTCAACCGGACTTCTAATTGTTGAATC
1 GGTTCAACCGGACTTCCAATTGTTGAATC
58072562 ATCGTCGAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33
Consensus pattern (29 bp):
GGTTCAACCGGACTTCCAATTGTTGAATC
Found at i:58073855 original size:36 final size:36
Alignment explanation
Indices: 58073815--58073887 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
58073805 CAGAAGACTT
58073815 TTATTAAATCTATGCATTTATTTTTTAGCTCTTTGA
1 TTATTAAATCTATGCATTTATTTTTTAGCTCTTTGA
58073851 TTATTAAATCTATGCATTTATTTTTTAGCTCTTTGA
1 TTATTAAATCTATGCATTTATTTTTTAGCTCTTTGA
58073887 T
1 T
58073888 CTCTCGAGCT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.25, C:0.11, G:0.08, T:0.56
Consensus pattern (36 bp):
TTATTAAATCTATGCATTTATTTTTTAGCTCTTTGA
Found at i:58090765 original size:27 final size:26
Alignment explanation
Indices: 58090724--58090838 Score: 104
Period size: 27 Copynumber: 4.3 Consensus size: 26
58090714 CAGCATGGCT
*
58090724 ACCAGAACAGATATTGTGACAGAGTC
1 ACCAGAACAGATATTGTGACAGAGCC
* **
58090750 ACCAGATACGGATATTGTGGGAGAGCC
1 ACCAGA-ACAGATATTGTGACAGAGCC
* *
58090777 ACCAGAACAGATATTTGTGGCATAGCC
1 ACCAGAACAGATA-TTGTGACAGAGCC
* * * *
58090804 ACCAAAAACAAATATTTGTGGCATAGCC
1 ACC-AGAACAGATA-TTGTGACAGAGCC
58090832 ACCAGAA
1 ACCAGAA
58090839 TGCTTCCTCC
Statistics
Matches: 76, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
26 12 0.16
27 39 0.51
28 25 0.33
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (26 bp):
ACCAGAACAGATATTGTGACAGAGCC
Found at i:58090822 original size:28 final size:28
Alignment explanation
Indices: 58090764--58090835 Score: 101
Period size: 28 Copynumber: 2.6 Consensus size: 28
58090754 GATACGGATA
* * * *
58090764 TTGTGGGAGAGCCACC-AGAACAGATAT
1 TTGTGGCATAGCCACCAAAAACAAATAT
58090791 TTGTGGCATAGCCACCAAAAACAAATAT
1 TTGTGGCATAGCCACCAAAAACAAATAT
58090819 TTGTGGCATAGCCACCA
1 TTGTGGCATAGCCACCA
58090836 GAATGCTTCC
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
27 14 0.35
28 26 0.65
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.21
Consensus pattern (28 bp):
TTGTGGCATAGCCACCAAAAACAAATAT
Found at i:58090836 original size:55 final size:53
Alignment explanation
Indices: 58090724--58090838 Score: 131
Period size: 54 Copynumber: 2.1 Consensus size: 53
58090714 CAGCATGGCT
* * * ** *
58090724 ACCAGAACAGATATTGTGACAGAGTCACCAGATACGGATATTGTGGGAGAGCC
1 ACCAGAACAGATATTGTGACAGAGCCACCAAAAACAAATATTGTGGCAGAGCC
* * *
58090777 ACCAGAACAGATATTTGTGGCATAGCCACCAAAAACAAATATTTGTGGCATAGCC
1 ACCAGAACAGATA-TTGTGACAGAGCCACCAAAAACAAATA-TTGTGGCAGAGCC
58090832 ACCAGAA
1 ACCAGAA
58090839 TGCTTCCTCC
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
53 13 0.25
54 20 0.39
55 18 0.35
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (53 bp):
ACCAGAACAGATATTGTGACAGAGCCACCAAAAACAAATATTGTGGCAGAGCC
Found at i:58097070 original size:56 final size:56
Alignment explanation
Indices: 58096984--58097103 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
58096974 ACAAGGGATG
58096984 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
58097040 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
58097096 ATGGGCAA
1 ATGGGCAA
58097104 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:58098606 original size:47 final size:47
Alignment explanation
Indices: 58098552--58099199 Score: 887
Period size: 47 Copynumber: 13.6 Consensus size: 47
58098542 TATTTGAATA
*
58098552 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
58098599 AATGTGAAAGTGTATATATATGTGATAAGGCCTG-ATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCC-GAATGGCCAATGTGATG
* *
58098648 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
58098697 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
58098744 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
58098793 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
58098840 AATGTGAAAGTGTATATATATGTGTGATAAGGCCAAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATA--TGTGATAAGGCCGAATGGCCAATGTGATG
* *
58098891 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
58098938 AATGTGAACA-TGCATATATGAGATAAGGCCAAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
58098985 AATGTGAACA-TG-AGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTA-TATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
58099032 AATGTGAACA-TGTGTATGTGTGATAAGGCAGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
58099079 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
58099126 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
58099173 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
58099200 TCCCGAAGGG
Statistics
Matches: 556, Mismatches: 31, Indels: 28
0.90 0.05 0.05
Matches are distributed among these distances:
46 2 0.00
47 368 0.66
49 148 0.27
51 37 0.07
52 1 0.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:58098858 original size:145 final size:143
Alignment explanation
Indices: 58098552--58099199 Score: 890
Period size: 145 Copynumber: 4.5 Consensus size: 143
58098542 TATTTGAATA
*
58098552 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* *
58098617 TATGTGATAAGGCCTG-ATGGCCAATGTGATGAATGTGAA-AGTGTATATATATGTGATAAGGCC
66 TATGTGATAAGGCC-GAATGGCCAATGTGATGAATGTGAACA-TG--CATATATGAGATAAGGCC
* *
58098680 TAATGGCCGATGTGATG
127 GAATGGCCAATGTGATG
* *
58098697 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* * * *
58098762 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAA
66 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGCATATATGAGATAAGGCCGAA
*
58098826 TGGCCAATGTGATA
130 TGGCCAATGTGATG
*
58098840 AATGTGAAAGTGTATATATATGTGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAACA-TG-
1 AATGTGAAAGTG--TATATA--TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGT
* *
58098903 -TGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGC
61 ATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGC
*
58098967 CAAATGGCCAATGTGATG
126 CGAATGGCCAATGTGATG
*
58098985 AATGTGAACA-TG-AGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG--T
1 AATGTGAA-AGTGTA-TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTAT
* * *
58099045 GTATGTGTGATAAGGCAGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCG
63 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCG
58099110 AATGGCCAATGTGATG
128 AATGGCCAATGTGATG
* *
58099126 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAAGTGTATA-A
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
58099190 -ATGTGATAAG
66 TATGTGATAAG
58099200 TCCCGAAGGG
Statistics
Matches: 464, Mismatches: 25, Indels: 32
0.89 0.05 0.06
Matches are distributed among these distances:
140 2 0.00
141 179 0.39
142 3 0.01
143 48 0.10
145 192 0.41
146 2 0.00
147 37 0.08
148 1 0.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (143 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAAT
GGCCAATGTGATG
Found at i:58104629 original size:43 final size:43
Alignment explanation
Indices: 58104567--58104670 Score: 131
Period size: 43 Copynumber: 2.4 Consensus size: 43
58104557 AAAGCTTGTA
* *
58104567 CAATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAATAT
1 CAATGCCAACGTCCCAGACAGGGTCTTACATGAAATCAAATAT
* *
58104610 CAATGCC-ACTGTCCTAGACAGGGTCTTACATGAAATCAAAT-C
1 CAATGCCAAC-GTCCCAGACAGGGTCTTACATGAAATCAAATAT
* *
58104652 CGATGCCAACGTCTCAGAC
1 CAATGCCAACGTCCCAGAC
58104671 TTTGTCTTAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
42 15 0.29
43 37 0.71
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.23
Consensus pattern (43 bp):
CAATGCCAACGTCCCAGACAGGGTCTTACATGAAATCAAATAT
Found at i:58110004 original size:47 final size:48
Alignment explanation
Indices: 58109953--58110073 Score: 131
Period size: 47 Copynumber: 2.6 Consensus size: 48
58109943 TACCTTGGTT
* * *
58109953 TGGCTACT-GGCCATGGTATAGGTATTTTGAGAGGAGCTACCTGGATA
1 TGGCTACTGGGCCATGGTATAGGTATTTCGACAGAAGCTACCTGGATA
* * * * * * *
58110000 TGGCT-CTGGGCCTTGGTATAGGTACTCCGACATAAGTTACCTTGATT
1 TGGCTACTGGGCCATGGTATAGGTATTTCGACAGAAGCTACCTGGATA
58110047 TGGCTA-TGGGCCATGGTATAGGTATTT
1 TGGCTACTGGGCCATGGTATAGGTATTT
58110074 ATCGATTGTG
Statistics
Matches: 59, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
46 2 0.03
47 57 0.97
ACGTcount: A:0.21, C:0.17, G:0.30, T:0.33
Consensus pattern (48 bp):
TGGCTACTGGGCCATGGTATAGGTATTTCGACAGAAGCTACCTGGATA
Found at i:58111306 original size:27 final size:26
Alignment explanation
Indices: 58111265--58111373 Score: 137
Period size: 27 Copynumber: 4.0 Consensus size: 26
58111255 CATGGCTGCT
* *
58111265 AGAACAGATATTGTGACAGAGTCACC
1 AGAACAGATATTGTGGCAGAGCCACC
*
58111291 AGATACAGGTATTGTGGCAGAGCCACC
1 AGA-ACAGATATTGTGGCAGAGCCACC
*
58111318 AGAACAGATATTTGTGGCATAGCCACC
1 AGAACAGATA-TTGTGGCAGAGCCACC
*
58111345 AGAAACAGATATTTGTGGCATAGCCACC
1 AG-AACAGATA-TTGTGGCAGAGCCACC
58111373 A
1 A
58111374 TAACGCTTCC
Statistics
Matches: 75, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
26 9 0.12
27 40 0.53
28 26 0.35
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.20
Consensus pattern (26 bp):
AGAACAGATATTGTGGCAGAGCCACC
Found at i:58111716 original size:47 final size:47
Alignment explanation
Indices: 58111647--58111769 Score: 129
Period size: 47 Copynumber: 2.6 Consensus size: 47
58111637 TGTTGGCCCA
* * * * * *
58111647 ATTTGGCTACATGCCATGGTATAAGTATTTTTAGAGGAGCTACCTTG
1 ATTTGGCTATAGGCCATGGTATAAGTACTCTGAGAGAAGCTACCTTG
* * * * *
58111694 ATTTGGCTATAGGCAATGGTATAGGTACTCTGGGATAAGTTACCTTG
1 ATTTGGCTATAGGCCATGGTATAAGTACTCTGAGAGAAGCTACCTTG
* *
58111741 ATTTAGCTATAGGCCATGGTATAGGTACT
1 ATTTGGCTATAGGCCATGGTATAAGTACT
58111770 TATCGATTGT
Statistics
Matches: 63, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
47 63 1.00
ACGTcount: A:0.26, C:0.14, G:0.25, T:0.35
Consensus pattern (47 bp):
ATTTGGCTATAGGCCATGGTATAAGTACTCTGAGAGAAGCTACCTTG
Found at i:58114055 original size:19 final size:19
Alignment explanation
Indices: 58114019--58114057 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
58114009 TTTTCATCAT
* *
58114019 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
58114038 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
58114057 A
1 A
58114058 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:58114573 original size:27 final size:27
Alignment explanation
Indices: 58114521--58114610 Score: 119
Period size: 27 Copynumber: 3.2 Consensus size: 27
58114511 GTGACAGAGT
58114521 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* *
58114550 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
58114577 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
58114605 CACCAG
1 CACCAG
58114611 GACGCTTCCT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 24 0.44
28 24 0.44
29 7 0.13
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:58114763 original size:28 final size:28
Alignment explanation
Indices: 58114716--58114780 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
58114706 AAATTAACCC
*
58114716 TAGGGGTATAAAGGTCATTTAGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
* *
58114744 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
58114772 TAGGGGTAT
1 TAGGGGTAT
58114781 TCTAGTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.08, G:0.28, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTAGCATACA
Found at i:58115866 original size:12 final size:13
Alignment explanation
Indices: 58115847--58115879 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
58115837 GGGTTCGGCT
58115847 ATGGAGAAGGAAG
1 ATGGAGAAGGAAG
*
58115860 A-GGAGAAGGTAG
1 ATGGAGAAGGAAG
58115872 ATGGAGAA
1 ATGGAGAA
58115880 AAAGAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.09
Consensus pattern (13 bp):
ATGGAGAAGGAAG
Found at i:58118324 original size:40 final size:40
Alignment explanation
Indices: 58118271--58118384 Score: 165
Period size: 40 Copynumber: 2.9 Consensus size: 40
58118261 AAGTTATTTT
* * *
58118271 TGGCACTTTGTGTGTGATACGACATAGCTTCAGCTATATA
1 TGGCACTTAGTGTGCGATTCGACATAGCTTCAGCTATATA
* *
58118311 TGGTACTTAGTGTGCGATTCGACATAGCTTCGGCTATATA
1 TGGCACTTAGTGTGCGATTCGACATAGCTTCAGCTATATA
* *
58118351 TGGCACTTAGTGTGCGATTTGAGATAGCTTCAGC
1 TGGCACTTAGTGTGCGATTCGACATAGCTTCAGC
58118385 CATGTACGAC
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 65 1.00
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGATTCGACATAGCTTCAGCTATATA
Found at i:58142987 original size:28 final size:29
Alignment explanation
Indices: 58142946--58143006 Score: 115
Period size: 28 Copynumber: 2.1 Consensus size: 29
58142936 ATGCTGTAAA
58142946 TGGGCCTAAGACCCATTATTTGGCCTAAG
1 TGGGCCTAAGACCCATTATTTGGCCTAAG
58142975 TGGG-CTAAGACCCATTATTTGGCCTAAG
1 TGGGCCTAAGACCCATTATTTGGCCTAAG
58143003 TGGG
1 TGGG
58143007 ACCACACGCT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 28 0.88
29 4 0.12
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (29 bp):
TGGGCCTAAGACCCATTATTTGGCCTAAG
Found at i:58154704 original size:12 final size:12
Alignment explanation
Indices: 58154687--58154716 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
58154677 AGCCACATGC
58154687 CCGTGTGCTAGG
1 CCGTGTGCTAGG
58154699 CCGTGTGCTAGG
1 CCGTGTGCTAGG
58154711 CCGTGT
1 CCGTGT
58154717 AACAGCCTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.07, C:0.27, G:0.40, T:0.27
Consensus pattern (12 bp):
CCGTGTGCTAGG
Found at i:58158273 original size:7 final size:7
Alignment explanation
Indices: 58158253--58158300 Score: 78
Period size: 7 Copynumber: 6.7 Consensus size: 7
58158243 ATGAAAAATA
58158253 ATATATT
1 ATATATT
58158260 AATATATT
1 -ATATATT
58158268 ATATATT
1 ATATATT
*
58158275 ATATACT
1 ATATATT
58158282 ATATATT
1 ATATATT
58158289 ATATATT
1 ATATATT
58158296 ATATA
1 ATATA
58158301 CTAATTGTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
7 31 0.82
8 7 0.18
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (7 bp):
ATATATT
Found at i:58158311 original size:21 final size:21
Alignment explanation
Indices: 58158261--58158303 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
58158251 TAATATATTA
58158261 ATATATTATATATTATATACT
1 ATATATTATATATTATATACT
58158282 ATATATTATATATTATATACT
1 ATATATTATATATTATATACT
58158303 A
1 A
58158304 ATTGTTATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (21 bp):
ATATATTATATATTATATACT
Found at i:58161194 original size:43 final size:43
Alignment explanation
Indices: 58161147--58161273 Score: 150
Period size: 42 Copynumber: 3.0 Consensus size: 43
58161137 TTCCAAACGT
* *
58161147 GGTCTTACATGTAATCAAATATTGATGCCACTGTCCTAGACAA
1 GGTCTTACACGTAATCAAATATTGATGCCAATGTCCTAGACAA
* *
58161190 GGTCTTACACGAAATCAAATA-TGATGCCAATGTCCTAGACAT
1 GGTCTTACACGTAATCAAATATTGATGCCAATGTCCTAGACAA
* * * *
58161232 TGTCTTACACGTAAATCACAA-ATCGATGCCAACGTCCCAGAC
1 GGTCTTACACGT-AATCA-AATATTGATGCCAATGTCCTAGAC
58161274 GTGGCCTTAC
Statistics
Matches: 72, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
42 29 0.40
43 25 0.35
44 18 0.25
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (43 bp):
GGTCTTACACGTAATCAAATATTGATGCCAATGTCCTAGACAA
Found at i:58164481 original size:42 final size:44
Alignment explanation
Indices: 58164410--58164521 Score: 131
Period size: 42 Copynumber: 2.6 Consensus size: 44
58164400 TGTCACATGT
* * * * *
58164410 AATCAAATATCGATACCACTGTCCTAGACAGGGTCTTACACG-A
1 AATCAAATATCGATGCCAATGTCCCAGACAGGATCTTACAAGTA
*
58164453 AATCAAATA-CGATGCCAATGTCCCAGACATGATCTTACAAGTA
1 AATCAAATATCGATGCCAATGTCCCAGACAGGATCTTACAAGTA
*
58164496 AATCACAA-ATCGATGCCAACGTCCCA
1 AATCA-AATATCGATGCCAATGTCCCA
58164522 AACGTGACCT
Statistics
Matches: 59, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
42 26 0.44
43 16 0.27
44 17 0.29
ACGTcount: A:0.38, C:0.27, G:0.14, T:0.21
Consensus pattern (44 bp):
AATCAAATATCGATGCCAATGTCCCAGACAGGATCTTACAAGTA
Found at i:58165288 original size:32 final size:32
Alignment explanation
Indices: 58165252--58165316 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
58165242 CTAAGCAACG
*
58165252 ATTACAGAAACGTAGAAATTATCAAAAACCGA
1 ATTACAAAAACGTAGAAATTATCAAAAACCGA
58165284 ATTACAAAAACGTAGAAATTATCAAAAACCGA
1 ATTACAAAAACGTAGAAATTATCAAAAACCGA
58165316 A
1 A
58165317 CAAAATACAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.55, C:0.15, G:0.11, T:0.18
Consensus pattern (32 bp):
ATTACAAAAACGTAGAAATTATCAAAAACCGA
Found at i:58165310 original size:17 final size:18
Alignment explanation
Indices: 58165259--58165312 Score: 71
Period size: 18 Copynumber: 3.2 Consensus size: 18
58165249 ACGATTACAG
58165259 AAACGTAGAAATTATCAA
1 AAACGTAGAAATTATCAA
*
58165277 AAAC--CG-AATTA-CAA
1 AAACGTAGAAATTATCAA
58165291 AAACGTAGAAATTATCAA
1 AAACGTAGAAATTATCAA
58165309 AAAC
1 AAAC
58165313 CGAACAAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
14 7 0.23
15 5 0.17
16 2 0.07
17 5 0.17
18 11 0.37
ACGTcount: A:0.57, C:0.15, G:0.09, T:0.19
Consensus pattern (18 bp):
AAACGTAGAAATTATCAA
Found at i:58168013 original size:22 final size:22
Alignment explanation
Indices: 58167988--58168052 Score: 71
Period size: 22 Copynumber: 3.0 Consensus size: 22
58167978 GTAAATACGT
*
58167988 TTGGCACATAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
58168010 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
58168032 TTGG-AGCAAAGCCATAATCAG
1 TTGGCA-CAAAGCCATAATCAG
58168053 AATAATTGGC
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
21 3 0.08
22 31 0.86
23 2 0.06
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:58168256 original size:41 final size:41
Alignment explanation
Indices: 58168199--58168316 Score: 166
Period size: 41 Copynumber: 2.9 Consensus size: 41
58168189 GCCACTGGTA
* * *
58168199 GATCCACAGTCATCAAGCAACCATGCGATCCTTAATC-GATG
1 GATCCACGGTCGTCAAGCAACCATGCGATCCTCAATCAG-TG
*
58168240 GATCCACGGTTGTCAAGCAACCATGCGATCCTCAATCAGTG
1 GATCCACGGTCGTCAAGCAACCATGCGATCCTCAATCAGTG
* *
58168281 GATCCACGGTCGTTAAGCAATCATGCGATCCTCAAT
1 GATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
58168317 TTCTTCCTCC
Statistics
Matches: 69, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
41 68 0.99
42 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (41 bp):
GATCCACGGTCGTCAAGCAACCATGCGATCCTCAATCAGTG
Found at i:58168606 original size:27 final size:26
Alignment explanation
Indices: 58168576--58168871 Score: 173
Period size: 27 Copynumber: 10.9 Consensus size: 26
58168566 GGTAAATCTA
* *
58168576 CAAACCAAGGATATTTCGATAATTTTG
1 CAAATCAAGGGTATTTCG-TAATTTTG
* * *
58168603 CAAACCAATGGTATTTTTTGTAATTTTTG
1 CAAATCAAGGGTA--TTTCGTAA-TTTTG
*
58168632 -AAAGTCAAGTGTATTTCTGTAATTTTG
1 CAAA-TCAAGGGTATTTC-GTAATTTTG
* * * *
58168659 TAAATCAGGGGTATTTTTGTAATTTTC
1 CAAATCAAGGGTA-TTTCGTAATTTTG
* *
58168686 CAAATCAATGGTATTTCGGTAATTTTC
1 CAAATCAAGGGTATTTC-GTAATTTTG
* *
58168713 CAAATCAAGGGTATTTTGGTAATTTTA
1 CAAATCAAGGGTA-TTTCGTAATTTTG
* * *
58168740 AAAATTAAGGGTATTTCGATAATTTTA
1 CAAATCAAGGGTATTTCG-TAATTTTG
* *
58168767 CAAATCGAGGGTATTTCGATAATTTTA
1 CAAATCAAGGGTATTTCG-TAATTTTG
* ** * * *
58168794 TAGGTCGAGCGTATTTCGATAATTTTT
1 CAAATCAAGGGTATTTCG-TAATTTTG
* ** *
58168821 CAAGTCAAGGGTATTTTTTTAATTTTA
1 CAAATCAAGGGTA-TTTCGTAATTTTG
*
58168848 CAAA-CCAGGGATATTTCAGTAATT
1 CAAATCAAGGG-TATTTC-GTAATT
58168872 CTACCCTACA
Statistics
Matches: 216, Mismatches: 40, Indels: 26
0.77 0.14 0.09
Matches are distributed among these distances:
26 15 0.07
27 164 0.76
28 22 0.10
29 15 0.07
ACGTcount: A:0.31, C:0.10, G:0.17, T:0.42
Consensus pattern (26 bp):
CAAATCAAGGGTATTTCGTAATTTTG
Found at i:58168752 original size:81 final size:82
Alignment explanation
Indices: 58168581--58168792 Score: 223
Period size: 81 Copynumber: 2.6 Consensus size: 82
58168571 ATCTACAAAC
* * * ** ** *
58168581 CAAGGATATTTCGATAATTTTGCAAACCAATGGTATTTTTTGTAATTTTTGAAAGTCAAGTGTAT
1 CAAGGGTATTTCGATAATTTTACAAATCAATGGTA-TTTCGGTAATTTTCCAAAGTCAAGGGTAT
**
58168646 TTCTGTAATTTTGTAAAT
65 TTCTGTAATTTTAAAAAT
* * *
58168664 CAGGGGTATTTTTG-TAATTTTCCAAATCAATGGTATTTCGGTAATTTTCCAAA-TCAAGGGTAT
1 CAAGGGTA-TTTCGATAATTTTACAAATCAATGGTATTTCGGTAATTTTCCAAAGTCAAGGGTAT
58168727 TT-TGGTAATTTTAAAAAT
65 TTCT-GTAATTTTAAAAAT
* * * *
58168745 TAAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCGATAATTTT
1 CAAGGGTATTTCGATAATTTTACAAATCAATGGTATTTCGGTAATTTT
58168793 ATAGGTCGAG
Statistics
Matches: 107, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
80 5 0.05
81 59 0.55
82 14 0.13
83 25 0.23
84 4 0.04
ACGTcount: A:0.31, C:0.09, G:0.17, T:0.43
Consensus pattern (82 bp):
CAAGGGTATTTCGATAATTTTACAAATCAATGGTATTTCGGTAATTTTCCAAAGTCAAGGGTATT
TCTGTAATTTTAAAAAT
Found at i:58168808 original size:81 final size:81
Alignment explanation
Indices: 58168581--58168864 Score: 198
Period size: 81 Copynumber: 3.5 Consensus size: 81
58168571 ATCTACAAAC
* * * * * ** *
58168581 CAAGGATATTTCGATAATTTTGCAAACCAATGGTATTTTTTG-TAATTTTTGAAAGTCAAGTGTA
1 CAAGGGTATTTCGATAATTTTACAAATCAAGGGTA--TTTCGATAATTTTACAAA-TCAAGCGTA
**
58168645 TTTCTG-TAATTTTGTAAAT
63 TTTC-GATAATTTTAAAAAT
* * * * * * *
58168664 CAGGGGTATTTTTG-TAATTTTCCAAATCAATGGTATTTCGGTAATTTTCCAAATCAAGGGTATT
1 CAAGGGTA-TTTCGATAATTTTACAAATCAAGGGTATTTCGATAATTTTACAAATCAAGCGTATT
* *
58168728 TTGGTAATTTTAAAAAT
65 TCGATAATTTTAAAAAT
* * * ** *
58168745 TAAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCGATAATTTTATAGGTCGAGCGTATTT
1 CAAGGGTATTTCGATAATTTTACAAATCAAGGGTATTTCGATAATTTTACAAATCAAGCGTATTT
** *
58168810 CGATAATTTTTCAAGT
66 CGATAATTTTAAAAAT
*** *
58168826 CAAGGGTATTTTTTTAATTTTACAAA-CCAGGGATATTTC
1 CAAGGGTATTTCGATAATTTTACAAATCAAGGG-TATTTC
58168865 AGTAATTCTA
Statistics
Matches: 161, Mismatches: 35, Indels: 12
0.77 0.17 0.06
Matches are distributed among these distances:
80 10 0.06
81 112 0.70
82 10 0.06
83 25 0.16
84 4 0.02
ACGTcount: A:0.31, C:0.10, G:0.17, T:0.42
Consensus pattern (81 bp):
CAAGGGTATTTCGATAATTTTACAAATCAAGGGTATTTCGATAATTTTACAAATCAAGCGTATTT
CGATAATTTTAAAAAT
Found at i:58168871 original size:54 final size:54
Alignment explanation
Indices: 58168574--58168864 Score: 257
Period size: 54 Copynumber: 5.4 Consensus size: 54
58168564 ATGGTAAATC
* * * * *
58168574 TACAAACCAAGGATATTTCGATAATTTTGCAAACCAATGGTATTTTTTGTAATTT
1 TACAAATCAAGGGTATTTCGATAATTTTTCAAATCAAGGGTA-TTTTTGTAATTT
** * *
58168629 TTGAAAGTCAAGTGTATTTCTG-TAATTTTGT-AAATCAGGGGTATTTTTGTAATTT
1 TACAAA-TCAAGGGTATTTC-GATAATTTT-TCAAATCAAGGGTATTTTTGTAATTT
* * * * *
58168684 TCCAAATCAATGGTATTTCGGTAATTTTCCAAATCAAGGGTATTTTGGTAATTT
1 TACAAATCAAGGGTATTTCGATAATTTTTCAAATCAAGGGTATTTTTGTAATTT
* * * * *
58168738 TAAAAATTAAGGGTATTTCGATAATTTTACAAATCGAGGGTA-TTTCGATAATTT
1 TACAAATCAAGGGTATTTCGATAATTTTTCAAATCAAGGGTATTTTTG-TAATTT
* ** * * * *
58168792 TATAGGTCGAGCGTATTTCGATAATTTTTCAAGTCAAGGGTATTTTTTTAATTT
1 TACAAATCAAGGGTATTTCGATAATTTTTCAAATCAAGGGTATTTTTGTAATTT
*
58168846 TACAAA-CCAGGGATATTTC
1 TACAAATCAAGGG-TATTTC
58168865 AGTAATTCTA
Statistics
Matches: 188, Mismatches: 40, Indels: 17
0.77 0.16 0.07
Matches are distributed among these distances:
53 9 0.05
54 129 0.69
55 23 0.12
56 26 0.14
57 1 0.01
ACGTcount: A:0.31, C:0.10, G:0.17, T:0.42
Consensus pattern (54 bp):
TACAAATCAAGGGTATTTCGATAATTTTTCAAATCAAGGGTATTTTTGTAATTT
Found at i:58168883 original size:27 final size:27
Alignment explanation
Indices: 58168853--58168982 Score: 116
Period size: 27 Copynumber: 5.1 Consensus size: 27
58168843 TTTTACAAAC
*
58168853 CAGGGATATTTCAGTAATTCTACCCTA
1 CAGGGACATTTCAGTAATTCTACCCTA
*
58168880 CAGGGGCATTTCAGTAATTCTA---T-
1 CAGGGACATTTCAGTAATTCTACCCTA
*
58168903 ----GATATTTCAGTAATTCTACCCTA
1 CAGGGACATTTCAGTAATTCTACCCTA
* *
58168926 CAGGGGCATTTCAGTAATTCTATCCTA
1 CAGGGACATTTCAGTAATTCTACCCTA
* * *
58168953 CA-AGAGCATTTCAGTAATACTAGCCTA
1 CAGGGA-CATTTCAGTAATTCTACCCTA
58168980 CAG
1 CAG
58168983 ATATGAGATT
Statistics
Matches: 82, Mismatches: 11, Indels: 19
0.73 0.10 0.17
Matches are distributed among these distances:
19 16 0.20
22 1 0.01
24 1 0.01
26 1 0.01
27 63 0.77
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (27 bp):
CAGGGACATTTCAGTAATTCTACCCTA
Found at i:58168924 original size:46 final size:46
Alignment explanation
Indices: 58168857--58168948 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
58168847 ACAAACCAGG
58168857 GATATTTCAGTAATTCTACCCTACAGGGGCATTTCAGTAATTCTAT
1 GATATTTCAGTAATTCTACCCTACAGGGGCATTTCAGTAATTCTAT
58168903 GATATTTCAGTAATTCTACCCTACAGGGGCATTTCAGTAATTCTAT
1 GATATTTCAGTAATTCTACCCTACAGGGGCATTTCAGTAATTCTAT
58168949 CCTACAAGAG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.37
Consensus pattern (46 bp):
GATATTTCAGTAATTCTACCCTACAGGGGCATTTCAGTAATTCTAT
Found at i:58172019 original size:41 final size:41
Alignment explanation
Indices: 58171959--58172079 Score: 179
Period size: 41 Copynumber: 3.0 Consensus size: 41
58171949 AAAGCCACTA
*
58171959 GTGGATCCACGGTCGTCAAGCAACCATGCGATCCTTAATCG
1 GTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATCG
* * *
58172000 GTGGATCCACGATCATCAAGCAACCATGCGAGCCTCAATCG
1 GTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATCG
* * *
58172041 GTGGATCTACGGTCGTCAAGAAACCATGCAATCCTCAAT
1 GTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
58172080 TTCTTCCTCC
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 70 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (41 bp):
GTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATCG
Found at i:58172369 original size:27 final size:27
Alignment explanation
Indices: 58172317--58172633 Score: 305
Period size: 27 Copynumber: 11.7 Consensus size: 27
58172307 TTTCACCCTA
* * * * *
58172317 CAAGGGTGTATTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
58172344 CAAGGGTATTTTGGTAATTTTGCAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * **
58172371 CAATGGTATTTTTGTAATTTTTGAAAGT
1 CAAGGGTATTTTGGTAATTTTACAAA-T
* **
58172399 CAAGGGTATTTCT-ATAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTACAAAT
* *
58172426 CAGGGGTATTTCT-GTAATTTTCCAAAT
1 CAAGGGTATTT-TGGTAATTTTACAAAT
* *** *
58172453 CAATGGTATTTCAATAATTTTCCAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
58172480 CAAGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
58172507 CAAGGGTATTTCGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
58172534 CGAGGGTATTTTTGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* **
58172561 CAAGGGTATTTCGGTAATTTTACAGGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * * *
58172588 CGAGGGTATTTCGGTAATTTTTCAAGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
58172615 TAAGGGTATTTTAGTAATT
1 CAAGGGTATTTTGGTAATT
58172634 CTACCCTACA
Statistics
Matches: 244, Mismatches: 43, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
27 222 0.91
28 21 0.09
29 1 0.00
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:58172518 original size:81 final size:81
Alignment explanation
Indices: 58172317--58172633 Score: 339
Period size: 81 Copynumber: 3.9 Consensus size: 81
58172307 TTTCACCCTA
* * * * * * *
58172317 CAAGGGTGTATTGGTAAATCTACAAACCAAGGGTATTTTGGTAATTTTGCAAATCAATGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAATCAATGGTATTT
**
58172382 TTGTAATTTTTGAAAGT
66 TTGTAATTTTACAAA-T
* ** * * *
58172399 CAAGGGTATTTCT-ATAATTTTGTAAATCAGGGGTATTTCTGTAATTTTCCAAATCAATGGTATT
1 CAAGGGTATTT-TGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAATCAATGGTATT
*** *
58172463 TCAATAATTTTCCAAAT
65 TTTGTAATTTTACAAAT
* *
58172480 CAAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAATCAATGGTATTT
58172545 TTGTAATTTTACAAAT
66 TTGTAATTTTACAAAT
* ** * * * * *
58172561 CAAGGGTATTTCGGTAATTTTACAGGTCGAGGGTATTTCGGTAATTTTTCAAGTTAAGGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAATCAATGGTATTT
*
58172626 TAGTAATT
66 TTGTAATT
58172634 CTACCCTACA
Statistics
Matches: 195, Mismatches: 38, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
80 1 0.01
81 132 0.68
82 61 0.31
83 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (81 bp):
CAAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAATCAATGGTATTT
TTGTAATTTTACAAAT
Found at i:58172652 original size:27 final size:27
Alignment explanation
Indices: 58172616--58172698 Score: 96
Period size: 27 Copynumber: 3.1 Consensus size: 27
58172606 TTTTCAAGTT
*
58172616 AAGGGTATTTTAGTAATTCTACCCTAC
1 AAGGGCATTTTAGTAATTCTACCCTAC
*
58172643 -AGAGGCATTTTAGTAATTCTATCCTAC
1 AAG-GGCATTTTAGTAATTCTACCCTAC
* * * *
58172670 AAGGGCATTTCAGTACTGCTAGCCTAC
1 AAGGGCATTTTAGTAATTCTACCCTAC
58172697 AA
1 AA
58172699 ATATGAGATT
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
26 2 0.04
27 44 0.92
28 2 0.04
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (27 bp):
AAGGGCATTTTAGTAATTCTACCCTAC
Found at i:58175085 original size:43 final size:43
Alignment explanation
Indices: 58174929--58175085 Score: 169
Period size: 43 Copynumber: 3.7 Consensus size: 43
58174919 TGTGTTTTTG
*
58174929 TGTAAGACCACGTCTGGGACGTTGGCATCGACT-TATGATTTACA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGA-TATTTGA-TTACA
** * * *
58174973 TGTAAGATGATGTCTGGGACGTTGGCATCG-TACTTGATTTCA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTACA
* *
58175015 TGTAAGACC-CTGTCTGGGTCAG-AGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATTTGATTACA
*
58175058 TGTAAGACCACGTCTGGGACGTCGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
58175086 TGTATGAGCT
Statistics
Matches: 92, Mismatches: 15, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
42 28 0.30
43 36 0.39
44 28 0.30
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTACA
Found at i:58178549 original size:47 final size:47
Alignment explanation
Indices: 58178480--58178573 Score: 188
Period size: 47 Copynumber: 2.0 Consensus size: 47
58178470 CCAGAATTAC
58178480 CTCCGATCCGAGAAGTTGAATTTTGTGTTGAGTTAGTACCGGAAACT
1 CTCCGATCCGAGAAGTTGAATTTTGTGTTGAGTTAGTACCGGAAACT
58178527 CTCCGATCCGAGAAGTTGAATTTTGTGTTGAGTTAGTACCGGAAACT
1 CTCCGATCCGAGAAGTTGAATTTTGTGTTGAGTTAGTACCGGAAACT
58178574 ACTCTGATTT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (47 bp):
CTCCGATCCGAGAAGTTGAATTTTGTGTTGAGTTAGTACCGGAAACT
Found at i:58184857 original size:41 final size:42
Alignment explanation
Indices: 58184780--58184866 Score: 124
Period size: 41 Copynumber: 2.1 Consensus size: 42
58184770 ATCGGGCCGT
*
58184780 TCAACAAGCTCGGATGCCATATATATCACGAACTTGGACCAC
1 TCAACAAGCTCGGATGCCATATATATCACAAACTTGGACCAC
* *
58184822 TCAACAAGTTCGGAT-CC-TCTCATATCACAAACTTGGACCAC
1 TCAACAAGCTCGGATGCCATAT-ATATCACAAACTTGGACCAC
58184863 TCAA
1 TCAA
58184867 TGAGCTCGAA
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
40 2 0.05
41 25 0.61
42 14 0.34
ACGTcount: A:0.33, C:0.30, G:0.14, T:0.23
Consensus pattern (42 bp):
TCAACAAGCTCGGATGCCATATATATCACAAACTTGGACCAC
Found at i:58187577 original size:46 final size:47
Alignment explanation
Indices: 58187490--58187592 Score: 129
Period size: 46 Copynumber: 2.2 Consensus size: 47
58187480 TACATGAATT
*
58187490 ATTCCTGTCTCCAATGCCATATATATATAATATGTGCTTACGTGGCTC
1 ATTCCTGTCTCCAAAGCCA-ATATATATAATATGTGCTTACGTGGCTC
* * *
58187538 ATTCTTGTCTCCAAAGCC-ATATATCTGATATG-GACTTACGTGGCTC
1 ATTCCTGTCTCCAAAGCCAATATATATAATATGTG-CTTACGTGGCTC
*
58187584 ATTTCTGTC
1 ATTCCTGTC
58187593 CTGTCCTGTC
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
45 1 0.02
46 31 0.65
48 16 0.33
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (47 bp):
ATTCCTGTCTCCAAAGCCAATATATATAATATGTGCTTACGTGGCTC
Found at i:58192629 original size:46 final size:48
Alignment explanation
Indices: 58192547--58192666 Score: 111
Period size: 48 Copynumber: 2.5 Consensus size: 48
58192537 GACAGGACAG
* * * *
58192547 GACAGAAATGAGCCATGTAAGTCCATA-T-CAGTTATATCGCTTTGGA
1 GACAGGAATGATCCATGTAAGCCCATATTACAGTTATATCGCATTGGA
* * *
58192593 GACAGGAATGATCCATGTAAGCCCGTATTATA-TATATATGGCATTGGA
1 GACAGGAATGATCCATGTAAGCCCATATTACAGT-TATATCGCATTGGA
* * * *
58192641 GACAAGAATAATTCATGTAAGTCCAT
1 GACAGGAATGATCCATGTAAGCCCAT
58192667 GTCGAAGACA
Statistics
Matches: 59, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
46 23 0.39
47 2 0.03
48 34 0.58
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.28
Consensus pattern (48 bp):
GACAGGAATGATCCATGTAAGCCCATATTACAGTTATATCGCATTGGA
Found at i:58196158 original size:30 final size:31
Alignment explanation
Indices: 58196124--58196218 Score: 97
Period size: 30 Copynumber: 3.2 Consensus size: 31
58196114 CTCACTCCTG
*
58196124 GCTC-ACTTTCAACTCACGAGCTAAACCTTA
1 GCTCAACTTTCAGCTCACGAGCTAAACCTTA
* * * * * *
58196154 GCTCAAC-TTCAGCTTAGGAGTTTAGCCTCA
1 GCTCAACTTTCAGCTCACGAGCTAAACCTTA
*
58196184 GCTCAACTTT-AGCTCACGAGCTAAAGCTTA
1 GCTCAACTTTCAGCTCACGAGCTAAACCTTA
58196214 GCTCA
1 GCTCA
58196219 TTTTAGTTTA
Statistics
Matches: 49, Mismatches: 14, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
30 45 0.92
31 4 0.08
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (31 bp):
GCTCAACTTTCAGCTCACGAGCTAAACCTTA
Found at i:58204884 original size:95 final size:96
Alignment explanation
Indices: 58204716--58205039 Score: 323
Period size: 96 Copynumber: 3.4 Consensus size: 96
58204706 TGATATGTGT
* * * * *
58204716 GCCAGTGTAAGACCATGTCTGGGACATGGCGTCGACCA-CGGCATGAGAGCCAGTGTAAGACCAT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCG-GCATTGACATGAGAGCTAGTGTAAGACCAT
* * *****
58204780 GTTTGGAACATGACATTAG-CGATGTTGTGAGA
65 GTCTGGAACATGACA-TAGACCACAACATGAGA
* * *
58204812 GCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCATTGATATGTG-GCTAGTGTAAGACCATG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGACATGAGAGCTAGTGTAAGACCATG
* *
58204876 TCTGGAACATGGCATCGACCACAACATGAGA
66 TCTGGAACATGACATAGACCACAACATGAGA
* * * * *
58204907 GCCAATGTAAGACCATGTCTGGCATATGGCATCGGCATTGAGACGAGAGCTAGTGTAAGACCATG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGACATGAGAGCTAGTGTAAGACCATG
* * * * *
58204972 TCTGGGACATGGCATCGGCCTCAACATGTA-A
66 TCTGGAACATGACATAGACCACAACATG-AGA
* * *
58205003 GCCAGTGTAAGACCATGTTTGGAACATGTCATCGGCA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
58205040 ATTCACCTTT
Statistics
Matches: 192, Mismatches: 32, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
94 2 0.01
95 77 0.40
96 112 0.58
97 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.23
Consensus pattern (96 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGACATGAGAGCTAGTGTAAGACCATG
TCTGGAACATGACATAGACCACAACATGAGA
Found at i:58204977 original size:143 final size:143
Alignment explanation
Indices: 58204706--58205036 Score: 405
Period size: 143 Copynumber: 2.3 Consensus size: 143
58204696 GACATTTGGG
* * ** *
58204706 TGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCGTCGACCACGGCATGAGAGCCAGTG
1 TGATATGTG-GCCAGTGTAAGACCATGTCTGGAACATGGCATCGACCACAACATGAGAGCCAATG
* * * *
58204771 TAAGACCATGTTTGGAACATGACATTAGCGATGTTGTGAGAGCCAGTGTAAGACCATGTCTGGGA
65 TAAGACCATGTCTGGAACATGACATCAGCGATGTAGCGAGAGCCAGTGTAAGACCATGTCTGGGA
*
58204836 CATGGCATTGGCAT
130 CATGGCATCGGCAT
*
58204850 TGATATGTGGCTAGTGTAAGACCATGTCTGGAACATGGCATCGACCACAACATGAGAGCCAATGT
1 TGATATGTGGCCAGTGTAAGACCATGTCTGGAACATGGCATCGACCACAACATGAGAGCCAATGT
* * * * *
58204915 AAGACCATGTCTGGCATATGGCATCGGC-AT-TGAGACGAGAGCTAGTGTAAGACCATGTCTGGG
66 AAGACCATGTCTGGAACATGACATCAGCGATGT-AG-CGAGAGCCAGTGTAAGACCATGTCTGGG
*
58204978 ACATGGCATCGGCCT
129 ACATGGCATCGGCAT
** * * * *
58204993 CAACATGTAAGCCAGTGTAAGACCATGTTTGGAACATGTCATCG
1 TGATATGT-GGCCAGTGTAAGACCATGTCTGGAACATGGCATCG
58205037 GCAATTCACC
Statistics
Matches: 160, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
141 1 0.01
142 3 0.02
143 116 0.73
144 40 0.25
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (143 bp):
TGATATGTGGCCAGTGTAAGACCATGTCTGGAACATGGCATCGACCACAACATGAGAGCCAATGT
AAGACCATGTCTGGAACATGACATCAGCGATGTAGCGAGAGCCAGTGTAAGACCATGTCTGGGAC
ATGGCATCGGCAT
Found at i:58205006 original size:96 final size:95
Alignment explanation
Indices: 58204807--58205039 Score: 324
Period size: 96 Copynumber: 2.4 Consensus size: 95
58204797 AGCGATGTTG
* * * * *
58204807 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCATTGATATGTGGCTAGTGTAAGAC
1 TGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGAGACGAGGCTAGTGTAAGAC
58204872 CATGTCTGGAACATGGCATCGACCACAACA
66 CATGTCTGGAACATGGCATCGACCACAACA
* * *
58204902 TGAGAGCCAATGTAAGACCATGTCTGGCATATGGCATCGGCATTGAGACGAGAGCTAGTGTAAGA
1 TGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGAGACGAG-GCTAGTGTAAGA
* * *
58204967 CCATGTCTGGGACATGGCATCGGCCTCAACA
65 CCATGTCTGGAACATGGCATCGACCACAACA
* *
58204998 TGTA-AGCCAGTGTAAGACCATGTTTGGAACATGTCATCGGCA
1 TG-AGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCA
58205040 ATTCACCTTT
Statistics
Matches: 121, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
95 45 0.37
96 75 0.62
97 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (95 bp):
TGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGAGACGAGGCTAGTGTAAGAC
CATGTCTGGAACATGGCATCGACCACAACA
Found at i:58205037 original size:48 final size:48
Alignment explanation
Indices: 58204716--58205038 Score: 274
Period size: 48 Copynumber: 6.8 Consensus size: 48
58204706 TGATATGTGT
* * * * **
58204716 GCCAGTGTAAGACCATGTCTGGGACATGGCGTCGACCACGGCATGAGA
1 GCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCAACATGAGA
* * ** * ****
58204764 GCCAGTGTAAGACCATGTTTGGAACATGACATTAGCGAT-GTTGTGAGA
1 GCCAGTGTAAGACCATGTCTGGAACATGGCATCGGC-CTCAACATGAGA
* * * ** * *
58204812 GCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCATTGATATGTG-
1 GCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCAACATGAGA
* * *
58204859 GCTAGTGTAAGACCATGTCTGGAACATGGCATCGACCACAACATGAGA
1 GCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCAACATGAGA
* * * * ** * *
58204907 GCCAATGTAAGACCATGTCTGGCATATGGCATCGGCATTGAGACGAGA
1 GCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCAACATGAGA
* *
58204955 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAACATGTA-A
1 GCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCAACATG-AGA
* *
58205003 GCCAGTGTAAGACCATGTTTGGAACATGTCATCGGC
1 GCCAGTGTAAGACCATGTCTGGAACATGGCATCGGC
58205039 AATTCACCTT
Statistics
Matches: 218, Mismatches: 53, Indels: 8
0.78 0.19 0.03
Matches are distributed among these distances:
47 39 0.18
48 178 0.82
49 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.23
Consensus pattern (48 bp):
GCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCAACATGAGA
Found at i:58208404 original size:57 final size:57
Alignment explanation
Indices: 58208307--58208422 Score: 187
Period size: 57 Copynumber: 2.0 Consensus size: 57
58208297 ATTTCCATGA
* *
58208307 TAAGCAAGTTGATAAATTGCTTATTATTTTCATACGGTCTTACTAAGATATAAATCT
1 TAAGCAAGTTGATAAATTGCTTATTATTTCCATACGGTCTTACTAAGATATAAAGCT
* * *
58208364 TAAGTAAGTTGATAAATTGCTTATTATTTCCATACTGTCTTACTAAGCTATAAAGCT
1 TAAGCAAGTTGATAAATTGCTTATTATTTCCATACGGTCTTACTAAGATATAAAGCT
58208421 TA
1 TA
58208423 CTCCATTCCT
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
57 54 1.00
ACGTcount: A:0.34, C:0.13, G:0.12, T:0.41
Consensus pattern (57 bp):
TAAGCAAGTTGATAAATTGCTTATTATTTCCATACGGTCTTACTAAGATATAAAGCT
Found at i:58210745 original size:50 final size:50
Alignment explanation
Indices: 58210691--58210852 Score: 288
Period size: 50 Copynumber: 3.2 Consensus size: 50
58210681 CACTCATTTT
* *
58210691 GCCGAATACACAAGATCAAATATAACATCACATATGTACATACCTATATG
1 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATGTG
* *
58210741 GCCGAATATACAAGATCAAACATAACATCACATATGTCCATACCTATGTG
1 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATGTG
58210791 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATGTG
1 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATGTG
58210841 GCCGAATATACA
1 GCCGAATATACA
58210853 TGGTCATTTA
Statistics
Matches: 106, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
50 106 1.00
ACGTcount: A:0.42, C:0.22, G:0.12, T:0.24
Consensus pattern (50 bp):
GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATGTG
Found at i:58217700 original size:50 final size:50
Alignment explanation
Indices: 58217646--58217790 Score: 218
Period size: 50 Copynumber: 2.9 Consensus size: 50
58217636 CCGAATACAT
*
58217646 AAGATCAAATATAACATCACATATGTACATACCTATATGGCCGAACATAC
1 AAGATCAAACATAACATCACATATGTACATACCTATATGGCCGAACATAC
* * ** *
58217696 AAGATCAAACATAATATCACATATGTACATACCTATGTGGTTGAATATAC
1 AAGATCAAACATAACATCACATATGTACATACCTATATGGCCGAACATAC
* *
58217746 AAGATCAAAGATAACATCACATATGTACATACATATATGGCCGAA
1 AAGATCAAACATAACATCACATATGTACATACCTATATGGCCGAA
58217791 TGTACATGGT
Statistics
Matches: 83, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
50 83 1.00
ACGTcount: A:0.44, C:0.19, G:0.12, T:0.26
Consensus pattern (50 bp):
AAGATCAAACATAACATCACATATGTACATACCTATATGGCCGAACATAC
Found at i:58224271 original size:18 final size:18
Alignment explanation
Indices: 58224248--58224285 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
58224238 TTTTCATTTT
58224248 ATATATTAAA-ATTAAAAA
1 ATATATTAAATA-TAAAAA
58224266 ATATATTAAATATAAAAA
1 ATATATTAAATATAAAAA
58224284 AT
1 AT
58224286 GTGATTCTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 18 0.95
19 1 0.05
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (18 bp):
ATATATTAAATATAAAAA
Found at i:58225273 original size:29 final size:29
Alignment explanation
Indices: 58225220--58225298 Score: 77
Period size: 31 Copynumber: 2.6 Consensus size: 29
58225210 AAAATTATAA
**
58225220 ATAAATTTTAATTTAATGTGTAATTACATAC
1 ATAAATTTTAATTT-A-GTACAATTACATAC
* *
58225251 ATAAATTTTAATTTAGTACAATTATATAT
1 ATAAATTTTAATTTAGTACAATTACATAC
*
58225280 ATGAAATTCTAATTATAGT
1 AT-AAATTTTAATT-TAGT
58225299 TCAAATGTAT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
29 12 0.29
30 11 0.27
31 18 0.44
ACGTcount: A:0.43, C:0.05, G:0.06, T:0.46
Consensus pattern (29 bp):
ATAAATTTTAATTTAGTACAATTACATAC
Found at i:58225543 original size:31 final size:29
Alignment explanation
Indices: 58225476--58225545 Score: 88
Period size: 29 Copynumber: 2.3 Consensus size: 29
58225466 AAATCAAAAT
**
58225476 TTCATGTATACAATTGCACAAAATTAAAG
1 TTCATGTATACAATTGCACAAAACCAAAG
58225505 TTCATGTATACAATTGCACATTAAACCATAA-
1 TTCATGTATACAATTGCACA--AAACCA-AAG
58225536 TTCATGTATA
1 TTCATGTATA
58225546 GTTTTGAGAA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
29 20 0.56
31 14 0.39
32 2 0.06
ACGTcount: A:0.41, C:0.16, G:0.09, T:0.34
Consensus pattern (29 bp):
TTCATGTATACAATTGCACAAAACCAAAG
Found at i:58226088 original size:25 final size:25
Alignment explanation
Indices: 58226060--58226107 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
58226050 TTGTTTCAAT
*
58226060 TTTTTTCT-TTATTTTCATTTTTTTC
1 TTTTGTCTCTTATTTT-ATTTTTTTC
*
58226085 TTTTGTCTCTTCTTTTATTTTTT
1 TTTTGTCTCTTATTTTATTTTTT
58226108 AATTATTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 14 0.70
26 6 0.30
ACGTcount: A:0.06, C:0.12, G:0.02, T:0.79
Consensus pattern (25 bp):
TTTTGTCTCTTATTTTATTTTTTTC
Found at i:58233163 original size:14 final size:14
Alignment explanation
Indices: 58233144--58233178 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
58233134 TATAAGAGTT
58233144 AACTCATGACACGC
1 AACTCATGACACGC
58233158 AACTCATGACACGC
1 AACTCATGACACGC
58233172 AACTCAT
1 AACTCAT
58233179 CTTAGATCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.37, C:0.34, G:0.11, T:0.17
Consensus pattern (14 bp):
AACTCATGACACGC
Found at i:58241190 original size:25 final size:26
Alignment explanation
Indices: 58241140--58241190 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
58241130 TATAAAATAT
* *
58241140 TAGTATAAAATAATTTTTTTGAATAAA
1 TAGTATAAAATAA-TCTTTTAAATAAA
58241167 TAGTATAAAATAA-CTTTTAAATAA
1 TAGTATAAAATAATCTTTTAAATAA
58241191 TGAACAAACT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 9 0.41
27 13 0.59
ACGTcount: A:0.51, C:0.02, G:0.06, T:0.41
Consensus pattern (26 bp):
TAGTATAAAATAATCTTTTAAATAAA
Found at i:58241920 original size:20 final size:22
Alignment explanation
Indices: 58241892--58241941 Score: 63
Period size: 20 Copynumber: 2.5 Consensus size: 22
58241882 TTAATAATAT
*
58241892 AATAGAAAATTATAT-TT-TAA
1 AATATAAAATTATATGTTATAA
58241912 AATATAAAA-TATATGTTATAA
1 AATATAAAATTATATGTTATAA
58241933 AAT-TAAAAT
1 AATATAAAAT
58241942 ACTATTATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 15 0.58
21 6 0.23
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (22 bp):
AATATAAAATTATATGTTATAA
Found at i:58241942 original size:20 final size:19
Alignment explanation
Indices: 58241892--58241947 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 19
58241882 TTAATAATAT
*
58241892 AATAGAAAATTATATTTTAA
1 AATATAAAA-TATATTTTAA
58241912 AATATAAAATATATGTTATAA
1 AATATAAAATATAT-TT-TAA
58241933 AAT-TAAAATACTATT
1 AATATAAAATA-TATT
58241948 ATTTCATAAG
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
19 5 0.16
20 18 0.56
21 9 0.28
ACGTcount: A:0.55, C:0.02, G:0.04, T:0.39
Consensus pattern (19 bp):
AATATAAAATATATTTTAA
Found at i:58243601 original size:18 final size:18
Alignment explanation
Indices: 58243580--58243637 Score: 68
Period size: 18 Copynumber: 3.3 Consensus size: 18
58243570 TATATACTTA
58243580 CTTACTAAGCTATATAAG
1 CTTACTAAGCTATATAAG
* *
58243598 CTTACTTA--TATACTTA-
1 CTTACTAAGCTATA-TAAG
58243614 CTTACTAAGCTATATAAG
1 CTTACTAAGCTATATAAG
58243632 CTTACT
1 CTTACT
58243638 TTCTTTTCTC
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
16 11 0.34
17 4 0.12
18 17 0.53
ACGTcount: A:0.34, C:0.19, G:0.07, T:0.40
Consensus pattern (18 bp):
CTTACTAAGCTATATAAG
Found at i:58243612 original size:34 final size:34
Alignment explanation
Indices: 58243569--58243638 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
58243559 TTGTTATTAT
58243569 TTATATACTTACTTACTAAGCTATATAAGCTTAC
1 TTATATACTTACTTACTAAGCTATATAAGCTTAC
58243603 TTATATACTTACTTACTAAGCTATATAAGCTTAC
1 TTATATACTTACTTACTAAGCTATATAAGCTTAC
58243637 TT
1 TT
58243639 TCTTTTCTCT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.34, C:0.17, G:0.06, T:0.43
Consensus pattern (34 bp):
TTATATACTTACTTACTAAGCTATATAAGCTTAC
Found at i:58254901 original size:39 final size:40
Alignment explanation
Indices: 58254840--58255058 Score: 214
Period size: 40 Copynumber: 5.5 Consensus size: 40
58254830 AAGCCAAGTA
* * * *
58254840 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCTCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCACACAAATG
*
58254878 CCTTCGGGACATAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
* * * *
58254918 CCTTTGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
* * * *
58254958 CCTTCGGGACTTAGCCCGAAATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCG-GATATAGTAACTCACACAAATG
* * *
58254999 CCTTCGGGACTTAGCCCAGA-ACTAGTCACT-AGCGCAAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCA-CAC-AAATG
58255040 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
58255059 TTATCATCCA
Statistics
Matches: 154, Mismatches: 20, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
38 12 0.08
39 16 0.10
40 65 0.42
41 61 0.40
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
Found at i:58254994 original size:41 final size:40
Alignment explanation
Indices: 58254874--58255057 Score: 228
Period size: 40 Copynumber: 4.5 Consensus size: 40
58254864 CTACTCTCTC
* * * * *
58254874 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCACACA
1 AATGCCTTCGGGACTTAGCCCGAATGTAATAACTCGCACA
* *
58254914 AATGCCTTTGGGACTTAGCCCGGATGTAATAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGAATGTAATAACTCGCACA
58254954 AATGCCTTCGGGACTTAGCCCGAAATGTAATAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCG-AATGTAATAACTCGCACA
* * *
58254995 AATGCCTTCGGGACTTAGCCCAGAA-CTAGTCACTAGCGCA-A
1 AATGCCTTCGGGACTTAGCCC-GAATGTAATAACT--CGCACA
58255036 AATGCCTTCGGGACTTAGCCCG
1 AATGCCTTCGGGACTTAGCCCG
58255058 GTTATCATCC
Statistics
Matches: 130, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
40 63 0.48
41 62 0.48
42 5 0.04
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGAATGTAATAACTCGCACA
Found at i:58255008 original size:81 final size:80
Alignment explanation
Indices: 58254874--58255057 Score: 235
Period size: 81 Copynumber: 2.3 Consensus size: 80
58254864 CTACTCTCTC
* * * * * *
58254874 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCACACAAATGCCTTTGGGACTTAGCCCGGAT
1 AATGCCTTCGGGACTTAGCCCGAATATAATAACTCACACAAATGCCTTCGGGACTTAGCCCAGAA
*
58254939 GTAATAACT-CGCACA
66 CTAATAACTACGCA-A
* *
58254954 AATGCCTTCGGGACTTAGCCCGAAATGTAATAACTCGCACAAATGCCTTCGGGACTTAGCCCAGA
1 AATGCCTTCGGGACTTAGCCCG-AATATAATAACTCACACAAATGCCTTCGGGACTTAGCCCAGA
* *
58255019 ACTAGTCACTAGCGCAA
65 ACTAATAACTA-CGCAA
58255036 AATGCCTTCGGGACTTAGCCCG
1 AATGCCTTCGGGACTTAGCCCG
58255058 GTTATCATCC
Statistics
Matches: 90, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
80 21 0.23
81 42 0.47
82 23 0.26
83 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGAATATAATAACTCACACAAATGCCTTCGGGACTTAGCCCAGAA
CTAATAACTACGCAA
Found at i:58265368 original size:25 final size:28
Alignment explanation
Indices: 58265340--58265393 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 28
58265330 ATGTGAATGT
*
58265340 TGTG-ATGGTTTG-ATA-TCAATGGATG
1 TGTGAATGGTATGTATATTCAATGGATG
58265365 TGTGATATGGTATGTATATTCAATGGATG
1 TGTGA-ATGGTATGTATATTCAATGGATG
58265394 AACTTTGATC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 4 0.17
27 7 0.29
28 3 0.12
29 10 0.42
ACGTcount: A:0.26, C:0.04, G:0.30, T:0.41
Consensus pattern (28 bp):
TGTGAATGGTATGTATATTCAATGGATG
Found at i:58275425 original size:40 final size:40
Alignment explanation
Indices: 58275346--58275522 Score: 207
Period size: 40 Copynumber: 4.5 Consensus size: 40
58275336 CGGATGATAA
* * * *
58275346 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * * * *
58275386 CTGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
* *
58275426 CCAGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
58275466 CCGGGCTAGGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
58275506 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
58275523 ATACTTGGGT
Statistics
Matches: 114, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
38 1 0.01
39 14 0.12
40 97 0.85
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:58275484 original size:80 final size:79
Alignment explanation
Indices: 58275346--58275522 Score: 241
Period size: 80 Copynumber: 2.2 Consensus size: 79
58275336 CGGATGATAA
* * * *
58275346 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATCTGGGCTATGTCCCGAAGGCATTTA
1 CCGG-CTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAGGACCCGAAGGCATTTA
*
58275411 TGCTAG-TGATTATAT
65 TGCGAGTTG-TTATAT
* *
58275426 CCAGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAGGACCCGAAGGCATTTG
1 CC-GGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAGGACCCGAAGGCATTTA
58275491 TGCGAGTTGTTATAT
65 TGCGAGTTGTTATAT
58275506 CCGGCTAA-ATCCCGAAG
1 CCGGCTAAGA-CCCGAAG
58275523 ATACTTGGGT
Statistics
Matches: 87, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
78 1 0.01
79 13 0.15
80 69 0.79
81 4 0.05
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (79 bp):
CCGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAGGACCCGAAGGCATTTAT
GCGAGTTGTTATAT
Found at i:58275790 original size:22 final size:22
Alignment explanation
Indices: 58275750--58275791 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
58275740 GAATGTGCAT
*
58275750 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
58275772 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
58275792 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:58283556 original size:29 final size:27
Alignment explanation
Indices: 58283538--58283607 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
58283528 ATATTAAGTC
58283538 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
58283565 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
58283593 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
58283608 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:58283601 original size:28 final size:28
Alignment explanation
Indices: 58283538--58283635 Score: 126
Period size: 28 Copynumber: 3.5 Consensus size: 28
58283528 ATATTAAGTC
*
58283538 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
58283565 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * * *
58283593 CGCACACTTAGTGCTGTACAATTTAGACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
58283622 CGCACACTTAGTGC
1 CGCACACTTAGTGC
58283636 CAATCTCATG
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 22 0.35
28 23 0.37
29 18 0.29
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:58289527 original size:28 final size:27
Alignment explanation
Indices: 58289483--58289584 Score: 125
Period size: 28 Copynumber: 3.7 Consensus size: 27
58289473 GGCCCCTTTA
* *
58289483 GGCCTAATCTCATTCATATGGCCCATC
1 GGCCCAATCACATTCATATGGCCCATC
*
58289510 GGTCCCAATCACATTCATATGGCCCATTA
1 GG-CCCAATCACATTCATATGGCCCA-TC
*
58289539 GGCCCAATCAC-TTCCATATGGCCCGTC
1 GGCCCAATCACATT-CATATGGCCCATC
58289566 AGGCCCAATCACATTCATA
1 -GGCCCAATCACATTCATA
58289585 GTCATGCAAT
Statistics
Matches: 65, Mismatches: 5, Indels: 9
0.82 0.06 0.11
Matches are distributed among these distances:
27 5 0.08
28 55 0.85
29 5 0.08
ACGTcount: A:0.25, C:0.34, G:0.15, T:0.25
Consensus pattern (27 bp):
GGCCCAATCACATTCATATGGCCCATC
Found at i:58289811 original size:8 final size:8
Alignment explanation
Indices: 58289798--58289840 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
58289788 GTAGCCAAAC
*
58289798 TTTCGGCT
1 TTTCGGCA
58289806 TTTCGGCA
1 TTTCGGCA
*
58289814 TTTCGGCT
1 TTTCGGCA
*
58289822 TTTCAGCA
1 TTTCGGCA
*
58289830 TTTCGGGA
1 TTTCGGCA
58289838 TTT
1 TTT
58289841 ACCGATCTAC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.09, C:0.21, G:0.23, T:0.47
Consensus pattern (8 bp):
TTTCGGCA
Found at i:58289819 original size:16 final size:16
Alignment explanation
Indices: 58289798--58289835 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
58289788 GTAGCCAAAC
*
58289798 TTTCGGCTTTTCGGCA
1 TTTCGGCTTTTCAGCA
58289814 TTTCGGCTTTTCAGCA
1 TTTCGGCTTTTCAGCA
58289830 TTTCGG
1 TTTCGG
58289836 GATTTACCGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.08, C:0.24, G:0.24, T:0.45
Consensus pattern (16 bp):
TTTCGGCTTTTCAGCA
Found at i:58294336 original size:71 final size:69
Alignment explanation
Indices: 58294187--58294366 Score: 209
Period size: 71 Copynumber: 2.6 Consensus size: 69
58294177 TTTTGGAAAG
* * *
58294187 CACATTAAGCATTTAAAATGGACTTAAATGAACACATTTTCAAGACAACAAATCAACCCTTTACA
1 CACATTAAGCATTTAAAATGAACGTAAATGAACACATTTTCAAGACAACAAATCAACACTTTACA
*
58294252 GCAG
66 GCAA
* * * * * * * *
58294256 CACATTAAGCATCTAAAATTAACGTGAGTGAACACATTTTTTTAAGATAACAAATTAGCACTTTA
1 CACATTAAGCATTTAAAATGAACGTAAATGAACACA--TTTTCAAGACAACAAATCAACACTTTA
58294321 CAGCAA
64 CAGCAA
*
58294327 CACATTAAGCATTT-AAATCGAACGTAAATGAAGACATTTT
1 CACATTAAGCATTTAAAAT-GAACGTAAATGAACACATTTT
58294367 TAATATAACA
Statistics
Matches: 91, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
69 34 0.37
70 4 0.04
71 53 0.58
ACGTcount: A:0.43, C:0.18, G:0.11, T:0.28
Consensus pattern (69 bp):
CACATTAAGCATTTAAAATGAACGTAAATGAACACATTTTCAAGACAACAAATCAACACTTTACA
GCAA
Found at i:58302721 original size:28 final size:28
Alignment explanation
Indices: 58302656--58302806 Score: 214
Period size: 28 Copynumber: 5.4 Consensus size: 28
58302646 GAGATTGGCG
* * * *
58302656 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
58302685 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
58302713 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
58302741 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
58302769 CTAAGTGTGCAAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
58302796 CTGAGTGTGCG
1 CTAAGTGTGCG
58302807 GACTTAATAT
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 23 0.20
28 75 0.66
29 15 0.13
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:58307918 original size:26 final size:27
Alignment explanation
Indices: 58307889--58307942 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
58307879 TCACACAAGT
*
58307889 TAGTCATTT-ACGCACGAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
* *
58307915 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
58307942 T
1 T
58307943 GGTAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACACGAGGGGCAAAA
Found at i:58308020 original size:54 final size:54
Alignment explanation
Indices: 58307947--58308061 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
58307937 CAAAATGGTA
* *
58307947 ATTT-TACCCTACAATGGTATCTCGGTAATTCTATCCTACAGGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATCTCGGTAATTCTATCCTACAGGGGTATTTCGAT
* * * *
58308000 ATTTCTACCCTACAAGGGTATTTTGGTAATTCTATTCTATAGGGGTATTTCGAT
1 ATTTCTACCCTACAAGGGTATCTCGGTAATTCTATCCTACAGGGGTATTTCGAT
*
58308054 AATTCTAC
1 ATTTCTAC
58308062 AACTTATCCA
Statistics
Matches: 54, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
53 4 0.07
54 50 0.93
ACGTcount: A:0.24, C:0.18, G:0.17, T:0.40
Consensus pattern (54 bp):
ATTTCTACCCTACAAGGGTATCTCGGTAATTCTATCCTACAGGGGTATTTCGAT
Found at i:58308058 original size:27 final size:27
Alignment explanation
Indices: 58307943--58308060 Score: 128
Period size: 27 Copynumber: 4.4 Consensus size: 27
58307933 GGGGCAAAAT
* * ** *
58307943 GGTAATTTTACCCTACAATGGTATCTC
1 GGTAATTCTATCCTACAGGGGTATTTC
58307970 GGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTATCCTACAGGGGTATTTC
* * * *
58307997 GGTATTTCTACCCTACAAGGGTATTTT
1 GGTAATTCTATCCTACAGGGGTATTTC
* *
58308024 GGTAATTCTATTCTATAGGGGTATTTC
1 GGTAATTCTATCCTACAGGGGTATTTC
*
58308051 GATAATTCTA
1 GGTAATTCTA
58308061 CAACTTATCC
Statistics
Matches: 75, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 75 1.00
ACGTcount: A:0.25, C:0.17, G:0.19, T:0.40
Consensus pattern (27 bp):
GGTAATTCTATCCTACAGGGGTATTTC
Found at i:58313473 original size:27 final size:26
Alignment explanation
Indices: 58313425--58313476 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
58313415 GCGAGGCTGC
*
58313425 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
58313451 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
58313477 TTGCAGCGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:58315334 original size:27 final size:27
Alignment explanation
Indices: 58315304--58315479 Score: 201
Period size: 27 Copynumber: 6.5 Consensus size: 27
58315294 ATTGAGTCCA
* * * *
58315304 CACACTCAGTGCTATATAATCAACTCG
1 CACACTTAGTGCTACATAGTCAAATCG
* *
58315331 CACACTTAGTGCTACGTAATCAAATCG
1 CACACTTAGTGCTACATAGTCAAATCG
58315358 CACACTTAGTGCTACATAGTCAAACTCG
1 CACACTTAGTGCTACATAGTCAAA-TCG
** * *
58315386 CACACTTAGTGCCGCATGGTCAATTCG
1 CACACTTAGTGCTACATAGTCAAATCG
* **
58315413 CACACTTAGTGC-ATCATATTCATTTCG
1 CACACTTAGTGCTA-CATAGTCAAATCG
*
58315440 CACACTTAGTGCAACATAGTCAAATCG
1 CACACTTAGTGCTACATAGTCAAATCG
58315467 CACACTTAGTGCT
1 CACACTTAGTGCT
58315480 GTACAATTTA
Statistics
Matches: 128, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CACACTTAGTGCTACATAGTCAAATCG
Found at i:58315441 original size:82 final size:81
Alignment explanation
Indices: 58315323--58315478 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
58315313 TGCTATATAA
* *
58315323 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
58315388 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
58315405 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
58315469 CACTTAGTGC
65 CACTTAGTGC
58315479 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:58323387 original size:27 final size:27
Alignment explanation
Indices: 58323357--58323534 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
58323347 ATATTGAGTC
* * * *
58323357 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
58323384 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
58323411 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
58323439 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
58323466 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
58323493 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
58323520 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
58323535 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:58323496 original size:82 final size:81
Alignment explanation
Indices: 58323378--58323533 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
58323368 TGCTATATAA
* *
58323378 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
58323443 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
58323460 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
58323524 CACTTAGTGC
65 CACTTAGTGC
58323534 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:58325506 original size:27 final size:27
Alignment explanation
Indices: 58325441--58325556 Score: 117
Period size: 27 Copynumber: 4.3 Consensus size: 27
58325431 GGCAAAATGG
* * * *
58325441 TAATTTTACCCCATAAGGGTATCTC-A
1 TAATTCTACCCTATAGGGGTATTTCGA
* *
58325467 GAATTCTATCCTATAGGGGTATTTCGA
1 TAATTCTACCCTATAGGGGTATTTCGA
* * *
58325494 TATTTCTACCCTACAAGGGTATTTCGA
1 TAATTCTACCCTATAGGGGTATTTCGA
* * *
58325521 TAATTCTATCGTATAGGGGTATTTCGG
1 TAATTCTACCCTATAGGGGTATTTCGA
58325548 TAATTCTAC
1 TAATTCTAC
58325557 AACTTATCCA
Statistics
Matches: 71, Mismatches: 18, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
26 19 0.27
27 52 0.73
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.38
Consensus pattern (27 bp):
TAATTCTACCCTATAGGGGTATTTCGA
Found at i:58325538 original size:54 final size:53
Alignment explanation
Indices: 58325441--58325556 Score: 151
Period size: 54 Copynumber: 2.2 Consensus size: 53
58325431 GGCAAAATGG
* * *
58325441 TAATTTTACCCCATAAGGGTATCTCAGAATTCTATCCTATAGGGGTATTTCGA
1 TAATTCTACCCTACAAGGGTATCTCAGAATTCTATCCTATAGGGGTATTTCGA
* * * * *
58325494 TATTTCTACCCTACAAGGGTATTTCGATAATTCTATCGTATAGGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATCTC-AGAATTCTATCCTATAGGGGTATTTCGA
58325548 TAATTCTAC
1 TAATTCTAC
58325557 AACTTATCCA
Statistics
Matches: 53, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
53 20 0.38
54 33 0.62
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.38
Consensus pattern (53 bp):
TAATTCTACCCTACAAGGGTATCTCAGAATTCTATCCTATAGGGGTATTTCGA
Found at i:58329435 original size:40 final size:40
Alignment explanation
Indices: 58329359--58329582 Score: 308
Period size: 40 Copynumber: 5.6 Consensus size: 40
58329349 CAAACTCAAG
* * *
58329359 TGCCTTCGGGATTTAG-CCGGATATAGT-AACTTGCACAGA
1 TGCCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAA
*
58329398 TGCCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
* * * *
58329438 AGCCTTCGGGACTTAGCCCGAATATAATCACTAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
*
58329478 TGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
*
58329518 TGCCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
* * *
58329558 TGCCCTCGGGACTTAACCCAGATAT
1 TGCCTTCGGGACTTAGCCCGGATAT
58329583 CATTCGAATA
Statistics
Matches: 166, Mismatches: 17, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 14 0.08
40 150 0.90
41 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
Found at i:58337884 original size:40 final size:40
Alignment explanation
Indices: 58337808--58338031 Score: 319
Period size: 40 Copynumber: 5.6 Consensus size: 40
58337798 CAAACTCAAG
* * *
58337808 TGCCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAGA
1 TGCCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAA
*
58337847 TGCCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
* * *
58337887 AGCCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
*
58337927 TGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
*
58337967 TGCCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
*
58338007 TGCCCTT-GGGACTTAACCCGGATAT
1 TG-CCTTCGGGACTTAGCCCGGATAT
58338032 CATTCGAATA
Statistics
Matches: 169, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 14 0.08
40 148 0.88
41 7 0.04
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.23
Consensus pattern (40 bp):
TGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
Found at i:58342797 original size:11 final size:11
Alignment explanation
Indices: 58342774--58342812 Score: 55
Period size: 10 Copynumber: 3.7 Consensus size: 11
58342764 CTAGGATGAT
58342774 TGTTTTG-GCA
1 TGTTTTGAGCA
58342784 TGTTTTGAGCA
1 TGTTTTGAGCA
*
58342795 TG-TTTGATCA
1 TGTTTTGAGCA
58342805 TGTTTTGA
1 TGTTTTGA
58342813 ATAGGTTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
10 16 0.62
11 10 0.38
ACGTcount: A:0.15, C:0.08, G:0.26, T:0.51
Consensus pattern (11 bp):
TGTTTTGAGCA
Found at i:58343161 original size:30 final size:30
Alignment explanation
Indices: 58343125--58343191 Score: 109
Period size: 30 Copynumber: 2.2 Consensus size: 30
58343115 GTGTCATATC
*
58343125 CGTGTGATTCACAAGGCCTGGCCACAT-GA
1 CGTGTGAGTCACAAGGCCTGGCCACATGGA
58343154 CTGTGTGAGTCACAAGGCCTGGCCACATGGA
1 C-GTGTGAGTCACAAGGCCTGGCCACATGGA
58343185 CGTGTGA
1 CGTGTGA
58343192 CCCCTGTAGC
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
29 1 0.03
30 31 0.89
31 3 0.09
ACGTcount: A:0.22, C:0.25, G:0.31, T:0.21
Consensus pattern (30 bp):
CGTGTGAGTCACAAGGCCTGGCCACATGGA
Found at i:58354528 original size:30 final size:30
Alignment explanation
Indices: 58354493--58354553 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
58354483 TCCTTAACTC
58354493 AAACTTTGGCAAAATTACAATTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * *
58354523 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
58354553 A
1 A
58354554 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:58358203 original size:14 final size:14
Alignment explanation
Indices: 58358184--58358219 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
58358174 TCAGTTAAAA
58358184 CACAGTCATACAAC
1 CACAGTCATACAAC
*
58358198 CACAGTCATACAAT
1 CACAGTCATACAAC
58358212 CACAGTCA
1 CACAGTCA
58358220 AATCTATCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.42, C:0.33, G:0.08, T:0.17
Consensus pattern (14 bp):
CACAGTCATACAAC
Found at i:58358305 original size:27 final size:28
Alignment explanation
Indices: 58358275--58358335 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
58358265 CAAAACAATT
* **
58358275 ATTTTACCCTACAA-GGGTATTTTGGTA
1 ATTTTACACTACAAGGGGTATTTCAGTA
58358302 ATTTTACACTACAAGGGGTATTTCAGTA
1 ATTTTACACTACAAGGGGTATTTCAGTA
58358330 ATTTTA
1 ATTTTA
58358336 TAAACCGGTG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 13 0.43
28 17 0.57
ACGTcount: A:0.30, C:0.13, G:0.16, T:0.41
Consensus pattern (28 bp):
ATTTTACACTACAAGGGGTATTTCAGTA
Found at i:58358358 original size:27 final size:27
Alignment explanation
Indices: 58358315--58358389 Score: 109
Period size: 27 Copynumber: 2.8 Consensus size: 27
58358305 TTACACTACA
58358315 AGGGGTATTTC-AGTAATTTTATAAACC
1 AGGGGTATTTCGA-TAATTTTATAAACC
58358342 -GGTGGTATTTCGATAATTTTATAAACC
1 AGG-GGTATTTCGATAATTTTATAAACC
*
58358369 AGGGGTATTTTGATAATTTTA
1 AGGGGTATTTCGATAATTTTA
58358390 CAAATTGGGG
Statistics
Matches: 44, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
26 2 0.05
27 39 0.89
28 3 0.07
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (27 bp):
AGGGGTATTTCGATAATTTTATAAACC
Found at i:58363203 original size:19 final size:19
Alignment explanation
Indices: 58363179--58363219 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
58363169 TTTCTACAAT
58363179 CGTCCACATAGCTGGTGCC
1 CGTCCACATAGCTGGTGCC
58363198 CGTCCACATAGCTGGTGCC
1 CGTCCACATAGCTGGTGCC
58363217 CGT
1 CGT
58363220 ATACTTTCCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.15, C:0.37, G:0.27, T:0.22
Consensus pattern (19 bp):
CGTCCACATAGCTGGTGCC
Found at i:58364715 original size:28 final size:27
Alignment explanation
Indices: 58364671--58364735 Score: 85
Period size: 28 Copynumber: 2.4 Consensus size: 27
58364661 CATCACAGAC
* * * *
58364671 ACAGTATCAGGTGGGCTTTAGCCCATT
1 ACAGAATCAGGTAGGCTTAAGCCCAAT
58364698 AACAGAATCAGGTAGGCTTAAGCCCAAT
1 -ACAGAATCAGGTAGGCTTAAGCCCAAT
58364726 ACAGAATCAG
1 ACAGAATCAG
58364736 TATCAGATGC
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
27 10 0.30
28 23 0.70
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.22
Consensus pattern (27 bp):
ACAGAATCAGGTAGGCTTAAGCCCAAT
Found at i:58366761 original size:10 final size:10
Alignment explanation
Indices: 58366754--58366786 Score: 57
Period size: 10 Copynumber: 3.2 Consensus size: 10
58366744 AATCACTCCT
58366754 CACAACTCTC
1 CACAACTCTC
58366764 CACAACTCTC
1 CACAACTCTC
58366774 CACAACTCCTC
1 CACAACT-CTC
58366785 CA
1 CA
58366787 TCAAAATTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 17 0.77
11 5 0.23
ACGTcount: A:0.30, C:0.52, G:0.00, T:0.18
Consensus pattern (10 bp):
CACAACTCTC
Found at i:58372584 original size:22 final size:22
Alignment explanation
Indices: 58372553--58372609 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 22
58372543 AAATACGTTT
*
58372553 GCACAAAGCCATAGTCAAGATG
1 GCACAGAGCCATAGTCAAGATG
** * * *
58372575 GCACAGAGCCATTTTTAGGTTG
1 GCACAGAGCCATAGTCAAGATG
58372597 GCACAGAGCCATA
1 GCACAGAGCCATA
58372610 ATCAGATTAC
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.33, C:0.23, G:0.25, T:0.19
Consensus pattern (22 bp):
GCACAGAGCCATAGTCAAGATG
Found at i:58372951 original size:27 final size:27
Alignment explanation
Indices: 58372921--58373008 Score: 79
Period size: 27 Copynumber: 3.3 Consensus size: 27
58372911 CAAAACAGTC
*
58372921 ATTTTACCCTACAGGGGTATTTTGGTA
1 ATTTTACCCTACAGGGGTATTTCGGTA
** * * *
58372948 ATTTTATACTATAAGGGTATTTCGATA
1 ATTTTACCCTACAGGGGTATTTCGGTA
** *
58372975 ATTTTA-CAAACTGGGGGTATTTCGGTA
1 ATTTTACCCTAC-AGGGGTATTTCGGTA
58373002 ATTTTAC
1 ATTTTAC
58373009 AAATCGAGAT
Statistics
Matches: 46, Mismatches: 13, Indels: 3
0.74 0.21 0.05
Matches are distributed among these distances:
26 1 0.02
27 45 0.98
ACGTcount: A:0.27, C:0.11, G:0.19, T:0.42
Consensus pattern (27 bp):
ATTTTACCCTACAGGGGTATTTCGGTA
Found at i:58373009 original size:27 final size:27
Alignment explanation
Indices: 58372935--58373039 Score: 106
Period size: 27 Copynumber: 3.9 Consensus size: 27
58372925 TACCCTACAG
* * * *
58372935 GGGTATTTTGGTAATTTTATACTAT-AA
1 GGGTATTTCGGTAATTTTACA-AATCGA
* *
58372962 GGGTATTTCGATAATTTTACAAA-CTGG
1 GGGTATTTCGGTAATTTTACAAATC-GA
58372989 GGGTATTTCGGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
**
58373016 GATTATTTCGGTAATTTTACAAAT
1 GGGTATTTCGGTAATTTTACAAAT
58373040 TAGGGTCTTA
Statistics
Matches: 65, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
26 1 0.02
27 63 0.97
28 1 0.02
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.42
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAATCGA
Found at i:58373405 original size:18 final size:17
Alignment explanation
Indices: 58373376--58373409 Score: 59
Period size: 17 Copynumber: 1.9 Consensus size: 17
58373366 TACCCACGCG
58373376 GGCCCATAGGCCCATTA
1 GGCCCATAGGCCCATTA
58373393 GGCCCATACGGCCCATT
1 GGCCCATA-GGCCCATT
58373410 TAACCCAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.21, C:0.38, G:0.24, T:0.18
Consensus pattern (17 bp):
GGCCCATAGGCCCATTA
Found at i:58397172 original size:43 final size:43
Alignment explanation
Indices: 58397101--58397223 Score: 165
Period size: 43 Copynumber: 2.9 Consensus size: 43
58397091 ACTTCGGTTC
* * * *
58397101 ATCCAATGATGCACTGTATGCGCCAGTATATTTTCTTTGATTT
1 ATCCAATGATGCACTATGTGTGCCAGTATATTTTCTTAGATTT
* * *
58397144 CTCCAATGATGCACTATGTGTGCTAGTATATTTTCTTAGGTTT
1 ATCCAATGATGCACTATGTGTGCCAGTATATTTTCTTAGATTT
* *
58397187 ATTCGATGATGCACTATGTGTGCCAGTATATTTTCTT
1 ATCCAATGATGCACTATGTGTGCCAGTATATTTTCTT
58397224 CGACTTGTCT
Statistics
Matches: 69, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 69 1.00
ACGTcount: A:0.22, C:0.17, G:0.18, T:0.43
Consensus pattern (43 bp):
ATCCAATGATGCACTATGTGTGCCAGTATATTTTCTTAGATTT
Found at i:58397240 original size:43 final size:43
Alignment explanation
Indices: 58397106--58397259 Score: 148
Period size: 43 Copynumber: 3.6 Consensus size: 43
58397096 GGTTCATCCA
* * * * * **
58397106 ATGATGCACTGTATGCGCCAGTATATTTTCTTTGATTTCTCCA
1 ATGATGCACTATGTGTGCCAGTATATTTTCTTAGATTTATCTG
* *
58397149 ATGATGCACTATGTGTGCTAGTATATTTTCTTAGGTTTAT-TCG
1 ATGATGCACTATGTGTGCCAGTATATTTTCTTAGATTTATCT-G
* * *
58397192 ATGATGCACTATGTGTGCCAGTATATTTTCTTCGACTTGTCTG
1 ATGATGCACTATGTGTGCCAGTATATTTTCTTAGATTTATCTG
* * * *
58397235 TTGATGCATTGTGTGTGCCAATATA
1 ATGATGCACTATGTGTGCCAGTATA
58397260 ATTACATCGG
Statistics
Matches: 91, Mismatches: 18, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
43 90 0.99
44 1 0.01
ACGTcount: A:0.21, C:0.16, G:0.20, T:0.43
Consensus pattern (43 bp):
ATGATGCACTATGTGTGCCAGTATATTTTCTTAGATTTATCTG
Found at i:58397251 original size:86 final size:86
Alignment explanation
Indices: 58397096--58397294 Score: 200
Period size: 86 Copynumber: 2.3 Consensus size: 86
58397086 GTTATACTTC
* * * * * * *
58397096 GGTTCATCCAATGATGCACTGTATGCGCCAGTATATTTTCTTTGATTTCTCCAATGATGCACTAT
1 GGTTTATCCGATGATGCACTATGTGTGCCAGTATATTTTCTTCGACTTCTCCAATGATGCACTAT
* * * * *
58397161 GTGTGCTAGTATATTTTCTTA
66 GTGTGCCAATATAATTACATA
* * *** * *
58397182 GGTTTATTCGATGATGCACTATGTGTGCCAGTATATTTTCTTCGACTTGTCTGTTGATGCATTGT
1 GGTTTATCCGATGATGCACTATGTGTGCCAGTATATTTTCTTCGACTTCTCCAATGATGCACTAT
*
58397247 GTGTGCCAATATAATTACATC
66 GTGTGCCAATATAATTACATA
*
58397268 GGTTTATCCGATGATACACTTATGTGT
1 GGTTTATCCGATGATGCAC-TATGTGT
58397295 CAATGTGATT
Statistics
Matches: 90, Mismatches: 22, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
86 83 0.92
87 7 0.08
ACGTcount: A:0.22, C:0.17, G:0.20, T:0.42
Consensus pattern (86 bp):
GGTTTATCCGATGATGCACTATGTGTGCCAGTATATTTTCTTCGACTTCTCCAATGATGCACTAT
GTGTGCCAATATAATTACATA
Found at i:58401981 original size:30 final size:30
Alignment explanation
Indices: 58401924--58401981 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
58401914 TTTTTGAACC
**
58401924 TAGGGGAACAATGGTCATTTTGTCAAAGTT
1 TAGGGGAACAATGGTCATTTTACCAAAGTT
*
58401954 TAGGGGCAA-AATGGTCGTTTTACCAAAG
1 TAGGGG-AACAATGGTCATTTTACCAAAG
58401982 ATATGAATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 22 0.92
31 2 0.08
ACGTcount: A:0.31, C:0.12, G:0.28, T:0.29
Consensus pattern (30 bp):
TAGGGGAACAATGGTCATTTTACCAAAGTT
Found at i:58402377 original size:46 final size:44
Alignment explanation
Indices: 58402319--58402528 Score: 158
Period size: 46 Copynumber: 4.6 Consensus size: 44
58402309 TCACTTGTGT
*
58402319 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-CATTA-GA
* * *
58402365 GAGCCAGTGTAAGACCATGTCTGGGATATGTCATCGG--TATTGAAACAA
1 GAGCCAGTGTAAGA-CATGTCTGGGACATG-CATCGGCCCATT---A-GA
* * * *
58402413 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGTAGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-C-ATTAG-A
* * *
58402460 -AGTCAGTGTAAGACATGTCTGGGACATGCATCGG-CTATGAGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCCATTAGA
* *
58402502 TGTGTCAGTGTAAGAGCATGTCTGGGA
1 -GAGCCAGTGTAAGA-CATGTCTGGGA
58402529 TATGGTATCG
Statistics
Matches: 131, Mismatches: 20, Indels: 27
0.74 0.11 0.15
Matches are distributed among these distances:
42 1 0.01
43 3 0.02
44 12 0.09
45 15 0.11
46 48 0.37
47 30 0.23
48 20 0.15
50 2 0.02
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (44 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCCATTAGA
Found at i:58405000 original size:436 final size:436
Alignment explanation
Indices: 58404182--58405037 Score: 1444
Period size: 436 Copynumber: 2.0 Consensus size: 436
58404172 GAGGATGACA
58404182 TAGAGAGTAACACGCCGGCTCTTACTGAAGGGACTGTGCCAGTTGAGGGTGAGCCCGTGACTATG
1 TAGAGAGTAACACGCCGGCTCTTACTGAAGGGACTGTGCCAGTTGAGGGTGAGCCCGTGACTATG
* *
58404247 GGCCAAGACGGAGGGGCTAGAGAAGCCTACCTCCAAATGATGGATGCTTAGTACACAGAGTTCAT
66 AGCCAAGACGGAGGGGCTAGAGAAGCCTACCTCCAAATGATGGATGCTAAGTACACAGAGTTCAT
*
58404312 TCATGCGAATCCAAACACTCCACCTCCCCCACCTCCTCCAATTCCTCAGTATGCTCCCGTAGCTC
131 TCATGCAAATCCAAACACTCCACCTCCCCCACCTCCTCCAATTCCTCAGTATGCTCCCGTAGCTC
* * *
58404377 CACAAGGAGCAGACATGTTTAGAAGGGAGAAACCTCCGATAGACAAGATTCGGAAGCAAGAGGCC
196 CACAACGAGCAGACATGTTTAGAAGGGAGAAACCTCCGATAGACAAGATCCGAAAGCAAGAGGCC
*
58404442 GAGGAATTTCGAGCCAAAATAGATGACGACCCGGAGAGAGCAGAGTTTTGGTTGGAGAATACCAT
261 GAGGAATTTCGAGCCAAAATAGATGACGACCCGGAGAGAACAGAGTTTTGGTTGGAGAATACCAT
* *
58404507 CAGAGTATTTGATGAACTATCATACACACCTGAAGAGTGTGTGAAGTGTGCAGTGTCACAACTAC
326 CAGAGAATTTGATGAACTATCATACACACCTGAAGAGTGCGTGAAGTGTGCAGTGTCACAACTAC
*
58404572 GAGACTCGGCGTACCAATGATGGAATACTTAACACGCCGGCTAACG
391 GAGACTCGGCCTACCAATGATGGAATACTTAACACGCCGGCTAACG
* *
58404618 TAGAGAGTAACATGCCGGCTCTTACTGAAGGGACTGTGCCAGTTGAGGGTGAGTCCGTGACTATG
1 TAGAGAGTAACACGCCGGCTCTTACTGAAGGGACTGTGCCAGTTGAGGGTGAGCCCGTGACTATG
* * * *
58404683 AGCCAAGATGGAGGGGCTAGAGAAGCCTACCTCGAAATGATGGATGCTAAGTACACGGAGTTCGT
66 AGCCAAGACGGAGGGGCTAGAGAAGCCTACCTCCAAATGATGGATGCTAAGTACACAGAGTTCAT
* * * *
58404748 TCGTGCAAATCCAGACACTCCACCTCCCCTACCTCCTCTAATTCCTCAGTATGCTCCCGTAGCTC
131 TCATGCAAATCCAAACACTCCACCTCCCCCACCTCCTCCAATTCCTCAGTATGCTCCCGTAGCTC
*
58404813 CACAACGAGCAGACATGTTTA-AGAGGGAGAAACCTCCGATAGACAAGATCCGAAAGCAAGGGGC
196 CACAACGAGCAGACATGTTTAGA-AGGGAGAAACCTCCGATAGACAAGATCCGAAAGCAAGAGGC
* *
58404877 CTAGGAATTTCGTGCCAAAATAGATGACGACCCGGAGAGAACAGAGTTTTGGTTGGAGAATACCA
260 CGAGGAATTTCGAGCCAAAATAGATGACGACCCGGAGAGAACAGAGTTTTGGTTGGAGAATACCA
* * **
58404942 TCAGAGAATTTGATGAACTATCATACACGCCTGAAGAGTGCGTGAAGTGTGTAGTGTCACTCCTA
325 TCAGAGAATTTGATGAACTATCATACACACCTGAAGAGTGCGTGAAGTGTGCAGTGTCACAACTA
*
58405007 CGAGACTTGGCCTACCAATGATGGAATACTT
390 CGAGACTCGGCCTACCAATGATGGAATACTT
58405038 TCGTGTCCAT
Statistics
Matches: 391, Mismatches: 28, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
435 1 0.00
436 390 1.00
ACGTcount: A:0.30, C:0.23, G:0.26, T:0.21
Consensus pattern (436 bp):
TAGAGAGTAACACGCCGGCTCTTACTGAAGGGACTGTGCCAGTTGAGGGTGAGCCCGTGACTATG
AGCCAAGACGGAGGGGCTAGAGAAGCCTACCTCCAAATGATGGATGCTAAGTACACAGAGTTCAT
TCATGCAAATCCAAACACTCCACCTCCCCCACCTCCTCCAATTCCTCAGTATGCTCCCGTAGCTC
CACAACGAGCAGACATGTTTAGAAGGGAGAAACCTCCGATAGACAAGATCCGAAAGCAAGAGGCC
GAGGAATTTCGAGCCAAAATAGATGACGACCCGGAGAGAACAGAGTTTTGGTTGGAGAATACCAT
CAGAGAATTTGATGAACTATCATACACACCTGAAGAGTGCGTGAAGTGTGCAGTGTCACAACTAC
GAGACTCGGCCTACCAATGATGGAATACTTAACACGCCGGCTAACG
Found at i:58406769 original size:17 final size:17
Alignment explanation
Indices: 58406747--58406781 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
58406737 CCTCCTCACA
58406747 CGGGCAGACAACACAGC
1 CGGGCAGACAACACAGC
58406764 CGGGCAGACAACACAGC
1 CGGGCAGACAACACAGC
58406781 C
1 C
58406782 ATGTCAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.37, G:0.29, T:0.00
Consensus pattern (17 bp):
CGGGCAGACAACACAGC
Found at i:58420698 original size:30 final size:30
Alignment explanation
Indices: 58420640--58420698 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
58420630 ATTTTCGAGC
* **
58420640 CTAGGGGAAAAATGGTTATTTTGTCAAAGT
1 CTAGGGGAAAAATGGTCATTTTACCAAAGT
* *
58420670 CTAGGGGCAAAATGGTCGTTTTACCAAAG
1 CTAGGGGAAAAATGGTCATTTTACCAAAG
58420699 ATATGAATTT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.32, C:0.12, G:0.27, T:0.29
Consensus pattern (30 bp):
CTAGGGGAAAAATGGTCATTTTACCAAAGT
Found at i:58425066 original size:118 final size:118
Alignment explanation
Indices: 58424851--58425066 Score: 254
Period size: 118 Copynumber: 1.8 Consensus size: 118
58424841 GGTTTATCGA
* * * * * *
58424851 TTTAAGTTCACAACCTCCAAAGTAGCTAGTAGGCCTAAGCTCCTAGCTGATATTATAAGAGCTCG
1 TTTAAGATCACAACCTCCAAAGTAGCTAGCAGACCTAAGCTCCCAGCTGACATTATAAGAGCTCA
* * * * ** *
58424916 CAGAGTTAAGTTTGTAGCTCCAACACAGCTAGTGGACCTACGCTCGTTTGTAG
66 CAGAATTAAGCTCGCAAATCCAACACAACTAGTGGACCTACGCTCGTTTGTAG
* * *
58424969 TTTAAGATCGCAACCTCTAAAGTAGCTAGCAGACCTACA-TTCCCAGCTGACATTATAAGAGCTC
1 TTTAAGATCACAACCTCCAAAGTAGCTAGCAGACCTA-AGCTCCCAGCTGACATTATAAGAGCTC
**
58425033 ACAGAATTAAGCTCGCAAATCCAGTACAACTAGT
65 ACAGAATTAAGCTCGCAAATCCAACACAACTAGT
58425067 AAGACTACCT
Statistics
Matches: 79, Mismatches: 18, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
118 78 0.99
119 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (118 bp):
TTTAAGATCACAACCTCCAAAGTAGCTAGCAGACCTAAGCTCCCAGCTGACATTATAAGAGCTCA
CAGAATTAAGCTCGCAAATCCAACACAACTAGTGGACCTACGCTCGTTTGTAG
Found at i:58426312 original size:25 final size:28
Alignment explanation
Indices: 58426282--58426340 Score: 79
Period size: 26 Copynumber: 2.2 Consensus size: 28
58426272 TTTATGAAGG
*
58426282 AAATAAAAATATT-TAAATTTAT-TT-T
1 AAATAAAAATATTATAAAATTATGTTGT
58426307 AAATAAAAAATATTATAAAATTATGTTGT
1 AAAT-AAAAATATTATAAAATTATGTTGT
58426336 AAATA
1 AAATA
58426341 TTGATTTACC
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
25 4 0.14
26 9 0.31
27 8 0.28
28 3 0.10
29 5 0.17
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (28 bp):
AAATAAAAATATTATAAAATTATGTTGT
Found at i:58427194 original size:28 final size:28
Alignment explanation
Indices: 58427162--58427215 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
58427152 TGTAAGAAAT
* * *
58427162 TATTAATAATATTATTTAAATTATAATA
1 TATTAATAATAGTATTCAAATCATAATA
*
58427190 TATTAATATTAGTATTCAAATCATAA
1 TATTAATAATAGTATTCAAATCATAA
58427216 CGAATATTTG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (28 bp):
TATTAATAATAGTATTCAAATCATAATA
Found at i:58427962 original size:25 final size:24
Alignment explanation
Indices: 58427918--58427966 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 24
58427908 AATTTAAATT
*
58427918 TTATATTAATATGAAGTAAATATAA
1 TTATATTAATATGAAATAAA-ATAA
*
58427943 TTATATTAATATTAAATAAAATAA
1 TTATATTAATATGAAATAAAATAA
58427967 AAATCCCCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 4 0.18
25 18 0.82
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.41
Consensus pattern (24 bp):
TTATATTAATATGAAATAAAATAA
Found at i:58429783 original size:21 final size:21
Alignment explanation
Indices: 58429759--58429806 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 21
58429749 TAGAGTCGTA
* *
58429759 TTAAAATTTAGTTAAGAAATT
1 TTAAAATTTAGATAACAAATT
** *
58429780 TTAATGTTTAGATAACTAATT
1 TTAAAATTTAGATAACAAATT
58429801 TTAAAA
1 TTAAAA
58429807 AAAAGGACTA
Statistics
Matches: 20, Mismatches: 7, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.46, C:0.02, G:0.08, T:0.44
Consensus pattern (21 bp):
TTAAAATTTAGATAACAAATT
Found at i:58430021 original size:58 final size:58
Alignment explanation
Indices: 58429940--58430069 Score: 210
Period size: 58 Copynumber: 2.3 Consensus size: 58
58429930 TAATAGAAAC
* *
58429940 AAAAAC-AATTAA-GTTTGGCTTATAATTGATGGCAATTTTGTAAATTTTGCAAAATT
1 AAAAACAAATTAATTTTTAGCTTATAATTGATGGCAATTTTGTAAATTTTGCAAAATT
* *
58429996 AAAAATAAATTAATTTTTAGCTTATAATTGATGGCAATTTTGTAAATTTTTCAAAATT
1 AAAAACAAATTAATTTTTAGCTTATAATTGATGGCAATTTTGTAAATTTTGCAAAATT
58430054 AAAAACAAATTAATTT
1 AAAAACAAATTAATTT
58430070 GAAGAAATAA
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
56 5 0.07
57 6 0.09
58 56 0.84
ACGTcount: A:0.43, C:0.06, G:0.10, T:0.41
Consensus pattern (58 bp):
AAAAACAAATTAATTTTTAGCTTATAATTGATGGCAATTTTGTAAATTTTGCAAAATT
Found at i:58447885 original size:10 final size:9
Alignment explanation
Indices: 58447872--58447922 Score: 57
Period size: 10 Copynumber: 5.2 Consensus size: 9
58447862 ACACCTATTA
58447872 TTTATTTTAT
1 TTTATTTT-T
58447882 TTTATTTTT
1 TTTATTTTT
*
58447891 ATCTATTTTT
1 -TTTATTTTT
58447901 TGATTATTTTT
1 T--TTATTTTT
58447912 TTTATTTTT
1 TTTATTTTT
58447921 TT
1 TT
58447923 CCTTTTAATA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
9 12 0.33
10 16 0.44
11 8 0.22
ACGTcount: A:0.16, C:0.02, G:0.02, T:0.80
Consensus pattern (9 bp):
TTTATTTTT
Found at i:58447901 original size:12 final size:11
Alignment explanation
Indices: 58447867--58447922 Score: 55
Period size: 12 Copynumber: 5.1 Consensus size: 11
58447857 TATAAACACC
58447867 TATTATTTATTT
1 TATTATTT-TTT
58447879 TATT-TTATTTT
1 TATTATT-TTTT
58447890 TATCTATTTTTT
1 TAT-TATTTTTT
*
58447902 GATTA-TTTTT
1 TATTATTTTTT
58447912 T-TTATTTTTT
1 TATTATTTTTT
58447922 T
1 T
58447923 CCTTTTAATA
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
9 3 0.08
10 11 0.29
11 10 0.26
12 12 0.32
13 2 0.05
ACGTcount: A:0.18, C:0.02, G:0.02, T:0.79
Consensus pattern (11 bp):
TATTATTTTTT
Done.