Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 184 of 255
Found at i:60790320 original size:79 final size:79
Alignment explanation
Indices: 60790167--60790331 Score: 203
Period size: 79 Copynumber: 2.1 Consensus size: 79
60790157 GGACTAAGAT
* **
60790167 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGAAGCGAGTTACTAA
*
60790232 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
*
60790246 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAAG-GAG-TAG
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCA-TTGAAGCGAGTTA-
* *
60790308 CTATATCC-GGTTAAATT
62 CTAAATCCGGGTTAAATC
60790325 CCGAAGG
1 CCGAAGG
60790332 TACGTGATTC
Statistics
Matches: 75, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 20 0.27
81 4 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGAAGCGAGTTACTAA
ATCCGGGTTAAATC
Found at i:60793431 original size:39 final size:39
Alignment explanation
Indices: 60793339--60793494 Score: 161
Period size: 39 Copynumber: 4.0 Consensus size: 39
60793329 AGACGTTTTG
**
60793339 AGTATTGTGATATATGCTTAAATGTTATAAGATT-TATA
1 AGTATTGTGATATATGCTTAAATGTTATGTGATTATATA
* * * *
60793377 TGTATATTATGATATATGCTTGAGTGTTATGTGATTATATA
1 AG--TATTGTGATATATGCTTAAATGTTATGTGATTATATA
* * *
60793418 AGTATTGTTATATATGCTTAAATGTTATGTGATTGTATG
1 AGTATTGTGATATATGCTTAAATGTTATGTGATTATATA
* * ** *
60793457 AGTATTATGATACATGCTTGGATGTTAGGTGATTATAT
1 AGTATTGTGATATATGCTTAAATGTTATGTGATTATAT
60793495 GTGTAACATT
Statistics
Matches: 95, Mismatches: 20, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
38 1 0.01
39 62 0.65
40 27 0.28
41 5 0.05
ACGTcount: A:0.31, C:0.03, G:0.20, T:0.46
Consensus pattern (39 bp):
AGTATTGTGATATATGCTTAAATGTTATGTGATTATATA
Found at i:60793489 original size:78 final size:79
Alignment explanation
Indices: 60793339--60793494 Score: 219
Period size: 78 Copynumber: 2.0 Consensus size: 79
60793329 AGACGTTTTG
*
60793339 AGTATTGTGATATATGCTTAAATGTTATAAGATTTATATGTATATTATGATATATGCTTGAGTGT
1 AGTATTGTGATATATGCTTAAATGTTATAAGATTTATATGTATATTATGATACATGCTTGAGTGT
*
60793404 TATGTGATTATATA
66 TAGGTGATTATATA
* ** *
60793418 AGTATTGTTATATATGCTTAAATGTTATGTGA-TTGTATG-AGTATTATGATACATGCTTG-GAT
1 AGTATTGTGATATATGCTTAAATGTTATAAGATTTATATGTA-TATTATGATACATGCTTGAG-T
60793480 GTTAGGTGATTATAT
64 GTTAGGTGATTATAT
60793495 GTGTAACATT
Statistics
Matches: 69, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
77 2 0.03
78 38 0.55
79 29 0.42
ACGTcount: A:0.31, C:0.03, G:0.20, T:0.46
Consensus pattern (79 bp):
AGTATTGTGATATATGCTTAAATGTTATAAGATTTATATGTATATTATGATACATGCTTGAGTGT
TAGGTGATTATATA
Found at i:60793507 original size:78 final size:79
Alignment explanation
Indices: 60793348--60793517 Score: 202
Period size: 78 Copynumber: 2.2 Consensus size: 79
60793338 GAGTATTGTG
* *
60793348 ATATATGCTTAAATGTTATAAGATTTATATGTATATTATGATATATGCTTGAGTGTTATGTGATT
1 ATATATGCTTAAATGTTATAAGATTTATATGTATATTATGATACATGCTTGAGTGTTAGGTGATT
***
60793413 ATATAAGTATTGTT
66 ATATAAGTAACATT
** *
60793427 ATATATGCTTAAATGTTATGTGA-TTGTATG-AGTATTATGATACATGCTTG-GATGTTAGGTGA
1 ATATATGCTTAAATGTTATAAGATTTATATGTA-TATTATGATACATGCTTGAG-TGTTAGGTGA
**
60793489 TTATATGTGTAACATT
64 TTATATAAGTAACATT
*
60793505 ATATATGCCTAAA
1 ATATATGCTTAAA
60793518 AGTGAATATG
Statistics
Matches: 78, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
77 2 0.03
78 55 0.71
79 21 0.27
ACGTcount: A:0.32, C:0.05, G:0.18, T:0.45
Consensus pattern (79 bp):
ATATATGCTTAAATGTTATAAGATTTATATGTATATTATGATACATGCTTGAGTGTTAGGTGATT
ATATAAGTAACATT
Found at i:60794196 original size:19 final size:20
Alignment explanation
Indices: 60794163--60794212 Score: 84
Period size: 19 Copynumber: 2.5 Consensus size: 20
60794153 ATAGAGATTT
*
60794163 AGTATCGATACCTTTGCTTG
1 AGTATCGATACCTTTGCTCG
60794183 AGTATCGA-ACCTTTGCTCG
1 AGTATCGATACCTTTGCTCG
60794202 AGTATCGATAC
1 AGTATCGATAC
60794213 TCAGGGTAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
19 18 0.64
20 10 0.36
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (20 bp):
AGTATCGATACCTTTGCTCG
Found at i:60795785 original size:21 final size:21
Alignment explanation
Indices: 60795761--60795802 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
60795751 TCGCTATTTA
*
60795761 CATTAAAAATTATTTTTTATC
1 CATTAAAAATTAATTTTTATC
*
60795782 CATTAACAATTAATTTTTATC
1 CATTAAAAATTAATTTTTATC
60795803 TCATGTTGGC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50
Consensus pattern (21 bp):
CATTAAAAATTAATTTTTATC
Found at i:60795945 original size:94 final size:94
Alignment explanation
Indices: 60795831--60796006 Score: 246
Period size: 94 Copynumber: 1.9 Consensus size: 94
60795821 CCTTCCATGC
* ** **
60795831 TCACACTTACCCTATAAATAAATGTCAATCTTTTTATATATTTTAATT-AAAAGTTAATTTTAAT
1 TCACACTTACCATATAAATAAATGAAAATCTTTAAAT-TATTTTAATTAAAAAGTTAATTTTAAT
*
60795895 CTCACATTGACTTGAGAACAGCCCCATATT
65 CTCACATTGACTAGAGAACAGCCCCATATT
* * * *
60795925 TCACATTTACCATATAAATAAGTGAAAATCTTTAAATTGTTTTCATTAAAAAGTTAATTTTAATC
1 TCACACTTACCATATAAATAAATGAAAATCTTTAAATTATTTTAATTAAAAAGTTAATTTTAATC
60795990 TCACATTGACTAGAGAA
66 TCACATTGACTAGAGAA
60796007 TACTCTCATA
Statistics
Matches: 71, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
93 8 0.11
94 63 0.89
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (94 bp):
TCACACTTACCATATAAATAAATGAAAATCTTTAAATTATTTTAATTAAAAAGTTAATTTTAATC
TCACATTGACTAGAGAACAGCCCCATATT
Found at i:60796023 original size:94 final size:90
Alignment explanation
Indices: 60795688--60796024 Score: 235
Period size: 94 Copynumber: 3.7 Consensus size: 90
60795678 ACTTCTACTA
* * *
60795688 TTTTCATTAAAAAGTTAATTTTAATCACACATTCACTAGAGAATACTCTCATAGCTCACATTTTC
1 TTTTCATTAAAAAGTTAATTTTAATCTCACATTGACTAGAGAATACTCTCATAGCTCACATTTAC
* * *
60795753 GCTAT--TTACATTAAAAAT-TATT-TT
66 -CTATAAATA-AATGAAAATCT-TTATT
* * * ** * * * *
60795777 TTATCCATTAACAA-TTAATTTTTATCTCATGTTGGCT-G-TAATACCCTTCCAT-GCTCACACT
1 TT-TTCATTAAAAAGTTAATTTTAATCTCACATTGACTAGAGAATACTC-T-CATAGCTCACATT
**
60795838 TACCCTATAAATAAATGTCAATCTTTTTATAT
63 TA-CCTATAAATAAATGAAAATC--TTTAT-T
* * * * **
60795870 ATTTTAATT-AAAAGTTAATTTTAATCTCACATTGACTTGAGAACAGC-CCCATATTTCACATTT
1 -TTTTCATTAAAAAGTTAATTTTAATCTCACATTGACTAGAGAATA-CTCTCATAGCTCACATTT
*
60795933 ACCATATAAATAAGTGAAAATCTTTAAATT
64 ACC-TATAAATAAATGAAAATCTTT--ATT
*
60795963 GTTTTCATTAAAAAGTTAATTTTAATCTCACATTGACTAGAGAATACTCTCATAACTCACAT
1 -TTTTCATTAAAAAGTTAATTTTAATCTCACATTGACTAGAGAATACTCTCATAGCTCACAT
60796025 ATCATTATTT
Statistics
Matches: 186, Mismatches: 40, Indels: 39
0.70 0.15 0.15
Matches are distributed among these distances:
87 6 0.03
88 15 0.08
89 28 0.15
90 11 0.06
91 2 0.01
92 8 0.04
93 38 0.20
94 73 0.39
95 4 0.02
96 1 0.01
ACGTcount: A:0.36, C:0.18, G:0.07, T:0.40
Consensus pattern (90 bp):
TTTTCATTAAAAAGTTAATTTTAATCTCACATTGACTAGAGAATACTCTCATAGCTCACATTTAC
CTATAAATAAATGAAAATCTTTATT
Found at i:60796049 original size:69 final size:69
Alignment explanation
Indices: 60795964--60796153 Score: 242
Period size: 69 Copynumber: 2.8 Consensus size: 69
60795954 CTTTAAATTG
60795964 TTTTCATT-AAAAAGTTAATTTTAATCTCACATTGACTAGAGAATACTCTCATAACTCACATA-T
1 TTTTCATTAAAAAAGTTAATTTTAATC-CACATTGACTAGAGAATACTCTCATAACTCACATATT
*
60796027 CATTA
65 CACTA
* * * * *
60796032 TTTTAATTAAAAAAGTTAGTTTTAATCCCACATTGACTAGAGAATACTATAATAACTCACTTATT
1 TTTTCATTAAAAAAGTTAATTTTAAT-CCACATTGACTAGAGAATACTCTCATAACTCACATATT
*
60796097 TACTA
65 CACTA
* * *
60796102 TTTTCATTAAAAAA-TTAATTTGAATCCTACATTGGCTAGAGAACACTCTCAT
1 TTTTCATTAAAAAAGTTAATTTTAATCC-ACATTGACTAGAGAATACTCTCAT
60796154 GCTTATACTT
Statistics
Matches: 104, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
68 9 0.09
69 77 0.74
70 18 0.17
ACGTcount: A:0.38, C:0.16, G:0.07, T:0.38
Consensus pattern (69 bp):
TTTTCATTAAAAAAGTTAATTTTAATCCACATTGACTAGAGAATACTCTCATAACTCACATATTC
ACTA
Found at i:60796548 original size:69 final size:70
Alignment explanation
Indices: 60796374--60796591 Score: 293
Period size: 69 Copynumber: 3.2 Consensus size: 70
60796364 TGTTTTTACG
* * * * *
60796374 ATTTT-AT-CCTACATTGATTAAAGAATACTCTCATAGCTCATTTTTTCACTATTTTTATTAAAA
1 ATTTTAATCCCTACATTGACTAGAGAATACTCTCATAGCTCACTTCTTCACTATTTTCATT-AAA
60796437 AAGTTA
65 AAGTTA
* * *
60796443 ATTGTAA-CCCTACATTGACTAGAAAATACTCTCATAGCTCACTTCTTCAATATTTTCATTAAAA
1 ATTTTAATCCCTACATTGACTAGAGAATACTCTCATAGCTCACTTCTTCACTATTTTCATTAAAA
60796507 AGTTA
66 AGTTA
* * *
60796512 ATTTTAATCCC-ACATTTACTAGAGAATATTCCCATAGCTCACTTCTTCACTATTTTCATTAAAA
1 ATTTTAATCCCTACATTGACTAGAGAATACTCTCATAGCTCACTTCTTCACTATTTTCATTAAAA
60796576 A-TTA
66 AGTTA
60796580 ATTTTAATCCCT
1 ATTTTAATCCCT
60796592 TAAAAAGTTA
Statistics
Matches: 131, Mismatches: 14, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
68 14 0.11
69 68 0.52
70 49 0.37
ACGTcount: A:0.34, C:0.19, G:0.06, T:0.41
Consensus pattern (70 bp):
ATTTTAATCCCTACATTGACTAGAGAATACTCTCATAGCTCACTTCTTCACTATTTTCATTAAAA
AGTTA
Found at i:60796701 original size:93 final size:93
Alignment explanation
Indices: 60796591--60796802 Score: 313
Period size: 93 Copynumber: 2.3 Consensus size: 93
60796581 TTTTAATCCC
*
60796591 TTAAAAAGTTAATTTTTATTCCACATTGGCTAGAATACAATCCCATG-TTCACAAATACCCTATA
1 TTAAAAAGTTAATTTTTATCCCACATTGGCTAGAATACAATCCCATGCTT-ACAAATACCCTATA
* * *
60796655 AATACGTGTCAATTTCTTCTCTATTTTTA
65 AATACGTATCAACTTCTTCTCTATTGTTA
* *
60796684 TTAAAAAGTTAATTTTTATCCCACATTGGCTAGAATACACTCCCATGCTTACACATACCCTATAA
1 TTAAAAAGTTAATTTTTATCCCACATTGGCTAGAATACAATCCCATGCTTACAAATACCCTATAA
* *
60796749 ATACGTATCAGCTTCTTTTCTATTGTTA
66 ATACGTATCAACTTCTTCTCTATTGTTA
60796777 TTAAAAA-TTAA-TTTTAGTCCCACATT
1 TTAAAAAGTTAATTTTTA-TCCCACATT
60796803 AATTACAAAA
Statistics
Matches: 109, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
91 5 0.05
92 13 0.12
93 89 0.82
94 2 0.02
ACGTcount: A:0.33, C:0.20, G:0.08, T:0.39
Consensus pattern (93 bp):
TTAAAAAGTTAATTTTTATCCCACATTGGCTAGAATACAATCCCATGCTTACAAATACCCTATAA
ATACGTATCAACTTCTTCTCTATTGTTA
Found at i:60803217 original size:29 final size:28
Alignment explanation
Indices: 60803184--60803239 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 28
60803174 ATTTTTAGTG
*
60803184 AAAAAATTAA-TTTCTCTCTACAGGAAAAC
1 AAAAAATTAAGTTT-TCTCT-CAAGAAAAC
*
60803213 AAAAACTTAAGTTTTCTCTCAAGAAAA
1 AAAAAATTAAGTTTTCTCTCAAGAAAA
60803240 AAGAAGAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 7 0.29
29 14 0.58
30 3 0.12
ACGTcount: A:0.48, C:0.16, G:0.07, T:0.29
Consensus pattern (28 bp):
AAAAAATTAAGTTTTCTCTCAAGAAAAC
Found at i:60806559 original size:11 final size:11
Alignment explanation
Indices: 60806523--60806578 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
60806513 CATGGTATGT
60806523 ATGATATGCAC
1 ATGATATGCAC
* *
60806534 ATGACATG--T
1 ATGATATGCAC
60806543 ATGATATGCAC
1 ATGATATGCAC
*
60806554 ATGATATG--T
1 ATGATATGCAC
60806563 ATGATATGCAC
1 ATGATATGCAC
60806574 ATGAT
1 ATGAT
60806579 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:60806578 original size:20 final size:20
Alignment explanation
Indices: 60806512--60806578 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
60806502 ATTTTGATAA
*
60806512 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
60806532 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
60806552 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
60806572 ACATGAT
1 ACATGAT
60806579 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:60806655 original size:24 final size:24
Alignment explanation
Indices: 60806628--60806723 Score: 131
Period size: 24 Copynumber: 4.0 Consensus size: 24
60806618 GAGGAAGTGA
60806628 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
60806652 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* * *
60806676 AAAAGGGCTTTTACCCCAGTAATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
60806700 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
60806724 ATGATAAAGC
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
24 53 0.84
25 10 0.16
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:60832882 original size:22 final size:22
Alignment explanation
Indices: 60832856--60832900 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
60832846 TTCTTCTGAG
60832856 ATGTTTTCCTTCTTAGTTATGA
1 ATGTTTTCCTTCTTAGTTATGA
*
60832878 ATGTTTTCCTTTTTAGTTATGA
1 ATGTTTTCCTTCTTAGTTATGA
60832900 A
1 A
60832901 CTAAATCCCC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.20, C:0.11, G:0.13, T:0.56
Consensus pattern (22 bp):
ATGTTTTCCTTCTTAGTTATGA
Found at i:60844816 original size:18 final size:18
Alignment explanation
Indices: 60844795--60844843 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
60844785 TTTACATAAA
60844795 TAACACAATTCACCAAAT
1 TAACACAATTCACCAAAT
* * * *
60844813 TAACATAGTTCGCGAAAT
1 TAACACAATTCACCAAAT
60844831 TAACACAATTCAC
1 TAACACAATTCAC
60844844 ATTATTATAA
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.45, C:0.24, G:0.06, T:0.24
Consensus pattern (18 bp):
TAACACAATTCACCAAAT
Found at i:60856584 original size:130 final size:130
Alignment explanation
Indices: 60856425--60856685 Score: 522
Period size: 130 Copynumber: 2.0 Consensus size: 130
60856415 CATTTTGGTA
60856425 AAAACCACATTTCATTTCCAAATGTTTCTCATTTTTCCATTTCATTTTCATTGATCAATGTTTGT
1 AAAACCACATTTCATTTCCAAATGTTTCTCATTTTTCCATTTCATTTTCATTGATCAATGTTTGT
60856490 CCAATGACCTTTTCATAAGTGTGTTAACCTCGTAGGATATCCTTAATCTCTCTTGGCTAATATTC
66 CCAATGACCTTTTCATAAGTGTGTTAACCTCGTAGGATATCCTTAATCTCTCTTGGCTAATATTC
60856555 AAAACCACATTTCATTTCCAAATGTTTCTCATTTTTCCATTTCATTTTCATTGATCAATGTTTGT
1 AAAACCACATTTCATTTCCAAATGTTTCTCATTTTTCCATTTCATTTTCATTGATCAATGTTTGT
60856620 CCAATGACCTTTTCATAAGTGTGTTAACCTCGTAGGATATCCTTAATCTCTCTTGGCTAATATTC
66 CCAATGACCTTTTCATAAGTGTGTTAACCTCGTAGGATATCCTTAATCTCTCTTGGCTAATATTC
60856685 A
1 A
60856686 TTCTCCCACT
Statistics
Matches: 131, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
130 131 1.00
ACGTcount: A:0.26, C:0.21, G:0.10, T:0.43
Consensus pattern (130 bp):
AAAACCACATTTCATTTCCAAATGTTTCTCATTTTTCCATTTCATTTTCATTGATCAATGTTTGT
CCAATGACCTTTTCATAAGTGTGTTAACCTCGTAGGATATCCTTAATCTCTCTTGGCTAATATTC
Found at i:60860009 original size:40 final size:40
Alignment explanation
Indices: 60859954--60860221 Score: 464
Period size: 40 Copynumber: 6.7 Consensus size: 40
60859944 GAGCATTGGA
*
60859954 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
60859994 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
60860034 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
60860074 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* * *
60860114 ATATGTCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
60860154 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
60860194 ATATATCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
60860222 ATGTGTTTGC
Statistics
Matches: 215, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 215 1.00
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:60868718 original size:37 final size:39
Alignment explanation
Indices: 60868622--60868869 Score: 269
Period size: 39 Copynumber: 6.7 Consensus size: 39
60868612 GATGACATTG
60868622 AATATATCCGGGCTAAGACCGAAGG-AATTATGCGAG-T
1 AATATATCCGGGCTAAGACCGAAGGCAATTATGCGAGTT
*
60868659 --GATAT-C-GGCT-A-A-CGAA-GCAATTATGCGAG-T
1 AATATATCCGGGCTAAGACCGAAGGCAATTATGCGAGTT
60868689 AATATATCC-GGCTAAGACCCG-AGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGA-CCGAAGGCAATTATGCGAGTT
*
60868727 GA-ATATCC-GGCT-AGACCCGAAGGCAATTA-GCGAGTT
1 AATATATCCGGGCTAAGA-CCGAAGGCAATTATGCGAGTT
* * *
60868763 AATATGTCCGGGCTATGACCCGAAGGCAATTATGCGAGAT
1 AATATATCCGGGCTAAGA-CCGAAGGCAATTATGCGAGTT
* *
60868803 GATATATCCGGGCTAAGACCGAAGGCAATTATGCAAGTT
1 AATATATCCGGGCTAAGACCGAAGGCAATTATGCGAGTT
* *
60868842 GATATATCCGGGTTAAGACCGAAGGCAA
1 AATATATCCGGGCTAAGACCGAAGGCAA
60868870 ATGTTTTGCG
Statistics
Matches: 183, Mismatches: 13, Indels: 28
0.82 0.06 0.12
Matches are distributed among these distances:
29 1 0.01
30 16 0.09
31 1 0.01
32 5 0.03
33 9 0.05
34 2 0.01
35 5 0.03
36 16 0.09
37 39 0.21
38 6 0.03
39 62 0.34
40 21 0.11
ACGTcount: A:0.33, C:0.19, G:0.27, T:0.22
Consensus pattern (39 bp):
AATATATCCGGGCTAAGACCGAAGGCAATTATGCGAGTT
Found at i:60889302 original size:40 final size:40
Alignment explanation
Indices: 60889208--60889469 Score: 410
Period size: 40 Copynumber: 6.7 Consensus size: 40
60889198 AGCATTGGAA
60889208 ATATATCC-GGCTAAGACCCGAAGGCAATTATGCGAG-TG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
60889246 A-ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
60889285 ATATATCCGGGCTAAGACCCGAAGGCAA-TATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
60889324 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* * *
60889364 ATATGTCC-GGCTATGACCCGAA-GCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
60889402 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
60889442 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
60889470 ATGTGTTGCG
Statistics
Matches: 205, Mismatches: 13, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
37 6 0.03
38 50 0.24
39 66 0.32
40 83 0.40
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.21
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:60889305 original size:78 final size:79
Alignment explanation
Indices: 60889207--60889469 Score: 417
Period size: 78 Copynumber: 3.4 Consensus size: 79
60889197 GAGCATTGGA
60889207 AATATATCCGGCTAAGACCCGAAGGCAATTATGCGAG-TGA-ATATCCGGGCTAAGACCCGAAGG
1 AATATATCCGGCTAAGACCCGAAGGCAATTATGCGAGATGATATATCCGGGCTAAGACCCGAAGG
60889270 CAATTATGCGAGTT
66 CAATTATGCGAGTT
*
60889284 AATATATCCGGGCTAAGACCCGAAGGCAA-TATGCGAGTTGATATATCCGGGCTAAGACCCGAAG
1 AATATATCC-GGCTAAGACCCGAAGGCAATTATGCGAGATGATATATCCGGGCTAAGACCCGAAG
60889348 GCAATTATGCGAGTT
65 GCAATTATGCGAGTT
* *
60889363 AATATGTCCGGCTATGACCCGAA-GCAATTATGCGAGATGATATATCCGGGCTAAGACCCGAAGG
1 AATATATCCGGCTAAGACCCGAAGGCAATTATGCGAGATGATATATCCGGGCTAAGACCCGAAGG
*
60889427 CAATTATGCAAGTT
66 CAATTATGCGAGTT
* * *
60889441 GATATGTCCGGGTTAAGACCCGAAGGCAA
1 AATATATCC-GGCTAAGACCCGAAGGCAA
60889470 ATGTGTTGCG
Statistics
Matches: 173, Mismatches: 7, Indels: 9
0.92 0.04 0.05
Matches are distributed among these distances:
77 21 0.12
78 91 0.53
79 57 0.33
80 4 0.02
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.21
Consensus pattern (79 bp):
AATATATCCGGCTAAGACCCGAAGGCAATTATGCGAGATGATATATCCGGGCTAAGACCCGAAGG
CAATTATGCGAGTT
Found at i:60889422 original size:117 final size:118
Alignment explanation
Indices: 60889208--60889469 Score: 415
Period size: 117 Copynumber: 2.2 Consensus size: 118
60889198 AGCATTGGAA
60889208 ATATATCC-GGCTAAGACCCGAAGGCAATTATGCGAGTGAATATCCGGGCTAAGACCCGAAGGCA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTGAATATCCGGGCTAAGACCCGAAGGCA
* *
60889272 ATTATGCGAGTTAATATATCCGGGCTAAGACCCGAAGGCAA-TATGCGAGTTG
66 ATTATGCGAGATAATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
* *
60889324 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAATATGTCC-GGCTATGACCCGAA-G
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTGAATA--TCCGGGCTAAGACCCGAAGG
*
60889387 CAATTATGCGAGATGATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
64 CAATTATGCGAGATAATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
* *
60889442 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
60889470 ATGTGTTGCG
Statistics
Matches: 135, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
116 8 0.06
117 75 0.56
118 49 0.36
119 3 0.02
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.21
Consensus pattern (118 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTGAATATCCGGGCTAAGACCCGAAGGCA
ATTATGCGAGATAATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
Found at i:60897795 original size:40 final size:40
Alignment explanation
Indices: 60897740--60898007 Score: 464
Period size: 40 Copynumber: 6.7 Consensus size: 40
60897730 GAGCATTGGA
*
60897740 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
60897780 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
60897820 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
60897860 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* * *
60897900 ATATGTCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
60897940 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
60897980 ATATATCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
60898008 ATGTGTTTGC
Statistics
Matches: 215, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 215 1.00
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:60901568 original size:40 final size:40
Alignment explanation
Indices: 60901508--60901677 Score: 304
Period size: 40 Copynumber: 4.2 Consensus size: 40
60901498 GTAACAACTA
* *
60901508 GCACGAATGCCTTCGAGACTTAACCTGGTTATAATAACCC
1 GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCC
*
60901548 GTACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCC
1 GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCC
60901588 GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCC
1 GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCC
*
60901628 ACACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCC
1 GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCC
60901668 GCACGAATGC
1 GCACGAATGC
60901678 TATGCACATA
Statistics
Matches: 124, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 124 1.00
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (40 bp):
GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCC
Found at i:60910101 original size:40 final size:40
Alignment explanation
Indices: 60910036--60910170 Score: 243
Period size: 40 Copynumber: 3.4 Consensus size: 40
60910026 CGGATGTAAC
* *
60910036 AACCAGCACGAATGCCTTCGAGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
60910076 AACCCGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
60910116 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
60910156 AACCCGCACGAATGC
1 AACCCGCACGAATGC
60910171 TATGCACATA
Statistics
Matches: 91, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 91 1.00
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:60912387 original size:46 final size:46
Alignment explanation
Indices: 60912337--60912510 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 46
60912327 GTTGAGCATC
*
60912337 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGAT
* * * *
60912383 CGAACTCATTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCAT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G-AT
* * *
60912429 CTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCT
1 C-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGAT
*
60912476 CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
60912511 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.58
47 26 0.24
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.30
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGAT
Found at i:60912491 original size:93 final size:93
Alignment explanation
Indices: 60912332--60912502 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
60912322 GGATGGTTGA
* *
60912332 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCTCGAACTCATTGAGT
60912397 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
60912425 GCATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCTCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCTCGAACTCATTGAGT
60912490 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
60912503 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCTCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:60917115 original size:5 final size:5
Alignment explanation
Indices: 60917105--60917138 Score: 59
Period size: 5 Copynumber: 6.6 Consensus size: 5
60917095 CTTTTTGAGA
60917105 AAAAT AAAAT AAAAT AAAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT -AAAAT AAAAT AAAAT AAA
60917139 GAATACACAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 23 0.82
6 5 0.18
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:60917125 original size:16 final size:16
Alignment explanation
Indices: 60917104--60917143 Score: 71
Period size: 16 Copynumber: 2.4 Consensus size: 16
60917094 GCTTTTTGAG
60917104 AAAAATAAAATAAAAT
1 AAAAATAAAATAAAAT
60917120 AAAAATAAAATAAAAT
1 AAAAATAAAATAAAAT
60917136 AAAGAATA
1 AAA-AATA
60917144 CACAAATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 19 0.83
17 4 0.17
ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17
Consensus pattern (16 bp):
AAAAATAAAATAAAAT
Found at i:60919509 original size:27 final size:25
Alignment explanation
Indices: 60919449--60919500 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
60919439 ACACTAAAAG
60919449 TTATTTTAGTTCTCCATTTATTTTT
1 TTATTTTAGTTCTCCATTTATTTTT
60919474 TTATTTTAGTTCTCCATTTATTTTT
1 TTATTTTAGTTCTCCATTTATTTTT
60919499 TT
1 TT
60919501 TTCTTTTAGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.15, C:0.12, G:0.04, T:0.69
Consensus pattern (25 bp):
TTATTTTAGTTCTCCATTTATTTTT
Found at i:60922016 original size:48 final size:48
Alignment explanation
Indices: 60921941--60922036 Score: 156
Period size: 48 Copynumber: 2.0 Consensus size: 48
60921931 GATAATGTGT
* * *
60921941 ATGAGATTAGTATGAGATGGTACAGGTATGTGCATAAACCATATTAGC
1 ATGAGATTAGCACGAGATGGTACAGGTATGCGCATAAACCATATTAGC
*
60921989 ATGAGATTAGCACGAGATGGTATAGGTATGCGCATAAACCATATTAGC
1 ATGAGATTAGCACGAGATGGTACAGGTATGCGCATAAACCATATTAGC
60922037 TTTGTATCGA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.35, C:0.12, G:0.25, T:0.27
Consensus pattern (48 bp):
ATGAGATTAGCACGAGATGGTACAGGTATGCGCATAAACCATATTAGC
Found at i:60923026 original size:12 final size:12
Alignment explanation
Indices: 60923009--60923035 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
60922999 ACAGGTTTGG
60923009 CACGGCCTAGCA
1 CACGGCCTAGCA
60923021 CACGGCCTAGCA
1 CACGGCCTAGCA
60923033 CAC
1 CAC
60923036 AGGCGTGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.26, C:0.44, G:0.22, T:0.07
Consensus pattern (12 bp):
CACGGCCTAGCA
Found at i:60923597 original size:14 final size:11
Alignment explanation
Indices: 60923567--60923591 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
60923557 GAGGAGGGCA
60923567 AGAAAGGTAGT
1 AGAAAGGTAGT
60923578 AGAAAGGTAGT
1 AGAAAGGTAGT
60923589 AGA
1 AGA
60923592 TCAAAGCATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.36, T:0.16
Consensus pattern (11 bp):
AGAAAGGTAGT
Found at i:60936213 original size:43 final size:43
Alignment explanation
Indices: 60936164--60936311 Score: 151
Period size: 43 Copynumber: 3.4 Consensus size: 43
60936154 TATCGAGATG
*
60936164 TGATTACATGTAAGACCATGTCTAGGACATTGGCAGT-GTATTGA
1 TGATTACGTGTAAGACCATGTCTAGGACATTGGCA-TCGTATT-A
* *
60936208 -GATTACGTGTAAGACCATGTTTGGGACATTGGCATCGTATTA
1 TGATTACGTGTAAGACCATGTCTAGGACATTGGCATCGTATTA
* * * * *
60936250 TAATTTCGTGTAAGACCCTGTCTTGGACAATGGCATCG-A-TA
1 TGATTACGTGTAAGACCATGTCTAGGACATTGGCATCGTATTA
*
60936291 TGTATTTACATGTAAGACCAT
1 TG-A-TTACGTGTAAGACCAT
60936312 ATCTGGGATA
Statistics
Matches: 87, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
41 3 0.03
42 4 0.05
43 80 0.92
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (43 bp):
TGATTACGTGTAAGACCATGTCTAGGACATTGGCATCGTATTA
Found at i:60944749 original size:53 final size:54
Alignment explanation
Indices: 60944683--60944821 Score: 185
Period size: 53 Copynumber: 2.6 Consensus size: 54
60944673 TTAAAGCTCT
* *
60944683 ATTTTCAGAGATTGATTAGGATATTTTATAGGATTTTATGACATA-TTTATGGG
1 ATTTTAAGGGATTGATTAGGATATTTTATAGGATTTTATGACATATTTTATGGG
* * * ** *
60944736 ATTTTAATGGATTGATTAGGATATTCTATATGATTTTATGGGATATTTTATGGT
1 ATTTTAAGGGATTGATTAGGATATTTTATAGGATTTTATGACATATTTTATGGG
60944790 ATTTTAAGGGATTGATTAGG--ATTTTATAGGAT
1 ATTTTAAGGGATTGATTAGGATATTTTATAGGAT
60944822 ATTTTAAATT
Statistics
Matches: 74, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
52 10 0.14
53 38 0.51
54 26 0.35
ACGTcount: A:0.29, C:0.02, G:0.22, T:0.47
Consensus pattern (54 bp):
ATTTTAAGGGATTGATTAGGATATTTTATAGGATTTTATGACATATTTTATGGG
Found at i:60944989 original size:28 final size:28
Alignment explanation
Indices: 60944949--60945006 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 28
60944939 ATTTCATGGA
*
60944949 TTGTTAACTTATTTATTCTAGTCAAGGG
1 TTGTTAACTTATTCATTCTAGTCAAGGG
*
60944977 TTGTTAACTTATTCATTCTAGTTAAGGG
1 TTGTTAACTTATTCATTCTAGTCAAGGG
60945005 TT
1 TT
60945007 TTATCAAGGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.24, C:0.10, G:0.17, T:0.48
Consensus pattern (28 bp):
TTGTTAACTTATTCATTCTAGTCAAGGG
Found at i:60948392 original size:27 final size:27
Alignment explanation
Indices: 60948361--60948538 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
60948351 TAAATTGTAC
60948361 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
60948388 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60948414 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
60948442 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
60948470 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60948497 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
60948524 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
60948539 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:60948475 original size:82 final size:81
Alignment explanation
Indices: 60948362--60948517 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
60948352 AAATTGTACA
* *
60948362 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
60948426 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
60948443 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
60948508 TGCGAGTTGA
65 TGCGAATTGA
60948518 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:60948529 original size:82 final size:81
Alignment explanation
Indices: 60948358--60948538 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
60948348 GATTAAATTG
* *
60948358 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
60948423 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
60948439 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
60948503 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
60948521 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
60948539 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:60956475 original size:27 final size:27
Alignment explanation
Indices: 60956444--60956621 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
60956434 TAAATTGTAC
60956444 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
60956471 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60956497 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
60956525 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
60956553 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60956580 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
60956607 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
60956622 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:60956558 original size:82 final size:81
Alignment explanation
Indices: 60956445--60956600 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
60956435 AAATTGTACA
* *
60956445 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
60956509 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
60956526 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
60956591 TGCGAGTTGA
65 TGCGAATTGA
60956601 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:60956612 original size:82 final size:81
Alignment explanation
Indices: 60956441--60956621 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
60956431 GATTAAATTG
* *
60956441 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
60956506 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
60956522 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
60956586 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
60956604 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
60956622 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:60965729 original size:22 final size:22
Alignment explanation
Indices: 60965698--60965769 Score: 60
Period size: 22 Copynumber: 3.3 Consensus size: 22
60965688 TGCCTAGATG
*
60965698 GTATTTTGATAGCCTTTATGGC
1 GTATTCTGATAGCCTTTATGGC
* *
60965720 GTATTCTGATTTGGCCTTTGTGGC
1 GTATTCTGA--TAGCCTTTATGGC
* *
60965744 --ATTTTGTTAGCC-TTATGGC
1 GTATTCTGATAGCCTTTATGGC
60965763 GTATTCT
1 GTATTCT
60965770 AATTTGGCCT
Statistics
Matches: 38, Mismatches: 8, Indels: 9
0.69 0.15 0.16
Matches are distributed among these distances:
19 6 0.16
20 4 0.11
21 4 0.11
22 13 0.34
24 11 0.29
ACGTcount: A:0.14, C:0.15, G:0.24, T:0.47
Consensus pattern (22 bp):
GTATTCTGATAGCCTTTATGGC
Found at i:60965768 original size:43 final size:44
Alignment explanation
Indices: 60965695--60965855 Score: 143
Period size: 43 Copynumber: 3.7 Consensus size: 44
60965685 GCGTGCCTAG
* * *
60965695 ATGGTATTTTGATAGCCTTTATGGCGTATTCTGATTTGGCCTTT
1 ATGGCATTTTGTTAGCCTTTATGGCGTATTCTAATTTGGCCTTT
*
60965739 GTGGCATTTTGTTAGCC-TTATGGCGTATTCTAATTTGGCCTTT
1 ATGGCATTTTGTTAGCCTTTATGGCGTATTCTAATTTGGCCTTT
* * * * * *
60965782 ATGGTATTCTGTTATGGCATTTGTGGC--A-GCTTA-TTGGCCTTT
1 ATGGCATTTTGTTA--GCCTTTATGGCGTATTCTAATTTGGCCTTT
* * * *
60965824 GTGGAATTTTGCTAGCCTTTATGGCATATTCT
1 ATGGCATTTTGTTAGCCTTTATGGCGTATTCT
60965856 GCTTGGCCCT
Statistics
Matches: 93, Mismatches: 18, Indels: 13
0.75 0.15 0.10
Matches are distributed among these distances:
40 9 0.10
42 20 0.22
43 41 0.44
44 15 0.16
45 2 0.02
46 6 0.06
ACGTcount: A:0.16, C:0.15, G:0.24, T:0.46
Consensus pattern (44 bp):
ATGGCATTTTGTTAGCCTTTATGGCGTATTCTAATTTGGCCTTT
Found at i:60965799 original size:22 final size:23
Alignment explanation
Indices: 60965709--60965808 Score: 77
Period size: 22 Copynumber: 4.5 Consensus size: 23
60965699 TATTTTGATA
60965709 GCCTTTATGGCGTATTCTGATTTG
1 GCCTTTATGGCGTATTCTG-TTTG
* * *
60965733 GCCTTTGTGGC--ATTTTG-TTA
1 GCCTTTATGGCGTATTCTGTTTG
*
60965753 GCC-TTATGGCGTATTCTAATTTG
1 GCCTTTATGGCGTATTCT-GTTTG
60965776 GCCTTTAT-G-GTATTCTGTTATG
1 GCCTTTATGGCGTATTCTGTT-TG
* *
60965798 GCATTTGTGGC
1 GCCTTTATGGC
60965809 AGCTTATTGG
Statistics
Matches: 58, Mismatches: 10, Indels: 16
0.69 0.12 0.19
Matches are distributed among these distances:
19 6 0.10
20 5 0.09
21 6 0.10
22 20 0.34
23 7 0.12
24 14 0.24
ACGTcount: A:0.13, C:0.16, G:0.25, T:0.46
Consensus pattern (23 bp):
GCCTTTATGGCGTATTCTGTTTG
Found at i:60967225 original size:25 final size:25
Alignment explanation
Indices: 60967188--60967248 Score: 86
Period size: 25 Copynumber: 2.4 Consensus size: 25
60967178 TTAAGGAGCA
* *
60967188 AAATGATAGTTTCGTTAATAAAGTAG
1 AAATTATA-TTTCGTTAATAAAATAG
60967214 AAATTATATTTCGTTAATAAAATAG
1 AAATTATATTTCGTTAATAAAATAG
*
60967239 AAAATATATT
1 AAATTATATT
60967249 AATGAATGAT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
25 25 0.78
26 7 0.22
ACGTcount: A:0.48, C:0.03, G:0.11, T:0.38
Consensus pattern (25 bp):
AAATTATATTTCGTTAATAAAATAG
Found at i:60974036 original size:55 final size:54
Alignment explanation
Indices: 60973969--60974090 Score: 138
Period size: 55 Copynumber: 2.2 Consensus size: 54
60973959 TATGTAGGCC
* * *
60973969 CACGCTCGTGTTAATTTAATAGGTTCGACCACGAGTACTT-GGCACGGGCGTGTCG
1 CACGCCCGTGTTAATTTAACAAGTTCGACCACG-GT-CTTAGGCACGGGCGTGTCG
* * * *
60974024 CACGCCCGTGTTAATTTGACAAGTTCGGCCATGGTTTTCAGGCACGGGCGTGTCG
1 CACGCCCGTGTTAATTTAACAAGTTCGACCACGGTCTT-AGGCACGGGCGTGTCG
*
60974079 CACGCCTGTGTT
1 CACGCCCGTGTT
60974091 GTTTTCGCAG
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
53 2 0.04
54 2 0.04
55 53 0.93
ACGTcount: A:0.17, C:0.25, G:0.30, T:0.28
Consensus pattern (54 bp):
CACGCCCGTGTTAATTTAACAAGTTCGACCACGGTCTTAGGCACGGGCGTGTCG
Found at i:60977809 original size:12 final size:13
Alignment explanation
Indices: 60977792--60977829 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
60977782 ATCCTGGAAT
60977792 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
60977804 ATTAAGAACACATA
1 ATTAAGAACA-AGA
60977818 ATTAAGAACAAG
1 ATTAAGAACAAG
60977830 CCAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:60991178 original size:30 final size:29
Alignment explanation
Indices: 60991142--60991343 Score: 191
Period size: 30 Copynumber: 6.9 Consensus size: 29
60991132 AAGAAACATT
* * *
60991142 ATCAGAATTGGAACCAAAATGAGAATCAGA
1 ATCAGAATTGTAA-CAGAATCAGAATCAGA
*
60991172 ATCAGAATCAGTAACAGAATCAGAATCAGA
1 ATCAGAAT-TGTAACAGAATCAGAATCAGA
*
60991202 ATCA-ATATTAGTAATAGAATCAGAATCAGA
1 ATCAGA-ATT-GTAACAGAATCAGAATCAGA
* *
60991232 ATCAGAATTAGGTGACAGAATCAGAATCACA
1 ATCAGAATT--GTAACAGAATCAGAATCAGA
*
60991263 ATC---A--GTAACAGAATCATAATCAGA
1 ATCAGAATTGTAACAGAATCAGAATCAGA
*
60991287 ATCAGTATTAGTAACAGAATCAGAATCAGA
1 ATCAGAATT-GTAACAGAATCAGAATCAGA
*
60991317 ATCAGAATTAGGTGACAGAATCAGAAT
1 ATCAGAATT--GTAACAGAATCAGAAT
60991344 GTGAATGCAA
Statistics
Matches: 143, Mismatches: 17, Indels: 23
0.78 0.09 0.13
Matches are distributed among these distances:
24 20 0.14
27 1 0.01
28 1 0.01
29 1 0.01
30 81 0.57
31 39 0.27
ACGTcount: A:0.48, C:0.14, G:0.17, T:0.21
Consensus pattern (29 bp):
ATCAGAATTGTAACAGAATCAGAATCAGA
Found at i:60991266 original size:85 final size:85
Alignment explanation
Indices: 60991163--60991343 Score: 326
Period size: 85 Copynumber: 2.1 Consensus size: 85
60991153 AACCAAAATG
* *
60991163 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAATAGAATCAGAAT
1 AGAATCAGAATCACAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
60991228 CAGAATCAGAATTAGGTGAC
66 CAGAATCAGAATTAGGTGAC
* *
60991248 AGAATCAGAATCACAATCAGTAACAGAATCATAATCAGAATCAGTATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCACAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
60991313 CAGAATCAGAATTAGGTGAC
66 CAGAATCAGAATTAGGTGAC
60991333 AGAATCAGAAT
1 AGAATCAGAAT
60991344 GTGAATGCAA
Statistics
Matches: 92, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.48, C:0.14, G:0.17, T:0.21
Consensus pattern (85 bp):
AGAATCAGAATCACAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
CAGAATCAGAATTAGGTGAC
Found at i:60991343 original size:6 final size:6
Alignment explanation
Indices: 60991163--60991324 Score: 156
Period size: 6 Copynumber: 26.8 Consensus size: 6
60991153 AACCAAAATG
*
60991163 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
60991211 AGTAAT- AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * * *
60991260 ACAATC AGTAA-C AGAATC ATAATC AGAATC AGTATT AGTAA-C AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
60991308 AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAAT
60991325 TAGGTGACAG
Statistics
Matches: 130, Mismatches: 13, Indels: 26
0.77 0.08 0.15
Matches are distributed among these distances:
5 11 0.08
6 108 0.83
7 9 0.07
8 2 0.02
ACGTcount: A:0.49, C:0.14, G:0.16, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:60991747 original size:22 final size:22
Alignment explanation
Indices: 60991699--60991757 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
60991689 GTAAATACGT
*
60991699 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
60991721 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
60991743 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
60991758 CAATAACAGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:60991909 original size:27 final size:26
Alignment explanation
Indices: 60991844--60991925 Score: 92
Period size: 27 Copynumber: 3.1 Consensus size: 26
60991834 ATCATCGGTC
* * *
60991844 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
* *
60991870 ATATAGCTATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
60991897 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
60991924 AA
1 AA
60991926 TGCTTCCTTC
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
26 6 0.13
27 40 0.87
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.21
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:60992155 original size:27 final size:27
Alignment explanation
Indices: 60992125--60992319 Score: 214
Period size: 27 Copynumber: 7.3 Consensus size: 27
60992115 GGGGCAAAAT
* * *
60992125 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
60992152 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
60992179 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
60992206 GATAATTCTACCCTACAGGGGTATTT-
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
60992232 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
60992259 AGTAATTCTACCCTA-TAGAGGTATTTC
1 GGTAATTCTACCCTACAAG-GGTATTTC
*** *
60992286 AAAAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
60992313 AGTAATT
1 GGTAATT
60992320 TCACAATCAA
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
26 24 0.17
27 116 0.82
28 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:60992248 original size:80 final size:80
Alignment explanation
Indices: 60992127--60992311 Score: 246
Period size: 80 Copynumber: 2.3 Consensus size: 80
60992117 GGCAAAATGG
* * * * * * *
60992127 TAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTATAGGGGTATTTCGGTATTTCTACCC
1 TAATTCTACCCTACAGGGGTAT-TTGGTAATTCTACCCTATAAGGGTATTTCAGTAATTCTACCC
*
60992192 TACAAG-GGTATTTCGA
65 TA-AAGAGGTATTTCAA
*
60992208 TAATTCTACCCTACAGGGGTATTTGGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCCT
1 TAATTCTACCCTACAGGGGTATTTGGTAATTCTACCCTATAAGGGTATTTCAGTAATTCTACCCT
*
60992273 ATAGAGGTATTTCAA
66 AAAGAGGTATTTCAA
*
60992288 AAATTCTACCCTACAGGGGTATTT
1 TAATTCTACCCTACAGGGGTATTT
60992312 CAGTAATTTC
Statistics
Matches: 92, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
79 2 0.02
80 71 0.77
81 19 0.21
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (80 bp):
TAATTCTACCCTACAGGGGTATTTGGTAATTCTACCCTATAAGGGTATTTCAGTAATTCTACCCT
AAAGAGGTATTTCAA
Found at i:60992343 original size:107 final size:107
Alignment explanation
Indices: 60992141--60992347 Score: 240
Period size: 107 Copynumber: 1.9 Consensus size: 107
60992131 TTTACCCCAC
* * *** *
60992141 AAGGGTATCTCGGTAATTCTACCCTATAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC
1 AAGGGTATCTCAGTAATTCTACCCTATAGAGGTATTTCAAAAATTCTACCCTACAAGGGTATTTC
** * ***
60992206 GATAATTCTACCCTACAGGGGTATTTGGTAATTCTATCCTAT
66 GATAATTCTACAATACAAGGGTAAACGGTAATTCTATCCTAT
* *
60992248 AAGGGTATTTCAGTAATTCTACCCTATAGAGGTATTTCAAAAATTCTACCCTACAGGGGTATTTC
1 AAGGGTATCTCAGTAATTCTACCCTATAGAGGTATTTCAAAAATTCTACCCTACAAGGGTATTTC
60992313 -AGTAATT-TCACAAT-CAAGGGTAAAACGGTAATTCT
66 GA-TAATTCT-ACAATACAAGGGT-AAACGGTAATTCT
60992348 GTAAATCGAG
Statistics
Matches: 83, Mismatches: 14, Indels: 6
0.81 0.14 0.06
Matches are distributed among these distances:
106 8 0.10
107 75 0.90
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.34
Consensus pattern (107 bp):
AAGGGTATCTCAGTAATTCTACCCTATAGAGGTATTTCAAAAATTCTACCCTACAAGGGTATTTC
GATAATTCTACAATACAAGGGTAAACGGTAATTCTATCCTAT
Found at i:60992344 original size:80 final size:79
Alignment explanation
Indices: 60992178--60992347 Score: 184
Period size: 80 Copynumber: 2.1 Consensus size: 79
60992168 AGGGGTATTT
* * * *
60992178 CGGTATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTGGTAATTCTAT
1 CGGTAATTCTACCCTACAAGGGTATTTCAAAAATTCTACCCTACAGGGGTATTTAGTAATTCTA-
* ***
60992243 CCTATAAGGGTATTT
65 CCAATAAGGGTAAAA
* *
60992258 CAGTAATTCTACCCTA-TAGAGGTATTTCAAAAATTCTACCCTACAGGGGTATTTCAGTAATT-T
1 CGGTAATTCTACCCTACAAG-GGTATTTCAAAAATTCTACCCTACAGGGGTATTT-AGTAATTCT
60992321 -CACAATCAAGGGTAAAA
64 AC-CAAT-AAGGGTAAAA
60992338 CGGTAATTCT
1 CGGTAATTCT
60992348 GTAAATCGAG
Statistics
Matches: 75, Mismatches: 11, Indels: 8
0.80 0.12 0.09
Matches are distributed among these distances:
78 1 0.01
79 5 0.07
80 63 0.84
81 6 0.08
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (79 bp):
CGGTAATTCTACCCTACAAGGGTATTTCAAAAATTCTACCCTACAGGGGTATTTAGTAATTCTAC
CAATAAGGGTAAAA
Found at i:60992695 original size:27 final size:27
Alignment explanation
Indices: 60992324--60992678 Score: 493
Period size: 27 Copynumber: 13.2 Consensus size: 27
60992314 GTAATTTCAC
*
60992324 AATCAAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
60992351 AATCGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
60992378 AA-CTGAGGGTAAAACGGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
**
60992405 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
60992432 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* **
60992459 AATCGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
60992486 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
60992513 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
60992540 AA-CTGAGGGTAAAACGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
60992567 AATCGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* **
60992594 AATTGAGGGTAAAACGGTAATT-TAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
60992620 AATTGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
60992647 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
60992674 AATCG
1 AATCG
60992679 GGAGTACTTT
Statistics
Matches: 290, Mismatches: 31, Indels: 14
0.87 0.09 0.04
Matches are distributed among these distances:
26 26 0.09
27 261 0.90
28 3 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:61008884 original size:30 final size:30
Alignment explanation
Indices: 61008849--61008913 Score: 121
Period size: 30 Copynumber: 2.2 Consensus size: 30
61008839 AACTGACCGA
61008849 GTGTCACACACGGCCTAGACACAAGCCCGT
1 GTGTCACACACGGCCTAGACACAAGCCCGT
*
61008879 GTGTCACACACGGCCTAGACACATGCCCGT
1 GTGTCACACACGGCCTAGACACAAGCCCGT
61008909 GTGTC
1 GTGTC
61008914 TACCTGTGTG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.23, C:0.35, G:0.25, T:0.17
Consensus pattern (30 bp):
GTGTCACACACGGCCTAGACACAAGCCCGT
Found at i:61023414 original size:46 final size:46
Alignment explanation
Indices: 61023361--61023536 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
61023351 TGGTTGAGCA
*
61023361 TCCGAACTCGTTGGGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
61023407 TCTGAACTTGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
61023452 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
61023500 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
61023537 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 60 0.57
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:61023517 original size:93 final size:93
Alignment explanation
Indices: 61023358--61023529 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
61023348 GGATGGTTGA
* * * * *
61023358 GCATCCGAACTCGTTGGGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
61023423 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
61023451 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
61023516 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
61023530 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:61025920 original size:47 final size:47
Alignment explanation
Indices: 61025869--61026232 Score: 604
Period size: 47 Copynumber: 7.7 Consensus size: 47
61025859 TTAGGATTCT
* * *
61025869 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
*
61025916 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
61025963 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
61026010 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
61026057 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
61026104 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
61026151 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
61026198 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
61026233 TCCCGAAGGG
Statistics
Matches: 301, Mismatches: 15, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
46 1 0.00
47 300 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:61026407 original size:37 final size:37
Alignment explanation
Indices: 61026351--61026429 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
61026341 CCGAGCTCTA
* * *
61026351 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
61026388 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
61026425 AAGAC
1 AAGAC
61026430 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:61035025 original size:46 final size:46
Alignment explanation
Indices: 61034900--61035027 Score: 211
Period size: 46 Copynumber: 2.8 Consensus size: 46
61034890 GGTTGAGCAT
* * *
61034900 CCGAACTCGTTGAGTTGAGTCCGAGTTCACATATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
61034946 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *
61034992 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
61035028 GCGGGTTACA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:61041012 original size:46 final size:46
Alignment explanation
Indices: 61040962--61041134 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
61040952 TGGTTGAGCA
*
61040962 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
61041008 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * * *
61041055 TCCGAACTCGTTGAGTTGATTCCGAGTTCATTTATGGATGCGAACA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
61041101 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
61041135 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.58
47 28 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:61041118 original size:93 final size:93
Alignment explanation
Indices: 61040959--61041129 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
61040949 GGATGGTTGA
***
61040959 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCGTTGAGT
61041024 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
61041052 GCATCCGAACTCGTTGAGTTGATTCCGAGTTCATTTATGGATGCGAACACCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCGTTGAGT
61041117 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
61041130 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:61048534 original size:46 final size:46
Alignment explanation
Indices: 61048484--61048652 Score: 173
Period size: 46 Copynumber: 3.7 Consensus size: 46
61048474 TGAGCATCCA
*
61048484 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCG
* * * *
61048530 AACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CGTCCG
* * * * *
61048577 AACTGGTTAAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCG
* *
61048623 AGCTCGTTGAGTTGAGTCCGATTTCACTTA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTA
61048653 GGGGCGGGTT
Statistics
Matches: 98, Mismatches: 18, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 54 0.55
47 27 0.28
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCG
Found at i:61065341 original size:40 final size:40
Alignment explanation
Indices: 61065194--61065377 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
61065184 TCGAATGATG
* * * *
61065194 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
61065234 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
61065273 TTCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
61065312 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
61065353 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
61065378 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
38 22 0.18
39 21 0.17
40 70 0.57
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:61073398 original size:39 final size:40
Alignment explanation
Indices: 61073290--61073474 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 40
61073280 TCGAATGATG
* * *
61073290 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* * *
61073329 ATCCAGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
61073370 TCCGGGCTAAG-CCCGAAGGTATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
61073409 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
61073448 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
61073475 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
39 34 0.28
40 76 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:61073496 original size:79 final size:79
Alignment explanation
Indices: 61073343--61073507 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
61073333 AGACTAAGAT
* * **
61073343 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGTATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
61073408 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
61073422 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
61073485 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
61073501 CCGAAGG
1 CCGAAGG
61073508 TACGTGATTC
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.66
80 23 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:61081566 original size:39 final size:40
Alignment explanation
Indices: 61081466--61081650 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 40
61081456 TCGAATGATG
* * *
61081466 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* * *
61081505 ATCTGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
61081546 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
61081585 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
61081624 AACCAGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
61081651 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
39 35 0.29
40 76 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:61081672 original size:79 final size:79
Alignment explanation
Indices: 61081519--61081683 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
61081509 GGACTAAGAT
* * **
61081519 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCAGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
61081584 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
61081598 CCGAAGGCATTTGTGCGAGTTACT-ATAACCAGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCAGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
61081661 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
61081677 CCGAAGG
1 CCGAAGG
61081684 TACGTGATTC
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 24 0.33
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCAGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:61084989 original size:16 final size:17
Alignment explanation
Indices: 61084968--61085000 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
61084958 GTTGGCTGAA
61084968 GGTTTT-TTTCAAATTT
1 GGTTTTATTTCAAATTT
*
61084984 GGTTTTATTTGAAATTT
1 GGTTTTATTTCAAATTT
61085001 TTTTACAAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.21, C:0.03, G:0.15, T:0.61
Consensus pattern (17 bp):
GGTTTTATTTCAAATTT
Found at i:61099067 original size:94 final size:94
Alignment explanation
Indices: 61098962--61099134 Score: 224
Period size: 94 Copynumber: 1.8 Consensus size: 94
61098952 AAGCTGACGC
** * * *
61098962 CATGTCCCAGACA-GTTCTTACACTAGG-TTGTATATCACGAGGCCAATGCATTTCCCGGACATG
1 CATGTCCCAGACATG-TCTTACACT-GGCTTAAATATCACGAGGCCAATGCATGTACCAGACATG
61099025 TCTTACACTAGCTCTCGTTTCAATGCCGATG
64 TCTTACACTAGCTCTCGTTTCAATGCCGATG
* ***
61099056 CATGTCCCAGACATGTCTTACACTGGCTTAAATATCTCGAGGTTGATGCATGTACCAGACATGTC
1 CATGTCCCAGACATGTCTTACACTGGCTTAAATATCACGAGGCCAATGCATGTACCAGACATGTC
*
61099121 TTACACTGGCTCTC
66 TTACACTAGCTCTC
61099135 ATACTGTGGC
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
93 2 0.03
94 64 0.96
95 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (94 bp):
CATGTCCCAGACATGTCTTACACTGGCTTAAATATCACGAGGCCAATGCATGTACCAGACATGTC
TTACACTAGCTCTCGTTTCAATGCCGATG
Found at i:61099115 original size:48 final size:46
Alignment explanation
Indices: 61099052--61099173 Score: 156
Period size: 48 Copynumber: 2.6 Consensus size: 46
61099042 TTTCAATGCC
*
61099052 GATGCATGTCCCAGACATGTCTTACACTGGCT-TAAATATCTCGAGGTT
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCT-AATA-CT-GAGGCT
* * *
61099100 GATGCATGTACCAGACATGTCTTACACTGGCTCTCATACTGTGGCT
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCTAATACTGAGGCT
* *
61099146 AATGCATGTCCCAGACATGTTTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
61099174 AGAACACATA
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
46 29 0.44
47 2 0.03
48 34 0.52
49 1 0.02
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.31
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTCTAATACTGAGGCT
Found at i:61099171 original size:46 final size:48
Alignment explanation
Indices: 61098962--61099173 Score: 161
Period size: 46 Copynumber: 4.5 Consensus size: 48
61098952 AAGCTGACGC
** * *
61098962 CATGTCCCAGACA-GTTCTTACACTAGG-TTGTATATCACGAGGCCAATG
1 CATGTCCCAGACATG-TCTTACACT-GGCTTAAATATCTCGAGGCTAATG
* * * ** * * **
61099010 CATTTCCCGGACATGTCTTACACTAGCTCT-CGT-T-TCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCT-TAAATATCTCGAGGCTAATG
* *
61099056 CATGTCCCAGACATGTCTTACACTGGCTTAAATATCTCGAGGTTGATG
1 CATGTCCCAGACATGTCTTACACTGGCTTAAATATCTCGAGGCTAATG
* * *
61099104 CATGTACCAGACATGTCTTACACTGGCTCT-CATA-CT-GTGGCTAATG
1 CATGTCCCAGACATGTCTTACACTGGCT-TAAATATCTCGAGGCTAATG
*
61099150 CATGTCCCAGACATGTTTTACACT
1 CATGTCCCAGACATGTCTTACACT
61099174 AGAACACATA
Statistics
Matches: 132, Mismatches: 25, Indels: 16
0.76 0.14 0.09
Matches are distributed among these distances:
45 1 0.01
46 63 0.48
47 5 0.04
48 60 0.45
49 3 0.02
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTGGCTTAAATATCTCGAGGCTAATG
Found at i:61114341 original size:13 final size:13
Alignment explanation
Indices: 61114319--61114351 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
61114309 AAGGATTTGT
61114319 TTAT-TAAACTAA
1 TTATCTAAACTAA
61114331 TTATCTAAACTAA
1 TTATCTAAACTAA
*
61114344 TTAACTAA
1 TTATCTAA
61114352 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:61119266 original size:26 final size:26
Alignment explanation
Indices: 61119230--61119337 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
61119220 TGATACAAAT
61119230 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
61119256 TGATAATGGGTTACGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
61119282 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
61119308 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
61119334 TGAT
1 TGAT
61119338 GGGAATTTCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.31, C:0.07, G:0.26, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:61121036 original size:54 final size:53
Alignment explanation
Indices: 61120954--61121091 Score: 222
Period size: 54 Copynumber: 2.5 Consensus size: 53
61120944 AGGAAGCGTC
61120954 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
61121008 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* * *
61121062 TTGGTGGCTCTGCCACAATATCTGTATCTG
1 CTGGTGGCTATGCCACATTATCTG-ATCTG
61121092 ATGACTTCGT
Statistics
Matches: 79, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
53 7 0.09
54 72 0.91
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:61121090 original size:32 final size:27
Alignment explanation
Indices: 61120954--61121091 Score: 183
Period size: 27 Copynumber: 5.1 Consensus size: 27
61120944 AGGAAGCGTC
*
61120954 CTGGTGGCTATGCCACA-ATTATCTGAT
1 CTGGTGGCTCTGCCACATA-TATCTGAT
*
61120981 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
*
61121008 CTGGTGGCTATGCCACGAT-TATCTGAT
1 CTGGTGGCTCTGCCAC-ATATATCTGAT
*
61121035 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
*
61121062 TTGGTGGCTCTGCCACA-ATATCTGTAT
1 CTGGTGGCTCTGCCACATATATCTG-AT
61121089 CTG
1 CTG
61121092 ATGACTTCGT
Statistics
Matches: 98, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
26 9 0.09
27 86 0.88
28 3 0.03
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCTGAT
Found at i:61126000 original size:292 final size:292
Alignment explanation
Indices: 61125476--61126059 Score: 1098
Period size: 292 Copynumber: 2.0 Consensus size: 292
61125466 ATTGCATTGA
61125476 ATTTGATGTTAATGGACATTTGACGGGAATTGACATTTTAAATGAAATAAATAAGTTTGTATGAA
1 ATTTGATGTTAATGGACATTTGACGGGAATTGACATTTTAAATGAAATAAATAAGTTTGTATGAA
*
61125541 AACTAGATTATATGTTATTTTTGGTTGTATGGACTAATGCCCAAATAAACATGAAAATGTGTTGA
66 AACTAGATGATATGTTATTTTTGGTTGTATGGACTAATGCCCAAATAAACATGAAAATGTGTTGA
61125606 ATTGAATGTACATTGCATGATCATCTATGCATATTGATATACTTGATGAAAAGAGGAAATCTCAG
131 ATTGAATGTACATTGCATGATCATCTATGCATATTGATATACTTGATGAAAAGAGGAAATCTCAG
*
61125671 TTGAATAAAAAGGGATATCCGATGGATAAAGCATTTTTTACATGACATGAGATCCTGCATGTGTT
196 TTAAATAAAAAGGGATATCCGATGGATAAAGCATTTTTTACATGACATGAGATCCTGCATGTGTT
*
61125736 GCAGAAAAGGATTTAGCCCGGACGGGTAATCC
261 GCAGAAAAGGATTTAGCCCAGACGGGTAATCC
61125768 ATTTGATGTTAATGGACATTTGACGGGAATTGACATTTTAAATGAAATAAATAAGTTTGTATGAA
1 ATTTGATGTTAATGGACATTTGACGGGAATTGACATTTTAAATGAAATAAATAAGTTTGTATGAA
*
61125833 AACTAGATGATATGTTATTTTTGTTTGTATGGACTAATGCCCAAATAAACATGAAAATGTGTTGA
66 AACTAGATGATATGTTATTTTTGGTTGTATGGACTAATGCCCAAATAAACATGAAAATGTGTTGA
61125898 ATTGAATGTACATTGCATGATCATCTATGCATATTGATATACTTGATGAAAAGAGGAAATCTC-G
131 ATTGAATGTACATTGCATGATCATCTATGCATATTGATATACTTGATGAAAAGAGGAAATCTCAG
*
61125962 ATTAAATAAAAAGGGATATCCGATGGTTAAAGCATTTTTTACATGACATGAGATCCTGCATGTGT
196 -TTAAATAAAAAGGGATATCCGATGGATAAAGCATTTTTTACATGACATGAGATCCTGCATGTGT
*
61126027 TGCAGAAATGGATTTAGCCCAGACGGGTAATCC
260 TGCAGAAAAGGATTTAGCCCAGACGGGTAATCC
61126060 GTTGATCTCA
Statistics
Matches: 285, Mismatches: 6, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
291 1 0.00
292 284 1.00
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.33
Consensus pattern (292 bp):
ATTTGATGTTAATGGACATTTGACGGGAATTGACATTTTAAATGAAATAAATAAGTTTGTATGAA
AACTAGATGATATGTTATTTTTGGTTGTATGGACTAATGCCCAAATAAACATGAAAATGTGTTGA
ATTGAATGTACATTGCATGATCATCTATGCATATTGATATACTTGATGAAAAGAGGAAATCTCAG
TTAAATAAAAAGGGATATCCGATGGATAAAGCATTTTTTACATGACATGAGATCCTGCATGTGTT
GCAGAAAAGGATTTAGCCCAGACGGGTAATCC
Found at i:61127876 original size:18 final size:16
Alignment explanation
Indices: 61127840--61127871 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
61127830 ATGGATGTTT
61127840 GCATCTAGACTTAATA
1 GCATCTAGACTTAATA
61127856 GCATCTAGACTTAATA
1 GCATCTAGACTTAATA
61127872 TAGCACGAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (16 bp):
GCATCTAGACTTAATA
Found at i:61141438 original size:29 final size:29
Alignment explanation
Indices: 61141396--61141453 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
61141386 CAAAACCTTT
61141396 ACCTGTTTTGCTTATTCCATATGAAAATA
1 ACCTGTTTTGCTTATTCCATATGAAAATA
61141425 ACCTGTTTTGCTTATTCCATATGAAAATA
1 ACCTGTTTTGCTTATTCCATATGAAAATA
61141454 GACACAATGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.17, G:0.10, T:0.41
Consensus pattern (29 bp):
ACCTGTTTTGCTTATTCCATATGAAAATA
Found at i:61142264 original size:46 final size:47
Alignment explanation
Indices: 61142158--61142280 Score: 133
Period size: 46 Copynumber: 2.6 Consensus size: 47
61142148 TGTCTTCGAC
** * *
61142158 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATCTAAT
*
61142208 ATAGG-CTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 AT-GGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
* *
61142254 ATGGACTTACATAGCTCATTTCTGTCT
1 ATGGACTTACATGGCTCATTCCTGTCT
61142281 TGTCCTGTCC
Statistics
Matches: 64, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
45 2 0.03
46 32 0.50
50 28 0.44
51 2 0.03
ACGTcount: A:0.28, C:0.23, G:0.13, T:0.37
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
Found at i:61160613 original size:27 final size:27
Alignment explanation
Indices: 61160541--61160618 Score: 79
Period size: 25 Copynumber: 2.9 Consensus size: 27
61160531 ATGATAATAG
* *
61160541 TATTACAAAGTATATACATAGTATAATGT
1 TATTA-AAA-TATATACATAATATAAAGT
*
61160570 TA--AAAATACATACATAATATAAAGT
1 TATTAAAATATATACATAATATAAAGT
* *
61160595 TATTAAAATATATATATAAGATAA
1 TATTAAAATATATACATAATATAA
61160619 TATGTAAGAA
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
25 18 0.44
26 3 0.07
27 18 0.44
29 2 0.05
ACGTcount: A:0.54, C:0.05, G:0.06, T:0.35
Consensus pattern (27 bp):
TATTAAAATATATACATAATATAAAGT
Found at i:61160717 original size:23 final size:21
Alignment explanation
Indices: 61160682--61160725 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 21
61160672 AATACAACAC
*
61160682 TAAAAAGGTATATACATAATATA
1 TAAAAAGGCATAT--ATAATATA
*
61160705 TAAAAATGCATATATAATATA
1 TAAAAAGGCATATATAATATA
61160726 ATGTTAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 8 0.42
23 11 0.58
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.32
Consensus pattern (21 bp):
TAAAAAGGCATATATAATATA
Found at i:61160893 original size:45 final size:44
Alignment explanation
Indices: 61160811--61160907 Score: 108
Period size: 45 Copynumber: 2.2 Consensus size: 44
61160801 ATGTACCTGT
* * *
61160811 ATATATATATATATATAATACATAATAATATTAAAAATACGTACA
1 ATATATATATACATATAATA-ATAATAATATAAAAAATACATACA
*
61160856 TAGTATATATATACATATAAT-ATAATCAT-TAAGAAAATACATACA
1 -A-TATATATATACATATAATAATAATAATATAA-AAAATACATACA
61160901 ATATATA
1 ATATATA
61160908 GTATTAAGAA
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
43 6 0.13
44 3 0.07
45 18 0.40
46 1 0.02
47 17 0.38
ACGTcount: A:0.55, C:0.07, G:0.03, T:0.35
Consensus pattern (44 bp):
ATATATATATACATATAATAATAATAATATAAAAAATACATACA
Found at i:61160895 original size:26 final size:27
Alignment explanation
Indices: 61160866--61160923 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
61160856 TAGTATATAT
*
61160866 ATACATATAATATA-A-TCATTAAGAAA
1 ATACATACAATATATAGT-ATTAAGAAA
*
61160892 ATACATACAATATATAGTATTAAGAAT
1 ATACATACAATATATAGTATTAAGAAA
61160919 ATACA
1 ATACA
61160924 CAATACGTAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 13 0.46
27 14 0.50
28 1 0.04
ACGTcount: A:0.55, C:0.09, G:0.05, T:0.31
Consensus pattern (27 bp):
ATACATACAATATATAGTATTAAGAAA
Found at i:61160922 original size:27 final size:26
Alignment explanation
Indices: 61160864--61160923 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
61160854 CATAGTATAT
*
61160864 ATATACATATAATATAATCATTAAGA
1 ATATACATACAATATAATCATTAAGA
*
61160890 AAATACATACAATATATAGT-ATTAAGA
1 ATATACATACAATATA-A-TCATTAAGA
61160917 ATATACA
1 ATATACA
61160924 CAATACGTAG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
26 14 0.48
27 14 0.48
28 1 0.03
ACGTcount: A:0.55, C:0.08, G:0.05, T:0.32
Consensus pattern (26 bp):
ATATACATACAATATAATCATTAAGA
Found at i:61164797 original size:24 final size:29
Alignment explanation
Indices: 61164746--61164801 Score: 77
Period size: 24 Copynumber: 2.1 Consensus size: 29
61164736 TGGATGTCCT
61164746 AATTAAATTAACAACTAATATGCAAATGA
1 AATTAAATTAACAACTAATATGCAAATGA
61164775 AATTAAA-TAA-AA-TAA-ATGC-AATGA
1 AATTAAATTAACAACTAATATGCAAATGA
61164799 AAT
1 AAT
61164802 GTTTTAGCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
24 8 0.30
25 4 0.15
26 3 0.11
27 2 0.07
28 3 0.11
29 7 0.26
ACGTcount: A:0.59, C:0.07, G:0.07, T:0.27
Consensus pattern (29 bp):
AATTAAATTAACAACTAATATGCAAATGA
Found at i:61165139 original size:56 final size:56
Alignment explanation
Indices: 61165053--61165166 Score: 201
Period size: 56 Copynumber: 2.0 Consensus size: 56
61165043 TGCAAAGTAA
*
61165053 CAGGGACGGGTTAGGTTTGAAACAACTTAATTACATAAATCTAATGTTATCCAAGG
1 CAGGGACGGGTTAGGTTTAAAACAACTTAATTACATAAATCTAATGTTATCCAAGG
* *
61165109 CAGGGACTGGTTAGGTTTAAAACAATTTAATTACATAAATCTAATGTTATCCAAGG
1 CAGGGACGGGTTAGGTTTAAAACAACTTAATTACATAAATCTAATGTTATCCAAGG
61165165 CA
1 CA
61165167 ATAGTGTTCT
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (56 bp):
CAGGGACGGGTTAGGTTTAAAACAACTTAATTACATAAATCTAATGTTATCCAAGG
Found at i:61166269 original size:56 final size:56
Alignment explanation
Indices: 61166202--61166311 Score: 211
Period size: 56 Copynumber: 2.0 Consensus size: 56
61166192 CTATTTGTAT
61166202 TTTTATAGAAGGATCATGATTAAAGTTTACTATGATTATTGTTGAAATTCCTGATC
1 TTTTATAGAAGGATCATGATTAAAGTTTACTATGATTATTGTTGAAATTCCTGATC
*
61166258 TTTTATAGAAGGATCGTGATTAAAGTTTACTATGATTATTGTTGAAATTCCTGA
1 TTTTATAGAAGGATCATGATTAAAGTTTACTATGATTATTGTTGAAATTCCTGA
61166312 AAAGATCAAA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 53 1.00
ACGTcount: A:0.32, C:0.08, G:0.17, T:0.43
Consensus pattern (56 bp):
TTTTATAGAAGGATCATGATTAAAGTTTACTATGATTATTGTTGAAATTCCTGATC
Found at i:61171859 original size:21 final size:21
Alignment explanation
Indices: 61171824--61171880 Score: 89
Period size: 21 Copynumber: 2.8 Consensus size: 21
61171814 TACTTGAAGC
*
61171824 AGGGC-ACACGTCCGTATGGA
1 AGGGCAACACGCCCGTATGGA
61171844 AGGGCAACACGCCCGTATGGA
1 AGGGCAACACGCCCGTATGGA
*
61171865 AGGGCAACACCCCCGT
1 AGGGCAACACGCCCGT
61171881 GTGGTCATTA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
20 5 0.15
21 29 0.85
ACGTcount: A:0.26, C:0.32, G:0.32, T:0.11
Consensus pattern (21 bp):
AGGGCAACACGCCCGTATGGA
Found at i:61173122 original size:49 final size:49
Alignment explanation
Indices: 61173017--61173148 Score: 169
Period size: 49 Copynumber: 2.7 Consensus size: 49
61173007 GGGTTAAGAT
* *
61173017 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTTCATATAATGAG
1 GCCGATGCCATGTCCCAGACA-GGTCTTACATTGGCTCTCATATAATGAG
* * *
61173067 GCCGATGCCATGTCCTAGATAGGTCTTACATTGGCTCTCAT-TTATCG-G
1 GCCGATGCCATGTCCCAGACAGGTCTTACATTGGCTCTCATATAAT-GAG
*
61173115 TGTCGATGCCATGTCCCAGACAGGTCTTACATTG
1 -GCCGATGCCATGTCCCAGACAGGTCTTACATTG
61173149 ACACACAACA
Statistics
Matches: 72, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
48 4 0.06
49 49 0.68
50 19 0.26
ACGTcount: A:0.21, C:0.26, G:0.23, T:0.30
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACAGGTCTTACATTGGCTCTCATATAATGAG
Found at i:61176679 original size:22 final size:21
Alignment explanation
Indices: 61176654--61176749 Score: 97
Period size: 20 Copynumber: 4.6 Consensus size: 21
61176644 AAGTTAACAG
*
61176654 AATGCCACAAATGCCATATTAA
1 AATGCCACAAA-GCCATATCAA
* ** *
61176676 AATGTCACAAAG-GTTAACAA
1 AATGCCACAAAGCCATATCAA
61176696 AATGCCACAAAAGCCATATCAA
1 AATGCCAC-AAAGCCATATCAA
* *
61176718 AATGCCACAAAGAC-TAACAA
1 AATGCCACAAAGCCATATCAA
61176738 AATGCCACAAAG
1 AATGCCACAAAG
61176750 GCTAACAAGA
Statistics
Matches: 61, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
20 28 0.46
21 10 0.16
22 23 0.38
ACGTcount: A:0.50, C:0.23, G:0.11, T:0.16
Consensus pattern (21 bp):
AATGCCACAAAGCCATATCAA
Found at i:61176699 original size:20 final size:20
Alignment explanation
Indices: 61176674--61176762 Score: 106
Period size: 20 Copynumber: 4.3 Consensus size: 20
61176664 ATGCCATATT
* *
61176674 AAAATGTCACAAAGGTTAAC
1 AAAATGCCACAAAGGCTAAC
* *
61176694 AAAATGCCACAAAAGCCATATC
1 AAAATGCCAC-AAAGGC-TAAC
*
61176716 AAAATGCCACAAAGACTAAC
1 AAAATGCCACAAAGGCTAAC
61176736 AAAATGCCACAAAGGCTAAC
1 AAAATGCCACAAAGGCTAAC
*
61176756 AAGATGC
1 AAAATGC
61176763 GCCATAAAGG
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
20 37 0.63
21 9 0.15
22 13 0.22
ACGTcount: A:0.51, C:0.22, G:0.13, T:0.13
Consensus pattern (20 bp):
AAAATGCCACAAAGGCTAAC
Found at i:61176705 original size:42 final size:42
Alignment explanation
Indices: 61176646--61176748 Score: 152
Period size: 42 Copynumber: 2.5 Consensus size: 42
61176636 TATCCAAAAA
* * * *
61176646 GTTAACAGAATGCCACAAATGCCATATTAAAATGTCACAAAG
1 GTTAACAAAATGCCACAAAAGCCATATCAAAATGCCACAAAG
61176688 GTTAACAAAATGCCACAAAAGCCATATCAAAATGCCACAAAG
1 GTTAACAAAATGCCACAAAAGCCATATCAAAATGCCACAAAG
**
61176730 ACTAACAAAATGCCACAAA
1 GTTAACAAAATGCCACAAA
61176749 GGCTAACAAG
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 55 1.00
ACGTcount: A:0.50, C:0.22, G:0.12, T:0.17
Consensus pattern (42 bp):
GTTAACAAAATGCCACAAAAGCCATATCAAAATGCCACAAAG
Found at i:61183343 original size:12 final size:12
Alignment explanation
Indices: 61183326--61183350 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
61183316 TATGTATACA
61183326 TGTTTGTTTTTT
1 TGTTTGTTTTTT
61183338 TGTTTGTTTTTT
1 TGTTTGTTTTTT
61183350 T
1 T
61183351 TTAAGAATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.00, G:0.16, T:0.84
Consensus pattern (12 bp):
TGTTTGTTTTTT
Found at i:61190818 original size:24 final size:24
Alignment explanation
Indices: 61190791--61190837 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
61190781 TACTTTGGCC
*
61190791 CGTTTCTCGTTCCTTTTGCTCTCT
1 CGTTTCTCATTCCTTTTGCTCTCT
61190815 CGTTTCTCATTCCTTTTGCTCTC
1 CGTTTCTCATTCCTTTTGCTCTC
61190838 CTATGCTCTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.02, C:0.34, G:0.11, T:0.53
Consensus pattern (24 bp):
CGTTTCTCATTCCTTTTGCTCTCT
Found at i:61193459 original size:43 final size:42
Alignment explanation
Indices: 61193375--61193543 Score: 130
Period size: 43 Copynumber: 4.0 Consensus size: 42
61193365 TCTGAGACAT
* * * *
61193375 CGTGTAAGACCATGTCTGGGACACAGGCCTCGGT-TGAGATTTA
1 CGTGTAAGACTATGTCTGGGACATAGGCATC-GTAT-TGATTTA
*
61193418 CGTGTAAGACTATGTCTGGGACATTGGCATCGTATCTGATTT-
1 CGTGTAAGACTATGTCTGGGACATAGGCATCGTAT-TGATTTA
* * *
61193460 TGTGTAAGACCT-TGTCTGGGACAGAGGCATCGATATTGAATTA
1 CGTGTAAGA-CTATGTCTGGGACATAGGCATCG-TATTGATTTA
* * * * *
61193503 CATGTAAGA-TCACGTCTGGGACGTTGGCATTGTACTTGATT
1 CGTGTAAGACT-ATGTCTGGGACATAGGCATCGTA-TTGATT
61193544 ATGAGCATCT
Statistics
Matches: 101, Mismatches: 18, Indels: 14
0.76 0.14 0.11
Matches are distributed among these distances:
41 1 0.01
42 35 0.35
43 65 0.64
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (42 bp):
CGTGTAAGACTATGTCTGGGACATAGGCATCGTATTGATTTA
Found at i:61193543 original size:85 final size:85
Alignment explanation
Indices: 61193376--61193532 Score: 203
Period size: 85 Copynumber: 1.8 Consensus size: 85
61193366 CTGAGACATC
* * * *
61193376 GTGTAAGACCATGTCTGGGACACAGGCCTCGGTTGAGATTTACGTGTAAGACTATGTCTGGGACA
1 GTGTAAGACCATGTCTGGGACACAGGCATCGATTGAGATTTACATGTAAGACTACGTCTGGGACA
61193441 TTGGCATCGTATCTGATTTT
66 TTGGCATCGTATCTGATTTT
* *
61193461 GTGTAAGACCTTGTCTGGGACAGAGGCATCGATATTGA-A-TTACATGTAAGA-TCACGTCTGGG
1 GTGTAAGACCATGTCTGGGACACAGGCATCG--ATTGAGATTTACATGTAAGACT-ACGTCTGGG
*
61193523 ACGTTGGCAT
63 ACATTGGCAT
61193533 TGTACTTGAT
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
84 1 0.02
85 56 0.90
86 1 0.02
87 4 0.06
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30
Consensus pattern (85 bp):
GTGTAAGACCATGTCTGGGACACAGGCATCGATTGAGATTTACATGTAAGACTACGTCTGGGACA
TTGGCATCGTATCTGATTTT
Found at i:61202946 original size:40 final size:40
Alignment explanation
Indices: 61202902--61203086 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
61202892 GCTACACGTT
* *
61202902 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
61202942 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
61202982 CCAATGCCTTCGGG-CTTAGCCC-GAAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
61203021 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
61203062 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
61203087 CATCATTCGA
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
38 4 0.03
39 29 0.23
40 77 0.62
41 14 0.11
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:61203002 original size:79 final size:81
Alignment explanation
Indices: 61202904--61203086 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
61202894 TACACGTTCA
* **
61202904 AATGCCTTCGGGACATAGCCCGGTTA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
61202967 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
61202984 AATGCCTTCGGG-CTTAGCCC-GAAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
61203047 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
61203063 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
61203087 CATCATTCGA
Statistics
Matches: 88, Mismatches: 10, Indels: 9
0.82 0.09 0.08
Matches are distributed among these distances:
78 5 0.06
79 57 0.65
80 24 0.27
81 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:61211194 original size:39 final size:40
Alignment explanation
Indices: 61211080--61211264 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
61211070 GCTACTCGTT
* *
61211080 CAAATGCCTTCGGGACATAGCCCAG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
61211120 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
61211160 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
61211199 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
61211240 CAAA-GCCTTCGAGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
61211265 CATCATTCGA
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.26
40 78 0.62
41 12 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:61211248 original size:79 final size:80
Alignment explanation
Indices: 61211108--61211264 Score: 203
Period size: 79 Copynumber: 2.0 Consensus size: 80
61211098 AGCCCAGTTA
* * *
61211108 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCG-
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCACCAAAGCCTTCGA
*
61211172 GGCTTAGCCCGGAAT
66 GACTTAGCCCGGAAT
** * *
61211187 TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA-CAAAGCCTTC
1 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAGTAAC-TAGCACCAAAGCCTTC
61211250 GAGACTTAGCCCGGA
64 GAGACTTAGCCCGGA
61211265 CATCATTCGA
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
78 3 0.04
79 48 0.72
80 16 0.24
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCACCAAAGCCTTCGA
GACTTAGCCCGGAAT
Found at i:61223591 original size:13 final size:13
Alignment explanation
Indices: 61223559--61223596 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
61223549 TTGGCATGCC
*
61223559 ATAGGATTTTGAG
1 ATAGGATTTGGAG
61223572 A-AGGGATTTGGAG
1 ATA-GGATTTGGAG
61223585 ATAGGATTTGGA
1 ATAGGATTTGGA
61223597 TATGCTGATG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
12 1 0.05
13 20 0.91
14 1 0.05
ACGTcount: A:0.32, C:0.00, G:0.37, T:0.32
Consensus pattern (13 bp):
ATAGGATTTGGAG
Found at i:61223699 original size:23 final size:23
Alignment explanation
Indices: 61223673--61223740 Score: 73
Period size: 28 Copynumber: 2.7 Consensus size: 23
61223663 GATGGATTAT
61223673 ATTATTCTGGTGTGTTTGGGAGG
1 ATTATTCTGGTGTGTTTGGGAGG
*
61223696 ATTATATGATACTGGTGTGTTTTGGAGG
1 A-T-TAT--T-CTGGTGTGTTTGGGAGG
*
61223724 ATTATACTGGTGTGTTT
1 ATTATTCTGGTGTGTTT
61223741 TGGTTGGACA
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
23 12 0.32
24 1 0.03
25 3 0.08
26 3 0.08
27 2 0.05
28 17 0.45
ACGTcount: A:0.18, C:0.04, G:0.32, T:0.46
Consensus pattern (23 bp):
ATTATTCTGGTGTGTTTGGGAGG
Found at i:61223699 original size:28 final size:28
Alignment explanation
Indices: 61223646--61223729 Score: 123
Period size: 28 Copynumber: 3.0 Consensus size: 28
61223636 CACTTTGTGC
*
61223646 TATTCTAGTGTGTTTTGGATGGATTATAT
1 TATTCTGGTGTGTTTTGGA-GGATTATAT
*
61223675 TATTCTGGTGTGTTTGGGAGGATTATAT
1 TATTCTGGTGTGTTTTGGAGGATTATAT
* *
61223703 GATACTGGTGTGTTTTGGAGGATTATA
1 TATTCTGGTGTGTTTTGGAGGATTATA
61223730 CTGGTGTGTT
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
28 33 0.66
29 17 0.34
ACGTcount: A:0.20, C:0.04, G:0.30, T:0.46
Consensus pattern (28 bp):
TATTCTGGTGTGTTTTGGAGGATTATAT
Found at i:61224003 original size:21 final size:21
Alignment explanation
Indices: 61223946--61224006 Score: 68
Period size: 21 Copynumber: 2.8 Consensus size: 21
61223936 AGGTACTTTA
*
61223946 TGTGTCGTATTTCAGGCACCTTG
1 TGTGTCG--TTTCAGGCACCTCG
***
61223969 TGTGTCGCAGCAGGCACCTCG
1 TGTGTCGTTTCAGGCACCTCG
61223990 TGTGTCGTTTCAGGCAC
1 TGTGTCGTTTCAGGCAC
61224007 TTATGTGTCG
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
21 24 0.77
23 7 0.23
ACGTcount: A:0.13, C:0.26, G:0.30, T:0.31
Consensus pattern (21 bp):
TGTGTCGTTTCAGGCACCTCG
Found at i:61232708 original size:38 final size:38
Alignment explanation
Indices: 61232578--61232706 Score: 186
Period size: 38 Copynumber: 3.4 Consensus size: 38
61232568 CGCAGACATA
*
61232578 TGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTCG
1 TGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCG
* * * *
61232616 TGCTAGTAATATATCCGGGTTAAATCCTGTAGGCTTCG
1 TGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCG
* * *
61232654 TGCTGGTATTATATCTGGGTTAAATCCCGCAGGCCTAG
1 TGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCG
61232692 TGCTGGTATTATATC
1 TGCTGGTATTATATC
61232707 TGAGCTTAAA
Statistics
Matches: 79, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 79 1.00
ACGTcount: A:0.22, C:0.20, G:0.25, T:0.33
Consensus pattern (38 bp):
TGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCG
Found at i:61232738 original size:40 final size:38
Alignment explanation
Indices: 61232556--61232716 Score: 144
Period size: 38 Copynumber: 4.2 Consensus size: 38
61232546 CGTGTATCCG
* * * * *
61232556 GGCTTAAAGACCCGCAGACATA-TGCTGGAATTATATCC
1 GGCTTAAA-TCCCGCAGGCCTAGTGCTGGTATTATATCT
* * * * * *
61232594 GGGTTAAATCCCGCAGGCTTCGTGCTAGTAATATATCC
1 GGCTTAAATCCCGCAGGCCTAGTGCTGGTATTATATCT
* * * * *
61232632 GGGTTAAATCCTGTAGGCTTCGTGCTGGTATTATATCT
1 GGCTTAAATCCCGCAGGCCTAGTGCTGGTATTATATCT
*
61232670 GGGTTAAATCCCGCAGGCCTAGTGCTGGTATTATATCT
1 GGCTTAAATCCCGCAGGCCTAGTGCTGGTATTATATCT
61232708 GAGCTTAAA
1 G-GCTTAAA
61232717 GTCTGGCAGG
Statistics
Matches: 103, Mismatches: 18, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
37 9 0.09
38 88 0.85
39 6 0.06
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.30
Consensus pattern (38 bp):
GGCTTAAATCCCGCAGGCCTAGTGCTGGTATTATATCT
Found at i:61240689 original size:38 final size:38
Alignment explanation
Indices: 61240657--61240785 Score: 170
Period size: 38 Copynumber: 3.4 Consensus size: 38
61240647 GCAGGCTATA
61240657 TGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTCG
1 TGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTCG
* * *
61240695 TGCTAGTAA-TATATCTGGGTTAAATCCTGCAGGCTTCG
1 TGCT-GGAATTATATCCGGGTTAAATCCCGCAGGCTTCG
* * * *
61240733 TGCTGGTATTATATCCGGGTTAAATCCCACAGGCCTAG
1 TGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTCG
*
61240771 TGCTGGTATTATATC
1 TGCTGGAATTATATC
61240786 TGAGCTTAAA
Statistics
Matches: 79, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
37 2 0.03
38 74 0.94
39 3 0.04
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.33
Consensus pattern (38 bp):
TGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTCG
Found at i:61240774 original size:76 final size:76
Alignment explanation
Indices: 61240644--61240787 Score: 209
Period size: 76 Copynumber: 1.9 Consensus size: 76
61240634 GGCTTAAAGA
* * *
61240644 CCTGCAGGCTATATGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTCGTGCTAGTAATATAT
1 CCTGCAGGCTATATGCTGGAATTATATCCGGGTTAAATCCCACAGGCCTAGTGCTAGTAATATAT
61240709 CTGGGTTAAAT
66 CTGGGTTAAAT
* * * *
61240720 CCTGCAGGCT-TCGTGCTGGTATTATATCCGGGTTAAATCCCACAGGCCTAGTGCTGGTATTATA
1 CCTGCAGGCTAT-ATGCTGGAATTATATCCGGGTTAAATCCCACAGGCCTAGTGCTAGTAATATA
61240784 TCTG
65 TCTG
61240788 AGCTTAAAGT
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
75 1 0.02
76 59 0.98
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.32
Consensus pattern (76 bp):
CCTGCAGGCTATATGCTGGAATTATATCCGGGTTAAATCCCACAGGCCTAGTGCTAGTAATATAT
CTGGGTTAAAT
Found at i:61255374 original size:40 final size:40
Alignment explanation
Indices: 61255265--61255569 Score: 544
Period size: 40 Copynumber: 7.7 Consensus size: 40
61255255 GAGCATTGGA
61255265 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
61255305 ATATATCCGGGCT-AGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
61255344 ATATATCCGGGCTAGGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
61255384 ATATATCC-GGCTAAGA-CCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
61255422 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
61255462 ATATATCCGGGCTAGGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
61255502 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
61255542 ATATGTTCGGGCTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
61255570 ATGTGTTTGC
Statistics
Matches: 255, Mismatches: 7, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
38 30 0.12
39 53 0.21
40 172 0.67
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:61255482 original size:118 final size:119
Alignment explanation
Indices: 61255265--61255569 Score: 560
Period size: 118 Copynumber: 2.6 Consensus size: 119
61255255 GAGCATTGGA
61255265 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAGACCCGAAGGC
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAGACCCGAAGGC
61255330 AATTATGCGAGTTGATATATCCGGGCTAGGACCCGAAGGCAATTATGCGAGTTG
66 AATTATGCGAGTTGATATATCCGGGCTAGGACCCGAAGGCAATTATGCGAGTTG
61255384 ATATATCC-GGCTAAGA-CCGAAGGCAATTATGCGAGTTGATATATCCGGGCTATGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTA-GACCCGAAGG
61255447 CAATTATGCGAGTTGATATATCCGGGCTAGGACCCGAAGGCAATTATGCGAGTTG
65 CAATTATGCGAGTTGATATATCCGGGCTAGGACCCGAAGGCAATTATGCGAGTTG
* *
61255502 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATGTTCGGGCTAAGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCT-AGACCCGAAGG
61255567 CAA
65 CAA
61255570 ATGTGTTTGC
Statistics
Matches: 180, Mismatches: 2, Indels: 7
0.95 0.01 0.04
Matches are distributed among these distances:
117 36 0.20
118 81 0.45
119 16 0.09
120 46 0.26
121 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (119 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAGACCCGAAGGC
AATTATGCGAGTTGATATATCCGGGCTAGGACCCGAAGGCAATTATGCGAGTTG
Found at i:61263943 original size:40 final size:40
Alignment explanation
Indices: 61263884--61264191 Score: 562
Period size: 40 Copynumber: 7.7 Consensus size: 40
61263874 GAGCATTGGA
61263884 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
61263924 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
61263964 ATATATCCGGGCTAGGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
61264004 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
61264044 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
61264084 ATATATCCGGGCTAGGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
61264124 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
61264164 ATATGTTCGGGCTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
61264192 ATGTGTTTGC
Statistics
Matches: 260, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 260 1.00
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:61267773 original size:14 final size:14
Alignment explanation
Indices: 61267754--61267786 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
61267744 CGCTAAGGAA
61267754 TTCAATTCCTGCTT
1 TTCAATTCCTGCTT
*
61267768 TTCAATTTCTGCTT
1 TTCAATTCCTGCTT
61267782 TTCAA
1 TTCAA
61267787 AAAAATCGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.18, C:0.24, G:0.06, T:0.52
Consensus pattern (14 bp):
TTCAATTCCTGCTT
Found at i:61267884 original size:95 final size:93
Alignment explanation
Indices: 61267766--61267953 Score: 259
Period size: 93 Copynumber: 2.0 Consensus size: 93
61267756 CAATTCCTGC
* * *
61267766 TTTTCAATTTCTGCTTTTCAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCA
1 TTTTCAATTTCTACTTTTC--AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGCTCA
* * *
61267831 CATGCTGAGGTATTTTCAGTTTCTGTTTTT
64 CATGCTGAGCTATTTTCAATTTCTATTTTT
* * * * *
61267861 TTTTCAATTTTTATTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCTTTGGCTCACG
1 TTTTCAATTTCTACTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGCTCACA
61267926 TGCTGAGCTATTTTCAATTTCTATTTTT
66 TGCTGAGCTATTTTCAATTTCTATTTTT
61267954 ACTGTCTGTT
Statistics
Matches: 82, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
93 66 0.80
95 16 0.20
ACGTcount: A:0.23, C:0.16, G:0.18, T:0.43
Consensus pattern (93 bp):
TTTTCAATTTCTACTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGCTCACA
TGCTGAGCTATTTTCAATTTCTATTTTT
Found at i:61268025 original size:87 final size:87
Alignment explanation
Indices: 61267795--61268176 Score: 296
Period size: 87 Copynumber: 4.3 Consensus size: 87
61267785 AAAAAAATCG
* * * * * *
61267795 ACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTATTTTCAGTTTCTGTTTT
1 ACTCATATTGCGAGAGATGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATTTC----TA
* * *
61267860 TTTTTCAATTTTTAT-TTTTCAAA-AATCA
62 TTTTT-AA--TGTATGTTTT-AAAGGACCA
*
61267888 ACTCATATTGCGAGAGATGAGTTGAGCTTTGGCTCACGTGCTGAGCTATTTTCAATTTCTATTTT
1 ACTCATATTGCGAGAGATGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATTTCTATTTT
* *
61267953 TACTGTCTGTTTTAAAGGACCA
66 TAATGTATGTTTTAAAGGACCA
* * * *
61267975 ACTCATATTGCGAGAGGTGAGTTGAGCCTCTGG-TCACATGAC-GAGGTATTTTCGAA-ATCTAC
1 ACTCATATTGCGAGAGATGAGTTGAGCCT-TGGCTCACGTG-CTGAGCTATTTTC-AATTTCTA-
* * *
61268037 TTTTCAAAT-TAAGTTTCAAAAGGACCA
62 TTTT-TAATGTATGTTT-TAAAGGACCA
* * * *
61268064 A-TCCATATTGCGAGAGTTGAGTTGAGCCTTGGCTCACGTGCTAAGCTATTTTTAATTTCT-GTT
1 ACT-CATATTGCGAGAGATGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATTTCTATTT
* *
61268127 TTAATGTTTGTTTTAAA-GAGTCA
65 TTAATGTATGTTTTAAAGGA-CCA
* * * *
61268150 ATTCAGATTGCAAGAAATGAGTTGAGC
1 ACTCATATTGCGAGAGATGAGTTGAGC
61268177 TCAGGATCAC
Statistics
Matches: 236, Mismatches: 38, Indels: 37
0.76 0.12 0.12
Matches are distributed among these distances:
85 2 0.01
86 35 0.15
87 63 0.27
88 23 0.10
89 60 0.25
93 53 0.22
ACGTcount: A:0.26, C:0.16, G:0.21, T:0.38
Consensus pattern (87 bp):
ACTCATATTGCGAGAGATGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATTTCTATTTT
TAATGTATGTTTTAAAGGACCA
Done.