Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 192 of 255
Found at i:63847082 original size:18 final size:18
Alignment explanation
Indices: 63847059--63847192 Score: 169
Period size: 18 Copynumber: 7.4 Consensus size: 18
63847049 TAAATAAAGG
* *
63847059 TACTGAATAACTGATTGC
1 TACTGAATAACTGACTGT
* *
63847077 TACTGAATAATTAACTGT
1 TACTGAATAACTGACTGT
63847095 TACTGAATAACTGACTGT
1 TACTGAATAACTGACTGT
*
63847113 TACTGAATAATTGACTGT
1 TACTGAATAACTGACTGT
*
63847131 TACTGAATAACCGACTGT
1 TACTGAATAACTGACTGT
* *
63847149 TATTGAATAACCGACTGT
1 TACTGAATAACTGACTGT
* * *
63847167 TACTGAACAATTGATTGT
1 TACTGAATAACTGACTGT
63847185 TACTGAAT
1 TACTGAAT
63847193 GATATTGATA
Statistics
Matches: 100, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 100 1.00
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (18 bp):
TACTGAATAACTGACTGT
Found at i:63847135 original size:54 final size:54
Alignment explanation
Indices: 63847059--63847192 Score: 187
Period size: 54 Copynumber: 2.5 Consensus size: 54
63847049 TAAATAAAGG
* * ** *
63847059 TACTGAATAACTGATTGCTACTGAATAATTAACTGTTACTGAATAACTGACTGT
1 TACTGAATAATTGATTGTTACTGAATAACCAACTGTTACTGAATAACCGACTGT
* * *
63847113 TACTGAATAATTGACTGTTACTGAATAACCGACTGTTATTGAATAACCGACTGT
1 TACTGAATAATTGATTGTTACTGAATAACCAACTGTTACTGAATAACCGACTGT
*
63847167 TACTGAACAATTGATTGTTACTGAAT
1 TACTGAATAATTGATTGTTACTGAAT
63847193 GATATTGATA
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 70 1.00
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (54 bp):
TACTGAATAATTGATTGTTACTGAATAACCAACTGTTACTGAATAACCGACTGT
Found at i:63862401 original size:15 final size:15
Alignment explanation
Indices: 63862381--63862410 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
63862371 ATAGCCTGTT
63862381 TGGTTGAACGGAATG
1 TGGTTGAACGGAATG
*
63862396 TGGTTGAATGGAATG
1 TGGTTGAACGGAATG
63862411 AGCCATTCGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.03, G:0.40, T:0.30
Consensus pattern (15 bp):
TGGTTGAACGGAATG
Found at i:63862947 original size:13 final size:13
Alignment explanation
Indices: 63862929--63862953 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63862919 AATTGATATC
63862929 TGTGAAAATTTTG
1 TGTGAAAATTTTG
63862942 TGTGAAAATTTT
1 TGTGAAAATTTT
63862954 ATCGTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.20, T:0.48
Consensus pattern (13 bp):
TGTGAAAATTTTG
Found at i:63867512 original size:13 final size:13
Alignment explanation
Indices: 63867494--63867518 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63867484 CATGTGCGTC
63867494 ACACGGTCATGTT
1 ACACGGTCATGTT
63867507 ACACGGTCATGT
1 ACACGGTCATGT
63867519 GTCCCCTACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (13 bp):
ACACGGTCATGTT
Found at i:63880666 original size:51 final size:56
Alignment explanation
Indices: 63880560--63880667 Score: 147
Period size: 56 Copynumber: 2.0 Consensus size: 56
63880550 GGTTATATGT
*
63880560 TATTTTATAATATTATATATTATAATTTTTATTAATTCGTATTTTAATAATAATTA
1 TATTTTATAATATTATATATTATAATTTTTATTAATTCGTATTTTAATAAAAATTA
*
63880616 TATTTTATTAA-ATTATATA-T-T-A-TTTTATTAATTTGTA-TTTAATAAAAATTA
1 TATTTTA-TAATATTATATATTATAATTTTTATTAATTCGTATTTTAATAAAAATTA
63880667 T
1 T
63880668 GTTAAAATAT
Statistics
Matches: 49, Mismatches: 2, Indels: 7
0.84 0.03 0.12
Matches are distributed among these distances:
51 14 0.29
52 14 0.29
53 1 0.02
54 1 0.02
55 1 0.02
56 15 0.31
57 3 0.06
ACGTcount: A:0.40, C:0.01, G:0.02, T:0.57
Consensus pattern (56 bp):
TATTTTATAATATTATATATTATAATTTTTATTAATTCGTATTTTAATAAAAATTA
Found at i:63882088 original size:16 final size:16
Alignment explanation
Indices: 63882050--63882088 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
63882040 GTTTGGTTCA
*
63882050 CTATAATGGAATAGAG
1 CTATAATGGAATAGAC
* *
63882066 TTGTAATGGAATAGAC
1 CTATAATGGAATAGAC
63882082 CTATAAT
1 CTATAAT
63882089 CAGTAATTTA
Statistics
Matches: 18, Mismatches: 5, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.31
Consensus pattern (16 bp):
CTATAATGGAATAGAC
Found at i:63882287 original size:15 final size:15
Alignment explanation
Indices: 63882269--63882298 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
63882259 GGTTATTATT
63882269 AAAAATAATTTAATA
1 AAAAATAATTTAATA
63882284 AAAAATAATTTAATA
1 AAAAATAATTTAATA
63882299 CATTATTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
AAAAATAATTTAATA
Found at i:63903820 original size:21 final size:20
Alignment explanation
Indices: 63903771--63903827 Score: 57
Period size: 20 Copynumber: 2.9 Consensus size: 20
63903761 AAAAATATAT
63903771 TCTTTAAAAAATAAAAAAAA
1 TCTTTAAAAAATAAAAAAAA
*
63903791 T-TATGAAAAAA-ACATAAAAAA
1 TCT-TTAAAAAATA-A-AAAAAA
63903812 TCTTT-AAAAATAAAAA
1 TCTTTAAAAAATAAAAA
63903828 TATAAAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 11
0.70 0.05 0.26
Matches are distributed among these distances:
19 5 0.17
20 15 0.50
21 9 0.30
22 1 0.03
ACGTcount: A:0.68, C:0.05, G:0.02, T:0.25
Consensus pattern (20 bp):
TCTTTAAAAAATAAAAAAAA
Found at i:63903835 original size:26 final size:26
Alignment explanation
Indices: 63903775--63903852 Score: 67
Period size: 23 Copynumber: 3.2 Consensus size: 26
63903765 ATATATTCTT
* *
63903775 TAAAAA-ATAAAAAAAATTAT--GAA
1 TAAAAACATAAAAAATATTATAAAAA
*
63903798 -AAAAACATAAAAAATCTT-TAAAAA
1 TAAAAACATAAAAAATATTATAAAAA
* *
63903822 TAAAAATATAAAAAAATATTATAAAAT
1 TAAAAACAT-AAAAAATATTATAAAAA
63903849 TAAA
1 TAAA
63903853 TGTTATCTAA
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
22 6 0.14
23 10 0.23
24 2 0.05
25 7 0.16
26 9 0.21
27 9 0.21
ACGTcount: A:0.72, C:0.03, G:0.01, T:0.24
Consensus pattern (26 bp):
TAAAAACATAAAAAATATTATAAAAA
Found at i:63904293 original size:32 final size:32
Alignment explanation
Indices: 63904257--63904363 Score: 94
Period size: 31 Copynumber: 3.4 Consensus size: 32
63904247 CTATTTAAAC
*
63904257 AAAATTTAAAAATTATAATTTTTAAAATATAT
1 AAAATTTAAAAATAATAATTTTTAAAATATAT
* * * *
63904289 AAAA-TGAAAAATAAAAATTCTTTAAAATTTAA
1 AAAATTTAAAAATAATAATT-TTTAAAATATAT
* * *
63904321 AAAATTAAAAAATGAT--TTTTTAAAATATTTT
1 AAAATTTAAAAATAATAATTTTTAAAATA-TAT
*
63904352 AAAATATAAAAA
1 AAAATTTAAAAA
63904364 ATTCCAAAAT
Statistics
Matches: 59, Mismatches: 13, Indels: 7
0.75 0.16 0.09
Matches are distributed among these distances:
30 8 0.14
31 25 0.42
32 18 0.31
33 8 0.14
ACGTcount: A:0.60, C:0.01, G:0.02, T:0.37
Consensus pattern (32 bp):
AAAATTTAAAAATAATAATTTTTAAAATATAT
Found at i:63908922 original size:25 final size:25
Alignment explanation
Indices: 63908904--63908955 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
63908894 TAAAGTATTT
*
63908904 TTAACATATTCAACATAAAATGTAG
1 TTAACATATTCAACATAAAATATAG
*
63908929 TTAACATATTCAACATAAAATGTAG
1 TTAACATATTCAACATAAAATATAG
63908954 TT
1 TT
63908956 TTATTTTATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.46, C:0.12, G:0.08, T:0.35
Consensus pattern (25 bp):
TTAACATATTCAACATAAAATATAG
Found at i:63909147 original size:6 final size:6
Alignment explanation
Indices: 63909136--63909170 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
63909126 TTTAAGTAAT
*
63909136 AATTAC AATTAC AATTAC AATTAC AATTAT AATTA
1 AATTAC AATTAC AATTAC AATTAC AATTAC AATTA
63909171 GCACAACTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.37
Consensus pattern (6 bp):
AATTAC
Found at i:63920479 original size:18 final size:17
Alignment explanation
Indices: 63920458--63920501 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
63920448 GGAACAAAAT
*
63920458 AAAATTTAGAGATTTTAA
1 AAAATTTAGAGACTTT-A
*
63920476 AAAATTTA-AGGCTTTA
1 AAAATTTAGAGACTTTA
63920492 AAAATTTAGA
1 AAAATTTAGA
63920502 AAATTTTGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 9 0.39
17 6 0.26
18 8 0.35
ACGTcount: A:0.50, C:0.02, G:0.11, T:0.36
Consensus pattern (17 bp):
AAAATTTAGAGACTTTA
Found at i:63923227 original size:28 final size:28
Alignment explanation
Indices: 63923187--63923245 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
63923177 TGGCATAATA
63923187 CATGGCATGTTTAAACAACCAAAACATC
1 CATGGCATGTTTAAACAACCAAAACATC
63923215 CATGGCATGTTTAAACAACCAAAACATC
1 CATGGCATGTTTAAACAACCAAAACATC
63923243 CAT
1 CAT
63923246 AATCAAGGCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.42, C:0.25, G:0.10, T:0.22
Consensus pattern (28 bp):
CATGGCATGTTTAAACAACCAAAACATC
Found at i:63926584 original size:8 final size:8
Alignment explanation
Indices: 63926570--63926600 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
63926560 ATATAAGTAA
63926570 ATATTATT
1 ATATTATT
*
63926578 TTATTATT
1 ATATTATT
63926586 ATATTATT
1 ATATTATT
63926594 ATATTAT
1 ATATTAT
63926601 ATTAAAAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (8 bp):
ATATTATT
Found at i:63927714 original size:26 final size:26
Alignment explanation
Indices: 63927685--63927792 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
63927675 TGGTACAAAT
63927685 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
63927711 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
63927737 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
63927763 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
63927789 TGAT
1 TGAT
63927793 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:63931167 original size:28 final size:28
Alignment explanation
Indices: 63931127--63931182 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
63931117 TGGTATAGGG
63931127 GTGTTACATAGCTACTCGGTGCTGCTCA
1 GTGTTACATAGCTACTCGGTGCTGCTCA
63931155 GTGTTACATAGCTACTCGGTGCTGCTCA
1 GTGTTACATAGCTACTCGGTGCTGCTCA
63931183 CACAAGCTGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.18, C:0.25, G:0.25, T:0.32
Consensus pattern (28 bp):
GTGTTACATAGCTACTCGGTGCTGCTCA
Found at i:63938867 original size:13 final size:13
Alignment explanation
Indices: 63938851--63938903 Score: 72
Period size: 13 Copynumber: 4.1 Consensus size: 13
63938841 TTTAAACCAA
63938851 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
*
63938864 ACTTCTCAAAAGC
1 ACTTTTCAAAAGC
*
63938877 ACTTTTTC-ACAGC
1 AC-TTTTCAAAAGC
63938890 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
63938903 A
1 A
63938904 TTGCCAAACT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
12 5 0.15
13 25 0.74
14 4 0.12
ACGTcount: A:0.36, C:0.26, G:0.08, T:0.30
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:63940643 original size:21 final size:21
Alignment explanation
Indices: 63940619--63940681 Score: 56
Period size: 21 Copynumber: 3.0 Consensus size: 21
63940609 ATTTTAACCA
63940619 TTCTGGGTTTCAGTTTAGCTC
1 TTCTGGGTTTCAGTTTAGCTC
* * * *
63940640 TTCTGAGCTTT-AGATTAACTG
1 TTCTG-GGTTTCAGTTTAGCTC
* *
63940661 TTATGGGTTTCTGTTTAGCTC
1 TTCTGGGTTTCAGTTTAGCTC
63940682 CTACGAGCTT
Statistics
Matches: 30, Mismatches: 10, Indels: 4
0.68 0.23 0.09
Matches are distributed among these distances:
20 4 0.13
21 22 0.73
22 4 0.13
ACGTcount: A:0.14, C:0.16, G:0.22, T:0.48
Consensus pattern (21 bp):
TTCTGGGTTTCAGTTTAGCTC
Found at i:63945793 original size:10 final size:10
Alignment explanation
Indices: 63945759--63945797 Score: 53
Period size: 10 Copynumber: 3.8 Consensus size: 10
63945749 TTTAACCAGT
63945759 TCAAAACATG
1 TCAAAACATG
63945769 ATCAAATACAT-
1 -TCAAA-ACATG
63945780 TCAAAACATG
1 TCAAAACATG
63945790 TCAAAACA
1 TCAAAACA
63945798 ATCATCCTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
9 4 0.15
10 13 0.50
11 5 0.19
12 4 0.15
ACGTcount: A:0.54, C:0.21, G:0.05, T:0.21
Consensus pattern (10 bp):
TCAAAACATG
Found at i:63958676 original size:21 final size:21
Alignment explanation
Indices: 63958647--63958694 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
63958637 AAGTATTTAC
*
63958647 TTATTATTTAAGAA-ATAATAA
1 TTATAATTTAA-AATATAATAA
63958668 TTATAATTTAAAATATAATAA
1 TTATAATTTAAAATATAATAA
63958689 -TATAAT
1 TTATAAT
63958695 AGTTATAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 8 0.32
21 17 0.68
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (21 bp):
TTATAATTTAAAATATAATAA
Found at i:63958785 original size:17 final size:17
Alignment explanation
Indices: 63958763--63958796 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
63958753 AGCAGGGAAA
63958763 GAAAGAAGAAA-AAAAGG
1 GAAAGAA-AAAGAAAAGG
63958780 GAAAGAAAAAGAAAAGG
1 GAAAGAAAAAGAAAAGG
63958797 AAAATTTAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 3 0.19
17 13 0.81
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (17 bp):
GAAAGAAAAAGAAAAGG
Found at i:63958793 original size:20 final size:21
Alignment explanation
Indices: 63958756--63958794 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
63958746 CACGAATAGC
63958756 AGGGAAAGAAAGAAGAAAAAA
1 AGGGAAAGAAAGAAGAAAAAA
63958777 AGGGAAAGAAA-AAGAAAA
1 AGGGAAAGAAAGAAGAAAA
63958795 GGAAAATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (21 bp):
AGGGAAAGAAAGAAGAAAAAA
Found at i:63962529 original size:45 final size:41
Alignment explanation
Indices: 63962444--63962525 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
63962434 GAAGTCCCTA
63962444 AGCCGTGCGTCTTTCTTTCTTCTTTCTCTTTTTCTTTTTCT
1 AGCCGTGCGTCTTTCTTTCTTCTTTCTCTTTTTCTTTTTCT
*
63962485 AGCCGTGCGTCTTTCTTTCTTCTTTCTCTTTTACTTTTTCT
1 AGCCGTGCGTCTTTCTTTCTTCTTTCTCTTTTTCTTTTTCT
63962526 TTCTTTTCTT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.04, C:0.27, G:0.10, T:0.60
Consensus pattern (41 bp):
AGCCGTGCGTCTTTCTTTCTTCTTTCTCTTTTTCTTTTTCT
Found at i:63964551 original size:2 final size:2
Alignment explanation
Indices: 63964544--63964579 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
63964534 GCAAACTCAT
63964544 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
63964580 AATCCGCGTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:63965757 original size:18 final size:18
Alignment explanation
Indices: 63965718--63965815 Score: 146
Period size: 18 Copynumber: 5.5 Consensus size: 18
63965708 AATGATATGT
63965718 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
* *
63965735 AATCTTAAATATGATTGC
1 AATCTTAGATATGATTAC
63965753 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
*
63965770 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTAC
63965788 AATCTTAGATATGATATAC
1 AATCTTAGATATGAT-TAC
63965807 AATCTTAGA
1 AATCTTAGA
63965816 AGATATGATT
Statistics
Matches: 72, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
17 29 0.40
18 32 0.44
19 11 0.15
ACGTcount: A:0.40, C:0.11, G:0.12, T:0.37
Consensus pattern (18 bp):
AATCTTAGATATGATTAC
Found at i:63965758 original size:35 final size:35
Alignment explanation
Indices: 63965709--63965813 Score: 165
Period size: 35 Copynumber: 2.9 Consensus size: 35
63965699 ATAATCTTCA
*
63965709 ATGATATGTAATCTTAGATATGATACAATCTTAAAT
1 ATGAT-TGCAATCTTAGATATGATACAATCTTAAAT
*
63965745 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAAAT
63965780 ATGATTGCAATCTTAGATATGATATACAATCTTA
1 ATGATTGCAATCTTAGATATG--ATACAATCTTA
63965814 GAAGATATGA
Statistics
Matches: 65, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
35 49 0.75
36 5 0.08
37 11 0.17
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.38
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAAAT
Found at i:63966135 original size:12 final size:11
Alignment explanation
Indices: 63966120--63966153 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
63966110 TATTTTTAAT
63966120 TTATTATATATA
1 TTATT-TATATA
63966132 TTATTTATTATA
1 TTATTTA-TATA
63966144 TTATTTATAT
1 TTATTTATAT
63966154 TTTCAAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 5 0.24
12 16 0.76
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
TTATTTATATA
Found at i:63966145 original size:21 final size:21
Alignment explanation
Indices: 63966121--63966229 Score: 61
Period size: 21 Copynumber: 5.3 Consensus size: 21
63966111 ATTTTTAATT
63966121 TATTATATATATTATTTATTA
1 TATTATATATATTATTTATTA
* *
63966142 TATTATTTATATT-TTCA--A
1 TATTATATATATTATTTATTA
* * *
63966160 AATT-TGTAAATTA-TTATTA
1 TATTATATATATTATTTATTA
* *
63966179 TA-TATTATATTTTAACTTATATA
1 TATTA-TATATATT-ATTTAT-TA
*
63966202 TCTTATATAT-TTATTTATTTA
1 TATTATATATATTATTTA-TTA
63966223 TATTATA
1 TATTATA
63966230 CATTATTTTA
Statistics
Matches: 65, Mismatches: 13, Indels: 20
0.66 0.13 0.20
Matches are distributed among these distances:
17 8 0.12
18 5 0.08
19 2 0.03
20 8 0.12
21 25 0.38
22 7 0.11
23 8 0.12
24 2 0.03
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.60
Consensus pattern (21 bp):
TATTATATATATTATTTATTA
Found at i:63966151 original size:16 final size:16
Alignment explanation
Indices: 63966118--63966148 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
63966108 CTTATTTTTA
63966118 ATTTATTATATATATT
1 ATTTATTATATATATT
63966134 ATTTATTATAT-TATT
1 ATTTATTATATATATT
63966149 TATATTTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
ATTTATTATATATATT
Found at i:63966186 original size:7 final size:7
Alignment explanation
Indices: 63966169--63966275 Score: 50
Period size: 7 Copynumber: 15.7 Consensus size: 7
63966159 AAATTTGTAA
63966169 ATTAT-T
1 ATTATAT
63966175 ATTATAT
1 ATTATAT
63966182 ATTATAT
1 ATTATAT
63966189 -TT-TA-
1 ATTATAT
63966193 ACTTATAT
1 A-TTATAT
63966201 ATCTTATAT
1 A--TTATAT
*
63966210 ATTTATTT
1 A-TTATAT
63966218 ATT-TAT
1 ATTATAT
*
63966224 ATTATAC
1 ATTATAT
63966231 ATTAT-T
1 ATTATAT
* *
63966237 -TTAAAA
1 ATTATAT
*
63966243 ACTTACAT
1 A-TTATAT
*
63966251 -TTTTAT
1 ATTATAT
63966257 ATTATAT
1 ATTATAT
*
63966264 ATTATAA
1 ATTATAT
63966271 ATTAT
1 ATTAT
63966276 TTCATTTATT
Statistics
Matches: 77, Mismatches: 13, Indels: 21
0.69 0.12 0.19
Matches are distributed among these distances:
5 5 0.06
6 18 0.23
7 35 0.45
8 11 0.14
9 8 0.10
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (7 bp):
ATTATAT
Found at i:63969618 original size:2 final size:2
Alignment explanation
Indices: 63969613--63969645 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
63969603 AGAAAGAAAA
63969613 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A- AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
63969646 GGCCACGGTT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:63973225 original size:40 final size:40
Alignment explanation
Indices: 63973166--63973317 Score: 234
Period size: 40 Copynumber: 3.8 Consensus size: 40
63973156 CATTTGAATG
* * *
63973166 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
*
63973206 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
63973246 ATATCCAGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
63973286 ATATCCGGGCTAAGACCCGAGGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
63973318 TTGTGGTTAT
Statistics
Matches: 103, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
40 100 0.97
41 3 0.03
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
Found at i:63973329 original size:40 final size:40
Alignment explanation
Indices: 63973166--63973337 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
63973156 CATTTGAATG
* * *
63973166 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGT-GATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGA-T
* *
63973206 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGAT
* *
63973246 ATATCCAGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGAT
* ** *
63973286 ATATCCGGGCTAAGACCCGAGGGCATTTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGAT
63973326 ATATCC-GGCTAA
1 ATATCCGGGCTAA
63973338 ATTCCGAAGA
Statistics
Matches: 119, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 6 0.05
40 111 0.93
41 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGAT
Found at i:63975433 original size:20 final size:21
Alignment explanation
Indices: 63975373--63975432 Score: 88
Period size: 21 Copynumber: 2.9 Consensus size: 21
63975363 CTTCTATTTC
*
63975373 AAAA-AAAAAGAGAAAAAAAG
1 AAAAGAAAAAGAGAAAAAAAT
63975393 AAAAGAAAAAGAGAAAAAAAT
1 AAAAGAAAAAGAGAAAAAAAT
63975414 AAAGAGAAAAAGA-AAAAAA
1 AAA-AGAAAAAGAGAAAAAA
63975433 TGGAGAGGCC
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
20 4 0.11
21 24 0.65
22 9 0.24
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (21 bp):
AAAAGAAAAAGAGAAAAAAAT
Found at i:63976358 original size:44 final size:44
Alignment explanation
Indices: 63976310--63976489 Score: 179
Period size: 44 Copynumber: 4.1 Consensus size: 44
63976300 CAAAGAAACA
* *
63976310 AGATTTGGCATCCCTATGTTTATAGGGAACAGATCGAAGATAGT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* * * * * * **
63976354 AGATTTGACATTCCTGTGCTCTCT-GCGAAGCAGATTGAAGATTCC
1 AGATTTGGCATCCCTGTG-TTTATAGGGAA-CAGATCGAAGATAGC
*
63976399 AGCA--TGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGC
1 AG-ATTTGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
* *
63976442 AGATTTGGCATCCTTGTGTTTATAGGGAACAGATCAAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
63976486 AGAT
1 AGAT
63976490 CTAACCTTTA
Statistics
Matches: 108, Mismatches: 20, Indels: 16
0.75 0.14 0.11
Matches are distributed among these distances:
42 2 0.02
43 16 0.15
44 72 0.67
45 17 0.16
46 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (44 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
Found at i:63976686 original size:119 final size:119
Alignment explanation
Indices: 63976475--63976955 Score: 764
Period size: 119 Copynumber: 4.0 Consensus size: 119
63976465 AGGGAACAGA
* * *
63976475 TCAAAGATAGCAGATCTAACCTTTAGATGTTTATACTGAAGCAGATCCGAGATGATTTGGCATTC
1 TCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTC
*
63976540 TTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTC
66 TTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAAACGTTC
* *
63976594 TCAAATATAGTAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTC
1 TCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTC
*
63976659 TTGTGTTTACAAGGAACAAATCGAGGACATAACAGATTTGACTCTCAAACGTTC
66 TTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAAACGTTC
* * *
63976713 TCAAATATAACAGATCTAACCTTCAAATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTC
1 TCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTC
* * *
63976778 TTGTGTTTACAAGAAACAAATCGAGGAAATAGCAGATTTGACTCTCATACGTTC
66 TTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAAACGTTC
* * *
63976832 TCAAATATAGCAGATCTAACCTTTAGATGTTTATACTGAAGCAGATCCAAGATGGTTTGGCATCC
1 TCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTC
* * * * * *
63976897 TTGTGCTTACAAGGAACAAATCGAGGATATTGCAGATATGGCTCTCAAATGTTC
66 TTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAAACGTTC
63976951 TCAAA
1 TCAAA
63976956 CAGACTTAAG
Statistics
Matches: 334, Mismatches: 28, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
119 334 1.00
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (119 bp):
TCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTC
TTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAAACGTTC
Found at i:63977098 original size:84 final size:83
Alignment explanation
Indices: 63976879--63977148 Score: 441
Period size: 83 Copynumber: 3.2 Consensus size: 83
63976869 GAAGCAGATC
** *
63976879 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGATATTGCAGATATGGCTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGCAGATATGACTCTCA
63976944 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* *
63976962 TAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGCAGACATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGCAGATATGACTCTCA
63977027 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* * *
63977045 CAAGATGGTTTAGGCATCCTTGTTCTTACAAGGAACAAGTCGAGGACCTTGCAGATATGATTCTC
1 CAAGATGGTTT-GGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGCAGATATGACTCTC
63977110 AAATGTTCTCAAACAGACT
65 AAATGTTCTCAAACAGACT
* *
63977129 CAAGATGATTTGACATCCTT
1 CAAGATGGTTTGGCATCCTT
63977149 ACAAATCGAA
Statistics
Matches: 174, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
83 96 0.55
84 78 0.45
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.28
Consensus pattern (83 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGCAGATATGACTCTCA
AATGTTCTCAAACAGACT
Found at i:63977582 original size:18 final size:18
Alignment explanation
Indices: 63977543--63977640 Score: 146
Period size: 18 Copynumber: 5.5 Consensus size: 18
63977533 AATGATATGT
63977543 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
* *
63977560 AATCTTAAATATGATTGC
1 AATCTTAGATATGATTAC
63977578 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
*
63977595 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTAC
63977613 AATCTTAGATATGATATAC
1 AATCTTAGATATGAT-TAC
63977632 AATCTTAGA
1 AATCTTAGA
63977641 AGATATGATT
Statistics
Matches: 72, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
17 29 0.40
18 32 0.44
19 11 0.15
ACGTcount: A:0.40, C:0.11, G:0.12, T:0.37
Consensus pattern (18 bp):
AATCTTAGATATGATTAC
Found at i:63977583 original size:35 final size:35
Alignment explanation
Indices: 63977534--63977638 Score: 165
Period size: 35 Copynumber: 2.9 Consensus size: 35
63977524 ATAATCTTCA
*
63977534 ATGATATGTAATCTTAGATATGATACAATCTTAAAT
1 ATGAT-TGCAATCTTAGATATGATACAATCTTAAAT
*
63977570 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAAAT
63977605 ATGATTGCAATCTTAGATATGATATACAATCTTA
1 ATGATTGCAATCTTAGATATG--ATACAATCTTA
63977639 GAAGATATGA
Statistics
Matches: 65, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
35 49 0.75
36 5 0.08
37 11 0.17
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.38
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAAAT
Found at i:63977960 original size:12 final size:11
Alignment explanation
Indices: 63977945--63977978 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
63977935 TATTTTTAAT
63977945 TTATTATATATA
1 TTATT-TATATA
63977957 TTATTTATTATA
1 TTATTTA-TATA
63977969 TTATTTATAT
1 TTATTTATAT
63977979 TTTCAAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 5 0.24
12 16 0.76
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
TTATTTATATA
Found at i:63977976 original size:16 final size:16
Alignment explanation
Indices: 63977943--63977973 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
63977933 CTTATTTTTA
63977943 ATTTATTATATATATT
1 ATTTATTATATATATT
63977959 ATTTATTATAT-TATT
1 ATTTATTATATATATT
63977974 TATATTTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
ATTTATTATATATATT
Found at i:63978092 original size:22 final size:22
Alignment explanation
Indices: 63978067--63978111 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 22
63978057 TTTAAAAACT
63978067 TAAATT-TTT-ATATTATATATTA
1 TAAATTATTTCAT-TTAT-TATTA
63978089 TAAATTATTTCATTTATTATTA
1 TAAATTATTTCATTTATTATTA
63978111 T
1 T
63978112 TTTTATATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
22 12 0.57
23 7 0.33
24 2 0.10
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (22 bp):
TAAATTATTTCATTTATTATTA
Found at i:63983891 original size:21 final size:22
Alignment explanation
Indices: 63983867--63983923 Score: 82
Period size: 21 Copynumber: 2.7 Consensus size: 22
63983857 CTATTTCAAA
*
63983867 AAAAAGAGAAAAAAGGAAA-AG
1 AAAAAGAGAAAAAAAGAAAGAG
*
63983888 AAAAAGAGAAAAAAATAAAGAG
1 AAAAAGAGAAAAAAAGAAAGAG
63983910 AAAAA-AGAAAAAAA
1 AAAAAGAGAAAAAAA
63983924 TGGAGAGGCC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
21 26 0.79
22 7 0.21
ACGTcount: A:0.81, C:0.00, G:0.18, T:0.02
Consensus pattern (22 bp):
AAAAAGAGAAAAAAAGAAAGAG
Found at i:63983900 original size:14 final size:14
Alignment explanation
Indices: 63983867--63983921 Score: 58
Period size: 14 Copynumber: 3.8 Consensus size: 14
63983857 CTATTTCAAA
*
63983867 AAAAAGAGAAAAAAG
1 AAAAAGA-AAAAGAG
*
63983882 GAAAAGAAAAAGAG
1 AAAAAGAAAAAGAG
63983896 AAAAA-AATAAAGAG
1 AAAAAGAA-AAAGAG
63983910 AAAAAAGAAAAA
1 -AAAAAGAAAAA
63983922 AATGGAGAGG
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
13 2 0.06
14 16 0.47
15 14 0.41
16 2 0.06
ACGTcount: A:0.80, C:0.00, G:0.18, T:0.02
Consensus pattern (14 bp):
AAAAAGAAAAAGAG
Found at i:63983924 original size:21 final size:20
Alignment explanation
Indices: 63983866--63983924 Score: 73
Period size: 22 Copynumber: 2.8 Consensus size: 20
63983856 TCTATTTCAA
*
63983866 AAAAAAGAGAAAAAAGGAAAAG
1 AAAAAAGA-AAAAAA-TAAAAG
63983888 AAAAAGAGAAAAAAATAAAGAG
1 AAAAA-AGAAAAAAATAAA-AG
63983910 AAAAAAGAAAAAAAT
1 AAAAAAGAAAAAAAT
63983925 GGAGAGGCCA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
21 13 0.38
22 18 0.53
23 3 0.09
ACGTcount: A:0.80, C:0.00, G:0.17, T:0.03
Consensus pattern (20 bp):
AAAAAAGAAAAAAATAAAAG
Found at i:63984942 original size:44 final size:44
Alignment explanation
Indices: 63984801--63984980 Score: 172
Period size: 44 Copynumber: 4.1 Consensus size: 44
63984791 CAAATAAACA
* *
63984801 AGATTTGGCATCCCTATGTTTATAGGGAACAGATCGAAGATAGT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* * * * * **
63984845 AGATCTGACATTCCTGTGCTCTT-T-GCGAAGCAGATTGAAGATTTC
1 AGATTTGGCATCCCTGTG-T-TTATAGGGAA-CAGATCGAAGATAGC
*
63984890 AGCA--TGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGC
1 AG-ATTTGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
* *
63984933 AGATTTGGCATCCTTGTGTTTATAGGGAACAGATCAAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
63984977 AGAT
1 AGAT
63984981 CTAACCTTTA
Statistics
Matches: 109, Mismatches: 17, Indels: 20
0.75 0.12 0.14
Matches are distributed among these distances:
42 4 0.04
43 15 0.14
44 71 0.65
45 16 0.15
46 3 0.03
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (44 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
Found at i:63985177 original size:119 final size:119
Alignment explanation
Indices: 63984966--63985446 Score: 791
Period size: 119 Copynumber: 4.0 Consensus size: 119
63984956 AGGGAACAGA
* * * *
63984966 TCAAAGATAGCAGATCTAACCTTTAGATGTTTATATTGAAGCAGATCCGAGATGATTTGGCATTC
1 TCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTC
63985031 TTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTC
66 TTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTC
*
63985085 TCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTC
1 TCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTC
*
63985150 TTGTGTTTACAAGGAACAAATCGAGGACATAACAGATTTGACTCTCAGACGTTC
66 TTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTC
* *
63985204 TCAAATATAACAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTC
1 TCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTC
* * *
63985269 TTGTGTTTACAAGAAACAAATCGAGGAAATAGCAGATTTGACTCTCATACGTTC
66 TTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTC
* * *
63985323 TCAAATATAGCAGATCTAACCTTTAGATGTTTATACTGAAGCAGATCCAAGATGGTTTGGCATCC
1 TCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTC
* * * * *
63985388 TTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTC
66 TTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTC
63985442 TCAAA
1 TCAAA
63985447 CAGACTCAAG
Statistics
Matches: 339, Mismatches: 23, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
119 339 1.00
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (119 bp):
TCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTC
TTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTC
Found at i:63985589 original size:84 final size:83
Alignment explanation
Indices: 63985370--63985639 Score: 459
Period size: 83 Copynumber: 3.2 Consensus size: 83
63985360 GAAGCAGATC
*
63985370 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGCAGATATGACTCTCA
63985435 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* *
63985453 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGCAGACATGACTCTAA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGCAGATATGACTCTCA
63985518 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* * *
63985536 CAAGATGGTTTAGGCATCCTTGTTCTTACAAGGAACAAGTCGAGGACCTTGCAGATATGATTCTC
1 CAAGATGGTTT-GGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGCAGATATGACTCTC
63985601 AAATGTTCTCAAACAGACT
65 AAATGTTCTCAAACAGACT
* *
63985620 CAAGATGATTTGACATCCTT
1 CAAGATGGTTTGGCATCCTT
63985640 ACAAATCCAA
Statistics
Matches: 176, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
83 99 0.56
84 77 0.44
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (83 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGCAGATATGACTCTCA
AATGTTCTCAAACAGACT
Found at i:63985674 original size:110 final size:111
Alignment explanation
Indices: 63985536--63985749 Score: 367
Period size: 110 Copynumber: 1.9 Consensus size: 111
63985526 CAAACAGACT
* * * *
63985536 CAAGATGGTTTAGGCATCCTTGTTCTTACAAGGAACAAGTCGAGGACCTTGCAGATATGATTCTC
1 CAAGATGGTTTAGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTC
63985601 AAATGTTCTCAAACAGACTCAAGATGATTTGACATCCTTACAAATC
66 AAATGTTCTCAAACAGACTCAAGATGATTTGACATCCTTACAAATC
63985647 CAAGATGGTTT-GGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTC
1 CAAGATGGTTTAGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTC
* *
63985711 AAATGTTCTCAAACAGACTCAAGATGGTTTGGCATCCTT
66 AAATGTTCTCAAACAGACTCAAGATGATTTGACATCCTT
63985750 GTGCTTACAA
Statistics
Matches: 97, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
110 86 0.89
111 11 0.11
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.29
Consensus pattern (111 bp):
CAAGATGGTTTAGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTC
AAATGTTCTCAAACAGACTCAAGATGATTTGACATCCTTACAAATC
Found at i:63985682 original size:194 final size:193
Alignment explanation
Indices: 63985453--63985832 Score: 661
Period size: 194 Copynumber: 2.0 Consensus size: 193
63985443 CAAACAGACT
*
63985453 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGCAGACATGACTCTAA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGACATGACTCTAA
* * *
63985518 AATGTTCTCAAACAGACTCAAGATGGTTTAGGCATCCTTGTTCTTACAAGGAACAAGTCGAGGAC
66 AATGTTCTCAAACAGACTCAAGATGGTTT-GGCATCCTTGTGCTTACAAGGAACAAATCAAGGAC
* *
63985583 CTTGCAGATATGATTCTCAAATGTTCTCAAACAGACTCAAGATGATTTGACATCCTTACAAATC
130 ATTGCAGATATGACTCTCAAATGTTCTCAAACAGACTCAAGATGATTTGACATCCTTACAAATC
* *
63985647 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGACATGACTCTAA
63985712 AATGTTCTCAAACAGACTCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCAAGGACA
66 AATGTTCTCAAACAGACTCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCAAGGACA
* *
63985777 TTGCAGATATGACTCTCAAATGTTCTCAAACAGACTCAAGATGGTTTGGCATCCTT
131 TTGCAGATATGACTCTCAAATGTTCTCAAACAGACTCAAGATGATTTGACATCCTT
63985833 GTGCTTACAA
Statistics
Matches: 176, Mismatches: 10, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
193 85 0.48
194 91 0.52
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (193 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGACATGACTCTAA
AATGTTCTCAAACAGACTCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCAAGGACA
TTGCAGATATGACTCTCAAATGTTCTCAAACAGACTCAAGATGATTTGACATCCTTACAAATC
Found at i:63985786 original size:83 final size:83
Alignment explanation
Indices: 63985647--63985998 Score: 605
Period size: 83 Copynumber: 4.2 Consensus size: 83
63985637 CTTACAAATC
63985647 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
63985712 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
*
63985730 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCAAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
63985795 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* * *
63985813 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGCATACATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
63985878 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* * * *
63985896 CAAGATGGTTTAGACATCCTTGTGCTTACAAGGAACAAGTCGAGGACCTTGCAGATATGATTCTC
1 CAAGATGGTTT-GGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTC
63985961 AAATGTTCTCAAACAGACT
65 AAATGTTCTCAAACAGACT
* *
63985980 CAAGATGATTTGACATCCT
1 CAAGATGGTTTGGCATCCT
63985999 CACAAATCGA
Statistics
Matches: 257, Mismatches: 11, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
83 180 0.70
84 77 0.30
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (83 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
AATGTTCTCAAACAGACT
Found at i:63985914 original size:277 final size:277
Alignment explanation
Indices: 63985367--63985916 Score: 994
Period size: 277 Copynumber: 2.0 Consensus size: 277
63985357 ACTGAAGCAG
63985367 ATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTC
1 ATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTC
*
63985432 TCAAATGTTCTCAAACAGACTCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGG
66 TCAAATGTTCTCAAACAGACTCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCAAGG
* *
63985497 ACCTTGCAGACATGACTCTAAAATGTTCTCAAACAGACTCAAGATGGTTTAGGCATCCTTGTTCT
131 ACATTGCAGACATGACTCTAAAATGTTCTCAAACAGACTCAAGATGGTTTAGGCATCCTTGTGCT
* * *
63985562 TACAAGGAACAAGTCGAGGACCTTGCAGATATGATTCTCAAATGTTCTCAAACAGACTCAAGATG
196 TACAAGGAACAAATCGAGGACCTTGCAGACATGACTCTCAAATGTTCTCAAACAGACTCAAGATG
63985627 ATTTGACATCCTTACAA
261 ATTTGACATCCTTACAA
63985644 ATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTC
1 ATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTC
63985709 TCAAATGTTCTCAAACAGACTCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCAAGG
66 TCAAATGTTCTCAAACAGACTCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCAAGG
* *
63985774 ACATTGCAGATATGACTCTCAAATGTTCTCAAACAGACTCAAGATGGTTT-GGCATCCTTGTGCT
131 ACATTGCAGACATGACTCTAAAATGTTCTCAAACAGACTCAAGATGGTTTAGGCATCCTTGTGCT
*
63985838 TACAAGGAACAAATCGAGGACCTTGCATACATGACTCTCAAATGTTCTCAAACAGACTCAAGATG
196 TACAAGGAACAAATCGAGGACCTTGCAGACATGACTCTCAAATGTTCTCAAACAGACTCAAGATG
*
63985903 GTTTAGACATCCTT
261 ATTT-GACATCCTT
63985917 GTGCTTACAA
Statistics
Matches: 262, Mismatches: 10, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
276 77 0.29
277 185 0.71
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.27
Consensus pattern (277 bp):
ATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTC
TCAAATGTTCTCAAACAGACTCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCAAGG
ACATTGCAGACATGACTCTAAAATGTTCTCAAACAGACTCAAGATGGTTTAGGCATCCTTGTGCT
TACAAGGAACAAATCGAGGACCTTGCAGACATGACTCTCAAATGTTCTCAAACAGACTCAAGATG
ATTTGACATCCTTACAA
Found at i:63986431 original size:18 final size:18
Alignment explanation
Indices: 63986392--63986524 Score: 191
Period size: 18 Copynumber: 7.5 Consensus size: 18
63986382 AATGATATGT
63986392 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
* *
63986409 AATCTTAAATATGATTGC
1 AATCTTAGATATGATTAC
63986427 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
*
63986444 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTAC
*
63986462 AATCTTAGATAT-AATAC
1 AATCTTAGATATGATTAC
*
63986479 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTAC
63986497 AATCTTAGATATGATATAC
1 AATCTTAGATATGAT-TAC
63986516 AATCTTAGA
1 AATCTTAGA
63986525 AGATATGATT
Statistics
Matches: 102, Mismatches: 10, Indels: 6
0.86 0.08 0.05
Matches are distributed among these distances:
17 44 0.43
18 47 0.46
19 11 0.11
ACGTcount: A:0.40, C:0.11, G:0.12, T:0.37
Consensus pattern (18 bp):
AATCTTAGATATGATTAC
Found at i:63986432 original size:35 final size:35
Alignment explanation
Indices: 63986383--63986524 Score: 230
Period size: 35 Copynumber: 4.0 Consensus size: 35
63986373 ATAATCTTCA
* *
63986383 ATGATATGTAATCTTAGATATGATACAATCTTAAAT
1 ATGAT-TGCAATCTTAGATATGATACAATCTTAGAT
63986419 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
*
63986454 ATGATTGCAATCTTAGATATAATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
63986489 ATGATTGCAATCTTAGATATGATATACAATCTTAGA
1 ATGATTGCAATCTTAGATATG--ATACAATCTTAGA
63986525 AGATATGATT
Statistics
Matches: 100, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
35 82 0.82
36 5 0.05
37 13 0.13
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAGAT
Found at i:63986844 original size:12 final size:11
Alignment explanation
Indices: 63986829--63986862 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
63986819 TATTTTTAAT
63986829 TTATTATATATA
1 TTATT-TATATA
63986841 TTATTTATTATA
1 TTATTTA-TATA
63986853 TTATTTATAT
1 TTATTTATAT
63986863 TTTCAAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 5 0.24
12 16 0.76
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
TTATTTATATA
Found at i:63986854 original size:21 final size:21
Alignment explanation
Indices: 63986830--63986938 Score: 61
Period size: 21 Copynumber: 5.3 Consensus size: 21
63986820 ATTTTTAATT
63986830 TATTATATATATTATTTATTA
1 TATTATATATATTATTTATTA
* *
63986851 TATTATTTATATT-TTCA--A
1 TATTATATATATTATTTATTA
* * *
63986869 AATT-TGTAAATTA-TTATTA
1 TATTATATATATTATTTATTA
* *
63986888 TA-TATTATATTTTAACTTATATA
1 TATTA-TATATATT-ATTTAT-TA
*
63986911 TCTTATATAT-TTATTTATTTA
1 TATTATATATATTATTTA-TTA
63986932 TATTATA
1 TATTATA
63986939 CATTATTTTA
Statistics
Matches: 65, Mismatches: 13, Indels: 20
0.66 0.13 0.20
Matches are distributed among these distances:
17 8 0.12
18 5 0.08
19 2 0.03
20 8 0.12
21 25 0.38
22 7 0.11
23 8 0.12
24 2 0.03
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.60
Consensus pattern (21 bp):
TATTATATATATTATTTATTA
Found at i:63986860 original size:16 final size:16
Alignment explanation
Indices: 63986827--63986857 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
63986817 CTTATTTTTA
63986827 ATTTATTATATATATT
1 ATTTATTATATATATT
63986843 ATTTATTATAT-TATT
1 ATTTATTATATATATT
63986858 TATATTTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
ATTTATTATATATATT
Found at i:63986895 original size:7 final size:7
Alignment explanation
Indices: 63986878--63987027 Score: 56
Period size: 7 Copynumber: 22.4 Consensus size: 7
63986868 AAATTTGTAA
63986878 ATTAT-T
1 ATTATAT
63986884 ATTATAT
1 ATTATAT
63986891 ATTATAT
1 ATTATAT
63986898 -TT-TA-
1 ATTATAT
63986902 ACTTATAT
1 A-TTATAT
63986910 ATCTTATAT
1 A--TTATAT
*
63986919 ATTTATTT
1 A-TTATAT
63986927 ATT-TAT
1 ATTATAT
*
63986933 ATTATAC
1 ATTATAT
63986940 ATTAT-T
1 ATTATAT
* *
63986946 -TTAAAA
1 ATTATAT
*
63986952 ACTTACAT
1 A-TTATAT
*
63986960 -TTTTAT
1 ATTATAT
63986966 ATTATAT
1 ATTATAT
*
63986973 ATTATAA
1 ATTATAT
63986980 ATTAT-T
1 ATTATAT
*
63986986 -TTATTT
1 ATTATAT
63986992 ATTAT-T
1 ATTATAT
*
63986998 ATT-TTT
1 ATTATAT
63987004 A-TATACT
1 ATTATA-T
*
63987011 ATCATAT
1 ATTATAT
*
63987018 ATTATCT
1 ATTATAT
63987025 ATT
1 ATT
63987028 TTAAAATTCA
Statistics
Matches: 109, Mismatches: 18, Indels: 33
0.68 0.11 0.21
Matches are distributed among these distances:
5 11 0.10
6 26 0.24
7 50 0.46
8 14 0.13
9 8 0.07
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (7 bp):
ATTATAT
Found at i:63989776 original size:28 final size:30
Alignment explanation
Indices: 63989741--63989808 Score: 86
Period size: 29 Copynumber: 2.3 Consensus size: 30
63989731 CAATACAAGT
*
63989741 TATAAAAATTA-TTAAACTTTAATAAAAA-
1 TATAAAAATTATTTAAAATTTAATAAAAAG
* *
63989769 TATAAAAAATATTTAAAATTTACTAAAAAG
1 TATAAAAATTATTTAAAATTTAATAAAAAG
63989799 TAGTAAAAAT
1 TA-TAAAAAT
63989809 ATAAATAATT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
28 10 0.30
29 15 0.45
30 2 0.06
31 6 0.18
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.34
Consensus pattern (30 bp):
TATAAAAATTATTTAAAATTTAATAAAAAG
Found at i:63989850 original size:20 final size:21
Alignment explanation
Indices: 63989827--63989865 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
63989817 TTGTAAATTT
63989827 TTATAAAAATCAT-AAAAAAA
1 TTATAAAAATCATCAAAAAAA
*
63989847 TTATAAAACTCATCAAAAA
1 TTATAAAAATCATCAAAAA
63989866 GGCCCTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.64, C:0.10, G:0.00, T:0.26
Consensus pattern (21 bp):
TTATAAAAATCATCAAAAAAA
Found at i:63990072 original size:19 final size:20
Alignment explanation
Indices: 63990025--63990079 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
63990015 TTTTGGTATG
*
63990025 ACAATTTTTATAATTCTTTT
1 ACAATTTTTATATTTCTTTT
*
63990045 ACAAATTTTATATTTC-TTT
1 ACAATTTTTATATTTCTTTT
*
63990064 ACATTTTTTATCATTT
1 ACAATTTTTAT-ATTT
63990080 TATTATGACT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 12 0.40
20 18 0.60
ACGTcount: A:0.29, C:0.11, G:0.00, T:0.60
Consensus pattern (20 bp):
ACAATTTTTATATTTCTTTT
Found at i:63993347 original size:23 final size:23
Alignment explanation
Indices: 63993321--63993374 Score: 56
Period size: 24 Copynumber: 2.3 Consensus size: 23
63993311 AAGCTCTATT
*
63993321 GAGCTGAAACGGTAAACT-TTGAC
1 GAGCTGAAACAGTAAACTCTT-AC
* *
63993344 GAGCTAAAAACAGTAAGCTCTTAC
1 GAGCT-GAAACAGTAAACTCTTAC
63993368 GAGCTGA
1 GAGCTGA
63993375 TATATCGGTA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
23 6 0.24
24 17 0.68
25 2 0.08
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.20
Consensus pattern (23 bp):
GAGCTGAAACAGTAAACTCTTAC
Found at i:63993359 original size:24 final size:24
Alignment explanation
Indices: 63993327--63993372 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
63993317 TATTGAGCTG
*
63993327 AAACGGTAAACT-TTGACGAGCTAA
1 AAACAGTAAACTCTT-ACGAGCTAA
*
63993351 AAACAGTAAGCTCTTACGAGCT
1 AAACAGTAAACTCTTACGAGCT
63993373 GATATATCGG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 17 0.89
25 2 0.11
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.22
Consensus pattern (24 bp):
AAACAGTAAACTCTTACGAGCTAA
Found at i:63994978 original size:3 final size:3
Alignment explanation
Indices: 63994970--63995012 Score: 79
Period size: 3 Copynumber: 14.7 Consensus size: 3
63994960 CTCATTCACA
63994970 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA- AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
63995013 AACATAGAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 37 0.95
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:63996910 original size:15 final size:16
Alignment explanation
Indices: 63996888--63996925 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
63996878 TTCCAATTCG
63996888 AATAATTT-TTTGAAA
1 AATAATTTCTTTGAAA
*
63996903 AGTAATTTTCTTTGAAA
1 AATAA-TTTCTTTGAAA
63996920 AATAAT
1 AATAAT
63996926 AAAATTTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 3
0.79 0.08 0.12
Matches are distributed among these distances:
15 4 0.21
16 4 0.21
17 11 0.58
ACGTcount: A:0.45, C:0.03, G:0.08, T:0.45
Consensus pattern (16 bp):
AATAATTTCTTTGAAA
Found at i:64001344 original size:20 final size:19
Alignment explanation
Indices: 64001321--64001369 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
64001311 AACCATTTTT
64001321 AAAATTTTAAAATTATATAA
1 AAAATTTTAAAATTATA-AA
* *
64001341 AAAATCATAAAAATTATAAA
1 AAAAT-TTTAAAATTATAAA
*
64001361 CAAATTTTA
1 AAAATTTTA
64001370 TAAAAATATT
Statistics
Matches: 23, Mismatches: 5, Indels: 3
0.74 0.16 0.10
Matches are distributed among these distances:
19 2 0.09
20 11 0.48
21 10 0.43
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (19 bp):
AAAATTTTAAAATTATAAA
Found at i:64001404 original size:18 final size:18
Alignment explanation
Indices: 64001363--64001404 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
64001353 ATTATAAACA
*
64001363 AATTTTATAAAAATATTT
1 AATTTTATAAAAAAATTT
*
64001381 ATTTTTA-AAAAAAATTAT
1 AATTTTATAAAAAAATT-T
64001399 AATTTT
1 AATTTT
64001405 TTATTAAAGA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
AATTTTATAAAAAAATTT
Found at i:64006833 original size:21 final size:22
Alignment explanation
Indices: 64006788--64006833 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
64006778 AAATGAGAGC
* *
64006788 AAACAGTGGGAAAACAATAGCA
1 AAACAGTGGAAAAACAACAGCA
64006810 AAACA-TGGAAAAACAACAGCA
1 AAACAGTGGAAAAACAACAGCA
64006831 AAA
1 AAA
64006834 TAGTAGAGGC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.61, C:0.15, G:0.17, T:0.07
Consensus pattern (22 bp):
AAACAGTGGAAAAACAACAGCA
Found at i:64007230 original size:26 final size:25
Alignment explanation
Indices: 64007175--64007246 Score: 81
Period size: 26 Copynumber: 2.8 Consensus size: 25
64007165 TCTAATCCTT
* * *
64007175 ATTTTACCCCTAGCAAAATTTGACA
1 ATTTTACCCTTGGTAAAATTTGACA
*
64007200 ATTTTACCCTTGGTAAAATCTTGACG
1 ATTTTACCCTTGGTAAAAT-TTGACA
* *
64007226 ATTTTGCCATTGGTAAAATTT
1 ATTTTACCCTTGGTAAAATTT
64007247 CAAGAAAATA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
25 18 0.45
26 22 0.55
ACGTcount: A:0.31, C:0.18, G:0.12, T:0.39
Consensus pattern (25 bp):
ATTTTACCCTTGGTAAAATTTGACA
Found at i:64013628 original size:30 final size:30
Alignment explanation
Indices: 64013594--64013655 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
64013584 ATATTATTAT
* *
64013594 AATAAATAAAGTAAATAAAAGAAA-TAAAAG
1 AATAAACAAA-TAAATAAAAGAAAGGAAAAG
64013624 AATAAACAAATAAATAAAAGAAAGGAAAAG
1 AATAAACAAATAAATAAAAGAAAGGAAAAG
64013654 AA
1 AA
64013656 ACAAAAGAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 13 0.45
30 16 0.55
ACGTcount: A:0.74, C:0.02, G:0.11, T:0.13
Consensus pattern (30 bp):
AATAAACAAATAAATAAAAGAAAGGAAAAG
Found at i:64013629 original size:8 final size:9
Alignment explanation
Indices: 64013597--64013664 Score: 57
Period size: 9 Copynumber: 7.2 Consensus size: 9
64013587 TTATTATAAT
64013597 AAAT-AAAG
1 AAATAAAAG
64013605 TAAATAAAAG
1 -AAATAAAAG
64013615 AAATAAAAG
1 AAATAAAAG
* *
64013624 AATAAACAAAT
1 AA-ATA-AAAG
64013635 AAATAAAAG
1 AAATAAAAG
*
64013644 AAAGGAAAAG
1 AAA-TAAAAG
*
64013654 AAACAAAAG
1 AAATAAAAG
64013663 AA
1 AA
64013665 CAGAGAAGGA
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
9 28 0.57
10 16 0.33
11 5 0.10
ACGTcount: A:0.75, C:0.03, G:0.12, T:0.10
Consensus pattern (9 bp):
AAATAAAAG
Found at i:64019574 original size:48 final size:48
Alignment explanation
Indices: 64019514--64019728 Score: 201
Period size: 46 Copynumber: 4.6 Consensus size: 48
64019504 AAGCTGACGC
*
64019514 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCAAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCGATG
* * * *** * * *
64019562 TATGTCCCAGACATGTCTTACATTAGC-TCT-CGGCTCAATGTCAATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCGATG
* * *
64019608 CATGTCCCAGACATGTCTTACACTGGCTTGTATATCTCGAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCGATG
* * * *
64019656 TATGTCCCAGTCATGTCTTACAC-AGGCTCT-CATAATGT---GGCCGATG
1 CATGTCCCAGACATGTCTTACACTA-GCT-TGTAT-ATCTCAAGGCCGATG
64019702 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
64019729 ACACATATCA
Statistics
Matches: 131, Mismatches: 30, Indels: 14
0.75 0.17 0.08
Matches are distributed among these distances:
46 64 0.49
47 5 0.04
48 58 0.44
49 4 0.03
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCGATG
Found at i:64019737 original size:94 final size:93
Alignment explanation
Indices: 64019514--64019728 Score: 292
Period size: 94 Copynumber: 2.3 Consensus size: 93
64019504 AAGCTGACGC
*
64019514 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCAAGGCCGATGTATGTCCCAGACATGTC
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCGATGTATGTCCCAGACATGTC
* *
64019579 TTACATTAGCTCTCGGCTCAATGTCAATG
66 TTACATCAGCTCTC-GATCAATGTCAATG
* * * *
64019608 CATGTCCCAGACATGTCTTACACTGGCTTGTATATCTCGAGGCTGATGTATGTCCCAGTCATGTC
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCGATGTATGTCCCAGACATGTC
*
64019673 TTACA-CAGGCTCTC-AT-AATGTGGCCGATG
66 TTACATCA-GCTCTCGATCAATGT---CAATG
64019702 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
64019729 ACACATATCA
Statistics
Matches: 108, Mismatches: 9, Indels: 8
0.86 0.07 0.06
Matches are distributed among these distances:
91 5 0.05
92 1 0.01
93 1 0.01
94 101 0.94
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (93 bp):
CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCGATGTATGTCCCAGACATGTC
TTACATCAGCTCTCGATCAATGTCAATG
Found at i:64022980 original size:15 final size:17
Alignment explanation
Indices: 64022950--64022981 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
64022940 CTCTTTTTGT
64022950 AGTAGCCTAGTCATCGA
1 AGTAGCCTAGTCATCGA
64022967 AGTAG-CTA-TCATCGA
1 AGTAGCCTAGTCATCGA
64022982 GAACCCTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (17 bp):
AGTAGCCTAGTCATCGA
Found at i:64027549 original size:48 final size:47
Alignment explanation
Indices: 64027474--64027636 Score: 161
Period size: 46 Copynumber: 3.5 Consensus size: 47
64027464 AAACTGACGC
*
64027474 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTT-TATATCTCGAGGCCGATG
* * * ** * *
64027522 CATGTCCTAGACATGTCTTACATTAGCTCT-CGTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTTATATCTCGAGGCCGATG
* * * * * *
64027568 CATATCCCAGACTTGTCTTACACTGGCTCTCATA-AT-GTGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCT-TTATATCTCGAGGCCGATG
64027614 CATGTCCCAGACATGTCTTACAC
1 CATGTCCCAGACATGTCTTACAC
64027637 AAGCACACAT
Statistics
Matches: 90, Mismatches: 23, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
46 63 0.70
47 2 0.02
48 25 0.28
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTTTATATCTCGAGGCCGATG
Found at i:64031553 original size:26 final size:26
Alignment explanation
Indices: 64031517--64031598 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
64031507 TGAAATTCCA
64031517 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
64031543 ATCATGAAACATTTACGTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
64031569 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
64031595 ATCA
1 ATCA
64031599 ATTTGTATCA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.37, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:64033559 original size:15 final size:17
Alignment explanation
Indices: 64033529--64033560 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
64033519 CTCTTTTTGT
64033529 AGTAGCCTAGTCATCGA
1 AGTAGCCTAGTCATCGA
64033546 AGTAG-CTA-TCATCGA
1 AGTAGCCTAGTCATCGA
64033561 GAACCCTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (17 bp):
AGTAGCCTAGTCATCGA
Found at i:64038128 original size:48 final size:47
Alignment explanation
Indices: 64038053--64038215 Score: 161
Period size: 46 Copynumber: 3.5 Consensus size: 47
64038043 AAACTGACGC
*
64038053 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTT-TATATCTCGAGGCCGATG
* * * ** * *
64038101 CATGTCCTAGACATGTCTTACATTAGCTCT-CGTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTTATATCTCGAGGCCGATG
* * * * * *
64038147 CATATCCCAGACTTGTCTTACACTGGCTCTCATA-AT-GTGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCT-TTATATCTCGAGGCCGATG
64038193 CATGTCCCAGACATGTCTTACAC
1 CATGTCCCAGACATGTCTTACAC
64038216 AAGCACACAT
Statistics
Matches: 90, Mismatches: 23, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
46 63 0.70
47 2 0.02
48 25 0.28
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTTTATATCTCGAGGCCGATG
Found at i:64042132 original size:26 final size:26
Alignment explanation
Indices: 64042096--64042177 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
64042086 TGAAATTCCA
64042096 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
64042122 ATCATGAAACATTTACGTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
64042148 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
64042174 ATCA
1 ATCA
64042178 ATTTGTATCA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.37, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:64045906 original size:26 final size:26
Alignment explanation
Indices: 64045862--64045917 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
64045852 TTAATTACAA
* *
64045862 ATTTGTTAAAATTATTAATTAAAAAAT
1 ATTTGTTAAAAATACTAATT-AAAAAT
*
64045889 ATTT-TTAAAAATACTAATTACAAAT
1 ATTTGTTAAAAATACTAATTAAAAAT
64045914 ATTT
1 ATTT
64045918 AATGGTTATA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 9 0.35
26 13 0.50
27 4 0.15
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.45
Consensus pattern (26 bp):
ATTTGTTAAAAATACTAATTAAAAAT
Found at i:64046233 original size:13 final size:13
Alignment explanation
Indices: 64046217--64046256 Score: 71
Period size: 13 Copynumber: 3.1 Consensus size: 13
64046207 TTTAAATCAA
64046217 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
*
64046230 ACTTTTCAAAATC
1 ACTTTTCAAAAGC
64046243 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
64046256 A
1 A
64046257 TTGCCAAACT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.40, C:0.23, G:0.05, T:0.33
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:64046481 original size:76 final size:76
Alignment explanation
Indices: 64046371--64046627 Score: 304
Period size: 76 Copynumber: 3.4 Consensus size: 76
64046361 AGGACGTATA
* * * * *
64046371 CACACATTTAATATTGTCAG-TT-T-CGGCTAGCGTTGGGCACAAATCTTTGTTGGTTAATTCGA
1 CACACATTTAATATCGTCGGTTTATCCGACTAGCGTTGGGCACAAATCTTTGTCGGTTAATCCGA
*
64046433 CTAGTGTTGGG
66 CTAGTGCTGGG
* *
64046444 CACATATTTAATATCGTCGGTTTATCCGACTAGCGTTGGGCACAAATCTTTGTCAGTTAATCCGA
1 CACACATTTAATATCGTCGGTTTATCCGACTAGCGTTGGGCACAAATCTTTGTCGGTTAATCCGA
*
64046509 CTAGTGGTGGG
66 CTAGTGCTGGG
* ** * ** *
64046520 CACACATTTAATATCGTCGGTTTATCTGACTAATGCTGGGCGTAAATCTTTGACGGTTAATCCGA
1 CACACATTTAATATCGTCGGTTTATCCGACTAGCGTTGGGCACAAATCTTTGTCGGTTAATCCGA
64046585 CTAGTGCTGGG
66 CTAGTGCTGGG
* * * * *
64046596 TACACATTTAGTATCGTTGATTTATCCAACTA
1 CACACATTTAATATCGTCGGTTTATCCGACTA
64046628 ACGCTAGATG
Statistics
Matches: 157, Mismatches: 24, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
73 17 0.11
74 2 0.01
75 1 0.01
76 137 0.87
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.35
Consensus pattern (76 bp):
CACACATTTAATATCGTCGGTTTATCCGACTAGCGTTGGGCACAAATCTTTGTCGGTTAATCCGA
CTAGTGCTGGG
Found at i:64046482 original size:40 final size:40
Alignment explanation
Indices: 64046430--64046560 Score: 144
Period size: 40 Copynumber: 3.4 Consensus size: 40
64046420 TTGGTTAATT
*
64046430 CGACTAGTGTTGGGCACATATTTAATATCGTCGGTTTATC
1 CGACTAGTGTTGGGCACAAATTTAATATCGTCGGTTTATC
* * * *
64046470 CGACTAGCGTTGGGCACAAATCT--T-T-GTCAGTTAATC
1 CGACTAGTGTTGGGCACAAATTTAATATCGTCGGTTTATC
* *
64046506 CGACTAGTGGTGGGCACACATTTAATATCGTCGGTTTATC
1 CGACTAGTGTTGGGCACAAATTTAATATCGTCGGTTTATC
* * *
64046546 TGACTAATGCTGGGC
1 CGACTAGTGTTGGGC
64046561 GTAAATCTTT
Statistics
Matches: 73, Mismatches: 14, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
36 28 0.38
37 1 0.01
38 2 0.03
39 1 0.01
40 41 0.56
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.33
Consensus pattern (40 bp):
CGACTAGTGTTGGGCACAAATTTAATATCGTCGGTTTATC
Found at i:64046520 original size:36 final size:36
Alignment explanation
Indices: 64046404--64046595 Score: 150
Period size: 36 Copynumber: 5.1 Consensus size: 36
64046394 CGGCTAGCGT
* * *
64046404 TGGGCACAAATCTTTGTTGGTTAATTCGACTAGTGT
1 TGGGCACAAATCTTTGTCGGTTAATCCGACTAGTGC
* * * * *
64046440 TGGGCACATATTTAATATCGTCGGTTTATCCGACTAGCGT
1 TGGGCACAAATCT--T-T-GTCGGTTAATCCGACTAGTGC
* *
64046480 TGGGCACAAATCTTTGTCAGTTAATCCGACTAGTGG
1 TGGGCACAAATCTTTGTCGGTTAATCCGACTAGTGC
* * * * *
64046516 TGGGCACACATTTAATATCGTCGGTTTATCTGACTAATGC
1 TGGGCACAAATCT--T-T-GTCGGTTAATCCGACTAGTGC
** *
64046556 TGGGCGTAAATCTTTGACGGTTAATCCGACTAGTGC
1 TGGGCACAAATCTTTGTCGGTTAATCCGACTAGTGC
64046592 TGGG
1 TGGG
64046596 TACACATTTA
Statistics
Matches: 121, Mismatches: 27, Indels: 16
0.74 0.16 0.10
Matches are distributed among these distances:
36 60 0.50
37 2 0.02
38 4 0.03
39 2 0.02
40 53 0.44
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (36 bp):
TGGGCACAAATCTTTGTCGGTTAATCCGACTAGTGC
Found at i:64047637 original size:79 final size:79
Alignment explanation
Indices: 64047502--64047647 Score: 256
Period size: 79 Copynumber: 1.8 Consensus size: 79
64047492 ATGGTTTGGG
* * * *
64047502 ACACGGTCCACTTACACGACCGTGTGTCTTATTGTCTTTAGGTGCAGGTTTTACACAGCTTGCGA
1 ACACGATCCACTTACACGACCGTGTGTCATATTGTCTTTAGATGCAGGTTTCACACAGCTTGCGA
64047567 CATGGATGTGTGAC
66 CATGGATGTGTGAC
64047581 ACACGATCCACTTACACGACCGTGTGTCATATTGTCTTTAGATGCAGGTTTCACACAGCTTGCGA
1 ACACGATCCACTTACACGACCGTGTGTCATATTGTCTTTAGATGCAGGTTTCACACAGCTTGCGA
64047646 CA
66 CA
64047648 CGGCCGTGTG
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
79 63 1.00
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.30
Consensus pattern (79 bp):
ACACGATCCACTTACACGACCGTGTGTCATATTGTCTTTAGATGCAGGTTTCACACAGCTTGCGA
CATGGATGTGTGAC
Found at i:64049881 original size:29 final size:30
Alignment explanation
Indices: 64049830--64049898 Score: 79
Period size: 29 Copynumber: 2.3 Consensus size: 30
64049820 GTCTATATTT
* *
64049830 TTTTATGATTTTTAAATGATTAAATTA-AA
1 TTTTATTATTTTTAAATGATTAAAATATAA
*
64049859 TTTTATTATTTTTAAGA-GGTTAAAATATAA
1 TTTTATTATTTTTAA-ATGATTAAAATATAA
*
64049889 TTTTACTATT
1 TTTTATTATT
64049899 ACTAATTTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
29 22 0.65
30 12 0.35
ACGTcount: A:0.38, C:0.01, G:0.07, T:0.54
Consensus pattern (30 bp):
TTTTATTATTTTTAAATGATTAAAATATAA
Found at i:64066608 original size:19 final size:20
Alignment explanation
Indices: 64066570--64066611 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
64066560 CAAGCGTTTA
*
64066570 TTTTAAAAATATTCATATTAT
1 TTTTAAAAATA-TAATATTAT
64066591 TTTTAAAAATA-AATATTAT
1 TTTTAAAAATATAATATTAT
64066610 TT
1 TT
64066612 ATATATTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 9 0.45
21 11 0.55
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (20 bp):
TTTTAAAAATATAATATTAT
Found at i:64067291 original size:30 final size:31
Alignment explanation
Indices: 64067228--64067292 Score: 80
Period size: 30 Copynumber: 2.1 Consensus size: 31
64067218 CAAAATGGTT
*
64067228 ATTGAACTATTCAAAAGTTATAATTTAAGTC
1 ATTGAACTATTCAAAAGTTATAATTTAAATC
* *
64067259 ATTGAGCTATT-AAAATGTT-TTATTTAAATC
1 ATTGAACTATTCAAAA-GTTATAATTTAAATC
64067289 ATTG
1 ATTG
64067293 GGTTGTAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
30 17 0.57
31 13 0.43
ACGTcount: A:0.38, C:0.08, G:0.11, T:0.43
Consensus pattern (31 bp):
ATTGAACTATTCAAAAGTTATAATTTAAATC
Found at i:64067985 original size:7 final size:7
Alignment explanation
Indices: 64067973--64067998 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
64067963 TTTTATAAAT
64067973 ATTTTAA
1 ATTTTAA
64067980 ATTTTAA
1 ATTTTAA
64067987 ATTTTAA
1 ATTTTAA
64067994 ATTTT
1 ATTTT
64067999 TTGTAATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (7 bp):
ATTTTAA
Found at i:64069170 original size:14 final size:16
Alignment explanation
Indices: 64069148--64069183 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
64069138 TAGTTTCCTC
*
64069148 TATTTTTTTTA-AATT
1 TATTTTTTTAATAATT
64069163 TATTTTTTTAATAATT
1 TATTTTTTTAATAATT
64069179 TATTT
1 TATTT
64069184 GATTGAATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.53
16 9 0.47
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (16 bp):
TATTTTTTTAATAATT
Found at i:64071921 original size:117 final size:117
Alignment explanation
Indices: 64071713--64071923 Score: 318
Period size: 117 Copynumber: 1.8 Consensus size: 117
64071703 TTTGATTTGT
** *
64071713 TGGTTATTTGTGGTTTATTATTGCAATTTCAATGTCACAATGTAGGATTTGTTTTGTCGATTTGT
1 TGGTTATTTGTAATTTATTATTGCAATTTCAATGCCACAATGTAGGATTTGTTTTGTCGATTTGT
*
64071778 GATGCAAAAGTGGTCCCGATGTTGTTGATAAAGCTATTGTTAAAATTGTAGA
66 GATGCAAAAGTGGTCCCGATGATGTTGATAAAGCTATTGTTAAAATTGTAGA
* *
64071830 TGGTTATTTGTAATTTATTATTGCAATTTCAGTGCCACAATGTAAGG-TTTGTTTTGTCTATTTG
1 TGGTTATTTGTAATTTATTATTGCAATTTCAATGCCACAATGT-AGGATTTGTTTTGTCGATTTG
* *
64071894 TGATGCGACAA-TGGTCCCGGTGATGTTGAT
65 TGATGC-AAAAGTGGTCCCGATGATGTTGAT
64071924 TTCTGTTACC
Statistics
Matches: 84, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
117 78 0.93
118 6 0.07
ACGTcount: A:0.24, C:0.10, G:0.23, T:0.43
Consensus pattern (117 bp):
TGGTTATTTGTAATTTATTATTGCAATTTCAATGCCACAATGTAGGATTTGTTTTGTCGATTTGT
GATGCAAAAGTGGTCCCGATGATGTTGATAAAGCTATTGTTAAAATTGTAGA
Found at i:64078685 original size:16 final size:16
Alignment explanation
Indices: 64078664--64078702 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
64078654 TTTTTGGTTG
*
64078664 GTATAGAGTGGATGGT
1 GTATAGAGTGAATGGT
*
64078680 GTATAGGGTGAATGGT
1 GTATAGAGTGAATGGT
64078696 GTATAGA
1 GTATAGA
64078703 CTAATCATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.28, C:0.00, G:0.41, T:0.31
Consensus pattern (16 bp):
GTATAGAGTGAATGGT
Found at i:64079110 original size:211 final size:212
Alignment explanation
Indices: 64078727--64079149 Score: 744
Period size: 211 Copynumber: 2.0 Consensus size: 212
64078717 TTATAAAGTG
*
64078727 CATTTATCCAAATTGCAATGTGGAAATCATATGCTTAAATAATCAAATTTGTCCTTTTAGTTTTA
1 CATTTATCCAAATTGCAATGTGGAAATCATATGCTTAAATAATCAAATTTGTCCTTTTAGTCTTA
*
64078792 TGTTTATTGTCACTGCATTATTTATTAAGCTAAATTAAATTAGGCATAAACAACAAATATTGGTC
66 TGTTTATTGTCACTGCATTATTTACTAAGCTAAATTAAATTAGGCATAAACAACAAATATTGGTC
64078857 ATTACTTCCAAGCATAATGTTAAATTACATAAAAAAAACAACCAATATTGATCAATCAACATTTG
131 ATTACTTCCAAGCATAATGTTAAATTACATAAAAAAAACAACCAATATTGATCAATCAACATTTG
64078922 CAATTGCTAGCTGCATA
196 CAATTGCTAGCTGCATA
*
64078939 CATTTATCC-AATTGCAATAG-GGAAATCATATGCTTAAATGATCAAATTTGTCCTTTTAGTCTT
1 CATTTATCCAAATTGCAAT-GTGGAAATCATATGCTTAAATAATCAAATTTGTCCTTTTAGTCTT
* *
64079002 ATGTTTATTGTCATTGCATTATTTACTAAG-TAAATTAAATTAGGCATAAATAACAAATATTGGT
65 ATGTTTATTGTCACTGCATTATTTACTAAGCTAAATTAAATTAGGCATAAACAACAAATATTGGT
* *
64079066 CATTACTTCGAAGCATAATGTTAAATTACATAAAAAACAACAACCAATATTGGTCAATCAACATT
130 CATTACTTCCAAGCATAATGTTAAATTACATAAAAAA-AACAACCAATATTGATCAATCAACATT
64079131 TGCAATTGCTAGCTGCATA
194 TGCAATTGCTAGCTGCATA
64079150 TGCCTCTTAC
Statistics
Matches: 202, Mismatches: 7, Indels: 5
0.94 0.03 0.02
Matches are distributed among these distances:
210 69 0.34
211 123 0.61
212 10 0.05
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.36
Consensus pattern (212 bp):
CATTTATCCAAATTGCAATGTGGAAATCATATGCTTAAATAATCAAATTTGTCCTTTTAGTCTTA
TGTTTATTGTCACTGCATTATTTACTAAGCTAAATTAAATTAGGCATAAACAACAAATATTGGTC
ATTACTTCCAAGCATAATGTTAAATTACATAAAAAAAACAACCAATATTGATCAATCAACATTTG
CAATTGCTAGCTGCATA
Found at i:64080258 original size:17 final size:17
Alignment explanation
Indices: 64080238--64080283 Score: 58
Period size: 16 Copynumber: 2.7 Consensus size: 17
64080228 GAATGCTAAC
*
64080238 GATTTAGGGATTTTTAA
1 GATTTAGGGATTTTAAA
*
64080255 GATTTA-GGAATTTAAA
1 GATTTAGGGATTTTAAA
64080271 GATTTTAGGGATT
1 GA-TTTAGGGATT
64080284 CAATAAAGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
16 10 0.42
17 10 0.42
18 4 0.17
ACGTcount: A:0.33, C:0.00, G:0.24, T:0.43
Consensus pattern (17 bp):
GATTTAGGGATTTTAAA
Found at i:64087915 original size:48 final size:52
Alignment explanation
Indices: 64087829--64087933 Score: 146
Period size: 48 Copynumber: 2.1 Consensus size: 52
64087819 CCCTACTAAT
*
64087829 TTATATAAAATTATCCAATTTAATGCTAGCTTTAACCTTACCACCCTTTTATAG
1 TTATATAAAATTATCCAATTTAA--CTAGCTTTAACCTTACCACCCTCTTATAG
*
64087883 TTATAT-AAATTATCCAATTTAA-T-GC-TTAACCTTACCGCCCTCTTATAG
1 TTATATAAAATTATCCAATTTAACTAGCTTTAACCTTACCACCCTCTTATAG
64087931 TTA
1 TTA
64087934 GGGGTGGCAT
Statistics
Matches: 49, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
48 24 0.49
49 2 0.04
50 1 0.02
53 16 0.33
54 6 0.12
ACGTcount: A:0.32, C:0.21, G:0.06, T:0.41
Consensus pattern (52 bp):
TTATATAAAATTATCCAATTTAACTAGCTTTAACCTTACCACCCTCTTATAG
Found at i:64088032 original size:13 final size:15
Alignment explanation
Indices: 64088014--64088045 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
64088004 TCATTTTTGG
64088014 TTTTTTA-TAT-AAT
1 TTTTTTATTATGAAT
64088027 TTTTTTATTATGAAT
1 TTTTTTATTATGAAT
64088042 TTTT
1 TTTT
64088046 AAACTTAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 7 0.41
14 3 0.18
15 7 0.41
ACGTcount: A:0.25, C:0.00, G:0.03, T:0.72
Consensus pattern (15 bp):
TTTTTTATTATGAAT
Found at i:64094221 original size:18 final size:18
Alignment explanation
Indices: 64094198--64094290 Score: 150
Period size: 18 Copynumber: 5.2 Consensus size: 18
64094188 CCCATCTACT
*
64094198 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
*
64094216 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
64094234 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
* *
64094252 GTATACGTGAATAGTGCT
1 GTATACGTGAATAGTACC
64094270 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
64094288 GTA
1 GTA
64094291 AACGGTCGTA
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 68 1.00
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:64094250 original size:36 final size:36
Alignment explanation
Indices: 64094198--64094290 Score: 168
Period size: 36 Copynumber: 2.6 Consensus size: 36
64094188 CCCATCTACT
*
64094198 GTATACGTGAACAGTACCGTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
*
64094234 GTATACGTGAATAGTACCGTATACGTGAATAGTGCT
1 GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
64094270 GTATACGTGAATAGTACCGTA
1 GTATACGTGAATAGTACCGTA
64094291 AACGGTCGTA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
36 55 1.00
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (36 bp):
GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
Found at i:64102220 original size:21 final size:21
Alignment explanation
Indices: 64102196--64102236 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
64102186 ATTTATGAAA
64102196 CTACTTACTTCCATCTCAAAC
1 CTACTTACTTCCATCTCAAAC
64102217 CTACTTACTTCCATCTCAAA
1 CTACTTACTTCCATCTCAAA
64102237 AAAGTAACTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.29, C:0.37, G:0.00, T:0.34
Consensus pattern (21 bp):
CTACTTACTTCCATCTCAAAC
Found at i:64102687 original size:30 final size:30
Alignment explanation
Indices: 64102651--64102708 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
64102641 CAATTTAACA
64102651 AGCAAATG-CCTCTAAAATAATAACAAAATT
1 AGCAAATGTCCT-TAAAATAATAACAAAATT
* *
64102681 AGCAAATGTCGTTAAAATAATAATAAAA
1 AGCAAATGTCCTTAAAATAATAACAAAA
64102709 ATTAATAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 23 0.92
31 2 0.08
ACGTcount: A:0.55, C:0.12, G:0.09, T:0.24
Consensus pattern (30 bp):
AGCAAATGTCCTTAAAATAATAACAAAATT
Found at i:64103134 original size:29 final size:29
Alignment explanation
Indices: 64103102--64103184 Score: 67
Period size: 25 Copynumber: 3.1 Consensus size: 29
64103092 CACTTTACTT
64103102 TTAATTCCAATAATTTACTCTTTCTGAAA
1 TTAATTCCAATAATTTACTCTTTCTGAAA
* * *
64103131 TTAAGTT----TAA-TCACT-TTACT---T
1 TTAA-TTCCAATAATTTACTCTTTCTGAAA
64103152 TTAATTCCAATAATTTACTCTTTCTGAAA
1 TTAATTCCAATAATTTACTCTTTCTGAAA
64103181 TTAA
1 TTAA
64103185 GTCTACTCTA
Statistics
Matches: 38, Mismatches: 6, Indels: 20
0.59 0.09 0.31
Matches are distributed among these distances:
20 2 0.05
21 4 0.11
24 7 0.18
25 8 0.21
26 7 0.18
29 8 0.21
30 2 0.05
ACGTcount: A:0.34, C:0.16, G:0.04, T:0.47
Consensus pattern (29 bp):
TTAATTCCAATAATTTACTCTTTCTGAAA
Found at i:64103141 original size:50 final size:50
Alignment explanation
Indices: 64103086--64103186 Score: 202
Period size: 50 Copynumber: 2.0 Consensus size: 50
64103076 CCTTTTAAAT
64103086 TTTAATCACTTTACTTTTAATTCCAATAATTTACTCTTTCTGAAATTAAG
1 TTTAATCACTTTACTTTTAATTCCAATAATTTACTCTTTCTGAAATTAAG
64103136 TTTAATCACTTTACTTTTAATTCCAATAATTTACTCTTTCTGAAATTAAG
1 TTTAATCACTTTACTTTTAATTCCAATAATTTACTCTTTCTGAAATTAAG
64103186 T
1 T
64103187 CTACTCTATA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.32, C:0.16, G:0.04, T:0.49
Consensus pattern (50 bp):
TTTAATCACTTTACTTTTAATTCCAATAATTTACTCTTTCTGAAATTAAG
Found at i:64109258 original size:27 final size:28
Alignment explanation
Indices: 64109202--64109260 Score: 68
Period size: 27 Copynumber: 2.1 Consensus size: 28
64109192 AATTATTAAT
* *
64109202 TTAATTCTATAATTTAATTTAATAACTA
1 TTAATTCTATAATGTAATTTAATAAATA
*
64109230 TTAATTTTA-AATGTAATTATAA-AAATA
1 TTAATTCTATAATGTAATT-TAATAAATA
64109257 TTAA
1 TTAA
64109261 AATGATTAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 16 0.59
28 11 0.41
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.47
Consensus pattern (28 bp):
TTAATTCTATAATGTAATTTAATAAATA
Found at i:64109308 original size:22 final size:21
Alignment explanation
Indices: 64109248--64109310 Score: 63
Period size: 22 Copynumber: 2.9 Consensus size: 21
64109238 AAATGTAATT
64109248 ATAAAAATATTAAAATGATTAAA
1 ATAAAAATATTAAAA--ATTAAA
* * *
64109271 ATAAAAAAATAAAAAATTAAT
1 ATAAAAATATTAAAAATTAAA
*
64109292 TTGAAAAATATTAAAAATT
1 AT-AAAAATATTAAAAATT
64109311 TGCATCAATT
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
21 6 0.18
22 14 0.42
23 13 0.39
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (21 bp):
ATAAAAATATTAAAAATTAAA
Found at i:64118943 original size:47 final size:48
Alignment explanation
Indices: 64118830--64119149 Score: 199
Period size: 46 Copynumber: 6.8 Consensus size: 48
64118820 TCATTTGTGT
64118830 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATT---ATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG---CATTGAAATGAGA
* * *
64118876 GCCAGTGTAGGACCACGTCTGGGACATGGCATCGGCATTGAAATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAAATGAGA
* * * * **
64118924 GCTATTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCGAGTTGTA-A
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAAATG-AGA
* * ** *
64118970 GCTAGTGTAAGA-CATGTTTGGGACAT-GCATCAGC-TACAAAATGTG-
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-TGAAATGAGA
* * * *
64119015 TC-AGTCTAAGACCATGTTTGGGACATGGCATCGGCA-CGAATACGTGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAA-A--TGAGA
* *
64119064 G-TCAGTGTAAGACCATGTTTGGGACATGGCATCGAC-TTG--ATGGATGA
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAAAT-GA-GA
* ** *
64119111 GCCAGTGTAAGATTATGTCTGGGACATGGCATCGACATT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATT
64119150 ATACCCTATG
Statistics
Matches: 221, Mismatches: 31, Indels: 42
0.75 0.11 0.14
Matches are distributed among these distances:
44 8 0.04
45 24 0.11
46 69 0.31
47 61 0.28
48 27 0.12
50 32 0.14
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAAATGAGA
Found at i:64131651 original size:51 final size:51
Alignment explanation
Indices: 64131575--64131729 Score: 249
Period size: 51 Copynumber: 3.0 Consensus size: 51
64131565 CAGTTTAAAG
64131575 TAGGTGCTTGTCACTAAAGCATTGAAAAGTTATATATATTATGATTTGAAT
1 TAGGTGCTTGTCACTAAAGCATTGAAAAGTTATATATATTATGATTTGAAT
64131626 TAGGTGCTTGTCACTAAAGCATTGAAAAGTTATATATATTATGATTTGAAT
1 TAGGTGCTTGTCACTAAAGCATTGAAAAGTTATATATATTATGATTTGAAT
* * * * *
64131677 TAGGTGCTTGTCAATAAAACATTGAGAATTTATATATATTTGTGATTT-AAT
1 TAGGTGCTTGTCACTAAAGCATTGAAAAGTTATATATA-TTATGATTTGAAT
64131728 TA
1 TA
64131730 TAATTTATGA
Statistics
Matches: 98, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
51 90 0.92
52 8 0.08
ACGTcount: A:0.35, C:0.07, G:0.17, T:0.41
Consensus pattern (51 bp):
TAGGTGCTTGTCACTAAAGCATTGAAAAGTTATATATATTATGATTTGAAT
Found at i:64136733 original size:25 final size:25
Alignment explanation
Indices: 64136699--64136754 Score: 78
Period size: 25 Copynumber: 2.2 Consensus size: 25
64136689 CGGACACACC
*
64136699 ACAGCTCTTATGAACTTCTCGA-TTT
1 ACAGCTCTTATGAACTTC-CCATTTT
*
64136724 ACAGCTCTTATGAGCTTCCCATTTT
1 ACAGCTCTTATGAACTTCCCATTTT
64136749 ACAGCT
1 ACAGCT
64136755 AACATAAGCT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 2 0.07
25 26 0.93
ACGTcount: A:0.23, C:0.27, G:0.12, T:0.38
Consensus pattern (25 bp):
ACAGCTCTTATGAACTTCCCATTTT
Found at i:64136805 original size:25 final size:25
Alignment explanation
Indices: 64136725--64136805 Score: 92
Period size: 25 Copynumber: 3.2 Consensus size: 25
64136715 TCTCGATTTA
* *
64136725 CAGCTCTTATGAGCTTCCCATT-TT
1 CAGCTCTCATGAGCTTCCCGTTATT
** * *
64136749 ACAGCTAACATAAGCTTCCCGATATT
1 -CAGCTCTCATGAGCTTCCCGTTATT
64136775 CAGCTCTCATGAGCTTCCCGTTATT
1 CAGCTCTCATGAGCTTCCCGTTATT
64136800 CAGCTC
1 CAGCTC
64136806 GGAGGAGCTT
Statistics
Matches: 45, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
25 43 0.96
26 2 0.04
ACGTcount: A:0.22, C:0.31, G:0.14, T:0.33
Consensus pattern (25 bp):
CAGCTCTCATGAGCTTCCCGTTATT
Found at i:64136813 original size:25 final size:25
Alignment explanation
Indices: 64136761--64136815 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
64136751 AGCTAACATA
* *
64136761 AGCTTCCCGATATTCAGCTCTCATG
1 AGCTTCCCGATATTCAGCTCGCAGG
* *
64136786 AGCTTCCCGTTATTCAGCTCGGAGG
1 AGCTTCCCGATATTCAGCTCGCAGG
64136811 AGCTT
1 AGCTT
64136816 TCGATTTACA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.18, C:0.29, G:0.22, T:0.31
Consensus pattern (25 bp):
AGCTTCCCGATATTCAGCTCGCAGG
Found at i:64140508 original size:60 final size:61
Alignment explanation
Indices: 64140442--64140589 Score: 201
Period size: 61 Copynumber: 2.4 Consensus size: 61
64140432 TACCATAAAA
64140442 GCTTTCCTGTCTAGAGTTGTGCCACAAA-GGCATCATTTATATCCAAAACTCGCCACAAAG
1 GCTTTCCTGTCTAGAGTTGTGCCACAAATGGCATCATTTATATCCAAAACTCGCCACAAAG
* * * * * **
64140502 GTTTTCCTGTCCAGAGTTGTGCCACAAATGTCATCCTTTATATCTAGTACTCGCCACAAAG
1 GCTTTCCTGTCTAGAGTTGTGCCACAAATGGCATCATTTATATCCAAAACTCGCCACAAAG
*
64140563 GCTTTCATGT-TCAGAGTTGTGCCACAA
1 GCTTTCCTGTCT-AGAGTTGTGCCACAA
64140590 GGCTGTCCTT
Statistics
Matches: 76, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
60 26 0.34
61 50 0.66
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (61 bp):
GCTTTCCTGTCTAGAGTTGTGCCACAAATGGCATCATTTATATCCAAAACTCGCCACAAAG
Found at i:64140578 original size:61 final size:60
Alignment explanation
Indices: 64140371--64140589 Score: 197
Period size: 60 Copynumber: 3.6 Consensus size: 60
64140361 CATTTAGTAA
* * * * * * * * * *
64140371 TCGCAACAAGGGCTTTCCTGTCCAGAGTT-TTCTACAAAGGTTATCTTTTACATTCAATAC
1 TCGCCACAAAGGCTTTCATGTCCAGAGTTGTGCCACAAAGG-CATCATTTATATCCAAAAC
** * * * *
64140431 TTACCATAAAAGCTTTCCTGTCTAGAGTTGTGCCACAAAGGCATCATTTATATCCAAAAC
1 TCGCCACAAAGGCTTTCATGTCCAGAGTTGTGCCACAAAGGCATCATTTATATCCAAAAC
* * * * * **
64140491 TCGCCACAAAGGTTTTCCTGTCCAGAGTTGTGCCACAAATGTCATCCTTTATATCTAGTAC
1 TCGCCACAAAGGCTTTCATGTCCAGAGTTGTGCCACAAA-GGCATCATTTATATCCAAAAC
*
64140552 TCGCCACAAAGGCTTTCATGTTCAGAGTTGTGCCACAA
1 TCGCCACAAAGGCTTTCATGTCCAGAGTTGTGCCACAA
64140590 GGCTGTCCTT
Statistics
Matches: 129, Mismatches: 28, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
60 69 0.53
61 60 0.47
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.32
Consensus pattern (60 bp):
TCGCCACAAAGGCTTTCATGTCCAGAGTTGTGCCACAAAGGCATCATTTATATCCAAAAC
Found at i:64143697 original size:17 final size:18
Alignment explanation
Indices: 64143666--64143699 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
64143656 CCCTAGCCCC
*
64143666 ATTTTTAATGTTCTTTGT
1 ATTTTTAAAGTTCTTTGT
64143684 ATTTTTAAAG-TCTTTG
1 ATTTTTAAAGTTCTTTG
64143700 AAGCATGATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.21, C:0.06, G:0.12, T:0.62
Consensus pattern (18 bp):
ATTTTTAAAGTTCTTTGT
Found at i:64144697 original size:27 final size:27
Alignment explanation
Indices: 64144666--64144717 Score: 104
Period size: 27 Copynumber: 1.9 Consensus size: 27
64144656 AACAGGTAAA
64144666 CTTATGAGTCAATCGATAAGTAAATAG
1 CTTATGAGTCAATCGATAAGTAAATAG
64144693 CTTATGAGTCAATCGATAAGTAAAT
1 CTTATGAGTCAATCGATAAGTAAAT
64144718 CAATGAAGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.31
Consensus pattern (27 bp):
CTTATGAGTCAATCGATAAGTAAATAG
Found at i:64151371 original size:21 final size:21
Alignment explanation
Indices: 64151345--64151386 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
64151335 AACAAAAAGG
64151345 GAAGTGCTAGCTGAATTTCTC
1 GAAGTGCTAGCTGAATTTCTC
64151366 GAAGTGCTAGCTGAATTTCTC
1 GAAGTGCTAGCTGAATTTCTC
64151387 AATAGCCATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (21 bp):
GAAGTGCTAGCTGAATTTCTC
Found at i:64152725 original size:6 final size:6
Alignment explanation
Indices: 64152714--64152812 Score: 198
Period size: 6 Copynumber: 16.5 Consensus size: 6
64152704 ACTAATGTTT
64152714 ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC
1 ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC
64152762 ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC
1 ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC
64152810 ATA
1 ATA
64152813 ACTATGATTA
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 93 1.00
ACGTcount: A:0.51, C:0.16, G:0.00, T:0.33
Consensus pattern (6 bp):
ATATAC
Found at i:64164406 original size:19 final size:19
Alignment explanation
Indices: 64164382--64164429 Score: 51
Period size: 22 Copynumber: 2.4 Consensus size: 19
64164372 GATCAAATAC
*
64164382 AAGAAAATATGGAACTAAA
1 AAGAAAATATGGAAATAAA
*
64164401 AAGAAAGGAATATGGAAATAAG
1 AAG-AA--AATATGGAAATAAA
64164423 AAGAAAA
1 AAGAAAA
64164430 GTTGTCGATA
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
19 5 0.21
20 2 0.08
21 2 0.08
22 15 0.62
ACGTcount: A:0.65, C:0.02, G:0.21, T:0.12
Consensus pattern (19 bp):
AAGAAAATATGGAAATAAA
Found at i:64164414 original size:22 final size:22
Alignment explanation
Indices: 64164387--64164428 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
64164377 AATACAAGAA
*
64164387 AATATGGAACTAAAAAGAAAGG
1 AATATGGAAATAAAAAGAAAGG
*
64164409 AATATGGAAATAAGAAGAAA
1 AATATGGAAATAAAAAGAAA
64164429 AGTTGTCGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.62, C:0.02, G:0.21, T:0.14
Consensus pattern (22 bp):
AATATGGAAATAAAAAGAAAGG
Found at i:64168956 original size:29 final size:29
Alignment explanation
Indices: 64168901--64168958 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
64168891 TGTTTTTTGG
*
64168901 CCCATTTCAATAAATAAAGTTTAAAATGA
1 CCCATTTCAATAAATAAAGTTAAAAATGA
**
64168930 CCCATTTCTGTAAATAAAG-TAAGAAATGA
1 CCCATTTCAATAAATAAAGTTAA-AAATGA
64168959 GTTTTTTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 2 0.08
29 23 0.92
ACGTcount: A:0.47, C:0.14, G:0.10, T:0.29
Consensus pattern (29 bp):
CCCATTTCAATAAATAAAGTTAAAAATGA
Done.