Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 197 of 255
Found at i:65695547 original size:11 final size:11
Alignment explanation
Indices: 65695531--65695574 Score: 70
Period size: 11 Copynumber: 4.0 Consensus size: 11
65695521 AATGTAATCA
65695531 CAATAAAAATG
1 CAATAAAAATG
65695542 CAATAAAAATG
1 CAATAAAAATG
*
65695553 CAATGAAAATG
1 CAATAAAAATG
*
65695564 CAATGAAAATG
1 CAATAAAAATG
65695575 TGTACTTATC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
11 32 1.00
ACGTcount: A:0.59, C:0.09, G:0.14, T:0.18
Consensus pattern (11 bp):
CAATAAAAATG
Found at i:65695666 original size:21 final size:22
Alignment explanation
Indices: 65695620--65695667 Score: 62
Period size: 23 Copynumber: 2.2 Consensus size: 22
65695610 ATGCATGAAT
65695620 ACTACAGGTAAAGCTTAAAATAA
1 ACTACAGGTAAAGCTT-AAATAA
* *
65695643 ACTACAGGTGAAGCTT-ATTAA
1 ACTACAGGTAAAGCTTAAATAA
65695664 ACTA
1 ACTA
65695668 ACTCAATTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 8 0.35
23 15 0.65
ACGTcount: A:0.46, C:0.15, G:0.15, T:0.25
Consensus pattern (22 bp):
ACTACAGGTAAAGCTTAAATAA
Found at i:65695732 original size:14 final size:15
Alignment explanation
Indices: 65695706--65695735 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
65695696 CTGCACAATG
65695706 TTTCTTCCTCCTCCT
1 TTTCTTCCTCCTCCT
65695721 TTTCTT-CTCCTCCT
1 TTTCTTCCTCCTCCT
65695735 T
1 T
65695736 CTTTCATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.00, C:0.43, G:0.00, T:0.57
Consensus pattern (15 bp):
TTTCTTCCTCCTCCT
Found at i:65699144 original size:43 final size:43
Alignment explanation
Indices: 65699007--65699171 Score: 149
Period size: 43 Copynumber: 3.8 Consensus size: 43
65698997 CATAGGATTT
* * *
65699007 TCGATATGTGATTTCGTGTAAGACCATGTCTGGGAC-GTTGGCA
1 TCGATATTTGATTTCTTGTAAGACCATGTCTGGGACAG-AGGCA
* * * **
65699050 T-TA-ATTTGAGATTTATGTGTAAGACCATTTCTGGGACATCGGCA
1 TCGATATTT--GATTTCT-TGTAAGACCATGTCTGGGACAGAGGCA
* *
65699094 TC-ATATTTGATTTCTTGTAAGACCCTGTCGGGGACAGAGGCA
1 TCGATATTTGATTTCTTGTAAGACCATGTCTGGGACAGAGGCA
* * *
65699136 TCGATATTTGATTACATGTAAGACCACGTCTGGGAC
1 TCGATATTTGATTTCTTGTAAGACCATGTCTGGGAC
65699172 TTTGGCATTG
Statistics
Matches: 97, Mismatches: 18, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
41 3 0.03
42 25 0.26
43 40 0.41
44 25 0.26
45 4 0.04
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (43 bp):
TCGATATTTGATTTCTTGTAAGACCATGTCTGGGACAGAGGCA
Found at i:65704997 original size:25 final size:25
Alignment explanation
Indices: 65704969--65705080 Score: 98
Period size: 25 Copynumber: 4.5 Consensus size: 25
65704959 CGCCATACAG
65704969 GCTTTCCAGATAACATGCCACAAAA
1 GCTTTCCAGATAACATGCCACAAAA
* * * *
65704994 GCTTTCTAGATAACATGCAACACAG
1 GCTTTCCAGATAACATGCCACAAAA
* * * *
65705019 GCTATCTAGATAACATGTCACAAAG
1 GCTTTCCAGATAACATGCCACAAAA
* * * *
65705044 GTTTTCCGGATAATATGTCACAAAA
1 GCTTTCCAGATAACATGCCACAAAA
**
65705069 AATTTCCAGATA
1 GCTTTCCAGATA
65705081 TTATGATACA
Statistics
Matches: 70, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 70 1.00
ACGTcount: A:0.38, C:0.21, G:0.14, T:0.26
Consensus pattern (25 bp):
GCTTTCCAGATAACATGCCACAAAA
Found at i:65706980 original size:90 final size:90
Alignment explanation
Indices: 65706839--65707019 Score: 362
Period size: 90 Copynumber: 2.0 Consensus size: 90
65706829 TCACTAGGGT
65706839 TTTATGTTATGTGATTTCGGGTGCTGGTCTAGTACGTCCTACTGGTGGCTGAGTATGCCGGTATA
1 TTTATGTTATGTGATTTCGGGTGCTGGTCTAGTACGTCCTACTGGTGGCTGAGTATGCCGGTATA
65706904 TGTTGCGGTTACTTGACAGCTTGTA
66 TGTTGCGGTTACTTGACAGCTTGTA
65706929 TTTATGTTATGTGATTTCGGGTGCTGGTCTAGTACGTCCTACTGGTGGCTGAGTATGCCGGTATA
1 TTTATGTTATGTGATTTCGGGTGCTGGTCTAGTACGTCCTACTGGTGGCTGAGTATGCCGGTATA
65706994 TGTTGCGGTTACTTGACAGCTTGTA
66 TGTTGCGGTTACTTGACAGCTTGTA
65707019 T
1 T
65707020 GAGCAGGACC
Statistics
Matches: 91, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
90 91 1.00
ACGTcount: A:0.15, C:0.15, G:0.30, T:0.39
Consensus pattern (90 bp):
TTTATGTTATGTGATTTCGGGTGCTGGTCTAGTACGTCCTACTGGTGGCTGAGTATGCCGGTATA
TGTTGCGGTTACTTGACAGCTTGTA
Found at i:65709640 original size:12 final size:12
Alignment explanation
Indices: 65709623--65709649 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
65709613 ATTCCGAAGT
65709623 ATATATATATAC
1 ATATATATATAC
65709635 ATATATATATAC
1 ATATATATATAC
65709647 ATA
1 ATA
65709650 AGTATGCCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATATATATAC
Found at i:65710180 original size:27 final size:28
Alignment explanation
Indices: 65710096--65710193 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
65710086 CATGAGATTG
* * * *
65710096 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
65710125 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
65710153 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
65710180 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
65710194 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:65710204 original size:27 final size:27
Alignment explanation
Indices: 65710124--65710206 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
65710114 TAAATTGTAC
* *
65710124 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
65710152 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
65710179 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
65710206 A
1 A
65710207 CTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:65717027 original size:27 final size:27
Alignment explanation
Indices: 65716995--65717047 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
65716985 TTCTAAGAAG
*
65716995 AAAGAAAAAAG-TTGTTTTGTTCTTTGC
1 AAAG-AAAAAGTTTGTTCTGTTCTTTGC
65717022 AAAGAAAAAGTTTGTTCTGTTCTTTG
1 AAAGAAAAAGTTTGTTCTGTTCTTTG
65717048 GCGAATGAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 6 0.25
27 18 0.75
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.42
Consensus pattern (27 bp):
AAAGAAAAAGTTTGTTCTGTTCTTTGC
Found at i:65718012 original size:27 final size:28
Alignment explanation
Indices: 65717928--65718023 Score: 131
Period size: 27 Copynumber: 3.4 Consensus size: 28
65717918 CATGAGATTG
* * * *
65717928 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
65717957 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
65717985 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
65718012 GCACTGAGTGTG
1 GCACTAAGTGTG
65718024 TGGACTTAAT
Statistics
Matches: 62, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.35
28 22 0.35
29 18 0.29
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:65718038 original size:29 final size:27
Alignment explanation
Indices: 65717928--65718038 Score: 89
Period size: 27 Copynumber: 4.0 Consensus size: 27
65717918 CATGAGATTG
** * *
65717928 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
65717957 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
65717985 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
* *
65718012 GCACTGAGTGTGTGGACTTAA-TATATA
1 GCACTAAGTGTG-CGACTTAATTATATA
65718039 CTTTGAATCA
Statistics
Matches: 71, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
27 28 0.39
28 27 0.38
29 16 0.23
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:65730139 original size:24 final size:27
Alignment explanation
Indices: 65730093--65730141 Score: 77
Period size: 24 Copynumber: 1.9 Consensus size: 27
65730083 ATATTACAGT
65730093 TTGTATATTAAATAAGCTTTAATATAA
1 TTGTATATTAAATAAGCTTTAATATAA
65730120 TTGTAT-TTAAAT-A-CTTTAATAT
1 TTGTATATTAAATAAGCTTTAATAT
65730142 TCATAATCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 9 0.41
25 1 0.05
26 6 0.27
27 6 0.27
ACGTcount: A:0.41, C:0.04, G:0.06, T:0.49
Consensus pattern (27 bp):
TTGTATATTAAATAAGCTTTAATATAA
Found at i:65734792 original size:11 final size:12
Alignment explanation
Indices: 65734764--65734790 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
65734754 TACCTCGATG
65734764 AAAACAGTTATA
1 AAAACAGTTATA
65734776 AAAACAGTTATA
1 AAAACAGTTATA
65734788 AAA
1 AAA
65734791 CAAAGTTGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.63, C:0.07, G:0.07, T:0.22
Consensus pattern (12 bp):
AAAACAGTTATA
Found at i:65745223 original size:28 final size:29
Alignment explanation
Indices: 65745165--65745223 Score: 68
Period size: 27 Copynumber: 2.1 Consensus size: 29
65745155 CTTTTTTTAC
* *
65745165 TTTTGTCATTTCTCTTACATTTGTTTTTT
1 TTTTGTCATTTATCTTACATTTATTTTTT
* *
65745194 TTTTGTC-TTTATCTT-TATTTATTTTAT
1 TTTTGTCATTTATCTTACATTTATTTTTT
65745221 TTT
1 TTT
65745224 ATTTTTTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
27 12 0.46
28 7 0.27
29 7 0.27
ACGTcount: A:0.12, C:0.10, G:0.05, T:0.73
Consensus pattern (29 bp):
TTTTGTCATTTATCTTACATTTATTTTTT
Found at i:65745286 original size:23 final size:21
Alignment explanation
Indices: 65745254--65745310 Score: 60
Period size: 23 Copynumber: 2.6 Consensus size: 21
65745244 AAAAAACTTG
* *
65745254 AAATGTATATTTGAAATGTTTT
1 AAATATATATTTGAAA-ATTTT
*
65745276 ATAATATATATTTTTAAAATTTT
1 A-AATATATA-TTTGAAAATTTT
65745299 AAATATATATTT
1 AAATATATATTT
65745311 TTGAAATTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
21 3 0.10
22 9 0.30
23 12 0.40
24 6 0.20
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (21 bp):
AAATATATATTTGAAAATTTT
Found at i:65745306 original size:22 final size:22
Alignment explanation
Indices: 65745272--65745399 Score: 95
Period size: 22 Copynumber: 5.8 Consensus size: 22
65745262 ATTTGAAATG
65745272 TTTTATAATATATATTTTTAAAA
1 TTTTA-AATATATATTTTTAAAA
*
65745295 TTTTAAATATATATTTTTGAAA
1 TTTTAAATATATATTTTTAAAA
** * * *
65745317 TTATT-TTTCTAAATTTTAAATATTA
1 TT-TTAAATATATATTTTTAA-A--A
65745342 TTTTTAAAT-TAT-TTTTTAAAA
1 -TTTTAAATATATATTTTTAAAA
*
65745363 TTTTAAATAT-TATTTTTTAAA
1 TTTTAAATATATATTTTTAAAA
*
65745384 TATTAAATATAT-TTTT
1 TTTTAAATATATATTTT
65745400 AATAATATAA
Statistics
Matches: 83, Mismatches: 13, Indels: 20
0.72 0.11 0.17
Matches are distributed among these distances:
20 9 0.11
21 23 0.28
22 28 0.34
23 9 0.11
24 6 0.07
25 5 0.06
26 3 0.04
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.59
Consensus pattern (22 bp):
TTTTAAATATATATTTTTAAAA
Found at i:65745356 original size:33 final size:32
Alignment explanation
Indices: 65745284--65745384 Score: 148
Period size: 33 Copynumber: 3.0 Consensus size: 32
65745274 TTATAATATA
*
65745284 TATTTTTAAAATTTTAAATATATATTTTTGAAAT
1 TATTTTTTAAATTTTAAATAT-TATTTTT-AAAT
65745318 TATTTTTCTAAATTTTAAATATTATTTTTAAAT
1 TATTTTT-TAAATTTTAAATATTATTTTTAAAT
65745351 TATTTTTTAAAATTTTAAATATTATTTTTTAAAT
1 TATTTTTT-AAATTTTAAATATTA-TTTTTAAAT
65745385 ATTAAATATA
Statistics
Matches: 63, Mismatches: 1, Indels: 6
0.90 0.01 0.09
Matches are distributed among these distances:
32 1 0.02
33 26 0.41
34 23 0.37
35 13 0.21
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.59
Consensus pattern (32 bp):
TATTTTTTAAATTTTAAATATTATTTTTAAAT
Found at i:65745365 original size:21 final size:20
Alignment explanation
Indices: 65745341--65745399 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 20
65745331 TTTAAATATT
65745341 ATTTTTAAATTATTTTTTAAA
1 ATTTTTAAATTATTTTTT-AA
*
65745362 ATTTTAAATATTATTTTTTAA
1 ATTTTTAA-ATTATTTTTTAA
*
65745383 A-TATTAAATATATTTTT
1 ATTTTTAAAT-TATTTTT
65745400 AATAATATAA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
19 2 0.06
20 11 0.33
21 10 0.30
22 10 0.30
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (20 bp):
ATTTTTAAATTATTTTTTAA
Found at i:65745382 original size:14 final size:13
Alignment explanation
Indices: 65745330--65745388 Score: 58
Period size: 14 Copynumber: 4.9 Consensus size: 13
65745320 TTTTTCTAAA
65745330 TTTTAAATATTAT
1 TTTTAAATATTAT
65745343 TTTT-AA-ATTAT
1 TTTTAAATATTAT
*
65745354 TTTTTAA-A--A-
1 TTTTAAATATTAT
65745363 TTTTAAATATTATT
1 TTTTAAATATTA-T
65745377 TTTTAAATATTA
1 TTTTAAATATTA
65745389 AATATATTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
9 6 0.15
10 2 0.05
11 9 0.23
12 6 0.15
13 4 0.10
14 12 0.31
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (13 bp):
TTTTAAATATTAT
Found at i:65745400 original size:33 final size:33
Alignment explanation
Indices: 65745290--65745401 Score: 102
Period size: 33 Copynumber: 3.3 Consensus size: 33
65745280 TATATATTTT
**
65745290 TAAAATTTTAAATATATATTTTTGAAATTATT-TT
1 TAAAATTTTAAATAT-TATTTTT-AAATTATTAAA
* ***
65745324 TCTAAATTTTAAATATTATTTTTAAATTATTTTT
1 T-AAAATTTTAAATATTATTTTTAAATTATTAAA
65745358 TAAAATTTTAAATATTATTTTTTAAA-TATTAAA
1 TAAAATTTTAAATATTA-TTTTTAAATTATTAAA
* *
65745391 TATATTTTTAA
1 TAAAATTTTAA
65745402 TAATATAAAA
Statistics
Matches: 68, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
33 36 0.53
34 19 0.28
35 13 0.19
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.57
Consensus pattern (33 bp):
TAAAATTTTAAATATTATTTTTAAATTATTAAA
Found at i:65745403 original size:18 final size:21
Alignment explanation
Indices: 65745349--65745399 Score: 77
Period size: 21 Copynumber: 2.4 Consensus size: 21
65745339 TTATTTTTAA
*
65745349 ATTATTTTTTAAAATTTTAAAT
1 ATTATTTTTT-AAATATTAAAT
65745371 ATTATTTTTTAAATATTAAAT
1 ATTATTTTTTAAATATTAAAT
65745392 A-TATTTTT
1 ATTATTTTT
65745400 AATAATATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
20 7 0.25
21 11 0.39
22 10 0.36
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (21 bp):
ATTATTTTTTAAATATTAAAT
Found at i:65745410 original size:20 final size:21
Alignment explanation
Indices: 65745349--65745407 Score: 75
Period size: 21 Copynumber: 2.8 Consensus size: 21
65745339 TTATTTTTAA
*
65745349 ATTATTTTTTAAAATTTTAAAT
1 ATTA-TTTTTAAAATATTAAAT
*
65745371 ATTATTTTTTAAATATTAAAT
1 ATTATTTTTAAAATATTAAAT
65745392 A-TATTTTTAATAATAT
1 ATTATTTTTAA-AATAT
65745408 AAAACATTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 8 0.24
21 21 0.64
22 4 0.12
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (21 bp):
ATTATTTTTAAAATATTAAAT
Found at i:65745539 original size:159 final size:160
Alignment explanation
Indices: 65745362--65745793 Score: 803
Period size: 159 Copynumber: 2.7 Consensus size: 160
65745352 ATTTTTTAAA
* *
65745362 ATTTTAAATATTATTTTTTAAATATTAAATATATTTTTAATAATATAAAACATTTAAATATTTTA
1 ATTTTTAA-ATTACTTTTTAAATATTAAATATATTTTTAATAATATAAAACATTTAAATATTTTA
65745427 AAGATATGACCTTTCAAATTTATTATTAGTTTTATAATATTTTAAATATATATTTGAAATGTTTT
65 AAGATATGACCTTTCAAATTTATTATTAGTTTTATAATATTTTAAATATATATTTGAAATGTTTT
65745492 ATAATATATA-TTTTTTAAATTTTAAATATT
130 ATAATATATAGTTTTTTAAATTTTAAATATT
65745522 ATTTTTAAATTACTTTTTAAATATTAAATATATTTTTAATAATATAAAACATTTAAATATTTTAA
1 ATTTTTAAATTACTTTTTAAATATTAAATATATTTTTAATAATATAAAACATTTAAATATTTTAA
65745587 AGATATGACCTTTCAAATTTATTATTAGTTTTATAATATTTTAAATATATATTTGAAATGTTTTA
66 AGATATGACCTTTCAAATTTATTATTAGTTTTATAATATTTTAAATATATATTTGAAATGTTTTA
65745652 TAATATATATGTTTTTTAAATTTTAAATATT
131 TAATATATA-GTTTTTTAAATTTTAAATATT
65745683 ATTTTTAAATTACTTTTTAAATATTAAATATATTTTTAATAATATAAAACATTTAAATATTTTAA
1 ATTTTTAAATTACTTTTTAAATATTAAATATATTTTTAATAATATAAAACATTTAAATATTTTAA
* *
65745748 AAATATGAACTTTCAAATTTATTATTAGTTTTATAATATTTTAAAT
66 AGATATGACCTTTCAAATTTATTATTAGTTTTATAATATTTTAAAT
65745794 GTCTATTTTT
Statistics
Matches: 266, Mismatches: 4, Indels: 3
0.97 0.01 0.01
Matches are distributed among these distances:
159 130 0.49
160 7 0.03
161 129 0.48
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.52
Consensus pattern (160 bp):
ATTTTTAAATTACTTTTTAAATATTAAATATATTTTTAATAATATAAAACATTTAAATATTTTAA
AGATATGACCTTTCAAATTTATTATTAGTTTTATAATATTTTAAATATATATTTGAAATGTTTTA
TAATATATAGTTTTTTAAATTTTAAATATT
Found at i:65745690 original size:13 final size:14
Alignment explanation
Indices: 65745672--65745708 Score: 53
Period size: 12 Copynumber: 2.9 Consensus size: 14
65745662 GTTTTTTAAA
65745672 TTTTAAATATTA-T
1 TTTTAAATATTACT
65745685 TTTT-AA-ATTACT
1 TTTTAAATATTACT
65745697 TTTTAAATATTA
1 TTTTAAATATTA
65745709 AATATATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
11 4 0.19
12 7 0.33
13 6 0.29
14 4 0.19
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (14 bp):
TTTTAAATATTACT
Found at i:65746276 original size:23 final size:21
Alignment explanation
Indices: 65746242--65746309 Score: 82
Period size: 21 Copynumber: 3.1 Consensus size: 21
65746232 AAAATATTTA
* *
65746242 AATATTTTATATTATTAAAAAT
1 AATATTTAATATT-TAAAAAAT
65746264 ATATATTTAATATTTAAAAAAT
1 A-ATATTTAATATTTAAAAAAT
* *
65746286 AATATTCAAAATTTAAAAAAT
1 AATATTTAATATTTAAAAAAT
65746307 AAT
1 AAT
65746310 TTCAAATATA
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
21 21 0.51
22 9 0.22
23 11 0.27
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.43
Consensus pattern (21 bp):
AATATTTAATATTTAAAAAAT
Found at i:65746280 original size:21 final size:20
Alignment explanation
Indices: 65746256--65746354 Score: 75
Period size: 21 Copynumber: 5.0 Consensus size: 20
65746246 TTTTATATTA
*
65746256 TTAAAAATATATATTTAATAT
1 TTAAAAA-ATATATTTAAAAT
*
65746277 TTAAAAAATAATATTCAAAAT
1 TTAAAAAAT-ATATTTAAAAT
*
65746298 TTAAAAAATA-ATTTCAAA-
1 TTAAAAAATATATTTAAAAT
*
65746316 -T---ATATATATTTAAAATT
1 TTAAAAAATATATTTAAAA-T
65746333 TTAAAAATATATATTATAAAAT
1 TTAAAAA-ATATATT-TAAAAT
65746355 ATTTCAAATA
Statistics
Matches: 61, Mismatches: 7, Indels: 19
0.70 0.08 0.22
Matches are distributed among these distances:
14 4 0.07
15 7 0.11
17 1 0.02
18 1 0.02
19 6 0.10
20 3 0.05
21 26 0.43
22 8 0.13
23 5 0.08
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (20 bp):
TTAAAAAATATATTTAAAAT
Found at i:65746376 original size:23 final size:21
Alignment explanation
Indices: 65746307--65746385 Score: 86
Period size: 23 Copynumber: 3.5 Consensus size: 21
65746297 TTTAAAAAAT
*
65746307 AATTTCAAATATATATATTTAA
1 AATTTTAAA-ATATATATTTAA
65746329 AATTTTAAAAATATATATTATAA
1 AATTTT-AAAATATATATT-TAA
* *
65746352 AATATTTCAAATATACATTTCAA
1 AAT-TTTAAAATATATATTT-AA
65746375 AATTTTAAAAT
1 AATTTTAAAAT
65746386 TAATAATAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
22 22 0.45
23 24 0.49
24 3 0.06
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (21 bp):
AATTTTAAAATATATATTTAA
Found at i:65746399 original size:45 final size:47
Alignment explanation
Indices: 65746299--65746400 Score: 136
Period size: 46 Copynumber: 2.2 Consensus size: 47
65746289 ATTCAAAATT
* * *
65746299 TAAAAAATAATTTCAAATATATATATTTAAAATTTTAAAAATATATAT
1 TAAAAAAT-ATTTCAAATATACATATTCAAAATTTTAAAAATATATAA
* *
65746347 TATAAAATATTTCAAATATACAT-TTCAAAATTTTAAAATTA-ATAA
1 TAAAAAATATTTCAAATATACATATTCAAAATTTTAAAAATATATAA
65746392 TAAAAAATA
1 TAAAAAATA
65746401 AGTAAAATAA
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
45 11 0.23
46 16 0.33
47 14 0.29
48 7 0.15
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (47 bp):
TAAAAAATATTTCAAATATACATATTCAAAATTTTAAAAATATATAA
Found at i:65746468 original size:16 final size:16
Alignment explanation
Indices: 65746444--65746477 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
65746434 AAAAGGGACG
65746444 AAAGTAAAAAAGTAAAA
1 AAAGTAAAAAAG-AAAA
65746461 AAAG-AAAAAAGAAAA
1 AAAGTAAAAAAGAAAA
65746476 AA
1 AA
65746478 GAAGCAGATG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.35
16 7 0.41
17 4 0.24
ACGTcount: A:0.82, C:0.00, G:0.12, T:0.06
Consensus pattern (16 bp):
AAAGTAAAAAAGAAAA
Found at i:65749761 original size:24 final size:24
Alignment explanation
Indices: 65749729--65749788 Score: 77
Period size: 24 Copynumber: 2.5 Consensus size: 24
65749719 ATCTTCTTTG
*
65749729 TCTTCACCTCCACC-CTCGTACTCA
1 TCTTCACCTCAACCGC-CGTACTCA
*
65749753 TCTTCACCTCAACCGCCGTATTCA
1 TCTTCACCTCAACCGCCGTACTCA
*
65749777 TATTCACCTCAA
1 TCTTCACCTCAA
65749789 TCGTCATCTT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
24 31 0.97
25 1 0.03
ACGTcount: A:0.22, C:0.43, G:0.05, T:0.30
Consensus pattern (24 bp):
TCTTCACCTCAACCGCCGTACTCA
Found at i:65752348 original size:94 final size:91
Alignment explanation
Indices: 65752191--65752359 Score: 234
Period size: 92 Copynumber: 1.8 Consensus size: 91
65752181 TATCTGTGCT
*
65752191 GATGCCATGTCCCAAACATGGTCTTACATTGACACATCTCATAGTCGATGCATGTCCCAGACATG
1 GATGCCATGTCCCAAACATGGTCTTACACTGA-ACATCTCATAGTCGATGCATGTCCCAGACATG
65752256 TCTTACACTAACAATCGTCTTAATGCC
65 TCTTACACTAACAATCGTCTTAATGCC
* * *
65752283 GATGCCATGTCCTAAACATGGTCTTACACTG-GC-TCTCATAATGTGGCCGATGCATGTCCTAGA
1 GATGCCATGTCCCAAACATGGTCTTACACTGAACATCTCAT-A-GT---CGATGCATGTCCCAGA
65752346 CATGTCTTACACTA
61 CATGTCTTACACTA
65752360 GCTCACAATA
Statistics
Matches: 68, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
89 6 0.09
90 2 0.03
91 2 0.03
92 29 0.43
94 29 0.43
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (91 bp):
GATGCCATGTCCCAAACATGGTCTTACACTGAACATCTCATAGTCGATGCATGTCCCAGACATGT
CTTACACTAACAATCGTCTTAATGCC
Found at i:65774640 original size:26 final size:28
Alignment explanation
Indices: 65774587--65774650 Score: 69
Period size: 26 Copynumber: 2.3 Consensus size: 28
65774577 TTTATACTTT
* *
65774587 TTTTACTTTTGTCATTTCTCTTACATTTG
1 TTTTA-TTTTGTCATTTATCTTACATTTA
* *
65774616 TTTTTTTTTGTC-TTTATCTT-TATTTA
1 TTTTATTTTGTCATTTATCTTACATTTA
65774642 TTTTATTTT
1 TTTTATTTT
65774651 ATTTTTATTA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
26 12 0.40
27 7 0.23
28 7 0.23
29 4 0.13
ACGTcount: A:0.12, C:0.11, G:0.05, T:0.72
Consensus pattern (28 bp):
TTTTATTTTGTCATTTATCTTACATTTA
Found at i:65774650 original size:27 final size:29
Alignment explanation
Indices: 65774587--65774650 Score: 71
Period size: 27 Copynumber: 2.3 Consensus size: 29
65774577 TTTATACTTT
* * *
65774587 TTTTACTTTTGTCATTTCTCTTACATTTG
1 TTTTATTTTTGTCATTTATCTTACATTTA
*
65774616 TTTT-TTTTTGTC-TTTATCTT-TATTTA
1 TTTTATTTTTGTCATTTATCTTACATTTA
65774642 TTTTATTTT
1 TTTTATTTT
65774651 ATTTTTATTA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
26 8 0.27
27 11 0.37
28 7 0.23
29 4 0.13
ACGTcount: A:0.12, C:0.11, G:0.05, T:0.72
Consensus pattern (29 bp):
TTTTATTTTTGTCATTTATCTTACATTTA
Found at i:65774712 original size:23 final size:21
Alignment explanation
Indices: 65774680--65774736 Score: 60
Period size: 23 Copynumber: 2.6 Consensus size: 21
65774670 AAAAAACTTG
* *
65774680 AAATGTATATTTGAAATGTTTT
1 AAATATATATTTGAAA-ATTTT
*
65774702 ATAATATATATTTTTAAAATTTT
1 A-AATATATA-TTTGAAAATTTT
65774725 AAATATATATTT
1 AAATATATATTT
65774737 TTGAAATTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
21 3 0.10
22 9 0.30
23 12 0.40
24 6 0.20
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (21 bp):
AAATATATATTTGAAAATTTT
Found at i:65774732 original size:22 final size:23
Alignment explanation
Indices: 65774698--65774744 Score: 78
Period size: 22 Copynumber: 2.1 Consensus size: 23
65774688 ATTTGAAATG
65774698 TTTTATAATATATATTTTTAAAA
1 TTTTATAATATATATTTTTAAAA
*
65774721 TTTTA-AATATATATTTTTGAAA
1 TTTTATAATATATATTTTTAAAA
65774743 TT
1 TT
65774745 ATTTTCTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (23 bp):
TTTTATAATATATATTTTTAAAA
Found at i:65774756 original size:34 final size:32
Alignment explanation
Indices: 65774710--65774809 Score: 148
Period size: 34 Copynumber: 3.0 Consensus size: 32
65774700 TTATAATATA
65774710 TATTTTTAAAATTTTAAATATATATTTTTGAAAT
1 TATTTTTAAAATTTTAAATAT-TATTTTT-AAAT
65774744 TATTTTCT-AAATTTTAAATATTATTTTTAAAT
1 TATTTT-TAAAATTTTAAATATTATTTTTAAAT
65774776 TATTTTTTAAAATTTTAAATATTATTTTTTAAAT
1 TA-TTTTTAAAATTTTAAATATTA-TTTTTAAAT
65774810 ATTAATATAT
Statistics
Matches: 62, Mismatches: 0, Indels: 8
0.89 0.00 0.11
Matches are distributed among these distances:
32 7 0.11
33 26 0.42
34 28 0.45
35 1 0.02
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.59
Consensus pattern (32 bp):
TATTTTTAAAATTTTAAATATTATTTTTAAAT
Found at i:65774757 original size:21 final size:21
Alignment explanation
Indices: 65774733--65774776 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
65774723 TTAAATATAT
*
65774733 ATTTTTGAA-ATTATTTTCTAA
1 ATTTTTAAATATTATTTT-TAA
65774754 A-TTTTAAATATTATTTTTAA
1 ATTTTTAAATATTATTTTTAA
65774774 ATT
1 ATT
65774777 ATTTTTTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.59
Consensus pattern (21 bp):
ATTTTTAAATATTATTTTTAA
Found at i:65774789 original size:33 final size:33
Alignment explanation
Indices: 65774698--65774809 Score: 154
Period size: 33 Copynumber: 3.2 Consensus size: 33
65774688 ATTTGAAATG
65774698 TTTTATAATATATATTTTTAAAATTTTAAATATATAT
1 TTTTA-AAT-TAT-TTTTTAAAATTTTAAATAT-TAT
*
65774735 TTTTGAAATTATTTTCT-AAATTTTAAATATTAT
1 TTTT-AAATTATTTTTTAAAATTTTAAATATTAT
65774768 TTTTAAATTATTTTTTAAAATTTTAAATATTATT
1 TTTTAAATTATTTTTTAAAATTTTAAATATTA-T
65774802 TTTTAAAT
1 TTTTAAAT
65774810 ATTAATATAT
Statistics
Matches: 70, Mismatches: 2, Indels: 9
0.86 0.02 0.11
Matches are distributed among these distances:
32 11 0.16
33 22 0.31
34 22 0.31
35 4 0.06
36 3 0.04
37 7 0.10
38 1 0.01
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.59
Consensus pattern (33 bp):
TTTTAAATTATTTTTTAAAATTTTAAATATTAT
Found at i:65774790 original size:21 final size:22
Alignment explanation
Indices: 65774766--65774823 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
65774756 TTTAAATATT
*
65774766 ATTTTTAA-ATTATTTTTTAAA
1 ATTTTAAATATTATTTTTTAAA
65774787 ATTTTAAATATTATTTTTT-AA
1 ATTTTAAATATTATTTTTTAAA
*
65774808 ATATT-AATA-TATTTTT
1 ATTTTAAATATTATTTTT
65774824 AATAATATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.21
20 4 0.12
21 13 0.38
22 10 0.29
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (22 bp):
ATTTTAAATATTATTTTTTAAA
Found at i:65774802 original size:22 final size:20
Alignment explanation
Indices: 65774768--65774823 Score: 71
Period size: 22 Copynumber: 2.8 Consensus size: 20
65774758 TAAATATTAT
65774768 TTTTAA-ATTATTTTTTAAAA
1 TTTTAATATTATTTTTT-AAA
65774788 TTTTAAATATTATTTTTTAAA
1 TTTT-AATATTATTTTTTAAA
*
65774809 TATTAATA-TATTTTT
1 TTTTAATATTATTTTT
65774824 AATAATATAA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
19 7 0.21
20 8 0.24
21 8 0.24
22 10 0.30
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (20 bp):
TTTTAATATTATTTTTTAAA
Found at i:65774807 original size:14 final size:13
Alignment explanation
Indices: 65774755--65774813 Score: 58
Period size: 14 Copynumber: 4.9 Consensus size: 13
65774745 ATTTTCTAAA
65774755 TTTTAAATATTAT
1 TTTTAAATATTAT
65774768 TTTT-AA-ATTAT
1 TTTTAAATATTAT
*
65774779 TTTTTAA-A--A-
1 TTTTAAATATTAT
65774788 TTTTAAATATTATT
1 TTTTAAATATTA-T
65774802 TTTTAAATATTA
1 TTTTAAATATTA
65774814 ATATATTTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
9 6 0.15
10 2 0.05
11 9 0.23
12 6 0.15
13 4 0.10
14 12 0.31
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (13 bp):
TTTTAAATATTAT
Found at i:65774830 original size:20 final size:21
Alignment explanation
Indices: 65774774--65774831 Score: 66
Period size: 21 Copynumber: 2.8 Consensus size: 21
65774764 TTATTTTTAA
*
65774774 ATTATTTTTTAAAATTTTAAAT
1 ATTA-TTTTTAAAATATTAAAT
*
65774796 ATTATTTTTTAAATATT-AAT
1 ATTATTTTTAAAATATTAAAT
65774816 A-TATTTTTAATAATAT
1 ATTATTTTTAA-AATAT
65774832 AAACATTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
19 8 0.25
20 9 0.28
21 11 0.34
22 4 0.12
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
ATTATTTTTAAAATATTAAAT
Found at i:65774941 original size:21 final size:21
Alignment explanation
Indices: 65774879--65774954 Score: 84
Period size: 20 Copynumber: 3.5 Consensus size: 21
65774869 TTATTATTAG
65774879 TTTTATAATATTTTAAATATATA
1 TTTT-TAA-ATTTTAAATATATA
*
65774902 -TTTGAAATGTTTTATAATATATA
1 TTTTTAAA--TTTTA-AATATATA
65774925 TTTTTAAATTTTAAATAT-TA
1 TTTTTAAATTTTAAATATATA
65774945 TTTTTAAATT
1 TTTTTAAATT
65774955 ACTTTTTAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 11
0.78 0.03 0.18
Matches are distributed among these distances:
20 13 0.28
21 7 0.15
22 13 0.28
23 8 0.17
24 6 0.13
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (21 bp):
TTTTTAAATTTTAAATATATA
Found at i:65774984 original size:157 final size:159
Alignment explanation
Indices: 65774787--65775212 Score: 747
Period size: 158 Copynumber: 2.7 Consensus size: 159
65774777 ATTTTTTAAA
* *
65774787 ATTTTAAATATTATTTTTTAAATATT-AATATATTTTTAATAATAT-AAACATTTAAATATTTTA
1 ATTTTTAA-ATTACTTTTTAAATATTAAATATATTTTTAATAATATAAAACATTTAAATATTTTA
65774850 AAGATATGACCTTTCAAATTTATTATTAGTTTTATAATATTTTAAATATATATTTGAAATGTTTT
65 AAGATATGACCTTTCAAATTTATTATTAGTTTTATAATATTTTAAATATATATTTGAAATGTTTT
65774915 ATAATATATA-TTTTTAAATTTTAAATATT
130 ATAATATATATTTTTTAAATTTTAAATATT
65774944 ATTTTTAAATTACTTTTTAAATATTAAATATATTTTTAATAATATAAAACATTTAAATATTTTAA
1 ATTTTTAAATTACTTTTTAAATATTAAATATATTTTTAATAATATAAAACATTTAAATATTTTAA
65775009 AGATATGACCTTTCAAATTTATTATTAG-TTTATAATATTTTAAATATATATTTGAAATGTTTTA
66 AGATATGACCTTTCAAATTTATTATTAGTTTTATAATATTTTAAATATATATTTGAAATGTTTTA
65775073 TAATATATATGTTTTTTAAATTTTAAATATT
131 TAATATATA--TTTTTTAAATTTTAAATATT
65775104 ATTTTTAAATTACTTTTTAAATATTAAATATA-TTTTAATAATATAAAACATTTAAATA-TTTAA
1 ATTTTTAAATTACTTTTTAAATATTAAATATATTTTTAATAATATAAAACATTTAAATATTTTAA
* *
65775167 AAATATGAACTTTCAAATTTATTATTAGTTTTATAATATTTTAAAT
66 AGATATGACCTTTCAAATTTATTATTAGTTTTATAATATTTTAAAT
65775213 GTCTATTTTA
Statistics
Matches: 259, Mismatches: 4, Indels: 10
0.95 0.01 0.04
Matches are distributed among these distances:
156 16 0.06
157 71 0.27
158 78 0.30
159 43 0.17
160 51 0.20
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.52
Consensus pattern (159 bp):
ATTTTTAAATTACTTTTTAAATATTAAATATATTTTTAATAATATAAAACATTTAAATATTTTAA
AGATATGACCTTTCAAATTTATTATTAGTTTTATAATATTTTAAATATATATTTGAAATGTTTTA
TAATATATATTTTTTAAATTTTAAATATT
Found at i:65775111 original size:13 final size:14
Alignment explanation
Indices: 65775093--65775129 Score: 53
Period size: 12 Copynumber: 2.9 Consensus size: 14
65775083 GTTTTTTAAA
65775093 TTTTAAATATTA-T
1 TTTTAAATATTACT
65775106 TTTT-AA-ATTACT
1 TTTTAAATATTACT
65775118 TTTTAAATATTA
1 TTTTAAATATTA
65775130 AATATATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
11 4 0.19
12 7 0.33
13 6 0.29
14 4 0.19
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (14 bp):
TTTTAAATATTACT
Found at i:65775282 original size:159 final size:157
Alignment explanation
Indices: 65774787--65775267 Score: 708
Period size: 158 Copynumber: 3.1 Consensus size: 157
65774777 ATTTTTTAAA
* *
65774787 ATTTTAAATATTATTTTTTAAATATT-AATATATTTTTAATAATAT-AAACATTTAAATATTTTA
1 ATTTTTAA-ATTACTTTTTAAATATTAAATATATTTTTAATAATATAAAACATTTAAATATTTTA
65774850 AAGATATGACCTTTCAAATTTATTATTAGTTTTATAATATTTTAAATATATATTTGAAATGTTTT
65 AAGATATGACCTTTCAAATTTATTATTAGTTTTATAATATTTTAAATATATATTTGAAA-GTTTT
* *
65774915 ATAATATATATTTTTAAATTTTAAATATT
129 ATAATTTAAATTTTTAAATTTTAAATATT
65774944 ATTTTTAAATTACTTTTTAAATATTAAATATATTTTTAATAATATAAAACATTTAAATATTTTAA
1 ATTTTTAAATTACTTTTTAAATATTAAATATATTTTTAATAATATAAAACATTTAAATATTTTAA
65775009 AGATATGACCTTTCAAATTTATTATTAG-TTTATAATATTTTAAATATATATTTGAAATGTTTTA
66 AGATATGACCTTTCAAATTTATTATTAGTTTTATAATATTTTAAATATATATTTGAAA-GTTTTA
**
65775073 TAATATATATGTTTTTTAAATTTTAAATATT
130 TAAT-T-TA-AATTTTTAAATTTTAAATATT
65775104 ATTTTTAAATTACTTTTTAAATATTAAATATA-TTTTAATAATATAAAACATTTAAATA-TTTAA
1 ATTTTTAAATTACTTTTTAAATATTAAATATATTTTTAATAATATAAAACATTTAAATATTTTAA
* * * * *
65775167 AAATATGAACTTTCAAATTTATTATTAGTTTTATAATATTTTAAATGTCTATTT-TAA-TTTT-T
66 AGATATGACCTTTCAAATTTATTATTAGTTTTATAATATTTTAAATATATATTTGAAAGTTTTAT
**
65775229 AATTTAAATTTTTACTTTTTAATATATAT
131 AATTTAAATTTTTAAATTTTAA-ATAT-T
*
65775258 ATATTTAAAT
1 ATTTTTAAAT
65775268 AAATTCATTT
Statistics
Matches: 301, Mismatches: 15, Indels: 19
0.90 0.04 0.06
Matches are distributed among these distances:
152 12 0.04
153 6 0.02
154 11 0.04
155 4 0.01
156 20 0.07
157 66 0.22
158 80 0.27
159 51 0.17
160 51 0.17
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.53
Consensus pattern (157 bp):
ATTTTTAAATTACTTTTTAAATATTAAATATATTTTTAATAATATAAAACATTTAAATATTTTAA
AGATATGACCTTTCAAATTTATTATTAGTTTTATAATATTTTAAATATATATTTGAAAGTTTTAT
AATTTAAATTTTTAAATTTTAAATATT
Found at i:65775693 original size:23 final size:21
Alignment explanation
Indices: 65775659--65775725 Score: 73
Period size: 21 Copynumber: 3.1 Consensus size: 21
65775649 AAAATATTTA
* *
65775659 AATATTTTATATTATTAAAAAT
1 AATATTTAATATT-TAAAAAAT
65775681 ATATATTTAATATTTAAAAAAT
1 A-ATATTTAATATTTAAAAAAT
* *
65775703 AATATTCAAAATTT-AAAAAT
1 AATATTTAATATTTAAAAAAT
65775723 AAT
1 AAT
65775726 TTCAAATATA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
20 9 0.22
21 11 0.28
22 9 0.22
23 11 0.28
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.43
Consensus pattern (21 bp):
AATATTTAATATTTAAAAAAT
Found at i:65775722 original size:20 final size:20
Alignment explanation
Indices: 65775673--65775731 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 20
65775663 TTTTATATTA
* *
65775673 TTAAAAATATATATTTAATAT
1 TTAAAAATA-ATATTCAAAAT
65775694 TTAAAAAATAATATTCAAAAT
1 TT-AAAAATAATATTCAAAAT
65775715 TTAAAAATAAT-TTCAAA
1 TTAAAAATAATATTCAAA
65775732 TATATATATT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.17
20 9 0.26
21 13 0.37
22 7 0.20
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (20 bp):
TTAAAAATAATATTCAAAAT
Found at i:65775763 original size:23 final size:23
Alignment explanation
Indices: 65775733--65775801 Score: 86
Period size: 23 Copynumber: 3.0 Consensus size: 23
65775723 AATTTCAAAT
65775733 ATATATATTTAAAATTTTTAAAA
1 ATATATATTTAAAATTTTTAAAA
* *
65775756 ATATATATTATAAAATATTT-CAA
1 ATATATATT-TAAAATTTTTAAAA
* *
65775779 ATATACATTCAAAATTTTTAAAA
1 ATATATATTTAAAATTTTTAAAA
65775802 TTAATAATAA
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
22 8 0.21
23 21 0.55
24 9 0.24
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.43
Consensus pattern (23 bp):
ATATATATTTAAAATTTTTAAAA
Found at i:65775826 original size:45 final size:46
Alignment explanation
Indices: 65775733--65775826 Score: 109
Period size: 46 Copynumber: 2.1 Consensus size: 46
65775723 AATTTCAAAT
* * * * ** *
65775733 ATATATATTTAAAATTTTTAAAAATATATATTATAAAATATTTCAA
1 ATATACATTCAAAATTTTTAAAAATATATAATAAAAAATAAGTAAA
*
65775779 ATATACATTCAAAATTTTTAAAATTA-ATAATAAAAAATAAGTAAA
1 ATATACATTCAAAATTTTTAAAAATATATAATAAAAAATAAGTAAA
65775824 ATA
1 ATA
65775827 AATAAAATAA
Statistics
Matches: 40, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
45 17 0.43
46 23 0.57
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.39
Consensus pattern (46 bp):
ATATACATTCAAAATTTTTAAAAATATATAATAAAAAATAAGTAAA
Found at i:65775885 original size:16 final size:16
Alignment explanation
Indices: 65775861--65775894 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
65775851 AAAAGGGACG
65775861 AAAGTAAAAAAGTAAAA
1 AAAGTAAAAAAG-AAAA
65775878 AAAG-AAAAAAGAAAA
1 AAAGTAAAAAAGAAAA
65775893 AA
1 AA
65775895 GAAGCAGATG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.35
16 7 0.41
17 4 0.24
ACGTcount: A:0.82, C:0.00, G:0.12, T:0.06
Consensus pattern (16 bp):
AAAGTAAAAAAGAAAA
Found at i:65779171 original size:24 final size:24
Alignment explanation
Indices: 65779139--65779198 Score: 77
Period size: 24 Copynumber: 2.5 Consensus size: 24
65779129 ATCTTCTTTG
*
65779139 TCTTCACCTCCACC-CTCGTACTCA
1 TCTTCACCTCAACCGC-CGTACTCA
*
65779163 TCTTCACCTCAACCGCCGTATTCA
1 TCTTCACCTCAACCGCCGTACTCA
*
65779187 TATTCACCTCAA
1 TCTTCACCTCAA
65779199 TCGTCATCTT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
24 31 0.97
25 1 0.03
ACGTcount: A:0.22, C:0.43, G:0.05, T:0.30
Consensus pattern (24 bp):
TCTTCACCTCAACCGCCGTACTCA
Found at i:65781757 original size:94 final size:91
Alignment explanation
Indices: 65781600--65781768 Score: 234
Period size: 92 Copynumber: 1.8 Consensus size: 91
65781590 TATCTGTGCT
*
65781600 GATGCCATGTCCCAAACATGGTCTTACATTGACACATCTCATAGTCGATGCATGTCCCAGACATG
1 GATGCCATGTCCCAAACATGGTCTTACACTGA-ACATCTCATAGTCGATGCATGTCCCAGACATG
65781665 TCTTACACTAACAATCGTCTTAATGCC
65 TCTTACACTAACAATCGTCTTAATGCC
* * *
65781692 GATGCCATGTCCTAAACATGGTCTTACACTG-GC-TCTCATAATGTGGCCGATGCATGTCCTAGA
1 GATGCCATGTCCCAAACATGGTCTTACACTGAACATCTCAT-A-GT---CGATGCATGTCCCAGA
65781755 CATGTCTTACACTA
61 CATGTCTTACACTA
65781769 GCTCACAATA
Statistics
Matches: 68, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
89 6 0.09
90 2 0.03
91 2 0.03
92 29 0.43
94 29 0.43
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (91 bp):
GATGCCATGTCCCAAACATGGTCTTACACTGAACATCTCATAGTCGATGCATGTCCCAGACATGT
CTTACACTAACAATCGTCTTAATGCC
Found at i:65790695 original size:46 final size:47
Alignment explanation
Indices: 65790562--65790782 Score: 197
Period size: 46 Copynumber: 4.7 Consensus size: 47
65790552 GTTAGGTACT
* * * **
65790562 GATGCCATGTCCCAGACATGGTCTTACACAAGTTCTGACATATCTGT-GCC
1 GATGCCATGTCCCAGACATGGTCTTACAC-TG-GC--ACATCTCAATAGCC
*
65790612 GATGCCATGTCCCAGACATGGTCTTACACTGACACATCTC-ATAGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCACATCTCAATAGCC
* * *
65790658 GATG-CATGTCCCAGATAT-GTCTTACACTGGCTTACATCTCGA-GGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGC--ACATCTCAATAGCC
* * * *
65790704 AATG-CATATCCCAGACAT-GTCTTACACTAGCAATCGTCTCAATA-CC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGC-A-CATCTCAATAGCC
65790750 GATGCCATGTCCCAGACATGGTCTTACACTGGC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGC
65790783 TCTTATAATG
Statistics
Matches: 145, Mismatches: 18, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
44 12 0.08
45 15 0.10
46 61 0.42
47 14 0.10
48 13 0.09
49 1 0.01
50 29 0.20
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCACATCTCAATAGCC
Found at i:65799793 original size:26 final size:25
Alignment explanation
Indices: 65799743--65799814 Score: 85
Period size: 25 Copynumber: 2.9 Consensus size: 25
65799733 ACAAGCAGAC
*
65799743 TTTTTTTTATATTAAAATATTTTTT
1 TTTTTTTTATAATAAAATATTTTTT
65799768 TGTTTTTTTA-AATAAAATATTATTTT
1 T-TTTTTTTATAATAAAATATT-TTTT
* *
65799794 TTATTTTTATTA-AAAATATTT
1 TTTTTTTTATAATAAAATATTT
65799815 AAATTTATAT
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
24 1 0.02
25 26 0.63
26 14 0.34
ACGTcount: A:0.33, C:0.00, G:0.01, T:0.65
Consensus pattern (25 bp):
TTTTTTTTATAATAAAATATTTTTT
Found at i:65799801 original size:28 final size:25
Alignment explanation
Indices: 65799743--65799807 Score: 76
Period size: 26 Copynumber: 2.4 Consensus size: 25
65799733 ACAAGCAGAC
*
65799743 TTTTTTTTATATTAAAATATTTTTTT
1 TTTTTTTTA-AATAAAATATTTTTTT
*
65799769 GTTTTTTTAAATAAAATATTATTTTT
1 TTTTTTTTAAATAAAATATT-TTTTT
65799795 TATTTTTATTAAA
1 T-TTTTT-TTAAA
65799808 AATATTTAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
25 10 0.30
26 13 0.39
27 5 0.15
28 5 0.15
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (25 bp):
TTTTTTTTAAATAAAATATTTTTTT
Found at i:65800038 original size:17 final size:17
Alignment explanation
Indices: 65800016--65800051 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
65800006 CCCCTACTGA
65800016 CTGCTGCTT-TCAGCTGG
1 CTGCTGCTTGT-AGCTGG
65800033 CTGCTGCTTGTAGCTGG
1 CTGCTGCTTGTAGCTGG
65800050 CT
1 CT
65800052 ACTGTATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.94
18 1 0.06
ACGTcount: A:0.06, C:0.28, G:0.31, T:0.36
Consensus pattern (17 bp):
CTGCTGCTTGTAGCTGG
Found at i:65800172 original size:9 final size:10
Alignment explanation
Indices: 65800143--65800209 Score: 50
Period size: 11 Copynumber: 6.6 Consensus size: 10
65800133 ACCACCCACT
*
65800143 AGAAGAGAGAA
1 AGAAAAGAG-A
65800154 AGAAAAGAG-
1 AGAAAAGAGA
*
65800163 AGAAAGGAGA
1 AGAAAAGAGA
*
65800173 AGAAAAAAAGA
1 AG-AAAAGAGA
65800184 AGAAGAAGAAGA
1 AGAA-AAG-AGA
65800196 AG-AAAGA-A
1 AGAAAAGAGA
65800204 AGAAAA
1 AGAAAA
65800210 AATAAAAGAA
Statistics
Matches: 46, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
8 3 0.07
9 12 0.26
10 7 0.15
11 19 0.41
12 5 0.11
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (10 bp):
AGAAAAGAGA
Found at i:65800179 original size:20 final size:20
Alignment explanation
Indices: 65800156--65800207 Score: 56
Period size: 17 Copynumber: 2.8 Consensus size: 20
65800146 AGAGAGAAAG
*
65800156 AAAAGAGAGAAAGGAGAAGA
1 AAAAGAGAGAAAGAAGAAGA
65800176 AAAA-A-AG-AAGAAGAAGA
1 AAAAGAGAGAAAGAAGAAGA
* *
65800193 AGAAGAAAGAAAGAA
1 AAAAGAGAGAAAGAA
65800208 AAAATAAAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
17 12 0.44
18 3 0.11
19 3 0.11
20 9 0.33
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (20 bp):
AAAAGAGAGAAAGAAGAAGA
Found at i:65800196 original size:23 final size:23
Alignment explanation
Indices: 65800143--65800207 Score: 71
Period size: 23 Copynumber: 2.8 Consensus size: 23
65800133 ACCACCCACT
65800143 AGAAGAGAGAAAGAAAAG-AGAGAA
1 AGAAGA-AGAAA-AAAAGAAGAGAA
*
65800167 AGGAGAAGAAAAAAAGAAGA-AGA
1 AGAAGAAGAAAAAAAGAAGAGA-A
*
65800190 AGAAGAAGAAAGAAAGAA
1 AGAAGAAGAAAAAAAGAA
65800208 AAAATAAAAG
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
22 6 0.17
23 25 0.69
24 5 0.14
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (23 bp):
AGAAGAAGAAAAAAAGAAGAGAA
Found at i:65806721 original size:24 final size:23
Alignment explanation
Indices: 65806694--65806738 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
65806684 TTCCGTTCAA
*
65806694 CTAAAATTTGTTTCTGTTGCTCTG
1 CTAAAATTTGTGTCTG-TGCTCTG
*
65806718 CTAAATTTTGTGTCTGTGCTC
1 CTAAAATTTGTGTCTGTGCTC
65806739 ATTTGATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.16, C:0.18, G:0.18, T:0.49
Consensus pattern (23 bp):
CTAAAATTTGTGTCTGTGCTCTG
Found at i:65806934 original size:27 final size:27
Alignment explanation
Indices: 65806805--65806934 Score: 143
Period size: 27 Copynumber: 4.8 Consensus size: 27
65806795 CCCGCCATTT
*
65806805 GCGCCTCTGAGATAGGCACAATTAGTC
1 GCGCCTCTGAGATAGGCACAACTAGTC
* * *
65806832 GTGCCTTTGAGATAGGCACAATTAGTC
1 GCGCCTCTGAGATAGGCACAACTAGTC
* * * *
65806859 GCGCCTCTGAAAAAGACTCAACTAGTC
1 GCGCCTCTGAGATAGGCACAACTAGTC
* * *
65806886 GCGCCTCTGAGAAAGACTCAACTAGTC
1 GCGCCTCTGAGATAGGCACAACTAGTC
* *
65806913 GCGCCTCAGAGATAGGCGCAAC
1 GCGCCTCTGAGATAGGCACAAC
65806935 CTGTATTCGT
Statistics
Matches: 89, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 89 1.00
ACGTcount: A:0.28, C:0.27, G:0.25, T:0.20
Consensus pattern (27 bp):
GCGCCTCTGAGATAGGCACAACTAGTC
Found at i:65807010 original size:28 final size:27
Alignment explanation
Indices: 65806970--65807029 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 27
65806960 ATACTGATCC
*
65806970 AAAAATAAAAAATAATATCTT-ATTTAA
1 AAAAATAAAAAAT-ATATCTTAATATAA
*
65806997 AAAAATAAAAAAATATATTTTAATATAA
1 AAAAAT-AAAAAATATATCTTAATATAA
65807025 AAAAA
1 AAAAA
65807030 AGTCGCGCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 12 0.41
28 17 0.59
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (27 bp):
AAAAATAAAAAATATATCTTAATATAA
Found at i:65807014 original size:27 final size:28
Alignment explanation
Indices: 65806970--65807029 Score: 79
Period size: 27 Copynumber: 2.2 Consensus size: 28
65806960 ATACTGATCC
*
65806970 AAAAATAAAAAATAATATCTT-ATTTAA
1 AAAAATAAAAAATAATATCTTAATATAA
*
65806997 AAAAATAAAAAA-ATATATTTTAATATAA
1 AAAAATAAAAAATA-ATATCTTAATATAA
65807025 AAAAA
1 AAAAA
65807030 AGTCGCGCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 1 0.03
27 18 0.62
28 10 0.34
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (28 bp):
AAAAATAAAAAATAATATCTTAATATAA
Found at i:65808555 original size:15 final size:15
Alignment explanation
Indices: 65808520--65808549 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
65808510 TTTAATCATT
*
65808520 TATAAATTATAAATA
1 TATAAATTATAAAAA
65808535 TATAAATTATAAAAA
1 TATAAATTATAAAAA
65808550 ATTAAAATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
TATAAATTATAAAAA
Found at i:65811608 original size:10 final size:10
Alignment explanation
Indices: 65811558--65811599 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
65811548 TATAATCTTT
65811558 AAAAATA-AA
1 AAAAATATAA
*
65811567 AAAACTATAA
1 AAAAATATAA
* *
65811577 ATAATTATAA
1 AAAAATATAA
65811587 AAAAATATAA
1 AAAAATATAA
65811597 AAA
1 AAA
65811600 TATTTAAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
9 6 0.22
10 21 0.78
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.21
Consensus pattern (10 bp):
AAAAATATAA
Found at i:65812094 original size:19 final size:19
Alignment explanation
Indices: 65812054--65812096 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
65812044 AATTAGTAAC
** *
65812054 TTTTTTATATTTTTGTATT
1 TTTTTTATATTTTTCCAAT
65812073 TTTTTTATATTTTTCCAAT
1 TTTTTTATATTTTTCCAAT
65812092 TTTTT
1 TTTTT
65812097 AAAATATTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.16, C:0.05, G:0.02, T:0.77
Consensus pattern (19 bp):
TTTTTTATATTTTTCCAAT
Found at i:65815651 original size:29 final size:28
Alignment explanation
Indices: 65815562--65815707 Score: 109
Period size: 29 Copynumber: 5.2 Consensus size: 28
65815552 GACATGTTGC
* *
65815562 AAAAAAATGATAAAAA-A-TAAAAATCA
1 AAAAAAATTATAAAAATATTAAAAATTA
* * * **
65815588 ATAAAATTTATAAAATTATTAAATTTCTA
1 AAAAAAATTATAAAAATATTAAAAAT-TA
*
65815617 ATAAAAA-TATAAAAATATTAAAAATTA
1 AAAAAAATTATAAAAATATTAAAAATTA
** *
65815644 GAAAAAAATTATAAAAATCGTAAAAAGCTA
1 -AAAAAAATTATAAAAATATTAAAAA-TTA
* *
65815674 TAAAAAATTATAAAAATCATAAAAAATTA
1 AAAAAAATTATAAAAAT-ATTAAAAATTA
*
65815703 TAAAA
1 AAAAA
65815708 TGCATCAAAA
Statistics
Matches: 93, Mismatches: 20, Indels: 11
0.75 0.16 0.09
Matches are distributed among these distances:
26 12 0.13
27 3 0.03
28 26 0.28
29 45 0.48
30 7 0.08
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.27
Consensus pattern (28 bp):
AAAAAAATTATAAAAATATTAAAAATTA
Found at i:65815707 original size:9 final size:9
Alignment explanation
Indices: 65815564--65815707 Score: 73
Period size: 9 Copynumber: 15.4 Consensus size: 9
65815554 CATGTTGCAA
*
65815564 AAAAATGAT
1 AAAAATTAT
65815573 AAAAA--AT
1 AAAAATTAT
*
65815580 AAAAATCAAT
1 AAAAAT-TAT
*
65815590 AAAATTTAT
1 AAAAATTAT
65815599 -AAAATTATT
1 AAAAATTA-T
**
65815608 AAATTTCTAAT
1 AAAAAT-T-AT
65815619 AAAAA-TAT
1 AAAAATTAT
65815627 AAAAA-TATT
1 AAAAATTA-T
*
65815636 AAAAATTAGAA
1 AAAAATT--AT
65815647 AAAAATTAT
1 AAAAATTAT
**
65815656 AAAAATCGT
1 AAAAATTAT
*
65815665 AAAAAGCTAT
1 AAAAA-TTAT
65815675 AAAAAATTAT
1 -AAAAATTAT
*
65815685 AAAAATCAT
1 AAAAATTAT
65815694 AAAAAATTAT
1 -AAAAATTAT
65815704 AAAA
1 AAAA
65815708 TGCATCAAAA
Statistics
Matches: 104, Mismatches: 17, Indels: 28
0.70 0.11 0.19
Matches are distributed among these distances:
7 7 0.07
8 15 0.14
9 40 0.38
10 23 0.22
11 17 0.16
12 2 0.02
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.28
Consensus pattern (9 bp):
AAAAATTAT
Found at i:65815719 original size:19 final size:19
Alignment explanation
Indices: 65815619--65815707 Score: 76
Period size: 20 Copynumber: 4.7 Consensus size: 19
65815609 AATTTCTAAT
*
65815619 AAAAA-TATAAAAAT-ATT
1 AAAAATTATAAAAATCATA
* *
65815636 AAAAATTAGAAAAA-AATTA
1 AAAAATTATAAAAATCA-TA
** *
65815655 TAAAAATCGTAAAAAGCTATA
1 -AAAAATTATAAAAATC-ATA
65815676 AAAAATTATAAAAATCATA
1 AAAAATTATAAAAATCATA
65815695 AAAAATTATAAAA
1 AAAAATTATAAAA
65815708 TGCATCAAAA
Statistics
Matches: 57, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
17 5 0.09
18 8 0.14
19 17 0.30
20 24 0.42
21 2 0.04
22 1 0.02
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.25
Consensus pattern (19 bp):
AAAAATTATAAAAATCATA
Found at i:65818763 original size:40 final size:40
Alignment explanation
Indices: 65818706--65818923 Score: 309
Period size: 40 Copynumber: 5.5 Consensus size: 40
65818696 CGGATGATAA
* *
65818706 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
65818746 CCGGGCTAAG-CCTCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCC-CGAAGGCATTTGTGCGAGTTACTATAT
* *
65818786 CCGGGCTAAGTCCCGAAGGCATTTGTGCCAGTTACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
65818826 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
65818866 CCGGGCTAAGTCCCGAAGGCATTTGAGTGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
65818906 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
65818924 TACTTGGTTT
Statistics
Matches: 163, Mismatches: 11, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
39 19 0.12
40 141 0.87
41 3 0.02
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:65834506 original size:26 final size:26
Alignment explanation
Indices: 65834477--65834531 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
65834467 TGATACAAAT
65834477 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
65834503 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
65834529 TGA
1 TGA
65834532 ATGTTCCATG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.31, C:0.05, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:65834535 original size:37 final size:37
Alignment explanation
Indices: 65834494--65834568 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
65834484 GGGTTAGGTA
*
65834494 AATGTTCCATGATAATGGGTTAGGTAAATGTTTCATG
1 AATGTTCCATGATAATGGGTTAGGTAAATGTTCCATG
65834531 AATGTTCCATGATAATGGGTTAGGTAAATGTTCCATG
1 AATGTTCCATGATAATGGGTTAGGTAAATGTTCCATG
65834568 A
1 A
65834569 TAGGAATTTC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.31, C:0.09, G:0.24, T:0.36
Consensus pattern (37 bp):
AATGTTCCATGATAATGGGTTAGGTAAATGTTCCATG
Found at i:65837305 original size:15 final size:15
Alignment explanation
Indices: 65837268--65837302 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 15
65837258 TGGGTTTACA
65837268 AAAACAAAAATTTTT
1 AAAACAAAAATTTTT
65837283 GAAAACAAAAATTTTAT
1 -AAAACAAAAATTTT-T
65837300 AAA
1 AAA
65837303 CAATGCGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 17 0.94
17 1 0.06
ACGTcount: A:0.63, C:0.06, G:0.03, T:0.29
Consensus pattern (15 bp):
AAAACAAAAATTTTT
Found at i:65841590 original size:26 final size:26
Alignment explanation
Indices: 65841561--65841616 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
65841551 TGATACAAAT
65841561 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
65841587 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
65841613 TGAT
1 TGAT
65841617 GGGAATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:65850844 original size:44 final size:44
Alignment explanation
Indices: 65850769--65851215 Score: 646
Period size: 44 Copynumber: 10.2 Consensus size: 44
65850759 TGGCGAATCC
*
65850769 AGCAAATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGAT
1 AGCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGAT
* * *
65850813 AGCAGATTTGGCATCTCTGTATTGACAGAGAGCAGATCGAAGAT
1 AGCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGAT
65850857 AGCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGAT
1 AGCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGAT
65850901 AGCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGAT
1 AGCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGAT
* * * * * *
65850945 AACAGATTTGGCATCTCTATGTTGACAGAGAGCAGATCGAAGAT
1 AGCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGAT
**
65850989 AGCAGATTTGGTGTCTCTGTATTGGCGGAGAGCAGATCAAAGAT
1 AGCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGAT
* * *
65851033 AGCAGATTTGGCACCTCTGTAATGGCGGAGAGCAGATCAAAGGT
1 AGCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGAT
* * * * * *
65851077 AGCAGATTTGGCATATCTATGTTGACAGAGAGTAGATCAAAGAT
1 AGCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGAT
*
65851121 AGCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGAT
1 AGCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGAT
* *
65851165 AGCAGATTTGACATCTCTG-A-TGGACGGAGAGCAGATCGAAGAT
1 AGCAGATTTGGCATCTCTGTATTGG-CGGAGAGCAGATCAAAGAT
*
65851208 AACAGATT
1 AGCAGATT
65851216 GGTGTTCCCG
Statistics
Matches: 358, Mismatches: 44, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
42 3 0.01
43 25 0.07
44 330 0.92
ACGTcount: A:0.32, C:0.15, G:0.28, T:0.25
Consensus pattern (44 bp):
AGCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGAT
Found at i:65851011 original size:132 final size:132
Alignment explanation
Indices: 65850769--65851215 Score: 727
Period size: 132 Copynumber: 3.4 Consensus size: 132
65850759 TGGCGAATCC
* * * *
65850769 AGCAAATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGATAGCAGATTTGGCATCTCTGTA
1 AGCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGATAACAGATTTGGCATCTCTATG
65850834 TTGACAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAG
66 TTGACAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAG
65850899 AT
131 AT
65850901 AGCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGATAACAGATTTGGCATCTCTATG
1 AGCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGATAACAGATTTGGCATCTCTATG
**
65850966 TTGACAGAGAGCAGATCGAAGATAGCAGATTTGGTGTCTCTGTATTGGCGGAGAGCAGATCAAAG
66 TTGACAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAG
65851031 AT
131 AT
* * * * *
65851033 AGCAGATTTGGCACCTCTGTAATGGCGGAGAGCAGATCAAAGGTAGCAGATTTGGCATATCTATG
1 AGCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGATAACAGATTTGGCATCTCTATG
* * *
65851098 TTGACAGAGAGTAGATCAAAGATAGCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAG
66 TTGACAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAG
65851163 AT
131 AT
* *
65851165 AGCAGATTTGACATCTCTG-A-TGGACGGAGAGCAGATCGAAGATAACAGATT
1 AGCAGATTTGGCATCTCTGTATTGG-CGGAGAGCAGATCAAAGATAACAGATT
65851216 GGTGTTCCCG
Statistics
Matches: 293, Mismatches: 21, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
130 3 0.01
131 25 0.09
132 265 0.90
ACGTcount: A:0.32, C:0.15, G:0.28, T:0.25
Consensus pattern (132 bp):
AGCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGATAACAGATTTGGCATCTCTATG
TTGACAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAG
AT
Found at i:65859676 original size:22 final size:22
Alignment explanation
Indices: 65859651--65859695 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
65859641 AAGGCAAGTA
*
65859651 GGAGAAATATTTGCTGCTGGTT
1 GGAGAAATATTTGCCGCTGGTT
65859673 GGAGAAATATTTGCCGCTGGTT
1 GGAGAAATATTTGCCGCTGGTT
65859695 G
1 G
65859696 AATCCGCATA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.22, C:0.11, G:0.33, T:0.33
Consensus pattern (22 bp):
GGAGAAATATTTGCCGCTGGTT
Found at i:65864838 original size:30 final size:30
Alignment explanation
Indices: 65864802--65864861 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
65864792 GGCAGTGGAG
65864802 TCTCTCGGTGACCACTAGACTATGAACTGA
1 TCTCTCGGTGACCACTAGACTATGAACTGA
65864832 TCTCTCGGTGACCACTAGACTATGAACTGA
1 TCTCTCGGTGACCACTAGACTATGAACTGA
65864862 CTTTAAATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (30 bp):
TCTCTCGGTGACCACTAGACTATGAACTGA
Found at i:65865287 original size:10 final size:10
Alignment explanation
Indices: 65865274--65865303 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
65865264 AATTTCAATC
65865274 AATTTACCTT
1 AATTTACCTT
*
65865284 AATTTACCTC
1 AATTTACCTT
65865294 AATTTACCTT
1 AATTTACCTT
65865304 TTCTTCTCCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.30, C:0.23, G:0.00, T:0.47
Consensus pattern (10 bp):
AATTTACCTT
Found at i:65866910 original size:22 final size:21
Alignment explanation
Indices: 65866880--65866945 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
65866870 TACAAATTAA
65866880 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
65866902 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
65866923 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
65866942 ATCT
1 ATCT
65866946 AAGATTGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:65866932 original size:19 final size:19
Alignment explanation
Indices: 65866897--65866994 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
65866887 AGATTACAAG
65866897 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
65866918 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
65866937 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
*
65866954 ATCATATCTAATATTGCAT
1 ATCATATCTAAGATTGCAT
65866973 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
65866992 ATC
1 ATC
65866995 CTTAAAGATT
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
17 16 0.22
19 48 0.66
20 1 0.01
21 8 0.11
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.39
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:65866961 original size:36 final size:37
Alignment explanation
Indices: 65866897--65866994 Score: 144
Period size: 36 Copynumber: 2.6 Consensus size: 37
65866887 AGATTACAAG
65866897 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATC-T-AAGATTG-ATATCATATCTAAGATTGCAT
*
65866937 ATCATATCTAAGATTG-TATCATATCTAATATTGCAT
1 ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
65866973 ATCATATCTAAGATTGCATATC
1 ATCATATCTAAGATTG-ATATC
65866995 CTTAAAGATT
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
36 35 0.64
38 11 0.20
39 1 0.02
40 8 0.15
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.39
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
Found at i:65867381 original size:45 final size:44
Alignment explanation
Indices: 65867326--65867417 Score: 114
Period size: 44 Copynumber: 2.1 Consensus size: 44
65867316 GGAAGGCGAT
* *
65867326 ATCTGCTATCTTTGATCTGCTCTTC-GTCTAATACAGAGACGCCAA
1 ATCTGCTATCTTCGATCTG-TCTTCTGAC-AATACAGAGACGCCAA
* * *
65867371 ATCTGTTATCTTCGATCTGTTTTCTGACAATACAGAGATGCCAA
1 ATCTGCTATCTTCGATCTGTCTTCTGACAATACAGAGACGCCAA
65867415 ATC
1 ATC
65867418 ATCTTAGATC
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
44 22 0.54
45 19 0.46
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.35
Consensus pattern (44 bp):
ATCTGCTATCTTCGATCTGTCTTCTGACAATACAGAGACGCCAA
Found at i:65867852 original size:84 final size:84
Alignment explanation
Indices: 65867687--65868299 Score: 801
Period size: 84 Copynumber: 7.3 Consensus size: 84
65867677 ATCATCTTGG
* * * * *
65867687 ACCCTACTGCTTAAGGGG-TTAAGGTGCATTGTCTTTGATCTGTTCCGCTACTGGTTA-GG-GAT
1 ACCCTACTGCTT-AGGGGATTAAGGCG-A--GTCTTCGATCTGCTCCACTACTGCTTAGGGAGAT
*
65867749 AAGATCTGTAAATTTAACCTGTT
62 AAGATCTGCAAATTTAACCTGTT
* * *
65867772 ACCCTACTGCTTAGGGGATTAAGGTGGGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
*
65867837 TCTACAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
* * * * **
65867856 ACCCTACTACTTAGGGGATTAAGGTGAGTCGTCGTTGATCTGCTTCGTTACTGCTTAGGGAGATA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTC-T--TCGATCTGCTCCACTACTGCTTAGGGAGATA
*
65867921 AGATCTGC-----GAACCTGTT
63 AGATCTGCAAATTTAACCTGTT
* *
65867938 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGAAGATAAGG
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
65868003 TCTGCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
** * *
65868022 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTATTCCACTACTGTTTAGAGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
* *
65868087 TTTGCAAATTTAACCTATT
66 TCTGCAAATTTAACCTGTT
*
65868106 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
** *
65868171 AATGCAAATTTAACCTATT
66 TCTGCAAATTTAACCTGTT
* * *
65868190 ACCCTAGTGCTTAGGGGATTGAGGCGAGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
*
65868255 TCTGCAAATTTAACCAGTT
66 TCTGCAAATTTAACCTGTT
*
65868274 ACCCTACTGCTGAGGGGATTAAGGCG
1 ACCCTACTGCTTAGGGGATTAAGGCG
65868300 CTGAATTTTG
Statistics
Matches: 467, Mismatches: 50, Indels: 23
0.86 0.09 0.04
Matches are distributed among these distances:
79 33 0.07
81 1 0.00
82 58 0.12
83 2 0.00
84 319 0.68
85 21 0.04
87 33 0.07
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.31
Consensus pattern (84 bp):
ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
TCTGCAAATTTAACCTGTT
Found at i:65868002 original size:41 final size:41
Alignment explanation
Indices: 65867941--65868166 Score: 144
Period size: 41 Copynumber: 5.4 Consensus size: 41
65867931 ACCTGTTACC
* **
65867941 CTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCA
1 CTACTGCTTAGGAGATTAAGGCGAGTCTTCGATCTATTCCA
* * * *
65867982 CTACTGCTTAGGAAGA-TAAGGTCTGCAAAT-TT-AACCTGTTACC-
1 CTACTGCTTAGG-AGATTAAGG-C-G--AGTCTTCGATCTATT-CCA
*
65868025 CTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTATTCCA
1 CTACTGCTTAGGAGATTAAGGCGAGTCTTCGATCTATTCCA
* * * * *
65868066 CTACTGTTTAGAGAGA-TAAGATTTGCAAAT-TT-AACCTATTACC-
1 CTACTGCTTAG-GAGATTAAG----GCGAGTCTTCGATCTATT-CCA
* *
65868109 CTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTACTCCA
1 CTACTGCTTAGGAGATTAAGGCGAGTCTTCGATCTATTCCA
65868150 CTACTGCTTAGGGAGAT
1 CTACTGCTTA-GGAGAT
65868167 AAGAAATGCA
Statistics
Matches: 140, Mismatches: 24, Indels: 41
0.68 0.12 0.20
Matches are distributed among these distances:
39 6 0.04
40 8 0.06
41 52 0.37
42 17 0.12
43 43 0.31
44 8 0.06
45 6 0.04
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (41 bp):
CTACTGCTTAGGAGATTAAGGCGAGTCTTCGATCTATTCCA
Found at i:65868246 original size:41 final size:41
Alignment explanation
Indices: 65868109--65868246 Score: 111
Period size: 41 Copynumber: 3.3 Consensus size: 41
65868099 ACCTATTACC
* *
65868109 CTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTACTCCA
1 CTACTGCTTAGGGGATTGAGGCGAGTCTTTGATCTACTCCA
* * ** * * *
65868150 CTACTGCTTAGGGAGATAAGAAATGC-A-AATTTAACCTATTACC-
1 CTACTGCTTAGGG-GAT-TG--AGGCGAGTCTTTGATCTACT-CCA
* *
65868193 CTAGTGCTTAGGGGATTGAGGCGAGTCTTTGATCTGCTCCA
1 CTACTGCTTAGGGGATTGAGGCGAGTCTTTGATCTACTCCA
65868234 CTACTGCTTAGGG
1 CTACTGCTTAGGG
65868247 AGATAAGATC
Statistics
Matches: 70, Mismatches: 19, Indels: 16
0.67 0.18 0.15
Matches are distributed among these distances:
39 3 0.04
40 3 0.04
41 33 0.47
42 6 0.09
43 19 0.27
44 3 0.04
45 3 0.04
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (41 bp):
CTACTGCTTAGGGGATTGAGGCGAGTCTTTGATCTACTCCA
Found at i:65869260 original size:7 final size:7
Alignment explanation
Indices: 65869248--65869318 Score: 58
Period size: 7 Copynumber: 9.9 Consensus size: 7
65869238 TCTCTCCATT
65869248 TTTTTTC
1 TTTTTTC
65869255 TTTTTTC
1 TTTTTTC
65869262 TTTTTTC
1 TTTTTTC
65869269 TCTTTTT-
1 T-TTTTTC
*
65869276 TATTTTTAT
1 T-TTTTT-C
65869285 TTTTTTCC
1 TTTTTT-C
*
65869293 CTTTTTC
1 TTTTTTC
65869300 --TTTTC
1 TTTTTTC
65869305 TTTTTTCC
1 TTTTTT-C
65869313 TTTTTT
1 TTTTTT
65869319 TTGAAATAGA
Statistics
Matches: 54, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
5 5 0.09
7 26 0.48
8 22 0.41
9 1 0.02
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (7 bp):
TTTTTTC
Found at i:65869260 original size:8 final size:8
Alignment explanation
Indices: 65869247--65869319 Score: 50
Period size: 8 Copynumber: 9.9 Consensus size: 8
65869237 GTCTCTCCAT
65869247 TTTTTTTC
1 TTTTTTTC
65869255 -TTTTTTC
1 TTTTTTTC
65869262 -TTTTTTC
1 TTTTTTTC
*
65869269 TCTTTTT-
1 TTTTTTTC
* *
65869276 TATTTTTA
1 TTTTTTTC
65869284 TTTTTTTC
1 TTTTTTTC
**
65869292 CCTTTTTC
1 TTTTTTTC
65869300 ---TTTTC
1 TTTTTTTC
*
65869305 TTTTTTCC
1 TTTTTTTC
65869313 TTTTTTT
1 TTTTTTT
65869320 TGAAATAGAA
Statistics
Matches: 52, Mismatches: 8, Indels: 10
0.74 0.11 0.14
Matches are distributed among these distances:
5 5 0.10
7 20 0.38
8 27 0.52
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (8 bp):
TTTTTTTC
Found at i:65873290 original size:14 final size:14
Alignment explanation
Indices: 65873271--65873297 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
65873261 CGATTCAATC
65873271 TTATTTAGAAAAAT
1 TTATTTAGAAAAAT
65873285 TTATTTAGAAAAA
1 TTATTTAGAAAAA
65873298 GAATATCTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (14 bp):
TTATTTAGAAAAAT
Found at i:65875488 original size:40 final size:40
Alignment explanation
Indices: 65875404--65875588 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
65875394 TCGAATGATG
* *
65875404 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
65875443 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
65875484 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
65875523 TCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
65875562 AACCGGGCTATGTCCCGAAGGCCTTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
65875589 AATGAGTAGC
Statistics
Matches: 125, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
39 36 0.29
40 79 0.63
41 10 0.08
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:65875540 original size:79 final size:80
Alignment explanation
Indices: 65875404--65875583 Score: 224
Period size: 79 Copynumber: 2.3 Consensus size: 80
65875394 TCGAATGATG
* *
65875404 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
65875469 GTGCGAGTTACTA-A
66 GTGCGAGTTACTATA
* * **
65875483 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGC-TTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
*
65875545 TTTGTGTGAGTTACTATA
63 TTTGTGCGAGTTACTATA
* *
65875563 ACCGGGCTATGTCCCGAAGGC
1 TCCGGGCTAAGTCCCGAAGGC
65875584 CTTTGAATGA
Statistics
Matches: 87, Mismatches: 9, Indels: 8
0.84 0.09 0.08
Matches are distributed among these distances:
78 1 0.01
79 59 0.68
80 27 0.31
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTATA
Found at i:65875610 original size:79 final size:78
Alignment explanation
Indices: 65875405--65875621 Score: 192
Period size: 79 Copynumber: 2.7 Consensus size: 78
65875395 CGAATGATGT
** * *
65875405 CCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCCTTTG-AATGAGTAG-CTATATCCGG-TTAAG-TCCGAAGGCATT
*
65875468 TGTGCGAGTTACTAATT
62 TGTGCGAGTTACTAATA
* * *** *
65875485 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCCTTTGAATGAG-TAGCTATATCC-GGTTAAGT-CCGAAGGCATTT
*
65875548 GTGTGAGTTACT-ATAA
63 GTGCGAGTTACTAAT-A
* *
65875564 CCGGGCTATGTCCCGAAGGCCTTTGAATGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCCTTTGAATGAGTAGCTATATCCGGTT-AAGTCCGAAGG
65875622 TACGTGATTC
Statistics
Matches: 110, Mismatches: 18, Indels: 19
0.75 0.12 0.13
Matches are distributed among these distances:
78 3 0.03
79 66 0.60
80 41 0.37
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCCTTTGAATGAGTAGCTATATCCGGTTAAGTCCGAAGGCATTTGTG
CGAGTTACTAATA
Found at i:65883454 original size:30 final size:30
Alignment explanation
Indices: 65883420--65883480 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
65883410 TCCTTAACTC
65883420 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
65883450 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
65883480 A
1 A
65883481 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:65887117 original size:80 final size:80
Alignment explanation
Indices: 65886965--65887157 Score: 221
Period size: 80 Copynumber: 2.4 Consensus size: 80
65886955 CGGTTTTAGT
* * * *
65886965 AACTCACACAATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTT
1 AACTCGCACAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGACTT
*
65887030 AACCCGGATTTA-AC
66 AACCCGGATATATAC
* *
65887044 AACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATATCTCGCACAAAGGCCTTC-GGATC
1 AACTCGCAC-AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGA-C
** *
65887108 TTAGTCCGGATATATTC
64 TTAACCCGGATATATAC
* * *
65887125 -ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AAC-TCGCACAATGCCTTCGGGACTTAACCCGGA
65887158 CAGCATTCAA
Statistics
Matches: 97, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
79 11 0.11
80 80 0.82
81 6 0.06
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (80 bp):
AACTCGCACAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGACTT
AACCCGGATATATAC
Found at i:65887118 original size:40 final size:40
Alignment explanation
Indices: 65886935--65887104 Score: 234
Period size: 40 Copynumber: 4.3 Consensus size: 40
65886925 TCCTCGTTCA
* * * ** *
65886935 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
65886974 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
65887014 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * *
65887054 AATGCCTTCGGGACTTAACCCGGATTTAATATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
65887094 AAGGCCTTCGG
1 AATGCCTTCGG
65887105 ATCTTAGTCC
Statistics
Matches: 120, Mismatches: 10, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
39 34 0.28
40 86 0.72
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:65887166 original size:41 final size:41
Alignment explanation
Indices: 65887089--65887166 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
65887079 TTAATATCTC
* * *
65887089 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
65887130 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
65887167 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:65895023 original size:80 final size:80
Alignment explanation
Indices: 65894871--65895063 Score: 221
Period size: 80 Copynumber: 2.4 Consensus size: 80
65894861 CGGTTTTAGT
* * * *
65894871 AACTCACACAATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTT
1 AACTCGCACAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGACTT
*
65894936 AACCCGGATTTA-AC
66 AACCCGGATATATAC
* *
65894950 AACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATATCTCGCACAAAGGCCTTC-GGATC
1 AACTCGCAC-AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGA-C
** *
65895014 TTAGTCCGGATATATTC
64 TTAACCCGGATATATAC
* * *
65895031 -ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AAC-TCGCACAATGCCTTCGGGACTTAACCCGGA
65895064 CAGCATTCAA
Statistics
Matches: 97, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
79 11 0.11
80 80 0.82
81 6 0.06
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (80 bp):
AACTCGCACAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGACTT
AACCCGGATATATAC
Found at i:65895024 original size:40 final size:40
Alignment explanation
Indices: 65894841--65895010 Score: 234
Period size: 40 Copynumber: 4.3 Consensus size: 40
65894831 TCCTCGTTCA
* * * ** *
65894841 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
65894880 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
65894920 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * *
65894960 AATGCCTTCGGGACTTAACCCGGATTTAATATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
65895000 AAGGCCTTCGG
1 AATGCCTTCGG
65895011 ATCTTAGTCC
Statistics
Matches: 120, Mismatches: 10, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
39 34 0.28
40 86 0.72
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:65895072 original size:41 final size:41
Alignment explanation
Indices: 65894995--65895072 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
65894985 TTAATATCTC
* * *
65894995 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
65895036 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
65895073 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:65900761 original size:208 final size:207
Alignment explanation
Indices: 65900392--65900783 Score: 631
Period size: 208 Copynumber: 1.9 Consensus size: 207
65900382 GCAACAGGCT
* **
65900392 AAAGCATAGCAGATTTGACCTTCAGGTGTTTACGCTGAAGTGGATCCAAGATGATTTAACATCTC
1 AAAGCATAGCAGATTTGACCTTCACGTGTTTACGCTGAAGCAGATCCAAGATGATTTAACATCTC
* * *
65900457 TGTATTGTCAGAGAACAAATCGAAGAAATAGATTTGGCATCTCCATATTCGACGGAGAGGAGATC
66 TGTACTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATC
65900522 GAAGACACAACAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCCTTGCGTTGAC
131 GAAGACACAACAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCCTTGCGTTGAC
65900587 AAGGAGCAGATC
196 AAGGAGCAGATC
* * * *
65900599 AAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTAGCATCT
1 AAAG-CATAGCAGATTTGACCTTCACGTGTTTACGCTGAAGCAGATCCAAGATGATTTAACATCT
*
65900664 CTGTACTGTCTGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGAT
65 CTGTACTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGAT
* * * * *
65900729 CGAAGACATAGCAGGTCTGACCTTCTTTGAAGCAGATCCAAGGTGATTTGGCATC
130 CGAAGACACAACAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATC
65900784 TCTGTATTAG
Statistics
Matches: 168, Mismatches: 16, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
207 4 0.02
208 164 0.98
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (207 bp):
AAAGCATAGCAGATTTGACCTTCACGTGTTTACGCTGAAGCAGATCCAAGATGATTTAACATCTC
TGTACTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATC
GAAGACACAACAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCCTTGCGTTGAC
AAGGAGCAGATC
Found at i:65900989 original size:78 final size:78
Alignment explanation
Indices: 65900695--65900989 Score: 405
Period size: 78 Copynumber: 3.8 Consensus size: 78
65900685 CGAAGAAACA
** * * * * *
65900695 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGGTCTGACCTTCTTTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAACAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
*
65900760 GCAGATCCAAGGT
66 GCAGATCCAAGAT
* * *
65900773 GATTTGGCATCTCTGTATTAGAC-GGGAAGCAGATTGAAGACACAGCAGATCTGACCTTTATTGA
1 GATTTGGCATCTCTGTATTAGACGGGGAA-CAGATCGAAGACATAGCAGATCTGACCTTCATTGA
65900837 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
* * * *
65900851 GATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGACATAACAGAT-TGGACTTTCATTGA
1 GATTTGGCATCTCTGTATTAGACGGGGAACAGATCGAAGACATAGCAGATCT-GACCTTCATTGA
*
65900915 AGTAGATCCAAGAT
65 AGCAGATCCAAGAT
*
65900929 GATTTGGCATCTCTGTATTAGACGGGGAACAGATCAAAGACATAGCAGATCTGACCTTCAT
1 GATTTGGCATCTCTGTATTAGACGGGGAACAGATCGAAGACATAGCAGATCTGACCTTCAT
65900990 GTGTTTACAT
Statistics
Matches: 190, Mismatches: 23, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
77 4 0.02
78 181 0.95
79 5 0.03
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAACAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:65901067 original size:45 final size:45
Alignment explanation
Indices: 65901003--65901202 Score: 267
Period size: 45 Copynumber: 4.5 Consensus size: 45
65900993 TTTACATCGA
** *
65901003 AGCAGATCCAAGATGACAGATTTGGCATCTCTGTATTAGACGGGG
1 AGCAGATTGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* *
65901048 AGCAAATTGAAGATAACAGATTTGGCATCTCTGTATTAGACAGGG
1 AGCAGATTGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* * *
65901093 AGCAGATTAAAGA-AGCAGATTTGGCGTCTCTGTATTAGACGGGG
1 AGCAGATTGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* * *
65901137 AGCAGATCGAAGATAACAAATTTGGCGTCTCTGTATTAGACGGGG
1 AGCAGATTGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
** *
65901182 AGCAGATCAAAGATAGCAGAT
1 AGCAGATTGAAGATAACAGAT
65901203 GTCGCCTTCC
Statistics
Matches: 137, Mismatches: 17, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
44 39 0.28
45 98 0.72
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.24
Consensus pattern (45 bp):
AGCAGATTGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
Found at i:65901136 original size:89 final size:90
Alignment explanation
Indices: 65901003--65901202 Score: 305
Period size: 89 Copynumber: 2.2 Consensus size: 90
65900993 TTTACATCGA
* * *
65901003 AGCAGATCCAAGAT-GACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATTGAAGATAACAG
1 AGCAGATCAAAGATAG-CAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAA
65901067 ATTTGGCATCTCTGTATTAGACAGGG
65 ATTTGGCATCTCTGTATTAGACAGGG
* * *
65901093 AGCAGATTAAAGA-AGCAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACAAA
1 AGCAGATCAAAGATAGCAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAAA
* *
65901157 TTTGGCGTCTCTGTATTAGACGGGG
66 TTTGGCATCTCTGTATTAGACAGGG
65901182 AGCAGATCAAAGATAGCAGAT
1 AGCAGATCAAAGATAGCAGAT
65901203 GTCGCCTTCC
Statistics
Matches: 99, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
89 80 0.81
90 19 0.19
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.24
Consensus pattern (90 bp):
AGCAGATCAAAGATAGCAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAAA
TTTGGCATCTCTGTATTAGACAGGG
Found at i:65901545 original size:19 final size:19
Alignment explanation
Indices: 65901521--65901611 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
65901511 ATAATCTTCA
65901521 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
65901540 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
65901559 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
65901576 ATGAT-TGCGATCTTAGAT
1 ATGATATGCAATCTTAGAT
65901594 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
65901612 GATTTAATTT
Statistics
Matches: 67, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
17 16 0.24
18 15 0.22
19 36 0.54
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:65901596 original size:35 final size:37
Alignment explanation
Indices: 65901521--65901611 Score: 141
Period size: 35 Copynumber: 2.5 Consensus size: 37
65901511 ATAATCTTCA
65901521 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGATA-GCAATCTTAGATATGATATGCAATCTTAGAT
*
65901559 ATGATA-CAATCTTAGATATGAT-TGCGATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
65901594 ATGATATGCAATCTTAGA
1 ATGATA-GCAATCTTAGA
65901612 GATTTAATTT
Statistics
Matches: 50, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
35 18 0.36
36 16 0.32
37 10 0.20
38 6 0.12
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.36
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:65908215 original size:43 final size:43
Alignment explanation
Indices: 65908078--65908271 Score: 202
Period size: 43 Copynumber: 4.6 Consensus size: 43
65908068 TAAGCTCGTA
* * * * *
65908078 CAATGCC-ATATCCCTGATATGGTCTTACATGCT-ATCACATAT
1 CAATGCCAATGTCCCAGACATGGTCTTACACG-TAATCTCATAT
** * *
65908120 TGATGCCACTGTCCCAGACAGGGTCTTACACG-AA--TCATAT
1 CAATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCATAT
*
65908160 -ACATGCCAATGTCCCAAACATGGTCTTACACGTAATCTCATAT
1 CA-ATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCATAT
** * *
65908203 CAATGCCAATGTCTTAGACATGGTCTTACACATAATCTCATAG
1 CAATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCATAT
65908246 CAATGCCAATGTCCCAGACATGGTCT
1 CAATGCCAATGTCCCAGACATGGTCT
65908272 CATAGGAAAT
Statistics
Matches: 125, Mismatches: 20, Indels: 13
0.79 0.13 0.08
Matches are distributed among these distances:
40 32 0.26
41 2 0.02
42 6 0.05
43 84 0.67
44 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (43 bp):
CAATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCATAT
Found at i:65916382 original size:28 final size:28
Alignment explanation
Indices: 65916315--65916375 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
65916305 ATATTTTCCT
*
65916315 TCGCACACTTAGTGCTCGATAATCAAAC
1 TCGCACACTTAGTGCTCGATAACCAAAC
*
65916343 TCGTACACTTAGTGCTC-ATTAACCAAAC
1 TCGCACACTTAGTGCTCGA-TAACCAAAC
65916371 TCGCA
1 TCGCA
65916376 TGCTTAGCGA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 1 0.03
28 28 0.97
ACGTcount: A:0.31, C:0.30, G:0.13, T:0.26
Consensus pattern (28 bp):
TCGCACACTTAGTGCTCGATAACCAAAC
Found at i:65923211 original size:16 final size:16
Alignment explanation
Indices: 65923190--65923221 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
65923180 CTTATACATG
65923190 CCATAAGTTTAAACTT
1 CCATAAGTTTAAACTT
65923206 CCATAAGTTTAAACTT
1 CCATAAGTTTAAACTT
65923222 AAGCTTTCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.38
Consensus pattern (16 bp):
CCATAAGTTTAAACTT
Found at i:65923983 original size:28 final size:28
Alignment explanation
Indices: 65923933--65923987 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
65923923 TTTCCTTCGC
*
65923933 ACACTTAGTGCTCGATAATCAAACTCGT
1 ACACTTAGTGCTCGATAACCAAACTCGT
*
65923961 ACACTTAGTGCT-TATTAACCAAACTCG
1 ACACTTAGTGCTCGA-TAACCAAACTCG
65923988 CATGCTTAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 1 0.04
28 23 0.96
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.29
Consensus pattern (28 bp):
ACACTTAGTGCTCGATAACCAAACTCGT
Found at i:65933284 original size:46 final size:45
Alignment explanation
Indices: 65933176--65933341 Score: 199
Period size: 46 Copynumber: 3.6 Consensus size: 45
65933166 GGATACCGTG
* * * *
65933176 GTGTCTTTCAACCATGGTCTTATTTATTCTT-AACTTGATGCCATA
1 GTGTCTTTCAACCATGGTCTTATTCATT-TTCATCATGTTGCCATA
65933221 GTGTCTTTCAACCATGGTCTTATTCATTTTCCATCATGTTGCCATA
1 GTGTCTTTCAACCATGGTCTTATTCATTTT-CATCATGTTGCCATA
* * * * *
65933267 GTGTCTTTCAACTATGGTCTTATTTATTCTCTGTCATGTTTCCATA
1 GTGTCTTTCAACCATGGTCTTATTCATTTTC-ATCATGTTGCCATA
* *
65933313 GCGTCTTTCAACTATGGTCTTATTCATTT
1 GTGTCTTTCAACCATGGTCTTATTCATTT
65933342 GATTCGTGTT
Statistics
Matches: 106, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
44 2 0.02
45 28 0.26
46 76 0.72
ACGTcount: A:0.19, C:0.21, G:0.13, T:0.46
Consensus pattern (45 bp):
GTGTCTTTCAACCATGGTCTTATTCATTTTCATCATGTTGCCATA
Found at i:65936539 original size:42 final size:42
Alignment explanation
Indices: 65936492--65936575 Score: 100
Period size: 41 Copynumber: 2.0 Consensus size: 42
65936482 GAAAAAAATT
*
65936492 AAAAATCCCAATAACATTTTTGATT-TTTG-TTTTTAATTTTTC
1 AAAAAT-CCAAAAACATTTTT-ATTGTTTGTTTTTTAATTTTTC
* *
65936534 AAAAATCCAAAAATATTTTTCTTGTTTGTTTTTTTAATTTTT
1 AAAAATCCAAAAACATTTTTATTGTTTG-TTTTTTAATTTTT
65936576 GTTATTGCAT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
40 2 0.06
41 16 0.44
42 6 0.17
43 12 0.33
ACGTcount: A:0.31, C:0.10, G:0.05, T:0.55
Consensus pattern (42 bp):
AAAAATCCAAAAACATTTTTATTGTTTGTTTTTTAATTTTTC
Found at i:65940827 original size:43 final size:42
Alignment explanation
Indices: 65940692--65940850 Score: 142
Period size: 43 Copynumber: 3.7 Consensus size: 42
65940682 TATGTGTTAT
* *
65940692 CATGTAAGACCATGTCTGGGACATTGGTATCGACATATGATTTA
1 CATGTAAGACCATGTCTGGGACA-TGGCATCGACATTTGA-TTA
* * * * *
65940736 CATGTAGGACCATGTCTGGGACATCGACATTG-TATTTGATTT
1 CATGTAAGACCATGTCTGGGACAT-GGCATCGACATTTGATTA
**
65940778 TGTGTAAGACTC-TGTCTGGGACAGTGGCATCGACATTTGATTA
1 CATGTAAGAC-CATGTCTGGGACA-TGGCATCGACATTTGATTA
** *
65940821 CATGTAAGACCACATTTGGGACATTGGCAT
1 CATGTAAGACCATGTCTGGGACA-TGGCAT
65940851 TGTACAAGAT
Statistics
Matches: 90, Mismatches: 20, Indels: 11
0.74 0.17 0.09
Matches are distributed among these distances:
42 26 0.29
43 38 0.42
44 26 0.29
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (42 bp):
CATGTAAGACCATGTCTGGGACATGGCATCGACATTTGATTA
Found at i:65940862 original size:85 final size:86
Alignment explanation
Indices: 65940694--65940863 Score: 209
Period size: 85 Copynumber: 2.0 Consensus size: 86
65940684 TGTGTTATCA
* * * **
65940694 TGTAAGACCATGTCTGGGACATTGGTATCGACATATGATTTACATGTAGGACCATGTCTGGGACA
1 TGTAAGACCATGTCTGGGACAGTGGCATCGACATATGATTTACATGTAAGACCACATCTGGGACA
***
65940759 TCGACATTGTATTTGATTTTG
66 TCGACATTGTACAAGATTTTG
* *
65940780 TGTAAGACTC-TGTCTGGGACAGTGGCATCGACATTTGA-TTACATGTAAGACCACATTTGGGAC
1 TGTAAGAC-CATGTCTGGGACAGTGGCATCGACATATGATTTACATGTAAGACCACATCTGGGAC
* *
65940843 ATTGGCATTGTACAAGATTTT
65 ATCGACATTGTACAAGATTTT
65940864 AGAGCTATCT
Statistics
Matches: 71, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
85 37 0.52
86 33 0.46
87 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (86 bp):
TGTAAGACCATGTCTGGGACAGTGGCATCGACATATGATTTACATGTAAGACCACATCTGGGACA
TCGACATTGTACAAGATTTTG
Found at i:65948532 original size:10 final size:10
Alignment explanation
Indices: 65948517--65948541 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
65948507 AGGCTCAAAT
65948517 TTTTTTTTGA
1 TTTTTTTTGA
65948527 TTTTTTTTGA
1 TTTTTTTTGA
65948537 TTTTT
1 TTTTT
65948542 CTATTTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.08, C:0.00, G:0.08, T:0.84
Consensus pattern (10 bp):
TTTTTTTTGA
Found at i:65949615 original size:17 final size:16
Alignment explanation
Indices: 65949576--65949615 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
65949566 GGTAGGGAGT
*
65949576 AACAAATGAACAAAAA
1 AACAAATGAAAAAAAA
*
65949592 GACAAATGAAAAAAAA
1 AACAAATGAAAAAAAA
65949608 AACTAAAT
1 AAC-AAAT
65949616 TTAAATACTC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
16 16 0.80
17 4 0.20
ACGTcount: A:0.72, C:0.10, G:0.07, T:0.10
Consensus pattern (16 bp):
AACAAATGAAAAAAAA
Found at i:65954492 original size:39 final size:40
Alignment explanation
Indices: 65954431--65954512 Score: 130
Period size: 39 Copynumber: 2.1 Consensus size: 40
65954421 TATTCGGATG
* *
65954431 ATATCCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACT
1 ATATCCAGACTAAGATCCGAAGGCAATTGTGCTAGTTACT
*
65954471 ATATCCAGACT-AGATCCGAAGGCAATTGTGCTAGTTATT
1 ATATCCAGACTAAGATCCGAAGGCAATTGTGCTAGTTACT
65954510 ATA
1 ATA
65954513 ACCGGGTTAA
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
39 29 0.74
40 10 0.26
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.30
Consensus pattern (40 bp):
ATATCCAGACTAAGATCCGAAGGCAATTGTGCTAGTTACT
Found at i:65954548 original size:40 final size:40
Alignment explanation
Indices: 65954486--65954586 Score: 150
Period size: 40 Copynumber: 2.5 Consensus size: 40
65954476 CAGACTAGAT
*
65954486 CCGAAGGCAATT-GTGCTAGTTATTATAACCGGGTTAAGTC
1 CCGAAGGC-ATTCGTGCTGGTTATTATAACCGGGTTAAGTC
* *
65954526 CCGAAGGCATTCGTGCGGGTTATTATAACTGGGTTAAGTC
1 CCGAAGGCATTCGTGCTGGTTATTATAACCGGGTTAAGTC
*
65954566 CCAAAGGCATTCGTGCTGGTT
1 CCGAAGGCATTCGTGCTGGTT
65954587 GTTACATCCG
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
39 3 0.05
40 52 0.95
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.30
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCTGGTTATTATAACCGGGTTAAGTC
Found at i:65957811 original size:32 final size:33
Alignment explanation
Indices: 65957768--65957831 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
65957758 ACGAAGTCAC
* *
65957768 CAGATACATATAT-TGTGGCTAGGCCACCAGAA
1 CAGATACATATATGTGTGGCGAAGCCACCAGAA
*
65957800 CAGATATATATATGTGTGGCGAAGCCACCAGA
1 CAGATACATATATGTGTGGCGAAGCCACCAGA
65957832 TTGTAGCGAG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 12 0.43
33 16 0.57
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.22
Consensus pattern (33 bp):
CAGATACATATATGTGTGGCGAAGCCACCAGAA
Done.