Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 200 of 255
Found at i:66624523 original size:43 final size:41
Alignment explanation
Indices: 66624410--66624558 Score: 146
Period size: 41 Copynumber: 3.6 Consensus size: 41
66624400 ACTTTTAATA
66624410 ATTCACCGGCATAAAGCCTGCTAGGCAT-AAGCCTGTATTAC
1 ATTCACCGGCAT-AAGCCTGCTAGGCATAAAGCCTGTATTAC
* * * *
66624451 A--CACCGGC-TCAAAGCCTGCTAGACTTAAAGTCTGATATTAT
1 ATTCACCGGCAT--AAGCCTGCTAGGCATAAAGCCTG-TATTAC
*
66624492 ATTCACCGGCAATAAGCCTGCTAGGCATAAAGCTTG-ATTAC
1 ATTCACCGGC-ATAAGCCTGCTAGGCATAAAGCCTGTATTAC
* *
66624533 ATTCACCAGCATAATGCTTGCTAGGC
1 ATTCACCGGCATAA-GCCTGCTAGGC
66624559 TTACAGCCCG
Statistics
Matches: 89, Mismatches: 11, Indels: 16
0.77 0.09 0.14
Matches are distributed among these distances:
38 1 0.01
39 21 0.24
40 10 0.11
41 30 0.34
43 26 0.29
45 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (41 bp):
ATTCACCGGCATAAGCCTGCTAGGCATAAAGCCTGTATTAC
Found at i:66628367 original size:16 final size:16
Alignment explanation
Indices: 66628346--66628380 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
66628336 ATGTATTGGC
66628346 AAAAGCCAAAATGCCG
1 AAAAGCCAAAATGCCG
*
66628362 AAAAGCCGAAATGCCG
1 AAAAGCCAAAATGCCG
66628378 AAA
1 AAA
66628381 GTTTGGTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.51, C:0.23, G:0.20, T:0.06
Consensus pattern (16 bp):
AAAAGCCAAAATGCCG
Found at i:66628689 original size:29 final size:29
Alignment explanation
Indices: 66628604--66628705 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 29
66628594 TGAATGTGAC
* * *
66628604 TGGGCCTAACGGGCCATATAAATCTAATT
1 TGGGCCTAATGGGCCATATAAATATGATT
* **
66628633 TGGGCCTAATAGGCCATATAAAGGTGATT
1 TGGGCCTAATGGGCCATATAAATATGATT
* *
66628662 TAGGCCTAATGGGCCATATGAATATGA-T
1 TGGGCCTAATGGGCCATATAAATATGATT
*
66628690 TGGGCTTAATGGGCCA
1 TGGGCCTAATGGGCCA
66628706 GATACATGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
28 15 0.25
29 46 0.75
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.27
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAATATGATT
Found at i:66633722 original size:3 final size:3
Alignment explanation
Indices: 66633716--66633741 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
66633706 TACTACTTGA
66633716 ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT
66633742 CATTGAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:66635737 original size:16 final size:17
Alignment explanation
Indices: 66635716--66635752 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
66635706 TGTAACGCCA
66635716 CAAAAATCCCGAAA-CC
1 CAAAAATCCCGAAATCC
*
66635732 CAAAAATCCTGAAATCC
1 CAAAAATCCCGAAATCC
66635749 CAAA
1 CAAA
66635753 CTTTCTTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.51, C:0.32, G:0.05, T:0.11
Consensus pattern (17 bp):
CAAAAATCCCGAAATCC
Found at i:66636837 original size:8 final size:8
Alignment explanation
Indices: 66636820--66636862 Score: 52
Period size: 8 Copynumber: 5.4 Consensus size: 8
66636810 ATGTATCGGC
66636820 AAAAGCCG
1 AAAAGCCG
*
66636828 AAATGCCG
1 AAAAGCCG
*
66636836 AAAAGCTG
1 AAAAGCCG
66636844 AAATA-CCG
1 AAA-AGCCG
66636852 AAAAGCCG
1 AAAAGCCG
66636860 AAA
1 AAA
66636863 GTTTGGCTGT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
7 1 0.03
8 27 0.93
9 1 0.03
ACGTcount: A:0.51, C:0.21, G:0.21, T:0.07
Consensus pattern (8 bp):
AAAAGCCG
Found at i:66636841 original size:16 final size:16
Alignment explanation
Indices: 66636820--66636862 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
66636810 ATGTATCGGC
*
66636820 AAAAGCCGAAATGCCG
1 AAAAGCCGAAATACCG
*
66636836 AAAAGCTGAAATACCG
1 AAAAGCCGAAATACCG
66636852 AAAAGCCGAAA
1 AAAAGCCGAAA
66636863 GTTTGGCTGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.51, C:0.21, G:0.21, T:0.07
Consensus pattern (16 bp):
AAAAGCCGAAATACCG
Found at i:66637004 original size:18 final size:19
Alignment explanation
Indices: 66636971--66637006 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
66636961 ATTTGGCCAT
66636971 ATGGGCCGTAATGGGCTAA
1 ATGGGCCGTAATGGGCTAA
*
66636990 ATGGGCC-TGATGGGCTA
1 ATGGGCCGTAATGGGCTA
66637007 TTGGGCCCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.22, C:0.17, G:0.39, T:0.22
Consensus pattern (19 bp):
ATGGGCCGTAATGGGCTAA
Found at i:66637121 original size:29 final size:27
Alignment explanation
Indices: 66637078--66637185 Score: 128
Period size: 29 Copynumber: 3.9 Consensus size: 27
66637068 CATGATTATG
* *
66637078 AATGTGACTGGGCCTAACGGGCCATAT
1 AATGTGATTGGGCCTAATGGGCCATAT
66637105 AAATGTGATTTGGGCCTAATGGGCCATAT
1 -AATGTGA-TTGGGCCTAATGGGCCATAT
*
66637134 -AGGTGATTCGGGCCTAATGGGCCATAT
1 AATGTGATT-GGGCCTAATGGGCCATAT
* *
66637161 GAATATGATTGGGCTTAATGGGCCA
1 -AATGTGATTGGGCCTAATGGGCCA
66637186 GATACAGGTA
Statistics
Matches: 70, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
26 2 0.03
27 23 0.33
28 21 0.30
29 24 0.34
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.27
Consensus pattern (27 bp):
AATGTGATTGGGCCTAATGGGCCATAT
Found at i:66637147 original size:27 final size:28
Alignment explanation
Indices: 66637087--66637194 Score: 112
Period size: 27 Copynumber: 3.8 Consensus size: 28
66637077 GAATGTGACT
* * *
66637087 GGGCCTAACGGGCCATATAAATGTGATTT
1 GGGCCTAATGGGCCATAT-AAGGTGATTC
66637116 GGGCCTAATGGGCCATAT-AGGTGATTC
1 GGGCCTAATGGGCCATATAAGGTGATTC
**
66637143 GGGCCTAATGGGCCATATGAATATGATT-
1 GGGCCTAATGGGCCATAT-AAGGTGATTC
* *
66637171 GGGCTTAATGGGCCAGATACAGGT
1 GGGCCTAATGGGCCATATA-AGGT
66637195 ATGTGAAATT
Statistics
Matches: 67, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
27 26 0.39
28 18 0.27
29 23 0.34
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (28 bp):
GGGCCTAATGGGCCATATAAGGTGATTC
Found at i:66640608 original size:91 final size:91
Alignment explanation
Indices: 66640494--66640676 Score: 366
Period size: 91 Copynumber: 2.0 Consensus size: 91
66640484 AAGAGGTCAC
66640494 ACTATCACGAGTAGTAATATGGCATGTATAGCTAGACTCACATACGCTAGGTTAGTCCGAGAATC
1 ACTATCACGAGTAGTAATATGGCATGTATAGCTAGACTCACATACGCTAGGTTAGTCCGAGAATC
66640559 GACTAAACCATAGCTCTGATACCATT
66 GACTAAACCATAGCTCTGATACCATT
66640585 ACTATCACGAGTAGTAATATGGCATGTATAGCTAGACTCACATACGCTAGGTTAGTCCGAGAATC
1 ACTATCACGAGTAGTAATATGGCATGTATAGCTAGACTCACATACGCTAGGTTAGTCCGAGAATC
66640650 GACTAAACCATAGCTCTGATACCATT
66 GACTAAACCATAGCTCTGATACCATT
66640676 A
1 A
66640677 AATGTAACAC
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
91 92 1.00
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (91 bp):
ACTATCACGAGTAGTAATATGGCATGTATAGCTAGACTCACATACGCTAGGTTAGTCCGAGAATC
GACTAAACCATAGCTCTGATACCATT
Found at i:66647892 original size:40 final size:40
Alignment explanation
Indices: 66647822--66648023 Score: 268
Period size: 40 Copynumber: 5.0 Consensus size: 40
66647812 GGATTTAACT
* *
66647822 GGATATAGCT-ACTCGCTC-AATGCCTTCGGGACATAGCCC
1 GGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCC
*
66647861 GGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGCCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
*
66647901 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCT
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
* *
66647941 GGATGTAATAACTCGCACAAATGCCTTCGGGACTTAGCCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
* *
66647981 AGA-ACTAGTCACTAGCGCA-AAATGCCTTCGGGACTTAGCCC
1 GGATA-TAGTAACT--CGCACAAATGCCTTCGGGACTTAGCCC
66648022 GG
1 GG
66648024 TTATCATCCA
Statistics
Matches: 146, Mismatches: 12, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
38 1 0.01
39 15 0.10
40 103 0.71
41 23 0.16
42 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
Found at i:66664103 original size:40 final size:40
Alignment explanation
Indices: 66664018--66664234 Score: 264
Period size: 40 Copynumber: 5.5 Consensus size: 40
66664008 AAGCCAAGTA
* * * *
66664018 CCTTCGGGATTTA-ACCGAATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
66664056 ACTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
66664096 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
66664136 CCTTCGAGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
66664176 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
66664217 CCTTCGGGACTTAGCCCG
1 CCTTCGGGACTTAGCCCG
66664235 ATTATCATCT
Statistics
Matches: 157, Mismatches: 16, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
38 11 0.07
39 16 0.10
40 103 0.66
41 23 0.15
42 4 0.03
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:66668255 original size:24 final size:24
Alignment explanation
Indices: 66668218--66668299 Score: 112
Period size: 24 Copynumber: 3.4 Consensus size: 24
66668208 CTGAAGGCCT
* *
66668218 AGCCTCTTTCAATAACT-GGGACAAA
1 AGCC-CTTTTAATAACTAGGG-CATA
*
66668243 ATCCCTTTTAATAACTAGGGCATA
1 AGCCCTTTTAATAACTAGGGCATA
66668267 AGCCCTTTTAATAACTAGGGCATA
1 AGCCCTTTTAATAACTAGGGCATA
66668291 AGCCCTTTT
1 AGCCCTTTT
66668300 GCACTTCCTC
Statistics
Matches: 52, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
24 46 0.88
25 6 0.12
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTAGGGCATA
Found at i:66668375 original size:20 final size:20
Alignment explanation
Indices: 66668350--66668408 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
66668340 TATGAGTACA
*
66668350 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATG
66668370 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATG
66668390 TCATGTGCATATCATACAT
1 TCATGTGCATATCATACAT
66668409 ACCATGTTTA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATG
Found at i:66668414 original size:20 final size:20
Alignment explanation
Indices: 66668349--66668415 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
66668339 TTATGAGTAC
66668349 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
66668369 TTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
66668389 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
66668409 ACCATGT
1 ATCATGT
66668416 TTATCAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.31, C:0.21, G:0.12, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:66674458 original size:43 final size:42
Alignment explanation
Indices: 66674411--66674509 Score: 119
Period size: 42 Copynumber: 2.3 Consensus size: 42
66674401 TCCTAGACGT
*
66674411 GGTCTTACATGTAATCAAATATCCATGCC-ACTATCCCAGACAG
1 GGTCTTACATGTAATCAAATA-CAATGCCGA-TATCCCAGACAG
* * * *
66674454 GGTCTTACATGAAATCATATACAATGCCGATGTCCCAGACAT
1 GGTCTTACATGTAATCAAATACAATGCCGATATCCCAGACAG
*
66674496 GGTCTTACACGTAA
1 GGTCTTACATGTAA
66674510 ATCTCAAGTT
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
42 28 0.58
43 20 0.42
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.26
Consensus pattern (42 bp):
GGTCTTACATGTAATCAAATACAATGCCGATATCCCAGACAG
Found at i:66674494 original size:42 final size:41
Alignment explanation
Indices: 66674388--66674504 Score: 119
Period size: 43 Copynumber: 2.8 Consensus size: 41
66674378 AGAAAGCTTG
* * *
66674388 TACAATGCCAAAGTCCTAGAC-GTGGTCTTACATGTAATCAAA
1 TACAATGCC-ATGTCCCAGACAG-GGTCTTACATGAAATCAAA
* * *
66674430 TATCCATGCCACTATCCCAGACAGGGTCTTACATGAAATCATA
1 TA-CAATGCCA-TGTCCCAGACAGGGTCTTACATGAAATCAAA
*
66674473 TACAATGCCGATGTCCCAGACATGGTCTTACA
1 TACAATGCC-ATGTCCCAGACAGGGTCTTACA
66674505 CGTAAATCTC
Statistics
Matches: 62, Mismatches: 9, Indels: 8
0.78 0.11 0.10
Matches are distributed among these distances:
42 28 0.45
43 33 0.53
44 1 0.02
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (41 bp):
TACAATGCCATGTCCCAGACAGGGTCTTACATGAAATCAAA
Found at i:66686586 original size:56 final size:56
Alignment explanation
Indices: 66686319--66686587 Score: 367
Period size: 56 Copynumber: 4.8 Consensus size: 56
66686309 ACATTCTTGA
* **
66686319 GTTGGCATCGTTATGTGATTCCGATATGTGTGTGCGAGTAAGAATACATTTAATAC
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACATTTAATAC
* * *
66686375 ATTGGCATCGATATGTGATTTCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACATTTAATAC
* * * * * *
66686431 GTTAGCACCGATATGTGATTCTGATATGTGTGTGTGAGTAAGATCACGTTTAATAC
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACATTTAATAC
* * *
66686487 GTTGGCATCGACATGTGATTCCGATATGTGTGTGCAAGTAAGACCAAATTTAATAC
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACATTTAATAC
* * * *
66686543 GTTGGCATCAATATGTGATTCCTATATGTGTTTACGAGTAAGACC
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACC
66686588 CTGTCTGGGA
Statistics
Matches: 185, Mismatches: 28, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
56 185 1.00
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.34
Consensus pattern (56 bp):
GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACATTTAATAC
Found at i:66689352 original size:27 final size:28
Alignment explanation
Indices: 66689293--66689354 Score: 74
Period size: 26 Copynumber: 2.2 Consensus size: 28
66689283 TTACTTAGAC
66689293 CCCCTATATATGATAAAATGACTATTTT
1 CCCCTATATATGATAAAATGACTATTTT
* **
66689321 TCCCT-TATATG-TAAGGTGACTATTTT
1 CCCCTATATATGATAAAATGACTATTTT
66689347 GCCCCTAT
1 -CCCCTAT
66689355 GTGATGTATA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 13 0.46
27 10 0.36
28 5 0.18
ACGTcount: A:0.27, C:0.21, G:0.11, T:0.40
Consensus pattern (28 bp):
CCCCTATATATGATAAAATGACTATTTT
Found at i:66689705 original size:18 final size:18
Alignment explanation
Indices: 66689680--66689730 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
66689670 CACTGTTTGA
66689680 ACTGTTACTGCAATGATT
1 ACTGTTACTGCAATGATT
* * *
66689698 ATTGTTACTGCATTGTTT
1 ACTGTTACTGCAATGATT
*
66689716 ACTGTTACTGTAATG
1 ACTGTTACTGCAATG
66689731 GGCTAAGGCC
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.24, C:0.14, G:0.18, T:0.45
Consensus pattern (18 bp):
ACTGTTACTGCAATGATT
Found at i:66703319 original size:108 final size:109
Alignment explanation
Indices: 66703167--66703367 Score: 325
Period size: 108 Copynumber: 1.8 Consensus size: 109
66703157 ATCCTTTTGA
* *
66703167 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCATTGCCTTATGAAA-TCACCAA-
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCATTGCCTTA-GAAACTCACCAAT
66703230 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
66703275 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCATTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCATTGCCTTAGAAA-CTCACCAAT
66703340 TGCCATGCCTTGGCATGGTCTTACATGG
65 TGCCATGCCTTGGCATGGTCTTACATGG
66703368 TATCCTTAAA
Statistics
Matches: 85, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
107 4 0.05
108 47 0.55
109 6 0.07
110 28 0.33
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.34
Consensus pattern (109 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCATTGCCTTAGAAACTCACCAATT
GCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:66703322 original size:55 final size:54
Alignment explanation
Indices: 66703120--66703371 Score: 248
Period size: 55 Copynumber: 4.7 Consensus size: 54
66703110 ACACGGGTAC
* * * * * *
66703120 CTTACCATTTCCATGACTTGTCATGGTCTTACATGGTATCCTT---TT-GA-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCATTGCCTTATAGAA
* *
66703169 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCATTGCCTTAT-GAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCATTGCCTTATAGAA
* * * * * *
66703222 ATCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCATTGCCTTATAG-AA
* * * * *
66703277 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCATTGCCTTAGA-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCATTGCCTTATAGAA
*
66703330 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATC
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATC
66703372 CTTAAACCCT
Statistics
Matches: 165, Mismatches: 29, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
49 39 0.24
52 2 0.01
53 46 0.28
54 8 0.05
55 70 0.42
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCATTGCCTTATAGAA
Found at i:66706059 original size:40 final size:41
Alignment explanation
Indices: 66706014--66706109 Score: 104
Period size: 41 Copynumber: 2.3 Consensus size: 41
66706004 GGTATTTGGT
* *
66706014 ACTAAGTGTGTGAT-TCAAAATAGCTTCGATTATTTGAGGC
1 ACTAAGTGTGCGATATCAAAATAGCTTCGATTAATTGAGGC
* * * *
66706054 ACTAAGTGTGCGATATCGAGATAGCTTCGGTTAATTGAAATGAC
1 ACTAAGTGTGCGATATCAAAATAGCTTCGATTAATTG--A-GGC
66706098 ACTAAGTGTGCG
1 ACTAAGTGTGCG
66706110 GAATCGTTCT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
40 13 0.28
41 18 0.39
43 1 0.02
44 14 0.30
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (41 bp):
ACTAAGTGTGCGATATCAAAATAGCTTCGATTAATTGAGGC
Found at i:66707934 original size:43 final size:44
Alignment explanation
Indices: 66707875--66708250 Score: 366
Period size: 43 Copynumber: 8.8 Consensus size: 44
66707865 CAATGCTAAC
* *
66707875 GTCCCAGA-TGTGGTCTTACATATAATCACATATCGATGCCACT
1 GTCCCAGACAGTGGTCTTACACATAATCACATATCGATGCCACT
* * *
66707918 GTCCCAGACAG-AGTCTTACACGTAATCACATATCGATGCCAAT
1 GTCCCAGACAGTGGTCTTACACATAATCACATATCGATGCCACT
** *
66707961 GTCTTAGA-TGTGGTCTTACACATAATCACATATCGATGCCAGC-
1 GTCCCAGACAGTGGTCTTACACATAATCACATATCGATGCCA-CT
* ** **
66708004 GTCCCATAC-GTGGTCTTACATGTAATCACATATTAATGCCAAC-
1 GTCCCAGACAGTGGTCTTACACATAATCACATATCGATGCC-ACT
* *
66708047 GTCCCAGACA-TGGTCATACACATATTCACATATCGATGCCAAC-
1 GTCCCAGACAGTGGTCTTACACATAATCACATATCGATGCC-ACT
* *
66708090 GTCCCAGAC-GTGGTCTTACACGTAATCACATATCGATGCCAAT
1 GTCCCAGACAGTGGTCTTACACATAATCACATATCGATGCCACT
** * * *
66708133 GTCCCA-A-ATGTTATCTTACACGTAATCACATATCGATTCCAAT
1 GTCCCAGACA-GTGGTCTTACACATAATCACATATCGATGCCACT
* *
66708176 GTCCCAGA-TGTGGTCTTACACATATTCACATATCGATGCCAAC-
1 GTCCCAGACAGTGGTCTTACACATAATCACATATCGATGCC-ACT
* * *
66708219 ATCCCAGA-TGTGGTCTTACACGTAATCACATA
1 GTCCCAGACAGTGGTCTTACACATAATCACATA
66708251 ATGGAATCAC
Statistics
Matches: 279, Mismatches: 42, Indels: 24
0.81 0.12 0.07
Matches are distributed among these distances:
42 3 0.01
43 272 0.97
44 4 0.01
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (44 bp):
GTCCCAGACAGTGGTCTTACACATAATCACATATCGATGCCACT
Found at i:66707998 original size:86 final size:85
Alignment explanation
Indices: 66707867--66708250 Score: 482
Period size: 86 Copynumber: 4.5 Consensus size: 85
66707857 ATATCGTACA
* * *
66707867 ATGCTAACGTCCCAGATGTGGTCTTACATATAATCACATATCGATGCCACTGTCCCAGACAG-AG
1 ATGCCAACGTCCCAGATGTGGTCTTACACATAATCACATATCGATGCCAC-GTCCCAGAC-GTGG
66707931 TCTTACACGTAATCACATATCG
64 TCTTACACGTAATCACATATCG
* ** *
66707953 ATGCCAATGTCTTAGATGTGGTCTTACACATAATCACATATCGATGCCAGCGTCCCATACGTGGT
1 ATGCCAACGTCCCAGATGTGGTCTTACACATAATCACATATCGATGCCA-CGTCCCAGACGTGGT
* **
66708018 CTTACATGTAATCACATATTA
65 CTTACACGTAATCACATATCG
** * *
66708039 ATGCCAACGTCCCAGACATGGTCATACACATATTCACATATCGATGCCAACGTCCCAGACGTGGT
1 ATGCCAACGTCCCAGATGTGGTCTTACACATAATCACATATCGATGCC-ACGTCCCAGACGTGGT
66708104 CTTACACGTAATCACATATCG
65 CTTACACGTAATCACATATCG
* * ** * * * *
66708125 ATGCCAATGTCCCAAATGTTATCTTACACGTAATCACATATCGATTCCAATGTCCCAGATGTGGT
1 ATGCCAACGTCCCAGATGTGGTCTTACACATAATCACATATCGATGCC-ACGTCCCAGACGTGGT
* *
66708190 CTTACACATATTCACATATCG
65 CTTACACGTAATCACATATCG
* *
66708211 ATGCCAACATCCCAGATGTGGTCTTACACGTAATCACATA
1 ATGCCAACGTCCCAGATGTGGTCTTACACATAATCACATA
66708251 ATGGAATCAC
Statistics
Matches: 255, Mismatches: 40, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
85 1 0.00
86 252 0.99
87 2 0.01
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (85 bp):
ATGCCAACGTCCCAGATGTGGTCTTACACATAATCACATATCGATGCCACGTCCCAGACGTGGTC
TTACACGTAATCACATATCG
Found at i:66708104 original size:129 final size:129
Alignment explanation
Indices: 66707867--66708250 Score: 511
Period size: 129 Copynumber: 3.0 Consensus size: 129
66707857 ATATCGTACA
* * *
66707867 ATGCTAACGTCCCAGATGTGGTCTTACATATAATCACATATCGATGCC-ACTGTCCCAGACA-GA
1 ATGCCAACGTCCCAAATGTGGTCTTACATGTAATCACATATCGATGCCAAC-GTCCCAGACATG-
* * * ** *
66707930 GTCTTACACGTAATCACATATCGATGCCAATGTCTTAGATGTGGTCTTACACATAATCACATATC
64 GTCTTACACATATTCACATATCGATGCCAACGTCCCAGATGTGGTCTTACACGTAATCACATATC
66707995 G
129 G
* * * **
66707996 ATGCCAGCGTCCCATACGTGGTCTTACATGTAATCACATATTAATGCCAACGTCCCAGACATGGT
1 ATGCCAACGTCCCAAATGTGGTCTTACATGTAATCACATATCGATGCCAACGTCCCAGACATGGT
* *
66708061 CATACACATATTCACATATCGATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
66 CTTACACATATTCACATATCGATGCCAACGTCCCAGATGTGGTCTTACACGTAATCACATATCG
* ** * * * **
66708125 ATGCCAATGTCCCAAATGTTATCTTACACGTAATCACATATCGATTCCAATGTCCCAGATGTGGT
1 ATGCCAACGTCCCAAATGTGGTCTTACATGTAATCACATATCGATGCCAACGTCCCAGACATGGT
*
66708190 CTTACACATATTCACATATCGATGCCAACATCCCAGATGTGGTCTTACACGTAATCACATA
66 CTTACACATATTCACATATCGATGCCAACGTCCCAGATGTGGTCTTACACGTAATCACATA
66708251 ATGGAATCAC
Statistics
Matches: 222, Mismatches: 31, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
129 219 0.99
130 3 0.01
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (129 bp):
ATGCCAACGTCCCAAATGTGGTCTTACATGTAATCACATATCGATGCCAACGTCCCAGACATGGT
CTTACACATATTCACATATCGATGCCAACGTCCCAGATGTGGTCTTACACGTAATCACATATCG
Found at i:66709565 original size:28 final size:27
Alignment explanation
Indices: 66709541--66709622 Score: 112
Period size: 27 Copynumber: 3.0 Consensus size: 27
66709531 AGTCACCGAT
66709541 ACAGATATTTTGTGGCAGTGCCACCAGA
1 ACAGATA-TTTGTGGCAGTGCCACCAGA
* *
66709569 ACAGATATATGTGGCAGGGCCACCAGA
1 ACAGATATTTGTGGCAGTGCCACCAGA
66709596 ACAGATAATTTGTGGCA-TAGCCACCAG
1 ACAGAT-ATTTGTGGCAGT-GCCACCAG
66709623 GACGCTTCCT
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
27 24 0.50
28 24 0.50
ACGTcount: A:0.32, C:0.22, G:0.26, T:0.21
Consensus pattern (27 bp):
ACAGATATTTGTGGCAGTGCCACCAGA
Found at i:66709590 original size:27 final size:27
Alignment explanation
Indices: 66709523--66709622 Score: 112
Period size: 28 Copynumber: 3.6 Consensus size: 27
66709513 ATATAGAAAA
* *
66709523 TGTGACAGAGTCACC-GATACAGATATTT
1 TGTGGCAGAGCCACCAGA-ACAGATA-TT
* *
66709551 TGTGGCAGTGCCACCAGAACAGATATA
1 TGTGGCAGAGCCACCAGAACAGATATT
*
66709578 TGTGGCAGGGCCACCAGAACAGATAATT
1 TGTGGCAGAGCCACCAGAACAGAT-ATT
*
66709606 TGTGGCATAGCCACCAG
1 TGTGGCAGAGCCACCAG
66709623 GACGCTTCCT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
27 24 0.39
28 36 0.58
29 2 0.03
ACGTcount: A:0.31, C:0.22, G:0.26, T:0.21
Consensus pattern (27 bp):
TGTGGCAGAGCCACCAGAACAGATATT
Found at i:66709775 original size:28 final size:28
Alignment explanation
Indices: 66709728--66709819 Score: 166
Period size: 28 Copynumber: 3.3 Consensus size: 28
66709718 AAATTAACCC
* *
66709728 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
66709756 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
66709784 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
66709812 TAGGGGTA
1 TAGGGGTA
66709820 CTCTAGTACA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 62 1.00
ACGTcount: A:0.32, C:0.08, G:0.27, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAATGGTAATTTTGCATACA
Found at i:66719319 original size:55 final size:54
Alignment explanation
Indices: 66719218--66719361 Score: 139
Period size: 55 Copynumber: 2.6 Consensus size: 54
66719208 TGCGACATGG
* * *
66719218 CCATGGGCGAACCTGCCAAAAC-AACACGGGCATTCAACACACCCGTG-CCACGAAA
1 CCATGGGCGAACCTGTC-AAACTAACACGGGCGTGCAACACACCCGTGCCCAC--AA
* * ** *
66719273 CCATGGGCGAACCTGTCAAACTAGCACGGGCGTGCGACACGTCCGTGCCCATCAT
1 CCATGGGCGAACCTGTCAAACTAACACGGGCGTGCAACACACCCGTGCCCA-CAA
* **
66719328 CCTTGGGCGAACCTGTCAAGTTAACACGGGCGTG
1 CCATGGGCGAACCTGTCAAACTAACACGGGCGTG
66719362 GACCTATGTA
Statistics
Matches: 74, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
54 4 0.05
55 66 0.89
56 3 0.04
57 1 0.01
ACGTcount: A:0.26, C:0.33, G:0.26, T:0.15
Consensus pattern (54 bp):
CCATGGGCGAACCTGTCAAACTAACACGGGCGTGCAACACACCCGTGCCCACAA
Found at i:66722581 original size:22 final size:22
Alignment explanation
Indices: 66722553--66722596 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
66722543 AACCCCTAAT
66722553 GGCCCTACAGTGTCCATTAGTA
1 GGCCCTACAGTGTCCATTAGTA
66722575 GGCCCTACAGTGTCCATTAGTA
1 GGCCCTACAGTGTCCATTAGTA
66722597 ATTTAACCCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (22 bp):
GGCCCTACAGTGTCCATTAGTA
Found at i:66735479 original size:65 final size:65
Alignment explanation
Indices: 66735375--66735497 Score: 228
Period size: 65 Copynumber: 1.9 Consensus size: 65
66735365 CCCCTAGGGT
* *
66735375 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCTATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATATTATTATTATCTGA
66735440 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATATTATTAT
1 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATATTATTAT
66735498 CTGATGCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 56 1.00
ACGTcount: A:0.25, C:0.15, G:0.18, T:0.42
Consensus pattern (65 bp):
TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATATTATTATTATCTGA
Found at i:66736663 original size:43 final size:43
Alignment explanation
Indices: 66736609--66736994 Score: 479
Period size: 43 Copynumber: 9.0 Consensus size: 43
66736599 ATATCGTATA
* * *
66736609 ATGCCAATGTCCCAGACGTGGTGTTACATGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
*
66736652 ATGCC-ACTGTCCCAGATAG-GGTCTTACACGTAATCACATATCG
1 ATGCCAAC-GTCCCAGA-CGTGGTCTTACACGTAATCACATATCG
* *
66736695 ATGCCAACGTCCCAGACATGGTTTTACACGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* * * *
66736738 ATGCCAACGTCTCAGATGTGGTCTTACACATAATCACATATCA
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* * *
66736781 ATGCCAACGTCCTAGACGTGGTCTTACACGTATTCACATATCA
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* * * *
66736824 ATGCCAATGTCCTAGACGTGGTCTTACACATATTCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* * * *
66736867 ATGCCAACGTCCCAGACATTGTCTTACACATAATCACATATCA
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* *
66736910 ATGCCAACGTGCCAGACGTGGTCTTACACGTATTCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* * * * **
66736953 ATTCCAACTTCCCAAATGTGGTCTTACACGTCGTCACATATC
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATC
66736995 AGAATCACAT
Statistics
Matches: 299, Mismatches: 40, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
42 1 0.00
43 295 0.99
44 3 0.01
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
Found at i:66742090 original size:28 final size:28
Alignment explanation
Indices: 66742050--66742114 Score: 96
Period size: 28 Copynumber: 2.3 Consensus size: 28
66742040 ATGTACTAGA
*
66742050 ATACCCCTATGTATACAAAATTACC-CTT
1 ATACCCCTATGTATACAAAATGACCTC-T
*
66742078 ATACCCCTATGTATGCAAAATGACCTCT
1 ATACCCCTATGTATACAAAATGACCTCT
66742106 ATACCCCTA
1 ATACCCCTA
66742115 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
28 33 0.97
29 1 0.03
ACGTcount: A:0.34, C:0.31, G:0.06, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATACAAAATGACCTCT
Found at i:66742263 original size:28 final size:27
Alignment explanation
Indices: 66742230--66742301 Score: 99
Period size: 27 Copynumber: 2.6 Consensus size: 27
66742220 CTGGTGGCTA
*
66742230 TGCCACAAATTATCTGTTCTAGTGGCCC
1 TGCCACAAA-TATCTGTTCTAGTGGCAC
* *
66742258 TGCCACATATATCTGTTCTGGTGGCAC
1 TGCCACAAATATCTGTTCTAGTGGCAC
66742285 TGCCACAAAATATCTGT
1 TGCCAC-AAATATCTGT
66742302 ATCTGGTGAC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
27 22 0.56
28 17 0.44
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (27 bp):
TGCCACAAATATCTGTTCTAGTGGCAC
Found at i:66742281 original size:27 final size:27
Alignment explanation
Indices: 66742220--66742309 Score: 110
Period size: 28 Copynumber: 3.2 Consensus size: 27
66742210 AGGAAGCGTC
66742220 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* * *
66742248 CTAGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
66742275 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
66742304 CTGGTG
1 CTGGTG
66742310 ACTCTGTCAC
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
27 22 0.42
28 24 0.45
29 7 0.13
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:66742320 original size:29 final size:28
Alignment explanation
Indices: 66742230--66742320 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
66742220 CTGGTGGCTA
* * * *
66742230 TGCCACAAATTATCTGTTCTAGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
* *
66742258 TGCCAC-ATATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
66742285 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
66742314 TGTCACA
1 TGCCACA
66742321 TTTTCTGTAT
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
27 23 0.43
28 15 0.28
29 15 0.28
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:66742328 original size:55 final size:56
Alignment explanation
Indices: 66742220--66742334 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
66742210 AGGAAGCGTC
* *
66742220 CTGGTGGCTATGCCACAAATTATCTGTTCTAGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTAGTGACCCTGCCACATATATCTGTAT
* * * *
66742275 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTAGTGACCCTGCCACATATATCTGTAT
66742331 CTGG
1 CTGG
66742335 CAGCCATGTT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.59
56 20 0.39
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTAGTGACCCTGCCACATATATCTGTAT
Found at i:66747194 original size:46 final size:46
Alignment explanation
Indices: 66747088--66747257 Score: 152
Period size: 46 Copynumber: 3.7 Consensus size: 46
66747078 GCCACATTAT
* * *
66747088 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCGTCAGCATTGAGAC
1 GAGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCGGCAGCATCGAGAC
* *
66747136 GAGTGCTAGTGTAAGACATGTCTGGGACATGCGGC-GACCTCGAGAC
1 GAGAGCTAGTGTAAGACATGTCTGGGACATGCGGCAG-CATCGAGAC
* ** *
66747182 GTA-AGCTAGTGTAAGACATGTCTGAGACATGCATCAGC-TACGAGAT
1 G-AGAGCTAGTGTAAGACATGTCTGGGACATGCGGCAGCAT-CGAGAC
* *
66747228 GTG-TC-AGTGTAAGACCATGTCTGGGACATG
1 GAGAGCTAGTGTAAGA-CATGTCTGGGACATG
66747258 GCACCCGCAC
Statistics
Matches: 103, Mismatches: 13, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
44 9 0.09
45 17 0.17
46 47 0.46
47 16 0.16
48 14 0.14
ACGTcount: A:0.27, C:0.19, G:0.32, T:0.22
Consensus pattern (46 bp):
GAGAGCTAGTGTAAGACATGTCTGGGACATGCGGCAGCATCGAGAC
Found at i:66749302 original size:47 final size:47
Alignment explanation
Indices: 66749211--66749336 Score: 153
Period size: 47 Copynumber: 2.7 Consensus size: 47
66749201 GAATAATACA
* * * ** *
66749211 TTGATTTGGATACGAGCCATGGTATAGGTATTTTGAGAGGAGTTACC
1 TTGATTTGGCTACGGGCCATGGTATAGGTACTACGAGAGAAGTTACC
* *
66749258 TTGATTTGGCTACGGGCCATGGTATAGGTACTACGGGATAAGTTACC
1 TTGATTTGGCTACGGGCCATGGTATAGGTACTACGAGAGAAGTTACC
* * *
66749305 TTGATTTGGCTACGGTCCTTGCTATAGGTACT
1 TTGATTTGGCTACGGGCCATGGTATAGGTACT
66749337 TATCGATTAT
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.22, C:0.15, G:0.29, T:0.34
Consensus pattern (47 bp):
TTGATTTGGCTACGGGCCATGGTATAGGTACTACGAGAGAAGTTACC
Found at i:66751934 original size:29 final size:29
Alignment explanation
Indices: 66751902--66751957 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 29
66751892 GCGAGATATA
*
66751902 CTGA-TTTAGCTTTGGGCCATGCATATTGG
1 CTGATTTTAGCTTCGGGCCATG-ATATTGG
*
66751931 CTGATTTTGGCTTCGGGCCATGATATT
1 CTGATTTTAGCTTCGGGCCATGATATT
66751958 AGAACTTTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 9 0.38
30 15 0.62
ACGTcount: A:0.16, C:0.18, G:0.27, T:0.39
Consensus pattern (29 bp):
CTGATTTTAGCTTCGGGCCATGATATTGG
Found at i:66760144 original size:38 final size:39
Alignment explanation
Indices: 66760033--66760157 Score: 198
Period size: 39 Copynumber: 3.2 Consensus size: 39
66760023 GACTTAATGT
66760033 CTAGCAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
1 CTAGCAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
*
66760072 CTAGCAGGCCTCGTGCCAGTGATAAATTCAGGTTTATAC
1 CTAGCAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
* * **
66760111 CTAGCA-GCCTCGTGCCGGTGTTAAGTTTGGGTTTATAC
1 CTAGCAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
66760149 CTAGCAGGC
1 CTAGCAGGC
66760158 AAATTGCAGG
Statistics
Matches: 79, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
38 33 0.42
39 46 0.58
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.29
Consensus pattern (39 bp):
CTAGCAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
Found at i:66762668 original size:35 final size:34
Alignment explanation
Indices: 66762628--66762718 Score: 114
Period size: 35 Copynumber: 2.6 Consensus size: 34
66762618 TAGCACAGTG
66762628 GCATGCTTAACATGTGAATCAAAATCAGAA-ACATTA
1 GCATGCTTAACATG-GAATCAAAATCAGAATA-A-TA
*
66762664 -CATGCTTAACATAGGAGTCAAAATCAGAATAATA
1 GCATGCTTAACAT-GGAATCAAAATCAGAATAATA
66762698 GCATGCTTAACATGGGAATCA
1 GCATGCTTAACAT-GGAATCA
66762719 GAATAATAGA
Statistics
Matches: 49, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
34 2 0.04
35 45 0.92
36 2 0.04
ACGTcount: A:0.43, C:0.16, G:0.16, T:0.24
Consensus pattern (34 bp):
GCATGCTTAACATGGAATCAAAATCAGAATAATA
Found at i:66768318 original size:46 final size:43
Alignment explanation
Indices: 66768226--66768351 Score: 135
Period size: 46 Copynumber: 2.8 Consensus size: 43
66768216 TGATATGTGT
* *
66768226 GCTACTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGG---CATTACGAGA
*
66768272 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCATTGAGGCGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATT-A--CGAGA
* * * *
66768318 GCCAGTGTGAGACATGCCTGGGAAATGCATCGGC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGC
66768352 CTCGAGATAT
Statistics
Matches: 69, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
43 4 0.06
44 1 0.01
46 64 0.93
ACGTcount: A:0.26, C:0.20, G:0.32, T:0.22
Consensus pattern (43 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTACGAGA
Found at i:66771160 original size:41 final size:44
Alignment explanation
Indices: 66771069--66771167 Score: 123
Period size: 44 Copynumber: 2.3 Consensus size: 44
66771059 AAATGATTAG
**
66771069 CGAAGCTATAACGATATTGCACACTTAGTGCCATCACATTAAAC
1 CGAAGCTATCTCGATATTGCACACTTAGTGCCATCACATTAAAC
* * * *
66771113 TGAAGCTATCTCGGTATTGCACACTTAGTGCCA-CATA-T-AGC
1 CGAAGCTATCTCGATATTGCACACTTAGTGCCATCACATTAAAC
66771154 CGAAGCTATCTCGA
1 CGAAGCTATCTCGA
66771168 AACGTACACT
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
41 14 0.30
42 1 0.02
43 3 0.06
44 29 0.62
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.26
Consensus pattern (44 bp):
CGAAGCTATCTCGATATTGCACACTTAGTGCCATCACATTAAAC
Found at i:66780013 original size:13 final size:13
Alignment explanation
Indices: 66779995--66780023 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
66779985 TTTAGTTTAA
66779995 TTAGTTAATTAGT
1 TTAGTTAATTAGT
66780008 TTAGTTAATTAGT
1 TTAGTTAATTAGT
66780021 TTA
1 TTA
66780024 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:66785478 original size:6 final size:6
Alignment explanation
Indices: 66785467--66785499 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
66785457 TCCTCCTATC
*
66785467 TTTTTA TTTTTA TTTTTA TTTTTA TTTTCA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTT
66785500 CAATTTTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTTA
Found at i:66785505 original size:18 final size:18
Alignment explanation
Indices: 66785467--66785506 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
66785457 TCCTCCTATC
* **
66785467 TTTTTATTTTTATTTTTA
1 TTTTTATTTTCATTTCAA
66785485 TTTTTATTTTCATTTCAA
1 TTTTTATTTTCATTTCAA
66785503 TTTT
1 TTTT
66785507 ATTATTTTCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (18 bp):
TTTTTATTTTCATTTCAA
Found at i:66790461 original size:13 final size:13
Alignment explanation
Indices: 66790439--66790471 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
66790429 AAGGATTTGT
66790439 TTAT-TAAACTAA
1 TTATCTAAACTAA
66790451 TTATCTAAACTAA
1 TTATCTAAACTAA
*
66790464 TTAACTAA
1 TTATCTAA
66790472 TGTGATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:66807356 original size:40 final size:40
Alignment explanation
Indices: 66807299--66807377 Score: 131
Period size: 40 Copynumber: 2.0 Consensus size: 40
66807289 AAAAGCTCTG
* *
66807299 TTAACAGAAGCTTTGGTGTTGGTACAACCTGAGTTGGGTT
1 TTAACAGAAGCTCTGGTGTTGGTACAACCTGAGTCGGGTT
*
66807339 TTAACAGAAGCTCTGGTGTTGGTAGAACCTGAGTCGGGT
1 TTAACAGAAGCTCTGGTGTTGGTACAACCTGAGTCGGGT
66807378 AAAGAATTCA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.23, C:0.14, G:0.32, T:0.32
Consensus pattern (40 bp):
TTAACAGAAGCTCTGGTGTTGGTACAACCTGAGTCGGGTT
Found at i:66810453 original size:29 final size:29
Alignment explanation
Indices: 66810411--66810470 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
66810401 ATCGGAAGTT
66810411 TTGGCACTAAGTGTGCGATTTAAACTAGC
1 TTGGCACTAAGTGTGCGATTTAAACTAGC
66810440 TTGGCACTAAGTGTGCGATTTAAACTAGC
1 TTGGCACTAAGTGTGCGATTTAAACTAGC
66810469 TT
1 TT
66810471 CGGCTATTTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (29 bp):
TTGGCACTAAGTGTGCGATTTAAACTAGC
Found at i:66819282 original size:48 final size:48
Alignment explanation
Indices: 66819132--66819403 Score: 272
Period size: 48 Copynumber: 5.7 Consensus size: 48
66819122 TGATATGTGT
* * *
66819132 GCTAGTGTAAGACCATGTCTTGG-CATGGTATCGGCTACGATA-TGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCT-CGAGACTGAGA
* * * * * *
66819179 GCCAGTGTTAGACCATGTTTGGAACATGGCATC-GAT-GATGTTA-TGAGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTCGA-G--ACTGAGA
* * *
66819227 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACT-AGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TCGAGACTGAGA
*
66819275 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CGCGACATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTCGAGAC-TGAGA
* *
66819323 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGACA-TGTGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CTCGAGACTGAGA
* *
66819371 GCCAGTGTAAGACCATGTTTGGGACATGGCATC
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC
66819404 AGCAAATTAA
Statistics
Matches: 189, Mismatches: 24, Indels: 23
0.80 0.10 0.10
Matches are distributed among these distances:
45 2 0.01
46 4 0.02
47 21 0.11
48 153 0.81
49 2 0.01
50 5 0.03
51 2 0.01
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTCGAGACTGAGA
Found at i:66819302 original size:96 final size:95
Alignment explanation
Indices: 66819123--66819403 Score: 325
Period size: 96 Copynumber: 2.9 Consensus size: 95
66819113 ACATTTGGGT
* * * *
66819123 GATATGTGTGCTAGTGTAAGACCATGTCTTGG-CATGGTATCGGCTACGATATGAGAGCCAGTGT
1 GATATGAGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCT-CGACATGAGAGCCAGTGT
* * * *
66819187 TAGACCATGTTTGGAACATGGCATC-GATGAT
65 AAGACCATGTTTGGGACATGGCATCGGACG-C
* * * * * *
66819218 GTTATGAGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACT-AGAGCTAGTG
1 GATATGAGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TCGACA-TGAGAGCCAGTG
* *
66819282 TAAGACCATGTCTGGGACATGGCATCGGCCGC
64 TAAGACCATGTTTGGGACATGGCATCGGACGC
* * *
66819314 GACATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGACATGTGAGCCAGTGT
1 GATATGAGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CTCGACATGAGAGCCAGTGT
66819379 AAGACCATGTTTGGGACATGGCATC
65 AAGACCATGTTTGGGACATGGCATC
66819404 AGCAAATTAA
Statistics
Matches: 155, Mismatches: 25, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
95 29 0.19
96 121 0.78
97 5 0.03
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (95 bp):
GATATGAGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTCGACATGAGAGCCAGTGTA
AGACCATGTTTGGGACATGGCATCGGACGC
Found at i:66833594 original size:46 final size:46
Alignment explanation
Indices: 66833527--66833652 Score: 182
Period size: 46 Copynumber: 2.7 Consensus size: 46
66833517 AACCCGCCCC
* ***
66833527 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCAG-ATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATT-AGTATCCA
*
66833573 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGTATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTAGTATCCA
*
66833619 TAGGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
66833653 TGCTCAACCA
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
45 1 0.01
46 72 0.99
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTAGTATCCA
Found at i:66834108 original size:30 final size:30
Alignment explanation
Indices: 66834074--66834133 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
66834064 ATTTAATACG
66834074 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
66834104 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
66834134 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:66840832 original size:46 final size:46
Alignment explanation
Indices: 66840765--66840890 Score: 189
Period size: 46 Copynumber: 2.7 Consensus size: 46
66840755 AACCCACCCC
* ***
66840765 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
66840811 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGTATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
66840857 TAGGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
66840891 TGCTCAACCA
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 73 1.00
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:66845700 original size:55 final size:55
Alignment explanation
Indices: 66845607--66845728 Score: 138
Period size: 55 Copynumber: 2.2 Consensus size: 55
66845597 CTGCCAAAAT
* * * *
66845607 AACACGGGCGTGCGACATGCCCGTGCCTTGAAATCGTGGCCAAACCTGTCTA-ATC
1 AACACGGGCGTGAGACACGCCCGTGCCTAGAAACCGTGGCCAAACCTG-CTAGATC
* * * * *
66845662 AACACGGGCGTGAGACACGCCCGTGTCTAGCACCCGTGGTCAAACCTGCTAGATT
1 AACACGGGCGTGAGACACGCCCGTGCCTAGAAACCGTGGCCAAACCTGCTAGATC
*
66845717 AACACGGACGTG
1 AACACGGGCGTG
66845729 GGTCTACATA
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
54 3 0.05
55 53 0.95
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (55 bp):
AACACGGGCGTGAGACACGCCCGTGCCTAGAAACCGTGGCCAAACCTGCTAGATC
Found at i:66851339 original size:46 final size:46
Alignment explanation
Indices: 66851289--66851464 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
66851279 TGGTTGAGCA
66851289 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
66851335 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
66851380 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
66851428 -CCTGAGCTCGTTGAGTCGAGTCTGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
66851465 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 59 0.54
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:66851449 original size:93 final size:93
Alignment explanation
Indices: 66851286--66851457 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
66851276 GGATGGTTGA
*
66851286 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
*
66851351 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 CGAGTCCGAGTTCGTGAGATGTAACTAG
*
66851379 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
*
66851443 TCGAGTCTGAGTTCG
65 TCGAGTCCGAGTTCG
66851458 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
CGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:66858917 original size:46 final size:46
Alignment explanation
Indices: 66858867--66859042 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 46
66858857 TGGTTGAGCA
* *
66858867 TCCGAACTCGTTGAGTTGAGTCCGATTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * ** *
66858913 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATATAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
66858960 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
66859006 CCCGAGA-TCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGA-ACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
66859043 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 18, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
43 5 0.05
45 3 0.03
46 60 0.58
47 29 0.28
48 3 0.03
50 4 0.04
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:66859023 original size:93 final size:93
Alignment explanation
Indices: 66858864--66859035 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
66858854 GGATGGTTGA
* * * *
66858864 GCATCCGAACTCGTTGAGTTGAGTCCGATTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
66858929 TGAGTCCGAGTTCGTGAGATATAACTAG
66 TGAGTCCGAGTTCGTGAGATATAACTAG
* *
66858957 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGA-TCATTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGA-ACTCATTGAG
66859021 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
66859036 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
93 71 0.99
94 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATATAACTAG
Found at i:66863392 original size:13 final size:13
Alignment explanation
Indices: 66863374--66863400 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
66863364 ACCATCAGCA
66863374 CCGTGATTCCAGG
1 CCGTGATTCCAGG
66863387 CCGTGATTCCAGG
1 CCGTGATTCCAGG
66863400 C
1 C
66863401 TTCGAATCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.30, T:0.22
Consensus pattern (13 bp):
CCGTGATTCCAGG
Found at i:66864379 original size:18 final size:18
Alignment explanation
Indices: 66864358--66864432 Score: 57
Period size: 18 Copynumber: 4.1 Consensus size: 18
66864348 ACTATATGTT
66864358 TATTTTTATTATTATATA
1 TATTTTTATTATTATATA
*
66864376 TATTTTTATATATTGT-TA
1 TATTTTTAT-TATTATATA
* *
66864394 -ATTTTTTTTATTTTTATA
1 TATTTTTATTA-TTATATA
66864412 CCTTATTTTTA-TATTATATA
1 ---TATTTTTATTATTATATA
66864432 T
1 T
66864433 TATAAAATTA
Statistics
Matches: 45, Mismatches: 5, Indels: 15
0.69 0.08 0.23
Matches are distributed among these distances:
16 2 0.04
17 11 0.24
18 13 0.29
19 5 0.11
20 6 0.13
21 2 0.04
22 6 0.13
ACGTcount: A:0.28, C:0.03, G:0.01, T:0.68
Consensus pattern (18 bp):
TATTTTTATTATTATATA
Found at i:66864451 original size:16 final size:16
Alignment explanation
Indices: 66864423--66864467 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
66864413 CTTATTTTTA
66864423 TATTATATATTATAAAAT
1 TATT-TATATTAT-AAAT
*
66864441 TATTT-TATTATATAT
1 TATTTATATTATAAAT
66864456 TATTTATATTAT
1 TATTTATATTAT
66864468 TATTTATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
15 8 0.32
16 12 0.48
17 1 0.04
18 4 0.16
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (16 bp):
TATTTATATTATAAAT
Found at i:66864474 original size:23 final size:23
Alignment explanation
Indices: 66864415--66864474 Score: 68
Period size: 23 Copynumber: 2.6 Consensus size: 23
66864405 TTTTATACCT
*
66864415 TATTTTTATATTATATATTATAA
1 TATTATTATATTATATATTATAA
* * *
66864438 AATTATTTTATTATATATTATTTA
1 TATTATTATATTATATATTA-TAA
66864462 TATTATTAT-TTAT
1 TATTATTATATTAT
66864475 TATGTTTTAT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
23 21 0.70
24 9 0.30
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (23 bp):
TATTATTATATTATATATTATAA
Found at i:66864543 original size:20 final size:18
Alignment explanation
Indices: 66864519--66864575 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 18
66864509 TTACATTATC
66864519 ATTTTTACATTATTATTAT
1 ATTTTTACATTATTA-TAT
*
66864538 ATTTTTACTTGTATTATAT
1 ATTTTTACAT-TATTATAT
66864557 ATTTATTA-ATTATT-TAT
1 ATTT-TTACATTATTATAT
66864574 AT
1 AT
66864576 ACATTATTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
17 5 0.15
18 4 0.12
19 17 0.50
20 8 0.24
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.63
Consensus pattern (18 bp):
ATTTTTACATTATTATAT
Found at i:66864552 original size:17 final size:19
Alignment explanation
Indices: 66864513--66864561 Score: 57
Period size: 17 Copynumber: 2.6 Consensus size: 19
66864503 ATTATTTTAC
*
66864513 ATTATCATTTTTACATTATT
1 ATTAT-ATTTTTACATTAGT
66864533 ATTATATTTTTAC-TT-GT
1 ATTATATTTTTACATTAGT
*
66864550 ATTATATATTTA
1 ATTATATTTTTA
66864562 TTAATTATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 12 0.44
18 2 0.07
19 8 0.30
20 5 0.19
ACGTcount: A:0.31, C:0.06, G:0.02, T:0.61
Consensus pattern (19 bp):
ATTATATTTTTACATTAGT
Found at i:66864700 original size:17 final size:19
Alignment explanation
Indices: 66864679--66864797 Score: 63
Period size: 19 Copynumber: 6.3 Consensus size: 19
66864669 ATTATATAAC
66864679 ATTTATTATATT-TTTATT
1 ATTTATTATATTATTTATT
66864697 -TTTATTCTATATTATTTATT
1 ATTTA-T-TATATTATTTATT
* *
66864717 ATTTTTTATAGGTTATATA-T
1 ATTTATTATA--TTATTTATT
* *
66864737 A-TCA-TATATTATCTATT
1 ATTTATTATATTATTTATT
*
66864754 ATATTATT-TACGTT-TATATT
1 AT-TTATTATA--TTATTTATT
* *
66864774 ATTCATTATATTATTTATA
1 ATTTATTATATTATTTATT
66864793 ATTTA
1 ATTTA
66864798 AAAATTTGTA
Statistics
Matches: 76, Mismatches: 11, Indels: 27
0.67 0.10 0.24
Matches are distributed among these distances:
16 6 0.08
17 6 0.08
18 7 0.09
19 27 0.36
20 19 0.25
21 11 0.14
ACGTcount: A:0.31, C:0.04, G:0.03, T:0.62
Consensus pattern (19 bp):
ATTTATTATATTATTTATT
Found at i:66864701 original size:31 final size:30
Alignment explanation
Indices: 66864665--66864725 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 30
66864655 TTAAAATATA
66864665 TTTTATTATATAACATTTATTATATTTTTAT
1 TTTTATTATATAACATTTATTAT-TTTTTAT
* **
66864696 TTTTATTCTATATTATTTATTATTTTTTAT
1 TTTTATTATATAACATTTATTATTTTTTAT
66864726 AGGTTATATA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 7 0.26
31 20 0.74
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (30 bp):
TTTTATTATATAACATTTATTATTTTTTAT
Found at i:66871324 original size:11 final size:10
Alignment explanation
Indices: 66871304--66871360 Score: 53
Period size: 10 Copynumber: 5.4 Consensus size: 10
66871294 CTTCTATTTC
66871304 AAAAAAAAAG
1 AAAAAAAAAG
66871314 AAAAGAAAAAG
1 AAAA-AAAAAG
*
66871325 AAAAAAAAAT
1 AAAAAAAAAG
66871335 AATAATAATAAAG
1 AA-AA-AA-AAAG
*
66871348 -AGAAAAAAG
1 AAAAAAAAAG
66871357 AAAA
1 AAAA
66871361 TGGAGAGGCC
Statistics
Matches: 38, Mismatches: 4, Indels: 10
0.73 0.08 0.19
Matches are distributed among these distances:
9 4 0.11
10 15 0.39
11 13 0.34
12 3 0.08
13 3 0.08
ACGTcount: A:0.82, C:0.00, G:0.11, T:0.07
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:66871347 original size:23 final size:21
Alignment explanation
Indices: 66871304--66871360 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
66871294 CTTCTATTTC
66871304 AAAAAAAAAGAAAAGAAAAAG
1 AAAAAAAAAGAAAAGAAAAAG
* *
66871325 AAAAAAAAATAATAATAATAAAG
1 AAAAAAAAAGAA-AAGAA-AAAG
*
66871348 -AGAAAAAAGAAAA
1 AAAAAAAAAGAAAA
66871361 TGGAGAGGCC
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
21 13 0.43
22 13 0.43
23 4 0.13
ACGTcount: A:0.82, C:0.00, G:0.11, T:0.07
Consensus pattern (21 bp):
AAAAAAAAAGAAAAGAAAAAG
Found at i:66872287 original size:44 final size:44
Alignment explanation
Indices: 66872250--66872706 Score: 378
Period size: 44 Copynumber: 10.4 Consensus size: 44
66872240 CAAAGAAACA
*
66872250 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCAAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* * * * * * * ***
66872294 AGATCTGACATTCCTGTGCTTACAGGAAAGCAGATCAAAGATTTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAA-CAGATCGAAGATAGC
* *
66872339 AGCA--TGGCATCCCTATGTTTATAGGGAACA-AGTTGAAGATAGC
1 AG-ATTTGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
66872382 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* * * * * * **
66872426 AGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTC
1 AGATTTGGCATCCCTGTGTTTATAGGGAA-CAGATCGAAGATAGC
* * *
66872471 AGCA--TGGCATCCCTATGTTTATAGGGAACA-AGTTGAAGATAGA
1 AG-ATTTGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
* * *
66872514 AGATTTGGCATCCATGTGTTTATAGGAAACA-AGTTGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
* *
66872558 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAAATAAC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* * * * * * **
66872602 AGATCTGACA-CTCCTGTGCTTACAGCGAAGCAGATCGAGGATTTC
1 AGATTTGGCATC-CCTGTGTTTATAGGGAA-CAGATCGAAGATAGC
* *
66872647 AGCA--TGGTATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGC
1 AG-ATTTGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
*
66872690 AGATTTGGCATCTCTGT
1 AGATTTGGCATCCCTGT
66872707 ATTGGCGGAG
Statistics
Matches: 325, Mismatches: 69, Indels: 38
0.75 0.16 0.09
Matches are distributed among these distances:
42 6 0.02
43 33 0.10
44 238 0.73
45 45 0.14
46 3 0.01
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.28
Consensus pattern (44 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
Found at i:66872487 original size:132 final size:131
Alignment explanation
Indices: 66872249--66872595 Score: 536
Period size: 132 Copynumber: 2.6 Consensus size: 131
66872239 TCAAAGAAAC
*
66872249 AAGATTTGGCATCCCTGTGTTTATAGGGAACAGATCAAAGATAGCAGATCTGACATTCCTGTGCT
1 AAGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCT
* *
66872314 TACAGGAAAGCAGATCAAAGATTTTAGCATGGCATCCCTATGTTTATAGGGAACAAGTTGAAGAT
66 TACAGG-AAGCAGATCGAAGATTTCAGCATGGCATCCCTATGTTTATAGGGAACAAGTTGAAGAT
66872379 AG
130 AG
*
66872381 CAGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCT
1 AAGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCT
66872446 TACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTATGTTTATAGGGAACAAGTTGAAGAT
66 TACAG-GAAGCAGATCGAAGATTTCAGCATGGCATCCCTATGTTTATAGGGAACAAGTTGAAGAT
66872511 AG
130 AG
* * * * * * *
66872513 AAGATTTGGCATCCATGTGTTTATAGGAAACA-AGTTGAAGATAGCAGATTTGGCATCCCTGTGT
1 AAGATTTGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGCAGATCTGACATTCCTGTGC
*
66872577 TTATAGGGAA-CAGATCGAA
65 TTACA-GGAAGCAGATCGAA
66872596 AATAACAGAT
Statistics
Matches: 199, Mismatches: 13, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
131 10 0.05
132 187 0.94
133 2 0.01
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (131 bp):
AAGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCT
TACAGGAAGCAGATCGAAGATTTCAGCATGGCATCCCTATGTTTATAGGGAACAAGTTGAAGATA
G
Found at i:66872637 original size:176 final size:176
Alignment explanation
Indices: 66872343--66872701 Score: 619
Period size: 176 Copynumber: 2.0 Consensus size: 176
66872333 GATTTTAGCA
* *
66872343 TGGCATCCCTATGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGG
1 TGGCATCCATATGTTTATAGGAAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGG
* * * *
66872408 GAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAG
66 GAACAGATCGAAAATAACAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTCAG
66872473 CATGGCATCCCTATGTTTATAGGGAACAAGTTGAAGATAGAAGATT
131 CATGGCATCCCTATGTTTATAGGGAACAAGTTGAAGATAGAAGATT
*
66872519 TGGCATCCATGTGTTTATAGGAAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGG
1 TGGCATCCATATGTTTATAGGAAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGG
*
66872584 GAACAGATCGAAAATAACAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAGGATTTCAG
66 GAACAGATCGAAAATAACAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTCAG
* * *
66872649 CATGGTATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATT
131 CATGGCATCCCTATGTTTATAGGGAACAAGTTGAAGATAGAAGATT
66872695 TGGCATC
1 TGGCATC
66872702 TCTGTATTGG
Statistics
Matches: 172, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
176 172 1.00
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (176 bp):
TGGCATCCATATGTTTATAGGAAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGG
GAACAGATCGAAAATAACAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTCAG
CATGGCATCCCTATGTTTATAGGGAACAAGTTGAAGATAGAAGATT
Found at i:66873059 original size:205 final size:205
Alignment explanation
Indices: 66872722--66873207 Score: 710
Period size: 205 Copynumber: 2.4 Consensus size: 205
66872712 CGGAGAGTAG
*
66872722 ATCGAAGACATAGCTGATTTGGCTTTCACATGTTTACGTTGAAGCAAATCTAAGATGATTTGGCA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCA
* * * *
66872787 TCTCTGTATTGTCAGAGAACAAATCAAAGTCTGGCATCTCCACTTCGACGGAGGGCAGACTCATA
66 TCTCTGTATTGTCAAAGAACAAATCAAAGTATGGCATCTCCACTTCAACGGAGAGCAGACTCATA
* * * * * **
66872852 GCAGATC-CAAACTTCAGAT-GTCTATACTGAAGTAGATCCAAGATGGTTTGGCATCCTTGTGCT
131 GCAGATCTC-AACTTCAGATGGT-TATACTAAAGCAGATCCAACACGATTTAACATCCTTGTGCT
66872915 TACAAGGAGCAA
194 TACAAGGAGCAA
* *
66872927 ATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTCGAAGCAAATCTAAGATGATTTGGCA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCA
* * *
66872992 TCTCTGTATTGTCAAAGAGCAAATCAAAGTATGGCATCTCCACTTCAATGTG-GAGTAGA-TACA
66 TCTCTGTATTGTCAAAGAACAAATCAAAGTATGGCATCTCCACTTCAACG-GAGAGCAGACT-CA
* *
66873055 TAGCAGATCTCACCTTCAGGTGGTTATACTAAAGCAGATCCAACACGATTTAACATCCTTGTGCT
129 TAGCAGATCTCAACTTCAGATGGTTATACTAAAGCAGATCCAACACGATTTAACATCCTTGTGCT
66873120 TACAAGGAGCAA
194 TACAAGGAGCAA
* * *
66873132 ATCGAAGACACAGCTGATTTGGCTTTCATGTGTTTACGTTAAAGCAAATCTAAGATGATTTGGCA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCA
66873197 TCTCTGTATTG
66 TCTCTGTATTG
66873208 GCAGGGAGCA
Statistics
Matches: 253, Mismatches: 24, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
204 1 0.00
205 248 0.98
206 4 0.02
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (205 bp):
ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCA
TCTCTGTATTGTCAAAGAACAAATCAAAGTATGGCATCTCCACTTCAACGGAGAGCAGACTCATA
GCAGATCTCAACTTCAGATGGTTATACTAAAGCAGATCCAACACGATTTAACATCCTTGTGCTTA
CAAGGAGCAA
Found at i:66873234 original size:87 final size:87
Alignment explanation
Indices: 66873125--66873287 Score: 263
Period size: 87 Copynumber: 1.9 Consensus size: 87
66873115 GTGCTTACAA
* *
66873125 GGAGCAAATCGAAGACACAGCTGATTTGGCTTTCATGTGTTTACGTTAAAGCAAATCTAAGATGA
1 GGAGCAAATCGAAGACACAGCTGATTGGGCTTTCACGTGTTTACGTTAAAGCAAATCTAAGATGA
66873190 TTTGGCATCTCTGTATTGGCAG
66 TTTGGCATCTCTGTATTGGCAG
* * * * *
66873212 GGAGCAGATCGAAGACATAGCTGATTGGGCTTTTACGTGTTTATGTTGAAGCAAATCTAAGATGA
1 GGAGCAAATCGAAGACACAGCTGATTGGGCTTTCACGTGTTTACGTTAAAGCAAATCTAAGATGA
66873277 TTTGGCATCTC
66 TTTGGCATCTC
66873288 CGGGTTTGAC
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
87 69 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.31
Consensus pattern (87 bp):
GGAGCAAATCGAAGACACAGCTGATTGGGCTTTCACGTGTTTACGTTAAAGCAAATCTAAGATGA
TTTGGCATCTCTGTATTGGCAG
Found at i:66874954 original size:11 final size:11
Alignment explanation
Indices: 66874940--66874965 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
66874930 AATTATTTTA
66874940 TTATATATTAT
1 TTATATATTAT
66874951 TTATATATTAT
1 TTATATATTAT
66874962 TTAT
1 TTAT
66874966 TATGTTTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
TTATATATTAT
Found at i:66875020 original size:79 final size:76
Alignment explanation
Indices: 66874850--66875032 Score: 174
Period size: 79 Copynumber: 2.3 Consensus size: 76
66874840 CCTATATGTT
* ** *
66874850 TATTTTTATTATTA-TATATATTTTTTATATATTGTTAATTGTTTTATTTTTATACCTTATTTTT
1 TATTTTTA-TATTATTATATA-TTTTTATATATTGTTAATTGTTTTATTTTTACAAATTATTATT
*
66874914 ATATTATATATTA
64 ATATTATACATTA
*** * * *
66874927 TAAAATTATTTTATTATATATTATTTATATATTATTTATTATGTTTTATTTTTCACAAATTATTA
1 TATTTTTATATTATTATATATT-TTTATATATT-GTTAAT-TGTTTTATTTTT-ACAAATTATTA
66874992 TTAT-TT-TACATTA
62 TTATATTATACATTA
66875005 TCATTTTTATATTATTATTATATTTTTA
1 T-ATTTTTATATTATTA-TATATTTTTA
66875033 CTTGTATTAT
Statistics
Matches: 84, Mismatches: 15, Indels: 12
0.76 0.14 0.11
Matches are distributed among these distances:
76 6 0.07
77 21 0.25
78 11 0.13
79 29 0.35
80 17 0.20
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64
Consensus pattern (76 bp):
TATTTTTATATTATTATATATTTTTATATATTGTTAATTGTTTTATTTTTACAAATTATTATTAT
ATTATACATTA
Found at i:66876716 original size:23 final size:25
Alignment explanation
Indices: 66876665--66876720 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 25
66876655 AAGATAATGT
* *
66876665 TATAAAAACACAAAATAACTTACAT
1 TATAAAAACACAAAATAAATTACAA
*
66876690 TATAAAAATA-AAAATAAATTA-AA
1 TATAAAAACACAAAATAAATTACAA
66876713 TATAAAAA
1 TATAAAAA
66876721 ACATTTAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
23 9 0.32
24 10 0.36
25 9 0.32
ACGTcount: A:0.68, C:0.07, G:0.00, T:0.25
Consensus pattern (25 bp):
TATAAAAACACAAAATAAATTACAA
Found at i:66876728 original size:17 final size:18
Alignment explanation
Indices: 66876685--66876731 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
66876675 CAAAATAACT
66876685 TACATTATAAAAATAAAAA
1 TACATT-TAAAAATAAAAA
* *
66876704 TA-AATTAAATATAAAAA
1 TACATTTAAAAATAAAAA
66876721 -ACATTTAAAAA
1 TACATTTAAAAA
66876732 AATTCGATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 4
0.74 0.13 0.13
Matches are distributed among these distances:
16 1 0.04
17 18 0.78
18 2 0.09
19 2 0.09
ACGTcount: A:0.68, C:0.04, G:0.00, T:0.28
Consensus pattern (18 bp):
TACATTTAAAAATAAAAA
Found at i:66878283 original size:51 final size:49
Alignment explanation
Indices: 66878163--66878406 Score: 317
Period size: 51 Copynumber: 4.9 Consensus size: 49
66878153 TATTGTGAGG
* * * *
66878163 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTGA
* * * *
66878212 TCGCATGTGTAGTACTAAGTGCAAGCTACTATGCGTACCCGATAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA-TT-GA
* *
66878263 TCACGTGTGTAGTACTAAGTGCAGGCTACTAGGCGTACCCGATAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA-TT-GA
* *
66878314 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTGA
* * *
66878363 TCGCATGTGTAGTACTAAGTGCAGGCTACTATACGTACCAGATA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
66878407 GCTTTGGCTA
Statistics
Matches: 173, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
49 79 0.46
50 4 0.02
51 90 0.52
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (49 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTGA
Found at i:66878372 original size:100 final size:100
Alignment explanation
Indices: 66878163--66878406 Score: 312
Period size: 100 Copynumber: 2.4 Consensus size: 100
66878153 TATTGTGAGG
* * * * *
66878163 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCATGTGTAGTACT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGATCACATGTGTAGTACT
*
66878228 AAGTGCAAGCTACTATGCGTACCCGATAACTTCGA
66 AAGTGCAAGCTACTATGCGTACCAGATAACTTCGA
* * * *
66878263 TCACGTGTGTAGTACTAAGTGCAGGCTACTAGGCGTACCCGATAACTTCGATCACGTGTGTAGTA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-TT-GATCACATGTGTAGTA
* * *
66878328 CTAAGTGCAGGCTACTATGTGTACCAGATAA-TT-GG
64 CTAAGTGCAAGCTACTATGCGTACCAGATAACTTCGA
* **
66878363 TCGCATGTGTAGTACTAAGTGCAGGCTACTATACGTACCAGATA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
66878407 GCTTTGGCTA
Statistics
Matches: 126, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
100 81 0.64
101 4 0.03
102 41 0.33
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (100 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGATCACATGTGTAGTACT
AAGTGCAAGCTACTATGCGTACCAGATAACTTCGA
Found at i:66881559 original size:31 final size:31
Alignment explanation
Indices: 66881524--66881587 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
66881514 CCTTTTCATA
*
66881524 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
66881555 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
66881586 TT
1 TT
66881588 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:66881855 original size:23 final size:24
Alignment explanation
Indices: 66881781--66881969 Score: 215
Period size: 24 Copynumber: 8.0 Consensus size: 24
66881771 ACTTTATCAT
* *
66881781 ATAACTGGAGGCAT-TGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* * * *
66881806 ATAACTGTGG-AAAAGCCTTTTTT
1 ATAACTGGGGCATAAGCCCTTTTG
* * *
66881829 ATAACTAGGGCATAAGCCC-TCTA
1 ATAACTGGGGCATAAGCCCTTTTG
*
66881852 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
66881876 ATAATTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
66881900 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
* *
66881924 ATAACTAGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTG
66881947 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
66881970 TCCCTTCCTC
Statistics
Matches: 139, Mismatches: 21, Indels: 9
0.82 0.12 0.05
Matches are distributed among these distances:
23 53 0.38
24 79 0.57
25 7 0.05
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.31
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:66881873 original size:48 final size:47
Alignment explanation
Indices: 66881802--66881969 Score: 239
Period size: 47 Copynumber: 3.6 Consensus size: 47
66881792 CATTGCCTCT
* * * *
66881802 TTTAATAACTGTGG-AAAAGCCTTTTTTATAACTAGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTAGGGCATAAGCCC
* * * *
66881848 TCTAATAACTGGGGCGTAAGCCCTTTTGATAATTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTAGGGCATAAGCCC
*
66881895 TTTTGATAACTGGGGCATAAGCCCTTTTGATAACTAGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCCTTTTGATAACTAGGGCATAAGCCC
66881943 TTTAATAACTGGGGCATAAGCCCTTTT
1 TTTAATAACTGGGGCATAAGCCCTTTT
66881970 TCCCTTCCTC
Statistics
Matches: 106, Mismatches: 14, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
46 12 0.11
47 52 0.49
48 42 0.40
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTGATAACTAGGGCATAAGCCC
Found at i:66882044 original size:20 final size:20
Alignment explanation
Indices: 66882019--66882057 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
66882009 TATGAATACA
66882019 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATG
66882039 TCATGTGCATATCATACAT
1 TCATGTGCATATCATACAT
66882058 ACCATGTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATG
Found at i:66882063 original size:20 final size:20
Alignment explanation
Indices: 66882020--66882064 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
66882010 ATGAATACAT
**
66882020 CATGTGCATATCATACATGT
1 CATGTGCATATCATACATAC
66882040 CATGTGCATATCATACATAC
1 CATGTGCATATCATACATAC
66882060 CATGT
1 CATGT
66882065 TTATCAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.33
Consensus pattern (20 bp):
CATGTGCATATCATACATAC
Found at i:66882133 original size:25 final size:25
Alignment explanation
Indices: 66882101--66882148 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
66882091 ATACATAAAC
* *
66882101 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGTAAAAAGGTCATTTTTA
66882126 CCTAGGGGTAAAAAGGTCATTTT
1 CCTAGGGGTAAAAAGGTCATTTT
66882149 CATGTTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.27, C:0.12, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGTAAAAAGGTCATTTTTA
Found at i:66884527 original size:44 final size:44
Alignment explanation
Indices: 66884426--66884516 Score: 173
Period size: 44 Copynumber: 2.1 Consensus size: 44
66884416 CATTGATGCG
*
66884426 TACAACACATAAATCAACATAATCTCATATTGATATAGGAAGTT
1 TACAACACATAAATCAACATAATCTCATATTGAGATAGGAAGTT
66884470 TACAACACATAAATCAACATAATCTCATATTGAGATAGGAAGTT
1 TACAACACATAAATCAACATAATCTCATATTGAGATAGGAAGTT
66884514 TAC
1 TAC
66884517 TTATCATAAA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.45, C:0.16, G:0.10, T:0.29
Consensus pattern (44 bp):
TACAACACATAAATCAACATAATCTCATATTGAGATAGGAAGTT
Found at i:66893944 original size:10 final size:10
Alignment explanation
Indices: 66893929--66893972 Score: 52
Period size: 10 Copynumber: 4.1 Consensus size: 10
66893919 AGTAAGTTAA
66893929 AAAGATAAAT
1 AAAGATAAAT
66893939 AAAGATAAAAAT
1 AAAGAT--AAAT
*
66893951 AAAAATAAAT
1 AAAGATAAAT
66893961 AAAGGATAAAT
1 AAA-GATAAAT
66893972 A
1 A
66893973 GTAGGGGTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
10 13 0.45
11 7 0.24
12 9 0.31
ACGTcount: A:0.73, C:0.00, G:0.09, T:0.18
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:66899879 original size:19 final size:17
Alignment explanation
Indices: 66899848--66899890 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
66899838 TACCAGAAGT
*
66899848 AAATAAAAGA-AAATTTA
1 AAATAAAA-ACAAAATTA
66899865 ACAATAAAAACAAAATTA
1 A-AATAAAAACAAAATTA
66899883 AAATAAAA
1 AAATAAAA
66899891 TTTAACTTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 9 0.39
18 14 0.61
ACGTcount: A:0.74, C:0.05, G:0.02, T:0.19
Consensus pattern (17 bp):
AAATAAAAACAAAATTA
Found at i:66902739 original size:19 final size:19
Alignment explanation
Indices: 66902715--66902756 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
66902705 AACAATAGGT
66902715 GCATTTGCTAGTCCTAAAG
1 GCATTTGCTAGTCCTAAAG
*
66902734 GCATTTGTTAGTCCTAAAG
1 GCATTTGCTAGTCCTAAAG
66902753 GCAT
1 GCAT
66902757 AACAAGGAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.33
Consensus pattern (19 bp):
GCATTTGCTAGTCCTAAAG
Found at i:66904930 original size:43 final size:42
Alignment explanation
Indices: 66904880--66904978 Score: 119
Period size: 42 Copynumber: 2.3 Consensus size: 42
66904870 TCCCAGACGT
*
66904880 GGTCTTACATGTAATCAAATATCGATG-CTACTGTCCCAAACAG
1 GGTCTTACATGTAATCAAATA-CGATGTCGA-TGTCCCAAACAG
*** * *
66904923 GGTCTTACACAAAATCAAATACGATGTCGATGTCCCAGACAT
1 GGTCTTACATGTAATCAAATACGATGTCGATGTCCCAAACAG
66904965 GGTCTTACATGTAA
1 GGTCTTACATGTAA
66904979 ATCATAAGTC
Statistics
Matches: 46, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
42 26 0.57
43 20 0.43
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.27
Consensus pattern (42 bp):
GGTCTTACATGTAATCAAATACGATGTCGATGTCCCAAACAG
Found at i:66904981 original size:43 final size:44
Alignment explanation
Indices: 66904869--66904982 Score: 137
Period size: 43 Copynumber: 2.7 Consensus size: 44
66904859 CAATGCCAAC
* *
66904869 GTCCCAGACGTGGTCTTACATGT-AATCAAATATCGATGCTACT
1 GTCCCAGACATGGTCTTACATGTAAATCAAATATCGATGCGACT
* * **
66904912 GTCCCAAACAGGGTCTTACA-CAAAATCAAATA-CGATGTCGA-T
1 GTCCCAGACATGGTCTTACATGTAAATCAAATATCGATG-CGACT
66904954 GTCCCAGACATGGTCTTACATGTAAATCA
1 GTCCCAGACATGGTCTTACATGTAAATCA
66904983 TAAGTCGCCA
Statistics
Matches: 58, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
42 24 0.41
43 34 0.59
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (44 bp):
GTCCCAGACATGGTCTTACATGTAAATCAAATATCGATGCGACT
Found at i:66913637 original size:40 final size:40
Alignment explanation
Indices: 66913592--66913783 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 40
66913582 ATAACCACAA
* *
66913592 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* * *
66913632 GCACAAATGCCTTCGGGTCTTAGCCTGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* * * * *
66913672 GCACAAATGCCTTCGGGTCTTAGCTCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATAGCAACTC
* * ** * * * *
66913712 TCATAAATGCCTTCGGAACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATAGCAACTC
* * *
66913752 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAT
66913784 CATTCAAATG
Statistics
Matches: 134, Mismatches: 17, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
39 1 0.01
40 129 0.96
41 4 0.03
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
Found at i:66924640 original size:40 final size:40
Alignment explanation
Indices: 66924585--66924802 Score: 305
Period size: 40 Copynumber: 5.5 Consensus size: 40
66924575 CGGATGATAA
* * *
66924585 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
66924625 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
66924665 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
66924705 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
66924745 CCGGGCTATGTCCCGAAGGCATTCGAGCGAGTTGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
66924785 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
66924803 TACCTGGCTT
Statistics
Matches: 161, Mismatches: 16, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 14 0.09
40 147 0.91
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:66937045 original size:28 final size:27
Alignment explanation
Indices: 66936988--66937139 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
66936978 TAAATTGTGC
*
66936988 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
66937015 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
66937043 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
66937070 AGCACTAAGTGTGCGAGTCTGATTATGT
1 AGCACTAAGTGTGCGAGT-TGACTATGT
* *
66937098 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
66937125 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
66937140 GACTTAATAT
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:66937052 original size:55 final size:55
Alignment explanation
Indices: 66936988--66937139 Score: 250
Period size: 55 Copynumber: 2.8 Consensus size: 55
66936978 TAAATTGTGC
* *
66936988 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTCTGACTATGT
*
66937043 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTCTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTCTGACTATGT
* * *
66937098 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
66937140 GACTTAATAT
Statistics
Matches: 91, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
55 91 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTCTGACTATGT
Found at i:66938823 original size:28 final size:27
Alignment explanation
Indices: 66938783--66938835 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
66938773 CGAAAGTTTA
*
66938783 AACTAGGTTTTCCTTTACCTTTATCTCT
1 AACTAGCTTTTCC-TTACCTTTATCTCT
*
66938811 AACTAGCTTTTCCTTGCCTTTATCT
1 AACTAGCTTTTCCTTACCTTTATCT
66938836 ATACTCGTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 11 0.48
28 12 0.52
ACGTcount: A:0.17, C:0.26, G:0.08, T:0.49
Consensus pattern (27 bp):
AACTAGCTTTTCCTTACCTTTATCTCT
Found at i:66951477 original size:12 final size:12
Alignment explanation
Indices: 66951460--66951489 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
66951450 AAATTTTGTG
66951460 ATTTATATATGC
1 ATTTATATATGC
66951472 ATTTATATATGC
1 ATTTATATATGC
66951484 ATTTAT
1 ATTTAT
66951490 TTTTTATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.53
Consensus pattern (12 bp):
ATTTATATATGC
Found at i:66951559 original size:24 final size:25
Alignment explanation
Indices: 66951514--66951574 Score: 70
Period size: 24 Copynumber: 2.4 Consensus size: 25
66951504 TTTAGAGAAT
* *
66951514 TTTTATATTCTTTTTAAATTTATATA
1 TTTTATA-TATTTTTAAATTTAGATA
*
66951540 TTTTATATATTTTT-ATTTTAGATA
1 TTTTATATATTTTTAAATTTAGATA
*
66951564 ATTTATATATT
1 TTTTATATATT
66951575 ATAAAGAAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
24 18 0.58
25 6 0.19
26 7 0.23
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.66
Consensus pattern (25 bp):
TTTTATATATTTTTAAATTTAGATA
Found at i:66951659 original size:15 final size:17
Alignment explanation
Indices: 66951607--66951659 Score: 65
Period size: 18 Copynumber: 3.2 Consensus size: 17
66951597 ATATAATAAT
* *
66951607 TTTTATAATTATATATCT
1 TTTTATAATTTTATAT-A
66951625 TTTTATAATTTTATATA
1 TTTTATAATTTTATATA
66951642 TTTTA-AATTTTA-ATA
1 TTTTATAATTTTATATA
66951657 TTT
1 TTT
66951660 CTAATAGACG
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
15 6 0.18
16 7 0.21
17 5 0.15
18 15 0.45
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (17 bp):
TTTTATAATTTTATATA
Found at i:66952597 original size:29 final size:29
Alignment explanation
Indices: 66952563--66952621 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 29
66952553 ATAATTGTAT
66952563 TTTATTTAATAT-AAAAATAAATCTATATA
1 TTTATTTAA-ATCAAAAATAAATCTATATA
* *
66952592 TTTATTTAAATCAAAATTAAATTTATATA
1 TTTATTTAAATCAAAAATAAATCTATATA
66952621 T
1 T
66952622 ATTAAATTAC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
28 2 0.07
29 25 0.93
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.47
Consensus pattern (29 bp):
TTTATTTAAATCAAAAATAAATCTATATA
Found at i:66957466 original size:21 final size:22
Alignment explanation
Indices: 66957440--66957488 Score: 75
Period size: 21 Copynumber: 2.3 Consensus size: 22
66957430 TTGAATGTGC
*
66957440 AAATTTTTTATTTA-TTTTATA
1 AAATTTTTTATGTACTTTTATA
66957461 AAA-TTTTTATGTACTTTTATA
1 AAATTTTTTATGTACTTTTATA
66957482 AAATTTT
1 AAATTTT
66957489 GGAATCTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 9 0.36
21 13 0.52
22 3 0.12
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (22 bp):
AAATTTTTTATGTACTTTTATA
Found at i:66957895 original size:224 final size:223
Alignment explanation
Indices: 66957503--66957910 Score: 606
Period size: 224 Copynumber: 1.8 Consensus size: 223
66957493 TCTTTATAAA
66957503 AAATATTATTTTTTAAAGTTTTATTTTTTTTCAAATTTTCAGAATAATATCTAAATTGATAGAAT
1 AAATATTATTTTTTAAAGTTTTATTTTTTTT---ATTTTCAGAATAATATCTAAATTGATAGAAT
* * * ** *
66957568 GCGTAAATATTAGAAGATTAAATTTTTTATTTTGTCAATAAAAACATGACACATTAGCCTTCTAT
63 GCGTAAATATTAGAAAACTAAATTTGTTATTTTACCAATAAAAACATGACACATTAGCCTTCCAT
* *
66957633 TAACTATTTAATGATAGGTTACCTCCATCAATTGTATATCTGAACCCAAGTTGTTACCTATTGAT
128 TAACTATTCAATGATAGATTACCTCCATCAATTGTATATCTGAACCCAAGTTGTTACCTATTGAT
66957698 TGGGTGTTCATCTTTCCTAGGATTAGCTTGG
193 TGGGTGTTCATCTTTCCTAGGATTAGCTTGG
*
66957729 AAATATTATTTTTTAAAGTTTTATTTTTAAATTT-TTTTTAGAATAATAT-TAAATTGATAGAAT
1 AAATATTATTTTTTAAAGTTTTATTTTT---TTTATTTTCAGAATAATATCTAAATTGATAGAAT
* * *
66957792 GTGTAAATATTTA-AAAACTAAATTTGTTATTTTACCAATAAAAACATGTCACATTAGCCTTCCG
63 GCGTAAATA-TTAGAAAACTAAATTTGTTATTTTACCAATAAAAACATGACACATTAGCCTTCCA
* *
66957856 TTAACTATTCAATGATAGATTACCTCCATCAATTGTATATTTGAACTCAAGTTGT
127 TTAACTATTCAATGATAGATTACCTCCATCAATTGTATATCTGAACCCAAGTTGT
66957911 GGCCTATTTC
Statistics
Matches: 164, Mismatches: 14, Indels: 10
0.87 0.07 0.05
Matches are distributed among these distances:
224 116 0.71
225 17 0.10
226 28 0.17
229 3 0.02
ACGTcount: A:0.35, C:0.12, G:0.11, T:0.43
Consensus pattern (223 bp):
AAATATTATTTTTTAAAGTTTTATTTTTTTTATTTTCAGAATAATATCTAAATTGATAGAATGCG
TAAATATTAGAAAACTAAATTTGTTATTTTACCAATAAAAACATGACACATTAGCCTTCCATTAA
CTATTCAATGATAGATTACCTCCATCAATTGTATATCTGAACCCAAGTTGTTACCTATTGATTGG
GTGTTCATCTTTCCTAGGATTAGCTTGG
Found at i:66958240 original size:24 final size:25
Alignment explanation
Indices: 66958213--66958260 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
66958203 TCGAGTTTAT
* *
66958213 TTTTCTTAGTTAGACTCT-ACTATC
1 TTTTCGTAGTTAAACTCTAACTATC
66958237 TTTTCGTAGTTAAACTCTAACTAT
1 TTTTCGTAGTTAAACTCTAACTAT
66958261 TCTAGGAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 16 0.76
25 5 0.24
ACGTcount: A:0.25, C:0.19, G:0.08, T:0.48
Consensus pattern (25 bp):
TTTTCGTAGTTAAACTCTAACTATC
Found at i:66960989 original size:45 final size:46
Alignment explanation
Indices: 66960935--66961043 Score: 150
Period size: 47 Copynumber: 2.3 Consensus size: 46
66960925 TGCACACTTT
* *
66960935 TCACAATTGGTCATTCGGCCTTATCACATAT-TCACTTACACATAT-A
1 TCAC-ATTGGCCATTCGGCCTTATCACATATAACACTTACACAT-TCA
*
66960981 TCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATA-ACACTTACACATTCA
66961028 TCACATTGGCCATTCG
1 TCACATTGGCCATTCG
66961044 ATCTTAAGCT
Statistics
Matches: 57, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
45 25 0.44
46 5 0.09
47 27 0.47
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (46 bp):
TCACATTGGCCATTCGGCCTTATCACATATAACACTTACACATTCA
Found at i:66967124 original size:68 final size:68
Alignment explanation
Indices: 66967011--66967263 Score: 319
Period size: 68 Copynumber: 3.7 Consensus size: 68
66967001 GTACGTCAAT
* *
66967011 ACATTAAACATGGGTTCATAATGTGTACGACCATAGCTCGACTATGGCAACATATGGAGTCCGCT
1 ACATTAAACATGGGTTCATAATGTGTAAGACCATAGCTCGACTATGGCAACATATGGAGTCCACT
66967076 AGG
66 AGG
** * ***
66967079 ACATTAAACATCAGTTCATAATATGTAAGACCATAGCTC-AGCTATGGCAACATAAAAAGTCCAC
1 ACATTAAACATGGGTTCATAATGTGTAAGACCATAGCTCGA-CTATGGCAACATATGGAGTCCAC
* *
66967143 CAAG
65 TAGG
* * * *
66967147 ACATTAAACATGGGTTCATAATGTGTAAGACCATAGTTTGACTATGACAACATATGGTGTCCACT
1 ACATTAAACATGGGTTCATAATGTGTAAGACCATAGCTCGACTATGGCAACATATGGAGTCCACT
66967212 AGG
66 AGG
* * * * *
66967215 ACATTAAATAGGGGTTCATATTGTGTAAGACCATAGCTCGTCTCTGGCA
1 ACATTAAACATGGGTTCATAATGTGTAAGACCATAGCTCGACTATGGCA
66967264 GCATGTGAAG
Statistics
Matches: 153, Mismatches: 30, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
67 1 0.01
68 151 0.99
69 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.26
Consensus pattern (68 bp):
ACATTAAACATGGGTTCATAATGTGTAAGACCATAGCTCGACTATGGCAACATATGGAGTCCACT
AGG
Found at i:66973590 original size:40 final size:40
Alignment explanation
Indices: 66973515--66973738 Score: 260
Period size: 40 Copynumber: 5.7 Consensus size: 40
66973505 GCTACTCGTT
* *
66973515 CAAATGCCTTC-GGACATAGCCCGG-TTATAGCAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
66973554 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
66973594 CAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
66973634 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
66973673 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
66973714 CAAA-GCCTTTGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
66973739 CATCATTCGA
Statistics
Matches: 160, Mismatches: 19, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
38 2 0.01
39 42 0.26
40 103 0.64
41 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:66973657 original size:79 final size:80
Alignment explanation
Indices: 66973515--66973685 Score: 240
Period size: 79 Copynumber: 2.2 Consensus size: 80
66973505 GCTACTCGTT
* *
66973515 CAAATGCCTTC-GGACATAGCCCGGTTATAGCAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAACCCGATTATAGCAACTCGCACAAATGCCTTCGGGACTTAACCCGG
*
66973579 ATTTAGTAACTCGCA
66 AATTAGTAACTCGCA
* * * *
66973594 CAAATGCCTTCGGGACTTAACCCGAATT-TAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCG
1 CAAATGCCTTCGGGACATAACCCG-ATTATAGCAACTCGCACAAATGCCTTCGGGACTTAACCCG
*
66973657 GAATTAGTATCTCGCA
65 GAATTAGTAACTCGCA
66973673 CAAATGCCTTCGG
1 CAAATGCCTTCGG
66973686 ATCTTAGTCC
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
79 46 0.56
80 34 0.41
81 2 0.02
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.24
Consensus pattern (80 bp):
CAAATGCCTTCGGGACATAACCCGATTATAGCAACTCGCACAAATGCCTTCGGGACTTAACCCGG
AATTAGTAACTCGCA
Found at i:66973722 original size:79 final size:79
Alignment explanation
Indices: 66973515--66973738 Score: 229
Period size: 79 Copynumber: 2.8 Consensus size: 79
66973505 GCTACTCGTT
* * ** * * *
66973515 CAAATGCCTTC-GGACATAGCCCGGTTATAGCAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGAATATAGTAACTAGCACAAA-GCCTTCGGGACTTAGCCCGG
*
66973579 ATTTAGTAACTCGCA
65 AATTAGTAACTCGCA
* * *
66973594 CAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGACTTAACCCGAATATAGTAACTAGCA-CAAAGCCTTCGGGACTTAGCCCGG
*
66973658 AATTAGTATCTCGCA
65 AATTAGTAACTCGCA
** * * * *
66973673 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTTGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAACCCGAATATAGTAAC-TAGCACAAAGCCTTCGGGACTTAGCCCG
66973737 GA
64 GA
66973739 CATCATTCGA
Statistics
Matches: 121, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
78 3 0.02
79 69 0.57
80 46 0.38
81 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAACCCGAATATAGTAACTAGCACAAAGCCTTCGGGACTTAGCCCGGA
ATTAGTAACTCGCA
Found at i:66973722 original size:119 final size:119
Alignment explanation
Indices: 66973517--66973736 Score: 275
Period size: 119 Copynumber: 1.8 Consensus size: 119
66973507 TACTCGTTCA
* *
66973517 AATGCCTTCGGACATAGCCCGGTTATAGCAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT
1 AATGCCTTCGGACATAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAACCCGGATA
*
66973582 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCACC
66 TAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCACC
* * * * **
66973636 AATGCCTTCGGGCTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGA
1 AATGCCTTCGGACATAGCCCGGATA-TAGCAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGA
* * * *
66973699 TATGGTCACTTAGCACAAA-GCCTTTGGGACTTAGCCCG
64 TATAGTAAC-TAGCACAAATGCCTTCGGGACTTAACCCG
66973737 GACATCATTC
Statistics
Matches: 85, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
118 4 0.05
119 73 0.86
120 8 0.09
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGACATAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAACCCGGATA
TAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCACC
Found at i:66974933 original size:56 final size:56
Alignment explanation
Indices: 66974865--66975040 Score: 334
Period size: 56 Copynumber: 3.1 Consensus size: 56
66974855 TATTAGTTTA
*
66974865 TTGCCAATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
66974921 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
66974977 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
66975033 TTGCCCAT
1 TTGCCCAT
66975041 CATCCCTTGT
Statistics
Matches: 118, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 118 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:66981691 original size:119 final size:120
Alignment explanation
Indices: 66981509--66981729 Score: 297
Period size: 119 Copynumber: 1.9 Consensus size: 120
66981499 TACTCGTTCA
* *
66981509 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
66981574 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCACT
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGAATTTAGTAACTCGCACT
* * **
66981629 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
66981691 ATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCG
66981730 GACATCATTC
Statistics
Matches: 88, Mismatches: 10, Indels: 7
0.84 0.10 0.07
Matches are distributed among these distances:
118 4 0.05
119 64 0.73
120 20 0.23
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCACT
Found at i:66981731 original size:40 final size:41
Alignment explanation
Indices: 66981507--66981731 Score: 268
Period size: 40 Copynumber: 5.6 Consensus size: 41
66981497 GCTACTCGTT
* *
66981507 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTT-GCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTCGCA
* *
66981547 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTCGCA
* * *
66981587 CAAATGCCTTCGGGACTTAACCCGAATTTAGTAAC-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTCGCA
* *
66981627 CTAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATC-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTTCGCA
* * *
66981666 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAACTTCGCA
66981707 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
66981732 CATCATTCGA
Statistics
Matches: 162, Mismatches: 16, Indels: 14
0.84 0.08 0.07
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 117 0.72
41 12 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTCGCA
Found at i:66982926 original size:56 final size:56
Alignment explanation
Indices: 66982859--66982978 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
66982849 TATTAGTTTC
66982859 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
66982915 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
66982971 TTGCCCAT
1 TTGCCCAT
66982979 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:66984973 original size:131 final size:132
Alignment explanation
Indices: 66984742--66985065 Score: 384
Period size: 131 Copynumber: 2.5 Consensus size: 132
66984732 CCCAGTACAG
* * * * * * * *
66984742 TAGGGCACGACTCCTCGAATTTCTAGATATCGAACATCACCTTC-TCTTAAAGAATTTTT-AAAG
1 TAGGGCACGATTCCGCGAATTGCCAAACATCGAACATCACCTTCGTTTTAAAGAATTTTTAAAAA
** * * * * * * *
66984805 ACATGGGTGAAATTCCAAAGGAATATTCGATTGTTTTGAACGAACGGGAAATCGTAACCCAGCAC
66 ACATGAATGAAATTCCAAAGGAACATTCGATTATTTTGAACAAACGAGAAATCGCAACCCAACAA
66984870 GA
131 GA
** * *
66984872 TAGGGCACGATTCC-CGAATTGCCAAACATCGAGTATTACCTTCGTTTTAAAGAGTTTTTAAAAA
1 TAGGGCACGATTCCGCGAATTGCCAAACATCGAACATCACCTTCGTTTTAAAGAATTTTTAAAAA
* * *
66984936 ACATGAATGAAATTCCAAAGGGACATTCGATTATTTTGAGCAAACGAGAAATTGCAACCCAACAA
66 ACATGAATGAAATTCCAAAGGAACATTCGATTATTTTGAACAAACGAGAAATCGCAACCCAACAA
*
66985001 GT
131 GA
* *
66985003 TAGGGCACGATTCCGCGAATTGCCAAATATCGAACATCGCCTTCGTTTTAAAGAATTTTTAAA
1 TAGGGCACGATTCCGCGAATTGCCAAACATCGAACATCACCTTCGTTTTAAAGAATTTTTAAA
66985066 TGAACAATTG
Statistics
Matches: 161, Mismatches: 30, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
129 22 0.14
130 26 0.16
131 71 0.44
132 42 0.26
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.27
Consensus pattern (132 bp):
TAGGGCACGATTCCGCGAATTGCCAAACATCGAACATCACCTTCGTTTTAAAGAATTTTTAAAAA
ACATGAATGAAATTCCAAAGGAACATTCGATTATTTTGAACAAACGAGAAATCGCAACCCAACAA
GA
Found at i:66990713 original size:70 final size:71
Alignment explanation
Indices: 66990597--66990747 Score: 241
Period size: 72 Copynumber: 2.1 Consensus size: 71
66990587 GGGGAATCAT
*
66990597 CACTTAGCAACCCCTCGGGGGAATCAGCAATAGCAACCCCCTTTT-CATTTCAAATATACAATGG
1 CACTTAGCAACCCCTCGGGGGAATCAGCAATAGCAACCCCCTTTTACATTTCAAAGATACAATGG
66990661 ATATCG
66 ATATCG
* ***
66990667 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
1 CACTTAGCAACCCCTCGGGGGAATCAGCA-ATAGCAACCCCCTTTTACATTTCAAAGATACAATG
66990732 GATATCG
65 GATATCG
66990739 CACTTAGCA
1 CACTTAGCA
66990748 CCACCAATGA
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
70 29 0.39
71 15 0.20
72 30 0.41
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.23
Consensus pattern (71 bp):
CACTTAGCAACCCCTCGGGGGAATCAGCAATAGCAACCCCCTTTTACATTTCAAAGATACAATGG
ATATCG
Found at i:66990779 original size:77 final size:71
Alignment explanation
Indices: 66990597--66990784 Score: 227
Period size: 72 Copynumber: 2.6 Consensus size: 71
66990587 GGGGAATCAT
* * *
66990597 CACTTAGCAACCCCTCGGGGGAATCAGCA-ATAGCAACCCCCTTTTCATTTCAAATATACAATGG
1 CACTTAGCAACCCCTCCGGGGAATCAGCACATAGCAACCCCCTTTACATTTCAAAGATACAATGG
66990661 ATATCG
66 ATATCG
* ***
66990667 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
1 CACTTAGCAACCCCTCCGGGGAATCAGCACATAGCAACCCCCTTT-ACATTTCAAAGATACAATG
66990732 GATATCG
65 GATATCG
*
66990739 CACTTAGC-ACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCC
1 CACTTAGCAACC-CC--T---CCGGGGAATCAGCACATAGCAACCCC
66990785 TCGGGGGAAT
Statistics
Matches: 103, Mismatches: 7, Indels: 9
0.87 0.06 0.08
Matches are distributed among these distances:
70 29 0.28
71 18 0.17
72 31 0.30
74 1 0.01
77 24 0.23
ACGTcount: A:0.31, C:0.31, G:0.18, T:0.21
Consensus pattern (71 bp):
CACTTAGCAACCCCTCCGGGGAATCAGCACATAGCAACCCCCTTTACATTTCAAAGATACAATGG
ATATCG
Done.