Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 203 of 255
Found at i:67890851 original size:31 final size:31
Alignment explanation
Indices: 67890811--67890943 Score: 205
Period size: 31 Copynumber: 4.3 Consensus size: 31
67890801 AGTCTTCAGA
67890811 CCAGTGATATGAATAATGAAAAGGCTTCGGC
1 CCAGTGATATGAATAATGAAAAGGCTTCGGC
* *
67890842 CTAGTGATATGAATAATGAAAAGGCTTTGGC
1 CCAGTGATATGAATAATGAAAAGGCTTCGGC
67890873 CCAGTGATATGAATAATGAAAAGGCTTCGGC
1 CCAGTGATATGAATAATGAAAAGGCTTCGGC
* * * *
67890904 CCAGTGACATGGATAATGTAAAGGCTTCAGC
1 CCAGTGATATGAATAATGAAAAGGCTTCGGC
67890935 CCAGT-ATAT
1 CCAGTGATAT
67890944 TCTGAGATTG
Statistics
Matches: 93, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
30 3 0.03
31 90 0.97
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.25
Consensus pattern (31 bp):
CCAGTGATATGAATAATGAAAAGGCTTCGGC
Found at i:67892399 original size:40 final size:40
Alignment explanation
Indices: 67892334--67892426 Score: 143
Period size: 40 Copynumber: 2.3 Consensus size: 40
67892324 GACTATGTTC
*
67892334 GGCACTAAGTGTGCGATTTGAAATAGCTTCGGCTATAAGTA
1 GGCACTAAGTGTGCGAATTGAAATAGCTTCGGCTATAAG-A
* *
67892375 -GCACTAAGTGTGCGAATTGGAATAGCTTCGGCTATATGA
1 GGCACTAAGTGTGCGAATTGAAATAGCTTCGGCTATAAGA
67892414 GGCACTAAGTGTG
1 GGCACTAAGTGTG
67892427 TGATACCGAG
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
39 1 0.02
40 47 0.98
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (40 bp):
GGCACTAAGTGTGCGAATTGAAATAGCTTCGGCTATAAGA
Found at i:67893831 original size:11 final size:12
Alignment explanation
Indices: 67893812--67893841 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
67893802 TGAATTGGTC
67893812 ATGAGAGTTTGA
1 ATGAGAGTTTGA
67893824 AT-AGAGTTTGA
1 ATGAGAGTTTGA
67893835 ATGAGAG
1 ATGAGAG
67893842 GTTGGAGTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.65
12 6 0.35
ACGTcount: A:0.37, C:0.00, G:0.33, T:0.30
Consensus pattern (12 bp):
ATGAGAGTTTGA
Found at i:67895393 original size:27 final size:27
Alignment explanation
Indices: 67895362--67895756 Score: 162
Period size: 27 Copynumber: 14.7 Consensus size: 27
67895352 TTAGCTTACC
*
67895362 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
67895389 AAATTAC-CAAAGTACCCTCGATTTATA
1 AAATTACTGAAA-TACCCTCGATTTGTA
** *
67895416 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
**
67895443 AAATTA-TCGAAATACCCTC-AGTTTACA
1 AAATTACT-GAAATACCCTCGA-TTTGTA
*
67895470 AAATTACTAAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * ***
67895497 AACTTACTGAAATACTCCTGGAAGAG-A
1 AAATTACTGAAATAC-CCTCGATTTGTA
* * ** *
67895524 GAATTAC-CATTTTACCCTCGATTTATA
1 AAATTACTGA-AATACCCTCGATTTGTA
* * *** * ***
67895551 GAATTACCGTCTTATCCTCGATTTACG
1 AAATTACTGAAATACCCTCGATTTGTA
* ** **
67895578 AAATTAC-CATTTTACCCTCGATTTACA
1 AAATTACTGA-AATACCCTCGATTTGTA
* ** **
67895605 AAATTAC-CATTTTACCCTCGA-TTACA
1 AAATTACTGA-AATACCCTCGATTTGTA
* * **
67895631 AAATTACTGAAATACCCTTGGTTTACA
1 AAATTACTGAAATACCCTCGATTTGTA
** * *
67895658 AAATTACCAAAATACCC-CTAATTTGTG
1 AAATTACTGAAATACCCTC-GATTTGTA
* * *
67895685 AAATTACCGAAATACCCTTGGTTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
** *
67895712 AAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACTGAAATACCCTC-GATTTGTA
*
67895739 AAATTACCGAAATACCCT
1 AAATTACTGAAATACCCT
67895757 TGTAGGGTAG
Statistics
Matches: 287, Mismatches: 64, Indels: 33
0.75 0.17 0.09
Matches are distributed among these distances:
26 29 0.10
27 246 0.86
28 12 0.04
ACGTcount: A:0.36, C:0.22, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:67895509 original size:54 final size:54
Alignment explanation
Indices: 67895357--67895511 Score: 181
Period size: 54 Copynumber: 2.9 Consensus size: 54
67895347 ATACTTTAGC
* * * *
67895357 TTACCAAATTACTGAAATACCCTCGACTTGTAAAATTAC-CAAAGTACCCTCGAT
1 TTACAAAATTACTAAAATACCCTCGATTTGTAAAATTACTGAAA-TACCCTCGAT
* ** *
67895411 TTATAAAATTACCCAAATATCCTCGATTTGTAAAATTA-TCGAAATACCCTC-AGT
1 TTACAAAATTACTAAAATACCCTCGATTTGTAAAATTACT-GAAATACCCTCGA-T
*
67895465 TTACAAAATTACTAAAATACCCTCGATTTGTAAACTTACTGAAATAC
1 TTACAAAATTACTAAAATACCCTCGATTTGTAAAATTACTGAAATAC
67895512 TCCTGGAAGA
Statistics
Matches: 85, Mismatches: 12, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
53 1 0.01
54 80 0.94
55 4 0.05
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.31
Consensus pattern (54 bp):
TTACAAAATTACTAAAATACCCTCGATTTGTAAAATTACTGAAATACCCTCGAT
Found at i:67895705 original size:54 final size:54
Alignment explanation
Indices: 67895631--67895758 Score: 220
Period size: 54 Copynumber: 2.4 Consensus size: 54
67895621 CTCGATTACA
*
67895631 AAATTACTGAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCGAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTAATTTGTG
** *
67895685 AAATTACCGAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCGAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTAATTTGTG
67895739 AAATTACCGAAATACCCTTG
1 AAATTACCGAAATACCCTTG
67895759 TAGGGTAGAA
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 70 1.00
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.30
Consensus pattern (54 bp):
AAATTACCGAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTAATTTGTG
Found at i:67895770 original size:27 final size:27
Alignment explanation
Indices: 67895740--67895881 Score: 176
Period size: 27 Copynumber: 5.3 Consensus size: 27
67895730 TGATTTGTGA
67895740 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
** *
67895767 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
67895794 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * * * *
67895821 AAATACTGAAGTACCCCTGTAAGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * * *
67895848 AATTACCGAGATAGCCTTGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
67895875 AATTACC
1 AATTACC
67895882 ATTTTGCCCC
Statistics
Matches: 95, Mismatches: 20, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 95 1.00
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:67895771 original size:54 final size:54
Alignment explanation
Indices: 67895659--67895822 Score: 217
Period size: 54 Copynumber: 3.0 Consensus size: 54
67895649 TGGTTTACAA
* ** *
67895659 AATTACCAAAATACCCCTAATTTGTGAAATTACCGAAATACCCTTGGT-TTGTAA
1 AATTACCAAAATACCCCTGATTTGTGAAATTACCGAAATACCCTT-GTAGGGTAG
67895713 AATTACCAAAATACCCCTGATTTGTGAAATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCAAAATACCCCTGATTTGTGAAATTACCGAAATACCCTTGTAGGGTAG
* * *
67895767 AATTACTAAAATACCCCTG--TAGGGTAGAATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCAAAATACCCCTGATTTGTG-A-AATTACCGAAATACCCTTGTAGGGTAG
67895821 AA
1 AA
67895823 ATACTGAAGT
Statistics
Matches: 100, Mismatches: 7, Indels: 6
0.88 0.06 0.05
Matches are distributed among these distances:
52 3 0.03
53 3 0.03
54 94 0.94
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.28
Consensus pattern (54 bp):
AATTACCAAAATACCCCTGATTTGTGAAATTACCGAAATACCCTTGTAGGGTAG
Found at i:67895836 original size:54 final size:54
Alignment explanation
Indices: 67895740--67895877 Score: 206
Period size: 54 Copynumber: 2.6 Consensus size: 54
67895730 TGATTTGTGA
* *
67895740 AATTACCGAAATACCCTTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAAATACTAAAATACCCCTGTAAGGTAG
* *
67895794 AATTACCGAAATACCCTTGTAGGGTAGAAATACTGAAGTACCCCTGTAAGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAAATACTAAAATACCCCTGTAAGGTAG
* * *
67895848 AATTACCGAGATAGCCTTGTGGGGTA-AAAT
1 AATTACCGAAATACCCTTGTAGGGTAGAAAT
67895878 TACCATTTTG
Statistics
Matches: 77, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
53 4 0.05
54 73 0.95
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.25
Consensus pattern (54 bp):
AATTACCGAAATACCCTTGTAGGGTAGAAATACTAAAATACCCCTGTAAGGTAG
Found at i:67896308 original size:31 final size:31
Alignment explanation
Indices: 67896273--67896348 Score: 107
Period size: 31 Copynumber: 2.5 Consensus size: 31
67896263 TTGCATTCAC
* * *
67896273 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTAATTCTGATTCTGTCACCTGATACTG
*
67896304 ATTCTAATTCTGATTCTGTCACCTGATTCTG
1 ATTCTAATTCTGATTCTGTCACCTGATACTG
*
67896335 ATTCTAGTTCTGAT
1 ATTCTAATTCTGAT
67896349 AATGTTTCTT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.47
Consensus pattern (31 bp):
ATTCTAATTCTGATTCTGTCACCTGATACTG
Found at i:67896321 original size:6 final size:6
Alignment explanation
Indices: 67896273--67896348 Score: 50
Period size: 6 Copynumber: 12.3 Consensus size: 6
67896263 TTGCATTCAC
* * *
67896273 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTA ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
*
67896322 -TCACCTG ATTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG A-TTCTG AT
67896349 AATGTTTCTT
Statistics
Matches: 54, Mismatches: 8, Indels: 16
0.69 0.10 0.21
Matches are distributed among these distances:
5 4 0.07
6 41 0.76
7 7 0.13
8 2 0.04
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:67898005 original size:27 final size:27
Alignment explanation
Indices: 67897966--67898024 Score: 91
Period size: 27 Copynumber: 2.2 Consensus size: 27
67897956 GAAGTGTATT
*
67897966 ATACTGGTGGCTTCGCCACATATACTG
1 ATACTAGTGGCTTCGCCACATATACTG
* *
67897993 TTACTAGTGGCTTTGCCACATATACTG
1 ATACTAGTGGCTTCGCCACATATACTG
67898020 ATACT
1 ATACT
67898025 GACAGCTTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.34
Consensus pattern (27 bp):
ATACTAGTGGCTTCGCCACATATACTG
Found at i:67898032 original size:27 final size:27
Alignment explanation
Indices: 67897975--67898035 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
67897965 TATACTGGTG
* * **
67897975 GCTTCGCCACATATACTGTTACTAGTG
1 GCTTTGCCACATATACTGATACTAGCA
67898002 GCTTTGCCACATATACTGATACT-GACA
1 GCTTTGCCACATATACTGATACTAG-CA
67898029 GCTTTGC
1 GCTTTGC
67898036 TGCGATGCTG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 1 0.03
27 28 0.97
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.33
Consensus pattern (27 bp):
GCTTTGCCACATATACTGATACTAGCA
Found at i:67910716 original size:33 final size:33
Alignment explanation
Indices: 67910698--67910773 Score: 120
Period size: 33 Copynumber: 2.3 Consensus size: 33
67910688 TAATAAAATA
67910698 AAATATATAAATCCAAAAAAATAAAAAATATAT
1 AAATATATAAATCCAAAAAAATAAAAAATATAT
*
67910731 AAATATATAAATCCAAAAAATATAAAAATTA-AT
1 AAATATATAAATCCAAAAAA-ATAAAAAATATAT
67910764 AAATA-ATAAA
1 AAATATATAAA
67910774 AATAAAATTA
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
32 5 0.12
33 27 0.66
34 9 0.22
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.25
Consensus pattern (33 bp):
AAATATATAAATCCAAAAAAATAAAAAATATAT
Found at i:67910748 original size:25 final size:25
Alignment explanation
Indices: 67910720--67910767 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
67910710 CCAAAAAAAT
*
67910720 AAAAAATATATAAA-TATATAAATCC
1 AAAAAATATAAAAATTA-ATAAATCC
67910745 AAAAAATATAAAAATTAATAAAT
1 AAAAAATATAAAAATTAATAAAT
67910768 AATAAAAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 19 0.90
26 2 0.10
ACGTcount: A:0.69, C:0.04, G:0.00, T:0.27
Consensus pattern (25 bp):
AAAAAATATAAAAATTAATAAATCC
Found at i:67910757 original size:8 final size:8
Alignment explanation
Indices: 67910714--67910777 Score: 53
Period size: 8 Copynumber: 7.9 Consensus size: 8
67910704 ATAAATCCAA
67910714 AAAAATA-
1 AAAAATAT
67910721 AAAAATAT
1 AAAAATAT
*
67910729 ATAAATAT
1 AAAAATAT
*
67910737 ATAAATCCA-
1 AAAAAT--AT
67910746 AAAAATAT
1 AAAAATAT
67910754 AAAAAT-T
1 AAAAATAT
67910761 AATAAATAAT
1 AA-AAAT-AT
67910771 AAAAATA
1 AAAAATA
67910778 AAATTAAGAC
Statistics
Matches: 48, Mismatches: 2, Indels: 13
0.76 0.03 0.21
Matches are distributed among these distances:
7 11 0.23
8 24 0.50
9 9 0.19
10 4 0.08
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.25
Consensus pattern (8 bp):
AAAAATAT
Found at i:67910772 original size:17 final size:16
Alignment explanation
Indices: 67910718--67910776 Score: 55
Period size: 17 Copynumber: 3.5 Consensus size: 16
67910708 ATCCAAAAAA
*
67910718 ATAAAAAATATATAAAT
1 ATAAAAATTA-ATAAAT
* * *
67910735 ATATAAATCCAAAAAAT
1 ATAAAAAT-TAATAAAT
67910752 ATAAAAATTAATAAAT
1 ATAAAAATTAATAAAT
67910768 AATAAAAAT
1 -ATAAAAAT
67910777 AAAATTAAGA
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
16 6 0.18
17 26 0.79
18 1 0.03
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.27
Consensus pattern (16 bp):
ATAAAAATTAATAAAT
Found at i:67910774 original size:25 final size:25
Alignment explanation
Indices: 67910720--67910777 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 25
67910710 CCAAAAAAAT
* *
67910720 AAAAAATATATAAATATATAAATCC
1 AAAAAATATAAAAATATATAAATCA
67910745 AAAAAATATAAAAAT-TAATAAAT-A
1 AAAAAATATAAAAATAT-ATAAATCA
67910769 ATAAAAATA
1 A-AAAAATA
67910778 AAATTAAGAC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 2 0.07
25 27 0.93
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (25 bp):
AAAAAATATAAAAATATATAAATCA
Found at i:67916013 original size:35 final size:35
Alignment explanation
Indices: 67915974--67916088 Score: 90
Period size: 35 Copynumber: 3.1 Consensus size: 35
67915964 CCGACTAGTA
67915974 CTGGGTGCAAATATTGTTGGTTTATCCAACTAGAG
1 CTGGGTGCAAATATTGTTGGTTTATCCAACTAGAG
* * * **
67916009 CTGGGCT-CACAATTATTATCGTTAGTATACCCGGCTAGCA-
1 CTGGG-TGCA-AA-TA-T-T-GTTGGTTTATCCAACTAG-AG
* *
67916049 CTAGGTGCAAATATTCTTGGTTTATCCAACTAGAG
1 CTGGGTGCAAATATTGTTGGTTTATCCAACTAGAG
67916084 CTGGG
1 CTGGG
67916089 CTCACATTCA
Statistics
Matches: 58, Mismatches: 13, Indels: 18
0.65 0.15 0.20
Matches are distributed among these distances:
34 1 0.02
35 23 0.40
36 4 0.07
37 3 0.05
38 3 0.05
39 4 0.07
40 19 0.33
41 1 0.02
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.32
Consensus pattern (35 bp):
CTGGGTGCAAATATTGTTGGTTTATCCAACTAGAG
Found at i:67916022 original size:75 final size:75
Alignment explanation
Indices: 67915914--67916094 Score: 299
Period size: 75 Copynumber: 2.4 Consensus size: 75
67915904 CGCAATAACC
* * * * *
67915914 GTTGGTTCATCCAACTAGAGCTAGGCTCACAATTATTATCTTTAGTATACCCGACTAGTACTGGG
1 GTTGGTTTATCCAACTAGAGCTGGGCTCACAATTATTATCGTTAGTATACCCGACTAGCACTAGG
67915979 TGCAAATATT
66 TGCAAATATT
*
67915989 GTTGGTTTATCCAACTAGAGCTGGGCTCACAATTATTATCGTTAGTATACCCGGCTAGCACTAGG
1 GTTGGTTTATCCAACTAGAGCTGGGCTCACAATTATTATCGTTAGTATACCCGACTAGCACTAGG
67916054 TGCAAATATT
66 TGCAAATATT
*
67916064 CTTGGTTTATCCAACTAGAGCTGGGCTCACA
1 GTTGGTTTATCCAACTAGAGCTGGGCTCACA
67916095 TTCAATACTA
Statistics
Matches: 99, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
75 99 1.00
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (75 bp):
GTTGGTTTATCCAACTAGAGCTGGGCTCACAATTATTATCGTTAGTATACCCGACTAGCACTAGG
TGCAAATATT
Found at i:67916398 original size:13 final size:13
Alignment explanation
Indices: 67916380--67916404 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67916370 GAATTAGTAT
67916380 GTGTGAAAATTTC
1 GTGTGAAAATTTC
67916393 GTGTGAAAATTT
1 GTGTGAAAATTT
67916405 TATCGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:67918207 original size:23 final size:24
Alignment explanation
Indices: 67918181--67918226 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
67918171 TGCCATGTGA
*
67918181 TATGGCTTGGTTTTGGT-TATGAT
1 TATGGCTTGATTTTGGTATATGAT
*
67918204 TATGGTTTGATTTTGGTATATGA
1 TATGGCTTGATTTTGGTATATGA
67918227 AATGTGATGC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 15 0.75
24 5 0.25
ACGTcount: A:0.17, C:0.02, G:0.28, T:0.52
Consensus pattern (24 bp):
TATGGCTTGATTTTGGTATATGAT
Found at i:67927228 original size:28 final size:29
Alignment explanation
Indices: 67927184--67927238 Score: 94
Period size: 28 Copynumber: 1.9 Consensus size: 29
67927174 GGAAGTTAGT
67927184 AAATAAAAGAAAATCTCAAAGACAGTAGC
1 AAATAAAAGAAAATCTCAAAGACAGTAGC
*
67927213 AAATAAAA-AAAATCTCAAAGATAGTA
1 AAATAAAAGAAAATCTCAAAGACAGTA
67927239 TATCCAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 17 0.68
29 8 0.32
ACGTcount: A:0.62, C:0.11, G:0.11, T:0.16
Consensus pattern (29 bp):
AAATAAAAGAAAATCTCAAAGACAGTAGC
Found at i:67929188 original size:21 final size:21
Alignment explanation
Indices: 67929164--67929211 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
67929154 TAAAAATAAT
67929164 AATTGAAGATGG-AGAATTGAG
1 AATTGAAGATGGAAG-ATTGAG
* *
67929185 AATTTAAGATTGAAGATTGAG
1 AATTGAAGATGGAAGATTGAG
*
67929206 TATTGA
1 AATTGA
67929212 GTATTGAGTA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 20 0.91
22 2 0.09
ACGTcount: A:0.42, C:0.00, G:0.27, T:0.31
Consensus pattern (21 bp):
AATTGAAGATGGAAGATTGAG
Found at i:67929210 original size:14 final size:15
Alignment explanation
Indices: 67929193--67929226 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
67929183 AGAATTTAAG
67929193 ATTGAAG-ATTGAGT
1 ATTGAAGTATTGAGT
67929207 ATTG-AGTATTGAGT
1 ATTGAAGTATTGAGT
67929221 ATTGAA
1 ATTGAA
67929227 TTGAAAATAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 2 0.11
14 15 0.83
15 1 0.06
ACGTcount: A:0.35, C:0.00, G:0.26, T:0.38
Consensus pattern (15 bp):
ATTGAAGTATTGAGT
Found at i:67940182 original size:36 final size:36
Alignment explanation
Indices: 67940135--67940206 Score: 90
Period size: 36 Copynumber: 2.0 Consensus size: 36
67940125 ATTGAAAGAG
*
67940135 AAAAGAAAATAATTCAATCCCAAATGGAAATAGGAA
1 AAAAGAAAATAATCCAATCCCAAATGGAAATAGGAA
* * * * *
67940171 AAAAGAGAATAATCCAATTCTAAATTGAAGTAGGAA
1 AAAAGAAAATAATCCAATCCCAAATGGAAATAGGAA
67940207 TACAAAAGTA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.56, C:0.10, G:0.15, T:0.19
Consensus pattern (36 bp):
AAAAGAAAATAATCCAATCCCAAATGGAAATAGGAA
Found at i:67941340 original size:42 final size:42
Alignment explanation
Indices: 67941227--67941350 Score: 142
Period size: 43 Copynumber: 2.9 Consensus size: 42
67941217 ATTATCGTAC
* * *
67941227 CAATGTCATATCCTAGATATGGTCTTACATGTAATCTCGTAT
1 CAATGCCATATCCTAGATATGGTCTTACACGTAATCTCATAT
* * * * *
67941269 CGATGACAATAGCCAAGCTATGGTCTTACACG-AAGTCTCATAT
1 CAATG-CCATATCCTAGATATGGTCTTACACGTAA-TCTCATAT
*
67941312 CAATGCCATATCCTATATATGGTCTTACACGTAATCTCA
1 CAATGCCATATCCTAGATATGGTCTTACACGTAATCTCA
67941351 GTAACCTTAA
Statistics
Matches: 65, Mismatches: 14, Indels: 6
0.76 0.16 0.07
Matches are distributed among these distances:
42 32 0.49
43 33 0.51
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.32
Consensus pattern (42 bp):
CAATGCCATATCCTAGATATGGTCTTACACGTAATCTCATAT
Found at i:67942691 original size:32 final size:31
Alignment explanation
Indices: 67942620--67942691 Score: 76
Period size: 32 Copynumber: 2.3 Consensus size: 31
67942610 TTATCGTTTC
*
67942620 TTCATATA-CATATATCATCCATTTCAATAT
1 TTCATATATCATATACCATCCATTTCAATAT
* *
67942650 ATCAATATATCATGTACCAT-CATTTCCAAGTAT
1 TTC-ATATATCATATACCATCCATTT-CAA-TAT
67942683 TTCATATAT
1 TTCATATAT
67942692 ATACTTGTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
30 2 0.06
31 10 0.29
32 17 0.50
33 5 0.15
ACGTcount: A:0.36, C:0.19, G:0.03, T:0.42
Consensus pattern (31 bp):
TTCATATATCATATACCATCCATTTCAATAT
Found at i:67948729 original size:313 final size:308
Alignment explanation
Indices: 67948143--67948772 Score: 778
Period size: 313 Copynumber: 2.0 Consensus size: 308
67948133 AGAGAGAGAA
* * *
67948143 AAAAAAGATATTTCATTGTATATTATTTGTGTATAATAAAAATTAGTATTCGAGCTTTTAATTTT
1 AAAAAGGATATTTCATTGTATATTATTTGTATATAATAAAAATTAGTATTCGAGCTATTAATTTT
* ** *
67948208 TTATTACGCTTCCAACAAGTGGTATCCGAGCTAGGTTTGTGTCGACGTCACAATGGCAAACATGA
66 TTATTACGCTTCCAACAAGTAGTATCCGAGCTAGGTTCATGTCAACGTCACAATGGCAAACATGA
** * * * * *
67948273 GTCATAGATCCTGAAATTGACAAAGACAAATTGGAGCAATTGGAGCATCCAGATGAAGGCTTTGC
131 GTCATAGATCCCAAAATTAACAAAGAAAAATTAGAACAATTGGAACATCCAGATGAAGGCTTTGC
* * * *** * *
67948338 TTGGTTTTCAAGATTGTTGGGACATTGTCGAAGAAGGATATTTCGAGCCCGAAAATGCAACTGCC
196 TCGATTCTCAAGATTGTTACAACATTGTCAAAGAAGGATATTTCGAGCCCGAAAATGCAACTACC
* *
67948403 AAAGCGGCTTTGACAAATAAAGAAAAAAGAGTATTGAAAGAAGCTAGT
261 AAAGCGGCTTTGACAAACAAAGAAAAAAGAGTATAGAAAGAAGCTAGT
* * * * *
67948451 AAAAAGGATATTTCTATTGTGTGTTATTTGTATGTAATGAAAATTAGTATTTGAGCTATTAATTT
1 AAAAAGGATATTTC-ATTGTATATTATTTGTATATAATAAAAATTAGTATTCGAGCTATTAATTT
* * * *
67948516 TTTATTACGCTTCTAACAAGTAGTATCCGAGTTAGGTTCATGTCAATGTCACAATGGTAAACATG
65 TTTATTACGCTTCCAACAAGTAGTATCCGAGCTAGGTTCATGTCAACGTCACAATGGCAAACATG
* *
67948581 ATTCAATCGTAGATCCCAAAATTAACAAAGAAAAATTATAACAATTGGAACATCCAGATGAAGGC
130 AGTC-A---TAGATCCCAAAATTAACAAAGAAAAATTAGAACAATTGGAACATCCAGATGAAGGC
* * * ** * *
67948646 TTTGCTCGATTCTCAAGATTGTTACAACGTTGTCAAAGAAGGATATGTT-TAGTCTTAAGATGTA
191 TTTGCTCGATTCTCAAGATTGTTACAACATTGTCAAAGAAGGATAT-TTCGAGCCCGAAAATGCA
* * * *
67948710 GCTACCGAAGTGGCTTTGACAAACAAAGAAAAAAGAGTATAGAAAGAAGCTCGT
255 ACTACCAAAGCGGCTTTGACAAACAAAGAAAAAAGAGTATAGAAAGAAGCTAGT
67948764 -AAAAGGATA
1 AAAAAGGATA
67948773 AGAGGGCATT
Statistics
Matches: 270, Mismatches: 46, Indels: 8
0.83 0.14 0.02
Matches are distributed among these distances:
308 13 0.05
309 103 0.38
310 1 0.00
312 9 0.03
313 142 0.53
314 2 0.01
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.30
Consensus pattern (308 bp):
AAAAAGGATATTTCATTGTATATTATTTGTATATAATAAAAATTAGTATTCGAGCTATTAATTTT
TTATTACGCTTCCAACAAGTAGTATCCGAGCTAGGTTCATGTCAACGTCACAATGGCAAACATGA
GTCATAGATCCCAAAATTAACAAAGAAAAATTAGAACAATTGGAACATCCAGATGAAGGCTTTGC
TCGATTCTCAAGATTGTTACAACATTGTCAAAGAAGGATATTTCGAGCCCGAAAATGCAACTACC
AAAGCGGCTTTGACAAACAAAGAAAAAAGAGTATAGAAAGAAGCTAGT
Found at i:67956085 original size:272 final size:271
Alignment explanation
Indices: 67955598--67956133 Score: 912
Period size: 272 Copynumber: 2.0 Consensus size: 271
67955588 TTTGATAAGC
*
67955598 TTCATTTTCTGCATTTCGGGTACACACCTGGTAATGATTTGATGCGAGAACTATCCCGAGCCTTC
1 TTCATTTTCTGCATTTCGGGTACACACCTGGTAATGATTTGATGCAAGAACTATCCCGAGCCTTC
* * *
67955663 TAGAACCTAAAAACCAACATAACACACTCAATTTTAATCTTTTTACACCCGATTGAATCGAAAAC
66 CAGAACCTAAAAACCAACATAACACACTCAATTTTAATCTTTTTACACCCGATTGAACCAAAAAC
67955728 CCGAAATCAACCATAACTTAAATCAAACACTTACCACTTACTCCAACACTGTGAACGATTAACTA
131 CCGAAATCAACCATAACTTAAATCAAACACTTACCACTTACTCCAACACTGTGAACGATTAACTA
* * * *
67955793 CGATCCCGTAAGATTAGAATCACGATCTTCTCGACTCACTGCTGCCCAAAACAAAGGTATAATCC
196 CGATCCCGTAAGAATAGAATCACAACCTTCTCGACTCACTGCTGCCCAAAACAAAGGTATAACCC
67955858 CAATCAACACT
261 CAATCAACACT
** *
67955869 TTCATTTTCTGCATTTTTGGTACACACCTGGTAATGATTTGATGCAATAACTATCCCGAGCCTTC
1 TTCATTTTCTGCATTTCGGGTACACACCTGGTAATGATTTGATGCAAGAACTATCCCGAGCCTTC
*
67955934 CAGAACCTAAAAACCAACATAACAACGCTCAATTTTAATCTTTTTACACCCGATTGAACCAAAAA
66 CAGAACCTAAAAACCAACATAAC-ACACTCAATTTTAATCTTTTTACACCCGATTGAACCAAAAA
* *
67955999 CCCGAAATCAACCATAACTTAAATCAAGCACTTACCACTTATTCCAACACTGTGAAAC-ATTAAC
130 CCCGAAATCAACCATAACTTAAATCAAACACTTACCACTTACTCCAACACTGTG-AACGATTAAC
*
67956063 TACGATCCCGTAAGAATAGAATCACAACCTTCTCGACTCGCTGCTGCCCAAAACAAAGGTATAAC
194 TACGATCCCGTAAGAATAGAATCACAACCTTCTCGACTCACTGCTGCCCAAAACAAAGGTATAAC
67956128 CCCAAT
259 CCCAAT
67956134 TAAAACTTGG
Statistics
Matches: 248, Mismatches: 15, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
271 83 0.33
272 162 0.65
273 3 0.01
ACGTcount: A:0.35, C:0.27, G:0.11, T:0.26
Consensus pattern (271 bp):
TTCATTTTCTGCATTTCGGGTACACACCTGGTAATGATTTGATGCAAGAACTATCCCGAGCCTTC
CAGAACCTAAAAACCAACATAACACACTCAATTTTAATCTTTTTACACCCGATTGAACCAAAAAC
CCGAAATCAACCATAACTTAAATCAAACACTTACCACTTACTCCAACACTGTGAACGATTAACTA
CGATCCCGTAAGAATAGAATCACAACCTTCTCGACTCACTGCTGCCCAAAACAAAGGTATAACCC
CAATCAACACT
Found at i:67958056 original size:313 final size:305
Alignment explanation
Indices: 67957462--67958089 Score: 866
Period size: 313 Copynumber: 2.0 Consensus size: 305
67957452 TAGAGAGAGA
* *
67957462 AAAAAAGATATTTTATTGTATGTCATTTGTGTATAATAAAAATTAGTATTCGAGCTTTTAATTTT
1 AAAAAAGATATTTTATTGTATGTCATTTGTATATAATAAAAATTAGTATTCGAGCTATTAATTTT
*
67957527 TTATTACGCTTCCAACAAGTGGTATCCGAGCTAGGTTTGTGCAATCACAATGGAAAACATGATTC
66 TTATTACGCTTCCAACAAGTAGTATCCGAGCTAGGTTTGTGCAATCACAATGGAAAACATGATTC
** * * *
67957592 ATAGATCCTGAAATTGACAAAGACAAATTATAGCAATTGGAGCATCCAGATGAAGGCTTTGCTCG
131 ATAGATCCCAAAATTAACAAAGACAAATTATAACAATTGGAACATCCAGATGAAGGCTTTGCTCG
* * **
67957657 GTTCTCAAGATTGTTGAGACGTTGTCAAAGAAGGATATTTCGAGCCCGAAAATGCAACTGTCAAA
196 ATTCTCAAGATTGTTGAGACGTTGTCAAAGAAGGATATGTCGAGCCCGAAAATGCAACTACCAAA
* * *
67957722 GTGGCTTTGACAAACAAAG-AAAAAGAAGTATTGGAAGAAGCTCGT
261 GTGGCTTTGACAAACAAAGAAAAAAG-AGTATAGAAAGAAGCTCAT
* * * * *
67957767 AAAAAGGATATTTCTATTGTGTGTTATTTGTATGTAATAAAAATTAGTATTTGAGCTATTAATTT
1 AAAAAAGATATTT-TATTGTATGTCATTTGTATATAATAAAAATTAGTATTCGAGCTATTAATTT
* * *
67957832 TTTATTACGCTTCTAACAAGTAGTATCTGAGCTAGGTTCATGT-CAATGTCACAATGGTAAACAT
65 TTTATTACGCTTCCAACAAGTAGTATCCGAGCTAGGTT--TGTGCAA--TCACAATGGAAAACAT
*
67957896 GATTCAATCGTAGATCCCAAAATTAACAAAGACAAATTATAACAATTGGAACATCTAGATGAAGG
126 GATTC-A---TAGATCCCAAAATTAACAAAGACAAATTATAACAATTGGAACATCCAGATGAAGG
* ** *
67957961 CTTTGCTCGATTCTCAAGATTGTTGCA-ACGTTGTCAAAGAAGGATATGTCGAGTCTTAAGATGC
187 CTTTGCTCGATTCTCAAGATTGTTG-AGACGTTGTCAAAGAAGGATATGTCGAGCCCGAAAATGC
* *
67958025 AGCTACCGAAGTGGCTTTGACAAACAAAGAAAAAAGAGTATAGAAAGAAGCTCAT
251 AACTACCAAAGTGGCTTTGACAAACAAAGAAAAAAGAGTATAGAAAGAAGCTCAT
67958080 AAAAAAGATA
1 AAAAAAGATA
67958090 AGAGGGCATT
Statistics
Matches: 281, Mismatches: 31, Indels: 14
0.86 0.10 0.04
Matches are distributed among these distances:
305 12 0.04
306 80 0.28
307 3 0.01
308 3 0.01
309 20 0.07
310 1 0.00
313 155 0.55
314 7 0.02
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (305 bp):
AAAAAAGATATTTTATTGTATGTCATTTGTATATAATAAAAATTAGTATTCGAGCTATTAATTTT
TTATTACGCTTCCAACAAGTAGTATCCGAGCTAGGTTTGTGCAATCACAATGGAAAACATGATTC
ATAGATCCCAAAATTAACAAAGACAAATTATAACAATTGGAACATCCAGATGAAGGCTTTGCTCG
ATTCTCAAGATTGTTGAGACGTTGTCAAAGAAGGATATGTCGAGCCCGAAAATGCAACTACCAAA
GTGGCTTTGACAAACAAAGAAAAAAGAGTATAGAAAGAAGCTCAT
Found at i:67960559 original size:40 final size:40
Alignment explanation
Indices: 67960465--67960689 Score: 283
Period size: 40 Copynumber: 5.6 Consensus size: 40
67960455 TATTCGAATG
*
67960465 ATATCCGGGCTAA-ATCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGA-CCCGAAGGCATTTGTGCTA-GTGACT
* * * * *
67960506 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
* *
67960546 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
67960586 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
67960626 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
*
67960666 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
67960690 CTTGTGCAAG
Statistics
Matches: 159, Mismatches: 22, Indels: 7
0.85 0.12 0.04
Matches are distributed among these distances:
39 1 0.01
40 129 0.81
41 28 0.18
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:67960679 original size:120 final size:121
Alignment explanation
Indices: 67960465--67960689 Score: 321
Period size: 120 Copynumber: 1.9 Consensus size: 121
67960455 TATTCGAATG
* * *
67960465 ATATCCGGGCTAAATCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* * *
67960530 ATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
66 ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
* *
67960586 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
* *
67960649 CATTTATGCTAG-TGACCACATCCGGGCTAAGACCCGAAGGC
65 CATTCATGCGAGTTG-CCACATCCGGGCTAAGACCCGAAGGC
67960690 CTTGTGCAAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
119 3 0.03
120 57 0.62
121 32 0.35
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (121 bp):
ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
Found at i:67963603 original size:33 final size:33
Alignment explanation
Indices: 67963566--67963631 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
67963556 GAAAAGAAAA
67963566 TTGAAGGATTATTTTTCAGTGATGACAAAGACG
1 TTGAAGGATTATTTTTCAGTGATGACAAAGACG
* *
67963599 TTGAAGGATTATTTTTCATTGATGATAAAGACG
1 TTGAAGGATTATTTTTCAGTGATGACAAAGACG
67963632 ACGACTTCAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.33, C:0.08, G:0.23, T:0.36
Consensus pattern (33 bp):
TTGAAGGATTATTTTTCAGTGATGACAAAGACG
Found at i:67969799 original size:52 final size:52
Alignment explanation
Indices: 67969733--67969848 Score: 223
Period size: 52 Copynumber: 2.2 Consensus size: 52
67969723 TTCACACGAT
67969733 TCAATTTTGCAGAATTGAAGCACGATTCACACGGGTAGACCACACGGCCGTG
1 TCAATTTTGCAGAATTGAAGCACGATTCACACGGGTAGACCACACGGCCGTG
67969785 TCAATTTTGCAGAATTGAAGCACGATTCACACGGGTAGACCACACGGCCGTG
1 TCAATTTTGCAGAATTGAAGCACGATTCACACGGGTAGACCACACGGCCGTG
*
67969837 TCAATTTGGCAG
1 TCAATTTTGCAG
67969849 GCTCGAACAC
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 63 1.00
ACGTcount: A:0.28, C:0.24, G:0.25, T:0.22
Consensus pattern (52 bp):
TCAATTTTGCAGAATTGAAGCACGATTCACACGGGTAGACCACACGGCCGTG
Found at i:67980509 original size:8 final size:8
Alignment explanation
Indices: 67980496--67980524 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
67980486 TTATGTTTAG
67980496 TATATTAT
1 TATATTAT
67980504 TATATTAT
1 TATATTAT
67980512 TATATTAT
1 TATATTAT
67980520 TATAT
1 TATAT
67980525 AATAAAGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATATTAT
Found at i:67984808 original size:8 final size:8
Alignment explanation
Indices: 67984795--67984823 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
67984785 TTATGTTTAG
67984795 TATATTAT
1 TATATTAT
67984803 TATATTAT
1 TATATTAT
67984811 TATATTAT
1 TATATTAT
67984819 TATAT
1 TATAT
67984824 AATAAAGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATATTAT
Found at i:67988952 original size:55 final size:55
Alignment explanation
Indices: 67988824--67988952 Score: 145
Period size: 55 Copynumber: 2.3 Consensus size: 55
67988814 CAATCTTGCC
* ** * *
67988824 AAATCAACACGGGCGTGTAACACGCTCGTACCCACTACCCGTGGTCGAAACTATCA
1 AAAT-AACACCGGCGTGCGACACGCCCGTACCCACTACCCGTGGTCAAAACTATCA
* * *
67988880 AAATTACA-CGAGTGTGCGACACGCCCGT-CCCTACTACCCGTGGTCAAAACTGTCA
1 AAATAACACCG-GCGTGCGACACGCCCGTACCC-ACTACCCGTGGTCAAAACTATCA
67988935 AAATAACACCGGCGTGCG
1 AAATAACACCGGCGTGCG
67988953 CATATGTACA
Statistics
Matches: 60, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
54 4 0.07
55 50 0.83
56 6 0.10
ACGTcount: A:0.29, C:0.32, G:0.21, T:0.18
Consensus pattern (55 bp):
AAATAACACCGGCGTGCGACACGCCCGTACCCACTACCCGTGGTCAAAACTATCA
Found at i:67989463 original size:17 final size:18
Alignment explanation
Indices: 67989428--67989466 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
67989418 TTTTTGAATA
* *
67989428 ATTTTATTTATTATTTTT
1 ATTTTACTTATTATCTTT
67989446 ATTTTACTT-TTATCTTT
1 ATTTTACTTATTATCTTT
67989463 ATTT
1 ATTT
67989467 ATTTTTTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (18 bp):
ATTTTACTTATTATCTTT
Found at i:68001788 original size:24 final size:23
Alignment explanation
Indices: 68001722--68001788 Score: 82
Period size: 22 Copynumber: 2.8 Consensus size: 23
68001712 AAAAATTATT
*
68001722 TAAATTAGGGTTAATGGTTTTTAAA
1 TAAATTAGGGTT-A-GGGTTTTAAA
*
68001747 TAAATTA-AGTTAGGGTTTTAAA
1 TAAATTAGGGTTAGGGTTTTAAA
68001769 TAAATTAGGGCTTAGGGTTT
1 TAAATTAGGG-TTAGGGTTT
68001789 ATGGTTTTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
22 16 0.43
23 2 0.05
24 12 0.32
25 7 0.19
ACGTcount: A:0.34, C:0.01, G:0.22, T:0.42
Consensus pattern (23 bp):
TAAATTAGGGTTAGGGTTTTAAA
Found at i:68001834 original size:34 final size:33
Alignment explanation
Indices: 68001780--68001843 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 33
68001770 AAATTAGGGC
*
68001780 TTAGGGTTTATGGTTTTAAATAGATTAAGTAAA
1 TTAGGGTTTATGGTTTTAAATAAATTAAGTAAA
68001813 TTAGGGTTCTA-GGATTTTAAATAAATTAAGT
1 TTAGGGTT-TATGG-TTTTAAATAAATTAAGT
68001844 TACTATTTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
33 10 0.36
34 18 0.64
ACGTcount: A:0.36, C:0.02, G:0.20, T:0.42
Consensus pattern (33 bp):
TTAGGGTTTATGGTTTTAAATAAATTAAGTAAA
Found at i:68001934 original size:100 final size:100
Alignment explanation
Indices: 68001822--68002004 Score: 278
Period size: 100 Copynumber: 1.8 Consensus size: 100
68001812 ATTAGGGTTC
* * ** *
68001822 TAGGATTTTAAATAAATTAAGTTACTATTTTAAATAAATTAAATTAGGGTTTAG-GATTTATTAA
1 TAGGATTTTAAATAAATTAAGTTACGATTTAAAATAAATTAAATTAGCATTTCGAG-TTTATTAA
*
68001886 ATTAGGGTTTATATTTTTTAAATAGATTAAGTAAGT
65 ATTAAGGTTTATATTTTTTAAATAGATTAAGTAAGT
* *
68001922 TAGGATTTTAAATAAATTAAGTTAGGGTTTAAAATAAATTAAATTAGCATTTCGAGTTTATTAAA
1 TAGGATTTTAAATAAATTAAGTTACGATTTAAAATAAATTAAATTAGCATTTCGAGTTTATTAAA
68001987 TTAAGGTTTATATTTTTT
66 TTAAGGTTTATATTTTTT
68002005 GTTTAAAATT
Statistics
Matches: 74, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
100 73 0.99
101 1 0.01
ACGTcount: A:0.39, C:0.02, G:0.14, T:0.45
Consensus pattern (100 bp):
TAGGATTTTAAATAAATTAAGTTACGATTTAAAATAAATTAAATTAGCATTTCGAGTTTATTAAA
TTAAGGTTTATATTTTTTAAATAGATTAAGTAAGT
Found at i:68001945 original size:22 final size:22
Alignment explanation
Indices: 68001917--68001973 Score: 78
Period size: 22 Copynumber: 2.6 Consensus size: 22
68001907 ATAGATTAAG
*
68001917 TAAGTTAGGATTTTAAATAAAT
1 TAAGTTAGGATTTAAAATAAAT
*
68001939 TAAGTTAGGGTTTAAAATAAAT
1 TAAGTTAGGATTTAAAATAAAT
* *
68001961 TAAATTAGCATTT
1 TAAGTTAGGATTT
68001974 CGAGTTTATT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.44, C:0.02, G:0.14, T:0.40
Consensus pattern (22 bp):
TAAGTTAGGATTTAAAATAAAT
Found at i:68002080 original size:28 final size:29
Alignment explanation
Indices: 68002007--68002089 Score: 105
Period size: 28 Copynumber: 2.9 Consensus size: 29
68001997 TATTTTTTGT
*
68002007 TTAAAATTAATTAAATTAGGGTTCTAAGAT
1 TTAAAATTAATTAAATTAGGGTT-TAAGAG
* * * *
68002037 TTTAAATAAATTAAATTAGGGTTT-GGGG
1 TTAAAATTAATTAAATTAGGGTTTAAGAG
68002065 TTAAAATTAATTAAATTAGGGTTTA
1 TTAAAATTAATTAAATTAGGGTTTA
68002090 GTTTTTTTAA
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
28 23 0.51
29 1 0.02
30 21 0.47
ACGTcount: A:0.41, C:0.01, G:0.17, T:0.41
Consensus pattern (29 bp):
TTAAAATTAATTAAATTAGGGTTTAAGAG
Found at i:68002301 original size:125 final size:126
Alignment explanation
Indices: 68002146--68002390 Score: 377
Period size: 125 Copynumber: 2.0 Consensus size: 126
68002136 ATTTTTACCA
**
68002146 TGAAAAAATAATTTTGAAAAGACGTTTCTGAACAAATAGTGTCAAAAATGCTGT-AAGCAGGATG
1 TGAAAAAATAATTTTGAAAAGACGTTTCTGAACAAATAGTGTCAAAAACACT-TCAAGCAGGATG
* * * *
68002210 CACTGTCAGCAAAAATAC-AGAAACAGCTCCCATGTGGACGCTCTTTTGCTATAGTTGTTCC
65 CAATGTCAGCAAAAATACTAAAAAAAGCTCCCACGTGGACGCTCTTTTGCTATAGTTGTTCC
*
68002271 TGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACACTTCAAGCAGGATGC
1 TGAAAAAATAATTTTGAAAAGACGTTTCTGAACAAATAGTGTCAAAAACACTTCAAGCAGGATGC
* * *
68002336 AATGTCAGCAAAATTTCTAAAAAAAGCTCCCACGTGGACGCTCTTTTTCTATAGT
66 AATGTCAGCAAAAATACTAAAAAAAGCTCCCACGTGGACGCTCTTTTGCTATAGT
68002391 AGCTCATACT
Statistics
Matches: 108, Mismatches: 10, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
124 1 0.01
125 74 0.69
126 33 0.31
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (126 bp):
TGAAAAAATAATTTTGAAAAGACGTTTCTGAACAAATAGTGTCAAAAACACTTCAAGCAGGATGC
AATGTCAGCAAAAATACTAAAAAAAGCTCCCACGTGGACGCTCTTTTGCTATAGTTGTTCC
Found at i:68006019 original size:30 final size:30
Alignment explanation
Indices: 68005985--68006050 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 30
68005975 GTTGAGGCAT
* * *
68005985 TGGGCCATGTGATTATGTGGGTGTTGTTGA
1 TGGGCCAGGTGATTATGTGGGCGCTGTTGA
* *
68006015 TGGGCCCGGTGATTGTGTGGGCGCTGTTGA
1 TGGGCCAGGTGATTATGTGGGCGCTGTTGA
68006045 TGGGCC
1 TGGGCC
68006051 TGTCCCATCA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.09, C:0.14, G:0.44, T:0.33
Consensus pattern (30 bp):
TGGGCCAGGTGATTATGTGGGCGCTGTTGA
Found at i:68006558 original size:7 final size:7
Alignment explanation
Indices: 68006548--68006578 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
68006538 TTATATACAT
68006548 AATACTA
1 AATACTA
68006555 AATACTA
1 AATACTA
68006562 AATACTA
1 AATACTA
*
68006569 AATATTA
1 AATACTA
68006576 AAT
1 AAT
68006579 GAAACGACTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.58, C:0.10, G:0.00, T:0.32
Consensus pattern (7 bp):
AATACTA
Found at i:68006614 original size:15 final size:15
Alignment explanation
Indices: 68006591--68006622 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
68006581 AACGACTATT
68006591 TTATGTATATATATA
1 TTATGTATATATATA
68006606 TTAT-T-TATATATA
1 TTATGTATATATATA
68006619 TTAT
1 TTAT
68006623 TTAATACTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 12 0.71
14 1 0.06
15 4 0.24
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (15 bp):
TTATGTATATATATA
Found at i:68006616 original size:13 final size:13
Alignment explanation
Indices: 68006598--68006625 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
68006588 ATTTTATGTA
68006598 TATATATATTATT
1 TATATATATTATT
68006611 TATATATATTATT
1 TATATATATTATT
68006624 TA
1 TA
68006626 ATACTTACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (13 bp):
TATATATATTATT
Found at i:68007607 original size:54 final size:51
Alignment explanation
Indices: 68007525--68007640 Score: 178
Period size: 54 Copynumber: 2.2 Consensus size: 51
68007515 AAAAATTTAT
*
68007525 AAAATAAAAATTAATTAAAATTACATAAATGAAAAAAATATTAAATAATATTCA
1 AAAATTAAAATTAATTAAAATTACATAAATG--AAAAATATTAAA-AATATTCA
68007579 AAAATTAAAATTAATTAAAATTACATAAATGAAAAATATTAAAAATATTCA
1 AAAATTAAAATTAATTAAAATTACATAAATGAAAAATATTAAAAATATTCA
**
68007630 AAGTTTAAAAT
1 AAAATTAAAAT
68007641 AAATCGTTAC
Statistics
Matches: 59, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
51 17 0.29
52 12 0.20
54 30 0.51
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (51 bp):
AAAATTAAAATTAATTAAAATTACATAAATGAAAAATATTAAAAATATTCA
Found at i:68007620 original size:24 final size:24
Alignment explanation
Indices: 68007538--68007622 Score: 80
Period size: 25 Copynumber: 3.3 Consensus size: 24
68007528 ATAAAAATTA
68007538 ATTAAAATTACATAAATGAAAAAAAT
1 ATTAAAATTACATAAATG--AAAAAT
* * * *
68007564 ATTAAATAATATTCAAAAATTAAAATT
1 ATT-AA-AAT-TACATAAATGAAAAAT
68007591 AATTAAAATTACATAAATGAAAAAT
1 -ATTAAAATTACATAAATGAAAAAT
68007616 ATTAAAA
1 ATTAAAA
68007623 ATATTCAAAG
Statistics
Matches: 47, Mismatches: 8, Indels: 10
0.72 0.12 0.15
Matches are distributed among these distances:
24 7 0.15
25 12 0.26
26 6 0.13
27 9 0.19
28 6 0.13
29 7 0.15
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.31
Consensus pattern (24 bp):
ATTAAAATTACATAAATGAAAAAT
Found at i:68008398 original size:32 final size:32
Alignment explanation
Indices: 68008362--68008425 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
68008352 TTTAATCACT
68008362 AAAATTCATAATTTTCTTTTATAATGCTGTCA
1 AAAATTCATAATTTTCTTTTATAATGCTGTCA
*
68008394 AAAATTTATAATTTTCTTTTATAATGCTGTCA
1 AAAATTCATAATTTTCTTTTATAATGCTGTCA
68008426 TTTTCTAATA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.34, C:0.11, G:0.06, T:0.48
Consensus pattern (32 bp):
AAAATTCATAATTTTCTTTTATAATGCTGTCA
Found at i:68009892 original size:23 final size:23
Alignment explanation
Indices: 68009861--68009906 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
68009851 ATTAAAAAAG
68009861 TTAACGGGATTATGTGGAATTTT
1 TTAACGGGATTATGTGGAATTTT
*
68009884 TTAATGGGATTATGTGGAATTTT
1 TTAACGGGATTATGTGGAATTTT
68009907 GTATGTGGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.26, C:0.02, G:0.26, T:0.46
Consensus pattern (23 bp):
TTAACGGGATTATGTGGAATTTT
Found at i:68011208 original size:32 final size:32
Alignment explanation
Indices: 68011172--68011268 Score: 176
Period size: 32 Copynumber: 3.0 Consensus size: 32
68011162 TGTATGCATT
*
68011172 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGAATGATGGGCA
68011204 TTAGCATTTTAATAGTTAATGAATGATGGGCA
1 TTAGCATTTTAATAGTTAATGAATGATGGGCA
*
68011236 TTAGCATTTTAATAATTAATGAATGATGGGCA
1 TTAGCATTTTAATAGTTAATGAATGATGGGCA
68011268 T
1 T
68011269 GATAAGCATT
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 63 1.00
ACGTcount: A:0.34, C:0.06, G:0.22, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGAATGATGGGCA
Found at i:68023137 original size:16 final size:17
Alignment explanation
Indices: 68023106--68023140 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
68023096 AACTACTTTG
68023106 TACACTACACAAATATA
1 TACACTACACAAATATA
*
68023123 TACAC-ACACATATATA
1 TACACTACACAAATATA
68023139 TA
1 TA
68023141 TAAATAATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (17 bp):
TACACTACACAAATATA
Found at i:68023191 original size:20 final size:21
Alignment explanation
Indices: 68023138--68023239 Score: 93
Period size: 21 Copynumber: 4.8 Consensus size: 21
68023128 ACACATATAT
* *
68023138 ATATAAATAATAGTATTAGAA
1 ATATACATAATAATATTAGAA
68023159 ATATACA-ATATAATATTAGAA
1 ATATACATA-ATAATATTAGAA
*
68023180 ATATACAT-ATAATAGTATAAAA
1 ATATACATAATAATA-T-TAGAA
*
68023202 ATATATAACTAATAATATT-GAA
1 ATATA-CA-TAATAATATTAGAA
*
68023224 ATATATATAATAATAT
1 ATATACATAATAATAT
68023240 ATAAAAAATA
Statistics
Matches: 68, Mismatches: 6, Indels: 15
0.76 0.07 0.17
Matches are distributed among these distances:
20 16 0.24
21 26 0.38
22 16 0.24
23 2 0.03
24 2 0.03
25 6 0.09
ACGTcount: A:0.57, C:0.03, G:0.05, T:0.35
Consensus pattern (21 bp):
ATATACATAATAATATTAGAA
Found at i:68023206 original size:22 final size:21
Alignment explanation
Indices: 68023144--68023255 Score: 86
Period size: 22 Copynumber: 5.1 Consensus size: 21
68023134 ATATATATAA
68023144 ATAATAGTATTAGAAATATACAAT
1 ATAATA-TA-TAGAAATATAC-AT
68023168 ATAATAT-TAGAAATATACAT
1 ATAATATATAGAAATATACAT
* *
68023188 ATAATAGTATAAAAATATATA-
1 ATAATA-TATAGAAATATACAT
* *
68023209 ACTAATAATATTGAAATATATAT
1 A-TAAT-ATATAGAAATATACAT
*
68023232 AATAATATATAAAAAATATA-AT
1 -ATAATATAT-AGAAATATACAT
68023254 AT
1 AT
68023256 TGAAAACATA
Statistics
Matches: 75, Mismatches: 6, Indels: 17
0.77 0.06 0.17
Matches are distributed among these distances:
20 8 0.11
21 15 0.20
22 32 0.43
23 13 0.17
24 7 0.09
ACGTcount: A:0.58, C:0.03, G:0.04, T:0.35
Consensus pattern (21 bp):
ATAATATATAGAAATATACAT
Found at i:68023225 original size:44 final size:44
Alignment explanation
Indices: 68023134--68023255 Score: 144
Period size: 44 Copynumber: 2.8 Consensus size: 44
68023124 ACACACACAT
* * *
68023134 ATATATATAAATAATAGTATTAGAAATATACAATATAATATTAGAA
1 ATATACAT-AATAATAGTA-TAAAAATATATAATATAATATTAGAA
68023180 ATATACAT-ATAATAGTATAAAAATATATAACTAATAATATT-GAA
1 ATATACATAATAATAGTATAAAAATATATAA-T-ATAATATTAGAA
*
68023224 ATATATATAATAATA-TATAAAAA-ATATAATAT
1 ATATACATAATAATAGTATAAAAATATATAATAT
68023256 TGAAAACATA
Statistics
Matches: 69, Mismatches: 4, Indels: 11
0.82 0.05 0.13
Matches are distributed among these distances:
41 2 0.03
42 1 0.01
43 17 0.25
44 28 0.41
45 14 0.20
46 7 0.10
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.35
Consensus pattern (44 bp):
ATATACATAATAATAGTATAAAAATATATAATATAATATTAGAA
Found at i:68023468 original size:21 final size:20
Alignment explanation
Indices: 68023444--68023494 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
68023434 AAATAGTACT
*
68023444 ATATGTAATATATATACA-TA
1 ATAT-TAATATACATACACTA
68023464 CATATATAATATACATACACTA
1 -ATAT-TAATATACATACACTA
68023486 ATATTAATA
1 ATATTAATA
68023495 ATAATAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 5 0.19
21 20 0.74
22 2 0.07
ACGTcount: A:0.51, C:0.10, G:0.02, T:0.37
Consensus pattern (20 bp):
ATATTAATATACATACACTA
Found at i:68023477 original size:17 final size:16
Alignment explanation
Indices: 68023451--68023482 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
68023441 ACTATATGTA
68023451 ATATATATACATACAT
1 ATATATATACATACAT
68023467 ATATAATATACATACA
1 ATAT-ATATACATACA
68023483 CTAATATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.34
Consensus pattern (16 bp):
ATATATATACATACAT
Found at i:68023498 original size:3 final size:3
Alignment explanation
Indices: 68023484--68023647 Score: 74
Period size: 3 Copynumber: 54.7 Consensus size: 3
68023474 ATACATACAC
* *
68023484 TAA TAT TAA TAA TAA TAA TAA -AA TTAGA -AA TAA TAA TAA TTAG TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA -TA-A TAA TAA TAA TAA -TAA TAA
* * * ** * *
68023530 TAA TAA TACG TTA GAA -AA TAA TTAA T-A TGT TAA TAA AAA TAA TAG
1 TAA TAA TA-A TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA
* * *
68023575 TAA TGAA -AA TAA TAC TAA CAG TAA TAA TAA -AGA TAA TAA TAGA -AA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TA-A TAA
* *
68023620 TAA -AA TAA TAG TAA TAA TAT TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
68023648 TGTAAAAAAA
Statistics
Matches: 119, Mismatches: 26, Indels: 32
0.67 0.15 0.18
Matches are distributed among these distances:
2 13 0.11
3 94 0.79
4 11 0.09
5 1 0.01
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:68023526 original size:16 final size:16
Alignment explanation
Indices: 68023497--68023556 Score: 68
Period size: 16 Copynumber: 3.6 Consensus size: 16
68023487 TATTAATAAT
68023497 AATAATAA-AATTAGA
1 AATAATAATAATTAGA
*
68023512 AATAATAATAATTAGT
1 AATAATAATAATTAGA
*
68023528 AATAATAATACGTTAGAA
1 AATAATAATA-ATTAG-A
68023546 AATAATTAATA
1 AATAA-TAATA
68023557 TGTTAATAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
15 8 0.21
16 16 0.42
17 4 0.11
18 5 0.13
19 5 0.13
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.32
Consensus pattern (16 bp):
AATAATAATAATTAGA
Found at i:68024235 original size:6 final size:6
Alignment explanation
Indices: 68024219--68024268 Score: 50
Period size: 6 Copynumber: 8.3 Consensus size: 6
68024209 AAGGTAAAAA
* *
68024219 TTTACTT TTTATT TTTATT TTTA-T TTT-TT TGTATTT TTTATT TATATT
1 TTTA-TT TTTATT TTTATT TTTATT TTTATT TTTA-TT TTTATT TTTATT
68024267 TT
1 TT
68024269 AATATGTTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
5 7 0.19
6 20 0.56
7 9 0.25
ACGTcount: A:0.16, C:0.02, G:0.02, T:0.80
Consensus pattern (6 bp):
TTTATT
Found at i:68040087 original size:694 final size:693
Alignment explanation
Indices: 68038742--68040119 Score: 2531
Period size: 694 Copynumber: 2.0 Consensus size: 693
68038732 TCAAACCTAA
* *
68038742 TAAGGGAATCCATAGATCGAGTTAATGGAACACTAGGGGTTTTAATTAGAAAGAGATTTCAATTA
1 TAAGGGAATCCATAGATCGAGTTAATGCAACACTAAGGGTTTTAATTAGAAAGAGATTTCAATTA
*
68038807 ATCAACCTAGTGTTAGACATTGTTAGTCTCGAGAGAGATAATAATATAAATTAAGGATTTCTACG
66 ATCAACCTAGGGTTAGACATTGTTAGTCTCGAGAGAGATAATAATATAAATTAAGGATTTCTACG
* *
68038872 GATCGAGTCAAGTGAATAAACTGTCTAATTCAGAGTCAAATAACAAGTGAAGTCTAGGTGGACTT
131 GATCAAGTCAAGTGAATAAACTATCTAATTCAGAGTCAAATAACAAGTGAAGTCTAGGTGGACTT
** *
68038937 TCCCTTGGGGTATTGTCTGAATAAACCAGTTTTCCTAAAATTATTTCCCCAATTTACTTCCTGTG
196 TCCCTTGGGGTATTGTCCAAATAAACCAGTTTTCCAAAAATTATTTCCCCAATTTACTTCCTGTG
68039002 CATTCTTAGTTTAGTTAATTAGTTTAGATAAAGCAAATCCCCTTATTTTTAGGCTAAATAATAAA
261 CATTCTTAGTTTAGTTAATTAGTTTAGATAAAGCAAATCCCCTTATTTTTAGGCTAAATAATAAA
* * *
68039067 AAGAAGGTGAATACTAGTACTTTTAGTTCCTGTGGGTTCGACATTCCGGTCTTGCTATAAGCTAT
326 AAGAAGGTGAATACTAGTACTTTTAGTTCCTATGGGTTCGACATTCCAGTCTTGCTATAAGCTAG
68039132 ACTACTGTTCGATAGGTGCGCTTGCCTTTATCGTGATAATAGTTAGTTTTCATGTACGATCAATC
391 ACTACTGTTCGATAGGTGCGCTTGCCTTTATCGTGATAATAGTTAGTTTTCATGTACGATCAATC
68039197 ATAAATATAAAACTTATCATGCACATTACCATTTGTATCGAAGTTTAGTTGGAATGCTTCAGTAT
456 ATAAATATAAAACTTATCATGCACATTACCATTTGTATCGAAGTTTAGTTGGAATGCTTCAGTAT
68039262 ATGTGCATTACACGTCCTGATTTATCGTTTTGTGTTAACAAACTCAGTCAGTACATGAACTCACC
521 ATGTGCATTACACGTCCTGATTTATCGTTTTGTGTTAACAAACTCAGTCAGTACATGAACTCACC
* *
68039327 CAGTGACACTCATTGGAAGGCTGTTAAACGAGTGTTATGGTATCTAATTAAGCCTCATCTGTGAC
586 CAGTGACACTCATTGGAAGGCTGTTAAACGAGTGTTACGGTATCTAATTAAGCCTCATCCGTGAC
68039392 ACTTATCAAAAGGTCAGTTTAAGTTAGTTTGTTATTCTGATGC
651 ACTTATCAAAAGGTCAGTTTAAGTTAGTTTGTTATTCTGATGC
68039435 TAAGGGAATCCATAGATCGAGTTAATGCAACACTAAGGGTTTTAATTAGAAAGAGATTTCAATTA
1 TAAGGGAATCCATAGATCGAGTTAATGCAACACTAAGGGTTTTAATTAGAAAGAGATTTCAATTA
* *
68039500 ATCAACCTAGGGTTAGACATTGTTAGTCTTGAGAGAGATAATAATATAAATTAGGGATTTCTACG
66 ATCAACCTAGGGTTAGACATTGTTAGTCTCGAGAGAGATAATAATATAAATTAAGGATTTCTACG
68039565 GATCAAGTCAAGTGAATAAACTATCTAATTCAGAGTCAAATAACAAGTGAAGTCTAGGTGGACTT
131 GATCAAGTCAAGTGAATAAACTATCTAATTCAGAGTCAAATAACAAGTGAAGTCTAGGTGGACTT
* *
68039630 TCCCTTGGGGTATTGTCCAAATCAATCAGTTTTCCAAAAATTTATTTCCCCAATTTACTTCCTGT
196 TCCCTTGGGGTATTGTCCAAATAAACCAGTTTTCCAAAAA-TTATTTCCCCAATTTACTTCCTGT
* * *
68039695 GCATTCTTAGTTTAGTTAATTAGTTTAGATAAAGTAAATCCCCTTATTTTTAGGCTAGATAGTAA
260 GCATTCTTAGTTTAGTTAATTAGTTTAGATAAAGCAAATCCCCTTATTTTTAGGCTAAATAATAA
68039760 AAAGAAGGTGAATACTAGTACTTTTAGTTCCTATGGGTTCGACATTCCAGTCTTGCTATAAGCTA
325 AAAGAAGGTGAATACTAGTACTTTTAGTTCCTATGGGTTCGACATTCCAGTCTTGCTATAAGCTA
68039825 GACTACTGTTCGATAGGTGCGCTTGCCTTTATCGTGATAATAGTTAGTTTTCATGTACGATCAAT
390 GACTACTGTTCGATAGGTGCGCTTGCCTTTATCGTGATAATAGTTAGTTTTCATGTACGATCAAT
*
68039890 CATAAATATAAAACTTATCATGCACATTACCATTTGTATCGAATTTTAGTTGGAATGCTTCAGTA
455 CATAAATATAAAACTTATCATGCACATTACCATTTGTATCGAAGTTTAGTTGGAATGCTTCAGTA
68039955 TATGTGCATTACACGTCCTGATTTATCGTTTTGTGTTAACAAACTCAGTCAGTACATGAACTCAC
520 TATGTGCATTACACGTCCTGATTTATCGTTTTGTGTTAACAAACTCAGTCAGTACATGAACTCAC
** *
68040020 CCAGTGACACTCATTGGAAGGCTGTTAAACGAGTGTTACGGTATCTAATTGGGCCTCGTCCGTGA
585 CCAGTGACACTCATTGGAAGGCTGTTAAACGAGTGTTACGGTATCTAATTAAGCCTCATCCGTGA
68040085 CACTTATCAAAAGGTCAGTTTAAGTTAGTTTGTTA
650 CACTTATCAAAAGGTCAGTTTAAGTTAGTTTGTTA
68040120 GCCGATCAAC
Statistics
Matches: 660, Mismatches: 24, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
693 223 0.34
694 437 0.66
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (693 bp):
TAAGGGAATCCATAGATCGAGTTAATGCAACACTAAGGGTTTTAATTAGAAAGAGATTTCAATTA
ATCAACCTAGGGTTAGACATTGTTAGTCTCGAGAGAGATAATAATATAAATTAAGGATTTCTACG
GATCAAGTCAAGTGAATAAACTATCTAATTCAGAGTCAAATAACAAGTGAAGTCTAGGTGGACTT
TCCCTTGGGGTATTGTCCAAATAAACCAGTTTTCCAAAAATTATTTCCCCAATTTACTTCCTGTG
CATTCTTAGTTTAGTTAATTAGTTTAGATAAAGCAAATCCCCTTATTTTTAGGCTAAATAATAAA
AAGAAGGTGAATACTAGTACTTTTAGTTCCTATGGGTTCGACATTCCAGTCTTGCTATAAGCTAG
ACTACTGTTCGATAGGTGCGCTTGCCTTTATCGTGATAATAGTTAGTTTTCATGTACGATCAATC
ATAAATATAAAACTTATCATGCACATTACCATTTGTATCGAAGTTTAGTTGGAATGCTTCAGTAT
ATGTGCATTACACGTCCTGATTTATCGTTTTGTGTTAACAAACTCAGTCAGTACATGAACTCACC
CAGTGACACTCATTGGAAGGCTGTTAAACGAGTGTTACGGTATCTAATTAAGCCTCATCCGTGAC
ACTTATCAAAAGGTCAGTTTAAGTTAGTTTGTTATTCTGATGC
Found at i:68050544 original size:9 final size:9
Alignment explanation
Indices: 68050530--68050561 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
68050520 TTTGTCATTC
68050530 GAATTATTT
1 GAATTATTT
68050539 GAATTATTT
1 GAATTATTT
*
68050548 GAGTTATTT
1 GAATTATTT
68050557 GAATT
1 GAATT
68050562 GTAAAATTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.16, T:0.53
Consensus pattern (9 bp):
GAATTATTT
Found at i:68053053 original size:14 final size:14
Alignment explanation
Indices: 68053036--68053088 Score: 74
Period size: 14 Copynumber: 3.8 Consensus size: 14
68053026 AGGATTGAGG
68053036 ATTGAAAATTTGAA
1 ATTGAAAATTTGAA
68053050 ATTG-AAATTTGAAA
1 ATTGAAAATTTG-AA
68053064 ATT-AAAATTTGAA
1 ATTGAAAATTTGAA
68053077 GATTGAAAATTT
1 -ATTGAAAATTT
68053089 AGGAAGGAAG
Statistics
Matches: 35, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
13 9 0.26
14 19 0.54
15 7 0.20
ACGTcount: A:0.49, C:0.00, G:0.13, T:0.38
Consensus pattern (14 bp):
ATTGAAAATTTGAA
Found at i:68053053 original size:21 final size:20
Alignment explanation
Indices: 68053029--68053089 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 20
68053019 AAAATTGAGG
*
68053029 ATTGAGGATTGAAAATTTGAA
1 ATTGA-GATTGAAAATTTAAA
*
68053050 ATTGAAATTTGAAAA-TTAAA
1 ATTGAGA-TTGAAAATTTAAA
68053070 ATTTGAAGATTGAAAATTTA
1 A-TTG-AGATTGAAAATTTA
68053090 GGAAGGAAGA
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
20 6 0.18
21 22 0.67
22 5 0.15
ACGTcount: A:0.48, C:0.00, G:0.16, T:0.36
Consensus pattern (20 bp):
ATTGAGATTGAAAATTTAAA
Found at i:68053082 original size:7 final size:7
Alignment explanation
Indices: 68053036--68053087 Score: 54
Period size: 7 Copynumber: 7.4 Consensus size: 7
68053026 AGGATTGAGG
68053036 ATTGAAA
1 ATTGAAA
68053043 ATTTG-AA
1 A-TTGAAA
68053050 ATTGAAA
1 ATTGAAA
*
68053057 TTTGAAA
1 ATTGAAA
68053064 ATT-AAA
1 ATTGAAA
*
68053070 ATTTGAAG
1 A-TTGAAA
68053078 ATTGAAA
1 ATTGAAA
68053085 ATT
1 ATT
68053088 TAGGAAGGAA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
6 7 0.19
7 24 0.65
8 6 0.16
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (7 bp):
ATTGAAA
Found at i:68054242 original size:43 final size:42
Alignment explanation
Indices: 68054195--68054570 Score: 219
Period size: 43 Copynumber: 8.7 Consensus size: 42
68054185 TCATCACTGG
* * *
68054195 TAGCGGCGTTTTCCGTTCAAACGCCGCTAAAAGTAGATACCTT
1 TAGCGGCGTTTTCC-ATCAAACGCCGCTAAAAGTACAGACCTT
* * *
68054238 TAGCGGCGCTTTACCAT-AAACGCCGCTAATAGTATAGACCTT
1 TAGCGGCG-TTTTCCATCAAACGCCGCTAAAAGTACAGACCTT
** * * * *
68054280 TAGCGGCGCTTAGCAAACAAACGCCGCTAAAAGCACATACCTT
1 TAGCGGCG-TTTTCCATCAAACGCCGCTAAAAGTACAGACCTT
* * **
68054323 TAGCGGCGTTTTACCCA-CAAACGCCACTAAAGGTGTAGACCTT
1 TAGCGGCGTTTT--CCATCAAACGCCGCTAAAAGTACAGACCTT
* *
68054366 TAGCGGCGTTTGT--TTGCAAAGTGCCGCTAAAAGTACAGACCTT
1 TAGCGGCGTTT-TCCAT-CAAA-CGCCGCTAAAAGTACAGACCTT
* * * ** * *
68054409 TAGCGGAGCTTTTGCCCA-AAAAAGCCGCTAAATTTACAGATCTA
1 TAGCGGCG-TTTT--CCATCAAACGCCGCTAAAAGTACAGACCTT
** * *
68054453 TAGCGGCGCTTACACCA-AAAACGCCGCCAAAAGTACAGACCTTT
1 TAGCGGCG-TT-TTCCATCAAACGCCGCTAAAAGTACAGACC-TT
* * * *
68054497 TAGCGGCGCTTTCTCCA-CAAATGCCGCCAAAAGTAGAGTCCTT
1 TAGCGGCG-TTT-TCCATCAAACGCCGCTAAAAGTACAGACCTT
* *
68054540 TAGCGGCACTTTCCCCA-CAAACGCCGCTAAA
1 TAGCGGC-GTTT-TCCATCAAACGCCGCTAAA
68054571 TTTATAGATT
Statistics
Matches: 261, Mismatches: 55, Indels: 34
0.75 0.16 0.10
Matches are distributed among these distances:
42 41 0.16
43 144 0.55
44 73 0.28
45 3 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.23
Consensus pattern (42 bp):
TAGCGGCGTTTTCCATCAAACGCCGCTAAAAGTACAGACCTT
Found at i:68054544 original size:87 final size:85
Alignment explanation
Indices: 68054213--68054570 Score: 294
Period size: 87 Copynumber: 4.2 Consensus size: 85
68054203 TTTTCCGTTC
* * * * * *
68054213 AAACGCCGCTAAAAGTAGATACCTTTAGCGGCGCTTTACCATAAACGCCGCTAATAGTATAGACC
1 AAACGCCGCTAAAAGTACAGACCTTTAGCGGCGCTTTTCCACAAACGCCGCTAAAAGTAGAGACC
68054278 TTTAGCGGCGCTTAGCA--AA
66 TTTAGCGGCGCTTA-CACCAA
* * * *
68054297 CAAACGCCGCTAAAAGCACATACCTTTAGCGGCG-TTTTACCCACAAACGCCACTAAAGGT-GTA
1 -AAACGCCGCTAAAAGTACAGACCTTTAGCGGCGCTTTT--CCACAAACGCCGCTAAAAGTAG-A
* ****
68054360 GACCTTTAGCGGCGTTTGTTTGC-A
62 GACCTTTAGCGGCGCTT-ACACCAA
** * * * ** *
68054384 AAGTGCCGCTAAAAGTACAGACCTTTAGCGGAGCTTTTGCCCAAAAAAGCCGCTAAATTTACAGA
1 AAACGCCGCTAAAAGTACAGACCTTTAGCGGCGCTTTT--CCACAAACGCCGCTAAAAGTAGAGA
* *
68054449 TCTATAGCGGCGCTTACACCAA
64 CCTTTAGCGGCGCTTACACCAA
* * * *
68054471 AAACGCCGCCAAAAGTACAGACCTTTTAGCGGCGCTTTCTCCACAAATGCCGCCAAAAGTAGAGT
1 AAACGCCGCTAAAAGTACAGACC-TTTAGCGGCGCTTT-TCCACAAACGCCGCTAAAAGTAGAGA
* * * *
68054536 CCTTTAGCGGCACTTTCCCCAC
64 CCTTTAGCGGCGCTTACACCAA
68054558 AAACGCCGCTAAA
1 AAACGCCGCTAAA
68054571 TTTATAGATT
Statistics
Matches: 213, Mismatches: 49, Indels: 20
0.76 0.17 0.07
Matches are distributed among these distances:
84 3 0.01
85 31 0.15
86 62 0.29
87 103 0.48
88 13 0.06
89 1 0.00
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.22
Consensus pattern (85 bp):
AAACGCCGCTAAAAGTACAGACCTTTAGCGGCGCTTTTCCACAAACGCCGCTAAAAGTAGAGACC
TTTAGCGGCGCTTACACCAA
Found at i:68060520 original size:9 final size:9
Alignment explanation
Indices: 68060506--68060642 Score: 112
Period size: 9 Copynumber: 14.6 Consensus size: 9
68060496 ATGTATTAGT
68060506 TAAGTTATG
1 TAAGTTATG
68060515 TAAGTTATG
1 TAAGTTATG
*
68060524 TGAGTTATG
1 TAAGTTATG
*
68060533 TAAGTTGTTATA
1 TAA---GTTATG
*
68060545 TACGTTATG
1 TAAGTTATG
* *
68060554 TGAGTTATA
1 TAAGTTATG
*
68060563 TAAATTATG
1 TAAGTTATG
68060572 TAAGTTATG
1 TAAGTTATG
68060581 TAAGTTATG
1 TAAGTTATG
*
68060590 TAGGTTGTTATG
1 TA---AGTTATG
*
68060602 TAAATTATG
1 TAAGTTATG
*
68060611 TAAGTTACG
1 TAAGTTATG
*
68060620 TGAGTTATG
1 TAAGTTATG
* *
68060629 TAACTTATT
1 TAAGTTATG
68060638 TAAGT
1 TAAGT
68060643 AATGATCAAT
Statistics
Matches: 99, Mismatches: 23, Indels: 12
0.74 0.17 0.09
Matches are distributed among these distances:
9 84 0.85
12 15 0.15
ACGTcount: A:0.31, C:0.02, G:0.21, T:0.45
Consensus pattern (9 bp):
TAAGTTATG
Found at i:68060600 original size:48 final size:48
Alignment explanation
Indices: 68060506--68060637 Score: 149
Period size: 48 Copynumber: 2.8 Consensus size: 48
68060496 ATGTATTAGT
* *
68060506 TAAGTTATGTAAGTTATGTGAGTTATGTAAGTTGTTATATACGTTATG
1 TAAGTTATGTAAGTTATGTGAGTTATGTAAGTTATTAGATACGTTATG
* * * * * *
68060554 TGAGTTATATAAATTATGTAAGTTATGTAAGTTATGTAGGT-TGTTATG
1 TAAGTTATGTAAGTTATGTGAGTTATGTAAGTTAT-TAGATACGTTATG
* * *
68060602 TAAATTATGTAAGTTACGTGAGTTATGTAACTTATT
1 TAAGTTATGTAAGTTATGTGAGTTATGTAAGTTATT
68060638 TAAGTAATGA
Statistics
Matches: 68, Mismatches: 15, Indels: 3
0.79 0.17 0.03
Matches are distributed among these distances:
47 1 0.01
48 64 0.94
49 3 0.04
ACGTcount: A:0.31, C:0.02, G:0.21, T:0.45
Consensus pattern (48 bp):
TAAGTTATGTAAGTTATGTGAGTTATGTAAGTTATTAGATACGTTATG
Found at i:68060628 original size:57 final size:57
Alignment explanation
Indices: 68060506--68060642 Score: 166
Period size: 57 Copynumber: 2.4 Consensus size: 57
68060496 ATGTATTAGT
* ** * *
68060506 TAAGTTATGTAAGTTATGTGAGTTATGTAAGTTGTTATATACGTTATGTGAGTTATA
1 TAAGTTATGTAAGTTATGTAAGTTATGTAAGTTGTTATATAAATTATGTAAGTTACA
* * * *
68060563 TAAATTATGTAAGTTATGTAAGTTATGTAGGTTGTTATGTAAATTATGTAAGTTACG
1 TAAGTTATGTAAGTTATGTAAGTTATGTAAGTTGTTATATAAATTATGTAAGTTACA
* * *
68060620 TGAGTTATGTAACTTATTTAAGT
1 TAAGTTATGTAAGTTATGTAAGT
68060643 AATGATCAAT
Statistics
Matches: 67, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
57 67 1.00
ACGTcount: A:0.31, C:0.02, G:0.21, T:0.45
Consensus pattern (57 bp):
TAAGTTATGTAAGTTATGTAAGTTATGTAAGTTGTTATATAAATTATGTAAGTTACA
Found at i:68064033 original size:21 final size:21
Alignment explanation
Indices: 68063991--68064063 Score: 58
Period size: 21 Copynumber: 3.4 Consensus size: 21
68063981 ATAAAATCAG
* *
68063991 ACCCTAAACCCTAAATTTTAA
1 ACCCTAAACCCTAAACTATAA
* *
68064012 ACCCTAAACTCTAAGCTATAA
1 ACCCTAAACCCTAAACTATAA
* *
68064033 ACCCCT-AACCTTATAAATATTAA
1 A-CCCTAAACCCTA-AACTA-TAA
68064056 ACCCTAAA
1 ACCCTAAA
68064064 TTCTAGATAC
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
21 23 0.57
22 11 0.28
23 6 0.15
ACGTcount: A:0.44, C:0.29, G:0.01, T:0.26
Consensus pattern (21 bp):
ACCCTAAACCCTAAACTATAA
Found at i:68064536 original size:14 final size:14
Alignment explanation
Indices: 68064519--68064562 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
68064509 TTAACTTATT
*
68064519 CCCTATCCCTTAAA
1 CCCTAACCCTTAAA
*
68064533 CCCTAACCCCT-AA
1 CCCTAACCCTTAAA
68064546 CCACTAACCCTTAAA
1 CC-CTAACCCTTAAA
68064561 CC
1 CC
68064563 TTAATACCGC
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
13 4 0.16
14 17 0.68
15 4 0.16
ACGTcount: A:0.32, C:0.48, G:0.00, T:0.20
Consensus pattern (14 bp):
CCCTAACCCTTAAA
Found at i:68065368 original size:22 final size:21
Alignment explanation
Indices: 68065334--68065378 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 21
68065324 TAAACCACAA
*
68065334 AAACATAAACCATGAACCCTT
1 AAACATAAACCATAAACCCTT
*
68065355 AAACCTAAACCCATAAACCCTT
1 AAACATAAA-CCATAAACCCTT
68065377 AA
1 AA
68065379 TACCGCTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.49, C:0.31, G:0.02, T:0.18
Consensus pattern (21 bp):
AAACATAAACCATAAACCCTT
Found at i:68065495 original size:35 final size:35
Alignment explanation
Indices: 68065430--68065511 Score: 94
Period size: 35 Copynumber: 2.3 Consensus size: 35
68065420 CAAAATAACA
** *
68065430 AAACCCTAAACCATAAAATTAACATTTTAAATCTT
1 AAACCCTAAACCATAAAATTAACACCTTAAATATT
**
68065465 AAACCCTAAACCATAGACCTTAA-ACCTTAAATATT
1 AAACCCTAAACCATA-AAATTAACACCTTAAATATT
*
68065500 AAACCGTAAACC
1 AAACCCTAAACC
68065512 CAAAAAATAA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
35 35 0.88
36 5 0.12
ACGTcount: A:0.48, C:0.24, G:0.02, T:0.26
Consensus pattern (35 bp):
AAACCCTAAACCATAAAATTAACACCTTAAATATT
Found at i:68065632 original size:41 final size:41
Alignment explanation
Indices: 68065565--68065927 Score: 467
Period size: 41 Copynumber: 8.9 Consensus size: 41
68065555 AATTCAAAAA
* * * *
68065565 AGACGTTTAGCGGCGTTTCTCCAAAAACGCCGCTAGTGCTC
1 AGACTTTTGGCGGCGTTTTTCCAAAAACGCCGCTAATGCTC
** * * *
68065606 AGACTTTTGGCGGCGTTTTTGGAAAAACACCGCGAATACTC
1 AGACTTTTGGCGGCGTTTTTCCAAAAACGCCGCTAATGCTC
68065647 AGACTTTTGGCGGCGTTTTTCCAAAAACGCCGCTAATGCTC
1 AGACTTTTGGCGGCGTTTTTCCAAAAACGCCGCTAATGCTC
*
68065688 AGACTTTTGGCGGCGTTTTCCCAAAAACGCCGCTAATGCTC
1 AGACTTTTGGCGGCGTTTTTCCAAAAACGCCGCTAATGCTC
* *
68065729 AGTA-TTTTGGCGGCGTTTTCCCAAAAACGCCGCTAATTCTC
1 AG-ACTTTTGGCGGCGTTTTTCCAAAAACGCCGCTAATGCTC
* *
68065770 AGACTTTTAGCGGCGTTTTTCCAACAACGCCGCTAATGCTC
1 AGACTTTTGGCGGCGTTTTTCCAAAAACGCCGCTAATGCTC
* * *
68065811 AGACTTTTGGCGGCGCTTTTCCAACAACACCGCTAATGCTC
1 AGACTTTTGGCGGCGTTTTTCCAAAAACGCCGCTAATGCTC
* ** * ** * *
68065852 AGACTTTTGGCAGCGTTTTTGGAAAAATGCATCGAATTCTC
1 AGACTTTTGGCGGCGTTTTTCCAAAAACGCCGCTAATGCTC
* *
68065893 AGACTTTTGGCGGCGTTTTTTCGAAAACGCCGCTA
1 AGACTTTTGGCGGCGTTTTTCCAAAAACGCCGCTA
68065928 TTTCACGACT
Statistics
Matches: 278, Mismatches: 42, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
40 1 0.00
41 276 0.99
42 1 0.00
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (41 bp):
AGACTTTTGGCGGCGTTTTTCCAAAAACGCCGCTAATGCTC
Found at i:68071896 original size:19 final size:19
Alignment explanation
Indices: 68071859--68071896 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
68071849 GGGGGAGAAG
*
68071859 AAAAAGAAAATAAAGAAAT
1 AAAAAGAAAAAAAAGAAAT
*
68071878 AAAAAGAAAAAAAATAAAT
1 AAAAAGAAAAAAAAGAAAT
68071897 TGTTCAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.82, C:0.00, G:0.08, T:0.11
Consensus pattern (19 bp):
AAAAAGAAAAAAAAGAAAT
Found at i:68075684 original size:42 final size:42
Alignment explanation
Indices: 68075625--68075706 Score: 164
Period size: 42 Copynumber: 2.0 Consensus size: 42
68075615 GAACTACCAA
68075625 TTTGATAATATATCTAAATGTTATTGCATCCACCACAAAAAG
1 TTTGATAATATATCTAAATGTTATTGCATCCACCACAAAAAG
68075667 TTTGATAATATATCTAAATGTTATTGCATCCACCACAAAA
1 TTTGATAATATATCTAAATGTTATTGCATCCACCACAAAA
68075707 GAATATTATA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.40, C:0.17, G:0.09, T:0.34
Consensus pattern (42 bp):
TTTGATAATATATCTAAATGTTATTGCATCCACCACAAAAAG
Found at i:68079409 original size:130 final size:130
Alignment explanation
Indices: 68079239--68079695 Score: 483
Period size: 131 Copynumber: 3.5 Consensus size: 130
68079229 GAAAAATCGA
* * * ** * *
68079239 AACCCAGCAC-AGTAGGGCACGGTTCCTCGAATTTCGAAACATCGAGCGTTGCCTT-ATTTTTAA
1 AACCCAGCACGA-TAGGGCACGATTCC-CGAATTGCCAAACATCGAGTATTGCCTTCGTTTTCAA
* *
68079302 -AATTTTAAAAAAACATGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACACAC-AGGAAA
64 GAGTTTT-AAAAAACATGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAACGA-GAAA
68079365 TTGC
127 TTGC
* * *
68079369 AACTCAGCACGATAGGGCACGATTCCCTGAATTGCCAAACATCGAGTATTACCTTCGTTTTGAAG
1 AACCCAGCACGATAGGGCACGATTCCC-GAATTGCCAAACATCGAGTATTGCCTTCGTTTTCAAG
* * * * * * * *
68079434 AGTTTTTAAAGATATGAGTGAAATTCCAAAGGAATCTTCGATTGTTTCGAACAAACGAGAAATCG
65 AGTTTTAAAAAACATGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAACGAGAAATTG
68079499 C
130 C
* * * *
68079500 AACCCAGCACGATAGGGTACGATTCTCGAATTGCCAAACACCAAGTATTGCCTTCGTTTTCAAGA
1 AACCCAGCACGATAGGGCACGATTCCCGAATTGCCAAACATCGAGTATTGCCTTCGTTTTCAAGA
* * * * * * *
68079565 GTTTTTAGAAAACGTGAATGAAATTCTAAAGGGACATTCGGTTATTTTGAGCAAACGAGAAATTG
66 G-TTTTAAAAAACATGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAACGAGAAATTG
68079630 C
130 C
* * * ** *
68079631 AACCCAGCACGTTAGGGCACGATTCCGCGAATTGTCAAATATCGAACATCGCCTTCGTTTT-AAG
1 AACCCAGCACGATAGGGCACGATTCC-CGAATTGCCAAACATCGAGTATTGCCTTCGTTTTCAAG
68079695 A
65 A
68079696 AATTTTTAAA
Statistics
Matches: 269, Mismatches: 51, Indels: 13
0.81 0.15 0.04
Matches are distributed among these distances:
129 1 0.00
130 79 0.29
131 156 0.58
132 33 0.12
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.27
Consensus pattern (130 bp):
AACCCAGCACGATAGGGCACGATTCCCGAATTGCCAAACATCGAGTATTGCCTTCGTTTTCAAGA
GTTTTAAAAAACATGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAACGAGAAATTGC
Found at i:68085335 original size:27 final size:29
Alignment explanation
Indices: 68085305--68085361 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 29
68085295 TGTAATGGCT
68085305 TCAAAAAAGAT-T-ATTATCAGCAAACCA
1 TCAAAAAAGATATCATTATCAGCAAACCA
*
68085332 TCAAAGAAGATCATCATTATCAGCAAACCA
1 TCAAAAAAGAT-ATCATTATCAGCAAACCA
68085362 ACTCTCAAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
27 10 0.38
29 1 0.04
30 15 0.58
ACGTcount: A:0.49, C:0.21, G:0.09, T:0.21
Consensus pattern (29 bp):
TCAAAAAAGATATCATTATCAGCAAACCA
Found at i:68086938 original size:16 final size:15
Alignment explanation
Indices: 68086913--68086960 Score: 62
Period size: 16 Copynumber: 3.1 Consensus size: 15
68086903 ATATTTTAAG
68086913 TTTATTTTAATTTTA
1 TTTATTTTAATTTTA
68086928 TTTATTTTTAATTATTA
1 TTTA-TTTTAATT-TTA
68086945 -TTATTTTAGATTTTA
1 TTTATTTTA-ATTTTA
68086960 T
1 T
68086961 ATTTCTTAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
15 12 0.41
16 14 0.48
17 3 0.10
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (15 bp):
TTTATTTTAATTTTA
Found at i:68093602 original size:10 final size:10
Alignment explanation
Indices: 68093587--68093619 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
68093577 GGCAACCCAA
68093587 ATTTATTTTT
1 ATTTATTTTT
*
68093597 ATTTATTTTC
1 ATTTATTTTT
68093607 ATTTA-TTTT
1 ATTTATTTTT
68093616 ATTT
1 ATTT
68093620 TTAGTTTAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 7 0.33
10 14 0.67
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (10 bp):
ATTTATTTTT
Found at i:68093919 original size:15 final size:15
Alignment explanation
Indices: 68093901--68093929 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
68093891 CCAACTACCC
68093901 ATCCATCAACCCAAT
1 ATCCATCAACCCAAT
68093916 ATCCATCAACCCAA
1 ATCCATCAACCCAA
68093930 ACCCAATTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.41, G:0.00, T:0.17
Consensus pattern (15 bp):
ATCCATCAACCCAAT
Found at i:68100758 original size:17 final size:17
Alignment explanation
Indices: 68100738--68100771 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
68100728 AGGTTTGGGT
68100738 TTAAAAATTTTAATTAA
1 TTAAAAATTTTAATTAA
*
68100755 TTAAAATTTTTAATTAA
1 TTAAAAATTTTAATTAA
68100772 AAATCTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TTAAAAATTTTAATTAA
Found at i:68103583 original size:13 final size:13
Alignment explanation
Indices: 68103565--68103589 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68103555 TTGGCAATGC
68103565 TTTTGAAAAGTGA
1 TTTTGAAAAGTGA
68103578 TTTTGAAAAGTG
1 TTTTGAAAAGTG
68103590 CTGTAAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.24, T:0.40
Consensus pattern (13 bp):
TTTTGAAAAGTGA
Found at i:68108343 original size:132 final size:130
Alignment explanation
Indices: 68108023--68108416 Score: 445
Period size: 131 Copynumber: 3.0 Consensus size: 130
68108013 TTGCCTTCCC
* * * * ** * * *
68108023 TTAGAAAACACGAGTGAAATTCCAAAGGAATATTTGATTATTTTGAATAAACGGGAAATCGAAAC
1 TTAGAAAACATGAGTGAAATTCTAAAGGAACATTCGATTATTTTGAGCAAACGAGAAATTGCAAC
* * * * * * *
68108088 CCAGCACGATAAGGCACTATTCCT-CGAATTTCCAAACATCGAATATTGCCTTCGCTTTAAAGAG
66 CCAGCAC-ATTAGGCACGATT-CTGCGAATTGCCAAA-ATCGAACATCGCCTTCGTTTTAAAGAA
68108152 TTT
128 TTT
* *
68108155 TTA-AAGACATGAGTGAAATTCTAAAGGAACATTCGATTATTTTGAGCAACCGAGAAATTGCAAC
1 TTAGAAAACATGAGTGAAATTCTAAAGGAACATTCGATTATTTTGAGCAAACGAGAAATTGCAAC
* * *
68108219 CCAGCACATTAGGACACGATTCTGCGAATGGCCAAATATCAAACATCGCCTTTGTTTTAAAGAAT
66 CCAGCACATTAGG-CACGATTCTGCGAATTGCCAAA-ATCGAACATCGCCTTCGTTTTAAAGAAT
68108284 TT
129 TT
* * *
68108286 TTAGAAAACATGAATGAAATTCTAAAGGGACACTCGATTATTTTGAGCAAACGAGAAATTGCAAC
1 TTAGAAAACATGAGTGAAATTCTAAAGGAACATTCGATTATTTTGAGCAAACGAGAAATTGCAAC
* * * * * *
68108351 CCAGCACGTTAGGCATGATTCAGCGAATTG-C-TAATCGGACATCGCCTTCGTTTTAGAGAATTT
66 CCAGCACATTAGGCACGATTCTGCGAATTGCCAAAATCGAACATCGCCTTCGTTTTAAAGAATTT
68108414 TTA
1 TTA
68108417 AATGAATAAT
Statistics
Matches: 223, Mismatches: 36, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
128 29 0.13
129 1 0.00
130 8 0.04
131 114 0.51
132 71 0.32
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (130 bp):
TTAGAAAACATGAGTGAAATTCTAAAGGAACATTCGATTATTTTGAGCAAACGAGAAATTGCAAC
CCAGCACATTAGGCACGATTCTGCGAATTGCCAAAATCGAACATCGCCTTCGTTTTAAAGAATTT
Found at i:68124278 original size:24 final size:24
Alignment explanation
Indices: 68124219--68124279 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
68124209 GTACATGTAT
* *
68124219 GCTCATACGAGCTATAAATGGTAA
1 GCTCATACGAGCTAAAAATGGAAA
*
68124243 GCTCCT-CTGAGCTAAAAATGGAAA
1 GCTCATAC-GAGCTAAAAATGGAAA
68124267 GCTCATACGAGCT
1 GCTCATACGAGCT
68124280 GAGTATCGGT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
23 1 0.03
24 29 0.94
25 1 0.03
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.23
Consensus pattern (24 bp):
GCTCATACGAGCTAAAAATGGAAA
Found at i:68124294 original size:25 final size:24
Alignment explanation
Indices: 68124265--68124315 Score: 66
Period size: 25 Copynumber: 2.1 Consensus size: 24
68124255 TAAAAATGGA
* *
68124265 AAGCTCATACGAGCTGAGTATCGGT
1 AAGCTCATAAGAGCTG-GAATCGGT
*
68124290 AAGCTCATAAGAGTTGGAATCGGT
1 AAGCTCATAAGAGCTGGAATCGGT
68124314 AA
1 AA
68124316 CCCTAATGAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 9 0.39
25 14 0.61
ACGTcount: A:0.33, C:0.16, G:0.27, T:0.24
Consensus pattern (24 bp):
AAGCTCATAAGAGCTGGAATCGGT
Found at i:68128236 original size:49 final size:49
Alignment explanation
Indices: 68128168--68128454 Score: 306
Period size: 49 Copynumber: 5.8 Consensus size: 49
68128158 AGGTCATGTC
* * *
68128168 TGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATG
1 TGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGATCGCATG
* * * * * *
68128217 TGTAGTACTAAGTGTAGGCTACTATGCGTACCCGAAAACTGTGATCACGTG
1 TGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-T-TGATCGCATG
* * * *
68128268 TGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGTATG
1 TGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGATCGCATG
* * * * *
68128317 TGTAGTACTAAGTGCTGGCTACTATGCGTACTC-GAAAACTATGATCACGTG
1 TGTAGTACTAAGTGCAGGCTACTACGCGTAC-CAGATAA-T-TGATCGCATG
* * * **
68128368 TATAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTTTTCGCATG
1 TGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGATCGCATG
*
68128417 TGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA
1 TGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA
68128455 CTTCGGCTAC
Statistics
Matches: 193, Mismatches: 39, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
49 111 0.58
50 6 0.03
51 76 0.39
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (49 bp):
TGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGATCGCATG
Found at i:68128341 original size:100 final size:100
Alignment explanation
Indices: 68128168--68128448 Score: 465
Period size: 100 Copynumber: 2.8 Consensus size: 100
68128158 AGGTCATGTC
68128168 TGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTG-T
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTGCT
*
68128232 AGGCTACTATGCGTACCCGAAAACTGTGATCACGTG
66 -GGCTACTATGCGTACCCGAAAACTATGATCACGTG
*
68128268 TGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGTATGTGTAGTACTAAGTGCT
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTGCT
*
68128333 GGCTACTATGCGTACTCGAAAACTATGATCACGTG
66 GGCTACTATGCGTACCCGAAAACTATGATCACGTG
* * * ** *
68128368 TATAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTTTTCGCATGTGTAGTACTAAGTGCA
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTGCT
68128433 GGCTACTATGCGTACC
66 GGCTACTATGCGTACC
68128449 AGATAACTTC
Statistics
Matches: 169, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
100 168 0.99
101 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (100 bp):
TGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTGCT
GGCTACTATGCGTACCCGAAAACTATGATCACGTG
Found at i:68136001 original size:42 final size:42
Alignment explanation
Indices: 68135942--68136027 Score: 163
Period size: 42 Copynumber: 2.0 Consensus size: 42
68135932 CAGCCAATTT
68135942 TTTCAACTCTCTTTGAGAGGTTTAAGGAGAGTTTGTTGTTTG
1 TTTCAACTCTCTTTGAGAGGTTTAAGGAGAGTTTGTTGTTTG
*
68135984 TTTCAATTCTCTTTGAGAGGTTTAAGGAGAGTTTGTTGTTTG
1 TTTCAACTCTCTTTGAGAGGTTTAAGGAGAGTTTGTTGTTTG
68136026 TT
1 TT
68136028 CTTTGATTGG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.19, C:0.08, G:0.26, T:0.48
Consensus pattern (42 bp):
TTTCAACTCTCTTTGAGAGGTTTAAGGAGAGTTTGTTGTTTG
Found at i:68139555 original size:60 final size:59
Alignment explanation
Indices: 68139431--68139571 Score: 169
Period size: 60 Copynumber: 2.4 Consensus size: 59
68139421 GCCAACTGTG
* * *
68139431 CTGATATGGGCAAGGCCCAATATATCTCGACTTGTATAGGGCTACGGCCCAGATTGATA
1 CTGATATGGGCTAGGCCCAATATATCTCGACTTGTAAAGGGCTACGGCCCAGATTAATA
* *
68139490 CTGATATGGGCTAGGCCCAGTATA-CTCTGTTAC-TGTAAAGGGCTATGGCCCAGATTAATA
1 CTGATATGGGCTAGGCCCAATATATCTC-G--ACTTGTAAAGGGCTACGGCCCAGATTAATA
* *
68139550 TTGATATGGGCTAAGGCTCAAT
1 CTGATATGGGCT-AGGCCCAAT
68139572 TAACACTAAA
Statistics
Matches: 70, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
58 3 0.04
59 23 0.33
60 35 0.50
61 9 0.13
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.28
Consensus pattern (59 bp):
CTGATATGGGCTAGGCCCAATATATCTCGACTTGTAAAGGGCTACGGCCCAGATTAATA
Found at i:68141561 original size:18 final size:18
Alignment explanation
Indices: 68141496--68141610 Score: 99
Period size: 18 Copynumber: 6.3 Consensus size: 18
68141486 AGCAATTAAT
*
68141496 CAATCAGTAATATTCATTAA
1 CAATCAGT--TATTCAGTAA
* *
68141516 CAATCAGTCAATCAG-AA
1 CAATCAGTTATTCAGTAA
* *
68141533 CAATTATTTATTCAGTAA
1 CAATCAGTTATTCAGTAA
*
68141551 CAGTCAGTTATTC-GATAA
1 CAATCAGTTATTCAG-TAA
* *
68141569 CAATCAATTATTCAATAA
1 CAATCAGTTATTCAGTAA
* *
68141587 TAATCAGTTATTCAGTAT
1 CAATCAGTTATTCAGTAA
68141605 CAATCA
1 CAATCA
68141611 ATTGATTGGT
Statistics
Matches: 74, Mismatches: 18, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
17 14 0.19
18 52 0.70
20 8 0.11
ACGTcount: A:0.42, C:0.17, G:0.08, T:0.34
Consensus pattern (18 bp):
CAATCAGTTATTCAGTAA
Found at i:68141580 original size:36 final size:36
Alignment explanation
Indices: 68141506--68141613 Score: 112
Period size: 36 Copynumber: 3.0 Consensus size: 36
68141496 CAATCAGTAA
* * * * *
68141506 TATTCATTAACAATCAGTCAATCAG-AACAATTATT
1 TATTCAATAACAATCAGTTATTCAGTAACAATCAAT
* *
68141541 TATTCAGTAACAGTCAGTTATTC-GATAACAATCAAT
1 TATTCAATAACAATCAGTTATTCAG-TAACAATCAAT
* *
68141577 TATTCAATAATAATCAGTTATTCAGTATCAATCAAT
1 TATTCAATAACAATCAGTTATTCAGTAACAATCAAT
68141613 T
1 T
68141614 GATTGGTTAT
Statistics
Matches: 60, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
34 1 0.02
35 19 0.32
36 39 0.65
37 1 0.02
ACGTcount: A:0.41, C:0.16, G:0.07, T:0.36
Consensus pattern (36 bp):
TATTCAATAACAATCAGTTATTCAGTAACAATCAAT
Found at i:68141880 original size:53 final size:53
Alignment explanation
Indices: 68141809--68141930 Score: 165
Period size: 53 Copynumber: 2.3 Consensus size: 53
68141799 CCAGAACAAT
* * * *
68141809 AACAGTGACAGTAGCAGTATGGTATACAGAGTACCTCATCAGAACAAATCC-A
1 AACAGTAACAGTAACAGTACGGTACACAGAGTACCTCATCAGAACAAATCCGA
* *
68141861 GAACGGTAACAGTAACAGTACGGTACACAGAGTACCTCATCGGAACAAATCCGA
1 -AACAGTAACAGTAACAGTACGGTACACAGAGTACCTCATCAGAACAAATCCGA
*
68141915 AACAGTAACAGCAACA
1 AACAGTAACAGTAACA
68141931 ATAGTCGGCA
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
53 59 0.98
54 1 0.02
ACGTcount: A:0.42, C:0.23, G:0.20, T:0.16
Consensus pattern (53 bp):
AACAGTAACAGTAACAGTACGGTACACAGAGTACCTCATCAGAACAAATCCGA
Found at i:68151540 original size:34 final size:34
Alignment explanation
Indices: 68151493--68151560 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
68151483 CCTTTGGAAC
*
68151493 TCACTAAGTTCTTTGAACTTACTTAGTTATCTTT
1 TCACTAAGCTCTTTGAACTTACTTAGTTATCTTT
68151527 TCACTAAGCTCTTTGAACTTACTTAGTTATCTTT
1 TCACTAAGCTCTTTGAACTTACTTAGTTATCTTT
68151561 CCTTCTCAGG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.24, C:0.19, G:0.09, T:0.49
Consensus pattern (34 bp):
TCACTAAGCTCTTTGAACTTACTTAGTTATCTTT
Found at i:68152309 original size:45 final size:45
Alignment explanation
Indices: 68152258--68152345 Score: 167
Period size: 45 Copynumber: 2.0 Consensus size: 45
68152248 ACTGAATTAA
*
68152258 ACAAACAATCCTACCGTAATACCTACATTAAATGCACATAATTCT
1 ACAAACAATCCTACCATAATACCTACATTAAATGCACATAATTCT
68152303 ACAAACAATCCTACCATAATACCTACATTAAATGCACATAATT
1 ACAAACAATCCTACCATAATACCTACATTAAATGCACATAATT
68152346 ACTTTTACCT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.44, C:0.26, G:0.03, T:0.26
Consensus pattern (45 bp):
ACAAACAATCCTACCATAATACCTACATTAAATGCACATAATTCT
Found at i:68157186 original size:47 final size:47
Alignment explanation
Indices: 68157135--68157357 Score: 340
Period size: 47 Copynumber: 4.7 Consensus size: 47
68157125 TTAGGATTCT
*
68157135 ATGTGATGGATGTGAACA-TGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
68157182 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
68157229 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
68157276 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * *
68157323 ACGTGATGGATGTGAAAGTGTATAAATGCGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
68157358 TCCCGAAGGG
Statistics
Matches: 163, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
46 1 0.01
47 162 0.99
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:68157513 original size:37 final size:37
Alignment explanation
Indices: 68157463--68157652 Score: 326
Period size: 37 Copynumber: 5.1 Consensus size: 37
68157453 CCGAGCTCTA
68157463 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
* *
68157500 AAGACCCGATGACTACGTGTGAGGATCTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
68157537 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
68157574 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
* * * *
68157611 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
68157648 AAGAC
1 AAGAC
68157653 TTCGTAATAA
Statistics
Matches: 145, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 145 1.00
ACGTcount: A:0.22, C:0.19, G:0.33, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
Found at i:68164926 original size:21 final size:21
Alignment explanation
Indices: 68164889--68164929 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
68164879 AATGCCACTA
*
68164889 TCTATTTTGGCCTGGAATGCT
1 TCTATTTTGACCTGGAATGCT
68164910 TCTATTTTGA-CTCGGAATGC
1 TCTATTTTGACCT-GGAATGC
68164930 AAGGCATACT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.17, C:0.20, G:0.22, T:0.41
Consensus pattern (21 bp):
TCTATTTTGACCTGGAATGCT
Found at i:68165192 original size:41 final size:38
Alignment explanation
Indices: 68165147--68165245 Score: 98
Period size: 41 Copynumber: 2.5 Consensus size: 38
68165137 TTTTATCATA
*
68165147 TAAAAATAT-TTATAA-TATTATATAATTTATAATGTTAGTAT
1 TAAAAATATATTA-AATTATT-TAT-ATTTATAATCTTA--AT
68165188 TAAAAAATATATTAAATTATTTATATTTATAATCTTAAT
1 T-AAAAATATATTAAATTATTTATATTTATAATCTTAAT
68165227 TAAAACATATA--AAATTATT
1 TAAAA-ATATATTAAATTATT
68165246 AAAATTTAAA
Statistics
Matches: 53, Mismatches: 1, Indels: 12
0.80 0.02 0.18
Matches are distributed among these distances:
37 8 0.15
38 4 0.08
39 8 0.15
41 13 0.25
42 13 0.25
43 7 0.13
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.46
Consensus pattern (38 bp):
TAAAAATATATTAAATTATTTATATTTATAATCTTAAT
Found at i:68165253 original size:37 final size:38
Alignment explanation
Indices: 68165157--68165253 Score: 99
Period size: 37 Copynumber: 2.5 Consensus size: 38
68165147 TAAAAATATT
* * *
68165157 TATAATATTA-TATAATTTATAATGTTAGTATTAAAAAA
1 TATAAAATTATTAAAATTTATAATCTTAG-ATTAAAAAA
* * *
68165195 TATATTAAATTATTTATATTTATAATCTTA-ATTAAAACA
1 TATA--AAATTATTAAAATTTATAATCTTAGATTAAAAAA
68165234 TATAAAATTATTAAAATTTA
1 TATAAAATTATTAAAATTTA
68165254 AATTAAAAAC
Statistics
Matches: 48, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
37 14 0.29
38 4 0.08
39 12 0.25
40 5 0.10
41 13 0.27
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.46
Consensus pattern (38 bp):
TATAAAATTATTAAAATTTATAATCTTAGATTAAAAAA
Found at i:68165279 original size:18 final size:18
Alignment explanation
Indices: 68165256--68165296 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
68165246 AAAATTTAAA
*
68165256 TTAAAAACAGATAAAAAT
1 TTAAAAACAAATAAAAAT
* *
68165274 TTAAAAATAAATTAAAAT
1 TTAAAAACAAATAAAAAT
68165292 TTAAA
1 TTAAA
68165297 CTTAAAAAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.29
Consensus pattern (18 bp):
TTAAAAACAAATAAAAAT
Found at i:68165466 original size:56 final size:56
Alignment explanation
Indices: 68165399--68165512 Score: 219
Period size: 56 Copynumber: 2.0 Consensus size: 56
68165389 ATTCGATCGT
*
68165399 AATCCATAGATATACAACTCTATATTTTATATGAATTTTAAATAAAATTTTTTATC
1 AATCCATAGATATACAACTCTATATTTTATATGAATTTTAAATAAAAATTTTTATC
68165455 AATCCATAGATATACAACTCTATATTTTATATGAATTTTAAATAAAAATTTTTATC
1 AATCCATAGATATACAACTCTATATTTTATATGAATTTTAAATAAAAATTTTTATC
68165511 AA
1 AA
68165513 GCACGGGTTC
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.43, C:0.11, G:0.04, T:0.43
Consensus pattern (56 bp):
AATCCATAGATATACAACTCTATATTTTATATGAATTTTAAATAAAAATTTTTATC
Found at i:68168372 original size:14 final size:16
Alignment explanation
Indices: 68168343--68168375 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
68168333 ATTGGATTAT
68168343 TTTAAGTTTAATTAAA
1 TTTAAGTTTAATTAAA
68168359 TTTAAG-TT-ATTAAA
1 TTTAAGTTTAATTAAA
68168373 TTT
1 TTT
68168376 TGTCGATTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 9 0.53
15 2 0.12
16 6 0.35
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (16 bp):
TTTAAGTTTAATTAAA
Found at i:68168553 original size:27 final size:26
Alignment explanation
Indices: 68168510--68168565 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 26
68168500 CTAGACATTA
68168510 TATAAAAAAATAGATA-TAACAAAAACT
1 TATAAAAAAATAGATATTAA-AAAAA-T
*
68168537 TATAATAAAATTA-ATATTAAAAAAAT
1 TATAA-AAAAATAGATATTAAAAAAAT
68168563 TAT
1 TAT
68168566 TAAATTTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
26 4 0.15
27 13 0.50
28 9 0.35
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.30
Consensus pattern (26 bp):
TATAAAAAAATAGATATTAAAAAAAT
Found at i:68173866 original size:26 final size:26
Alignment explanation
Indices: 68173837--68173944 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
68173827 TGGTACAAAT
68173837 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
68173863 TGATAAAGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
68173889 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
**
68173915 TGATAATGCTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
68173941 TGAT
1 TGAT
68173945 GGGCATTTCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.33, C:0.08, G:0.23, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:68180515 original size:26 final size:26
Alignment explanation
Indices: 68180486--68180590 Score: 174
Period size: 26 Copynumber: 4.0 Consensus size: 26
68180476 TGGTACAAAT
68180486 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
68180512 TGATAACGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
68180538 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
68180564 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
68180590 T
1 T
68180591 TATGGGCATT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 72 1.00
ACGTcount: A:0.32, C:0.09, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:68195698 original size:16 final size:16
Alignment explanation
Indices: 68195674--68195704 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
68195664 TTTTGAACAT
*
68195674 AATTGTTCTAAACAAC
1 AATTATTCTAAACAAC
68195690 AATTATTCTAAACAA
1 AATTATTCTAAACAA
68195705 GTGTTGTTGC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.16, G:0.03, T:0.32
Consensus pattern (16 bp):
AATTATTCTAAACAAC
Found at i:68198486 original size:14 final size:14
Alignment explanation
Indices: 68198467--68198496 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
68198457 TGTTGTTTTA
68198467 GTTATTTGCTTAAT
1 GTTATTTGCTTAAT
68198481 GTTATTTGCTTAAT
1 GTTATTTGCTTAAT
68198495 GT
1 GT
68198497 CTTCATGGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.20, C:0.07, G:0.17, T:0.57
Consensus pattern (14 bp):
GTTATTTGCTTAAT
Found at i:68199679 original size:21 final size:22
Alignment explanation
Indices: 68199637--68199682 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
68199627 ACACTACCTG
68199637 AAAAGAAAATAAAAATAGAAAT
1 AAAAGAAAATAAAAATAGAAAT
*
68199659 AAAA-AAAAGTAAACATA-AAAT
1 AAAAGAAAA-TAAAAATAGAAAT
68199680 AAA
1 AAA
68199683 TATCATATCT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 11 0.50
22 11 0.50
ACGTcount: A:0.78, C:0.02, G:0.07, T:0.13
Consensus pattern (22 bp):
AAAAGAAAATAAAAATAGAAAT
Found at i:68200068 original size:17 final size:16
Alignment explanation
Indices: 68200046--68200086 Score: 64
Period size: 16 Copynumber: 2.5 Consensus size: 16
68200036 AGTGAGATAA
68200046 AAATAAATAATGAAAAT
1 AAATAAATAA-GAAAAT
68200063 AAATAAATAAGAAAAT
1 AAATAAATAAGAAAAT
*
68200079 AAACAAAT
1 AAATAAAT
68200087 GACTTAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 13 0.57
17 10 0.43
ACGTcount: A:0.73, C:0.02, G:0.05, T:0.20
Consensus pattern (16 bp):
AAATAAATAAGAAAAT
Found at i:68209458 original size:55 final size:55
Alignment explanation
Indices: 68209368--68209484 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 55
68209358 GAAATGGCCA
* * *
68209368 TGGTCAAGCCTACCTAAATAACACGGGCGTGCGACACGCT-AGTGTAGAAGAACCG
1 TGGTCGAGCCTACCAAAATAACACGGGCGTGCGACACGCTCA-TGTAGAACAACCG
* * * * * *
68209423 TGGTCGAGCCTGCCAAAATAGCACGGGTGTTCGACACGCTCATGTGGAACACCCG
1 TGGTCGAGCCTACCAAAATAACACGGGCGTGCGACACGCTCATGTAGAACAACCG
68209478 TGGTCGA
1 TGGTCGA
68209485 ACCTTAACAC
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
55 51 0.98
56 1 0.02
ACGTcount: A:0.26, C:0.26, G:0.29, T:0.18
Consensus pattern (55 bp):
TGGTCGAGCCTACCAAAATAACACGGGCGTGCGACACGCTCATGTAGAACAACCG
Found at i:68214528 original size:18 final size:18
Alignment explanation
Indices: 68214505--68214592 Score: 70
Period size: 18 Copynumber: 4.8 Consensus size: 18
68214495 GAACGATTAT
68214505 TTATTCAGTAACAGTTAG
1 TTATTCAGTAACAGTTAG
* * *
68214523 TTATTCGGTAACA-ATCG
1 TTATTCAGTAACAGTTAG
* * *
68214540 ATTATTCAATAATAGTCAG
1 -TTATTCAGTAACAGTTAG
* * *
68214559 TTATTCAATAACAATTAAA
1 TTATTCAGTAACAGTT-AG
68214578 TTATTCAGTAACAGT
1 TTATTCAGTAACAGT
68214593 CGATCTTTCT
Statistics
Matches: 52, Mismatches: 15, Indels: 5
0.72 0.21 0.07
Matches are distributed among these distances:
17 2 0.04
18 35 0.67
19 15 0.29
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.38
Consensus pattern (18 bp):
TTATTCAGTAACAGTTAG
Found at i:68214561 original size:36 final size:36
Alignment explanation
Indices: 68214505--68214593 Score: 97
Period size: 36 Copynumber: 2.4 Consensus size: 36
68214495 GAACGATTAT
* * **
68214505 TTATTCAGTAACAGTTAGTTATTCGGTAACAATCGA
1 TTATTCAATAACAGTCAGTTATTCAATAACAATCGA
* **
68214541 TTATTCAATAATAGTCAGTTATTCAATAACAATTAAA
1 TTATTCAATAACAGTCAGTTATTCAATAACAA-TCGA
*
68214578 TTATTCAGTAACAGTC
1 TTATTCAATAACAGTC
68214594 GATCTTTCTA
Statistics
Matches: 43, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
36 27 0.63
37 16 0.37
ACGTcount: A:0.38, C:0.13, G:0.11, T:0.37
Consensus pattern (36 bp):
TTATTCAATAACAGTCAGTTATTCAATAACAATCGA
Found at i:68214769 original size:53 final size:50
Alignment explanation
Indices: 68214705--68214818 Score: 135
Period size: 47 Copynumber: 2.3 Consensus size: 50
68214695 GCCGAAGCGG
* * *
68214705 AAACAATAACAGTAGAAATACGGTACACAGAGTACCTCATTGGAACAAATCCG
1 AAACAGTAACAGTAG---TACGGTACACAGAGTACCTCATCGGAACAAATCCA
*
68214758 GAACAGTAAC---AGTACGGTACACAGAGTACCTCATCGGAACAAATCCA
1 AAACAGTAACAGTAGTACGGTACACAGAGTACCTCATCGGAACAAATCCA
*
68214805 AAATAGTAACAGTA
1 AAACAGTAACAGTA
68214819 ACGGTAACAA
Statistics
Matches: 52, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
47 41 0.79
50 3 0.06
53 8 0.15
ACGTcount: A:0.45, C:0.21, G:0.18, T:0.17
Consensus pattern (50 bp):
AAACAGTAACAGTAGTACGGTACACAGAGTACCTCATCGGAACAAATCCA
Found at i:68214781 original size:47 final size:47
Alignment explanation
Indices: 68214723--68214824 Score: 159
Period size: 47 Copynumber: 2.1 Consensus size: 47
68214713 ACAGTAGAAA
* **
68214723 TACGGTACACAGAGTACCTCATTGGAACAAATCCGGAACAGTAACAG
1 TACGGTACACAGAGTACCTCATCGGAACAAATCCAAAACAGTAACAG
*
68214770 TACGGTACACAGAGTACCTCATCGGAACAAATCCAAAATAGTAACAG
1 TACGGTACACAGAGTACCTCATCGGAACAAATCCAAAACAGTAACAG
68214817 TAACGGTA
1 T-ACGGTA
68214825 ACAATAACAG
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
47 44 0.88
48 6 0.12
ACGTcount: A:0.40, C:0.23, G:0.20, T:0.18
Consensus pattern (47 bp):
TACGGTACACAGAGTACCTCATCGGAACAAATCCAAAACAGTAACAG
Found at i:68214982 original size:16 final size:16
Alignment explanation
Indices: 68214953--68214990 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
68214943 TAATTCACTT
68214953 TTCAATTTTCAATTAA
1 TTCAATTTTCAATTAA
68214969 TTCATATTTT-AATTAA
1 TTCA-ATTTTCAATTAA
68214985 TT-AATT
1 TTCAATT
68214991 ATATTTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
14 3 0.14
15 1 0.05
16 12 0.57
17 5 0.24
ACGTcount: A:0.37, C:0.08, G:0.00, T:0.55
Consensus pattern (16 bp):
TTCAATTTTCAATTAA
Done.