Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 206 of 255
Found at i:68922284 original size:31 final size:30
Alignment explanation
Indices: 68922242--68922302 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 30
68922232 AATTATAAGT
*
68922242 TAAAAAATTATATCAACTTTTAAAATAACA
1 TAAAAAATTATACCAACTTTTAAAATAACA
*
68922272 TAAAAATATTATACCGACTTTTAAAATAACA
1 TAAAAA-ATTATACCAACTTTTAAAATAACA
68922303 ATACATACAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
30 6 0.21
31 22 0.79
ACGTcount: A:0.54, C:0.11, G:0.02, T:0.33
Consensus pattern (30 bp):
TAAAAAATTATACCAACTTTTAAAATAACA
Found at i:68922478 original size:10 final size:10
Alignment explanation
Indices: 68922465--68922491 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
68922455 TAAATATTAT
68922465 AAAATAAGGA
1 AAAATAAGGA
68922475 AAAATAAGGA
1 AAAATAAGGA
68922485 AAAATAA
1 AAAATAA
68922492 ATAATAGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.74, C:0.00, G:0.15, T:0.11
Consensus pattern (10 bp):
AAAATAAGGA
Found at i:68922750 original size:12 final size:12
Alignment explanation
Indices: 68922719--68922751 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
68922709 CTAAATTTTC
*
68922719 TTTTCTATTTAT
1 TTTTCTCTTTAT
68922731 TTTT-TCTTTAT
1 TTTTCTCTTTAT
68922742 TTTTCTCTTT
1 TTTTCTCTTT
68922752 CCTTTCCTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.09, C:0.12, G:0.00, T:0.79
Consensus pattern (12 bp):
TTTTCTCTTTAT
Found at i:68924649 original size:17 final size:17
Alignment explanation
Indices: 68924624--68924662 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
68924614 TAATTAATTT
*
68924624 TAAAATTTTATCTAAAA
1 TAAATTTTTATCTAAAA
*
68924641 TAAATTTTTATTTAAAA
1 TAAATTTTTATCTAAAA
68924658 -AAATT
1 TAAATT
68924663 AATTCATCAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 5 0.25
17 15 0.75
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (17 bp):
TAAATTTTTATCTAAAA
Found at i:68925176 original size:12 final size:12
Alignment explanation
Indices: 68925161--68925185 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
68925151 GCCCTATAGC
68925161 AAGATGAAGATA
1 AAGATGAAGATA
68925173 AAGATGAAGATA
1 AAGATGAAGATA
68925185 A
1 A
68925186 TGAGGTGTGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.24, T:0.16
Consensus pattern (12 bp):
AAGATGAAGATA
Found at i:68925460 original size:22 final size:21
Alignment explanation
Indices: 68925416--68925461 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
68925406 TACTCCCAAA
* *
68925416 TTTTCACTTTTTCTTCAATAT
1 TTTTCACTTTTTATTCAAAAT
*
68925437 TTTTCACATTTTTATTTAAAAT
1 TTTTCAC-TTTTTATTCAAAAT
68925459 TTT
1 TTT
68925462 AATTTCCTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.24, C:0.13, G:0.00, T:0.63
Consensus pattern (21 bp):
TTTTCACTTTTTATTCAAAAT
Found at i:68925461 original size:21 final size:20
Alignment explanation
Indices: 68925413--68925461 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
68925403 CTCTACTCCC
*
68925413 AAATTTTCACTTTTTCTTCA
1 AAATTTTCACTTTTTATTCA
* *
68925433 ATATTTTTCACATTTTTATTTA
1 A-AATTTTCAC-TTTTTATTCA
68925455 AAATTTT
1 AAATTTT
68925462 AATTTCCTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
20 1 0.04
21 13 0.57
22 9 0.39
ACGTcount: A:0.29, C:0.12, G:0.00, T:0.59
Consensus pattern (20 bp):
AAATTTTCACTTTTTATTCA
Found at i:68928488 original size:21 final size:22
Alignment explanation
Indices: 68928441--68928482 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
68928431 TGTGTGTGTT
68928441 TTTTTAGATAATTTTTTTTTCC
1 TTTTTAGATAATTTTTTTTTCC
* *
68928463 TTTTTATATGATTTTTTTTT
1 TTTTTAGATAATTTTTTTTT
68928483 GTTTTTTCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.17, C:0.05, G:0.05, T:0.74
Consensus pattern (22 bp):
TTTTTAGATAATTTTTTTTTCC
Found at i:68928488 original size:22 final size:22
Alignment explanation
Indices: 68928440--68928494 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
68928430 TTGTGTGTGT
*
68928440 TTTTTTAGATAATTTTTTTTTC
1 TTTTTTATATAATTTTTTTTTC
* * *
68928462 CTTTTTATATGATTTTTTTTTG
1 TTTTTTATATAATTTTTTTTTC
68928484 TTTTTTCATAT
1 TTTTTT-ATAT
68928495 TTTCAGTTGT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 23 0.85
23 4 0.15
ACGTcount: A:0.16, C:0.05, G:0.05, T:0.73
Consensus pattern (22 bp):
TTTTTTATATAATTTTTTTTTC
Found at i:68937228 original size:10 final size:10
Alignment explanation
Indices: 68937213--68937262 Score: 68
Period size: 10 Copynumber: 5.0 Consensus size: 10
68937203 TAATTCTAGG
68937213 ATTTAT-TTT
1 ATTTATCTTT
68937222 CATTTATCTTT
1 -ATTTATCTTT
68937233 ATTTATCTTT
1 ATTTATCTTT
68937243 ATTTAT-TTGT
1 ATTTATCTT-T
68937253 ATTTATCTTT
1 ATTTATCTTT
68937263 TAGAATTTCA
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
9 2 0.05
10 30 0.81
11 5 0.14
ACGTcount: A:0.20, C:0.08, G:0.02, T:0.70
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:68942409 original size:3 final size:3
Alignment explanation
Indices: 68942401--68942558 Score: 71
Period size: 3 Copynumber: 52.7 Consensus size: 3
68942391 TAAAACATGT
* * *
68942401 ATA ATA AT- ATG ACA ATA ATA ATA ACA ATA ATA ATAA ATAA ATAA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A AT-A AT-A ATA
* * * *
68942448 ATA AAA ATA AGA GTA A-A GAAA ATA A-A GATA A-A ATTA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA -ATA ATA ATA -ATA ATA A-TA ATA ATA ATA
* * * *
68942493 CTA ACGA AT- ATA AGTA ATA ATA GTA A-A ATA ATA ATA ATA ATA ATG
1 ATA A-TA ATA ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
68942538 GTA AT- ATA A-A TTA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA AT
68942559 GGTGATGTAA
Statistics
Matches: 117, Mismatches: 24, Indels: 28
0.69 0.14 0.17
Matches are distributed among these distances:
2 13 0.11
3 84 0.72
4 20 0.17
ACGTcount: A:0.63, C:0.03, G:0.06, T:0.28
Consensus pattern (3 bp):
ATA
Found at i:68942456 original size:27 final size:28
Alignment explanation
Indices: 68942401--68942490 Score: 80
Period size: 27 Copynumber: 3.4 Consensus size: 28
68942391 TAAAACATGT
* * *
68942401 ATAATAAT-ATGACAAT-AATAATAACA
1 ATAATAATAAAGAAAATAAATAATAAAA
*
68942427 ATAATAATAAA-TAAATAAATAATAAAA
1 ATAATAATAAAGAAAATAAATAATAAAA
* * *
68942454 ATAAGAGTAAAGAAAATAAA-GATAAAA
1 ATAATAATAAAGAAAATAAATAATAAAA
*
68942481 TTAATAATAA
1 ATAATAATAA
68942491 TACTAACGAA
Statistics
Matches: 50, Mismatches: 11, Indels: 5
0.76 0.17 0.08
Matches are distributed among these distances:
26 11 0.22
27 32 0.64
28 7 0.14
ACGTcount: A:0.68, C:0.02, G:0.06, T:0.24
Consensus pattern (28 bp):
ATAATAATAAAGAAAATAAATAATAAAA
Found at i:68942818 original size:3 final size:3
Alignment explanation
Indices: 68942804--68942886 Score: 66
Period size: 3 Copynumber: 28.3 Consensus size: 3
68942794 TTAATAAGAG
* * * *
68942804 TAA TAG TAA TAA TAA TAA AAA TAA TAA TAG TAGA T-A TAA TAA TAC
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA
* *
68942849 TAC TAC TAA TAA TAA TAA -ATA TAA TAA TAA -AA -AA TAA T
1 TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA T
68942887 TAATTTGAAA
Statistics
Matches: 67, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
2 7 0.10
3 58 0.87
4 2 0.03
ACGTcount: A:0.61, C:0.04, G:0.04, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:68943528 original size:15 final size:14
Alignment explanation
Indices: 68943492--68943542 Score: 52
Period size: 14 Copynumber: 3.6 Consensus size: 14
68943482 TTTTTATTTA
*
68943492 AAAGAAAAATGAAG
1 AAAGAAAAAAGAAG
68943506 AAAGAAAAAAGAAG
1 AAAGAAAAAAGAAG
*
68943520 TAAATAAAATAA-AAG
1 -AAAGAAAA-AAGAAG
68943535 AAA-AAAAA
1 AAAGAAAAA
68943543 CTTTTTCCCG
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
12 1 0.03
13 4 0.12
14 16 0.48
15 10 0.30
16 2 0.06
ACGTcount: A:0.78, C:0.00, G:0.14, T:0.08
Consensus pattern (14 bp):
AAAGAAAAAAGAAG
Found at i:68944306 original size:7 final size:8
Alignment explanation
Indices: 68944262--68944312 Score: 50
Period size: 8 Copynumber: 5.9 Consensus size: 8
68944252 ATTTTTATTT
68944262 TTATTTTA
1 TTATTTTA
68944270 TTATTTTA
1 TTATTTTA
68944278 TTAATTAATTA
1 TT-ATT--TTA
68944289 CTTTATTTTA
1 --TTATTTTA
68944299 TT-TTTTA
1 TTATTTTA
68944306 TTATTTT
1 TTATTTT
68944313 TTAGGTAATA
Statistics
Matches: 37, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
7 7 0.19
8 16 0.43
9 3 0.08
10 3 0.08
11 3 0.08
12 3 0.08
13 2 0.05
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (8 bp):
TTATTTTA
Found at i:68946289 original size:10 final size:10
Alignment explanation
Indices: 68946274--68946323 Score: 66
Period size: 10 Copynumber: 5.0 Consensus size: 10
68946264 TAATTTTAAG
68946274 ATTTATCTTT
1 ATTTATCTTT
68946284 ATTTATCTTT
1 ATTTATCTTT
*
68946294 AATTATCTTT
1 ATTTATCTTT
*
68946304 ATTCAT-TTGT
1 ATTTATCTT-T
68946314 ATTTATCTTT
1 ATTTATCTTT
68946324 TGGAATAATT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
9 2 0.06
10 30 0.88
11 2 0.06
ACGTcount: A:0.22, C:0.10, G:0.02, T:0.66
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:68949737 original size:15 final size:15
Alignment explanation
Indices: 68949717--68949746 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
68949707 CGAGGAGATC
68949717 TATATGGAGCAACTT
1 TATATGGAGCAACTT
68949732 TATATGGAGCAACTT
1 TATATGGAGCAACTT
68949747 CCAAGATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.33
Consensus pattern (15 bp):
TATATGGAGCAACTT
Found at i:68950871 original size:29 final size:30
Alignment explanation
Indices: 68950807--68950893 Score: 101
Period size: 29 Copynumber: 3.0 Consensus size: 30
68950797 TCTGCCACTT
*
68950807 AGGCATTCC-TTT-CCAATGATAGCCAC-A
1 AGGCATTCCTTTTAACAATGATAGCCACAA
* * *
68950834 GGGCATTCCTTTTAATAATGATAGCTACAA
1 AGGCATTCCTTTTAACAATGATAGCCACAA
*
68950864 AGGC-TTCCTTTTAACAAAGATAGCCACAA
1 AGGCATTCCTTTTAACAATGATAGCCACAA
68950893 A
1 A
68950894 TGTATTATTT
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
27 8 0.16
28 3 0.06
29 34 0.69
30 4 0.08
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (30 bp):
AGGCATTCCTTTTAACAATGATAGCCACAA
Found at i:68950936 original size:29 final size:29
Alignment explanation
Indices: 68950904--68951075 Score: 146
Period size: 29 Copynumber: 5.8 Consensus size: 29
68950894 TGTATTATTT
68950904 TAATAGAGATCACCACAAAGGCTTTCTTATAA
1 TAATAGAGATCACCACAAAGGCTTTC-T-T-A
* ** * * *
68950936 TAATAGAGATAATAAAAAAGGCATTCTTT
1 TAATAGAGATCACCACAAAGGCTTTCTTA
* * * *
68950965 TAATAGAGATCATCACAAAAGATTCCTTA
1 TAATAGAGATCACCACAAAGGCTTTCTTA
* * * * * *
68950994 TAATAAAGATAACCAAAAAGGCATTGTTT
1 TAATAGAGATCACCACAAAGGCTTTCTTA
*
68951023 TAATAGAGATCACCACAAAGGCTTCCTTA
1 TAATAGAGATCACCACAAAGGCTTTCTTA
* *
68951052 TAACAGAGGTCACCACAAAGGCTT
1 TAATAGAGATCACCACAAAGGCTT
68951076 CTTTTCAGAG
Statistics
Matches: 107, Mismatches: 33, Indels: 3
0.75 0.23 0.02
Matches are distributed among these distances:
29 84 0.79
30 1 0.01
31 1 0.01
32 21 0.20
ACGTcount: A:0.43, C:0.17, G:0.14, T:0.26
Consensus pattern (29 bp):
TAATAGAGATCACCACAAAGGCTTTCTTA
Found at i:68951073 original size:58 final size:58
Alignment explanation
Indices: 68950860--68951056 Score: 232
Period size: 58 Copynumber: 3.3 Consensus size: 58
68950850 AATGATAGCT
* * * * *
68950860 ACAAAGGCTTCCTTTTAACAAAGATAGCCACAAATGTATTATTTTAATAGAGATCACC
1 ACAAAGGCTTCCTTATAACAAAGATAACCAAAAAGGCATTATTTTAATAGAGATCACC
* * ** * *
68950918 ACAAAGGCTTTCTTATAATAATAGAGATAATAAAAAAGGCATTCTTTTAATAGAGATCATC
1 ACAAAGGCTTCCTTATAA-CA-A-AGATAACCAAAAAGGCATTATTTTAATAGAGATCACC
* * * *
68950979 ACAAAAGATTCCTTATAATAAAGATAACCAAAAAGGCATTGTTTTAATAGAGATCACC
1 ACAAAGGCTTCCTTATAACAAAGATAACCAAAAAGGCATTATTTTAATAGAGATCACC
68951037 ACAAAGGCTTCCTTATAACA
1 ACAAAGGCTTCCTTATAACA
68951057 GAGGTCACCA
Statistics
Matches: 114, Mismatches: 22, Indels: 6
0.80 0.15 0.04
Matches are distributed among these distances:
58 66 0.58
59 2 0.02
60 2 0.02
61 44 0.39
ACGTcount: A:0.43, C:0.16, G:0.12, T:0.28
Consensus pattern (58 bp):
ACAAAGGCTTCCTTATAACAAAGATAACCAAAAAGGCATTATTTTAATAGAGATCACC
Found at i:68953494 original size:43 final size:44
Alignment explanation
Indices: 68953446--68953614 Score: 150
Period size: 43 Copynumber: 3.9 Consensus size: 44
68953436 TACCGAGATA
*
68953446 TGATTACATGTAAGATAATGTCTGGGACATTGGCATTGTAT-TG
1 TGATTACATGTAAGACAATGTCTGGGACATTGGCATTGTATATG
* * * **
68953489 TGATTACGTGTAAAACCATGTCTGGGACATTAACATTGTTATAT-
1 TGATTACATGTAAGACAATGTCTGGGACATTGGCATTG-TATATG
* * * * * *
68953533 T-ATTTCGTGTAAGACACTGTCTAGGACAGTGGCATCG-ATATG
1 TGATTACATGTAAGACAATGTCTGGGACATTGGCATTGTATATG
* * * *
68953575 TGATAACATGTAAGACCATATCTGGGATA-TGGCATTGTAT
1 TGATTACATGTAAGACAATGTCTGGGACATTGGCATTGTAT
68953615 GAACTTTATG
Statistics
Matches: 97, Mismatches: 24, Indels: 10
0.74 0.18 0.08
Matches are distributed among these distances:
41 4 0.04
42 8 0.08
43 80 0.82
44 4 0.04
45 1 0.01
ACGTcount: A:0.30, C:0.13, G:0.23, T:0.34
Consensus pattern (44 bp):
TGATTACATGTAAGACAATGTCTGGGACATTGGCATTGTATATG
Found at i:68957212 original size:27 final size:26
Alignment explanation
Indices: 68957164--68957223 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
68957154 GTGAGGCTGC
*
68957164 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
68957191 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
68957217 CAGATAT
1 CAGATAT
68957224 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:68958053 original size:27 final size:27
Alignment explanation
Indices: 68957964--68958055 Score: 112
Period size: 27 Copynumber: 3.4 Consensus size: 27
68957954 TAGGCAAAAT
* *
68957964 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATCTC
* *
68957991 GGTAATTCTACCCTACAGGGGTATGTC
1 GGTAATTCTACCCTACAAGGGTATCTC
* * * *
68958018 GATATTTCTACGCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATCTC
68958045 GGTAATTCTAC
1 GGTAATTCTAC
68958056 AAATTATCCA
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.33
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATCTC
Found at i:68965544 original size:27 final size:26
Alignment explanation
Indices: 68965456--68965546 Score: 110
Period size: 27 Copynumber: 3.4 Consensus size: 26
68965446 AGGAAAAATG
* * *
68965456 GTAATTTTACCCCACAAGGGTATCTC
1 GTAATTCTACCCTACAAGGGTATTTC
*
68965482 GGTAATTCTACCCTACAGGGGTATTTC
1 -GTAATTCTACCCTACAAGGGTATTTC
*
68965509 GATATTTCTACCCTACAAGGGTATTTC
1 G-TAATTCTACCCTACAAGGGTATTTC
68965536 TGTAATTCTAC
1 -GTAATTCTAC
68965547 AAATTATCCA
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
26 1 0.02
27 53 0.96
28 1 0.02
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.35
Consensus pattern (26 bp):
GTAATTCTACCCTACAAGGGTATTTC
Found at i:68966421 original size:41 final size:41
Alignment explanation
Indices: 68966376--68966453 Score: 120
Period size: 41 Copynumber: 1.9 Consensus size: 41
68966366 CGTTACAAAA
* *
68966376 GGGATTTGCTTTAAACCAATCTAACTATATAGAGAAAATGT
1 GGGATCTGCTTTAAACCAATCTAACTATATAAAGAAAATGT
* *
68966417 GGGATCTGCTTTAAACCAATTTCACTATATAAAGAAA
1 GGGATCTGCTTTAAACCAATCTAACTATATAAAGAAA
68966454 GTGCTAAAGA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 33 1.00
ACGTcount: A:0.40, C:0.14, G:0.15, T:0.31
Consensus pattern (41 bp):
GGGATCTGCTTTAAACCAATCTAACTATATAAAGAAAATGT
Found at i:68970904 original size:34 final size:35
Alignment explanation
Indices: 68970860--68970926 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
68970850 CTGTAAAATG
68970860 TTTTCCGTAAAATGAATT-CTGGAAAATATTTTAC
1 TTTTCCGTAAAATGAATTACTGGAAAATATTTTAC
* *
68970894 TTTTCTGTAAAATGACTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGAATTACTGGAAAATATTTT
68970927 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 16 0.53
35 14 0.47
ACGTcount: A:0.34, C:0.10, G:0.12, T:0.43
Consensus pattern (35 bp):
TTTTCCGTAAAATGAATTACTGGAAAATATTTTAC
Found at i:68972301 original size:27 final size:27
Alignment explanation
Indices: 68972271--68972340 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
68972261 AATAATCAAT
*
68972271 TCAATATCCAACAATGTTAAAACATA-A
1 TCAATATCCAACAAT-TCAAAACATATA
* *
68972298 TCAATATCTAACCAATTCAAGACATATA
1 TCAATATCCAA-CAATTCAAAACATATA
*
68972326 TCAAAATCCAACAAT
1 TCAATATCCAACAAT
68972341 CTAAAATCTG
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
27 22 0.61
28 14 0.39
ACGTcount: A:0.50, C:0.21, G:0.03, T:0.26
Consensus pattern (27 bp):
TCAATATCCAACAATTCAAAACATATA
Found at i:68976608 original size:6 final size:6
Alignment explanation
Indices: 68976597--68976627 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
68976587 AATATTTCCC
*
68976597 ACAGAA ACAGAA ACAGAA ACAAAA ACAGAA A
1 ACAGAA ACAGAA ACAGAA ACAGAA ACAGAA A
68976628 ATACAAACCC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.71, C:0.16, G:0.13, T:0.00
Consensus pattern (6 bp):
ACAGAA
Found at i:68977087 original size:6 final size:6
Alignment explanation
Indices: 68977078--68977110 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
68977068 CAAAAATTTG
*
68977078 ATTTGC ATTTTC ATTTTC ATTTTC ATTTTC ATT
1 ATTTTC ATTTTC ATTTTC ATTTTC ATTTTC ATT
68977111 CATAAACTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.18, C:0.15, G:0.03, T:0.64
Consensus pattern (6 bp):
ATTTTC
Found at i:68979323 original size:113 final size:113
Alignment explanation
Indices: 68979122--68979332 Score: 377
Period size: 113 Copynumber: 1.9 Consensus size: 113
68979112 ATTTTATTAA
* *
68979122 TCAAATGAGTCCTTCAATTTGAAGTACCGTTTTCATCAATAACCTGTCCAATGAAACTGAATTCA
1 TCAAATGAGTCCATCAATTTGAAGTACCATTTTCATCAATAACCTGTCCAATGAAACTGAATTCA
* *
68979187 ATGCTTAAGTTGTTCAACTACCTTTATTAATACTTTTTATTAAGTTGT
66 ATGCTTAAGTAGTTCAACAACCTTTATTAATACTTTTTATTAAGTTGT
*
68979235 TCAAATGAGTCCATCAATTTGAAGTGCCATTTTCATCAATAACCTGTCCAATGAAACTGAATTCA
1 TCAAATGAGTCCATCAATTTGAAGTACCATTTTCATCAATAACCTGTCCAATGAAACTGAATTCA
68979300 ATGCTTAAGTAGTTCAACAACCTTTATTAATAC
66 ATGCTTAAGTAGTTCAACAACCTTTATTAATAC
68979333 AATGAGTCTT
Statistics
Matches: 93, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
113 93 1.00
ACGTcount: A:0.33, C:0.19, G:0.11, T:0.36
Consensus pattern (113 bp):
TCAAATGAGTCCATCAATTTGAAGTACCATTTTCATCAATAACCTGTCCAATGAAACTGAATTCA
ATGCTTAAGTAGTTCAACAACCTTTATTAATACTTTTTATTAAGTTGT
Found at i:68979560 original size:6 final size:6
Alignment explanation
Indices: 68979549--68979605 Score: 66
Period size: 6 Copynumber: 10.0 Consensus size: 6
68979539 CTGTGAAATG
* *
68979549 GTTATT GTTATT GTTATT GTTATT ATTATT G---TT GTTGTT GTTATT
1 GTTATT GTTATT GTTATT GTTATT GTTATT GTTATT GTTATT GTTATT
*
68979594 GTTGTT GTTATT
1 GTTATT GTTATT
68979606 TTGCATTGTA
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
3 3 0.07
6 40 0.93
ACGTcount: A:0.14, C:0.00, G:0.19, T:0.67
Consensus pattern (6 bp):
GTTATT
Found at i:68984562 original size:16 final size:16
Alignment explanation
Indices: 68984541--68984586 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
68984531 AAATAGCCAC
*
68984541 TTTTTTGTCGTTTATG
1 TTTTTTTTCGTTTATG
* *
68984557 TTTTTTTTCTTTTATT
1 TTTTTTTTCGTTTATG
68984573 TATTTTTTTCGTTT
1 T-TTTTTTTCGTTT
68984587 GGTTTAATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
16 14 0.56
17 11 0.44
ACGTcount: A:0.07, C:0.07, G:0.09, T:0.78
Consensus pattern (16 bp):
TTTTTTTTCGTTTATG
Found at i:68993531 original size:53 final size:53
Alignment explanation
Indices: 68993474--68993593 Score: 195
Period size: 53 Copynumber: 2.3 Consensus size: 53
68993464 TATCCCAAAC
* *
68993474 ATGGTCTTATACGGAATCACATTATCACATTATACCGATGCCATAGCCTAGCT
1 ATGGTCTTATACGGAATCACATTATCACATTACACCGATGCCATAGCCCAGCT
* *
68993527 ATGGTCTTATACGGAGTCACATTATCACATTGCACCGATGCCATAGCCCAGCT
1 ATGGTCTTATACGGAATCACATTATCACATTACACCGATGCCATAGCCCAGCT
*
68993580 ATGGTCTTAAACGG
1 ATGGTCTTATACGG
68993594 GCGCACTTAT
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
53 62 1.00
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.28
Consensus pattern (53 bp):
ATGGTCTTATACGGAATCACATTATCACATTACACCGATGCCATAGCCCAGCT
Found at i:68997542 original size:55 final size:55
Alignment explanation
Indices: 68997478--68997619 Score: 131
Period size: 55 Copynumber: 2.6 Consensus size: 55
68997468 GTGCACGCCC
* * *
68997478 CACGCCCGTGTTAATTTGACAGGTTCGACCACGGGTGTTAGACACTGGCGTCTCG
1 CACGCCCGTGTTAATTTGACAGGTTCGACCACGGGTCTTACACACGGGCGTCTCG
* * * ** * * * *
68997533 CATGCCCGTGCTAGTTTCTCAGTTTCAACCACGGGTCTTCCACACGGGCGTGTCG
1 CACGCCCGTGTTAATTTGACAGGTTCGACCACGGGTCTTACACACGGGCGTCTCG
* ** * *
68997588 CACGCCCTTGTTGTTTTGGCAGGCTCGACCAC
1 CACGCCCGTGTTAATTTGACAGGTTCGACCAC
68997620 AGTTATGTCA
Statistics
Matches: 65, Mismatches: 22, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
55 65 1.00
ACGTcount: A:0.15, C:0.31, G:0.27, T:0.27
Consensus pattern (55 bp):
CACGCCCGTGTTAATTTGACAGGTTCGACCACGGGTCTTACACACGGGCGTCTCG
Found at i:69008656 original size:7 final size:7
Alignment explanation
Indices: 69008637--69008669 Score: 57
Period size: 7 Copynumber: 4.6 Consensus size: 7
69008627 AATTTCTTTT
69008637 TAAACCC
1 TAAACCC
69008644 TAAAACCC
1 T-AAACCC
69008652 TAAACCC
1 TAAACCC
69008659 TAAACCC
1 TAAACCC
69008666 TAAA
1 TAAA
69008670 AACTTTTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
7 18 0.72
8 7 0.28
ACGTcount: A:0.48, C:0.36, G:0.00, T:0.15
Consensus pattern (7 bp):
TAAACCC
Found at i:69009828 original size:50 final size:50
Alignment explanation
Indices: 69009767--69009870 Score: 199
Period size: 50 Copynumber: 2.1 Consensus size: 50
69009757 AGTTATATCA
*
69009767 TTTGTATTGTGAGGTTTTGGGGAGAGTGATTGTGACAACTTGGATTTGAC
1 TTTGTATTGTGAGGTTTTGAGGAGAGTGATTGTGACAACTTGGATTTGAC
69009817 TTTGTATTGTGAGGTTTTGAGGAGAGTGATTGTGACAACTTGGATTTGAC
1 TTTGTATTGTGAGGTTTTGAGGAGAGTGATTGTGACAACTTGGATTTGAC
69009867 TTTG
1 TTTG
69009871 GGGATGCAAT
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 53 1.00
ACGTcount: A:0.20, C:0.06, G:0.33, T:0.41
Consensus pattern (50 bp):
TTTGTATTGTGAGGTTTTGAGGAGAGTGATTGTGACAACTTGGATTTGAC
Found at i:69012947 original size:3 final size:3
Alignment explanation
Indices: 69012939--69012964 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
69012929 GGTTTATCAG
69012939 GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GA
69012965 TAAGGAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:69028016 original size:18 final size:20
Alignment explanation
Indices: 69027974--69028010 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
69027964 ATATTTTATG
*
69027974 ATTA-TTTAATTAGATATAT
1 ATTATTTTAATGAGATATAT
69027993 ATTATTTTAATGAGATAT
1 ATTATTTTAATGAGATAT
69028011 TTTATTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (20 bp):
ATTATTTTAATGAGATATAT
Found at i:69030223 original size:46 final size:46
Alignment explanation
Indices: 69030171--69030489 Score: 408
Period size: 46 Copynumber: 7.0 Consensus size: 46
69030161 AGTGTGCTCT
*
69030171 CTGATATGAAATGTGTAAGACCATAGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
69030217 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
69030263 CTGATATGAAACGTGTAAAACCATGTTTGAAAGATACCATGGC-AC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
69030308 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
69030354 TTGATATGAAACGTGTAAGACCATGGTTGAAAGATGCCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** ***
69030400 ATGACGGGAAATAAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
69030446 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
69030490 TCATGTCAAA
Statistics
Matches: 244, Mismatches: 27, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
45 43 0.18
46 201 0.82
ACGTcount: A:0.39, C:0.16, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:69030423 original size:137 final size:138
Alignment explanation
Indices: 69030171--69030489 Score: 417
Period size: 137 Copynumber: 2.3 Consensus size: 138
69030161 AGTGTGCTCT
*
69030171 CTGATATGAAATGTGTAAGACCATAGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
1 CTGATATGAAATGTGTAAGACCATAGTTGAAAGATACCATGGCAACCTGATATGAAACGTGTAAG
* * * * *** *
69030236 ACCATGGTTGAAAGATACCATGGCAGCCTGATATGAAACGTGTAAAACCATGTTTGAAAGATACC
66 ACCATGGTTGAAAGATACCATGGCAACATGACAGGAAACAAATAAAACCATGGTTGAAAGATACC
69030301 ATGGC-AC
131 ATGGCAAC
* * * *
69030308 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAGCTTGATATGAAACGTGTAAG
1 CTGATATGAAATGTGTAAGACCATAGTTGAAAGATACCATGGCAACCTGATATGAAACGTGTAAG
* * * *
69030373 ACCATGGTTGAAAGATGCCATGGCAACATGACGGGAAATAAATAAGACCATGGTTGAAAGATACC
66 ACCATGGTTGAAAGATACCATGGCAACATGACAGGAAACAAATAAAACCATGGTTGAAAGATACC
69030438 ATGGCAAC
131 ATGGCAAC
* * * * *
69030446 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATAGTTGAAAGATACCATGGCA
69030490 TCATGTCAAA
Statistics
Matches: 156, Mismatches: 24, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
137 119 0.76
138 37 0.24
ACGTcount: A:0.39, C:0.16, G:0.24, T:0.22
Consensus pattern (138 bp):
CTGATATGAAATGTGTAAGACCATAGTTGAAAGATACCATGGCAACCTGATATGAAACGTGTAAG
ACCATGGTTGAAAGATACCATGGCAACATGACAGGAAACAAATAAAACCATGGTTGAAAGATACC
ATGGCAAC
Found at i:69032401 original size:43 final size:44
Alignment explanation
Indices: 69032313--69032407 Score: 113
Period size: 44 Copynumber: 2.2 Consensus size: 44
69032303 AGGATACGCG
* ** * *
69032313 AATATTGATACCATTGTCCCAAATGGTGGTCTTACATGTAATCA
1 AATATCGATACCATTGTCCCAAACAGTGGTCTTACACGAAATCA
* *
69032357 AATATCGATACCATTGTCCCAGACAG-GGTCTTAGACGAAATCA
1 AATATCGATACCATTGTCCCAAACAGTGGTCTTACACGAAATCA
69032400 AATA-CGAT
1 AATATCGAT
69032408 GCCAACGTCT
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
42 4 0.09
43 18 0.41
44 22 0.50
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (44 bp):
AATATCGATACCATTGTCCCAAACAGTGGTCTTACACGAAATCA
Found at i:69038614 original size:21 final size:22
Alignment explanation
Indices: 69038585--69038631 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
69038575 CAGAAGGAGT
*
69038585 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
69038607 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
69038628 GAGT
1 GAGT
69038632 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:69046003 original size:28 final size:28
Alignment explanation
Indices: 69045963--69046171 Score: 120
Period size: 28 Copynumber: 7.5 Consensus size: 28
69045953 TCTACAGAAT
* *
69045963 AGATAGACCTTGGAGGTCATTCCACATA
1 AGATAGTCCTTGGAGGACATTCCACATA
* * * **
69045991 AGATAGTCTTTGGCGGACTTTCCATGTA
1 AGATAGTCCTTGGAGGACATTCCACATA
* *
69046019 AGATATTCCTTGGCA-GACTTTCCACATA
1 AGATAGTCCTTGG-AGGACATTCCACATA
* * * **
69046047 AGATAGTCATTGGCGGGCATTCCATGTA
1 AGATAGTCCTTGGAGGACATTCCACATA
** * *
69046075 AGATAGT-CTTTAACGGACTTTCCACGTA
1 AGATAGTCCTTGGA-GGACATTCCACATA
* * * *
69046103 AGATAGTCATTAGCA-GACTTTCCAAATA
1 AGATAGTCCTT-GGAGGACATTCCACATA
* * * *
69046131 AGATAGTCTTTCGTA-AACTTTCCACATA
1 AGATAGTCCTT-GGAGGACATTCCACATA
69046159 AGATAGTCCTTGG
1 AGATAGTCCTTGG
69046172 TAGGCTTCCC
Statistics
Matches: 138, Mismatches: 38, Indels: 11
0.74 0.20 0.06
Matches are distributed among these distances:
27 3 0.02
28 132 0.96
29 2 0.01
30 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (28 bp):
AGATAGTCCTTGGAGGACATTCCACATA
Found at i:69046030 original size:56 final size:56
Alignment explanation
Indices: 69045980--69046171 Score: 177
Period size: 56 Copynumber: 3.4 Consensus size: 56
69045970 CCTTGGAGGT
* *
69045980 CATTCCACATAAGATAGTCTTTGGCGGACTTTCCATGTAAGATATTCCTTGGCAGA
1 CATTCCACATAAGATAGTCATTGGCGGACATTCCATGTAAGATATTCCTTGGCAGA
* * * * ** *
69046036 CTTTCCACATAAGATAGTCATTGGCGGGCATTCCATGTAAGATAGTCTTTAACGGA
1 CATTCCACATAAGATAGTCATTGGCGGACATTCCATGTAAGATATTCCTTGGCAGA
* * * * * ** * * * * *
69046092 CTTTCCACGTAAGATAGTCATTAGCAGACTTTCCAAATAAGATAGTCTTTCGTAAA
1 CATTCCACATAAGATAGTCATTGGCGGACATTCCATGTAAGATATTCCTTGGCAGA
* *
69046148 CTTTCCACATAAGATAGTCCTTGG
1 CATTCCACATAAGATAGTCATTGG
69046172 TAGGCTTCCC
Statistics
Matches: 112, Mismatches: 24, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
56 112 1.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (56 bp):
CATTCCACATAAGATAGTCATTGGCGGACATTCCATGTAAGATATTCCTTGGCAGA
Found at i:69046030 original size:84 final size:84
Alignment explanation
Indices: 69045936--69046136 Score: 215
Period size: 84 Copynumber: 2.4 Consensus size: 84
69045926 CCCCTCATTT
* * * *
69045936 GATAGTCCTTGGTAGGCTCTACAGAAT-AGATAGACCTTGGAGGTCATTCCACATAAGATAGTCT
1 GATAGTCCTTGGCAGACTCTACA-AATAAGATAGACATTGGAGGGCATTCCACATAAGATAGTCT
** *
69046000 TTGGCGGACTTTCCATGTAA
65 TTAACGGACTTTCCACGTAA
* * * * * * **
69046020 GATATTCCTTGGCAGACTTTCCACATAAGATAGTCATTGGCGGGCATTCCATGTAAGATAGTCTT
1 GATAGTCCTTGGCAGACTCTACAAATAAGATAGACATTGGAGGGCATTCCACATAAGATAGTCTT
69046085 TAACGGACTTTCCACGTAA
66 TAACGGACTTTCCACGTAA
* * * *
69046104 GATAGTCATTAGCAGACTTTCCAAATAAGATAG
1 GATAGTCCTTGGCAGACTCTACAAATAAGATAG
69046137 TCTTTCGTAA
Statistics
Matches: 97, Mismatches: 19, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
83 2 0.02
84 95 0.98
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.30
Consensus pattern (84 bp):
GATAGTCCTTGGCAGACTCTACAAATAAGATAGACATTGGAGGGCATTCCACATAAGATAGTCTT
TAACGGACTTTCCACGTAA
Found at i:69046137 original size:84 final size:84
Alignment explanation
Indices: 69045980--69046138 Score: 237
Period size: 84 Copynumber: 1.9 Consensus size: 84
69045970 CCTTGGAGGT
** * * * * *
69045980 CATTCCACATAAGATAGTCTTTGGCGGACTTTCCATGTAAGATATTCCTTGGCAGACTTTCCACA
1 CATTCCACATAAGATAGTCTTTAACGGACTTTCCACGTAAGATAGTCATTAGCAGACTTTCCAAA
69046045 TAAGATAGTCATTGGCGGG
66 TAAGATAGTCATTGGCGGG
**
69046064 CATTCCATGTAAGATAGTCTTTAACGGACTTTCCACGTAAGATAGTCATTAGCAGACTTTCCAAA
1 CATTCCACATAAGATAGTCTTTAACGGACTTTCCACGTAAGATAGTCATTAGCAGACTTTCCAAA
69046129 TAAGATAGTC
66 TAAGATAGTC
69046139 TTTCGTAAAC
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
84 66 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.31
Consensus pattern (84 bp):
CATTCCACATAAGATAGTCTTTAACGGACTTTCCACGTAAGATAGTCATTAGCAGACTTTCCAAA
TAAGATAGTCATTGGCGGG
Found at i:69046154 original size:84 final size:84
Alignment explanation
Indices: 69045980--69046166 Score: 230
Period size: 84 Copynumber: 2.2 Consensus size: 84
69045970 CCTTGGAGGT
** * * * * *
69045980 CATTCCACATAAGATAGTCTTTGGCGGACTTTCCATGTAAGATATTCCTTGGCAGACTTTCCACA
1 CATTCCACATAAGATAGTCTTTAACGGACTTTCCACGTAAGATAGTCATTAGCAGACTTTCCAAA
* ***
69046045 TAAGATAGTCATTGGCGGG
66 TAAGATAGTCATTCGCAAA
**
69046064 CATTCCATGTAAGATAGTCTTTAACGGACTTTCCACGTAAGATAGTCATTAGCAGACTTTCCAAA
1 CATTCCACATAAGATAGTCTTTAACGGACTTTCCACGTAAGATAGTCATTAGCAGACTTTCCAAA
* *
69046129 TAAGATAGTCTTTCGTAAA
66 TAAGATAGTCATTCGCAAA
*
69046148 CTTTCCACATAAGATAGTC
1 CATTCCACATAAGATAGTC
69046167 CTTGGTAGGC
Statistics
Matches: 85, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
84 85 1.00
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.32
Consensus pattern (84 bp):
CATTCCACATAAGATAGTCTTTAACGGACTTTCCACGTAAGATAGTCATTAGCAGACTTTCCAAA
TAAGATAGTCATTCGCAAA
Found at i:69048823 original size:39 final size:39
Alignment explanation
Indices: 69048769--69048847 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
69048759 CAAACGACTG
*
69048769 ATCTTCTAAGGAAACCCTACACAACACTTAATTAATCAT
1 ATCTTATAAGGAAACCCTACACAACACTTAATTAATCAT
69048808 ATCTTATAAGGAAACCCTACACAACACTTAATTAATCAT
1 ATCTTATAAGGAAACCCTACACAACACTTAATTAATCAT
69048847 A
1 A
69048848 CCTTCACTCG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.43, C:0.24, G:0.05, T:0.28
Consensus pattern (39 bp):
ATCTTATAAGGAAACCCTACACAACACTTAATTAATCAT
Found at i:69050118 original size:18 final size:18
Alignment explanation
Indices: 69050095--69050129 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
69050085 CAAGAACTAT
69050095 AAGCATCAAAATAGTTTC
1 AAGCATCAAAATAGTTTC
*
69050113 AAGCATGAAAATAGTTT
1 AAGCATCAAAATAGTTT
69050130 GACACATCGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.46, C:0.11, G:0.14, T:0.29
Consensus pattern (18 bp):
AAGCATCAAAATAGTTTC
Found at i:69071991 original size:13 final size:12
Alignment explanation
Indices: 69071978--69072012 Score: 54
Period size: 11 Copynumber: 2.9 Consensus size: 12
69071968 TTTAAAAATA
69071978 AAATTATTTTAT
1 AAATTATTTTAT
69071990 -AATTATTTGTAT
1 AAATTATTT-TAT
69072002 AAATTATTTTA
1 AAATTATTTTA
69072013 GAATTTGTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
11 8 0.38
12 5 0.24
13 8 0.38
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (12 bp):
AAATTATTTTAT
Found at i:69071995 original size:11 final size:11
Alignment explanation
Indices: 69071979--69072017 Score: 51
Period size: 11 Copynumber: 3.4 Consensus size: 11
69071969 TTAAAAATAA
69071979 AATTATTTTAT
1 AATTATTTTAT
69071990 AATTATTTGTAT
1 AATTATTT-TAT
*
69072002 AAATTATTTTAG
1 -AATTATTTTAT
69072014 AATT
1 AATT
69072018 TGTCTGTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
11 12 0.48
12 5 0.20
13 8 0.32
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.56
Consensus pattern (11 bp):
AATTATTTTAT
Found at i:69076060 original size:36 final size:36
Alignment explanation
Indices: 69076020--69076152 Score: 109
Period size: 36 Copynumber: 3.8 Consensus size: 36
69076010 TAAGAACTTA
*
69076020 AGAAGA-TCCGATATCTCGTTTAGGATCTTGGGATTG
1 AGAAGACT-CGATATCTCGTTTAGGAGCTTGGGATTG
*
69076056 AGAAGACTTGATATCTCGTTTAGGAGCTT--G---G
1 AGAAGACTCGATATCTCGTTTAGGAGCTTGGGATTG
* * * *
69076087 -GAAGACTCTATATATTGCGTTTAGCAACTTGGGATTG
1 AGAAGACTCGATAT-CT-CGTTTAGGAGCTTGGGATTG
* * *
69076124 AGAAGACTTGATATCTCATTCAGGAGCTT
1 AGAAGACTCGATATCTCGTTTAGGAGCTT
69076153 AGGAAGATTT
Statistics
Matches: 74, Mismatches: 14, Indels: 18
0.70 0.13 0.17
Matches are distributed among these distances:
30 11 0.15
31 2 0.03
32 11 0.15
34 2 0.03
36 34 0.46
37 3 0.04
38 11 0.15
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (36 bp):
AGAAGACTCGATATCTCGTTTAGGAGCTTGGGATTG
Found at i:69084132 original size:44 final size:45
Alignment explanation
Indices: 69084069--69084490 Score: 172
Period size: 44 Copynumber: 9.1 Consensus size: 45
69084059 CATTGTGGTG
* * * * *
69084069 AATCTTATCTCCTTGAAGTTGTAGTGGAATAGATT-ATAGCCA-CA
1 AATCTTATCTCCCTAAAGTTGCAGTGGAACAGATTGA-AGACAGCA
* * * * *
69084113 AATCTTATCTCCCTAAAGTTACAGTAGAGCAGATTGAAGATAGTA
1 AATCTTATCTCCCTAAAGTTGCAGTGGAACAGATTGAAGACAGCA
* * **
69084158 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATAGTG
1 AATCTTATCTCCCTAAAGTTGCAGTGGAACAGATTGAAGACAGCA
* *** * * * * * *
69084203 AATCTTATTTTTTTGAAGTTGCAATGAAATAGATTAAAGCTACAAGTTATA
1 AATCTTATCTCCCTAAAGTTGCAGTGGAACAGATTGAAG--AC-AG---CA
* * * * *
69084254 AACCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCA
1 AATCTTATCTCCCTAAAGTTGCAGTGGAACAGATTGAAGACAGCA
* * * ** * *
69084299 AATCTT-TTTTCCTGAAGTTAAAGTGGAACAGATTAAAGCTTCAAGTTACA
1 AATCTTATCTCCCTAAAGTTGCAGTGGAACAGATTGAAG--AC-AG---CA
* * * * *
69084349 AATCTTATCTACCTAAAGTTGCAGTAGG-TCAGATTAAATCTACAGTGGA
1 AATCTTATCTCCCTAAAGTTGCAGT-GGAACAGATTGAA--GACA--GCA
* * **
69084398 GAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA-CA
1 -AATCTTATCTCCCTAAAGTTGCAGTGGAACAGATTGAAGACAGCA
* * * * * *
69084443 AATCTTATCTCCCTGAAGTTGTAGCGGAGCAGATTAAAG-CAACA
1 AATCTTATCTCCCTAAAGTTGCAGTGGAACAGATTGAAGACAGCA
69084487 AATC
1 AATC
69084491 CTATACCTTT
Statistics
Matches: 287, Mismatches: 68, Indels: 46
0.72 0.17 0.11
Matches are distributed among these distances:
43 1 0.00
44 99 0.34
45 80 0.28
47 3 0.01
48 5 0.02
49 4 0.01
50 40 0.14
51 52 0.18
52 3 0.01
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.31
Consensus pattern (45 bp):
AATCTTATCTCCCTAAAGTTGCAGTGGAACAGATTGAAGACAGCA
Found at i:69084222 original size:45 final size:45
Alignment explanation
Indices: 69084112--69084477 Score: 182
Period size: 45 Copynumber: 7.8 Consensus size: 45
69084102 TTATAGCCAC
*
69084112 AAATCTTATCTCCCTAAAGTTACAGTAGAGCAGATTGAAGATAGT
1 AAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTGAAGATAGT
*
69084157 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATAGT
1 AAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTGAAGATAGT
* * *** * * ** * *
69084202 GAATCTTATTTTTTTGAAGTTGCAAT-GAAATAGATTAAAGCTACAAGTTAT
1 AAATCTTATCTCCCTAAAGTTGCAGTAG-AGCAGATTGAAG--A-TAG---T
* * * * *
69084253 AAACCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGC
1 AAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTGAAGATAGT
* * * ** * * * *
69084298 AAATCTT-TTTTCCTGAAGTTAAAGTGGAACAGATTAAAGCTTCAAGTT
1 AAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTGAAG-AT--AG-T
* * * *
69084346 ACAAATCTTATCTACCTAAAGTTGCAGTAG-GTCAGATTAAATCTACAGT
1 --AAATCTTATCTCCCTAAAGTTGCAGTAGAG-CAGATTGAA--GATAGT
* * * *
69084395 GGAGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA-C
1 --A-AATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTGAAGATAGT
* * **
69084442 AAATCTTATCTCCCTGAAGTTGTAGCGGAGCAGATT
1 AAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATT
69084478 AAAGCAACAA
Statistics
Matches: 244, Mismatches: 57, Indels: 41
0.71 0.17 0.12
Matches are distributed among these distances:
44 60 0.25
45 79 0.32
47 3 0.01
48 5 0.02
49 3 0.01
50 41 0.17
51 52 0.21
52 1 0.00
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (45 bp):
AAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTGAAGATAGT
Found at i:69084383 original size:95 final size:96
Alignment explanation
Indices: 69084157--69084373 Score: 294
Period size: 95 Copynumber: 2.3 Consensus size: 96
69084147 TGAAGATAGT
** **
69084157 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATAGTGAATCTTATTTTTTTGAAGT
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATTTTCCTGAAGT
* * *
69084222 TGCAATGAAATAGATTAAAGCTACAAGTTAT
66 TGAAATGAAACAGATTAAAGCTACAAGTTAC
* * *
69084253 AAACCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTT-TTTTCCTGAAGT
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATTTTCCTGAAGT
* *
69084317 T-AAAGTGGAACAGATTAAAGCTTCAAGTTAC
66 TGAAA-TGAAACAGATTAAAGCTACAAGTTAC
*
69084348 AAATCTTATCTACCTAAAGTTGCAGT
1 AAATCTTATCTCCCTAAAGTTGCAGT
69084374 AGGTCAGATT
Statistics
Matches: 104, Mismatches: 16, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
94 2 0.02
95 55 0.53
96 47 0.45
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.32
Consensus pattern (96 bp):
AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATTTTCCTGAAGT
TGAAATGAAACAGATTAAAGCTACAAGTTAC
Found at i:69086259 original size:15 final size:16
Alignment explanation
Indices: 69086231--69086266 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
69086221 CATCGAACAT
69086231 CTATTTATTTATTTTA
1 CTATTTATTTATTTTA
69086247 CTATTTA-TTATTTTA
1 CTATTTATTTATTTTA
*
69086262 TTATT
1 CTATT
69086267 ATCTATTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 12 0.63
16 7 0.37
ACGTcount: A:0.25, C:0.06, G:0.00, T:0.69
Consensus pattern (16 bp):
CTATTTATTTATTTTA
Found at i:69086273 original size:15 final size:14
Alignment explanation
Indices: 69086239--69086287 Score: 50
Period size: 15 Copynumber: 3.6 Consensus size: 14
69086229 ATCTATTTAT
*
69086239 TTATTTTACTATTTA
1 TTATTTTATTA-TTA
69086254 TTATTTTATTATTA
1 TTATTTTATTATTA
69086268 TCTA-TTTA-T-TTA
1 T-TATTTTATTATTA
69086280 TTATTTTA
1 TTATTTTA
69086288 ATTTTTAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
11 2 0.06
12 8 0.26
13 1 0.03
14 8 0.26
15 12 0.39
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.69
Consensus pattern (14 bp):
TTATTTTATTATTA
Found at i:69086408 original size:7 final size:7
Alignment explanation
Indices: 69086396--69086425 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
69086386 GCACCTTTCA
69086396 TTTTTAT
1 TTTTTAT
69086403 TTTTTAT
1 TTTTTAT
69086410 TTTTTA-
1 TTTTTAT
69086416 TTTTTAT
1 TTTTTAT
69086423 TTT
1 TTT
69086426 AAATTACCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.27
7 16 0.73
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (7 bp):
TTTTTAT
Found at i:69086413 original size:13 final size:14
Alignment explanation
Indices: 69086396--69086425 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
69086386 GCACCTTTCA
69086396 TTTTTATTTTTTAT
1 TTTTTATTTTTTAT
69086410 TTTTTA-TTTTTAT
1 TTTTTATTTTTTAT
69086423 TTT
1 TTT
69086426 AAATTACCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.62
14 6 0.38
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (14 bp):
TTTTTATTTTTTAT
Found at i:69098756 original size:20 final size:20
Alignment explanation
Indices: 69098733--69098788 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
69098723 TGCTAATAAT
*
69098733 GGCACCAAAGTGCAATCAGG
1 GGCACCAAAGTGCAAACAGG
** *
69098753 GGCACTGAAGTGTAAACAGG
1 GGCACCAAAGTGCAAACAGG
69098773 GGCACCAAAGTGCAAA
1 GGCACCAAAGTGCAAA
69098789 TATATAGACA
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.38, C:0.21, G:0.30, T:0.11
Consensus pattern (20 bp):
GGCACCAAAGTGCAAACAGG
Found at i:69099829 original size:3 final size:3
Alignment explanation
Indices: 69099821--69099873 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
69099811 TATTTTAACA
69099821 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
69099869 TAT TA
1 TAT TA
69099874 AAGCATAATG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:69101236 original size:16 final size:15
Alignment explanation
Indices: 69101203--69101237 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
69101193 AAATATTTTT
*
69101203 TAATTTTTAATTATA
1 TAATTTTTAATAATA
69101218 TAATTTTTAATAATAA
1 TAATTTTTAATAAT-A
69101234 TAAT
1 TAAT
69101238 CAAATATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 13 0.72
16 5 0.28
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
TAATTTTTAATAATA
Found at i:69105734 original size:23 final size:23
Alignment explanation
Indices: 69105686--69105732 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
69105676 TAATACATAA
*
69105686 TTAATTTTTTATAATTTTTTTAT
1 TTAATTTTTTATAATATTTTTAT
*
69105709 TTAA-TTTTTATTATATTTTTAT
1 TTAATTTTTTATAATATTTTTAT
69105731 TT
1 TT
69105733 TAGTCACTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 18 0.82
23 4 0.18
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (23 bp):
TTAATTTTTTATAATATTTTTAT
Found at i:69118785 original size:25 final size:24
Alignment explanation
Indices: 69118753--69118800 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
69118743 TTAAGTTCAT
* *
69118753 TTTCATATCATTTTTGTTATTTTA
1 TTTCATATCATTATTATTATTTTA
*
69118777 TTTCTATATTATTATTATTATTTT
1 TTTC-ATATCATTATTATTATTTT
69118801 TATTATTCCT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.23, C:0.06, G:0.02, T:0.69
Consensus pattern (24 bp):
TTTCATATCATTATTATTATTTTA
Found at i:69119078 original size:22 final size:25
Alignment explanation
Indices: 69119045--69119096 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 25
69119035 CATACTTTTG
69119045 TTGTTATGTAT-ATA-TTT-TAATA
1 TTGTTATGTATAATATTTTATAATA
69119067 TTGTTA-GTTATAAATATTTTATAATA
1 TTGTTATG-TAT-AATATTTTATAATA
69119093 TTGT
1 TTGT
69119097 ATGCATATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
21 1 0.04
22 9 0.36
24 3 0.12
25 3 0.12
26 9 0.36
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.58
Consensus pattern (25 bp):
TTGTTATGTATAATATTTTATAATA
Found at i:69124407 original size:10 final size:10
Alignment explanation
Indices: 69124388--69124447 Score: 77
Period size: 10 Copynumber: 6.0 Consensus size: 10
69124378 TTAAATTTTA
69124388 AAAGATAAAT
1 AAAGATAAAT
69124398 ACAA-ATAAAT
1 A-AAGATAAAT
*
69124408 AAAGATAATT
1 AAAGATAAAT
*
69124418 AAAGATAATT
1 AAAGATAAAT
69124428 AAAGATAAAT
1 AAAGATAAAT
*
69124438 AAAAATAAAT
1 AAAGATAAAT
69124448 CCTAAATTTA
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
9 2 0.04
10 41 0.91
11 2 0.04
ACGTcount: A:0.68, C:0.02, G:0.07, T:0.23
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:69125083 original size:8 final size:7
Alignment explanation
Indices: 69125056--69125082 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
69125046 TCATATGTCT
69125056 TTTTTTC
1 TTTTTTC
69125063 TTTTTTC
1 TTTTTTC
69125070 TTTTTTC
1 TTTTTTC
69125077 TTTTTT
1 TTTTTT
69125083 TAATTTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (7 bp):
TTTTTTC
Found at i:69125269 original size:96 final size:97
Alignment explanation
Indices: 69125100--69125290 Score: 258
Period size: 96 Copynumber: 2.0 Consensus size: 97
69125090 ATTTAATTTA
* * * * *
69125100 TTTATTTTTACTGAGGAATATATTGAACTTTTTGACGCGAAGAGAGATGACAGCCAAGCACCCCA
1 TTTATTTTTACTGAAGAACATATCGAACCTTTTGACGCGAAGAGAGATGACAGCCAAACACCCCA
*
69125165 CCCCAGTTACTCAGCCCAACATACTCTTAATT
66 ACCCAGTTACTCAGCCCAACATACTCTTAATT
* * * *
69125197 TTTATTTTT-CTTAAGAACATATCGAACCTTTTGACGCGAAGAGAGATGACAGTCAAACTCCTCA
1 TTTATTTTTACTGAAGAACATATCGAACCTTTTGACGCGAAGAGAGATGACAGCCAAACACCCCA
* * *
69125261 ACCTAGTTACTTAGCCCAACATATTCTTAA
66 ACCCAGTTACTCAGCCCAACATACTCTTAA
69125291 AAATTAATTC
Statistics
Matches: 81, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
96 72 0.89
97 9 0.11
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (97 bp):
TTTATTTTTACTGAAGAACATATCGAACCTTTTGACGCGAAGAGAGATGACAGCCAAACACCCCA
ACCCAGTTACTCAGCCCAACATACTCTTAATT
Found at i:69126404 original size:13 final size:13
Alignment explanation
Indices: 69126386--69126436 Score: 50
Period size: 13 Copynumber: 3.8 Consensus size: 13
69126376 ATAAAGTAAT
69126386 AAATAATAAAATA
1 AAATAATAAAATA
69126399 AAATAATAAATACTA
1 AAATAATAAA-A-TA
*
69126414 ATAA-AATGAAATA
1 A-AATAATAAAATA
*
69126427 AGATAATAAA
1 AAATAATAAA
69126437 TTATAAAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
12 1 0.03
13 18 0.58
14 2 0.06
15 8 0.26
16 2 0.06
ACGTcount: A:0.71, C:0.02, G:0.04, T:0.24
Consensus pattern (13 bp):
AAATAATAAAATA
Found at i:69126419 original size:23 final size:20
Alignment explanation
Indices: 69126373--69126436 Score: 69
Period size: 20 Copynumber: 3.1 Consensus size: 20
69126363 TCAATATCCA
*
69126373 AAAATAAAGTAATAAATAAT
1 AAAATAAAATAATAAATAAT
*
69126393 AAAATAAAATAATAAATACT
1 AAAATAAAATAATAAATAAT
69126413 --AATAAAATGAAATAAGATAAT
1 AAAATAAAAT--AATAA-ATAAT
69126434 AAA
1 AAA
69126437 TTATAAAAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
18 8 0.22
20 23 0.64
21 4 0.11
23 1 0.03
ACGTcount: A:0.70, C:0.02, G:0.05, T:0.23
Consensus pattern (20 bp):
AAAATAAAATAATAAATAAT
Found at i:69150314 original size:47 final size:49
Alignment explanation
Indices: 69150155--69150380 Score: 214
Period size: 50 Copynumber: 4.7 Consensus size: 49
69150145 GGTATAATGC
* * *
69150155 CGATGCCATGTCCCAGAAATGGTCTT-CACTGA-T-TCATCCAT-CAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCA-CAATCCAAAT
* * * * **
69150201 CGATGCCATGTCCCTGGCATGGTCTTATATTGACTCTCACATATCCATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCACA-ATCCAAAT
*
69150251 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-C-AT-CAAAT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTC-TCACAATCCAAAT
* * * * * *
69150298 CGGTGCCATGACCCAGACATGGTCTAACACTGACTCTCGCATATCCGAAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCACA-ATCCAAAT
*
69150348 CGATGCCATGTACCAGACATGGTCTTACACTGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGA
69150381 TACATTTTGT
Statistics
Matches: 146, Mismatches: 24, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
46 25 0.17
47 40 0.27
48 4 0.03
49 7 0.05
50 68 0.47
51 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.27
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCACAATCCAAAT
Found at i:69150320 original size:97 final size:97
Alignment explanation
Indices: 69150154--69150380 Score: 296
Period size: 97 Copynumber: 2.4 Consensus size: 97
69150144 AGGTATAATG
* * * * * *
69150154 CCGATGCCATGTCCCAGAAATGGTCTT-CACTGATTCATCCATCAAGTCGATGCCATGTCCCTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCCATCAAATCGATGCCATGACCCAGA
* * * *
69150218 CATGGTCTTATATTGACTCTCACATATCC-ATG
66 CATGGTCTAACACTGACTCTCACATATCCGA-A
* * *
69150250 TCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAATCGGTGCCATGACCCAGA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCCATCAAATCGATGCCATGACCCAGA
*
69150315 CATGGTCTAACACTGACTCTCGCATATCCGAA
66 CATGGTCTAACACTGACTCTCACATATCCGAA
*
69150347 CCGATGCCATGTACCAGACATGGTCTTACACTGA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGA
69150381 TACATTTTGT
Statistics
Matches: 112, Mismatches: 17, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
96 25 0.22
97 86 0.77
98 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (97 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCCATCAAATCGATGCCATGACCCAGA
CATGGTCTAACACTGACTCTCACATATCCGAA
Found at i:69150446 original size:45 final size:47
Alignment explanation
Indices: 69150154--69150467 Score: 184
Period size: 50 Copynumber: 6.7 Consensus size: 47
69150144 AGGTATAATG
* *
69150154 CCGATGCCATGTCCCAGAAATGGTCTT-CACT-GATT-CATCCATC-AA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACAT-C-TCGAA
* * * * * * * * *
69150199 GTCGATGCCATGTCCCTGGCATGGTCTTATATTGACTCTCACATATCCATG
1 -CCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-T-ACATCTCGA-A
* *
69150250 TCGATGCCATGTCCCAGACATGGTCTTACACTGGC-T-CATCCATCAAA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACAT-C-TCGAA
* * * * * * *
69150297 TCGGTGCCATGACCCAGACATGGTCTAACACTGACTCTCGCATATCCGAA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-T-ACATCT-CGAA
* * * * *
69150347 CCGATGCCATGTACCAGACATGGTCTTACACT-G-ATACATTTTGTAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCG-AA
* *
69150393 CCAATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCGAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAA
*
69150438 CCGGTG-CATGTCCCAGACAT-GTCTTACACT
1 CCGATGCCATGTCCCAGACATGGTCTTACACT
69150468 AGCTCTCGTC
Statistics
Matches: 209, Mismatches: 42, Indels: 35
0.73 0.15 0.12
Matches are distributed among these distances:
44 10 0.05
45 45 0.22
46 43 0.21
47 34 0.16
48 5 0.02
49 5 0.02
50 61 0.29
51 6 0.03
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.27
Consensus pattern (47 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAA
Found at i:69152069 original size:10 final size:10
Alignment explanation
Indices: 69152048--69152099 Score: 59
Period size: 10 Copynumber: 5.1 Consensus size: 10
69152038 AATTAAATTC
69152048 TAAAAGATAAA
1 TAAAA-ATAAA
69152059 TAAAAATAAA
1 TAAAAATAAA
* *
69152069 TAAAGATAAT
1 TAAAAATAAA
*
69152079 TAAAGATAAA
1 TAAAAATAAA
*
69152089 TGAAAATAAA
1 TAAAAATAAA
69152099 T
1 T
69152100 CCTAAAGTTA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
10 31 0.86
11 5 0.14
ACGTcount: A:0.69, C:0.00, G:0.08, T:0.23
Consensus pattern (10 bp):
TAAAAATAAA
Found at i:69152073 original size:20 final size:21
Alignment explanation
Indices: 69152050--69152099 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 21
69152040 TTAAATTCTA
69152050 AAAGATAAATAAAAATAAAT-
1 AAAGATAAATAAAAATAAATG
* *
69152070 AAAGATAATTAAAGATAAATG
1 AAAGATAAATAAAAATAAATG
69152091 AAA-ATAAAT
1 AAAGATAAAT
69152100 CCTAAAGTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 23 0.88
21 3 0.12
ACGTcount: A:0.70, C:0.00, G:0.08, T:0.22
Consensus pattern (21 bp):
AAAGATAAATAAAAATAAATG
Found at i:69152942 original size:93 final size:93
Alignment explanation
Indices: 69152774--69152947 Score: 276
Period size: 93 Copynumber: 1.9 Consensus size: 93
69152764 TTTATGTTTA
* *
69152774 CTTAGGAATATATTAAACCTTTTGACTCAAAGAGAGATGACAGCCAAACACCCCACCCCGGTTAC
1 CTTAAGAACATATTAAACCTTTTGACTCAAAGAGAGATGACAGCCAAACACCCCACCCCGGTTAC
69152839 TCAGCCCAACACATTCCTAATTTTTTTT
66 TCAGCCCAACACATTCCTAATTTTTTTT
* ** * * *
69152867 CTTAAGAACATATTGAACCTTTTGACTTGAAGAGAGATGATAGCCAAGCACCTCACCCCGGTTAC
1 CTTAAGAACATATTAAACCTTTTGACTCAAAGAGAGATGACAGCCAAACACCCCACCCCGGTTAC
69152932 TCAGCCCAACACATTC
66 TCAGCCCAACACATTC
69152948 TTAAAAATTA
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.26
Consensus pattern (93 bp):
CTTAAGAACATATTAAACCTTTTGACTCAAAGAGAGATGACAGCCAAACACCCCACCCCGGTTAC
TCAGCCCAACACATTCCTAATTTTTTTT
Found at i:69153848 original size:21 final size:21
Alignment explanation
Indices: 69153822--69153904 Score: 73
Period size: 21 Copynumber: 4.0 Consensus size: 21
69153812 AATAATTATG
*
69153822 TAATAAATCATT-AAGATAAAA
1 TAATAAAT-ATTAAAAATAAAA
69153843 TAATAAATATTAAAAATAAAA
1 TAATAAATATTAAAAATAAAA
*
69153864 TAATAAA-AAT-AAAATAAAGA
1 TAATAAATATTAAAAATAAA-A
* * *
69153884 AAAGTAAAAATAAAAAATAAA
1 TAA-TAAATATTAAAAATAAA
69153905 GAGAAATAAA
Statistics
Matches: 52, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
19 8 0.15
20 8 0.15
21 27 0.52
22 1 0.02
23 8 0.15
ACGTcount: A:0.72, C:0.01, G:0.04, T:0.23
Consensus pattern (21 bp):
TAATAAATATTAAAAATAAAA
Found at i:69153860 original size:13 final size:13
Alignment explanation
Indices: 69153844--69153904 Score: 54
Period size: 14 Copynumber: 4.5 Consensus size: 13
69153834 AAGATAAAAT
*
69153844 AATAAATATTAAA
1 AATAAATAATAAA
69153857 AATAAAATAATAAA
1 AAT-AAATAATAAA
69153871 AATAAAATAA-AGAA
1 AAT-AAATAATA-AA
69153885 AAGTAAA-AATAAAA
1 AA-TAAATAAT-AAA
69153899 AATAAA
1 AATAAA
69153905 GAGAAATAAA
Statistics
Matches: 42, Mismatches: 1, Indels: 10
0.79 0.02 0.19
Matches are distributed among these distances:
13 10 0.24
14 30 0.71
15 2 0.05
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (13 bp):
AATAAATAATAAA
Found at i:69153870 original size:14 final size:14
Alignment explanation
Indices: 69153847--69153880 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
69153837 ATAAAATAAT
*
69153847 AAATATTAAAAATA
1 AAATAATAAAAATA
69153861 AAATAATAAAAATA
1 AAATAATAAAAATA
69153875 AAATAA
1 AAATAA
69153881 AGAAAAGTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (14 bp):
AAATAATAAAAATA
Found at i:69153886 original size:14 final size:13
Alignment explanation
Indices: 69153854--69153904 Score: 59
Period size: 14 Copynumber: 3.7 Consensus size: 13
69153844 AATAAATATT
69153854 AAAAATAAAATAA
1 AAAAATAAAATAA
69153867 TAAAAATAAAATAA
1 -AAAAATAAAATAA
69153881 AGAAAAGTAAAA-ATA
1 A-AAAA-TAAAATA-A
69153896 AAAAATAAA
1 AAAAATAAA
69153905 GAGAAATAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
13 5 0.15
14 22 0.65
15 7 0.21
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.16
Consensus pattern (13 bp):
AAAAATAAAATAA
Found at i:69153900 original size:23 final size:21
Alignment explanation
Indices: 69153844--69153917 Score: 80
Period size: 23 Copynumber: 3.4 Consensus size: 21
69153834 AAGATAAAAT
* *
69153844 AATAAATATTAAAAATAAA-AT
1 AATAAA-AATAAAAATAAAGAA
69153865 AATAAAAAT-AAAATAAAGAA
1 AATAAAAATAAAAATAAAGAA
69153885 AAGTAAAAATAAAAAATAAAGAGA
1 AA-TAAAAAT-AAAAATAAAGA-A
69153909 AATAAAAAT
1 AATAAAAAT
69153918 TGGGTTGCCT
Statistics
Matches: 46, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
19 8 0.17
20 5 0.11
21 13 0.28
23 17 0.37
24 3 0.07
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.19
Consensus pattern (21 bp):
AATAAAAATAAAAATAAAGAA
Found at i:69157409 original size:10 final size:10
Alignment explanation
Indices: 69157388--69157429 Score: 57
Period size: 10 Copynumber: 4.1 Consensus size: 10
69157378 AATTAAATTC
69157388 TAAAAGATAAA
1 TAAAA-ATAAA
69157399 TAAAAATAAA
1 TAAAAATAAA
*
69157409 TAAAGATAAA
1 TAAAAATAAA
*
69157419 TGAAAATAAA
1 TAAAAATAAA
69157429 T
1 T
69157430 CCTAAAATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
10 23 0.82
11 5 0.18
ACGTcount: A:0.71, C:0.00, G:0.07, T:0.21
Consensus pattern (10 bp):
TAAAAATAAA
Found at i:69157413 original size:20 final size:20
Alignment explanation
Indices: 69157390--69157429 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
69157380 TTAAATTCTA
69157390 AAAGATAAATAAAAATAAAT
1 AAAGATAAATAAAAATAAAT
*
69157410 AAAGATAAATGAAAATAAAT
1 AAAGATAAATAAAAATAAAT
69157430 CCTAAAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.72, C:0.00, G:0.07, T:0.20
Consensus pattern (20 bp):
AAAGATAAATAAAAATAAAT
Found at i:69158763 original size:7 final size:7
Alignment explanation
Indices: 69158743--69158778 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
69158733 CATAATAAAA
69158743 TAGTCATT
1 TAGT-ATT
*
69158751 TCGTATT
1 TAGTATT
69158758 TAGTATT
1 TAGTATT
69158765 TAGTATT
1 TAGTATT
69158772 TAGTATT
1 TAGTATT
69158779 ATGTATATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
7 23 0.88
8 3 0.12
ACGTcount: A:0.25, C:0.06, G:0.14, T:0.56
Consensus pattern (7 bp):
TAGTATT
Found at i:69159313 original size:30 final size:30
Alignment explanation
Indices: 69159277--69159342 Score: 96
Period size: 30 Copynumber: 2.2 Consensus size: 30
69159267 TGACGATACA
*
69159277 GGCCCATCAACAGCACCCACACAATCACCG
1 GGCCCATCAACAACACCCACACAATCACCG
* * *
69159307 GGCCCATCAACAACGCTCACACAGTCACCG
1 GGCCCATCAACAACACCCACACAATCACCG
69159337 GGCCCA
1 GGCCCA
69159343 ACACTCCAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.30, C:0.45, G:0.17, T:0.08
Consensus pattern (30 bp):
GGCCCATCAACAACACCCACACAATCACCG
Found at i:69159964 original size:8 final size:9
Alignment explanation
Indices: 69159948--69159977 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
69159938 TGAATAAGGC
69159948 AATATTTTT
1 AATATTTTT
69159957 AATATTTTT
1 AATATTTTT
69159966 -ATATTTTT
1 AATATTTTT
69159974 AATA
1 AATA
69159978 AAATATAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.40
9 12 0.60
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (9 bp):
AATATTTTT
Found at i:69163408 original size:126 final size:126
Alignment explanation
Indices: 69162954--69163391 Score: 732
Period size: 126 Copynumber: 3.5 Consensus size: 126
69162944 CCAAACAGTA
* * *
69162954 ACTACTGTAGCAAAAGAGTGTCGACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
1 ACTACTGTAGCAAAAGAGGGTCCACGTAGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
*
69163019 GCTTGAAGTGTTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGAT
66 GCTTGAAGCGTTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGAT
* * * * *
69163080 ACTACTGTAACAAAAGAGGGTCCACGTGGGAGCTTTTTTCAGTAATTTTACTAATAGTGCATCCT
1 ACTACTGTAGCAAAAGAGGGTCCACGTAGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
* *
69163145 GCTTGAAGCGTTTTGGACACTATTTGTTCAGAAACGTCTTTTCAAAATTATTTTTTTAGAT
66 GCTTGAAGCGTTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGAT
*
69163206 ACTACTATAGCAAAAGAGGGTCCACGTAGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
1 ACTACTGTAGCAAAAGAGGGTCCACGTAGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
*
69163271 GCTTGAAGCGTTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATAATTTTTTCAGAT
66 GCTTGAAGCGTTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGAT
* * *
69163332 ACTACTGTAGCAAAAGAGCGTCCACGTAGAAGCTTTTTTCAGTAATTTTGCTGATAGTGC
1 ACTACTGTAGCAAAAGAGGGTCCACGTAGGAGCTTTTTTCAGTAATTTTGCTGACAGTGC
69163392 TCCCCCAGGG
Statistics
Matches: 290, Mismatches: 22, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
126 290 1.00
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (126 bp):
ACTACTGTAGCAAAAGAGGGTCCACGTAGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
GCTTGAAGCGTTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGAT
Found at i:69166435 original size:24 final size:24
Alignment explanation
Indices: 69166403--69166451 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
69166393 GTTTCAATCT
69166403 TACTACACTCCTTCTATTAGAATA
1 TACTACACTCCTTCTATTAGAATA
69166427 TACTACACTCCTTCTATTAGAATA
1 TACTACACTCCTTCTATTAGAATA
69166451 T
1 T
69166452 GGTTTTATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.33, C:0.24, G:0.04, T:0.39
Consensus pattern (24 bp):
TACTACACTCCTTCTATTAGAATA
Found at i:69169548 original size:27 final size:27
Alignment explanation
Indices: 69169517--69169634 Score: 155
Period size: 27 Copynumber: 4.4 Consensus size: 27
69169507 CCCCAAAATA
*
69169517 GGTAAAATGACCGTACTACCCTTGTAG
1 GGTAAAATGACCGTACTACCCCTGTAG
* * *
69169544 AGTAAAATGACCGTAATGCCCCTGTAG
1 GGTAAAATGACCGTACTACCCCTGTAG
* *
69169571 GGTAAAATGACCGTAGTACCCCTATAG
1 GGTAAAATGACCGTACTACCCCTGTAG
* * *
69169598 GGTAAAATGACCGTACTACTCTTGTAT
1 GGTAAAATGACCGTACTACCCCTGTAG
69169625 GGTAAAATGA
1 GGTAAAATGA
69169635 TGATTATGCC
Statistics
Matches: 78, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 78 1.00
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.25
Consensus pattern (27 bp):
GGTAAAATGACCGTACTACCCCTGTAG
Found at i:69170077 original size:33 final size:34
Alignment explanation
Indices: 69170019--69170086 Score: 86
Period size: 33 Copynumber: 2.0 Consensus size: 34
69170009 CCCACATTGC
*
69170019 TACTGTATAGGGCTAAGGCTCAGACT-GTACTGA
1 TACTGAATAGGGCTAAGGCTCAGACTCGTACTGA
* *
69170052 TACTGAATAGGGCTCAGGC-CTAGACTCTTACTGA
1 TACTGAATAGGGCTAAGGCTC-AGACTCGTACTGA
69170086 T
1 T
69170087 CGGGGCTTAG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
32 1 0.03
33 22 0.73
34 7 0.23
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (34 bp):
TACTGAATAGGGCTAAGGCTCAGACTCGTACTGA
Found at i:69173672 original size:27 final size:27
Alignment explanation
Indices: 69173637--69173701 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
69173627 CCCCAAAATA
* *
69173637 GGTAAAATGACCGTAATATCCCTGTAG
1 GGTAAAATGACCGTAATACCCCTATAG
*
69173664 GGTAAAATGACCGTAATACCCCTATAT
1 GGTAAAATGACCGTAATACCCCTATAG
69173691 GGTAAAATGAC
1 GGTAAAATGAC
69173702 GATTATGCCC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (27 bp):
GGTAAAATGACCGTAATACCCCTATAG
Found at i:69173887 original size:27 final size:27
Alignment explanation
Indices: 69173838--69173896 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
69173828 TGGAAGAAGT
*
69173838 ACTG-TACTGGTGACTATGTCACATTC
1 ACTGTTACTGGTGACTATGCCACATTC
* * *
69173864 ACTGTTACTGGTGGCTTTGCCACATTT
1 ACTGTTACTGGTGACTATGCCACATTC
69173891 ACTGTT
1 ACTGTT
69173897 TCTAGCAGCT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 4 0.14
27 24 0.86
ACGTcount: A:0.19, C:0.22, G:0.20, T:0.39
Consensus pattern (27 bp):
ACTGTTACTGGTGACTATGCCACATTC
Found at i:69175565 original size:94 final size:89
Alignment explanation
Indices: 69175393--69175643 Score: 252
Period size: 90 Copynumber: 2.7 Consensus size: 89
69175383 AACTACAAAA
* * * * * * * *
69175393 GTTGCAGGTTAATATGCTGTCAGATGGTTGTGAGTGTACAAAATATTTACAGATGAGAGCTGCCT
1 GTTGCAGGTTAATAAG-TGTCAGATGGTTGTGAATGCACAACATATTTGCAGATAAGAGCTACCA
* *
69175458 GGATATGGATGGATGAATGAACCACCAAT
65 GAAAATGGATGGAT-AA-G--CCACCAAT
* * *
69175487 GTTGTAGGTTAATAAGTTGTCAGATGGTTGTGAATACACAACGTATTTGCAGATAAGAGCTACCA
1 GTTGCAGGTTAATAAG-TGTCAGATGGTTGTGAATGCACAACATATTTGCAGATAAGAGCTACCA
*
69175552 GAAAAT-GAGTGGATCAGCCACCAAT
65 GAAAATGGA-TGGATAAGCCACCAAT
* * * * *
69175577 GTTGCAGGTTAATACAGTCTCAGATGGTTGTGAATGCATAACACAATTGCAAATAAGAGCTACCA
1 GTTGCAGGTTAATA-AGTGTCAGATGGTTGTGAATGCACAACATATTTGCAGATAAGAGCTACCA
69175642 GA
65 GA
69175644 TAATTTGAGG
Statistics
Matches: 132, Mismatches: 23, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
90 64 0.48
91 2 0.02
92 1 0.01
93 3 0.02
94 62 0.47
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.27
Consensus pattern (89 bp):
GTTGCAGGTTAATAAGTGTCAGATGGTTGTGAATGCACAACATATTTGCAGATAAGAGCTACCAG
AAAATGGATGGATAAGCCACCAAT
Found at i:69175663 original size:90 final size:90
Alignment explanation
Indices: 69175477--69175664 Score: 234
Period size: 90 Copynumber: 2.1 Consensus size: 90
69175467 TGGATGAATG
* * ** * *
69175477 AACCACCAATGTTGTAGGTTAATAAGTTGTCAGATGGTTGTGAATACACAACGTATTTGCAGATA
1 AACCACCAATGTTGCAGGTTAATAAGTTCTCAGATGGTTGTGAATACACAACACAATTGCAAATA
*
69175542 AGAGCTACCAGAAAATGAGTGGATC
66 AGAGCTACCAGAAAATGAGAGGATC
* * *
69175567 AGCCACCAATGTTGCAGGTTAATACAG-TCTCAGATGGTTGTGAATGCATAACACAATTGCAAAT
1 AACCACCAATGTTGCAGGTTAATA-AGTTCTCAGATGGTTGTGAATACACAACACAATTGCAAAT
* ** *
69175631 AAGAGCTACCAGATAATTTGAGGATT
65 AAGAGCTACCAGAAAATGAGAGGATC
69175657 AACCACCA
1 AACCACCA
69175665 GAGTTGTAGA
Statistics
Matches: 82, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
90 80 0.98
91 2 0.02
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (90 bp):
AACCACCAATGTTGCAGGTTAATAAGTTCTCAGATGGTTGTGAATACACAACACAATTGCAAATA
AGAGCTACCAGAAAATGAGAGGATC
Found at i:69181757 original size:16 final size:16
Alignment explanation
Indices: 69181713--69181751 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
69181703 AGAGAGGAGG
* *
69181713 GGAAAGAAAGAAGGAA
1 GGAAAAAAAGAAAGAA
69181729 GGAAAAAAAGAAAGAA
1 GGAAAAAAAGAAAGAA
69181745 GGAAAAA
1 GGAAAAA
69181752 GGGAAAAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (16 bp):
GGAAAAAAAGAAAGAA
Found at i:69183893 original size:46 final size:46
Alignment explanation
Indices: 69183825--69184023 Score: 256
Period size: 46 Copynumber: 4.2 Consensus size: 46
69183815 TACCATGGCA
* * * **
69183825 ATACCATGGCAACCTAATATGAAATGTGTAAGACCATGGTTGAAAG
1 ATACCATGGCAACGTGACATGAAATGAATAAGACCATGGTTGAAAG
69183871 ATACCATGGCAACGTGACATGAAATGAATAAGACCATGGTTGAAAG
1 ATACCATGGCAACGTGACATGAAATGAATAAGACCATGGTTGAAAG
*
69183917 ATACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAG
1 ATACCATGGCAACGTGACATGAAATGAATAAGACCATGGTTGAAAG
* *
69183963 ATACCATGGCAACATGACA-GAAAATGAATGAGTAAGACCATAGTTGAAAG
1 ATACCATGGCAACGTGACATG-AAATG-A--A-TAAGACCATGGTTGAAAG
* *
69184013 ACACTATGGCA
1 ATACCATGGCA
69184024 TCATGTCAAA
Statistics
Matches: 137, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
45 1 0.01
46 108 0.79
47 1 0.01
49 1 0.01
50 26 0.19
ACGTcount: A:0.42, C:0.16, G:0.23, T:0.20
Consensus pattern (46 bp):
ATACCATGGCAACGTGACATGAAATGAATAAGACCATGGTTGAAAG
Found at i:69186031 original size:17 final size:17
Alignment explanation
Indices: 69186009--69186088 Score: 58
Period size: 17 Copynumber: 4.7 Consensus size: 17
69185999 ATATATATAT
69186009 ATATATATAAATCATTA
1 ATATATATAAATCATTA
69186026 ATATAT-T-AATCGATT-
1 ATATATATAAATC-ATTA
* * * **
69186041 ATATTTAATAATTAATGC
1 ATATAT-ATAAATCATTA
*
69186059 ATATATATAAATTATTA
1 ATATATATAAATCATTA
69186076 ATATATTATAAAT
1 ATATA-TATAAAT
69186089 GAGATGAGAT
Statistics
Matches: 48, Mismatches: 9, Indels: 11
0.71 0.13 0.16
Matches are distributed among these distances:
15 9 0.19
16 4 0.08
17 21 0.44
18 14 0.29
ACGTcount: A:0.49, C:0.04, G:0.03, T:0.45
Consensus pattern (17 bp):
ATATATATAAATCATTA
Found at i:69186277 original size:19 final size:18
Alignment explanation
Indices: 69186253--69186293 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
69186243 CATAATAGAA
*
69186253 TAATATATTCTAAAACTAT
1 TAATATA-TATAAAACTAT
*
69186272 TAATATATATATAACTAT
1 TAATATATATAAAACTAT
69186290 TAAT
1 TAAT
69186294 TGATACAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.49, C:0.07, G:0.00, T:0.44
Consensus pattern (18 bp):
TAATATATATAAAACTAT
Found at i:69187032 original size:20 final size:21
Alignment explanation
Indices: 69187007--69187052 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
69186997 AGTATATTTC
69187007 ATATAATAATAAACAATA-AT
1 ATATAATAATAAACAATATAT
* **
69187027 ATATAATGATAATTAATATAT
1 ATATAATAATAAACAATATAT
69187048 ATATA
1 ATATA
69187053 TATATATTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (21 bp):
ATATAATAATAAACAATATAT
Found at i:69187188 original size:4 final size:4
Alignment explanation
Indices: 69187181--69187206 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
69187171 TATGCATGCT
69187181 TACA TACA TACA TACA TACA TACA TA
1 TACA TACA TACA TACA TACA TACA TA
69187207 ACTATTAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.50, C:0.23, G:0.00, T:0.27
Consensus pattern (4 bp):
TACA
Found at i:69188569 original size:41 final size:40
Alignment explanation
Indices: 69188524--69188633 Score: 127
Period size: 37 Copynumber: 2.8 Consensus size: 40
69188514 ACTTCGAGTT
**
69188524 GATGAGACACTGGGTGTCAATTTATTACTTCGGATATATTC
1 GATGAGACACTGGGTGTCAATTTATTACTTCGG-TATAGCC
* *
69188565 GATGAGGCACTGGGTGTCAATTTA-T--TTCGGTTTAGCC
1 GATGAGACACTGGGTGTCAATTTATTACTTCGGTATAGCC
* * *
69188602 GATGAGACACTAGGAGTCAAATTATTACTTCG
1 GATGAGACACTGGGTGTCAATTTATTACTTCG
69188634 AACGATCTAA
Statistics
Matches: 58, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
37 24 0.41
38 6 0.10
40 5 0.09
41 23 0.40
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (40 bp):
GATGAGACACTGGGTGTCAATTTATTACTTCGGTATAGCC
Found at i:69206061 original size:17 final size:18
Alignment explanation
Indices: 69206022--69206058 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
69206012 ATGTGGATGA
69206022 GGTTTTAAATTTTAATGG
1 GGTTTTAAATTTTAATGG
69206040 GGTTTTAAATTTTAATGG
1 GGTTTTAAATTTTAATGG
69206058 G
1 G
69206059 TTTGAGCTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.49
Consensus pattern (18 bp):
GGTTTTAAATTTTAATGG
Found at i:69206227 original size:21 final size:22
Alignment explanation
Indices: 69206201--69206241 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
69206191 TCGATCGAAT
69206201 AAATTA-ATTAAACTGAAAATG
1 AAATTAGATTAAACTGAAAATG
*
69206222 AAATTAGATTAAGCTGAAAA
1 AAATTAGATTAAACTGAAAA
69206242 ATGGAATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.56, C:0.05, G:0.12, T:0.27
Consensus pattern (22 bp):
AAATTAGATTAAACTGAAAATG
Found at i:69206973 original size:9 final size:9
Alignment explanation
Indices: 69206944--69206983 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
69206934 ATTGTATTTT
69206944 ATAATTCGA
1 ATAATTCGA
* *
69206953 ATAACTCCA
1 ATAATTCGA
*
69206962 ATAGTTCGA
1 ATAATTCGA
69206971 ATAATTCGA
1 ATAATTCGA
69206980 ATAA
1 ATAA
69206984 CAGATTGGTG
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.45, C:0.15, G:0.10, T:0.30
Consensus pattern (9 bp):
ATAATTCGA
Found at i:69207117 original size:24 final size:26
Alignment explanation
Indices: 69207090--69207140 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
69207080 TAAATTCAAA
*
69207090 ATATTTAT-AAAAATT-TTAAAATTT
1 ATATTTATAAAAAATTATGAAAATTT
*
69207114 ATATTTTTAAAAAATTATGAAAATTT
1 ATATTTATAAAAAATTATGAAAATTT
69207140 A
1 A
69207141 AAAAAATTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 7 0.30
25 7 0.30
26 9 0.39
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (26 bp):
ATATTTATAAAAAATTATGAAAATTT
Found at i:69208205 original size:18 final size:17
Alignment explanation
Indices: 69208179--69208232 Score: 63
Period size: 18 Copynumber: 3.0 Consensus size: 17
69208169 TATTTAAGCT
*
69208179 TTATAAAAAATTATAAAA
1 TTATTAAAAA-TATAAAA
*
69208197 TTATTAAAAATATATAAT
1 TTATTAAAAATATA-AAA
69208215 TTATTATAAAATATAAAA
1 TTATTA-AAAATATAAAA
69208233 AACTTATAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
17 4 0.13
18 19 0.61
19 8 0.26
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
TTATTAAAAATATAAAA
Found at i:69209065 original size:18 final size:18
Alignment explanation
Indices: 69209029--69209067 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
69209019 TTTTTCTAGG
* *
69209029 AAAACCATTGTTTGCATA
1 AAAACCATCGTTTGAATA
*
69209047 AAAACCATCGTTTTAATA
1 AAAACCATCGTTTGAATA
69209065 AAA
1 AAA
69209068 TAATTTTACC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.46, C:0.15, G:0.08, T:0.31
Consensus pattern (18 bp):
AAAACCATCGTTTGAATA
Found at i:69211935 original size:92 final size:93
Alignment explanation
Indices: 69211823--69211992 Score: 261
Period size: 92 Copynumber: 1.8 Consensus size: 93
69211813 CGCCCATAAG
* * * * *
69211823 CAAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTG-ACTCGGATTTAACTCA
1 CAAACTCAGACTCAAATCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
69211887 ACGAGCTCGGATGCCTAGTTATATCTCA
66 ACGAGCTCGGATGCCTAGTTATATCTCA
* *
69211915 CAAACTCAGACTCAAATCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTTA
1 CAAACTCAGACTCAAATCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
69211980 ACGAGTTCGGATG
66 ACGAGCTCGGATG
69211993 TTCGCATCCA
Statistics
Matches: 69, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
92 44 0.64
93 25 0.36
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (93 bp):
CAAACTCAGACTCAAATCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTATATCTCA
Found at i:69211983 original size:46 final size:46
Alignment explanation
Indices: 69211816--69212033 Score: 208
Period size: 46 Copynumber: 4.7 Consensus size: 46
69211806 TGTAACTCGC
** * *
69211816 CCATAAGCAAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* * * * * * *
69211862 CCATAAGTG-ACTCGGATTTAACTCAACGAGCTCGGATGCCTAGTTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-TTCG-CAT
* * ** * *
69211909 ATC-TCA-CAAACTCAGACTCAAATCAACGAGTTCGGACGTTCGCAT
1 -CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* *
69211954 CCATAAGTGAACTCGGACTCAACTTAACGAGTTCGGATGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
*
69212000 CCATAAGTGAACTCGGACTCAACTCAACAAGTTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC
69212034 AGATACCCAA
Statistics
Matches: 134, Mismatches: 32, Indels: 12
0.75 0.18 0.07
Matches are distributed among these distances:
44 1 0.01
45 29 0.22
46 76 0.57
47 27 0.20
48 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:69212013 original size:92 final size:94
Alignment explanation
Indices: 69211816--69212033 Score: 248
Period size: 92 Copynumber: 2.4 Consensus size: 94
69211806 TGTAACTCGC
* * * *
69211816 CCATAAGCAAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGACTCGGATTT
1 CCATAAGCAAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGACTCGGACTC
*
69211881 AACTCAACGAGCTCGGATGCCTAGTTATA
66 AACTCAACGAGCTCGGATGCCTAGTCATA
* * * *
69211910 TC-TCA-CAAACTCAGACTCAAATCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACT
1 CCATAAGCAAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTG-ACTCGGACT
* * * *
69211973 CAACTTAACGAGTTCGGATG-TTCG-CAT-
65 CAACTCAACGAGCTCGGATGCCTAGTCATA
** *
69212000 CCATAAGTGAACTCGGACTCAACTCAACAAGTTC
1 CCATAAGCAAACTCGGACTCAACTCAACGAGTTC
69212034 AGATACCCAA
Statistics
Matches: 101, Mismatches: 20, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
90 1 0.01
91 4 0.04
92 68 0.67
93 27 0.27
94 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (94 bp):
CCATAAGCAAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGACTCGGACTC
AACTCAACGAGCTCGGATGCCTAGTCATA
Found at i:69218558 original size:15 final size:17
Alignment explanation
Indices: 69218528--69218569 Score: 61
Period size: 15 Copynumber: 2.6 Consensus size: 17
69218518 TAAAATTGAC
69218528 AAACAATCTAAAAAAAT
1 AAACAATCTAAAAAAAT
69218545 AAACAAT-T-AAAAAAT
1 AAACAATCTAAAAAAAT
*
69218560 AAACAGTCTA
1 AAACAATCTA
69218570 GAGAGTCTCC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 13 0.59
16 2 0.09
17 7 0.32
ACGTcount: A:0.67, C:0.12, G:0.02, T:0.19
Consensus pattern (17 bp):
AAACAATCTAAAAAAAT
Found at i:69220791 original size:10 final size:10
Alignment explanation
Indices: 69220772--69220863 Score: 68
Period size: 10 Copynumber: 9.4 Consensus size: 10
69220762 TTTTACAATT
*
69220772 TTTTTCTATA
1 TTTTTATATA
69220782 TTCTTT-TATA
1 TT-TTTATATA
69220792 TTTTTATATA
1 TTTTTATATA
*
69220802 TTTTTATCT-
1 TTTTTATATA
*
69220811 TTTTAATA-A
1 TTTTTATATA
*
69220820 TATTCTATA-A
1 T-TTTTATATA
69220830 TTTTT-TATA
1 TTTTTATATA
*
69220839 TATTTTAAATA
1 T-TTTTATATA
*
69220850 TTTTTAAATA
1 TTTTTATATA
69220860 TTTT
1 TTTT
69220864 ATTTTTTTAT
Statistics
Matches: 68, Mismatches: 7, Indels: 14
0.76 0.08 0.16
Matches are distributed among these distances:
8 2 0.03
9 15 0.22
10 44 0.65
11 7 0.10
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.66
Consensus pattern (10 bp):
TTTTTATATA
Found at i:69220801 original size:20 final size:19
Alignment explanation
Indices: 69220772--69220863 Score: 80
Period size: 19 Copynumber: 4.7 Consensus size: 19
69220762 TTTTACAATT
* *
69220772 TTTTTCTATATTCTTTTATA
1 TTTTTATATATT-TTTAATA
*
69220792 TTTTTATATATTTTT-ATC
1 TTTTTATATATTTTTAATA
*
69220810 TTTTTAATAATATTCTATAAT-
1 TTTTT-AT-ATATT-TTTAATA
*
69220831 TTTTTATATATTTTAAATA
1 TTTTTATATATTTTTAATA
*
69220850 TTTTTAAATATTTT
1 TTTTTATATATTTT
69220864 ATTTTTTTAT
Statistics
Matches: 61, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
18 11 0.18
19 23 0.38
20 18 0.30
21 7 0.11
22 2 0.03
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.66
Consensus pattern (19 bp):
TTTTTATATATTTTTAATA
Found at i:69220814 original size:19 final size:18
Alignment explanation
Indices: 69220769--69220873 Score: 77
Period size: 20 Copynumber: 5.6 Consensus size: 18
69220759 ATTTTTTACA
*
69220769 ATTTTTTTCTATATTCTTTT
1 ATTTTTTTATATA-T-TTTT
*
69220789 ATATTTTTATATATTTTT
1 ATTTTTTTATATATTTTT
* *
69220807 ATCTTTTTAATAATATTCTAT
1 AT-TTTTTTAT-ATATT-TTT
* *
69220828 AATTTTTTATATATTTTAA
1 ATTTTTTTATATATTTT-T
* *
69220847 ATATTTTTAAATA-TTTT
1 ATTTTTTTATATATTTTT
69220864 ATTTTTTTAT
1 ATTTTTTTAT
69220874 CATTTTCTTC
Statistics
Matches: 66, Mismatches: 15, Indels: 11
0.72 0.16 0.12
Matches are distributed among these distances:
17 8 0.12
18 10 0.15
19 22 0.33
20 23 0.35
21 3 0.05
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.68
Consensus pattern (18 bp):
ATTTTTTTATATATTTTT
Found at i:69223213 original size:45 final size:45
Alignment explanation
Indices: 69223097--69223216 Score: 152
Period size: 45 Copynumber: 2.7 Consensus size: 45
69223087 CACATATGTG
69223097 GATTCATAGATATGGTGGACTCG-TACATGCAAATTCATAGAAGAA
1 GATTCATAGATATGGTGGACT-GATACATGCAAATTCATAGAAGAA
* * **
69223142 GATTCATAGATATGGTAGACTTATACATGTGAATTCATAGAAGAA
1 GATTCATAGATATGGTGGACTGATACATGCAAATTCATAGAAGAA
* * **
69223187 TATTTATAGATATGACGGACTGATACATGC
1 GATTCATAGATATGGTGGACTGATACATGC
69223217 GATCTGTGTC
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
45 63 1.00
ACGTcount: A:0.38, C:0.12, G:0.21, T:0.30
Consensus pattern (45 bp):
GATTCATAGATATGGTGGACTGATACATGCAAATTCATAGAAGAA
Found at i:69224985 original size:62 final size:65
Alignment explanation
Indices: 69224860--69224988 Score: 167
Period size: 62 Copynumber: 2.0 Consensus size: 65
69224850 TGCCATTTTT
*
69224860 TCTTCATTCATCTTTTGACTCTTTTTTTTTAAATCTTTTAATCATCTTTTTGTCTATGATGGAAG
1 TCTTCATTCATCTTTTGAC-C-TTTTTTTTAAATCTTCTAATCATCTTTTTGTCTATGATGGAAG
69224925 AA
64 AA
** *
69224927 TCTTCATTCATCTTTTGA-C-TTTTTTT-GGTCTTCTAATCATCTTTTTGT-TAATGGTGGAAGA
1 TCTTCATTCATCTTTTGACCTTTTTTTTAAATCTTCTAATCATCTTTTTGTCT-ATGATGGAAGA
69224988 A
65 A
69224989 CAAGCTCAAT
Statistics
Matches: 57, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
61 1 0.02
62 30 0.53
63 7 0.12
65 1 0.02
67 18 0.32
ACGTcount: A:0.21, C:0.15, G:0.12, T:0.53
Consensus pattern (65 bp):
TCTTCATTCATCTTTTGACCTTTTTTTTAAATCTTCTAATCATCTTTTTGTCTATGATGGAAGAA
Found at i:69226589 original size:46 final size:48
Alignment explanation
Indices: 69226485--69226604 Score: 154
Period size: 48 Copynumber: 2.5 Consensus size: 48
69226475 TGTCTTCGAC
* * *
69226485 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATAAT
1 ATGGACTTACATGACTCATTCCTGTCTCCAAAGCCATATATATATAAT
* * * *
69226533 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCCATATA-A-CTGAT
1 ATGGACTTACATGACTCATTCCTGTCTCCAAAGCCATATATATATAAT
*
69226579 ATGGACTTACATGACTCATTTCTGTC
1 ATGGACTTACATGACTCATTCCTGTC
69226605 CTGTCCTGTC
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
46 26 0.42
47 1 0.02
48 35 0.56
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (48 bp):
ATGGACTTACATGACTCATTCCTGTCTCCAAAGCCATATATATATAAT
Found at i:69229135 original size:22 final size:22
Alignment explanation
Indices: 69229110--69229181 Score: 78
Period size: 22 Copynumber: 3.4 Consensus size: 22
69229100 ACCTAAGTTC
*
69229110 ATTTCATTTAAGATAATGAACA
1 ATTTTATTTAAGATAATGAACA
* **
69229132 ATTTTATTTGAG-TAA-GTTC-
1 ATTTTATTTAAGATAATGAACA
*
69229151 ATTTGATTTAAGATAATGAACA
1 ATTTTATTTAAGATAATGAACA
69229173 ATTTTATTT
1 ATTTTATTT
69229182 GAGTTGGCTG
Statistics
Matches: 38, Mismatches: 9, Indels: 6
0.72 0.17 0.11
Matches are distributed among these distances:
19 10 0.26
20 5 0.13
21 5 0.13
22 18 0.47
ACGTcount: A:0.38, C:0.06, G:0.11, T:0.46
Consensus pattern (22 bp):
ATTTTATTTAAGATAATGAACA
Found at i:69229148 original size:41 final size:41
Alignment explanation
Indices: 69229103--69229185 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
69229093 TATCACAACC
69229103 TAAGTTCATTTCATTTAAGATAATGAACAATTTTATTTGAG
1 TAAGTTCATTTCATTTAAGATAATGAACAATTTTATTTGAG
*
69229144 TAAGTTCATTTGATTTAAGATAATGAACAATTTTATTTGAG
1 TAAGTTCATTTCATTTAAGATAATGAACAATTTTATTTGAG
69229185 T
1 T
69229186 TGGCTGATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.36, C:0.06, G:0.13, T:0.45
Consensus pattern (41 bp):
TAAGTTCATTTCATTTAAGATAATGAACAATTTTATTTGAG
Found at i:69229313 original size:27 final size:28
Alignment explanation
Indices: 69229259--69229314 Score: 71
Period size: 27 Copynumber: 2.0 Consensus size: 28
69229249 AGGTTAGTTA
*
69229259 ATTTAAGATCTTAACCTAAGTTCATTTG
1 ATTTAAGATCTGAACCTAAGTTCATTTG
*
69229287 ATTTAAGATCATGAA-C-AAGTTTATTTG
1 ATTTAAGATC-TGAACCTAAGTTCATTTG
69229314 A
1 A
69229315 GTTAGCTGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 11 0.44
28 11 0.44
29 3 0.12
ACGTcount: A:0.36, C:0.11, G:0.12, T:0.41
Consensus pattern (28 bp):
ATTTAAGATCTGAACCTAAGTTCATTTG
Done.