Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 210 of 255
Found at i:70336563 original size:79 final size:80
Alignment explanation
Indices: 70336480--70336644 Score: 176
Period size: 79 Copynumber: 2.1 Consensus size: 80
70336470 ATTTTTTAGT
* * *
70336480 TATATTATCATTATTATTCTT-AC-TATTATTATTACTACTACTATTATTTTTATTAACATATTA
1 TATATTATCATTATTATTATTAACATA-TATTATTACTACTACTATTATTATTATTAACATACTA
*
70336543 TTATTTCCTATTTTTA
65 TTATTTCCTATTATTA
** * * * * **
70336559 TATA-TATTTTTATTGTTATTAACATATATTATTATTATTATTATTATTATTATTAATGTACTAT
1 TATATTATCATTATTATTATTAACATATATTATTACTACTACTATTATTATTATTAACATACTAT
*
70336623 TATTTTCTATTATTA
66 TATTTCCTATTATTA
70336638 T-TATTAT
1 TATATTAT
70336645 TACTAATATC
Statistics
Matches: 70, Mismatches: 13, Indels: 6
0.79 0.15 0.07
Matches are distributed among these distances:
78 14 0.20
79 54 0.77
80 2 0.03
ACGTcount: A:0.32, C:0.07, G:0.01, T:0.60
Consensus pattern (80 bp):
TATATTATCATTATTATTATTAACATATATTATTACTACTACTATTATTATTATTAACATACTAT
TATTTCCTATTATTA
Found at i:70336585 original size:22 final size:22
Alignment explanation
Indices: 70336503--70336646 Score: 82
Period size: 22 Copynumber: 6.5 Consensus size: 22
70336493 TTATTCTTAC
*
70336503 TATTATTATT-AC-TACTACTAT
1 TATTATTATTAACATA-TATTAT
*
70336524 TATTTTTATTAACATATTATTAT
1 TATTATTATTAACATA-TATTAT
* * *
70336547 T-TCCTATT-TTTATATATATTTT
1 TAT--TATTATTAACATATATTAT
*
70336569 TATTGTTATTAACATATATTAT
1 TATTATTATTAACATATATTAT
**
70336591 TATTATTATTATTAT-TATTAT
1 TATTATTATTAACATATATTAT
* *** *
70336612 TAATGTACTATTATTTTCTATTAT
1 T-AT-TATTATTAACATATATTAT
70336636 TATTATTATTA
1 TATTATTATTA
70336647 CTAATATCAC
Statistics
Matches: 97, Mismatches: 17, Indels: 17
0.74 0.13 0.13
Matches are distributed among these distances:
21 19 0.20
22 41 0.42
23 27 0.28
24 10 0.10
ACGTcount: A:0.32, C:0.06, G:0.01, T:0.60
Consensus pattern (22 bp):
TATTATTATTAACATATATTAT
Found at i:70336672 original size:18 final size:18
Alignment explanation
Indices: 70336651--70336689 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
70336641 TTATTACTAA
* *
70336651 TATCACTATTATCATTTT
1 TATCACCATCATCATTTT
*
70336669 TATCACCATCATTATTTT
1 TATCACCATCATCATTTT
70336687 TAT
1 TAT
70336690 TTATTATTTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.18, G:0.00, T:0.54
Consensus pattern (18 bp):
TATCACCATCATCATTTT
Found at i:70336715 original size:11 final size:11
Alignment explanation
Indices: 70336680--70336716 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
70336670 ATCACCATCA
70336680 TTATT-TTTAT
1 TTATTATTTAT
70336690 TTATTATTTCA-
1 TTATTATTT-AT
70336701 TTATTATTTAT
1 TTATTATTTAT
70336712 TTATT
1 TTATT
70336717 CTTACCTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
10 6 0.25
11 17 0.71
12 1 0.04
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.73
Consensus pattern (11 bp):
TTATTATTTAT
Found at i:70336732 original size:22 final size:22
Alignment explanation
Indices: 70336678--70336732 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
70336668 TTATCACCAT
*
70336678 CATTA-TTTTTATTTATTATTT
1 CATTATTTTTTATTTATTATTA
* *
70336699 CATTATTATTTATTTATTCTTA
1 CATTATTTTTTATTTATTATTA
* *
70336721 CCTTTTTTTTTA
1 CATTATTTTTTA
70336733 ACTCCAAGCC
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
21 5 0.19
22 22 0.81
ACGTcount: A:0.22, C:0.09, G:0.00, T:0.69
Consensus pattern (22 bp):
CATTATTTTTTATTTATTATTA
Found at i:70339583 original size:17 final size:19
Alignment explanation
Indices: 70339553--70339594 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
70339543 TCTCTTATAA
70339553 TTTTTGATATTTCC-TCAT
1 TTTTTGATATTTCCTTCAT
*
70339571 TTTTTGGTA-TTCCTTCAT
1 TTTTTGATATTTCCTTCAT
70339589 TATTTT
1 T-TTTT
70339595 TAATACACCT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 4 0.19
18 13 0.62
19 4 0.19
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.64
Consensus pattern (19 bp):
TTTTTGATATTTCCTTCAT
Found at i:70340031 original size:20 final size:20
Alignment explanation
Indices: 70340008--70340056 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 20
70339998 TTTCATTATT
* *
70340008 TTTTTTGTGTTCCCTTAGAA
1 TTTTTTGTATACCCTTAGAA
* *
70340028 TTTTTGGTATAGCCTTAGAA
1 TTTTTTGTATACCCTTAGAA
*
70340048 ATTTTTGTA
1 TTTTTTGTA
70340057 CTTTCTCATA
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.20, C:0.10, G:0.16, T:0.53
Consensus pattern (20 bp):
TTTTTTGTATACCCTTAGAA
Found at i:70340074 original size:20 final size:19
Alignment explanation
Indices: 70340049--70340113 Score: 85
Period size: 20 Copynumber: 3.3 Consensus size: 19
70340039 GCCTTAGAAA
70340049 TTTTTGTACTTTCTCATATT
1 TTTTTGTA-TTTCTCATATT
*
70340069 TTTTTGTATTCTCTCATAAT
1 TTTTTGTATT-TCTCATATT
*
70340089 ATTTTGTATATTCTCATATT
1 TTTTTGTAT-TTCTCATATT
70340109 TTTTT
1 TTTTT
70340114 TTTTACATTT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
19 2 0.05
20 36 0.92
21 1 0.03
ACGTcount: A:0.18, C:0.12, G:0.05, T:0.65
Consensus pattern (19 bp):
TTTTTGTATTTCTCATATT
Found at i:70341612 original size:20 final size:20
Alignment explanation
Indices: 70341589--70341682 Score: 93
Period size: 20 Copynumber: 4.7 Consensus size: 20
70341579 TGGTACTAGT
70341589 CTCATAATTTTTTATACTTC
1 CTCATAATTTTTTATACTTC
** *
70341609 CTCATTTTTTTTTATATTTC
1 CTCATAATTTTTTATACTTC
* *
70341629 CTCATAATTTTTTACACTCC
1 CTCATAATTTTTTATACTTC
*
70341649 CTCATATATTTTTGGTATGC-T-
1 CTCATA-ATTTTT--TATACTTC
70341670 CTCATAATTTTTT
1 CTCATAATTTTTT
70341683 GTATTCTTTC
Statistics
Matches: 60, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
18 1 0.02
20 44 0.73
21 12 0.20
23 3 0.05
ACGTcount: A:0.21, C:0.19, G:0.03, T:0.56
Consensus pattern (20 bp):
CTCATAATTTTTTATACTTC
Found at i:70341619 original size:40 final size:41
Alignment explanation
Indices: 70341574--70341682 Score: 118
Period size: 40 Copynumber: 2.7 Consensus size: 41
70341564 TTCCTCTTAA
* *
70341574 ATTTTTGGTACTAGTCTCATAATTTTTTATACTTCCTCAT-T
1 ATTTTTGGTA-TAGTCTCATAATTTTTTACACTCCCTCATAT
* *
70341615 -TTTTT-TTATATTTCCTCATAATTTTTTACACTCCCTCATAT
1 ATTTTTGGTATA-GT-CTCATAATTTTTTACACTCCCTCATAT
70341656 ATTTTTGGTAT-GCTCTCATAATTTTTT
1 ATTTTTGGTATAG-TCTCATAATTTTTT
70341683 GTATTCTTTC
Statistics
Matches: 56, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
38 2 0.04
39 3 0.05
40 28 0.50
41 14 0.25
42 6 0.11
43 3 0.05
ACGTcount: A:0.21, C:0.17, G:0.06, T:0.56
Consensus pattern (41 bp):
ATTTTTGGTATAGTCTCATAATTTTTTACACTCCCTCATAT
Found at i:70341713 original size:22 final size:20
Alignment explanation
Indices: 70341650--70341714 Score: 76
Period size: 20 Copynumber: 3.1 Consensus size: 20
70341640 TTACACTCCC
* *
70341650 TCATATATTTTTGGTATGCTC
1 TCATA-ATTTTTTGTATGCTT
*
70341671 TCATAATTTTTTGTATTCTT
1 TCATAATTTTTTGTATGCTT
70341691 TCATAATTTGTTTTGTATGCTT
1 TCATAA-TT-TTTTGTATGCTT
70341713 TC
1 TC
70341715 GAAGTAAGGA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
20 18 0.47
21 7 0.18
22 13 0.34
ACGTcount: A:0.18, C:0.12, G:0.11, T:0.58
Consensus pattern (20 bp):
TCATAATTTTTTGTATGCTT
Found at i:70342213 original size:21 final size:21
Alignment explanation
Indices: 70342171--70342216 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
70342161 TGAGGTTGTG
* * *
70342171 CAAAAAATTATGTGAGATTAC
1 CAAAAAAATATGAGAGACTAC
*
70342192 CAAAAAAATATGAGGGACTAC
1 CAAAAAAATATGAGAGACTAC
70342213 CAAA
1 CAAA
70342217 TATTTATTCG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.52, C:0.13, G:0.15, T:0.20
Consensus pattern (21 bp):
CAAAAAAATATGAGAGACTAC
Found at i:70342296 original size:37 final size:39
Alignment explanation
Indices: 70342253--70342330 Score: 142
Period size: 38 Copynumber: 2.1 Consensus size: 39
70342243 TTATTTATTT
70342253 AATTTTTCATTTTTT-AAATTTATTAATATATATA-ACA
1 AATTTTTCATTTTTTAAAATTTATTAATATATATATACA
70342290 AATTTTTCATTTTTTAAAATTTATTAATATATATATACA
1 AATTTTTCATTTTTTAAAATTTATTAATATATATATACA
70342329 AA
1 AA
70342331 AAAAATTATA
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
37 15 0.38
38 19 0.49
39 5 0.13
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (39 bp):
AATTTTTCATTTTTTAAAATTTATTAATATATATATACA
Found at i:70343228 original size:49 final size:50
Alignment explanation
Indices: 70343163--70343257 Score: 147
Period size: 49 Copynumber: 1.9 Consensus size: 50
70343153 TTGCATGATT
* * * *
70343163 TTTTTATCTTGAGGCGTGAATCATTTTCCTTGTCGCTTTATCTTTTTTTC
1 TTTTTATCTTGAGGCGTAAATCACTTTCCATATCGCTTTATCTTTTTTTC
70343213 TTTTTAT-TTGAGGCGTAAATCACTTTCCATATCGCTTTATCTTTT
1 TTTTTATCTTGAGGCGTAAATCACTTTCCATATCGCTTTATCTTTT
70343258 GACCGATATA
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
49 34 0.83
50 7 0.17
ACGTcount: A:0.16, C:0.18, G:0.13, T:0.54
Consensus pattern (50 bp):
TTTTTATCTTGAGGCGTAAATCACTTTCCATATCGCTTTATCTTTTTTTC
Found at i:70345812 original size:41 final size:41
Alignment explanation
Indices: 70345767--70345849 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
70345757 ATTTATCCAA
70345767 AGCCAAACTGGAACAAGTCAAAAAAGAAATCCAATAAAACT
1 AGCCAAACTGGAACAAGTCAAAAAAGAAATCCAATAAAACT
*
70345808 AGCCAAACTGGAACAAGTCAAAAATGAAATCCAATAAAACT
1 AGCCAAACTGGAACAAGTCAAAAAAGAAATCCAATAAAACT
70345849 A
1 A
70345850 CATTTTTTCT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.55, C:0.19, G:0.12, T:0.13
Consensus pattern (41 bp):
AGCCAAACTGGAACAAGTCAAAAAAGAAATCCAATAAAACT
Found at i:70349170 original size:31 final size:29
Alignment explanation
Indices: 70349095--70349181 Score: 111
Period size: 31 Copynumber: 2.9 Consensus size: 29
70349085 AAATTATTAT
**
70349095 TAAATTATTTAAAATTTTTATTTAAATCAC
1 TAAATTATTTAAAA-AATTATTTAAATCAC
*
70349125 TAAATTATTTAAAAAATTATTTAAGTCAC
1 TAAATTATTTAAAAAATTATTTAAATCAC
*
70349154 TAAAATATTTTTAAAAAATTATTTAAAT
1 T-AAAT-TATTTAAAAAATTATTTAAAT
70349182 TATTAGATTA
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
29 13 0.26
30 18 0.36
31 19 0.38
ACGTcount: A:0.48, C:0.05, G:0.01, T:0.46
Consensus pattern (29 bp):
TAAATTATTTAAAAAATTATTTAAATCAC
Found at i:70350086 original size:14 final size:15
Alignment explanation
Indices: 70350058--70350095 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
70350048 AGACACAAAG
*
70350058 AAAAGGAAAATAGAA
1 AAAAAGAAAATAGAA
70350073 AAAAAGAAAA-AGAA
1 AAAAAGAAAATAGAA
*
70350087 AAAGAGAAA
1 AAAAAGAAA
70350096 GACCAAGTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.03
Consensus pattern (15 bp):
AAAAAGAAAATAGAA
Found at i:70354767 original size:120 final size:120
Alignment explanation
Indices: 70354537--70354767 Score: 331
Period size: 120 Copynumber: 1.9 Consensus size: 120
70354527 TCTTAATATT
* * *
70354537 ACACAAATCTAATCATTCAAACAAAATTATAATGCTTAATGTTATATCTTAAAATATACAAATTA
1 ACACAAATCTAACCATTCAAACAAAAATATAATGCTTAATGTTACATCTTAAAATATACAAATTA
* * *
70354602 TTATTACAAAAAAAAAAAACATACACTAGTCAAACCAATCTTAATATTACTTTCA
66 TTATTACAAAAAAAAAAAACATACACTAGCCAAAACAATCATAATATTACTTTCA
* *
70354657 ACACAAATCTAACCATTTAAACAAAAATATAATG-TTCAATGTTACATTTTAAAATATACAAATT
1 ACACAAATCTAACCATTCAAACAAAAATATAATGCTT-AATGTTACATCTTAAAATATACAAATT
* **
70354721 ATTATTACAAAATAAAATAAACATACACTA-CCAAAATTATCATAATA
65 ATTATTACAAAA-AAAAAAAACATACACTAGCCAAAACAATCATAATA
70354768 CACAATTCTA
Statistics
Matches: 98, Mismatches: 11, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
119 2 0.02
120 80 0.82
121 16 0.16
ACGTcount: A:0.52, C:0.15, G:0.02, T:0.31
Consensus pattern (120 bp):
ACACAAATCTAACCATTCAAACAAAAATATAATGCTTAATGTTACATCTTAAAATATACAAATTA
TTATTACAAAAAAAAAAAACATACACTAGCCAAAACAATCATAATATTACTTTCA
Found at i:70354848 original size:55 final size:55
Alignment explanation
Indices: 70354734--70354849 Score: 128
Period size: 55 Copynumber: 2.1 Consensus size: 55
70354724 ATTACAAAAT
* * ** ** *
70354734 AAAATAAACATACACTACCAAAATTATCATAATACACAATTCTAACAATTCTAAT
1 AAAATAAACATACACTACCAAAACTATCATAATAAACAACACTAACAATAATAAA
*
70354789 AAAATAAACATACACTACCAAAACTATCTTAATAAACATACACT-ACAA-AATAACA
1 AAAATAAACATACACTACCAAAACTATCATAATAAACA-ACACTAACAATAATAA-A
70354844 AAAATA
1 AAAATA
70354850 TAATGTTCAA
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
54 3 0.06
55 45 0.88
56 3 0.06
ACGTcount: A:0.57, C:0.20, G:0.00, T:0.23
Consensus pattern (55 bp):
AAAATAAACATACACTACCAAAACTATCATAATAAACAACACTAACAATAATAAA
Found at i:70358092 original size:14 final size:14
Alignment explanation
Indices: 70358073--70358104 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
70358063 CTTGAATTTG
70358073 TGGTCCCGAAACTA
1 TGGTCCCGAAACTA
70358087 TGGTCCCGAAACTA
1 TGGTCCCGAAACTA
70358101 TGGT
1 TGGT
70358105 TCTGATTTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (14 bp):
TGGTCCCGAAACTA
Found at i:70362072 original size:26 final size:26
Alignment explanation
Indices: 70362035--70362144 Score: 193
Period size: 26 Copynumber: 4.2 Consensus size: 26
70362025 TGATACAAAT
* *
70362035 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
70362061 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
70362087 TGATAATGAGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
70362113 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
70362139 TGATAA
1 TGATAA
70362145 GAATTTCATG
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:70374039 original size:20 final size:20
Alignment explanation
Indices: 70373989--70374039 Score: 50
Period size: 20 Copynumber: 2.5 Consensus size: 20
70373979 TTAATCGAGT
* *
70373989 GGTTAATTAGGTTTTAATTAA
1 GGTTAATTA-GCTTAAATTAA
*
70374010 -GTGAATTTAGCTTAAATTAA
1 GGTTAA-TTAGCTTAAATTAA
70374030 GGTTAATTAG
1 GGTTAATTAG
70374040 GTATAAGGAT
Statistics
Matches: 24, Mismatches: 4, Indels: 5
0.73 0.12 0.15
Matches are distributed among these distances:
20 17 0.71
21 7 0.29
ACGTcount: A:0.35, C:0.02, G:0.20, T:0.43
Consensus pattern (20 bp):
GGTTAATTAGCTTAAATTAA
Found at i:70374203 original size:20 final size:22
Alignment explanation
Indices: 70374180--70374221 Score: 70
Period size: 20 Copynumber: 2.0 Consensus size: 22
70374170 TTTATGTTTT
70374180 AAATATATTAT-TTA-ATTATA
1 AAATATATTATATTATATTATA
70374200 AAATATATTATATTATATTATA
1 AAATATATTATATTATATTATA
70374222 TTATTATATC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 11 0.55
21 3 0.15
22 6 0.30
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
AAATATATTATATTATATTATA
Found at i:70374213 original size:22 final size:20
Alignment explanation
Indices: 70374180--70374221 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 20
70374170 TTTATGTTTT
70374180 AAATATATTATT-TAATTATA
1 AAATATATTATTAT-ATTATA
70374200 AAATATATTATATTATATTATA
1 AAATATA-T-TATTATATTATA
70374222 TTATTATATC
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
20 7 0.37
21 1 0.05
22 10 0.53
23 1 0.05
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
AAATATATTATTATATTATA
Found at i:70374416 original size:18 final size:19
Alignment explanation
Indices: 70374384--70374430 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
70374374 TAAAACAAAT
70374384 GAAACAAATGAAATA-AAAA
1 GAAACAAA-GAAATAGAAAA
*
70374403 GAAATAAAGAAATAGAAAA
1 GAAACAAAGAAATAGAAAA
70374422 GAAACAAAG
1 GAAACAAAG
70374431 TAACAGAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 6 0.24
19 19 0.76
ACGTcount: A:0.72, C:0.04, G:0.15, T:0.09
Consensus pattern (19 bp):
GAAACAAAGAAATAGAAAA
Found at i:70374438 original size:19 final size:19
Alignment explanation
Indices: 70374384--70374438 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 19
70374374 TAAAACAAAT
*
70374384 GAAACAAATGAAATA-AAAA
1 GAAACAAA-GAAACAGAAAA
* *
70374403 GAAATAAAGAAATAGAAAA
1 GAAACAAAGAAACAGAAAA
*
70374422 GAAACAAAGTAACAGAA
1 GAAACAAAGAAACAGAA
70374439 TATGAAACGA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
18 6 0.19
19 25 0.81
ACGTcount: A:0.71, C:0.05, G:0.15, T:0.09
Consensus pattern (19 bp):
GAAACAAAGAAACAGAAAA
Found at i:70374472 original size:8 final size:8
Alignment explanation
Indices: 70374455--70374491 Score: 56
Period size: 8 Copynumber: 4.5 Consensus size: 8
70374445 ACGAAAACAG
*
70374455 AGAAGAAA
1 AGAAGGAA
70374463 AGAAGGAA
1 AGAAGGAA
70374471 AGAAAGGAA
1 AG-AAGGAA
70374480 AGAAGGAA
1 AGAAGGAA
70374488 AGAA
1 AGAA
70374492 AGGGAAATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
8 19 0.70
9 8 0.30
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (8 bp):
AGAAGGAA
Found at i:70374481 original size:17 final size:17
Alignment explanation
Indices: 70374461--70374494 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
70374451 ACAGAGAAGA
70374461 AAAGAAGGAAAGAAAGG
1 AAAGAAGGAAAGAAAGG
70374478 AAAGAAGGAAAGAAAGG
1 AAAGAAGGAAAGAAAGG
70374495 GAAATTAGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (17 bp):
AAAGAAGGAAAGAAAGG
Found at i:70375845 original size:18 final size:18
Alignment explanation
Indices: 70375809--70375885 Score: 73
Period size: 18 Copynumber: 4.3 Consensus size: 18
70375799 TGACTATTAT
* * *
70375809 TGAATAATTGATCGTTAC
1 TGAATAACTGATTGCTAC
70375827 TGAATAACTGATTGCTAC
1 TGAATAACTGATTGCTAC
** * *
70375845 TGAGCAAATGATTGTTAC
1 TGAATAACTGATTGCTAC
* *
70375863 TGAGTAACTAATTGCTAC
1 TGAATAACTGATTGCTAC
70375881 TGAAT
1 TGAAT
70375886 GATTGAATGT
Statistics
Matches: 47, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 47 1.00
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.35
Consensus pattern (18 bp):
TGAATAACTGATTGCTAC
Found at i:70375897 original size:36 final size:36
Alignment explanation
Indices: 70375809--70375899 Score: 103
Period size: 36 Copynumber: 2.5 Consensus size: 36
70375799 TGACTATTAT
*
70375809 TGAATAATTG-ATCGTTACTGAATAACTGATTGCTAC
1 TGAATAATTGAAT-GTTACTGAATAACTAATTGCTAC
** * * *
70375845 TGAGCAAATGATTGTTACTGAGTAACTAATTGCTAC
1 TGAATAATTGAATGTTACTGAATAACTAATTGCTAC
*
70375881 TGAATGATTGAATGTTACT
1 TGAATAATTGAATGTTACT
70375900 AAATGAAACT
Statistics
Matches: 43, Mismatches: 11, Indels: 2
0.77 0.20 0.04
Matches are distributed among these distances:
36 42 0.98
37 1 0.02
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.36
Consensus pattern (36 bp):
TGAATAATTGAATGTTACTGAATAACTAATTGCTAC
Found at i:70378796 original size:20 final size:20
Alignment explanation
Indices: 70378746--70378796 Score: 50
Period size: 20 Copynumber: 2.5 Consensus size: 20
70378736 TTAATCGAGT
* *
70378746 GGTTAATTAGGTTTTAATTAA
1 GGTTAATTA-GCTTAAATTAA
*
70378767 -GTGAATTTAGCTTAAATTAA
1 GGTTAA-TTAGCTTAAATTAA
70378787 GGTTAATTAG
1 GGTTAATTAG
70378797 GTATAAGAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 5
0.73 0.12 0.15
Matches are distributed among these distances:
20 17 0.71
21 7 0.29
ACGTcount: A:0.35, C:0.02, G:0.20, T:0.43
Consensus pattern (20 bp):
GGTTAATTAGCTTAAATTAA
Found at i:70379190 original size:19 final size:18
Alignment explanation
Indices: 70379153--70379193 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
70379143 TGAAACAAAT
*
70379153 GAAATAAAAAGAAATAAA
1 GAAATAAAAAGAAAGAAA
*
70379171 GAAATAGAAAAGAAGGAAA
1 GAAATA-AAAAGAAAGAAA
70379190 GAAA
1 GAAA
70379194 GAAAGAAAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.73, C:0.00, G:0.20, T:0.07
Consensus pattern (18 bp):
GAAATAAAAAGAAAGAAA
Found at i:70380553 original size:18 final size:18
Alignment explanation
Indices: 70380517--70380593 Score: 64
Period size: 18 Copynumber: 4.3 Consensus size: 18
70380507 TGACTATTAT
* * *
70380517 TGAATAATTGATCGTTAC
1 TGAATAACTGATTGCTAC
70380535 TGAATAACTGATTGCTAC
1 TGAATAACTGATTGCTAC
** * *
70380553 TGAGCAAATGATTGTTAC
1 TGAATAACTGATTGCTAC
* * *
70380571 TGAGTAACTAATTGCTAT
1 TGAATAACTGATTGCTAC
70380589 TGAAT
1 TGAAT
70380594 GATTGAATGT
Statistics
Matches: 46, Mismatches: 13, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 46 1.00
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.36
Consensus pattern (18 bp):
TGAATAACTGATTGCTAC
Found at i:70380605 original size:36 final size:36
Alignment explanation
Indices: 70380514--70380607 Score: 100
Period size: 36 Copynumber: 2.6 Consensus size: 36
70380504 GACTGACTAT
*
70380514 TATTGAATAATTG-ATCGTTACTGAATAACTGATTGC
1 TATTGAATAATTGAAT-GTTACTGAATAACTAATTGC
* ** * * *
70380550 TACTGAGCAAATGATTGTTACTGAGTAACTAATTGC
1 TATTGAATAATTGAATGTTACTGAATAACTAATTGC
*
70380586 TATTGAATGATTGAATGTTACT
1 TATTGAATAATTGAATGTTACT
70380608 AAATGAAACT
Statistics
Matches: 44, Mismatches: 13, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
36 43 0.98
37 1 0.02
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.38
Consensus pattern (36 bp):
TATTGAATAATTGAATGTTACTGAATAACTAATTGC
Found at i:70384803 original size:12 final size:12
Alignment explanation
Indices: 70384786--70384813 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
70384776 GGATTCTGTC
70384786 TAACTCTGGTGG
1 TAACTCTGGTGG
70384798 TAACTCTGGTGG
1 TAACTCTGGTGG
70384810 TAAC
1 TAAC
70384814 CCTATAAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.21, C:0.18, G:0.29, T:0.32
Consensus pattern (12 bp):
TAACTCTGGTGG
Found at i:70400230 original size:26 final size:26
Alignment explanation
Indices: 70400200--70400282 Score: 157
Period size: 26 Copynumber: 3.2 Consensus size: 26
70400190 TGAAATTCCC
70400200 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
70400226 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
70400252 ATCATGGAACATTTACCTAACCCATC
1 ATCATGGAACATTTACCTAACCCATT
70400278 ATCAT
1 ATCAT
70400283 TTTGTATCAA
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.35, C:0.28, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:70402744 original size:21 final size:20
Alignment explanation
Indices: 70402707--70402746 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
70402697 CTTTGAAACA
70402707 GGGCACACGCCCATGTGGAG
1 GGGCACACGCCCATGTGGAG
* *
70402727 GGGCAACATGCCCGTGTGGA
1 GGGC-ACACGCCCATGTGGA
70402747 AACTTGAACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.20, C:0.28, G:0.40, T:0.12
Consensus pattern (20 bp):
GGGCACACGCCCATGTGGAG
Found at i:70404368 original size:13 final size:13
Alignment explanation
Indices: 70404350--70404375 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
70404340 AAAACACCAG
70404350 ATTATATAACATA
1 ATTATATAACATA
70404363 ATTATATAACATA
1 ATTATATAACATA
70404376 CCAAAATAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (13 bp):
ATTATATAACATA
Found at i:70405507 original size:17 final size:18
Alignment explanation
Indices: 70405477--70405510 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
70405467 AATTTCTATT
70405477 CAATTTATACCCTAATTC
1 CAATTTATACCCTAATTC
*
70405495 CAATTTA-ATCCTAATT
1 CAATTTATACCCTAATT
70405511 AACTCATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.35, C:0.24, G:0.00, T:0.41
Consensus pattern (18 bp):
CAATTTATACCCTAATTC
Found at i:70407061 original size:46 final size:46
Alignment explanation
Indices: 70406973--70407145 Score: 179
Period size: 46 Copynumber: 3.7 Consensus size: 46
70406963 ACATCTCATA
** * * *
70406973 GCTGATGCATGTCTTAGACGTGTCTTACACTGGCT-TATGTCTCGAG
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CGTCTCGAG
* * *
70407019 GCTGATGCATGTCCCAGACATGTTTTACACTAGCTCTCGTCTCAAT
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCGAG
* * * * *
70407065 GCTGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAAT-GTG
1 GCTGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGT-CTCGAG
70407113 GCTGATGCATGTCCCAGACATGTCTTACACTAG
1 GCTGATGCATGTCCCAGACATGTCTTACACTAG
70407146 AACACAAATA
Statistics
Matches: 105, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
46 54 0.51
47 27 0.26
48 23 0.22
49 1 0.01
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.31
Consensus pattern (46 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCGAG
Found at i:70407124 original size:47 final size:46
Alignment explanation
Indices: 70407018--70407145 Score: 154
Period size: 47 Copynumber: 2.7 Consensus size: 46
70407008 TATGTCTCGA
* *
70407018 GGCTGATGCATGTCCCAGACATGTTTTACACTAGCTCTCGTCTCAAT
1 GGCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCG-ATCAAT
* *
70407065 -GCTGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTC-AT-AATGT
1 GGCTGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGATCAA--T
70407112 GGCTGATGCATGTCCCAGACATGTCTTACACTAG
1 GGCTGATGCATGTCCCAGACATGTCTTACACTAG
70407146 AACACAAATA
Statistics
Matches: 70, Mismatches: 6, Indels: 11
0.80 0.07 0.13
Matches are distributed among these distances:
45 2 0.03
46 19 0.27
47 27 0.39
48 22 0.31
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (46 bp):
GGCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGATCAAT
Found at i:70407519 original size:30 final size:30
Alignment explanation
Indices: 70407483--70407556 Score: 148
Period size: 30 Copynumber: 2.5 Consensus size: 30
70407473 ATAATTGGGA
70407483 AAAATGACCATTTTGCCCTTAGACTTTCAC
1 AAAATGACCATTTTGCCCTTAGACTTTCAC
70407513 AAAATGACCATTTTGCCCTTAGACTTTCAC
1 AAAATGACCATTTTGCCCTTAGACTTTCAC
70407543 AAAATGACCATTTT
1 AAAATGACCATTTT
70407557 ACCCCATAGA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 44 1.00
ACGTcount: A:0.32, C:0.24, G:0.09, T:0.34
Consensus pattern (30 bp):
AAAATGACCATTTTGCCCTTAGACTTTCAC
Found at i:70418427 original size:45 final size:45
Alignment explanation
Indices: 70418368--70418530 Score: 147
Period size: 46 Copynumber: 3.6 Consensus size: 45
70418358 TATCCATGCC
70418368 GATGCCATGTCCCAGACATAGTCTTACATTGGCACATCTCATAGCT
1 GATGCCATGTCCCAGACATAGTCTTACATTGGCACATCTCA-AGCT
* * *
70418414 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCGAGGCT
1 GATGCCATGTCCCAGACATAGTCTTACATTGGC--ACATCTC-AAGCT
* ****
70418460 GAT-ACATGTCCCAGAC--AGTCTTACACTATCTTTCATCTCAATGCT
1 GATGCCATGTCCCAGACATAGTCTTACA-T-TGGCACATCTCAA-GCT
*
70418505 GATGCCATGTCCCAGACATGGTCTTA
1 GATGCCATGTCCCAGACATAGTCTTA
70418531 TACTAGCTCT
Statistics
Matches: 94, Mismatches: 12, Indels: 20
0.75 0.10 0.16
Matches are distributed among these distances:
44 13 0.14
45 33 0.35
46 40 0.43
47 2 0.02
48 6 0.06
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.29
Consensus pattern (45 bp):
GATGCCATGTCCCAGACATAGTCTTACATTGGCACATCTCAAGCT
Found at i:70418471 original size:46 final size:46
Alignment explanation
Indices: 70418373--70418530 Score: 164
Period size: 45 Copynumber: 3.5 Consensus size: 46
70418363 ATGCCGATGC
* *
70418373 CATGTCCCAGACATAGTCTTACATTGGC--ACATCTCATAGCTGATG
1 CATGTCCCAGACATAGTCTTACACTGGCTTACATCTCA-AGCTGATA
* *
70418418 CATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCGAGGCTGATA
1 CATGTCCCAGACATAGTCTTACACTGGCTTACATCTC-AAGCTGATA
** * *
70418464 CATGTCCCAGAC--AGTCTTACACTATCTTTCATCTCAATGCTGATGC
1 CATGTCCCAGACATAGTCTTACACTGGCTTACATCTCAA-GCTGAT-A
*
70418510 CATGTCCCAGACATGGTCTTA
1 CATGTCCCAGACATAGTCTTA
70418531 TACTAGCTCT
Statistics
Matches: 94, Mismatches: 11, Indels: 13
0.80 0.09 0.11
Matches are distributed among these distances:
44 13 0.14
45 38 0.40
46 36 0.38
47 1 0.01
48 6 0.06
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (46 bp):
CATGTCCCAGACATAGTCTTACACTGGCTTACATCTCAAGCTGATA
Found at i:70423093 original size:54 final size:54
Alignment explanation
Indices: 70423024--70423131 Score: 207
Period size: 54 Copynumber: 2.0 Consensus size: 54
70423014 TAAATATCCT
70423024 CTGCCCAGAATAGATGATTTGTTTGATCAGTTAAAAGGGGCTACAGTGTTTTCA
1 CTGCCCAGAATAGATGATTTGTTTGATCAGTTAAAAGGGGCTACAGTGTTTTCA
*
70423078 CTGCTCAGAATAGATGATTTGTTTGATCAGTTAAAAGGGGCTACAGTGTTTTCA
1 CTGCCCAGAATAGATGATTTGTTTGATCAGTTAAAAGGGGCTACAGTGTTTTCA
70423132 AAGATAGATT
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.34
Consensus pattern (54 bp):
CTGCCCAGAATAGATGATTTGTTTGATCAGTTAAAAGGGGCTACAGTGTTTTCA
Found at i:70426902 original size:43 final size:45
Alignment explanation
Indices: 70426816--70426929 Score: 130
Period size: 43 Copynumber: 2.6 Consensus size: 45
70426806 TGATTACACG
* *
70426816 TAAGACCATGTCTGGGACATTGGCAT--TATATTGAGATTACGTA
1 TAAGACCATTTCTGGGACATTGGCATCGTATAATGAGATTACGTA
* * *
70426859 TAAGACCATTTCTGGGACATTGGCATCGT-TAAT-CGTTTTCGTA
1 TAAGACCATTTCTGGGACATTGGCATCGTATAATGAGATTACGTA
*
70426902 TAAGACC-TTGTCTGGGACAGTGGCATCG
1 TAAGACCATT-TCTGGGACATTGGCATCG
70426930 ATATGTGGTA
Statistics
Matches: 62, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
42 2 0.03
43 56 0.90
44 3 0.05
45 1 0.02
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (45 bp):
TAAGACCATTTCTGGGACATTGGCATCGTATAATGAGATTACGTA
Found at i:70427177 original size:34 final size:34
Alignment explanation
Indices: 70427129--70427194 Score: 114
Period size: 34 Copynumber: 1.9 Consensus size: 34
70427119 ACCTGATTAA
70427129 GATAATGAATATATGTTCAATGAGAAAGGTTTAG
1 GATAATGAATATATGTTCAATGAGAAAGGTTTAG
* *
70427163 GATATTGAATATATGTTTAATGAGAAAGGTTT
1 GATAATGAATATATGTTCAATGAGAAAGGTTT
70427195 TTGAAATTGA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.39, C:0.02, G:0.23, T:0.36
Consensus pattern (34 bp):
GATAATGAATATATGTTCAATGAGAAAGGTTTAG
Found at i:70427204 original size:34 final size:34
Alignment explanation
Indices: 70427134--70427206 Score: 110
Period size: 34 Copynumber: 2.1 Consensus size: 34
70427124 ATTAAGATAA
*
70427134 TGAATATATGTTCAATGAGAAAGGTTTAGGATAT
1 TGAATATATGTTCAATGAGAAAGGTTTAGGAAAT
* **
70427168 TGAATATATGTTTAATGAGAAAGGTTTTTGAAAT
1 TGAATATATGTTCAATGAGAAAGGTTTAGGAAAT
70427202 TGAAT
1 TGAAT
70427207 GTGAATAGCT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.38, C:0.01, G:0.22, T:0.38
Consensus pattern (34 bp):
TGAATATATGTTCAATGAGAAAGGTTTAGGAAAT
Found at i:70429452 original size:40 final size:40
Alignment explanation
Indices: 70429397--70429581 Score: 237
Period size: 40 Copynumber: 4.6 Consensus size: 40
70429387 TATTCGGATG
70429397 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
70429437 ATATCCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
70429480 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * * *
70429520 ATTTCCGGGCTAAGACCTGAAGGCATGTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
70429560 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
70429582 TACTTGGTTT
Statistics
Matches: 124, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
39 13 0.10
40 74 0.60
41 1 0.01
43 36 0.29
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:70429542 original size:83 final size:83
Alignment explanation
Indices: 70429401--70429555 Score: 247
Period size: 83 Copynumber: 1.9 Consensus size: 83
70429391 CGGATGATAT
* * *
70429401 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCAGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCAGGCTAAGACCCGAAGGCATGTG
70429466 TGCGAGTAGTTGCTATAC
66 TGCGAGTAGTTGCTATAC
* * * *
70429484 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATTTCCGGGCTAAGACCTGAAGGCATGTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCAGGCTAAGACCCGAAGGCATGTG
70429549 TGCGAGT
66 TGCGAGT
70429556 TACTATATCC
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
83 65 1.00
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (83 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCAGGCTAAGACCCGAAGGCATGTG
TGCGAGTAGTTGCTATAC
Found at i:70432402 original size:17 final size:17
Alignment explanation
Indices: 70432380--70432413 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
70432370 AAAAAATATT
70432380 TTGTATTTATTTCCATC
1 TTGTATTTATTTCCATC
70432397 TTGTATTTATTTCCATC
1 TTGTATTTATTTCCATC
70432414 ATTCTCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.18, C:0.18, G:0.06, T:0.59
Consensus pattern (17 bp):
TTGTATTTATTTCCATC
Found at i:70440263 original size:30 final size:30
Alignment explanation
Indices: 70440229--70440288 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
70440219 TTCCCGAGCC
*
70440229 TAAGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAAGGGCAAAAATGTAATTATGCAAAAGTT
* *
70440259 TAAGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAAGGGCAAAAATGTAATTATGCAAAAGTT
70440289 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.42, C:0.08, G:0.22, T:0.28
Consensus pattern (30 bp):
TAAGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:70447794 original size:30 final size:30
Alignment explanation
Indices: 70447736--70447795 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
70447726 TTCCCGAGCC
* *
70447736 TAGGGGCAAAAGTGTAATTATGTAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* * *
70447766 TAGGGGTAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
70447796 CGTATTAAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.38, C:0.05, G:0.25, T:0.32
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:70451150 original size:5 final size:5
Alignment explanation
Indices: 70451140--70451164 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
70451130 TTTTTCTTGC
70451140 AATTT AATTT AATTT AATTT AATTT
1 AATTT AATTT AATTT AATTT AATTT
70451165 TATTATTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
AATTT
Found at i:70460365 original size:26 final size:26
Alignment explanation
Indices: 70460327--70460410 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
70460317 CATGAAATTC
* *
70460327 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
70460353 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
70460379 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
70460405 TTATCA
1 TTATCA
70460411 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.35
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:70466094 original size:26 final size:26
Alignment explanation
Indices: 70466056--70466139 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
70466046 CATTAAATTC
* *
70466056 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
70466082 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
70466108 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
70466134 TTATCA
1 TTATCA
70466140 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.35
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:70470060 original size:48 final size:48
Alignment explanation
Indices: 70469942--70470217 Score: 255
Period size: 48 Copynumber: 5.9 Consensus size: 48
70469932 AACATAGTAA
* * * * * *
70469942 GATGCCAATGCCATATCCCAGATATGGACTTACATGGGATCACAAATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATAGGATCTCATATC
* * *
70469990 GAAG-C--TG--ATAG-CCCAG-CTATGGTCTTACACAATG-TCTCATATC
1 GATGCCAATGCCAT-GTCCCAGAC-ATGGTCTTACA-TAGGATCTCATATC
* * * * **
70470033 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACACGTC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATAGGATCTCATATC
* * *
70470081 AATGCCAATGCCATGTCCCAGACATGGTCATACATAGGATCTTATAAT-
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATAGGATCTCAT-ATC
* * * *
70470129 GATACCAATGTCATGTCCCAGACATGGTCTTACATGGGATCTCATAAC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATAGGATCTCATATC
70470177 GATGCCAATGCCATGTCCCAGACATGGTCTTACATAGGATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATAGGATC
70470218 ACACATAACC
Statistics
Matches: 178, Mismatches: 37, Indels: 26
0.74 0.15 0.11
Matches are distributed among these distances:
43 27 0.15
44 2 0.01
45 2 0.01
46 2 0.01
47 3 0.02
48 141 0.79
49 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATAGGATCTCATATC
Found at i:70470150 original size:96 final size:96
Alignment explanation
Indices: 70470037--70470217 Score: 281
Period size: 96 Copynumber: 1.9 Consensus size: 96
70470027 CATATCGATG
* **
70470037 CCAATGCCATATCCCAGATATGGTCTTACATGGGATCACACGTCAATGCCAATGCCATGTCCCAG
1 CCAATGCCATATCCCAGACATGGTCTTACATGGGATCACACAACAATGCCAATGCCATGTCCCAG
70470102 ACATGGTCATACATAGGATCTTATAATGATA
66 ACATGGTCATACATAGGATCTTATAATGATA
* * * * *
70470133 CCAATGTCATGTCCCAGACATGGTCTTACATGGGATCTCATAACGATGCCAATGCCATGTCCCAG
1 CCAATGCCATATCCCAGACATGGTCTTACATGGGATCACACAACAATGCCAATGCCATGTCCCAG
*
70470198 ACATGGTCTTACATAGGATC
66 ACATGGTCATACATAGGATC
70470218 ACACATAACC
Statistics
Matches: 76, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
96 76 1.00
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (96 bp):
CCAATGCCATATCCCAGACATGGTCTTACATGGGATCACACAACAATGCCAATGCCATGTCCCAG
ACATGGTCATACATAGGATCTTATAATGATA
Found at i:70476182 original size:11 final size:11
Alignment explanation
Indices: 70476166--70476195 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
70476156 ATTTTGATGT
*
70476166 AAAGAAAAGGG
1 AAAGAAAAGGA
70476177 AAAGAAAAGGA
1 AAAGAAAAGGA
70476188 AAAGAAAA
1 AAAGAAAA
70476196 AAGAAATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (11 bp):
AAAGAAAAGGA
Found at i:70478697 original size:43 final size:43
Alignment explanation
Indices: 70478642--70478737 Score: 129
Period size: 43 Copynumber: 2.2 Consensus size: 43
70478632 AAAAACGACG
* *
70478642 CTAAAGATCAGGACCTTTAGCACCACTTTTCTCACAAACGCCA
1 CTAAAGGTCAGGACCTTTAGCACCACTTTTCCCACAAACGCCA
* ** * *
70478685 CTATAGGTCAGGACCTTTAGCGGCGCTTTTCCCACAAACGCCG
1 CTAAAGGTCAGGACCTTTAGCACCACTTTTCCCACAAACGCCA
70478728 CTAAAGGTCA
1 CTAAAGGTCA
70478738 TAAAAATTAA
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (43 bp):
CTAAAGGTCAGGACCTTTAGCACCACTTTTCCCACAAACGCCA
Found at i:70479412 original size:12 final size:12
Alignment explanation
Indices: 70479395--70479427 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
70479385 TTGAAGAACC
70479395 ATTAATCATGTT
1 ATTAATCATGTT
70479407 ATTAATCATGTT
1 ATTAATCATGTT
70479419 ATTAATCAT
1 ATTAATCAT
70479428 ATATGCAAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.36, C:0.09, G:0.06, T:0.48
Consensus pattern (12 bp):
ATTAATCATGTT
Found at i:70483490 original size:23 final size:23
Alignment explanation
Indices: 70483471--70483533 Score: 85
Period size: 23 Copynumber: 2.7 Consensus size: 23
70483461 TAAAAAATGC
70483471 TAATACAATTACATATAAAATTT
1 TAATACAATTACATATAAAATTT
*
70483494 TAATA-AATATAAAT-TAAAAATTT
1 TAATACAAT-TACATAT-AAAATTT
70483517 TAATACAATTACATATA
1 TAATACAATTACATATA
70483534 TAGGATATTA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
22 4 0.12
23 26 0.76
24 4 0.12
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (23 bp):
TAATACAATTACATATAAAATTT
Found at i:70483553 original size:46 final size:46
Alignment explanation
Indices: 70483471--70483560 Score: 121
Period size: 46 Copynumber: 2.0 Consensus size: 46
70483461 TAAAAAATGC
*
70483471 TAATACAATTACATATAAAATTTTAATAAATATAAATTAAAAATTT
1 TAATACAATTACATATAAAATATTAATAAATATAAATTAAAAATTT
* *
70483517 TAATACAATTACATATATAGGATATTAA-ATAT-TAAATTAAAAAT
1 TAATACAATTACATATA-A-AATATTAATAAATATAAATTAAAAAT
70483561 AATATAAATA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
46 29 0.74
47 4 0.10
48 6 0.15
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.38
Consensus pattern (46 bp):
TAATACAATTACATATAAAATATTAATAAATATAAATTAAAAATTT
Found at i:70484706 original size:7 final size:7
Alignment explanation
Indices: 70484694--70484813 Score: 64
Period size: 7 Copynumber: 16.9 Consensus size: 7
70484684 ACTAATTAAT
70484694 CTAAACC
1 CTAAACC
70484701 CTAAACC
1 CTAAACC
*
70484708 TCTTAACCC
1 -C-TAAACC
*
70484717 CT-ATCC
1 CTAAACC
*
70484723 CATAAACA
1 C-TAAACC
*
70484731 CTAAACT
1 CTAAACC
70484738 CTAAACC
1 CTAAACC
*
70484745 CTTAACC
1 CTAAACC
**
70484752 CCGAACC
1 CTAAACC
*
70484759 CTTACACC
1 C-TAAACC
* *
70484767 TTAAACT
1 CTAAACC
70484774 CT-AACC
1 CTAAACC
*
70484780 CTAACCC
1 CTAAACC
70484787 CTAAACC
1 CTAAACC
*
70484794 CTAAATC
1 CTAAACC
* *
70484801 ATAATCC
1 CTAAACC
70484808 CTAAAC
1 CTAAAC
70484814 TCATAATTCA
Statistics
Matches: 82, Mismatches: 25, Indels: 12
0.69 0.21 0.10
Matches are distributed among these distances:
6 9 0.11
7 60 0.73
8 8 0.10
9 5 0.06
ACGTcount: A:0.38, C:0.40, G:0.01, T:0.22
Consensus pattern (7 bp):
CTAAACC
Found at i:70484772 original size:36 final size:36
Alignment explanation
Indices: 70484694--70484787 Score: 104
Period size: 36 Copynumber: 2.6 Consensus size: 36
70484684 ACTAATTAAT
* * *
70484694 CTAAACCCTAAACCTCTTAACCCCTATCCCATAAACA
1 CTAAACTCTAAACC-CTTAACCCCGAACCCATAAACA
* *
70484731 CTAAACTCTAAACCCTTAACCCCGAACCCTTACAC-
1 CTAAACTCTAAACCCTTAACCCCGAACCCATAAACA
70484766 CTTAAACTCT-AACCC-TAACCCC
1 C-TAAACTCTAAACCCTTAACCCC
70484788 TAAACCCTAA
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
34 7 0.14
35 6 0.12
36 25 0.49
37 13 0.25
ACGTcount: A:0.35, C:0.43, G:0.01, T:0.21
Consensus pattern (36 bp):
CTAAACTCTAAACCCTTAACCCCGAACCCATAAACA
Found at i:70484809 original size:14 final size:15
Alignment explanation
Indices: 70484792--70484820 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
70484782 AACCCCTAAA
70484792 CCCTAAA-TCATAAT
1 CCCTAAACTCATAAT
70484806 CCCTAAACTCATAAT
1 CCCTAAACTCATAAT
70484821 TCATCATAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.41, C:0.31, G:0.00, T:0.28
Consensus pattern (15 bp):
CCCTAAACTCATAAT
Found at i:70484884 original size:21 final size:21
Alignment explanation
Indices: 70484858--70484942 Score: 89
Period size: 21 Copynumber: 3.9 Consensus size: 21
70484848 ACTCCTAAAC
*
70484858 CTTAAACCCTAAACCATATAT
1 CTTAAACCATAAACCATATAT
* *
70484879 CTTAAACCATAGTTAACTCATAAAC
1 CTTAAACCATA---AAC-CATATAT
*
70484904 CTTAAACCCTAAACCATATAT
1 CTTAAACCATAAACCATATAT
*
70484925 CTTAAATCATAAACCATA
1 CTTAAACCATAAACCATA
70484943 AACTATAATG
Statistics
Matches: 52, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
21 31 0.60
22 3 0.06
24 3 0.06
25 15 0.29
ACGTcount: A:0.45, C:0.26, G:0.01, T:0.28
Consensus pattern (21 bp):
CTTAAACCATAAACCATATAT
Found at i:70484894 original size:46 final size:46
Alignment explanation
Indices: 70484842--70484935 Score: 170
Period size: 46 Copynumber: 2.0 Consensus size: 46
70484832 CTTCAAATAC
*
70484842 TAGTTAACTCCTAAACCTTAAACCCTAAACCATATATCTTAAACCA
1 TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAACCA
*
70484888 TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAATCA
1 TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAACCA
70484934 TA
1 TA
70484936 AACCATAAAC
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.43, C:0.26, G:0.02, T:0.30
Consensus pattern (46 bp):
TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAACCA
Found at i:70484937 original size:7 final size:7
Alignment explanation
Indices: 70484853--70484950 Score: 52
Period size: 7 Copynumber: 13.4 Consensus size: 7
70484843 AGTTAACTCC
*
70484853 TAAACCT
1 TAAACCA
*
70484860 TAAACCC
1 TAAACCA
70484867 TAAACCA
1 TAAACCA
* * *
70484874 TATATCT
1 TAAACCA
70484881 TAAACCA
1 TAAACCA
70484888 TAGTTAACTCA
1 TA---AAC-CA
*
70484899 TAAACCT
1 TAAACCA
*
70484906 TAAACCC
1 TAAACCA
70484913 TAAACCA
1 TAAACCA
* * *
70484920 TATATCT
1 TAAACCA
*
70484927 TAAATCA
1 TAAACCA
70484934 TAAACCA
1 TAAACCA
*
70484941 TAAACTA
1 TAAACCA
70484948 TAA
1 TAA
70484951 TGATAATTAA
Statistics
Matches: 69, Mismatches: 18, Indels: 8
0.73 0.19 0.08
Matches are distributed among these distances:
7 59 0.86
8 3 0.04
10 3 0.04
11 4 0.06
ACGTcount: A:0.47, C:0.24, G:0.01, T:0.28
Consensus pattern (7 bp):
TAAACCA
Found at i:70485408 original size:41 final size:41
Alignment explanation
Indices: 70485108--70485407 Score: 406
Period size: 41 Copynumber: 7.4 Consensus size: 41
70485098 TTATATGACT
* **
70485108 TTTAGCGGCG-TTTTCTAAAAGCGCCGCTAATGCTCTAATC
1 TTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGTC
* *
70485148 TTTAGCGGCGTTTTTACAAAAGCGCCGCTAGTGCTCTGGTC
1 TTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGTC
* * *
70485189 TTTAGCGGCGTTTCTACAAAAGCGCCGCTAATGCTCTTGTC
1 TTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGTC
* * * * *
70485230 TTTAACTGCGTCTTGCCAAAAGCGCCACTAATGCTCTGGTC
1 TTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGTC
* *
70485271 ATTAGCGGCGTTTTTCCATAAGCGCCGCTAATGCTCTGGTC
1 TTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGTC
* *
70485312 ATTAGCGGCGTTTTTCCATAAGCGCCGCTAATGCTCTGGTC
1 TTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGTC
* * *
70485353 TTTAGCGGCGTTTTGCCAAAAGCGCCGCTAATGCTAT-ATC
1 TTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGTC
70485393 TTTAGCGGCGTTTTT
1 TTTAGCGGCGTTTTT
70485408 GTAAAAAACG
Statistics
Matches: 230, Mismatches: 29, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
40 26 0.11
41 204 0.89
ACGTcount: A:0.19, C:0.26, G:0.23, T:0.32
Consensus pattern (41 bp):
TTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGTC
Found at i:70490731 original size:48 final size:49
Alignment explanation
Indices: 70490660--70490990 Score: 270
Period size: 48 Copynumber: 6.9 Consensus size: 49
70490650 GTGAATTACT
* * * * * *
70490660 GATGCCATGTTCCAAACATGGTCTTACATTGGCTTACATGTCGA-GACA
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTTACATATCAATGTCA
* * *
70490708 GATGCCATGTCCCATACATGGTCTTACACTAGCTCT-CGTCTCAATGTCA
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCT-TACATATCAATGTCA
* * * *
70490757 -ATGCCATGTTCCAAACATGGTCTTACACTGGCTTTCATATC-GTGGTC-
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTTACATATCAAT-GTCA
* ** *
70490804 GATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAATG-CC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTTACATATCAATGTCA
* * * * *
70490852 GATGCCATGTCCCAGACATGGTCTTGCACTAGC-T-CTTATTATAT-TGCT
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTTACATATCA-ATGT-CA
* * * *
70490900 GATGCCATGTTCCAAACATGGTCTTACACTGGCTTTCATATC-ATGGT-T
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTTACATATCAAT-GTCA
* * **
70490948 GATACCATGTCCCAGACATGGTCTTACACTAGCACACATATCA
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTTACATATCA
70490991 CCCAAATGTC
Statistics
Matches: 229, Mismatches: 39, Indels: 29
0.77 0.13 0.10
Matches are distributed among these distances:
46 5 0.02
47 5 0.02
48 208 0.91
49 6 0.03
50 5 0.02
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (49 bp):
GATGCCATGTCCCAAACATGGTCTTACACTAGCTTACATATCAATGTCA
Found at i:70490825 original size:96 final size:96
Alignment explanation
Indices: 70490661--70490929 Score: 301
Period size: 96 Copynumber: 2.8 Consensus size: 96
70490651 TGAATTACTG
* * * * * *
70490661 ATGCCATGTTCCAAACATGGTCTTACATTGGCTTACATGTCG-AGACAGATGCCATGTCCCATAC
1 ATGCCATGTTCCAAACATGGTCTTACACTGGCTTTCATATCGTGGTC-GATGCCATGTCCCAAAC
* * * * *
70490725 ATGGTCTTACACTAGCTCTCGTCTCAATGTCA
65 ATGGTCTTACACTAGCGCACATATCAATGCCA
*
70490757 ATGCCATGTTCCAAACATGGTCTTACACTGGCTTTCATATCGTGGTCGATGCCATGTCCCAGACA
1 ATGCCATGTTCCAAACATGGTCTTACACTGGCTTTCATATCGTGGTCGATGCCATGTCCCAAACA
*
70490822 TGGTCTTACACTAGCGCACATATCAATGCCG
66 TGGTCTTACACTAGCGCACATATCAATGCCA
* * * * ** * *
70490853 ATGCCATGTCCCAGACATGGTCTTGCACTAGCTCTT-ATTATATTGCT-GATGCCATGTTCCAAA
1 ATGCCATGTTCCAAACATGGTCTTACACTGGCT-TTCA-TATCGTGGTCGATGCCATGTCCCAAA
70490916 CATGGTCTTACACT
64 CATGGTCTTACACT
70490930 GGCTTTCATA
Statistics
Matches: 149, Mismatches: 21, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
96 139 0.93
97 10 0.07
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.30
Consensus pattern (96 bp):
ATGCCATGTTCCAAACATGGTCTTACACTGGCTTTCATATCGTGGTCGATGCCATGTCCCAAACA
TGGTCTTACACTAGCGCACATATCAATGCCA
Found at i:70490920 original size:144 final size:143
Alignment explanation
Indices: 70490708--70490990 Score: 435
Period size: 144 Copynumber: 2.0 Consensus size: 143
70490698 TGTCGAGACA
* *
70490708 GATGCCATGTCCCATACATGGTCTTACACTAGCTCTCGTCTCAATGTCAATGCCATGTTCCAAAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC-TATCAATGTCAATGCCATGTTCCAAAC
* * *
70490773 ATGGTCTTACACTGGCTTTCATATCGTGGTCGATGCCATGTCCCAGACATGGTCTTACACTAGCG
65 ATGGTCTTACACTGGCTTTCATATCATGGTCGATACCATGTCCCAGACATGGTCTTACACTAGCA
70490838 CACATATCAATGCC
130 CACATATCAATGCC
* * *
70490852 GATGCCATGTCCCAGACATGGTCTTGCACTAGCTCT-TATTATAT-TGCTGATGCCATGTTCCAA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCTATCA-ATGT-C-AATGCCATGTTCCAA
*
70490915 ACATGGTCTTACACTGGCTTTCATATCATGGTTGATACCATGTCCCAGACATGGTCTTACACTAG
63 ACATGGTCTTACACTGGCTTTCATATCATGGTCGATACCATGTCCCAGACATGGTCTTACACTAG
70490980 CACACATATCA
128 CACACATATCA
70490991 CCCAAATGTC
Statistics
Matches: 127, Mismatches: 9, Indels: 6
0.89 0.06 0.04
Matches are distributed among these distances:
142 4 0.03
143 3 0.02
144 120 0.94
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (143 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCTATCAATGTCAATGCCATGTTCCAAACA
TGGTCTTACACTGGCTTTCATATCATGGTCGATACCATGTCCCAGACATGGTCTTACACTAGCAC
ACATATCAATGCC
Found at i:70490940 original size:96 final size:96
Alignment explanation
Indices: 70490708--70490980 Score: 318
Period size: 96 Copynumber: 2.8 Consensus size: 96
70490698 TGTCGAGACA
* * * * * *
70490708 GATGCCATGTCCCATACATGGTCTTACACTAGCTCTCGTCTCAATGTCAATGCCATGTTCCAAAC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAATGTCGATGCCATGTCCCAGAC
* * *
70490773 ATGGTCTTACACTGGCTTTCATATCGTGGTC
66 ATGGTCTTACACTAGCTTTCATATAGTGCTC
* * * *
70490804 GATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAATGCCGATGCCATGTCCCAGAC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAATGTCGATGCCATGTCCCAGAC
* *
70490869 ATGGTCTTGCACTAGCTCTT-ATTATATTGCT-
66 ATGGTCTTACACTAGCT-TTCA-TATAGTGCTC
* * * * *
70490900 GATGCCATGTTCCAAACATGGTCTTACACTGGCTTTCATATC-ATGGTTGATACCATGTCCCAGA
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAAT-GTCGATGCCATGTCCCAGA
70490964 CATGGTCTTACACTAGC
65 CATGGTCTTACACTAGC
70490981 ACACATATCA
Statistics
Matches: 150, Mismatches: 24, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
95 2 0.01
96 140 0.93
97 8 0.05
ACGTcount: A:0.23, C:0.27, G:0.18, T:0.31
Consensus pattern (96 bp):
GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAATGTCGATGCCATGTCCCAGAC
ATGGTCTTACACTAGCTTTCATATAGTGCTC
Found at i:70498517 original size:48 final size:48
Alignment explanation
Indices: 70498421--70498750 Score: 302
Period size: 48 Copynumber: 6.9 Consensus size: 48
70498411 TGAATTGCCA
* * * * *
70498421 ATGCCATGTTCCAAACATGGTCTTACACTAGCTCACTTGTCGAGGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAAGGCCG
* * * * *
70498469 ATGACATATCCCATACATGGTCTTACACTAGCTCTCATATTAAAGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAAGGCCG
* * * * **
70498517 ATGCCATTTTCCAAACATGGTCTTACACTGGCTTTCATATCGTGGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAAGGCCG
* * * * *
70498565 ATGTCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAATGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAAGGCCG
* * * * **
70498613 ATGCCATGTCCTAGACATGGTCTTGCACTAGCTCTCGT-TACATTGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAT-CAAGGCCG
* * ** **
70498661 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGTGTTCG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAAGGCCG
** * * *
70498709 ATTTCATGTCCCAGACATGGTCTTACACTAGCACACATATCA
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCA
70498751 CCCAAATGTC
Statistics
Matches: 224, Mismatches: 56, Indels: 4
0.79 0.20 0.01
Matches are distributed among these distances:
47 1 0.00
48 222 0.99
49 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.30
Consensus pattern (48 bp):
ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAAGGCCG
Found at i:70498685 original size:144 final size:143
Alignment explanation
Indices: 70498425--70498750 Score: 438
Period size: 144 Copynumber: 2.3 Consensus size: 143
70498415 TTGCCAATGC
* * * * * * *
70498425 CATGTTCCAAACATGGTCTTACACTAGCTCACTTGTCGAGGCCGATGACATATCCCATACATGGT
1 CATGTCCCAGACATGGTCTTACACTAGCACACATATCAAGGCCGATGACATATCCCAGACATGGT
* *
70498490 CTTACACTAGCTCTCATATTAAAGCCGATGCCATTTTCCAAACATGGTCTTACACTGGCTTTCAT
66 CTTACACTAGCTCTCA-ATTAAAGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCAT
70498555 ATCGTGGCCGATGT
130 ATCGTGGCCGATGT
* * * * *
70498569 CATGTCCCAGACATGGTCTTACACTAGCGCACATATCAATGCCGATGCCATGTCCTAGACATGGT
1 CATGTCCCAGACATGGTCTTACACTAGCACACATATCAAGGCCGATGACATATCCCAGACATGGT
* * *
70498634 CTTGCACTAGCTCTC-GTTACATTGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCA
66 CTTACACTAGCTCTCAATTA-A-AGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCA
** *
70498698 TATCGTGTTCGATTT
129 TATCGTGGCCGATGT
70498713 CATGTCCCAGACATGGTCTTACACTAGCACACATATCA
1 CATGTCCCAGACATGGTCTTACACTAGCACACATATCA
70498751 CCCAAATGTC
Statistics
Matches: 160, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
142 3 0.02
143 1 0.01
144 156 0.98
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (143 bp):
CATGTCCCAGACATGGTCTTACACTAGCACACATATCAAGGCCGATGACATATCCCAGACATGGT
CTTACACTAGCTCTCAATTAAAGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATA
TCGTGGCCGATGT
Found at i:70509745 original size:7 final size:7
Alignment explanation
Indices: 70509729--70509761 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
70509719 GATGGGGATC
*
70509729 GGTCATT
1 GGTCAAT
70509736 GGTCAAT
1 GGTCAAT
70509743 GGTCAAT
1 GGTCAAT
70509750 GGTCAAT
1 GGTCAAT
70509757 GGTCA
1 GGTCA
70509762 CCTTTGCCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.24, C:0.15, G:0.30, T:0.30
Consensus pattern (7 bp):
GGTCAAT
Found at i:70513448 original size:3 final size:3
Alignment explanation
Indices: 70513440--70513476 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
70513430 CTTAATAGGC
70513440 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
70513477 TGAATCAGAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:70516557 original size:21 final size:21
Alignment explanation
Indices: 70516532--70516572 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
70516522 TATAATAGCA
*
70516532 AAATAATAGTAAAACAACAAT
1 AAATAATAGCAAAACAACAAT
70516553 AAATAATAGCAAAACAACAA
1 AAATAATAGCAAAACAACAA
70516573 CAGAAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.68, C:0.12, G:0.05, T:0.15
Consensus pattern (21 bp):
AAATAATAGCAAAACAACAAT
Found at i:70519262 original size:19 final size:18
Alignment explanation
Indices: 70519229--70519264 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
70519219 GTATAAAATT
*
70519229 AATGAAAAGTTTAACCTG
1 AATGAAAACTTTAACCTG
70519247 AATGAGAAACTTTAACCT
1 AATGA-AAACTTTAACCT
70519265 TAGCTCATGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.44, C:0.14, G:0.14, T:0.28
Consensus pattern (18 bp):
AATGAAAACTTTAACCTG
Found at i:70520077 original size:10 final size:10
Alignment explanation
Indices: 70520028--70520083 Score: 51
Period size: 10 Copynumber: 5.6 Consensus size: 10
70520018 CCGTATATAT
70520028 AAAAAAA-TC
1 AAAAAAATTC
*
70520037 TAAAAAATTC
1 AAAAAAATTC
* **
70520047 AAAACAATGG
1 AAAAAAATTC
*
70520057 ATAAAATATTC
1 A-AAAAAATTC
70520068 AAAAAAATTC
1 AAAAAAATTC
70520078 AAAAAA
1 AAAAAA
70520084 TAAAAAAATC
Statistics
Matches: 35, Mismatches: 10, Indels: 3
0.73 0.21 0.06
Matches are distributed among these distances:
9 6 0.17
10 23 0.66
11 6 0.17
ACGTcount: A:0.68, C:0.09, G:0.04, T:0.20
Consensus pattern (10 bp):
AAAAAAATTC
Found at i:70520083 original size:21 final size:21
Alignment explanation
Indices: 70520028--70520085 Score: 57
Period size: 21 Copynumber: 2.9 Consensus size: 21
70520018 CCGTATATAT
*
70520028 AAAAAAA-TCTAAAAA-ATTC
1 AAAAAAATTCAAAAAATATTC
* ** *
70520047 AAAACAATGGATAAAATATTC
1 AAAAAAATTCAAAAAATATTC
70520068 AAAAAAATTCAAAAAATA
1 AAAAAAATTCAAAAAATA
70520086 AAAAAATCTA
Statistics
Matches: 28, Mismatches: 9, Indels: 2
0.72 0.23 0.05
Matches are distributed among these distances:
19 6 0.21
20 4 0.14
21 18 0.64
ACGTcount: A:0.67, C:0.09, G:0.03, T:0.21
Consensus pattern (21 bp):
AAAAAAATTCAAAAAATATTC
Found at i:70533161 original size:14 final size:14
Alignment explanation
Indices: 70533144--70533177 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
70533134 ATACCCGGAG
70533144 CCCAATAAGATAAA
1 CCCAATAAGATAAA
70533158 CCCAATAAGATAAA
1 CCCAATAAGATAAA
70533172 CCCAAT
1 CCCAAT
70533178 TACCTATTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.53, C:0.26, G:0.06, T:0.15
Consensus pattern (14 bp):
CCCAATAAGATAAA
Found at i:70534610 original size:31 final size:30
Alignment explanation
Indices: 70534513--70534611 Score: 73
Period size: 31 Copynumber: 3.3 Consensus size: 30
70534503 TTATTATCAT
* *
70534513 TATTATTATATTTACTATTATT-ATTTATA
1 TATTATTATGTTTACTTTTATTAATTTATA
* * *
70534542 -AATATTAGTGTATA-TTTTATT--TTAATA
1 TATTATTA-TGTTTACTTTTATTAATTTATA
70534569 TCATTATATTATGTTTACTTTTATTGAATTTATA
1 T-A-T-TATTATGTTTACTTTTATT-AATTTATA
70534603 TATTATTAT
1 TATTATTAT
70534612 TATTATTGTT
Statistics
Matches: 53, Mismatches: 8, Indels: 16
0.69 0.10 0.21
Matches are distributed among these distances:
27 5 0.09
28 12 0.23
29 5 0.09
30 5 0.09
31 18 0.34
32 1 0.02
33 1 0.02
34 6 0.11
ACGTcount: A:0.33, C:0.03, G:0.04, T:0.60
Consensus pattern (30 bp):
TATTATTATGTTTACTTTTATTAATTTATA
Found at i:70534623 original size:174 final size:169
Alignment explanation
Indices: 70534379--70534727 Score: 558
Period size: 174 Copynumber: 2.0 Consensus size: 169
70534369 TTTTTTAAAT
* * * *
70534379 TATTTTATTTTAATATTATTATATTATGTTTAGTTTTTTTTGAATTTCTATATTATTATTATTAT
1 TATTTTATTTTAATATCATTATATTATGTTTAGCTTTTATTGAATTTATATATTATTATTATTAT
*
70534444 TGTTACTTATTATTATTACTGTTA-GTTACTTATTATTTATACTATACTTAATATTATTATTATT
66 TGTTACTTATTATTATTACTGTTATG-TACATATTATTTATACTATACTT-A-A-TATTATTA-T
*
70534508 ATCATTATTATTATATTTACTATTATTATTTATAAATATTAGTGTA
126 -T-ATTATTATTACATTTACTATTATTATTTATAAATATTAGTGTA
70534554 TATTTTATTTTAATATCATTATATTATGTTTA-CTTTTATTGAATTTATATATTATTATTATTAT
1 TATTTTATTTTAATATCATTATATTATGTTTAGCTTTTATTGAATTTATATATTATTATTATTAT
*
70534618 TGTTACTTATTATTATTACTGTTATGTACATATTATTTATATTATACTTAATATTATTATTATTA
66 TGTTACTTATTATTATTACTGTTATGTACATATTATTTATACTATACTTAATATTATTATTATTA
70534683 TTATTACATTTACTATTATTATTTATAAATATTAGTGTA
131 TTATTACATTTACTATTATTATTTATAAATATTAGTGTA
70534722 TATTTT
1 TATTTT
70534728 TATTATATAT
Statistics
Matches: 166, Mismatches: 7, Indels: 9
0.91 0.04 0.05
Matches are distributed among these distances:
168 48 0.29
169 1 0.01
170 1 0.01
171 8 0.05
172 1 0.01
173 1 0.01
174 74 0.45
175 32 0.19
ACGTcount: A:0.32, C:0.05, G:0.04, T:0.60
Consensus pattern (169 bp):
TATTTTATTTTAATATCATTATATTATGTTTAGCTTTTATTGAATTTATATATTATTATTATTAT
TGTTACTTATTATTATTACTGTTATGTACATATTATTTATACTATACTTAATATTATTATTATTA
TTATTACATTTACTATTATTATTTATAAATATTAGTGTA
Found at i:70534705 original size:3 final size:3
Alignment explanation
Indices: 70534429--70534688 Score: 121
Period size: 3 Copynumber: 84.7 Consensus size: 3
70534419 TGAATTTCTA
* * *
70534429 TAT TAT TAT TAT TAT TGT TACT TAT TAT TAT TAC TGT TAGT TACT TAT
1 TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TA-T TA-T TAT
* * *
70534477 TAT T-T ATAC TA- TACT TAA TAT TAT TAT TAT TAT CAT TAT TAT TA-
1 TAT TAT -TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
70534521 TATT TAC TAT TAT TATT TAT AAA TAT TAGT GTA- TAT T-T TAT T-T TAA
1 TA-T TAT TAT TAT TA-T TAT TAT TAT TA-T -TAT TAT TAT TAT TAT TAT
* *
70534567 TAT CAT TA- TAT TAT GT-T TACT T-T TAT TGAA T-T TAT ATAT TAT TAT
1 TAT TAT TAT TAT TAT -TAT TA-T TAT TAT T-AT TAT TAT -TAT TAT TAT
* * * *
70534612 TAT TAT TGT TACT TAT TAT TAT TAC TGT TAT GTACA TAT TAT T-T ATAT
1 TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT -TA-T TAT TAT TAT -TAT
*
70534660 TA- TACT TAA TAT TAT TAT TAT TAT TAT TA
1 TAT TA-T TAT TAT TAT TAT TAT TAT TAT TA
70534689 CATTTACTAT
Statistics
Matches: 194, Mismatches: 34, Indels: 58
0.68 0.12 0.20
Matches are distributed among these distances:
2 20 0.10
3 137 0.71
4 35 0.18
5 2 0.01
ACGTcount: A:0.32, C:0.05, G:0.04, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:70535064 original size:22 final size:20
Alignment explanation
Indices: 70535039--70535091 Score: 61
Period size: 22 Copynumber: 2.5 Consensus size: 20
70535029 TATATTGTTA
70535039 ATACTAGTATATACATTTTATT
1 ATACTAGTATATACA-TTT-TT
* *
70535061 ATACGAGTATATATATTTTT
1 ATACTAGTATATACATTTTT
70535081 ATACATAGTAT
1 ATAC-TAGTAT
70535092 TATTTTCATA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 6 0.22
21 8 0.30
22 13 0.48
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.47
Consensus pattern (20 bp):
ATACTAGTATATACATTTTT
Found at i:70535082 original size:20 final size:20
Alignment explanation
Indices: 70535029--70535084 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 20
70535019 TTATCCCTAT
* *
70535029 TATATTGTTAATACTAGTATA
1 TATATT-TTTATACGAGTATA
*
70535050 TACATTTTATTATACGAGTATA
1 TATA-TTT-TTATACGAGTATA
70535072 TATATTTTTATAC
1 TATATTTTTATAC
70535085 ATAGTATTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
20 6 0.21
21 7 0.24
22 16 0.55
ACGTcount: A:0.36, C:0.07, G:0.07, T:0.50
Consensus pattern (20 bp):
TATATTTTTATACGAGTATA
Found at i:70564155 original size:457 final size:456
Alignment explanation
Indices: 70563233--70564435 Score: 2067
Period size: 457 Copynumber: 2.6 Consensus size: 456
70563223 TTATTTCTAT
70563233 TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA
1 TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA
* *
70563298 TTTCTGTTTTCAAAATTCAACTCAGATTGAGAGAAATGAGTTGAACCTCAAGACATGCTGAGGTA
66 TTTCTGTTTTCAAAATTCAACTCAGATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTA
70563363 TTTTCAATTTTTGTTTTTCAAAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
131 TTTTCAATTTTTGTTTTT--AAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
*
70563428 ACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTACGAGTAATGAGTTGAA
194 ACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGTAATGAGTTGAA
* *
70563493 CCTCAAGACACGTTGAGGTATTTTCAATTTATGTTTTCAAAATCTACTCATATTGTGAGAGGTGA
259 CCTCAAGACACGTTGAGGTATTTTCAATTTATGTTTTCAAAATCAACTCATATTGAGAGAGGTGA
70563558 GTTGAGCCTCGGTTCACATGCTGAGGTATTTTCAATTTCTATCTTTCAAAAAAAAAAATAACTCA
324 GTTGAGCCTCGGTTCACATGCTGAGGTATTTTCAATTTCTATCTTTCAAAAAAAAAAATAACTCA
70563623 TAATGCGAGAGGTGAGTTGAGCCTCGGGACAGACTGAGGTATTGGCAATTTTTGTTTCTTAATTT
389 TAATGCGAGAGGTGAGTTGAGCCTCGGGACAGACTGAGGTATTGGCAATTTTTGTTTCTTAATTT
70563688 ATG
454 ATG
*
70563691 TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAGGTTGAGGTAATTTCAA
1 TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA
70563756 TTTCTGTTTTCAAAATTCAACTCAGATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTA
66 TTTCTGTTTTCAAAATTCAACTCAGATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTA
*
70563821 TTTTCAATTTCTGTTTTTAAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
131 TTTTCAATTTTTGTTTTTAAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
* *
70563886 ACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAATTCATATTGTGAGTAATGAGTTGAACC
196 ACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGTAATGAGTTGAACC
70563951 TCAAGACACGTTGAGGTATTTTCAATTTATGTTTTCAAAAATCAACTCATATTGAGAGAGGTGAG
261 TCAAGACACGTTGAGGTATTTTCAATTTATGTTTTC-AAAATCAACTCATATTGAGAGAGGTGAG
70564016 TTGAGCCTCGGTTCACATGCTGAGGTATTTTCAATTTCTATCTTTC-AAAAAAAAAATCAACTCA
325 TTGAGCCTCGGTTCACATGCTGAGGTATTTTCAATTTCTATCTTTCAAAAAAAAAAAT-AACTCA
* *
70564080 TAATGCGAGAGGTGAGTTGAGCCTCGGGGCACG-CTGAGGTATTGGTAATTTTTGTTTCTTAATT
389 TAATGCGAGAGGTGAGTTGAGCCTCGGGACA-GACTGAGGTATTGGCAATTTTTGTTTCTTAATT
70564144 TATG
453 TATG
70564148 TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA
1 TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA
* *
70564213 TTTCTGTTTTCAAAAAAGTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGG
66 TTTCTGTTTTC--AAAATTCAACTCAGATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGG
* * *
70564278 TATTTTCAATTTTTGTCTTT-CAAAAAAATCAACTC--ATTGCGAGAGGTGAGTTGAGCCTCAGG
129 TATTTTCAATTTTTGTTTTTAAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
* * *
70564340 ACGCGCTGAGGTAATTTCAATTTCTATTTTTCAAAAATCAACTCATATTGCGAG-AGATGAGTTG
194 ACACGCTGAGGTAATTTCAATTTCT-GTTTTCAAAATTCAACTCATATTGCGAGTA-ATGAGTTG
* * * * *
70564404 AGCGTCAGGGCACGCTGAGGTATTTTCAATTT
257 AACCTCAAGACACGTTGAGGTATTTTCAATTT
70564436 CTGCTTTCCA
Statistics
Matches: 710, Mismatches: 28, Indels: 15
0.94 0.04 0.02
Matches are distributed among these distances:
456 208 0.29
457 276 0.39
458 158 0.22
459 68 0.10
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (456 bp):
TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA
TTTCTGTTTTCAAAATTCAACTCAGATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTA
TTTTCAATTTTTGTTTTTAAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
ACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGTAATGAGTTGAACC
TCAAGACACGTTGAGGTATTTTCAATTTATGTTTTCAAAATCAACTCATATTGAGAGAGGTGAGT
TGAGCCTCGGTTCACATGCTGAGGTATTTTCAATTTCTATCTTTCAAAAAAAAAAATAACTCATA
ATGCGAGAGGTGAGTTGAGCCTCGGGACAGACTGAGGTATTGGCAATTTTTGTTTCTTAATTTAT
G
Found at i:70564215 original size:85 final size:75
Alignment explanation
Indices: 70563165--70564435 Score: 954
Period size: 72 Copynumber: 16.9 Consensus size: 75
70563155 TTCTACTTTC
* * * ** *
70563165 AAAATTCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTTTATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTT
* *
70563230 T-ATTTT--C
66 TGTTTTTAAA
* * *
70563237 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTT
*
70563302 TG-TTTT--C
66 TGTTTTTAAA
* * * * * *
70563309 AAAATTCAACTCAGATTGAGAGAAATGAGTTGAACCTCAAGACATGCTGAGGTATTTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTT
70563374 TGTTTTTCAAAAA
66 TGTTTTT---AAA
* ** * *
70563387 AAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTT
*
70563452 TG-TTTT--C
66 TGTTTTTAAA
* * * * * * *
70563459 AAAATTCAACTCATATTACGAGTAATGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAATTTA
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTT
70563524 TG-TTTT---
66 TGTTTTTAAA
* * * ** * * *
70563530 CAAAATCTACTCATATTGTGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAAT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG---ACACGCTGAGGTAATTTCAAT
* **
70563594 TTCTATCTTTCAAAAAA
63 TT-T-TGTTT--TTAAA
* ** ** *
70563611 AAAAAT-AACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGACA-GACTGAGGT-ATTGGCAATT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG-CTGAGGTAATT-TCAATT
70563673 TTTGTTTCTTAATTTA
64 TTTGTTT-TTAA---A
* * *
70563689 TGTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAGGTTGAGGTAATTTC
1 ------AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTC
* *
70563754 AATTTCTG-TTTT--C
60 AATTTTTGTTTTTAAA
* * * * *
70563767 AAAATTCAACTCAGATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTT
70563832 TGTTTTTAAAA
66 TGTTTTT-AAA
* ** * *
70563843 AAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTT
*
70563908 TG-TTTT--C
66 TGTTTTTAAA
* * * * * * * *
70563915 AAAATTCAATTCATATTGTGAGTAATGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAATTTA
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTT
*
70563980 TG-TTTT--C
66 TGTTTTTAAA
* ** * * *
70563987 AAAAATCAACTCATATTGAGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAAT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG---ACACGCTGAGGTAATTTCAAT
* **
70564051 TTCTATCTTTCAAAAA
63 TT-T-TGTTT-TTAAA
* ** ** *
70564067 AAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGT-ATTGGT-AATT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATT--TCAATT
70564130 TTTGTTTCTTAATTTA
64 TTTGTTT-TTAA---A
* *
70564146 TGTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTC
1 ------AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTC
* *
70564211 AATTTCTG-TTTTCAA
60 AATTTTTGTTTTTAAA
* * *
70564226 AAAAGTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTT
* *
70564291 TGTCTTTCAA
66 TGTTTTTAAA
** * * *
70564301 AAAAATCAACTC--ATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTT
* *
70564364 TATTTTT--C
66 TGTTTTTAAA
* * * * *
70564372 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCGTCAGGGCACGCTGAGGTATTTTCAATTT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTT
70564436 CTGCTTTCCA
Statistics
Matches: 985, Mismatches: 151, Indels: 125
0.78 0.12 0.10
Matches are distributed among these distances:
70 1 0.00
71 42 0.04
72 342 0.35
73 123 0.12
74 83 0.08
75 24 0.02
76 73 0.07
77 13 0.01
78 88 0.09
79 2 0.00
80 65 0.07
81 9 0.01
83 5 0.01
84 10 0.01
85 98 0.10
86 7 0.01
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.33
Consensus pattern (75 bp):
AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTT
TGTTTTTAAA
Found at i:70564258 original size:74 final size:73
Alignment explanation
Indices: 70564140--70564443 Score: 384
Period size: 73 Copynumber: 4.2 Consensus size: 73
70564130 TTTGTTTCTT
* * *
70564140 AATTTATG-TTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAG
70564203 GTAATTTC
66 GTAATTTC
*
70564211 AATTTCTGTTTTCAAAAAAGTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGA
1 AATTTCTGTTTTCAAAAAA-TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGA
*
70564276 GGTATTTTC
65 GGTAATTTC
* ** * *
70564285 AATTTTTGTCTTTCAAAAAAATCAACTC--ATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTG
1 AATTTCTGT-TTTC-AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTG
70564348 AGGTAATTTC
64 AGGTAATTTC
* * * * *
70564358 AATTTCTATTTTTC-AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCGTCAGGGCACGCTGA
1 AATTTCT-GTTTTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGA
*
70564422 GGTATTTTC
65 GGTAATTTC
*
70564431 AATTTCTGCTTTC
1 AATTTCTGTTTTC
70564444 CAATTTCTGC
Statistics
Matches: 204, Mismatches: 21, Indels: 15
0.85 0.09 0.06
Matches are distributed among these distances:
71 19 0.09
72 8 0.04
73 100 0.49
74 60 0.29
75 11 0.05
76 6 0.03
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (73 bp):
AATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAG
GTAATTTC
Found at i:70564645 original size:178 final size:174
Alignment explanation
Indices: 70564302--70564647 Score: 446
Period size: 178 Copynumber: 1.9 Consensus size: 174
70564292 GTCTTTCAAA
* *
70564302 AAAATCAACTCATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTAATTTCAATTTCTAT
1 AAAATCAACTCATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTCCTAT
* * *
70564367 TTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCGTCAGGGCACGCTGAGGTATTTTCA
66 TTGTCAAAAATCAACTCATATTGCGAGAGATGAGCTGAGCCTCAGGGCACGCTGAGGTATTTTCA
** * *
70564432 ATTTCTGCTTTCCAATTTCTGCCTTTTAAAAAAAAAAGAAAGAAAG
131 AAGTATGCTTTCCAATTTAT--CTTTTAAAAAAAAAAGAAAGAAAG
70564478 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTCCT
1 AAAATCAACTC--ATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTCCT
* * *
70564543 GTTTGTC-AAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTC-GAGTCACATG-TCGAGGTA
64 ATTTGTCAAAAATCAACTCATATTGCGAGAGATGAGCTGAGCCTCAG-GGCAC--GCT-GAGGTA
* * *
70564605 TTTTCAAAGTATGCTTTTTCAATTTATTTTTGTCAAAAAAAAA
125 TTTTCAAAGTATGC-TTTCCAATTTATCTTT-TAAAAAAAAAA
70564648 TCAACTCATA
Statistics
Matches: 147, Mismatches: 15, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
176 12 0.08
177 38 0.26
178 59 0.40
179 28 0.19
180 10 0.07
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (174 bp):
AAAATCAACTCATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTCCTAT
TTGTCAAAAATCAACTCATATTGCGAGAGATGAGCTGAGCCTCAGGGCACGCTGAGGTATTTTCA
AAGTATGCTTTCCAATTTATCTTTTAAAAAAAAAAGAAAGAAAG
Found at i:70566645 original size:28 final size:26
Alignment explanation
Indices: 70566598--70566682 Score: 74
Period size: 28 Copynumber: 3.3 Consensus size: 26
70566588 TTAATATCAT
*
70566598 TATATTATGT-TTACTTTTATTGAATTTC
1 TATATTAT-TATTACTTTTATTG--TTAC
70566626 TATATTATTATTA-TTATTATTGTTAC
1 TATATTATTATTACTT-TTATTGTTAC
*
70566652 T-TATTATTATTACTGTTA-TG-TAC
1 TATATTATTATTACTTTTATTGTTAC
70566675 -ATATTATT
1 TATATTATT
70566683 TATACTATAC
Statistics
Matches: 51, Mismatches: 2, Indels: 13
0.77 0.03 0.20
Matches are distributed among these distances:
23 10 0.20
24 2 0.04
25 14 0.27
26 5 0.10
27 3 0.06
28 17 0.33
ACGTcount: A:0.28, C:0.06, G:0.06, T:0.60
Consensus pattern (26 bp):
TATATTATTATTACTTTTATTGTTAC
Found at i:70566655 original size:19 final size:19
Alignment explanation
Indices: 70566633--70566669 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
70566623 TTCTATATTA
*
70566633 TTATTATTATTATTGTTAC
1 TTATTATTATTACTGTTAC
70566652 TTATTATTATTACTGTTA
1 TTATTATTATTACTGTTA
70566670 TGTACATATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.27, C:0.05, G:0.05, T:0.62
Consensus pattern (19 bp):
TTATTATTATTACTGTTAC
Found at i:70566656 original size:162 final size:166
Alignment explanation
Indices: 70566419--70566755 Score: 544
Period size: 162 Copynumber: 2.0 Consensus size: 166
70566409 TTTTTTAAAT
* * *
70566419 TATTTTATTTTAATATTATTATATTATGTTTAGTTTTTTTTGAATTTCTATATTATTATTATTAT
1 TATTTTATTTTAATATCATTATATTATGTTTAGCTTTTATTGAATTTCTATATTATTATTATTAT
70566484 TGTTACTTATTATTATTACTGTTATGTACATATTATTTATACTATAC-T-TAAT-AT-TATTATT
66 TGTTACTTATTATTATTACTGTTATGTACATATTATTTATACTATACTTATAATAATATATTATT
70566545 A-T-ATTTACTATTATTATTTATAAATATTAGTGTA
131 ATTAATTTACTATTATTATTTATAAATATTAGTGTA
70566579 TATTTTATTTTAATATCATTATATTATGTTTA-CTTTTATTGAATTTCTATATTATTATTATTAT
1 TATTTTATTTTAATATCATTATATTATGTTTAGCTTTTATTGAATTTC--TA-TATTATTATTAT
70566643 TATTGTTACTTATTATTATTACTGTTATGTACATATTATTTATACTATACTTAATAATAATAATA
63 TATTGTTACTTATTATTATTACTGTTATGTACATATTATTTATACTATACTT-ATAATAAT-ATA
70566708 TTATTATTACATTTACTATTATTATTTATAAATATTAGTGTA
126 TTATTATTA-ATTTACTATTATTATTTATAAATATTAGTGTA
70566750 TATTTT
1 TATTTT
70566756 TATTATCTAT
Statistics
Matches: 162, Mismatches: 3, Indels: 13
0.91 0.02 0.07
Matches are distributed among these distances:
159 13 0.08
160 31 0.19
161 2 0.01
162 62 0.38
163 1 0.01
165 4 0.02
166 2 0.01
168 8 0.05
169 1 0.01
171 38 0.23
ACGTcount: A:0.32, C:0.05, G:0.04, T:0.58
Consensus pattern (166 bp):
TATTTTATTTTAATATCATTATATTATGTTTAGCTTTTATTGAATTTCTATATTATTATTATTAT
TGTTACTTATTATTATTACTGTTATGTACATATTATTTATACTATACTTATAATAATATATTATT
ATTAATTTACTATTATTATTTATAAATATTAGTGTA
Found at i:70566682 original size:3 final size:3
Alignment explanation
Indices: 70566469--70566663 Score: 70
Period size: 3 Copynumber: 63.7 Consensus size: 3
70566459 TGAATTTCTA
* * * *
70566469 TAT TAT TAT TAT TAT TGT TACT TAT TAT TAT TAC TGT TAT GTACA TAT
1 TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT -TA-T TAT
* * *
70566517 TAT T-T ATAC TA- TACT TAA TAT TAT TAT TA- TATT TAC TAT TAT TATT
1 TAT TAT -TAT TAT TA-T TAT TAT TAT TAT TAT TA-T TAT TAT TAT TA-T
* * * *
70566563 TAT AAA TAT TAGT GTA- TAT T-T TAT T-T TAA TAT CAT TA- TAT TAT
1 TAT TAT TAT TA-T -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
70566606 GT-T TACT T-T TAT TGAAT T-T CTA- TAT TAT TAT TAT TAT TAT TGT
1 -TAT TA-T TAT TAT T--AT TAT -TAT TAT TAT TAT TAT TAT TAT TAT
70566649 TACT TAT TAT TAT TA
1 TA-T TAT TAT TAT TA
70566664 CTGTTATGTA
Statistics
Matches: 143, Mismatches: 23, Indels: 52
0.66 0.11 0.24
Matches are distributed among these distances:
2 19 0.13
3 98 0.69
4 21 0.15
5 5 0.03
ACGTcount: A:0.32, C:0.05, G:0.04, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:70569159 original size:22 final size:22
Alignment explanation
Indices: 70569134--70569200 Score: 57
Period size: 21 Copynumber: 3.0 Consensus size: 22
70569124 AATGAAATAT
*
70569134 TTTTAGGTATTTTTAGAATTTG
1 TTTTAGGTATTTTTAGAATTTC
** *
70569156 TTTTCA-AAATTTTT-GGATTTC
1 TTTT-AGGTATTTTTAGAATTTC
*
70569177 TTTTTGGTATTTTTAGAAATTTC
1 TTTTAGGTATTTTTAG-AATTTC
70569200 T
1 T
70569201 CTTTGATTTT
Statistics
Matches: 33, Mismatches: 8, Indels: 7
0.69 0.17 0.15
Matches are distributed among these distances:
21 15 0.45
22 11 0.33
23 7 0.21
ACGTcount: A:0.22, C:0.04, G:0.13, T:0.60
Consensus pattern (22 bp):
TTTTAGGTATTTTTAGAATTTC
Found at i:70577349 original size:41 final size:40
Alignment explanation
Indices: 70577292--70577561 Score: 192
Period size: 41 Copynumber: 6.6 Consensus size: 40
70577282 TCTGAAGTCT
* *
70577292 AACAGGAGTACGTATGTGCAATTCAGGAGTACTGAAGTACA
1 AACAGG-GCACGTATGTGCAATTCAGGAGTACCGAAGTACA
* * * * * **
70577333 AACAGTGGCATGTATGTGTAATTTA-AAGGTACCAAAGTATT
1 AACAG-GGCACGTATGTGCAATTCAGGA-GTACCGAAGTACA
* ** *
70577374 AACAGGGGCACGTATGTGTAATTCAAGG-GTATTGAAGAACCA
1 AACA-GGGCACGTATGTGCAATTC-AGGAGTACCGAAGTA-CA
** *
70577416 AA-AGGGCACGTATGTGCAAATT-AGG-GCTACTAAAGTAGA
1 AACAGGGCACGTATGTGC-AATTCAGGAG-TACCGAAGTACA
* * * *
70577455 AATAGGAGCACGTACGTGCAATTCAAGATTACCGAAGTACA
1 AACAGG-GCACGTATGTGCAATTCAGGAGTACCGAAGTACA
* *
70577496 AACAAGGGCTCGTATGTGCAATTCA-AAGGTACCGAAGTACA
1 AAC-AGGGCACGTATGTGCAATTCAGGA-GTACCGAAGTACA
70577537 AACAGAGGCACGTATGTGCAATTCA
1 AACAG-GGCACGTATGTGCAATTCA
70577562 TAATATTCTT
Statistics
Matches: 179, Mismatches: 35, Indels: 30
0.73 0.14 0.12
Matches are distributed among these distances:
39 7 0.04
40 31 0.17
41 133 0.74
42 8 0.04
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.22
Consensus pattern (40 bp):
AACAGGGCACGTATGTGCAATTCAGGAGTACCGAAGTACA
Found at i:70579845 original size:28 final size:27
Alignment explanation
Indices: 70579798--70579853 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 27
70579788 ATTTTAACCA
* *
70579798 AATTAAAATTAAGTTGTTTAAATTATTT
1 AATTAAAATTAAATTATTT-AATTATTT
* *
70579826 AATTAAGATTAAATTATTTATTTATTT
1 AATTAAAATTAAATTATTTAATTATTT
70579853 A
1 A
70579854 TTTGGAATAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 8 0.33
28 16 0.67
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (27 bp):
AATTAAAATTAAATTATTTAATTATTT
Found at i:70581212 original size:46 final size:46
Alignment explanation
Indices: 70581162--70581279 Score: 130
Period size: 46 Copynumber: 2.6 Consensus size: 46
70581152 TACTGCATGT
*
70581162 GTTGCGGACTTAAGAATACAAGAATAGGTTCTGAGC-TCATGCATAA
1 GTTGCGGACTTAAGAATACAAGAATAGGTTCCGAGCTTC-TGCATAA
* * ** *
70581208 GTTGCAGACTTAAGAATACAGGTTTAGGTTCCGAGCTTCTGCATAT
1 GTTGCGGACTTAAGAATACAAGAATAGGTTCCGAGCTTCTGCATAA
* ** *
70581254 GTTACGGACTCGAGAATACATGAATA
1 GTTGCGGACTTAAGAATACAAGAATA
70581280 TTAAGCCCTG
Statistics
Matches: 58, Mismatches: 13, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
46 56 0.97
47 2 0.03
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (46 bp):
GTTGCGGACTTAAGAATACAAGAATAGGTTCCGAGCTTCTGCATAA
Found at i:70599582 original size:16 final size:16
Alignment explanation
Indices: 70599561--70599593 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
70599551 ATTCCAATGA
70599561 ACCTTCATTGAGACAG
1 ACCTTCATTGAGACAG
70599577 ACCTTCATTGAGACAG
1 ACCTTCATTGAGACAG
70599593 A
1 A
70599594 AGAGCTATGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.24
Consensus pattern (16 bp):
ACCTTCATTGAGACAG
Found at i:70603140 original size:13 final size:13
Alignment explanation
Indices: 70603122--70603147 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
70603112 AACATCAAAC
70603122 CATAAACACACGA
1 CATAAACACACGA
70603135 CATAAACACACGA
1 CATAAACACACGA
70603148 GCGTGGTGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.31, G:0.08, T:0.08
Consensus pattern (13 bp):
CATAAACACACGA
Found at i:70606590 original size:30 final size:30
Alignment explanation
Indices: 70606550--70606631 Score: 137
Period size: 30 Copynumber: 2.7 Consensus size: 30
70606540 CCCTAGCCAT
*
70606550 CTTGCTTCCCACTTGCACCTACTCCACCAC
1 CTTGCCTCCCACTTGCACCTACTCCACCAC
70606580 CTTGCCTCCCACTTGCACCTACTCCACCAC
1 CTTGCCTCCCACTTGCACCTACTCCACCAC
* *
70606610 CTTGTCTTCCACTTGCACCTAC
1 CTTGCCTCCCACTTGCACCTAC
70606632 ACCATCAAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 49 1.00
ACGTcount: A:0.16, C:0.49, G:0.07, T:0.28
Consensus pattern (30 bp):
CTTGCCTCCCACTTGCACCTACTCCACCAC
Found at i:70607148 original size:3 final size:3
Alignment explanation
Indices: 70607137--70607219 Score: 59
Period size: 3 Copynumber: 27.3 Consensus size: 3
70607127 TTTATTTTTT
* *
70607137 TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TTA TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA
70607180 TCTCA TGTA TATA TTA TTA TT- TATA TTA TTA TTA -TA TTA T
1 T-T-A T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA TTA TTA T
70607220 ATATACCCTC
Statistics
Matches: 65, Mismatches: 6, Indels: 18
0.73 0.07 0.20
Matches are distributed among these distances:
2 7 0.11
3 49 0.75
4 7 0.11
5 2 0.03
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:70607194 original size:21 final size:18
Alignment explanation
Indices: 70607141--70607223 Score: 87
Period size: 18 Copynumber: 4.4 Consensus size: 18
70607131 TTTTTTTTAT
* *
70607141 TTTATTATTTTTACTATTA
1 TTTA-TATTATTATTATTA
70607160 TTTATATTATTATTATTA
1 TTTATATTATTATTATTA
*
70607178 TTTCTCATGTATATATTATTA
1 TTTAT-AT-TAT-TATTATTA
70607199 TTTATATTATTATTA-TA
1 TTTATATTATTATTATTA
70607216 TTATATAT
1 TT-TATAT
70607224 ACCCTCTCCA
Statistics
Matches: 56, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
17 4 0.07
18 26 0.46
19 9 0.16
20 5 0.09
21 12 0.21
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.64
Consensus pattern (18 bp):
TTTATATTATTATTATTA
Found at i:70608615 original size:14 final size:15
Alignment explanation
Indices: 70608587--70608615 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
70608577 TTAAGAATTT
70608587 CTCCCTTTTTATCGA
1 CTCCCTTTTTATCGA
70608602 CTCCCTTTTT-TCGA
1 CTCCCTTTTTATCGA
70608616 GATTTAATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 4 0.29
15 10 0.71
ACGTcount: A:0.10, C:0.34, G:0.07, T:0.48
Consensus pattern (15 bp):
CTCCCTTTTTATCGA
Found at i:70615986 original size:46 final size:45
Alignment explanation
Indices: 70615930--70616105 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 45
70615920 TATTTGGGCA
*
70615930 TCCGAGCTCGTTGAGTTGAGGCCGAGTTCACTTATGGATGCGAACG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAACG
* * * *
70615976 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAAC---G
*
70616021 CATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGGGAACG
1 --TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGAT-GGAACG
* *
70616069 CCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70616106 GTGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 3 0.03
46 61 0.56
47 27 0.25
48 3 0.03
50 3 0.03
51 4 0.04
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29
Consensus pattern (45 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAACG
Found at i:70616085 original size:93 final size:93
Alignment explanation
Indices: 70615926--70616097 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
70615916 CGGATATTTG
*
70615926 GGCATCCGAGCTCGTTGAGTTGAGGCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGGCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
70615991 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * * *
70616019 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGGGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGGCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
*
70616084 TTGAGTTCGAGTTC
66 TTGAGTCCGAGTTC
70616098 ACTTATGGGT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.20, C:0.20, G:0.32, T:0.28
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTTGAGGCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:70618240 original size:30 final size:30
Alignment explanation
Indices: 70618204--70618261 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
70618194 AAATAGTGAG
*
70618204 TTACACGGCCTAGACACACTCCTGTGTGGC
1 TTACACGGCCTAGACACACTCCTATGTGGC
*
70618234 TTACACGGCCTGGACACACTCCTATGTG
1 TTACACGGCCTAGACACACTCCTATGTG
70618262 CTTGGCATTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.21, C:0.33, G:0.22, T:0.24
Consensus pattern (30 bp):
TTACACGGCCTAGACACACTCCTATGTGGC
Found at i:70623085 original size:42 final size:42
Alignment explanation
Indices: 70623039--70623127 Score: 110
Period size: 42 Copynumber: 2.1 Consensus size: 42
70623029 ATGTTATAGT
* *
70623039 ATATCGATGCCAATAG-CCCAG-CTATGGTCTTACACGAATCTC
1 ATATCGATGACAAT-GTCCCAGAC-ATGGTCTTACACAAATCTC
* *
70623081 ATATCGATGACAATGTCTCGGACATGGTCTTACACAAATCTC
1 ATATCGATGACAATGTCCCAGACATGGTCTTACACAAATCTC
70623123 ATATC
1 ATATC
70623128 CCGATAATCC
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
41 1 0.02
42 39 0.95
43 1 0.02
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (42 bp):
ATATCGATGACAATGTCCCAGACATGGTCTTACACAAATCTC
Found at i:70636841 original size:21 final size:21
Alignment explanation
Indices: 70636815--70636855 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
70636805 TATTTTTGAA
70636815 TTATTAATATCATTAATATTG
1 TTATTAATATCATTAATATTG
* *
70636836 TTATTATTATCATTATTATT
1 TTATTAATATCATTAATATT
70636856 ATATGTTAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.34, C:0.05, G:0.02, T:0.59
Consensus pattern (21 bp):
TTATTAATATCATTAATATTG
Found at i:70650707 original size:69 final size:67
Alignment explanation
Indices: 70650536--70650707 Score: 227
Period size: 67 Copynumber: 2.5 Consensus size: 67
70650526 CTTTCCAAGG
* *
70650536 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTTT
70650601 TT
66 TT
* ** * *
70650603 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTT-T
70650668 GTTT
65 -TTT
* ** *
70650672 TAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
70650708 TTTAATTTTT
Statistics
Matches: 91, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
67 56 0.62
68 1 0.01
69 34 0.37
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.34
Consensus pattern (67 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTTT
TT
Found at i:70651197 original size:122 final size:118
Alignment explanation
Indices: 70650796--70651245 Score: 524
Period size: 122 Copynumber: 3.8 Consensus size: 118
70650786 TTTGTTAAAA
* ***
70650796 AAAATCAACTCATATTGCGAG-AATGAGTTGAACCTCGACACGCTGAGGTATTT-ATTTTT-TTT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGACACGCTGAGGTATTTAATTTTTAAAA
* *
70650858 CAAAT-TACTCATATTGC--GAGGTGAGTT-AGCCTTTT-ATTTTT-TTTTTC
66 AAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
** * * * * **
70650905 AAAAATCAACTCATATTGCGAGAGGTGAGTTTGAGCCTCGGCACGCCGAGGTATTTAGTTTATGT
1 -AAAATCAACTCATATTGCGAGAAATGAG-TTGAGCCTCGACACGCTGAGGTATTTAATTTTTAA
*** **
70650970 TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
64 AAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
*
70651025 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTAAATTTTT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC--GACACGCTGAGGTA-TTT-AATTTTT
70651090 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
62 -AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
* *
70651148 -AAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTAAATTTTA
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC--GACACGCTGAGGTA-TTT-AATTTTT
*
70651212 AAAAAAAATCAACTCATATTGCGAGAAGTGAGTT
62 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
70651246 GAGCTCGGGG
Statistics
Matches: 300, Mismatches: 25, Indels: 19
0.87 0.07 0.06
Matches are distributed among these distances:
110 21 0.07
111 4 0.01
112 23 0.08
113 4 0.01
114 7 0.02
115 11 0.04
117 10 0.03
118 17 0.06
119 32 0.11
120 17 0.06
121 36 0.12
122 68 0.23
123 50 0.17
ACGTcount: A:0.32, C:0.14, G:0.19, T:0.36
Consensus pattern (118 bp):
AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGACACGCTGAGGTATTTAATTTTTAAAA
AAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
Found at i:70651358 original size:120 final size:121
Alignment explanation
Indices: 70651214--70651487 Score: 454
Period size: 120 Copynumber: 2.3 Consensus size: 121
70651204 AAATTTTAAA
*
70651214 AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCTCGGGGCACGCCGAGGTATTTTTAGTTTA
1 AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCTC-GGGCACGCCGAGGTA-TTTTAGTTTA
*
70651279 TGTTTTAAATTGACTCATATTGCGA-AGGTGAGTTAAG-CTTTTAA-TTTTGTTTTTC
64 TGTTTTAAACTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
70651334 AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGCACGCCGAGGTATTTTAGTTTAT
1 AAAAAATCAACTCATATTGCGAGAAATGAGTTGAG-CTCGGGCACGCCGAGGTATTTTAGTTTAT
70651399 GTTTTAAACTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
65 GTTTTAAACTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
70651456 ---AAATCAACTCATA-TGCGAGAAATGAGTTGAGC
1 AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGC
70651488 CCAAGACACG
Statistics
Matches: 148, Mismatches: 2, Indels: 11
0.92 0.01 0.07
Matches are distributed among these distances:
117 1 0.01
118 18 0.12
119 47 0.32
120 61 0.41
121 10 0.07
122 11 0.07
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (121 bp):
AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCTCGGGCACGCCGAGGTATTTTAGTTTATG
TTTTAAACTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
Found at i:70651529 original size:189 final size:192
Alignment explanation
Indices: 70651328--70651682 Score: 637
Period size: 190 Copynumber: 1.9 Consensus size: 192
70651318 TTTAATTTTG
*
70651328 TTTTTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC-GGGCACGCCGAGGTA-TTT
1 TTTTTAAAAAAATCAACTCATA-TGCGAGAAATGAGTTGAGCCTCGGGGCACGCCGAGGTATTTT
70651391 TAGTTTATGTTTTAAACTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
65 TAGTTTATGTTTTAAACTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
70651456 -AAATCAACTCATA-TGCGAGAAATGAGTTGAGCCCAAGACACGTTGAGGTATTTTTAAAATT
130 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCCAAGACACGTTGAGGTATTTTTAAAATT
*
70651517 TTTTTAAAAAAATCAACTCATATGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTT
1 TTTTTAAAAAAATCAACTCATATGCGAGAAATGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTT
*
70651582 AGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCA
66 AGTTTATGTTTTAAACTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC-
70651647 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCC
130 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCC
70651683 TCGGGGCACG
Statistics
Matches: 158, Mismatches: 3, Indels: 6
0.95 0.02 0.04
Matches are distributed among these distances:
188 21 0.13
189 36 0.23
190 67 0.42
192 13 0.08
193 21 0.13
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.35
Consensus pattern (192 bp):
TTTTTAAAAAAATCAACTCATATGCGAGAAATGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTT
AGTTTATGTTTTAAACTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCA
AAATCAACTCATATTGCGAGAAATGAGTTGAGCCCAAGACACGTTGAGGTATTTTTAAAATT
Found at i:70651736 original size:124 final size:121
Alignment explanation
Indices: 70651524--70651838 Score: 492
Period size: 124 Copynumber: 2.6 Consensus size: 121
70651514 ATTTTTTTAA
70651524 AAAAATCAACTCATA-TGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
70651588 TGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
66 TGTTTTAAATTGACTCATATTGCGAGAGGTGAG-TAAGCC-TTTAATTTTTGTTTTTC
*
70651646 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCCTCGGGGCACGCCGAGGTATTTTTAGTTT
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAG-CCTCGGGGCACGCCGAGGTATTTTTAGTTT
70651711 ATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTAAGCCTTTAATTTTTGTTTTTC
65 ATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTAAGCCTTTAATTTTTGTTTTTC
* * ** * * *
70651768 -AAAATCAACTCATATTGCAAG-AGGGAGTTGAGCCTCGGCTCACATGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCAC--GCCGAGGTATTTTTAGTT
70651831 TATGTTTT
64 TATGTTTT
70651839 TTTCAATCTA
Statistics
Matches: 180, Mismatches: 9, Indels: 9
0.91 0.05 0.05
Matches are distributed among these distances:
119 9 0.05
120 9 0.05
121 43 0.24
122 32 0.18
123 23 0.13
124 64 0.36
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.36
Consensus pattern (121 bp):
AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
TGTTTTAAATTGACTCATATTGCGAGAGGTGAGTAAGCCTTTAATTTTTGTTTTTC
Found at i:70651843 original size:16 final size:17
Alignment explanation
Indices: 70651822--70651855 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
70651812 TGCTGAGGTA
*
70651822 TTTTCAATTTATG-TTT
1 TTTTCAATCTATGCTTT
70651838 TTTTCAATCTATGCTTT
1 TTTTCAATCTATGCTTT
70651855 T
1 T
70651856 CAAAAATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.18, C:0.12, G:0.06, T:0.65
Consensus pattern (17 bp):
TTTTCAATCTATGCTTT
Found at i:70651986 original size:84 final size:86
Alignment explanation
Indices: 70651763--70652064 Score: 321
Period size: 90 Copynumber: 3.5 Consensus size: 86
70651753 TAATTTTTGT
* * * **
70651763 TTTTCAAAATCAACTCATATTGCAAG-AGGGAGTTGAGCCTCGGCTCACATGCTGAGGTATTTTC
1 TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGAGCAC--GCTGAGGTATTTTC
* * *
70651827 AATTTATGTTTTTTTCAA-TCTATGC
64 AATTTCTGCTTTTCT-AATTCTA--C
* *
70651852 TTTTCAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCA-AGGCACGCTGAGGTATTTTC
1 TTTTC-AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGA-GCACGCTGAGGTATTTT-
*
70651916 CAATTTCTGCTTTACTAATTCTAC
63 CAATTTCTGCTTTTCTAATTCTAC
*
70651940 TTTTC-AAATCAACTCATATTGC-A-AAGTGAGTTGAGCCTCAGAGCACGCTGAGGAATTTTCAA
1 TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGAGCACGCTGAGGTATTTTCAA
* **
70652002 TTTCTACTTTTC-AATTTCTGT
66 TTTCTGCTTTTCTAA-TTCTAC
*
70652023 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 TTTTC-AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
70652065 TTTAATTCTA
Statistics
Matches: 183, Mismatches: 19, Indels: 24
0.81 0.08 0.11
Matches are distributed among these distances:
82 2 0.01
83 22 0.12
84 32 0.17
85 19 0.10
86 17 0.09
87 14 0.08
88 6 0.03
89 20 0.11
90 35 0.19
91 16 0.09
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (86 bp):
TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGAGCACGCTGAGGTATTTTCAA
TTTCTGCTTTTCTAATTCTAC
Found at i:70652098 original size:54 final size:54
Alignment explanation
Indices: 70652008--70652225 Score: 270
Period size: 54 Copynumber: 4.1 Consensus size: 54
70651998 TCAATTTCTA
* *
70652008 CTTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 CTTTT-AAATTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
* *
70652063 CTTTT-AATTCTATTTTTCAAAAAACCAACTAATATTGCGAGAGGTGAGTTGAGC
1 CTTTTAAATTCTATTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
70652117 C-TTT---TTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG-GC
1 CTTTTAAATTCTATTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
* * *
70652168 CTTTTGTAAATTCT-GTTTTCAAAAATCAACTTATATTGCGAGAAGTGAGTTGAGC
1 C-TTT-TAAATTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
70652223 CTT
1 CTT
70652226 GGCTCACGTG
Statistics
Matches: 145, Mismatches: 9, Indels: 19
0.84 0.05 0.11
Matches are distributed among these distances:
51 14 0.10
52 31 0.21
53 16 0.11
54 67 0.46
55 8 0.06
56 5 0.03
57 4 0.03
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.38
Consensus pattern (54 bp):
CTTTTAAATTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
Found at i:70652204 original size:106 final size:104
Alignment explanation
Indices: 70652016--70652225 Score: 309
Period size: 106 Copynumber: 2.0 Consensus size: 104
70652006 TACTTTTCAA
* *
70652016 TTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTCTATTTTTC
1 TTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTCTAGTTTTC
*
70652081 AAAAAACCAACTAATATTGCGAGAGGTGAGTTGAGCCTT
66 AAAAAACCAACTAATATTGCGAGAAGTGAGTTGAGCCTT
70652120 TTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG-GCCTTTTGTAAATTCT-G
1 TTTCTATTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TTT-T-AATTCTAG
* *
70652183 TTTTC-AAAAATCAACTTATATTGCGAGAAGTGAGTTGAGCCTT
61 TTTTCAAAAAACCAACTAATATTGCGAGAAGTGAGTTGAGCCTT
70652226 GGCTCACGTG
Statistics
Matches: 96, Mismatches: 5, Indels: 8
0.88 0.05 0.07
Matches are distributed among these distances:
104 11 0.11
105 3 0.03
106 70 0.73
107 6 0.06
108 6 0.06
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.37
Consensus pattern (104 bp):
TTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTCTAGTTTTC
AAAAAACCAACTAATATTGCGAGAAGTGAGTTGAGCCTT
Done.