Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 213 of 255
Found at i:71273403 original size:19 final size:20
Alignment explanation
Indices: 71273356--71273405 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
71273346 TAAACTATTT
*
71273356 CAACCCAAAT-GAGCTAAAT
1 CAACCCAAATGGAGCTAAAA
*
71273375 GAAGCCCAAATGGA-CTAAAA
1 CAA-CCCAAATGGAGCTAAAA
71273395 CAACCCAAATG
1 CAACCCAAATG
71273406 TCCATATTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
19 10 0.38
20 14 0.54
21 2 0.08
ACGTcount: A:0.48, C:0.26, G:0.14, T:0.12
Consensus pattern (20 bp):
CAACCCAAATGGAGCTAAAA
Found at i:71276569 original size:22 final size:22
Alignment explanation
Indices: 71276524--71276583 Score: 84
Period size: 22 Copynumber: 2.7 Consensus size: 22
71276514 CCACAACTCG
*
71276524 TATGAGCTTACCGTTTTAGCTCT
1 TATGAGCTTACCG-TTCAGCTCT
71276547 TATGAGCTTACCGTTCAGCTCT
1 TATGAGCTTACCGTTCAGCTCT
**
71276569 TCGGAGCTTACCGTT
1 TATGAGCTTACCGTT
71276584 TCAGTCCTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
22 21 0.62
23 13 0.38
ACGTcount: A:0.17, C:0.25, G:0.20, T:0.38
Consensus pattern (22 bp):
TATGAGCTTACCGTTCAGCTCT
Found at i:71276602 original size:45 final size:46
Alignment explanation
Indices: 71276527--71276630 Score: 124
Period size: 46 Copynumber: 2.3 Consensus size: 46
71276517 CAACTCGTAT
* * *
71276527 GAGCTTACCGTTTTAGCTCTTATGAGCTTACC-GTTCAGCTCTTCG
1 GAGCTTACCGTTTCAGCTCTTAGGAGCTTACCAGTTCAGCTCTACG
*
71276572 GAGCTTACCGTTTCAG-TCCTTAAGGA-CTTACCATTTCAGCTCTACG
1 GAGCTTACCGTTTCAGCT-CTT-AGGAGCTTACCAGTTCAGCTCTACG
*
71276618 GAGCTTACTGTTT
1 GAGCTTACCGTTT
71276631 ATCGGCTCAA
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
44 1 0.02
45 24 0.47
46 26 0.51
ACGTcount: A:0.18, C:0.26, G:0.19, T:0.37
Consensus pattern (46 bp):
GAGCTTACCGTTTCAGCTCTTAGGAGCTTACCAGTTCAGCTCTACG
Found at i:71276624 original size:23 final size:24
Alignment explanation
Indices: 71276527--71276630 Score: 112
Period size: 23 Copynumber: 4.5 Consensus size: 24
71276517 CAACTCGTAT
* *
71276527 GAGCTTACCGTTTTAGCTCTTA-T
1 GAGCTTACCGTTTCAGCTCTTACG
71276550 GAGCTTACCG-TTCAGCTCTT-CG
1 GAGCTTACCGTTTCAGCTCTTACG
*
71276572 GAGCTTACCGTTTCAG-TCCTTAAG
1 GAGCTTACCGTTTCAGCT-CTTACG
*
71276596 GA-CTTACCATTTCAGCTC-TACG
1 GAGCTTACCGTTTCAGCTCTTACG
*
71276618 GAGCTTACTGTTT
1 GAGCTTACCGTTT
71276631 ATCGGCTCAA
Statistics
Matches: 68, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
22 25 0.37
23 39 0.57
24 4 0.06
ACGTcount: A:0.18, C:0.26, G:0.19, T:0.37
Consensus pattern (24 bp):
GAGCTTACCGTTTCAGCTCTTACG
Found at i:71280285 original size:12 final size:12
Alignment explanation
Indices: 71280268--71280292 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
71280258 GTTCAAAGTG
71280268 AAAATTAAATTA
1 AAAATTAAATTA
71280280 AAAATTAAATTA
1 AAAATTAAATTA
71280292 A
1 A
71280293 TTGGTCATCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
AAAATTAAATTA
Found at i:71285361 original size:23 final size:25
Alignment explanation
Indices: 71285317--71285364 Score: 64
Period size: 27 Copynumber: 1.9 Consensus size: 25
71285307 AACAAAATAG
71285317 AAAGAAAGAAAGACGTAGAAAAAATGT
1 AAAGAAAGAAAGAC--AGAAAAAATGT
71285344 AAAGAAAGAAAGA-A-AAAAAAT
1 AAAGAAAGAAAGACAGAAAAAAT
71285365 AAAAGATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 7 0.33
24 1 0.05
27 13 0.62
ACGTcount: A:0.71, C:0.02, G:0.19, T:0.08
Consensus pattern (25 bp):
AAAGAAAGAAAGACAGAAAAAATGT
Found at i:71285458 original size:21 final size:23
Alignment explanation
Indices: 71285428--71285475 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 23
71285418 AATTATTAGT
*
71285428 TTTTGAAAAATATAT-TTTTATA
1 TTTTGAAAAATATATATTTAATA
*
71285450 TTTT-AAAAATATGTATTTAATA
1 TTTTGAAAAATATATATTTAATA
71285472 TTTT
1 TTTT
71285476 TTCATTAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 9 0.39
22 14 0.61
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (23 bp):
TTTTGAAAAATATATATTTAATA
Found at i:71285534 original size:17 final size:17
Alignment explanation
Indices: 71285487--71285550 Score: 53
Period size: 17 Copynumber: 3.8 Consensus size: 17
71285477 TCATTAATAT
71285487 TTTTTTTGA-AATTTTATA
1 TTTTTTT-ACAATTTT-TA
* *
71285505 TGTTTTT-CTATTTTTA
1 TTTTTTTACAATTTTTA
71285521 TTTTTTTACAATTTTT-
1 TTTTTTTACAATTTTTA
*
71285537 TTATTTTTAAAATT
1 TT-TTTTTACAATT
71285551 GTTTGCTAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
16 10 0.26
17 22 0.58
18 6 0.16
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.70
Consensus pattern (17 bp):
TTTTTTTACAATTTTTA
Found at i:71286371 original size:21 final size:22
Alignment explanation
Indices: 71286340--71286392 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
71286330 GATATGATAT
* *
71286340 TAATACTTTAAAGATTT-AATTA
1 TAATA-TTTAAAAATTTAAATGA
71286362 TAATATTTAAAAATTTAAATGA
1 TAATATTTAAAAATTTAAATGA
71286384 TAAT-TTTAA
1 TAATATTTAA
71286393 GACATTTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 15 0.54
22 13 0.46
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (22 bp):
TAATATTTAAAAATTTAAATGA
Found at i:71288836 original size:22 final size:22
Alignment explanation
Indices: 71288806--71288847 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
71288796 TAAGTTAATT
*
71288806 TTTTTCTTTTATGTTCTTTAAA
1 TTTTCCTTTTATGTTCTTTAAA
* *
71288828 TTTTCCTTTTTTTTTCTTTA
1 TTTTCCTTTTATGTTCTTTA
71288848 TTTTCCATTC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.12, C:0.12, G:0.02, T:0.74
Consensus pattern (22 bp):
TTTTCCTTTTATGTTCTTTAAA
Found at i:71289255 original size:149 final size:151
Alignment explanation
Indices: 71288985--71289381 Score: 548
Period size: 149 Copynumber: 2.6 Consensus size: 151
71288975 ACCCATACCA
* * * *
71288985 TGCTTCTTTATTCACTGCTAATTCAACTTCCTGATATGTTAAAAGAAATAGAGAATGTAAGAAAA
1 TGCTTCTTTCTTCACTGCCAATTCAACTTCCTGATATGTTAAAAGAAATAGAGAAGGTAGGAAAA
* *
71289050 CAGAGGGAGAAGCAAAAGAGAATGAAAGAAGCATGGTATGGGTTTATGAGTTTTGGTTATAGCCA
66 CAGAGGGAGAAGAAAAAGAGAATGAAAGAAGCATGATATGGGTTTATGAGTTTTGGTTATAGCCA
71289115 ATG-A-TGGCTTTTGACTTCC
131 ATGAATTGGCTTTTGACTTCC
* * * *
71289134 TGCTTCTTTCTTCACTACCAATTCGACTTCCTGATATGTTAAAAGAAATGGATAAGGTAGGAAAA
1 TGCTTCTTTCTTCACTGCCAATTCAACTTCCTGATATGTTAAAAGAAATAGAGAAGGTAGGAAAA
* * *
71289199 CAGAGGAAGAAGAAAAAGAGAATGAAAGAAGCATGATATGGGTTTATGGGTTTTGGTTATAGGCA
66 CAGAGGGAGAAGAAAAAGAGAATGAAAGAAGCATGATATGGGTTTATGAGTTTTGGTTATAGCCA
*
71289264 ATGATAGCTTTTGGCTTTTGGCTTCC
131 ATGA-A----TTGGCTTTTGACTTCC
* * * *
71289290 TACTTCTATCTTCACTGCCAATTCAACTTCCTGATATGTTAAAAGAAATCGAGAAGTTAGGAAAA
1 TGCTTCTTTCTTCACTGCCAATTCAACTTCCTGATATGTTAAAAGAAATAGAGAAGGTAGGAAAA
*
71289355 CAGAGGGAGAA-ACAGAAGAGAATGAAA
66 CAGAGGGAGAAGA-AAAAGAGAATGAAA
71289382 AAAAAAAGAA
Statistics
Matches: 217, Mismatches: 23, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
149 120 0.55
151 1 0.00
155 1 0.00
156 95 0.44
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.29
Consensus pattern (151 bp):
TGCTTCTTTCTTCACTGCCAATTCAACTTCCTGATATGTTAAAAGAAATAGAGAAGGTAGGAAAA
CAGAGGGAGAAGAAAAAGAGAATGAAAGAAGCATGATATGGGTTTATGAGTTTTGGTTATAGCCA
ATGAATTGGCTTTTGACTTCC
Found at i:71292542 original size:18 final size:17
Alignment explanation
Indices: 71292519--71292557 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
71292509 GATGTGAGTG
71292519 AAAAATAAAATTATACAA
1 AAAAATAAAATTATA-AA
* *
71292537 AAAAATATATTTATAAA
1 AAAAATAAAATTATAAA
71292554 AAAA
1 AAAA
71292558 TTTAAAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.26
Consensus pattern (17 bp):
AAAAATAAAATTATAAA
Found at i:71293623 original size:34 final size:34
Alignment explanation
Indices: 71293575--71293644 Score: 113
Period size: 34 Copynumber: 2.1 Consensus size: 34
71293565 AATTGTCAAT
71293575 TTAAAATGTTTGTTTTTCGTTAACTACACGTCTC
1 TTAAAATGTTTGTTTTTCGTTAACTACACGTCTC
* * *
71293609 TTAACATGTTTGTTTTTTGTTAACTACATGTCTC
1 TTAAAATGTTTGTTTTTCGTTAACTACACGTCTC
71293643 TT
1 TT
71293645 CATATGAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.21, C:0.16, G:0.11, T:0.51
Consensus pattern (34 bp):
TTAAAATGTTTGTTTTTCGTTAACTACACGTCTC
Found at i:71293755 original size:29 final size:29
Alignment explanation
Indices: 71293722--71293784 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 29
71293712 ACTAATATAC
*
71293722 CAAAAAAGGCCCA-TTTTTTTAAAAATTA
1 CAAAAAAGGCCCACTTTTGTTAAAAATTA
* * *
71293750 CAAAAATGGGCCACTTTTGTTGAAAATTA
1 CAAAAAAGGCCCACTTTTGTTAAAAATTA
71293779 CAAAAA
1 CAAAAA
71293785 TGAGCCGAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 11 0.37
29 19 0.63
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.29
Consensus pattern (29 bp):
CAAAAAAGGCCCACTTTTGTTAAAAATTA
Found at i:71294104 original size:17 final size:17
Alignment explanation
Indices: 71294078--71294119 Score: 66
Period size: 17 Copynumber: 2.4 Consensus size: 17
71294068 TCTCTTAATT
*
71294078 TTTTTTTCTAAATTCTA
1 TTTTTATCTAAATTCTA
71294095 TTTTTATCTAAATTCTA
1 TTTTTATCTAAATTCTA
71294112 TTTATTAT
1 TTT-TTAT
71294120 TATTGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 19 0.83
18 4 0.17
ACGTcount: A:0.26, C:0.10, G:0.00, T:0.64
Consensus pattern (17 bp):
TTTTTATCTAAATTCTA
Found at i:71296335 original size:26 final size:26
Alignment explanation
Indices: 71296299--71296356 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
71296289 GTACGTATCG
*
71296299 ATTCCCAACCACTAGAAGTTACTGCT
1 ATTCCCAACCACTAGAAGTTACTGCC
*
71296325 ATTCCCAACCACTAGAAGTTGCTGCC
1 ATTCCCAACCACTAGAAGTTACTGCC
71296351 ATTCCC
1 ATTCCC
71296357 TAGTAAGTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.28, C:0.34, G:0.12, T:0.26
Consensus pattern (26 bp):
ATTCCCAACCACTAGAAGTTACTGCC
Found at i:71301481 original size:7 final size:7
Alignment explanation
Indices: 71301471--71301500 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
71301461 CACATTTCAC
71301471 TATTATG
1 TATTATG
71301478 TATTATG
1 TATTATG
71301485 TATTATG
1 TATTATG
71301492 TATTTATG
1 TA-TTATG
71301500 T
1 T
71301501 CTTTTATATT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 16 0.73
8 6 0.27
ACGTcount: A:0.27, C:0.00, G:0.13, T:0.60
Consensus pattern (7 bp):
TATTATG
Found at i:71303217 original size:31 final size:29
Alignment explanation
Indices: 71303182--71303239 Score: 71
Period size: 31 Copynumber: 1.9 Consensus size: 29
71303172 AGTAGTATTT
*
71303182 TATTAATTTAATATTAAAGTGATTATCTTAA
1 TATTAAATTAA-ATTAAA-TGATTATCTTAA
* *
71303213 TATTAAATTAAATTTAATGTTTATCTT
1 TATTAAATTAAATTAAATGATTATCTT
71303240 GTAGATAAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 9 0.38
30 5 0.21
31 10 0.42
ACGTcount: A:0.40, C:0.03, G:0.05, T:0.52
Consensus pattern (29 bp):
TATTAAATTAAATTAAATGATTATCTTAA
Found at i:71304557 original size:22 final size:22
Alignment explanation
Indices: 71304510--71304581 Score: 99
Period size: 22 Copynumber: 3.2 Consensus size: 22
71304500 AACACTTAAA
*
71304510 AATTAAATAAAACACTAAAACCCT
1 AATTTAAT-AAACACT-AAACCCT
* *
71304534 AATTTAATTAACACTAAACTCT
1 AATTTAATAAACACTAAACCCT
71304556 AATTTAATAAACACTAAACCCT
1 AATTTAATAAACACTAAACCCT
71304578 AATT
1 AATT
71304582 AAACAATTAA
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
22 30 0.70
23 6 0.14
24 7 0.16
ACGTcount: A:0.51, C:0.19, G:0.00, T:0.29
Consensus pattern (22 bp):
AATTTAATAAACACTAAACCCT
Found at i:71311376 original size:26 final size:26
Alignment explanation
Indices: 71311347--71311428 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
71311337 TGGTACAAAT
71311347 TGATAATGGGTTAGGTAAATGTTCTA
1 TGATAATGGGTTAGGTAAATGTTCTA
*
71311373 TGATAATGGGTTAGGTAACTGTTCTA
1 TGATAATGGGTTAGGTAAATGTTCTA
* *
71311399 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCTA
71311425 TGAT
1 TGAT
71311429 GGGCATTTCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.29, C:0.06, G:0.26, T:0.39
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCTA
Found at i:71322579 original size:24 final size:24
Alignment explanation
Indices: 71322528--71322622 Score: 140
Period size: 24 Copynumber: 4.0 Consensus size: 24
71322518 GCTTTATCAT
*
71322528 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
71322553 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
71322577 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
71322600 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
71322623 GCACTTCCTC
Statistics
Matches: 65, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
23 23 0.35
24 30 0.46
25 12 0.18
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:71322603 original size:23 final size:23
Alignment explanation
Indices: 71322549--71322621 Score: 128
Period size: 23 Copynumber: 3.1 Consensus size: 23
71322539 CCTAGCCTCT
*
71322549 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
71322572 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
71322596 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
71322619 TTT
1 TTT
71322622 TGCACTTCCT
Statistics
Matches: 48, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
23 26 0.54
24 22 0.46
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:71322695 original size:20 final size:20
Alignment explanation
Indices: 71322670--71322736 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
71322660 TTATGAATAC
71322670 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
71322690 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
71322710 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
71322730 ACCATGT
1 ATCATGT
71322737 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:71322701 original size:11 final size:11
Alignment explanation
Indices: 71322670--71322725 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
71322660 TTATGAATAC
71322670 ATCATGTGCAT
1 ATCATGTGCAT
*
71322681 ATCA--TACAT
1 ATCATGTGCAT
71322690 ATCATGTGCAT
1 ATCATGTGCAT
*
71322701 ATCA--TACAT
1 ATCATGTGCAT
*
71322710 GTCATGTGCAT
1 ATCATGTGCAT
71322721 ATCAT
1 ATCAT
71322726 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:71322815 original size:25 final size:25
Alignment explanation
Indices: 71322773--71322820 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
71322763 ATATTTAAAC
* * *
71322773 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
71322798 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
71322821 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:71324336 original size:14 final size:15
Alignment explanation
Indices: 71324317--71324347 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
71324307 CTTACAGTAA
71324317 TATTTTCTA-ATAAT
1 TATTTTCTATATAAT
71324331 TATTTTCTATATAAT
1 TATTTTCTATATAAT
71324346 TA
1 TA
71324348 AATTCATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.56
15 7 0.44
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.58
Consensus pattern (15 bp):
TATTTTCTATATAAT
Found at i:71330777 original size:13 final size:13
Alignment explanation
Indices: 71330759--71330785 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
71330749 CCACCTTAGA
71330759 AATCCAACCATAT
1 AATCCAACCATAT
71330772 AATCCAACCATAT
1 AATCCAACCATAT
71330785 A
1 A
71330786 CTTTTATTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.30, G:0.00, T:0.22
Consensus pattern (13 bp):
AATCCAACCATAT
Found at i:71331666 original size:16 final size:16
Alignment explanation
Indices: 71331645--71331690 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
71331635 TTATTAAATT
71331645 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
71331661 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
71331676 AT-TATGTTAAATTAT
1 ATATAT-TTTAATTAT
71331691 CTATATTATG
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
14 2 0.08
15 11 0.44
16 12 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:71331699 original size:107 final size:108
Alignment explanation
Indices: 71331585--71331795 Score: 388
Period size: 107 Copynumber: 2.0 Consensus size: 108
71331575 TATAGTATTA
* * *
71331585 TATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATA
1 TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAAAATTTTATTAAATTATATA
71331650 TTTTAATTATAATATATTTAATAATAATTATG-TTAAATTATC
66 TTTTAATTATAATATATTTAATAATAATTATGTTTAAATTATC
71331692 TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAAAATTTTATTAAATTATATA
1 TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAAAATTTTATTAAATTATATA
71331757 TTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
66 TTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
71331796 ATGATTAAAT
Statistics
Matches: 100, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
107 94 0.94
108 6 0.06
ACGTcount: A:0.44, C:0.01, G:0.05, T:0.49
Consensus pattern (108 bp):
TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAAAATTTTATTAAATTATATA
TTTTAATTATAATATATTTAATAATAATTATGTTTAAATTATC
Found at i:71331773 original size:16 final size:16
Alignment explanation
Indices: 71331752--71331793 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
71331742 TTATTAAATT
*
71331752 ATATATTTTAATTATA
1 ATATATTTTAATAATA
71331768 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
71331783 AT-TATGTTTAA
1 ATATAT-TTTAA
71331794 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:71331778 original size:15 final size:15
Alignment explanation
Indices: 71331743--71331784 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
71331733 TTAAAAATTT
*
71331743 TATTAAATTAT-ATA
1 TATTTAATTATAATA
71331757 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
71331771 TATTTAATAATAAT
1 TATTTAATTATAAT
71331785 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:71332019 original size:45 final size:44
Alignment explanation
Indices: 71331919--71332028 Score: 133
Period size: 45 Copynumber: 2.6 Consensus size: 44
71331909 TTTTCCATTA
71331919 TGCTATTACACCTCTATT-C----CATTCAACCAAACATAAGAT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACATAAGAT
* * *
71331958 TACTATTACGCCTCTATTCCATTACATTCAACCAAACAGT-TGATT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACA-TAAGA-T
71332003 TGCTATTACACCTCTATTCCATTACA
1 TGCTATTACACCTCTATTCCATTACA
71332029 CCTCTAATCC
Statistics
Matches: 59, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
39 16 0.27
40 1 0.02
44 16 0.27
45 26 0.44
ACGTcount: A:0.32, C:0.28, G:0.05, T:0.35
Consensus pattern (44 bp):
TGCTATTACACCTCTATTCCATTACATTCAACCAAACATAAGAT
Found at i:71332028 original size:16 final size:16
Alignment explanation
Indices: 71332009--71332076 Score: 100
Period size: 16 Copynumber: 4.2 Consensus size: 16
71331999 GATTTGCTAT
* *
71332009 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
71332025 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
71332041 TACACCTCCAATCCAA
1 TACACCTCTAATCCAA
*
71332057 TAGACCTCTAATCCAA
1 TACACCTCTAATCCAA
71332073 TACA
1 TACA
71332077 GTGAATCAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 46 1.00
ACGTcount: A:0.35, C:0.37, G:0.01, T:0.26
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:71333188 original size:61 final size:61
Alignment explanation
Indices: 71333120--71333273 Score: 157
Period size: 61 Copynumber: 2.5 Consensus size: 61
71333110 CTATATTTTT
* * * *
71333120 AATTTTTAGAGTTAGGACTAAATTGATAGATTTTTGTAAATGTTGAAGGCTAAATTTATTG
1 AATTTTTAGAATTAGGACTAAATTGATAGAATTTTGTAAATATTGAAAGCTAAATTTATTG
** * * * * * *
71333181 AATTTTTAGAATTAAAACCAAAATGACA-AATTTTGTAAATATTTAAAGTTAAATTTTTTG
1 AATTTTTAGAATTAGGACTAAATTGATAGAATTTTGTAAATATTGAAAGCTAAATTTATTG
* * *
71333241 AATTTTTTACATTTAGGATTAAATTGATAGAAT
1 AA-TTTTTAGAATTAGGACTAAATTGATAGAAT
71333274 ATATAAATAT
Statistics
Matches: 71, Mismatches: 20, Indels: 3
0.76 0.21 0.03
Matches are distributed among these distances:
60 28 0.39
61 40 0.56
62 3 0.04
ACGTcount: A:0.40, C:0.04, G:0.14, T:0.43
Consensus pattern (61 bp):
AATTTTTAGAATTAGGACTAAATTGATAGAATTTTGTAAATATTGAAAGCTAAATTTATTG
Found at i:71333801 original size:12 final size:13
Alignment explanation
Indices: 71333784--71333812 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
71333774 TGCTTTTAAG
71333784 TTATTTGATA-TA
1 TTATTTGATATTA
71333796 TTATTTGATATTA
1 TTATTTGATATTA
71333809 TTAT
1 TTAT
71333813 ATTTAATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.31, C:0.00, G:0.07, T:0.62
Consensus pattern (13 bp):
TTATTTGATATTA
Found at i:71335607 original size:55 final size:55
Alignment explanation
Indices: 71335470--71335608 Score: 215
Period size: 55 Copynumber: 2.5 Consensus size: 55
71335460 AAAAATAGAG
*
71335470 TGTTTATATGTTTAAATCGATTGTTATATCGGAATATTGATTCTTTTGAATCGAT
1 TGTTTATATGTTTAAATCGATTGTTATGTCGGAATATTGATTCTTTTGAATCGAT
* * * * * *
71335525 TATTTATACGTTTAAACCGATTATTATGTTGGAATATTGCTTCTTTTGAATCGAT
1 TGTTTATATGTTTAAATCGATTGTTATGTCGGAATATTGATTCTTTTGAATCGAT
71335580 TGTTTATATGTTTAAATCGATTGTTATGT
1 TGTTTATATGTTTAAATCGATTGTTATGT
71335609 AACACATCTA
Statistics
Matches: 73, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
55 73 1.00
ACGTcount: A:0.27, C:0.08, G:0.16, T:0.50
Consensus pattern (55 bp):
TGTTTATATGTTTAAATCGATTGTTATGTCGGAATATTGATTCTTTTGAATCGAT
Found at i:71336423 original size:10 final size:9
Alignment explanation
Indices: 71336379--71336508 Score: 77
Period size: 9 Copynumber: 14.1 Consensus size: 9
71336369 GTGGCAAAAG
71336379 AATTATAAA
1 AATTATAAA
71336388 AA--ATAAA
1 AATTATAAA
*
71336395 AATAAATAAA
1 AAT-TATAAA
* *
71336405 AGTAATAAA
1 AATTATAAA
71336414 AATTATTAAA
1 AATTA-TAAA
**
71336424 TCTTAATAAA
1 AATT-ATAAA
71336434 AA-TATAAA
1 AATTATAAA
* *
71336442 AAATATTAA
1 AATTATAAA
*
71336451 AATGATATAA
1 AATTATA-AA
71336461 AATTATAAA
1 AATTATAAA
*
71336470 AATCATAAAA
1 AATTAT-AAA
*
71336480 AATTGTAAA
1 AATTATAAA
*
71336489 ATTTTATAAA
1 A-ATTATAAA
*
71336499 AAATATAAA
1 AATTATAAA
71336508 A
1 A
71336509 TGCATCAAAA
Statistics
Matches: 93, Mismatches: 19, Indels: 18
0.72 0.15 0.14
Matches are distributed among these distances:
7 7 0.08
8 7 0.08
9 39 0.42
10 39 0.42
11 1 0.01
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (9 bp):
AATTATAAA
Found at i:71336471 original size:19 final size:18
Alignment explanation
Indices: 71336390--71336499 Score: 71
Period size: 19 Copynumber: 5.9 Consensus size: 18
71336380 ATTATAAAAA
* *
71336390 ATAAAAATAAATAAAAGTA
1 ATAAAAATATATAAAA-TT
*
71336409 ATAAAAAT-TATTAAATCTT
1 ATAAAAATATA-TAAA-ATT
*
71336428 AATAAAAATATA-AAAAAT
1 -ATAAAAATATATAAAATT
*
71336446 ATTAAAATGATATAAAATT
1 ATAAAAAT-ATATAAAATT
*
71336465 ATAAAAATCATAAAAAATT
1 ATAAAAAT-ATATAAAATT
* * *
71336484 GTAAAATTTTATAAAA
1 ATAAAAATATATAAAA
71336500 AATATAAAAT
Statistics
Matches: 71, Mismatches: 14, Indels: 13
0.72 0.14 0.13
Matches are distributed among these distances:
17 7 0.10
18 11 0.15
19 43 0.61
20 8 0.11
21 2 0.03
ACGTcount: A:0.65, C:0.02, G:0.03, T:0.31
Consensus pattern (18 bp):
ATAAAAATATATAAAATT
Found at i:71336480 original size:28 final size:26
Alignment explanation
Indices: 71336379--71336508 Score: 77
Period size: 29 Copynumber: 4.7 Consensus size: 26
71336369 GTGGCAAAAG
*
71336379 AATTATAAAAA-ATAAAAATAAATAA
1 AATTATAAAAATATAAAAATATATAA
* * *
71336404 AAGTAATAAAAAT-TATTAAATCTTAATAA
1 AA-TTATAAAAATATA-AAAAT-AT-ATAA
* *
71336433 AAATATAAAAAATATTAAAATGATATAA
1 AATTAT-AAAAATATAAAAAT-ATATAA
*
71336461 AATTATAAAAATCATAAAAA-ATTGTAA
1 AATTATAAAAAT-ATAAAAATA-TATAA
71336488 AATTTTATAAAAAATATAAAA
1 AA--TTAT-AAAAATATAAAA
71336509 TGCATCAAAA
Statistics
Matches: 80, Mismatches: 13, Indels: 20
0.71 0.12 0.18
Matches are distributed among these distances:
25 2 0.03
26 11 0.14
27 16 0.20
28 17 0.21
29 27 0.34
30 7 0.09
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (26 bp):
AATTATAAAAATATAAAAATATATAA
Found at i:71336507 original size:19 final size:19
Alignment explanation
Indices: 71336436--71336509 Score: 64
Period size: 19 Copynumber: 3.9 Consensus size: 19
71336426 TTAATAAAAA
71336436 TATAAAAAATATTAAAATGA-
1 TATAAAAAATA-TAAAAT-AT
*
71336456 TAT-AAAATTATAAAA-AT
1 TATAAAAAATATAAAATAT
* * *
71336473 CATAAAAAATTGTAAAATTT
1 TATAAAAAA-TATAAAATAT
71336493 TATAAAAAATATAAAAT
1 TATAAAAAATATAAAAT
71336510 GCATCAAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 9
0.73 0.12 0.15
Matches are distributed among these distances:
16 1 0.02
17 2 0.05
18 9 0.21
19 19 0.44
20 12 0.28
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.32
Consensus pattern (19 bp):
TATAAAAAATATAAAATAT
Found at i:71336709 original size:21 final size:20
Alignment explanation
Indices: 71336685--71336755 Score: 60
Period size: 19 Copynumber: 3.6 Consensus size: 20
71336675 ACGATAATTC
71336685 TTTATAATTTTTTTTACGAAT
1 TTTATAA-TTTTTTTACGAAT
* *
71336706 TTTAT-ATTTCTTTAC-ATTT
1 TTTATAATTTTTTTACGA-AT
*
71336725 TTTATAATTTTCTTACG-A-
1 TTTATAATTTTTTTACGAAT
71336743 TTTATAATATTTT
1 TTTATAAT-TTTT
71336756 ATAATTTTTT
Statistics
Matches: 40, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
18 9 0.22
19 17 0.43
20 9 0.22
21 5 0.12
ACGTcount: A:0.27, C:0.07, G:0.03, T:0.63
Consensus pattern (20 bp):
TTTATAATTTTTTTACGAAT
Found at i:71336754 original size:20 final size:20
Alignment explanation
Indices: 71336685--71336755 Score: 53
Period size: 20 Copynumber: 3.6 Consensus size: 20
71336675 ACGATAATTC
*
71336685 TTTATAAT-TTTTTTTACGAA
1 TTTATAATATTTTCTTACG-A
71336705 TTT-T-ATA-TTTCTTTAC-A
1 TTTATAATATTTTC-TTACGA
* *
71336722 TTTTTTATAATTTTCTTACGA
1 TTTATAAT-ATTTTCTTACGA
71336743 TTTATAATATTTT
1 TTTATAATATTTT
71336756 ATAATTTTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 14
0.71 0.05 0.24
Matches are distributed among these distances:
17 4 0.10
18 6 0.15
19 7 0.17
20 13 0.32
21 11 0.27
ACGTcount: A:0.27, C:0.07, G:0.03, T:0.63
Consensus pattern (20 bp):
TTTATAATATTTTCTTACGA
Found at i:71336755 original size:28 final size:28
Alignment explanation
Indices: 71336724--71336819 Score: 81
Period size: 30 Copynumber: 3.4 Consensus size: 28
71336714 TCTTTACATT
71336724 TTTTATAATTTTCTTACGATTTATAATA
1 TTTTATAATTTTCTTACGATTTATAATA
* * *
71336752 TTTTATAATTTT-TTCCTATATTTCTACATA
1 TTTTATAATTTTCTTAC--GATTTATA-ATA
* *
71336782 TTTTATAA-TTTCTTATGATTTTTATAAAA
1 TTTTATAATTTTCTTACGA--TTTATAATA
71336811 TTTTA-AATT
1 TTTTATAATT
71336820 ATTTTATAAT
Statistics
Matches: 53, Mismatches: 8, Indels: 13
0.72 0.11 0.18
Matches are distributed among these distances:
27 3 0.06
28 15 0.28
29 17 0.32
30 18 0.34
ACGTcount: A:0.31, C:0.07, G:0.02, T:0.59
Consensus pattern (28 bp):
TTTTATAATTTTCTTACGATTTATAATA
Found at i:71336758 original size:10 final size:10
Alignment explanation
Indices: 71336743--71336847 Score: 62
Period size: 10 Copynumber: 10.7 Consensus size: 10
71336733 TTTCTTACGA
71336743 TTTATAATAT
1 TTTATAATAT
*
71336753 TTTATAATTT
1 TTTATAATAT
*
71336763 TTTCCT-ATAT
1 TTT-ATAATAT
*
71336773 TTCTA-CATAT
1 TT-TATAATAT
71336783 TTTATAAT-T
1 TTTATAATAT
*
71336792 TCTTATGAT-T
1 T-TTATAATAT
*
71336802 TTTATAAAAT
1 TTTATAATAT
71336812 TTTA-AATTAT
1 TTTATAA-TAT
71336822 TTTATAAT-T
1 TTTATAATAT
*
71336831 TCTTATGAT-T
1 T-TTATAATAT
71336841 TTTATAA
1 TTTATAA
71336848 CTTTTATTGA
Statistics
Matches: 75, Mismatches: 11, Indels: 19
0.71 0.10 0.18
Matches are distributed among these distances:
9 18 0.24
10 53 0.71
11 4 0.05
ACGTcount: A:0.32, C:0.06, G:0.02, T:0.60
Consensus pattern (10 bp):
TTTATAATAT
Found at i:71336766 original size:30 final size:30
Alignment explanation
Indices: 71336718--71336792 Score: 84
Period size: 30 Copynumber: 2.6 Consensus size: 30
71336708 TATATTTCTT
* *
71336718 TACATTTTTTATAA--TTTTCTTACGATTTA
1 TACATATTTTATAATTTTTTCCTA-GATTTA
* *
71336747 TA-ATATTTTATAATTTTTTCCTATATTTC
1 TACATATTTTATAATTTTTTCCTAGATTTA
71336776 TACATATTTTATAATTT
1 TACATATTTTATAATTT
71336793 CTTATGATTT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
28 10 0.26
29 8 0.21
30 21 0.54
ACGTcount: A:0.29, C:0.09, G:0.01, T:0.60
Consensus pattern (30 bp):
TACATATTTTATAATTTTTTCCTAGATTTA
Found at i:71336806 original size:19 final size:18
Alignment explanation
Indices: 71336782--71336864 Score: 78
Period size: 19 Copynumber: 4.3 Consensus size: 18
71336772 TTTCTACATA
71336782 TTTTATAATTTCTTATGAT
1 TTTTATAATTT-TTATGAT
* *
71336801 TTTTATAAAATTTTA-AATT
1 TTTTAT-AATTTTTATGA-T
71336820 ATTTTATAATTTCTTATGAT
1 -TTTTATAATTT-TTATGAT
*
71336840 TTTTATAACTTTTATTGAT
1 TTTTATAATTTTTA-TGAT
71336859 TTTTAT
1 TTTTAT
71336865 TTTTTATCAT
Statistics
Matches: 53, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
18 4 0.08
19 34 0.64
20 14 0.26
21 1 0.02
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.63
Consensus pattern (18 bp):
TTTTATAATTTTTATGAT
Found at i:71336846 original size:58 final size:58
Alignment explanation
Indices: 71336708--71336864 Score: 146
Period size: 58 Copynumber: 2.7 Consensus size: 58
71336698 TTACGAATTT
* * *
71336708 TATATTTCTTTACATTTTTTATAATTTTCTTACGA--TTTATAATATTTTATAATTTTTTCC
1 TATATTTC--TACA-TTTTTATAA-TTTCTTATGATTTTTATAAAATTTTATAATTTTTTCA
71336768 TATATTTCTACATATTTTATAATTTCTTATGATTTTTATAAAATTTTA-AATTATTTT-A
1 TATATTTCTACAT-TTTTATAATTTCTTATGATTTTTATAAAATTTTATAATT-TTTTCA
* *
71336826 TA-ATTTCTTATGATTTTTATAACTT-TTATTGATTTTTAT
1 TATATTTC-TA-CATTTTTATAATTTCTTA-TGATTTTTAT
71336865 TTTTTATCAT
Statistics
Matches: 85, Mismatches: 5, Indels: 16
0.80 0.05 0.15
Matches are distributed among these distances:
57 18 0.21
58 40 0.47
59 19 0.22
60 8 0.09
ACGTcount: A:0.29, C:0.07, G:0.03, T:0.61
Consensus pattern (58 bp):
TATATTTCTACATTTTTATAATTTCTTATGATTTTTATAAAATTTTATAATTTTTTCA
Found at i:71336852 original size:10 final size:9
Alignment explanation
Indices: 71336782--71336864 Score: 60
Period size: 10 Copynumber: 8.7 Consensus size: 9
71336772 TTTCTACATA
71336782 TTTTATAAT
1 TTTTATAAT
*
71336791 TTCTTATGAT
1 TT-TTATAAT
*
71336801 TTTTATAAAA
1 TTTTAT-AAT
71336811 TTTTA-AATT
1 TTTTATAA-T
71336820 ATTTTATAAT
1 -TTTTATAAT
*
71336830 TTCTTATGAT
1 TT-TTATAAT
*
71336840 TTTTATAAC
1 TTTTATAAT
*
71336849 TTTTATTGAT
1 TTTTA-TAAT
71336859 TTTTAT
1 TTTTAT
71336865 TTTTTATCAT
Statistics
Matches: 58, Mismatches: 9, Indels: 14
0.72 0.11 0.17
Matches are distributed among these distances:
8 2 0.03
9 19 0.33
10 35 0.60
11 2 0.03
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.63
Consensus pattern (9 bp):
TTTTATAAT
Found at i:71346619 original size:79 final size:79
Alignment explanation
Indices: 71346488--71346649 Score: 306
Period size: 79 Copynumber: 2.1 Consensus size: 79
71346478 GGAACATTCT
*
71346488 TGATAAATTTCAACAAGAACTGGTAACAAAGCTAAATGTTTTAACCTGCTTACTACTTCTTTTAT
1 TGATAAATTTCAACAAGAACTGGAAACAAAGCTAAATGTTTTAACCTGCTTACTACTTCTTTTAT
71346553 TAGTTTTTGATTAA
66 TAGTTTTTGATTAA
*
71346567 TGATAAATTTCAACAAGAATTGGAAACAAAGCTAAATGTTTTAACCTGCTTACTACTTCTTTTAT
1 TGATAAATTTCAACAAGAACTGGAAACAAAGCTAAATGTTTTAACCTGCTTACTACTTCTTTTAT
71346632 TAGTTTTTGATTAA
66 TAGTTTTTGATTAA
71346646 TGAT
1 TGAT
71346650 TAATGAATGA
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
79 81 1.00
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.41
Consensus pattern (79 bp):
TGATAAATTTCAACAAGAACTGGAAACAAAGCTAAATGTTTTAACCTGCTTACTACTTCTTTTAT
TAGTTTTTGATTAA
Found at i:71351599 original size:21 final size:22
Alignment explanation
Indices: 71351553--71351600 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 22
71351543 TGTTCGTCTC
71351553 CTTTCTCCTTTTCTTTCCCTTT
1 CTTTCTCCTTTTCTTTCCCTTT
* * *
71351575 -TTTC-CCTTTTTTTTTCTTTT
1 CTTTCTCCTTTTCTTTCCCTTT
71351595 CTTTCT
1 CTTTCT
71351601 TTCCTTTCTA
Statistics
Matches: 21, Mismatches: 3, Indels: 4
0.75 0.11 0.14
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (22 bp):
CTTTCTCCTTTTCTTTCCCTTT
Found at i:71353351 original size:43 final size:43
Alignment explanation
Indices: 71353286--71353371 Score: 102
Period size: 43 Copynumber: 2.0 Consensus size: 43
71353276 TCATATTTCG
71353286 TTTCTCATATCATAATCATTTCTCATATTCT-CCATTTCAATAT
1 TTTCTCATATCATAATCATTTCTCATATT-TGCCATTTCAATAT
* * ** * *
71353329 TTTCTCATCTCATATTTGTTTCTCATCTTTGCCATTTTAATAT
1 TTTCTCATATCATAATCATTTCTCATATTTGCCATTTCAATAT
71353372 CAATCTTATA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
42 1 0.03
43 35 0.97
ACGTcount: A:0.23, C:0.22, G:0.02, T:0.52
Consensus pattern (43 bp):
TTTCTCATATCATAATCATTTCTCATATTTGCCATTTCAATAT
Found at i:71354083 original size:19 final size:18
Alignment explanation
Indices: 71354041--71354083 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
71354031 TTAATATTAC
*
71354041 ATATTTCAACTTCACATT
1 ATATTTCAACTTCACACT
* *
71354059 AAATTTCAATTTTCACACT
1 ATATTTCAA-CTTCACACT
71354078 ATATTT
1 ATATTT
71354084 TGCTTATTCT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.35, C:0.19, G:0.00, T:0.47
Consensus pattern (18 bp):
ATATTTCAACTTCACACT
Found at i:71354486 original size:5 final size:5
Alignment explanation
Indices: 71354472--71354510 Score: 60
Period size: 5 Copynumber: 7.8 Consensus size: 5
71354462 GCTTCTTCTC
* *
71354472 CTTTT CTTTT TTTTT CTTTT CTTTT GTTTT CTTTT CTTT
1 CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT CTTT
71354511 GTTTAATTTG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.00, C:0.15, G:0.03, T:0.82
Consensus pattern (5 bp):
CTTTT
Found at i:71354492 original size:15 final size:15
Alignment explanation
Indices: 71354472--71354514 Score: 70
Period size: 15 Copynumber: 2.9 Consensus size: 15
71354462 GCTTCTTCTC
*
71354472 CTTTTCTTTTTTTTT
1 CTTTTCTTTTGTTTT
71354487 CTTTTCTTTTGTTTT
1 CTTTTCTTTTGTTTT
71354502 CTTTTC-TTTGTTT
1 CTTTTCTTTTGTTT
71354515 AATTTGCATG
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
14 7 0.26
15 20 0.74
ACGTcount: A:0.00, C:0.14, G:0.05, T:0.81
Consensus pattern (15 bp):
CTTTTCTTTTGTTTT
Found at i:71367942 original size:19 final size:18
Alignment explanation
Indices: 71367918--71367958 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
71367908 AGACAAGGTA
71367918 AAAAGAAGAAAAAAAAGAG
1 AAAAGAAGAAAAAAAAG-G
* *
71367937 AAAAGAATAATAAAAAGG
1 AAAAGAAGAAAAAAAAGG
71367955 AAAA
1 AAAA
71367959 TTATGTCAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.78, C:0.00, G:0.17, T:0.05
Consensus pattern (18 bp):
AAAAGAAGAAAAAAAAGG
Found at i:71368275 original size:72 final size:70
Alignment explanation
Indices: 71368179--71368335 Score: 183
Period size: 71 Copynumber: 2.2 Consensus size: 70
71368169 TAAAAGAAAT
* *
71368179 ATTTAATGAGTATTTTAAAATTGGTGACAAATTTTTAAGAGAAATATTTAAA-TAAAAAAATATT
1 ATTTAATGAGAATTTTAAAATTGGTGA-AAATTTTTAA-A-AAATATTTAAAGGAAAAAAATATT
*
71368243 TAATG-GG
63 TAATGAGA
* * * *
71368250 ATTTAAATGAGAATTTTGAAGTTGGTGATAATTTTTAAAAAATATTTAAAGGAAACAAATATTTA
1 ATTT-AATGAGAATTTTAAAATTGGTGAAAATTTTTAAAAAATATTTAAAGGAAAAAAATATTTA
71368315 ATGAGA
65 ATGAGA
*
71368321 ATTTTAATAAGAATT
1 A-TTTAATGAGAATT
71368336 AAATGGAAAA
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
69 11 0.15
70 16 0.22
71 24 0.32
72 23 0.31
ACGTcount: A:0.46, C:0.01, G:0.14, T:0.38
Consensus pattern (70 bp):
ATTTAATGAGAATTTTAAAATTGGTGAAAATTTTTAAAAAATATTTAAAGGAAAAAAATATTTAA
TGAGA
Found at i:71369073 original size:16 final size:15
Alignment explanation
Indices: 71369033--71369083 Score: 66
Period size: 16 Copynumber: 3.3 Consensus size: 15
71369023 GGTCCTTTTG
71369033 GATTCAGATTTTTCA
1 GATTCAGATTTTTCA
* *
71369048 TATTCGGATTTTCTCA
1 GATTCAGATTTT-TCA
71369064 GATTCAGATTGTTTCA
1 GATTCAGATT-TTTCA
71369080 GATT
1 GATT
71369084 GGGTGAGCTT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
15 10 0.33
16 18 0.60
17 2 0.07
ACGTcount: A:0.24, C:0.14, G:0.16, T:0.47
Consensus pattern (15 bp):
GATTCAGATTTTTCA
Found at i:71370164 original size:55 final size:55
Alignment explanation
Indices: 71370075--71370181 Score: 171
Period size: 55 Copynumber: 1.9 Consensus size: 55
71370065 TCATGCCTAC
* *
71370075 TCAAGAGGGGAATGTAGGCAAAACGAAACGAAATGGATGTTTTTGTAGAGATGTG
1 TCAAGAGGGGAATGTAGGCAAAACGAAACAAAATGGATGCTTTTGTAGAGATGTG
*
71370130 TCAAGAGGAGG-ATGTAGGCAAAATGAAACAAAATGGATGCTTTTGTAGAGAT
1 TCAAGAGG-GGAATGTAGGCAAAACGAAACAAAATGGATGCTTTTGTAGAGAT
71370182 ATGTGAGCAT
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
55 46 0.96
56 2 0.04
ACGTcount: A:0.38, C:0.07, G:0.31, T:0.23
Consensus pattern (55 bp):
TCAAGAGGGGAATGTAGGCAAAACGAAACAAAATGGATGCTTTTGTAGAGATGTG
Found at i:71372334 original size:16 final size:16
Alignment explanation
Indices: 71372301--71372334 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
71372291 GAATGTTGTG
*
71372301 ATGGTGAAGAAAGCTA
1 ATGGTGAAGAAAGATA
*
71372317 ATGGTGAAGAAGGATA
1 ATGGTGAAGAAAGATA
71372333 AT
1 AT
71372335 TTTCTTTTAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.03, G:0.32, T:0.21
Consensus pattern (16 bp):
ATGGTGAAGAAAGATA
Found at i:71377196 original size:131 final size:131
Alignment explanation
Indices: 71376960--71377295 Score: 359
Period size: 131 Copynumber: 2.6 Consensus size: 131
71376950 CCCAGCTGAT
* * * * * *
71376960 TCAAGATCATGAACAATTTTATTCGAGTTAGCTAATTTAACATTGCTACTTCGAACAACTTGCTG
1 TCAAGATCATGAAAAATTTTATTTGAGTTAGTTGATTTAAGATCGCTACTTCGAACAACTTGCTG
* * ** * *** *
71377025 ATTTAAGATCGTAGCTAATATTATTATGGTTTGCTGATTCAAGATCGTAACCCAAGTTCATTCGA
66 ATTTAAGATCGTAGATAATATTACTAAAGTTCGAACATTCAAGATCGCAACCCAAGTTCATTCGA
71377090 C
131 C
* * * *
71377091 TCAAGATCATGAAAAATTTTATTTAAGTTAGTTGATTTAAGATCGCTACTTTGAATATCTTGCTG
1 TCAAGATCATGAAAAATTTTATTTGAGTTAGTTGATTTAAGATCGCTACTTCGAACAACTTGCTG
* * * * * *
71377156 ATTTAATATCGTAGATGATATTACTAAAGTTCGAACATTCAGGATTGCAACCTAAGTTCATTTGA
66 ATTTAAGATCGTAGATAATATTACTAAAGTTCGAACATTCAAGATCGCAACCCAAGTTCATTCGA
*
71377221 T
131 C
* * * * * * *
71377222 TCAAAATTAT-AAACAATTTTATTTGAGTTAGTTGGTTTAAGATCACTTCTCCAAACAACTTGCT
1 TCAAGATCATGAAA-AATTTTATTTGAGTTAGTTGATTTAAGATCGCTACTTCGAACAACTTGCT
71377286 GATTTAAGAT
65 GATTTAAGAT
71377296 TGCAACTGAT
Statistics
Matches: 166, Mismatches: 38, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
130 3 0.02
131 163 0.98
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.38
Consensus pattern (131 bp):
TCAAGATCATGAAAAATTTTATTTGAGTTAGTTGATTTAAGATCGCTACTTCGAACAACTTGCTG
ATTTAAGATCGTAGATAATATTACTAAAGTTCGAACATTCAAGATCGCAACCCAAGTTCATTCGA
C
Found at i:71384883 original size:17 final size:18
Alignment explanation
Indices: 71384863--71384904 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
71384853 TGAGGTAAAA
71384863 TCTTCTATCATTTTC-TT
1 TCTTCTATCATTTTCATT
* *
71384880 TCTTTTATCTTTTTCATT
1 TCTTCTATCATTTTCATT
71384898 TCCTTCT
1 T-CTTCT
71384905 TTATCAAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 13 0.65
18 3 0.15
19 4 0.20
ACGTcount: A:0.10, C:0.24, G:0.00, T:0.67
Consensus pattern (18 bp):
TCTTCTATCATTTTCATT
Found at i:71387717 original size:71 final size:70
Alignment explanation
Indices: 71387522--71387717 Score: 198
Period size: 71 Copynumber: 2.8 Consensus size: 70
71387512 GAAACCTATG
* * * * * * *
71387522 AGCCTTAAGCTATTCAACTGGGAGCGTAGGCTCGCGATAACTATTTTCA-AGGCTACGGTATTGA
1 AGCCTTAAGATATTTAGCT-GGAGCGTAGGCTCGCGCTAACTATTTT-AGAGGCCAAGGTATTAA
71387586 ACCTGCA
64 ACCTGCA
* * * * *
71387593 AGCCTTAAAATATTTAGGTGGAAGCGTAGGTTTGCACTAACTATTTT-GAAGGCCAAGGTATTAA
1 AGCCTTAAGATATTTAGCTGG-AGCGTAGGCTCGCGCTAACTATTTTAG-AGGCCAAGGTATTAA
* *
71387657 ATCTGCT
64 ACCTGCA
*
71387664 AGCCTTAAGATATTTAGCTAGGAGCGTAGGCTCGTGCTAACTATTTTAGAGGCC
1 AGCCTTAAGATATTTAGCT-GGAGCGTAGGCTCGCGCTAACTATTTTAGAGGCC
71387718 GTGATATTGA
Statistics
Matches: 100, Mismatches: 20, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
70 2 0.02
71 95 0.95
72 3 0.03
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (70 bp):
AGCCTTAAGATATTTAGCTGGAGCGTAGGCTCGCGCTAACTATTTTAGAGGCCAAGGTATTAAAC
CTGCA
Found at i:71387739 original size:71 final size:68
Alignment explanation
Indices: 71387514--71387744 Score: 180
Period size: 71 Copynumber: 3.3 Consensus size: 68
71387504 TTGTGTATGA
* * * *
71387514 AACCTATGAGCCTTAAGCTATTCAACTGGGAGCGTAGGCTCGCGATAACTATTTTCA-AGGCTAC
1 AACCTATGAGCCTTAAGATATTTAGCT-GGAGCGTAGGCTCGCGCTAACTATTTT-AGAGGC--C
71387578 GGTATTG
62 GGTATTG
*** * * * * *
71387585 AACCTGCAAGCCTTAAAATATTTAGGTGGAAGCGTAGGTTTGCACTAACTATTTT-GAAGGCCAA
1 AACCTATGAGCCTTAAGATATTTAGCTGG-AGCGTAGGCTCGCGCTAACTATTTTAG-AGGCC--
*
71387649 GGTATTA
62 GGTATTG
* * *
71387656 AATCTGCT-AGCCTTAAGATATTTAGCTAGGAGCGTAGGCTCGTGCTAACTATTTTAGAGGCCGT
1 AACCT-ATGAGCCTTAAGATATTTAGCT-GGAGCGTAGGCTCGCGCTAACTATTTTAGAGGCCG-
71387720 GATATTG
63 G-TATTG
*
71387727 AACCTTTGAGCCTTAAGA
1 AACCTATGAGCCTTAAGA
71387745 GATTCCCAAG
Statistics
Matches: 124, Mismatches: 25, Indels: 22
0.73 0.15 0.13
Matches are distributed among these distances:
69 2 0.02
70 4 0.03
71 115 0.93
72 3 0.02
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (68 bp):
AACCTATGAGCCTTAAGATATTTAGCTGGAGCGTAGGCTCGCGCTAACTATTTTAGAGGCCGGTA
TTG
Found at i:71393653 original size:15 final size:15
Alignment explanation
Indices: 71393633--71393665 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
71393623 TGGGCCTGGA
*
71393633 TGTACGGGAGGAACT
1 TGTACGAGAGGAACT
71393648 TGTACGAGAGGAACT
1 TGTACGAGAGGAACT
71393663 TGT
1 TGT
71393666 GTGCTCGCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.27, C:0.12, G:0.36, T:0.24
Consensus pattern (15 bp):
TGTACGAGAGGAACT
Found at i:71397208 original size:16 final size:16
Alignment explanation
Indices: 71397172--71397203 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
71397162 AATATTTTTG
71397172 ATAAATGTTATATATT
1 ATAAATGTTATATATT
71397188 ATAAAT-TT-TATATT
1 ATAAATGTTATATATT
71397202 AT
1 AT
71397204 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 2 0.12
16 6 0.38
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (16 bp):
ATAAATGTTATATATT
Found at i:71401675 original size:20 final size:20
Alignment explanation
Indices: 71401650--71401690 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
71401640 AACTTATTTC
71401650 ATTAAAAATAAAAGAAATAA
1 ATTAAAAATAAAAGAAATAA
*
71401670 ATTAAAAATAAAGGAAATAA
1 ATTAAAAATAAAAGAAATAA
71401690 A
1 A
71401691 AGGAAAACAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.73, C:0.00, G:0.07, T:0.20
Consensus pattern (20 bp):
ATTAAAAATAAAAGAAATAA
Found at i:71401697 original size:20 final size:20
Alignment explanation
Indices: 71401653--71401697 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
71401643 TTATTTCATT
**
71401653 AAAAATAAAAGAAATAAATT
1 AAAAATAAAAGAAATAAAAG
*
71401673 AAAAATAAAGGAAATAAAAGG
1 AAAAATAAAAGAAATAAAA-G
71401694 AAAA
1 AAAA
71401698 CAGAATCAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.76, C:0.00, G:0.11, T:0.13
Consensus pattern (20 bp):
AAAAATAAAAGAAATAAAAG
Found at i:71403351 original size:3 final size:3
Alignment explanation
Indices: 71403343--71403380 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
71403333 AGTAAAACTT
71403343 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
71403381 TGATATACAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:71407752 original size:33 final size:33
Alignment explanation
Indices: 71407710--71407785 Score: 125
Period size: 33 Copynumber: 2.3 Consensus size: 33
71407700 TACCCTCTGT
71407710 TTGGTGTGTTGGTTAGATTAGCTCTTATGAGCA
1 TTGGTGTGTTGGTTAGATTAGCTCTTATGAGCA
* **
71407743 TTGGTGTGTTGGTTGGATTAGCTCTTATGAGGG
1 TTGGTGTGTTGGTTAGATTAGCTCTTATGAGCA
71407776 TTGGTGTGTT
1 TTGGTGTGTT
71407786 AAAGGGATTT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 40 1.00
ACGTcount: A:0.13, C:0.07, G:0.36, T:0.45
Consensus pattern (33 bp):
TTGGTGTGTTGGTTAGATTAGCTCTTATGAGCA
Found at i:71407794 original size:33 final size:33
Alignment explanation
Indices: 71407725--71407794 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 33
71407715 GTGTTGGTTA
****
71407725 GATTAGCTCTTATGAGCATTGGTGTGTTGGTTG
1 GATTAGCTCTTATGAGCATTGGTGTGTTAAAGG
**
71407758 GATTAGCTCTTATGAGGGTTGGTGTGTTAAAGG
1 GATTAGCTCTTATGAGCATTGGTGTGTTAAAGG
71407791 GATT
1 GATT
71407795 TTCTCGTGTG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.19, C:0.07, G:0.34, T:0.40
Consensus pattern (33 bp):
GATTAGCTCTTATGAGCATTGGTGTGTTAAAGG
Found at i:71422552 original size:55 final size:53
Alignment explanation
Indices: 71422362--71422616 Score: 229
Period size: 55 Copynumber: 4.8 Consensus size: 53
71422352 ACGCGGGTAC
* * * * *
71422362 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA
* *
71422411 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAA
* * *
71422464 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTCTGCCTTATAGTAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCT-TGCCTTAT-G-AA
* ***
71422519 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GATA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGA-A
* * *
71422572 TCTTACCAATTTCCATGCCTTGGA-ATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGTCTT-GACATGGTCTTACATGGGATCCTT
71422617 AAACCCTAAT
Statistics
Matches: 173, Mismatches: 20, Indels: 20
0.81 0.09 0.09
Matches are distributed among these distances:
49 38 0.22
50 1 0.01
52 4 0.02
53 47 0.27
54 10 0.06
55 68 0.39
56 5 0.03
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.37
Consensus pattern (53 bp):
CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAA
Found at i:71422553 original size:108 final size:110
Alignment explanation
Indices: 71422409--71422609 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
71422399 ATCCTTTTGA
* *
71422409 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGA-A-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GATATCTCACCAA
*
71422472 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTCTGCCTTATAGT
65 TTGCCATGCCTTGGAATGGTCTTACATGGGACCTCTGCCTTATAGT
* * *
71422517 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGATATCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGATATCTCACCAAT
*
71422582 TTCCATGCCTTGGAATGGTCTTACATGG
66 TGCCATGCCTTGGAATGGTCTTACATGG
71422610 TATCCTTAAA
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 2 0.02
108 48 0.58
109 7 0.08
110 26 0.31
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGATATCTCACCAAT
TGCCATGCCTTGGAATGGTCTTACATGGGACCTCTGCCTTATAGT
Found at i:71423697 original size:19 final size:19
Alignment explanation
Indices: 71423670--71423706 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
71423660 ACCCAAGCCC
*
71423670 AATAGCTAAACATAGACCT
1 AATAACTAAACATAGACCT
*
71423689 AATAACTAAACCTAGACC
1 AATAACTAAACATAGACC
71423707 CAAATTTACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.49, C:0.24, G:0.08, T:0.19
Consensus pattern (19 bp):
AATAACTAAACATAGACCT
Found at i:71426344 original size:131 final size:130
Alignment explanation
Indices: 71426102--71426695 Score: 552
Period size: 131 Copynumber: 4.5 Consensus size: 130
71426092 TTCGCAATTA
* * * * *
71426102 TTTAAAACGAAGGCGATATTCGGTATTTGACAATTCGTGGAATCGTGCCCTAACGTGTTGGGTTG
1 TTTAAAACGAAGGCAATATTCGGTGTTTGGCAATTCG-GGAATCGTGCCCTATCGTGCTGGGTTG
* ** * * *
71426167 CAATTTCTCGTTT-TCTCAAAGTAATCAAAGGTCCCTTCAAAATTTCACTCATGTCTTCTAAAAA
65 CAATTTCTCATTTGT-TCAAAACAATCGAAGATCCCTTCAGAATTTCACTCATGT-TTCTAAAAA
71426231 -TCC
128 CT-C
* * *
71426234 TTTAAAACGAAGGCAATACTT-GGTGTTTGACAATTCGAGAATCATGCCCTATCGTGCTGGGTTG
1 TTTAAAACGAAGGCAATA-TTCGGTGTTTGGCAATTCGGGAATCGTGCCCTATCGTGCTGGGTTG
** * * * * ** * *
71426298 TGATTTCTCGTTTGTTCAAAACAATCGAATATTCCTTTAGGTTTTCACTTATGTTTATTAAAAAC
65 CAATTTCTCATTTGTTCAAAACAATCGAAGATCCCTTCAGAATTTCACTCATGTTT-CTAAAAAC
71426363 -C
129 TC
* * * * *
71426364 TTTCAAAACGAAGGCGATGTTCGATGTTTGGCAATCCGCGGAATCGTGGCCTATCGTGCTGGGTT
1 TTT-AAAACGAAGGCAATATTCGGTGTTTGGCAATTCG-GGAATCGTGCCCTATCGTGCTGGGTT
* * * *
71426429 GCAATTTCTCATTTGCTCAAAATAATCGAACG-TCCCTTTAGAATTTCACTCATGGTTCCTAAAA
64 GCAATTTCTCATTTGTTCAAAACAATCGAA-GATCCCTTCAGAATTTCACTCAT-GTTTCTAAAA
71426493 ACTC
127 ACTC
* * * * * * * *
71426497 TTTGAAATGAAGGAAATATTCGATGTTTGGCGATTTGAGAATCGTGCCCTATCGTGCTGGGTTAC
1 TTTAAAACGAAGGCAATATTCGGTGTTTGGCAATTCGGGAATCGTGCCCTATCGTGCTGGGTTGC
** * * **
71426562 GCTTTTTCATTTGTTCAAAACAATCGAAGATTCCTTCAGAATTTCACTCGCGTTTTCTAAAAACT
66 AATTTCTCATTTGTTCAAAACAATCGAAGATCCCTTCAGAATTTCACTCATG-TTTCTAAAAACT
71426627 C
130 C
** * * * * *
71426628 TTTAAAATAAAGG-AATGTTAGGTGTTTGGCAATTCGGGGAGTAGCGCCCTATCGTGCTGGGTTG
1 TTTAAAACGAAGGCAATATTCGGTGTTTGGCAATTC-GGGAATCGTGCCCTATCGTGCTGGGTTG
71426692 CAAT
65 CAAT
71426696 CTCCCGTTGG
Statistics
Matches: 374, Mismatches: 75, Indels: 27
0.79 0.16 0.06
Matches are distributed among these distances:
130 27 0.07
131 207 0.55
132 131 0.35
133 9 0.02
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (130 bp):
TTTAAAACGAAGGCAATATTCGGTGTTTGGCAATTCGGGAATCGTGCCCTATCGTGCTGGGTTGC
AATTTCTCATTTGTTCAAAACAATCGAAGATCCCTTCAGAATTTCACTCATGTTTCTAAAAACTC
Found at i:71426577 original size:263 final size:263
Alignment explanation
Indices: 71426102--71426695 Score: 696
Period size: 263 Copynumber: 2.3 Consensus size: 263
71426092 TTCGCAATTA
* * * * * *
71426102 TTTAAAACGAAGGCGATATTCGGTATTTGACAATTCGTGGAATCGTGCCCTAACGTGTTGGGTTG
1 TTTAAAACGAAGGCGATGTTCGGTGTTTGGCAATTCGCGGAATCGTGCCCTATCGTGCTGGGTTG
* * * * *
71426167 CAATTTCTCGTTTTCTCAAAGTAATCAAAGGTCCCTTCAAAATTTCACTCATGTCTTCTAAAAAT
66 CAATTTCTCATTTGCTCAAAATAATCAAACGTCCCTTCAAAATTTCACTCATGTCTCCTAAAAAT
* *
71426232 CCTTTAAAACGAAGGCAATACTTGGTGTTTGACAATTCGAGAATCATGCCCTATCGTGCTGGGTT
131 CCTTTAAAACGAAGGAAATACTTGATGTTTGACAATTCGAGAATCATGCCCTATCGTGCTGGGTT
** * * * ** * *
71426297 GTGATTTCTCGTTTGTTCAAAACAATCGAATATTCCTTTAGGTTTTCACTTATGTTTAT-TAAAA
196 ACGATTTCTCATTTGTTCAAAACAATCGAAGATTCCTTCAGAATTTCACTCACGTTT-TCTAAAA
71426361 AC-C
260 ACTC
* * *
71426364 TTTCAAAACGAAGGCGATGTTCGATGTTTGGCAATCCGCGGAATCGTGGCCTATCGTGCTGGGTT
1 TTT-AAAACGAAGGCGATGTTCGGTGTTTGGCAATTCGCGGAATCGTGCCCTATCGTGCTGGGTT
* * *
71426429 GCAATTTCTCATTTGCTCAAAATAATCGAACGTCCCTTTAGAATTTCACTCATGGT-TCCTAAAA
65 GCAATTTCTCATTTGCTCAAAATAATCAAACGTCCCTTCAAAATTTCACTCAT-GTCTCCTAAAA
* * * * * *
71426493 A-CTCTTTGAAATGAAGGAAATA-TTCGATGTTTGGCGATTTGAGAATCGTGCCCTATCGTGCTG
129 ATC-CTTTAAAACGAAGGAAATACTT-GATGTTTGACAATTCGAGAATCATGCCCTATCGTGCTG
* * *
71426556 GGTTACGCTTTTTCATTTGTTCAAAACAATCGAAGATTCCTTCAGAATTTCACTCGCGTTTTCTA
192 GGTTACGATTTCTCATTTGTTCAAAACAATCGAAGATTCCTTCAGAATTTCACTCACGTTTTCTA
71426621 AAAACTC
257 AAAACTC
** * * * * * *
71426628 TTTAAAATAAAGG-AATGTTAGGTGTTTGGCAATTCGGGGAGTAGCGCCCTATCGTGCTGGGTTG
1 TTTAAAACGAAGGCGATGTTCGGTGTTTGGCAATTCGCGGAATCGTGCCCTATCGTGCTGGGTTG
71426692 CAAT
66 CAAT
71426696 CTCCCGTTGG
Statistics
Matches: 278, Mismatches: 48, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
262 53 0.19
263 219 0.79
264 6 0.02
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (263 bp):
TTTAAAACGAAGGCGATGTTCGGTGTTTGGCAATTCGCGGAATCGTGCCCTATCGTGCTGGGTTG
CAATTTCTCATTTGCTCAAAATAATCAAACGTCCCTTCAAAATTTCACTCATGTCTCCTAAAAAT
CCTTTAAAACGAAGGAAATACTTGATGTTTGACAATTCGAGAATCATGCCCTATCGTGCTGGGTT
ACGATTTCTCATTTGTTCAAAACAATCGAAGATTCCTTCAGAATTTCACTCACGTTTTCTAAAAA
CTC
Found at i:71438321 original size:132 final size:131
Alignment explanation
Indices: 71438084--71438626 Score: 755
Period size: 132 Copynumber: 4.1 Consensus size: 131
71438074 CGATGAAACC
* * ** * *
71438084 GAAATTGTAGATCTCGTTTCGCCGAAGTTGCAGTGGAGTGGATTGAAAACGACGAATCTTGGCTT
1 GAAATTGTAGATCTTGTTTC-CTGAAGTTGCAGTGGAGCAGATCGAAGACGACGAATCTTGGCTT
* *
71438149 CCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAATGAAGTAGG
65 CCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGG
71438214 CT
130 CT
* * * **
71438216 GAAATTATAGATCATGTTTCTCTGAAGTTGCAGTGGAGCAGATCGAAGATGGTGAATCTTGGCTT
1 GAAATTGTAGATCTTGTTTC-CTGAAGTTGCAGTGGAGCAGATCGAAGACGACGAATCTTGGCTT
*
71438281 CCTGAAGTTGCAATGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGG
65 CCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGG
*
71438346 TT
130 CT
* *
71438348 GAAATTGTAGATCTTGTTTCCCTGAAGTCGTAGTGGAGC-GAATCGAAGACGACGAATCTTGGCT
1 GAAATTGTAGATCTTGTTT-CCTGAAGTTGCAGTGGAGCAG-ATCGAAGACGACGAATCTTGGCT
*
71438412 TCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAG
64 TCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAG
71438477 GCT
129 GCT
* * ** * *
71438480 AAAATTGCAGATCTTGTTTCCATGAAGTTGCAGTGGAGCAGATCGAAGACGGTGAATCTAGTCTT
1 GAAATTGTAGATCTTGTTTCC-TGAAGTTGCAGTGGAGCAGATCGAAGACGACGAATCTTGGCTT
* * * * *
71438545 CTTGAAGTTACAGTGAAGCAGATTTAAGCCACCACCCTAGCTCCCTAAAGTTGGAGTGGAGTGGG
65 CCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGG
71438610 CT
130 CT
*
71438612 GAAGATTGCAGATCT
1 GAA-ATTGTAGATCT
71438627 CATCTCCAAT
Statistics
Matches: 366, Mismatches: 40, Indels: 9
0.88 0.10 0.02
Matches are distributed among these distances:
131 3 0.01
132 350 0.96
133 13 0.04
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.27
Consensus pattern (131 bp):
GAAATTGTAGATCTTGTTTCCTGAAGTTGCAGTGGAGCAGATCGAAGACGACGAATCTTGGCTTC
CTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGC
T
Found at i:71441659 original size:131 final size:128
Alignment explanation
Indices: 71441416--71441874 Score: 474
Period size: 131 Copynumber: 3.5 Consensus size: 128
71441406 TTCGCAATTA
** * * * *
71441416 TTTAAAACGAAGGCGATATTCGGTATTTGACAATTCGTGGAATCGTGCCCTAACGTGTTGGGTTG
1 TTTAAAACGAAGGAAATATTCGGTGTTTGACAATTCG-GGAATCATGCCCTATCGTGCTGGGTTG
* * *
71441481 CAATTTCTCGTTTGCTCAAAGTAATCGAAGGTCCTTTCA-AATTTCACTCATGTCTTCTAAAAA-
65 CGATTTCTCGTTTTCTCAAAATAATCGAA-GTCCTTT-AGAATTTCACTCATGT-TTCTAAAAAC
71441544 TCC
127 T-C
* * *
71441547 TTTAAAACGAAGGCAATACTCGGTGTTTGACAATTCGGGAATCATGCCCTATCGTGCTGGGTTGT
1 TTTAAAACGAAGGAAATATTCGGTGTTTGACAATTCGGGAATCATGCCCTATCGTGCTGGGTTGC
* *
71441612 GATTTCTCGTTTTCTCAAAATAATCGAACGTCCCTTTAGAATTTCACTAATGGTTCCTAAAAACT
66 GATTTCTCGTTTTCTCAAAATAATCGAA-GT-CCTTTAGAATTTCACTCAT-GTTTCTAAAAACT
71441677 C
128 C
* * * * * * *
71441678 TTTGAAACGAAGGAAATATTCGATGTTTGGCAATTTGAGAATCGTGCCCTATCGTGCTGGGTTAC
1 TTTAAAACGAAGGAAATATTCGGTGTTTGACAATTCGGGAATCATGCCCTATCGTGCTGGGTTGC
* * * * ** *
71441743 GCTTTTTCATTTGT-TCAAAACAATCGAAGATTCCTTCGGAATTTCACTCACGTTTTCTAAAAAC
66 GATTTCTCGTTT-TCTCAAAATAATCGAAG--TCCTTTAGAATTTCACTCATG-TTTCTAAAAAC
71441807 TC
127 TC
** * * * *
71441809 TTTAAAATAAAGGAAATGTTCGGTGTTTGGCAATTCGGGGAGTAATGCCCTATCGTGCTGGGTTG
1 TTTAAAACGAAGGAAATATTCGGTGTTTGACAATTC-GGGAATCATGCCCTATCGTGCTGGGTTG
71441874 C
65 C
71441875 AATCTCCCGT
Statistics
Matches: 276, Mismatches: 43, Indels: 17
0.82 0.13 0.05
Matches are distributed among these distances:
130 54 0.20
131 193 0.70
132 29 0.11
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (128 bp):
TTTAAAACGAAGGAAATATTCGGTGTTTGACAATTCGGGAATCATGCCCTATCGTGCTGGGTTGC
GATTTCTCGTTTTCTCAAAATAATCGAAGTCCTTTAGAATTTCACTCATGTTTCTAAAAACTC
Found at i:71448627 original size:16 final size:16
Alignment explanation
Indices: 71448608--71448638 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
71448598 CTTCTTCACT
71448608 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
71448624 TACTTACTTACTTAA
1 TACTCACTTACTTAA
71448639 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:71448644 original size:20 final size:20
Alignment explanation
Indices: 71448605--71448644 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
71448595 AAACTTCTTC
* *
71448605 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
71448625 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
71448645 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:71449021 original size:55 final size:53
Alignment explanation
Indices: 71448890--71449085 Score: 216
Period size: 55 Copynumber: 3.6 Consensus size: 53
71448880 CTTACCATTT
*
71448890 CCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATG
1 CCATGCCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAATG
* * *
71448943 CCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTTATCAATG
1 CCATGCCTTGACATGGTCTTACATGGGATCC-TTGCCTTAT-G-AACTCACCAATG
* *** * *
71448998 CCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAACCTTACCAATTT
1 CCATGCCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA-CTCACCAA-TG
* *
71449053 CCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 CCATGCCTTGACATGGTCTTACATGGGATCCTT
71449086 AAACCCTAAT
Statistics
Matches: 121, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
52 2 0.02
53 38 0.31
54 8 0.07
55 71 0.59
56 2 0.02
ACGTcount: A:0.21, C:0.26, G:0.17, T:0.35
Consensus pattern (53 bp):
CCATGCCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAATG
Found at i:71454043 original size:33 final size:33
Alignment explanation
Indices: 71454006--71454081 Score: 134
Period size: 33 Copynumber: 2.3 Consensus size: 33
71453996 TACCCTCTGT
71454006 TTGGTGTGTTGGTTAGATTAGCTCTTATGAGCA
1 TTGGTGTGTTGGTTAGATTAGCTCTTATGAGCA
* *
71454039 TTGGTGTGTTGGTTGGATTAGCTCTTATGAGCG
1 TTGGTGTGTTGGTTAGATTAGCTCTTATGAGCA
71454072 TTGGTGTGTT
1 TTGGTGTGTT
71454082 AGAGGGATTT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.13, C:0.08, G:0.34, T:0.45
Consensus pattern (33 bp):
TTGGTGTGTTGGTTAGATTAGCTCTTATGAGCA
Found at i:71454090 original size:33 final size:33
Alignment explanation
Indices: 71454021--71454090 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
71454011 GTGTTGGTTA
* **
71454021 GATTAGCTCTTATGAGCATTGGTGTGTTGGTTG
1 GATTAGCTCTTATGAGCATTGGTGTGTTAGAGG
*
71454054 GATTAGCTCTTATGAGCGTTGGTGTGTTAGAGG
1 GATTAGCTCTTATGAGCATTGGTGTGTTAGAGG
71454087 GATT
1 GATT
71454091 TTCTCGCGTG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.17, C:0.09, G:0.34, T:0.40
Consensus pattern (33 bp):
GATTAGCTCTTATGAGCATTGGTGTGTTAGAGG
Found at i:71454242 original size:29 final size:29
Alignment explanation
Indices: 71454172--71454231 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
71454162 GGAAAATCTC
71454172 AGTAAGATAATTTGTTTAATGAATTTGAA
1 AGTAAGATAATTTGTTTAATGAATTTGAA
71454201 AGTAAGATAATTTGTTTAATGAATTTGAA
1 AGTAAGATAATTTGTTTAATGAATTTGAA
71454230 AG
1 AG
71454232 ATTTGTTATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.42, C:0.00, G:0.18, T:0.40
Consensus pattern (29 bp):
AGTAAGATAATTTGTTTAATGAATTTGAA
Found at i:71454756 original size:26 final size:26
Alignment explanation
Indices: 71454719--71454824 Score: 160
Period size: 26 Copynumber: 4.1 Consensus size: 26
71454709 ATACAAATTA
*
71454719 ATAATGGGTTAGGTAAATGTTCCATG
1 ATAATGGATTAGGTAAATGTTCCATG
*
71454745 ATAATGGATTAGGTAAATATTCCATG
1 ATAATGGATTAGGTAAATGTTCCATG
*
71454771 ATAATGGGTTAGGTAAATGTTCCATG
1 ATAATGGATTAGGTAAATGTTCCATG
*
71454797 ATAAT-GATTTAGGTAAATGTTACATG
1 ATAATGGA-TTAGGTAAATGTTCCATG
71454823 AT
1 AT
71454825 GGGCATTTCA
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
25 1 0.01
26 72 0.99
ACGTcount: A:0.35, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
ATAATGGATTAGGTAAATGTTCCATG
Found at i:71454781 original size:52 final size:52
Alignment explanation
Indices: 71454719--71454824 Score: 178
Period size: 52 Copynumber: 2.0 Consensus size: 52
71454709 ATACAAATTA
*
71454719 ATAATGGGTTAGGTAAATGTTCCATGATAATGGA-TTAGGTAAATATTCCATG
1 ATAATGGGTTAGGTAAATGTTCCATGATAAT-GATTTAGGTAAATATTACATG
*
71454771 ATAATGGGTTAGGTAAATGTTCCATGATAATGATTTAGGTAAATGTTACATG
1 ATAATGGGTTAGGTAAATGTTCCATGATAATGATTTAGGTAAATATTACATG
71454823 AT
1 AT
71454825 GGGCATTTCA
Statistics
Matches: 51, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
51 2 0.04
52 49 0.96
ACGTcount: A:0.35, C:0.07, G:0.23, T:0.36
Consensus pattern (52 bp):
ATAATGGGTTAGGTAAATGTTCCATGATAATGATTTAGGTAAATATTACATG
Found at i:71463148 original size:46 final size:46
Alignment explanation
Indices: 71463094--71463225 Score: 158
Period size: 46 Copynumber: 2.8 Consensus size: 46
71463084 GATATTTGGG
*
71463094 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA-A
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGA-ACGAGA
* *** * * *
71463140 TATCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGAACGAGA
*
71463187 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
71463226 GCGGGTTCCA
Statistics
Matches: 70, Mismatches: 14, Indels: 4
0.80 0.16 0.05
Matches are distributed among these distances:
46 36 0.51
47 34 0.49
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAACGAGA
Found at i:71466191 original size:15 final size:15
Alignment explanation
Indices: 71466171--71466239 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
71466161 GTATCTTGGG
71466171 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
71466186 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
71466201 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
71466216 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
71466231 TTTCTTTAT
1 TTTCTTTAT
71466240 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:71466240 original size:30 final size:30
Alignment explanation
Indices: 71466162--71466249 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
71466152 CATAATATCG
* * * *
71466162 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
71466192 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
71466222 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
71466250 TATTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:71472586 original size:2 final size:2
Alignment explanation
Indices: 71472575--71472609 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
71472565 TATATAATTA
* *
71472575 AT AT AA AT AT AT AT AC AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
71472610 AACACCTATA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (2 bp):
AT
Found at i:71472594 original size:10 final size:10
Alignment explanation
Indices: 71472565--71472611 Score: 60
Period size: 10 Copynumber: 4.8 Consensus size: 10
71472555 ATATTTTTGT
*
71472565 TATATAATTA
1 TATATAAATA
71472575 -ATATAAATA
1 TATATAAATA
*
71472584 TATATACATA
1 TATATAAATA
*
71472594 TATATATATA
1 TATATAAATA
71472604 TATATAAA
1 TATATAAA
71472612 CACCTATACT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
9 8 0.25
10 24 0.75
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (10 bp):
TATATAAATA
Found at i:71482257 original size:4 final size:5
Alignment explanation
Indices: 71482230--71482268 Score: 53
Period size: 5 Copynumber: 7.6 Consensus size: 5
71482220 TTCAACTGTG
71482230 AAAAT AAAAT AAAAAT AAAA- ATAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT -AAAAT AAAAT A-AAAT AAAAT AAAAT AAA
71482269 GAACACATAG
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
4 1 0.03
5 24 0.77
6 6 0.19
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:71486275 original size:14 final size:14
Alignment explanation
Indices: 71486258--71486284 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
71486248 AAATATCATA
71486258 TTAATTTAAATTTG
1 TTAATTTAAATTTG
71486272 TTAATTTAAATTT
1 TTAATTTAAATTT
71486285 ATTCGATCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (14 bp):
TTAATTTAAATTTG
Found at i:71505375 original size:625 final size:624
Alignment explanation
Indices: 71502851--71505973 Score: 6095
Period size: 624 Copynumber: 5.0 Consensus size: 624
71502841 ATACCCTGTA
* *
71502851 TCTCCATCATGTATGTCTTCTTTTTACCCCTGTCAACCTCTCTGTTCGAGGCTGTAATTATAAAA
1 TCTCCATCATGTATGTCTTCTTTTTACCCCTGTCGACCTCTCTGTTCGTGGCTGTAATTATAAAA
* *
71502916 CAGCAGAACAAGGGTGCTGTGAAAAGGAGAGACTGGACGTAAAAGAACAAGTTTCACAATTTCTT
66 CAGCAGAACAAGGGTGCTGTGAAAAGGAGAGACTGGACGTAAAAGGACAAGTTTCACAACTTCTT
* *
71502981 TTTAAATGATTGAGTGTTGTTCAACAAATTTTCCGACGAACCCAGAGAATAGAAACATCACTATT
131 TTCAAATGATTGAGTGTTGTTCAACATATTTTCCGACGAACCCAGAGAATAGAAACATCACTATT
*
71503046 TGCTATCTCTTTCGGTCCACTCCTTAGCTGTTTTATTTAAAAGCCTTCTATTATTTGTTCTTCTG
196 TGCTATCTCTTCCGGTCCACTCCTTAGCTGTTTTATTTAAAAGCCTTCTATTATTTGTTCTTCTG
71503111 TTTTATTTAAAACCCCTCTAAATAAGCCAGGGATTTTTTATAATTAGTTTTATATGTTATGCATT
261 TTTTATTTAAAACCCCTCTAAATAAGCCAGGGATTTTTTATAATTAGTTTTATATGTTATGCATT
71503176 AAAAATAATTTAAAAAAAAAGTAAAAGGAAGATGGAAAATAAGCTAGAAATTTTTCATGTATTCA
326 AAAAATAATTTAAAAAAAAAGTAAAAGGAAGATGGAAAATAAGCTAGAAATTTTTCATGTATTCA
71503241 AATTTCACGTTTTATTTATAAACTCTTTACATTCAATTCAATAAAGTATAAGTAAATAAGTCTTT
391 AATTTCACGTTTTATTTATAAACTCTTTACATTCAATTCAATAAAGTATAAGTAAATAAGTCTTT
71503306 TTAATTATTTCATTAAAAACATCTAATTTACGCTGATGTTTATAAATGAACTAGAGAGTTTTATC
456 TTAATTATTTCATTAAAAACATCTAATTTACGCTGATGTTTATAAATGAACTAGAGAGTTTTATC
71503371 TCATCACTTCAATTAGAGTTTAAGAAGACTATAGAGATCTATTATTAATACAACACTCTCACTTA
521 TCATCACTTCAATTAGAGTTTAAGAAGACTATAGAGATCTATTATTAATACAACACTCTCACTTA
71503436 GATGTCTATAAAAGAAAAAAGGGTAAACTACAAAAATAG
586 GATGTCTATAAAAGAAAAAAGGGTAAACTACAAAAATAG
71503475 TCTCCATCATGTATGTCTTCTTTTTACCCCTGTCGACCTCTCTGTTCGTGGCTGTAATTATAAAA
1 TCTCCATCATGTATGTCTTCTTTTTACCCCTGTCGACCTCTCTGTTCGTGGCTGTAATTATAAAA
*
71503540 TAGCAGAACAAGGGTGCTGTGAAAAGGAGAGACTGGACGTAAAAGGACAAGTTTCACAACTTCTT
66 CAGCAGAACAAGGGTGCTGTGAAAAGGAGAGACTGGACGTAAAAGGACAAGTTTCACAACTTCTT
71503605 TTCAAATGATTGAGTGTTGTTCAACATATTTTCCGACGAACCCAGAGAATAGAAACATCACTATT
131 TTCAAATGATTGAGTGTTGTTCAACATATTTTCCGACGAACCCAGAGAATAGAAACATCACTATT
71503670 TGCTATCTCTTCCGGTCCACTCCTTAGCTGTTTTATTTAAAAGCCTTCTATTATTTGTTCTTCTG
196 TGCTATCTCTTCCGGTCCACTCCTTAGCTGTTTTATTTAAAAGCCTTCTATTATTTGTTCTTCTG
71503735 TTTTATTTAAAACCCCTCTAAATAAGCCAGGGATTTTTTATAATTAGTTTTATATGTTATGCATT
261 TTTTATTTAAAACCCCTCTAAATAAGCCAGGGATTTTTTATAATTAGTTTTATATGTTATGCATT
*
71503800 AAAAATAATTTAAAAAAAAAGTAAAAGAAAGATGGAAAATAAGCTAGAAATTTTTCATGTATTCA
326 AAAAATAATTTAAAAAAAAAGTAAAAGGAAGATGGAAAATAAGCTAGAAATTTTTCATGTATTCA
71503865 AATTTCACGTTTTATTTATAAACTCTTTACATTCAATTCAATAAAGTATAAGTAAATAAGTCTTT
391 AATTTCACGTTTTATTTATAAACTCTTTACATTCAATTCAATAAAGTATAAGTAAATAAGTCTTT
71503930 TTAATTATTTCATTAAAAACATCTAATTTACGCTGATGTTTATAAATGAACTAGAGAGTTTTATC
456 TTAATTATTTCATTAAAAACATCTAATTTACGCTGATGTTTATAAATGAACTAGAGAGTTTTATC
*
71503995 TCATTACTTCAATTAGAGTTTAAGAAGACTATAGAGATCTATTATTAATACAACACTCTCACTTA
521 TCATCACTTCAATTAGAGTTTAAGAAGACTATAGAGATCTATTATTAATACAACACTCTCACTTA
71504060 GATGTCTATAAAAGAAAAAAGGGTAAACTACAAAAATAG
586 GATGTCTATAAAAGAAAAAAGGGTAAACTACAAAAATAG
*
71504099 TCTCCATCATGTATGTCTTCTTTTTACCCCTATCGACCTCTCTGTTCGTGGCTGTAATTATAAAA
1 TCTCCATCATGTATGTCTTCTTTTTACCCCTGTCGACCTCTCTGTTCGTGGCTGTAATTATAAAA
71504164 CAGCAGAACAAGGGTGCTGTGAAAAGGAGAGACTGGACGTAAAAGGACAAGTTTCACAACTTCTT
66 CAGCAGAACAAGGGTGCTGTGAAAAGGAGAGACTGGACGTAAAAGGACAAGTTTCACAACTTCTT
*
71504229 TTCAAATGATTGAGTGTTGTTCAACATATTTTCCGATGAACCCAGAGAATAGAAACATCACTATT
131 TTCAAATGATTGAGTGTTGTTCAACATATTTTCCGACGAACCCAGAGAATAGAAACATCACTATT
71504294 TGCTATCTCTTCCGGTCCACTCCTTAGCTGTTTTATTTAAAAGCCTTCTATTATTTGTTCTTCTG
196 TGCTATCTCTTCCGGTCCACTCCTTAGCTGTTTTATTTAAAAGCCTTCTATTATTTGTTCTTCTG
71504359 TTTTATTTAAAACCCCTCTAAATAAGCCAGGGATTTTTTATAATTAGTTTTATATGTTATGCATT
261 TTTTATTTAAAACCCCTCTAAATAAGCCAGGGATTTTTTATAATTAGTTTTATATGTTATGCATT
71504424 AAAAATAATTT-AAAAAAAAGTAAAAGGAAGATGGAAAATAAGCTAGAAATTTTTCATGTATTCA
326 AAAAATAATTTAAAAAAAAAGTAAAAGGAAGATGGAAAATAAGCTAGAAATTTTTCATGTATTCA
71504488 AATTTCACGTTTTATTTATAAACTCTTTACATTCAATTCAATAAAGTATAAGTAAATAAGTCTTT
391 AATTTCACGTTTTATTTATAAACTCTTTACATTCAATTCAATAAAGTATAAGTAAATAAGTCTTT
71504553 TTAATTATTTCATTAAAAACATCTAATTTACGCTGATGTTTATAAATGAACTAGAGAGTTTTATC
456 TTAATTATTTCATTAAAAACATCTAATTTACGCTGATGTTTATAAATGAACTAGAGAGTTTTATC
71504618 TCATCACTTCAATTAGAGTTTAAGAAGACTATAGAGATCTATTATTAATACAACACTCTCACTTA
521 TCATCACTTCAATTAGAGTTTAAGAAGACTATAGAGATCTATTATTAATACAACACTCTCACTTA
71504683 GATGTCTATAAAAGAAAAAAGGGTAAACTACAAAAATAG
586 GATGTCTATAAAAGAAAAAAGGGTAAACTACAAAAATAG
71504722 TCTCCATCATGTATGTCTTCTTTTTACCCCTGTCGACCTCTCTGTTCGTGGCTGTAATTATAAAA
1 TCTCCATCATGTATGTCTTCTTTTTACCCCTGTCGACCTCTCTGTTCGTGGCTGTAATTATAAAA
71504787 CAGCAGAACAAGGGTGCTGTGAAAAGGAGAGACTGGACGTAAAAGGACAAGTTTCACAACTTCTT
66 CAGCAGAACAAGGGTGCTGTGAAAAGGAGAGACTGGACGTAAAAGGACAAGTTTCACAACTTCTT
*
71504852 GTCAAATGATTGAGTGTTGTTCAACATATTTTCCGACGAACCCAGAGAATAGAAACATCACTATT
131 TTCAAATGATTGAGTGTTGTTCAACATATTTTCCGACGAACCCAGAGAATAGAAACATCACTATT
71504917 TGCTATCTCTTCCGGTCCACTCCTTAGCTGTTTTATTTAAAAGCCTTCTATTATTTGTTCTTCTG
196 TGCTATCTCTTCCGGTCCACTCCTTAGCTGTTTTATTTAAAAGCCTTCTATTATTTGTTCTTCTG
71504982 TTTTATTTAAAACCCCTCTAAATAAGCCAGGGATTTTTTATAATTAGTTTTATATGTTATGCATT
261 TTTTATTTAAAACCCCTCTAAATAAGCCAGGGATTTTTTATAATTAGTTTTATATGTTATGCATT
71505047 AAAAATAATTTAAAAAACAAAGTAAAAGGAAGATGGAAAATAAGCTAGAAATTTTTCATGTATTC
326 AAAAATAATTTAAAAAA-AAAGTAAAAGGAAGATGGAAAATAAGCTAGAAATTTTTCATGTATTC
71505112 AAATTTCACGTTTTATTTATAAACTCTTTACATTCAATTCAATAAAGTATAAGTAAATAAGTCTT
390 AAATTTCACGTTTTATTTATAAACTCTTTACATTCAATTCAATAAAGTATAAGTAAATAAGTCTT
71505177 TTTAATTATTTCATTAAAAACATCTAATTTACGCTGATGTTTATAAATGAACTAGAGAGTTTTAT
455 TTTAATTATTTCATTAAAAACATCTAATTTACGCTGATGTTTATAAATGAACTAGAGAGTTTTAT
71505242 CTCATCACTTCAATTAGAGTTTAAGAAGACTATAGAGATCTATTATTAATACAACACTCTCACTT
520 CTCATCACTTCAATTAGAGTTTAAGAAGACTATAGAGATCTATTATTAATACAACACTCTCACTT
71505307 AGATGTCTATAAAAGAAAAAAGGGTAAACTACAAAAATAG
585 AGATGTCTATAAAAGAAAAAAGGGTAAACTACAAAAATAG
71505347 TCTCCATCATGTATGTCTTCTTTTTACCCCTGTCGACCTCTCTGTTCGTGGCTGTAATTATAAAA
1 TCTCCATCATGTATGTCTTCTTTTTACCCCTGTCGACCTCTCTGTTCGTGGCTGTAATTATAAAA
71505412 CAGCAGAACAAGGGTGCTGTGAAAAGGAGAGACTGGACGTAAAAGGACAAGTTTCACAACTTCTT
66 CAGCAGAACAAGGGTGCTGTGAAAAGGAGAGACTGGACGTAAAAGGACAAGTTTCACAACTTCTT
71505477 TTCAAATGATTGAGTGTTGTTCAACATATTTTCCGACGAACCCAGAGAATAGAAACATCACTATT
131 TTCAAATGATTGAGTGTTGTTCAACATATTTTCCGACGAACCCAGAGAATAGAAACATCACTATT
71505542 TGCTATCTCTTCCGGTCCACTCCTTAGCTGTTTTATTTAAAAGCCTTCTATTATTTGTTCTTCTG
196 TGCTATCTCTTCCGGTCCACTCCTTAGCTGTTTTATTTAAAAGCCTTCTATTATTTGTTCTTCTG
71505607 TTTTATTTAAAACCCCTCTAAATAAGCCAGGGATTTTTTATAATTAGTTTTATATGTTATGCATT
261 TTTTATTTAAAACCCCTCTAAATAAGCCAGGGATTTTTTATAATTAGTTTTATATGTTATGCATT
71505672 AAAAATAATTTTAAAAAAAAAGTAAAAGGAAGATGGAAAATAAGCTAGAAATTTTTCATGTATTC
326 AAAAATAA-TTTAAAAAAAAAGTAAAAGGAAGATGGAAAATAAGCTAGAAATTTTTCATGTATTC
*
71505737 AAATTTCACGTTTTATTTATAAACTATTTACATTCAATTCAATAAAGTATAAGTAAATAAGTCTT
390 AAATTTCACGTTTTATTTATAAACTCTTTACATTCAATTCAATAAAGTATAAGTAAATAAGTCTT
71505802 TTTAATTATTTCATTAAAAACATCTAATTTACGCTGATGTTTATAAATGAACTAGAGAGTTTTAT
455 TTTAATTATTTCATTAAAAACATCTAATTTACGCTGATGTTTATAAATGAACTAGAGAGTTTTAT
71505867 CTCATCACTTCAATTAGAGTTTAAGAAGACTATAGAGATCTATTATTAATACAACACTCTCACTT
520 CTCATCACTTCAATTAGAGTTTAAGAAGACTATAGAGATCTATTATTAATACAACACTCTCACTT
71505932 AGATGTCTATAAAAGAAAAAAGGGTAAACTACAAAAATAG
585 AGATGTCTATAAAAGAAAAAAGGGTAAACTACAAAAATAG
71505972 TC
1 TC
71505974 ACTTTTGTTT
Statistics
Matches: 2476, Mismatches: 20, Indels: 5
0.99 0.01 0.00
Matches are distributed among these distances:
623 618 0.25
624 952 0.38
625 897 0.36
626 9 0.00
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.36
Consensus pattern (624 bp):
TCTCCATCATGTATGTCTTCTTTTTACCCCTGTCGACCTCTCTGTTCGTGGCTGTAATTATAAAA
CAGCAGAACAAGGGTGCTGTGAAAAGGAGAGACTGGACGTAAAAGGACAAGTTTCACAACTTCTT
TTCAAATGATTGAGTGTTGTTCAACATATTTTCCGACGAACCCAGAGAATAGAAACATCACTATT
TGCTATCTCTTCCGGTCCACTCCTTAGCTGTTTTATTTAAAAGCCTTCTATTATTTGTTCTTCTG
TTTTATTTAAAACCCCTCTAAATAAGCCAGGGATTTTTTATAATTAGTTTTATATGTTATGCATT
AAAAATAATTTAAAAAAAAAGTAAAAGGAAGATGGAAAATAAGCTAGAAATTTTTCATGTATTCA
AATTTCACGTTTTATTTATAAACTCTTTACATTCAATTCAATAAAGTATAAGTAAATAAGTCTTT
TTAATTATTTCATTAAAAACATCTAATTTACGCTGATGTTTATAAATGAACTAGAGAGTTTTATC
TCATCACTTCAATTAGAGTTTAAGAAGACTATAGAGATCTATTATTAATACAACACTCTCACTTA
GATGTCTATAAAAGAAAAAAGGGTAAACTACAAAAATAG
Found at i:71506867 original size:17 final size:17
Alignment explanation
Indices: 71506847--71506880 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
71506837 AGGTTTAGGT
71506847 TTAAAAATTTTAATTAA
1 TTAAAAATTTTAATTAA
**
71506864 TTAAATTTTTTAATTAA
1 TTAAAAATTTTAATTAA
71506881 AAATCTATTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TTAAAAATTTTAATTAA
Found at i:71511123 original size:34 final size:34
Alignment explanation
Indices: 71511074--71511143 Score: 122
Period size: 34 Copynumber: 2.1 Consensus size: 34
71511064 CCTAAAGATA
71511074 AAGTAAAAATAATCTTAAAAATAAAATAAAAAGT
1 AAGTAAAAATAATCTTAAAAATAAAATAAAAAGT
* *
71511108 AAGTCAAAATGATCTTAAAAATAAAATAAAAAGT
1 AAGTAAAAATAATCTTAAAAATAAAATAAAAAGT
71511142 AA
1 AA
71511144 TTTAAAAAGG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.66, C:0.04, G:0.07, T:0.23
Consensus pattern (34 bp):
AAGTAAAAATAATCTTAAAAATAAAATAAAAAGT
Found at i:71511180 original size:20 final size:19
Alignment explanation
Indices: 71511155--71511192 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
71511145 TTAAAAAGGT
*
71511155 AAATAAAGATAAAAGTAAAC
1 AAATAAAAAT-AAAGTAAAC
71511175 AAATAAAAATAAAGTAAA
1 AAATAAAAATAAAGTAAA
71511193 GTCTTTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.74, C:0.03, G:0.08, T:0.16
Consensus pattern (19 bp):
AAATAAAAATAAAGTAAAC
Found at i:71518189 original size:22 final size:23
Alignment explanation
Indices: 71518152--71518203 Score: 67
Period size: 22 Copynumber: 2.4 Consensus size: 23
71518142 GGGATGTCAT
71518152 GACA-CTA-AAGGCTGGTGTTGC
1 GACATCTATAAGGCTGGTGTTGC
*
71518173 GACATCTATAAGG-TGGTGTTGT
1 GACATCTATAAGGCTGGTGTTGC
71518195 GAC-TCTATA
1 GACATCTATA
71518204 GGCAAAATTC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 10 0.36
22 14 0.50
23 4 0.14
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (23 bp):
GACATCTATAAGGCTGGTGTTGC
Found at i:71519039 original size:88 final size:89
Alignment explanation
Indices: 71518884--71519060 Score: 311
Period size: 88 Copynumber: 2.0 Consensus size: 89
71518874 ATGCCATTTA
*
71518884 AATATTCAACTTACCGTTTGAATCTCTTTATGAAGTCTATTGACTCATTCGTATTCAATTCAACC
1 AATATTCAACTTACCATTTGAATCTCTTTATGAAGTCTATTGACTCATTCGTATTCAATTCAACC
* *
71518949 CCTAGGGCTCAATTCTAATTGGAT
66 CCTAAGGCTCAATTCTAATCGGAT
*
71518973 AATATTCAACTTACCATTTGAATCTC-TTATGAAGTCTATTGACTCATTCGTATTCAATTCAGCC
1 AATATTCAACTTACCATTTGAATCTCTTTATGAAGTCTATTGACTCATTCGTATTCAATTCAACC
71519037 CCTAAGGCTCAATTCTAATCGGAT
66 CCTAAGGCTCAATTCTAATCGGAT
71519061 CGTACAATCT
Statistics
Matches: 84, Mismatches: 4, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
88 59 0.70
89 25 0.30
ACGTcount: A:0.29, C:0.22, G:0.12, T:0.37
Consensus pattern (89 bp):
AATATTCAACTTACCATTTGAATCTCTTTATGAAGTCTATTGACTCATTCGTATTCAATTCAACC
CCTAAGGCTCAATTCTAATCGGAT
Found at i:71520115 original size:15 final size:15
Alignment explanation
Indices: 71520066--71520119 Score: 58
Period size: 15 Copynumber: 3.5 Consensus size: 15
71520056 CCCAAAGGTG
71520066 TTAATTAAGCTTAAT
1 TTAATTAAGCTTAAT
*
71520081 ATTAATTAAGCATAGA-
1 -TTAATTAAGCTTA-AT
71520097 TTAATTAAG-TTAAT
1 TTAATTAAGCTTAAT
71520111 CTTAATTAA
1 -TTAATTAA
71520120 TACCTAATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
13 1 0.03
14 2 0.06
15 17 0.52
16 12 0.36
17 1 0.03
ACGTcount: A:0.44, C:0.06, G:0.07, T:0.43
Consensus pattern (15 bp):
TTAATTAAGCTTAAT
Found at i:71522260 original size:26 final size:25
Alignment explanation
Indices: 71522225--71522363 Score: 106
Period size: 24 Copynumber: 5.6 Consensus size: 25
71522215 ACAGCTCTTA
*
71522225 TGAGCGTCCCGATATATGGCTCTTCG
1 TGAGCTTCCCGATATATGGCTC-TCG
* *
71522251 TGAGCTTCCCGAT-TAAAGGCTCTTTG
1 TGAGCTTCCCGATAT-ATGGCTC-TCG
* *
71522277 TGAGCTTCCTGAT-TAGTGGCTCTCC
1 TGAGCTTCCCGATATA-TGGCTCTCG
* * *
71522302 AGAGCTTCCCGATAT-TGGCTCGCT
1 TGAGCTTCCCGATATATGGCTCTCG
* * *
71522326 TGAACTTCCCGATAT-TGGCTCACT
1 TGAGCTTCCCGATATATGGCTCTCG
*
71522350 TGAACTTCCCGATA
1 TGAGCTTCCCGATA
71522364 ATAGGTTACC
Statistics
Matches: 96, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
24 42 0.44
25 14 0.15
26 40 0.42
ACGTcount: A:0.18, C:0.27, G:0.22, T:0.32
Consensus pattern (25 bp):
TGAGCTTCCCGATATATGGCTCTCG
Found at i:71522333 original size:24 final size:24
Alignment explanation
Indices: 71522306--71522363 Score: 107
Period size: 24 Copynumber: 2.4 Consensus size: 24
71522296 CTCTCCAGAG
*
71522306 CTTCCCGATATTGGCTCGCTTGAA
1 CTTCCCGATATTGGCTCACTTGAA
71522330 CTTCCCGATATTGGCTCACTTGAA
1 CTTCCCGATATTGGCTCACTTGAA
71522354 CTTCCCGATA
1 CTTCCCGATA
71522364 ATAGGTTACC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.19, C:0.31, G:0.17, T:0.33
Consensus pattern (24 bp):
CTTCCCGATATTGGCTCACTTGAA
Found at i:71522442 original size:24 final size:23
Alignment explanation
Indices: 71522415--71522462 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
71522405 TATTCGTTTT
*
71522415 TGGCTCGCATGAGCTTCCTGATTA
1 TGGCTCGCATAAGCTTCCTG-TTA
**
71522439 TGGCTCTTATAAGCTTCCTGTTA
1 TGGCTCGCATAAGCTTCCTGTTA
71522462 T
1 T
71522463 ACAACCCAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 4 0.19
24 17 0.81
ACGTcount: A:0.17, C:0.23, G:0.21, T:0.40
Consensus pattern (23 bp):
TGGCTCGCATAAGCTTCCTGTTA
Found at i:71522519 original size:25 final size:25
Alignment explanation
Indices: 71522426--71522519 Score: 91
Period size: 25 Copynumber: 3.8 Consensus size: 25
71522416 GGCTCGCATG
* * *
71522426 AGCTTCCTGAT-TATGGCTCTTATA
1 AGCTTCCTGTTATATAGCTCATATA
* * * *
71522450 AGCTTCCTGTTATACAACCCAGATA
1 AGCTTCCTGTTATATAGCTCATATA
*
71522475 AGCTTCCTGTTACATAGCTCATATA
1 AGCTTCCTGTTATATAGCTCATATA
* *
71522500 AGCTTCCCGTTATATGGCTC
1 AGCTTCCTGTTATATAGCTC
71522520 GAGAGAGAGC
Statistics
Matches: 54, Mismatches: 15, Indels: 1
0.77 0.21 0.01
Matches are distributed among these distances:
24 10 0.19
25 44 0.81
ACGTcount: A:0.24, C:0.26, G:0.15, T:0.35
Consensus pattern (25 bp):
AGCTTCCTGTTATATAGCTCATATA
Found at i:71528167 original size:25 final size:25
Alignment explanation
Indices: 71528139--71528442 Score: 276
Period size: 25 Copynumber: 12.2 Consensus size: 25
71528129 AAAATGTTTT
71528139 TGGCGTATCATTTGGAAAGCCTTTG
1 TGGCGTATCATTTGGAAAGCCTTTG
*
71528164 TGGCATATCATTTGGAAAGCCTTTG
1 TGGCGTATCATTTGGAAAGCCTTTG
* * * *
71528189 TGGTGAAT-TTTCTAGGAAA-CTTTTG
1 TGGCGTATCATT-T-GGAAAGCCTTTG
* * *
71528214 TGGCATATCATTTAGAAATCCTTTG
1 TGGCGTATCATTTGGAAAGCCTTTG
* * ** *
71528239 TGGTGAATTC-TTTGGAAAGGTTTTT
1 TGGCGTA-TCATTTGGAAAGCCTTTG
* * *
71528264 TGACATATCATTTGGAAAGTCTTTG
1 TGGCGTATCATTTGGAAAGCCTTTG
* * *
71528289 TGGCGAATTC-TCTAGAAAGCCTTTG
1 TGGCGTA-TCATTTGGAAAGCCTTTG
*
71528314 TGGTGTATCATTTGGAAAG-CTCTTG
1 TGGCGTATCATTTGGAAAGCCT-TTG
* * *
71528339 TGGCGAATTATTTGGAAAGCCCTTG
1 TGGCGTATCATTTGGAAAGCCTTTG
71528364 TGGCGTATCATTTGGAAAGCCTTTG
1 TGGCGTATCATTTGGAAAGCCTTTG
* * *
71528389 TGGCGAATTATTTGGAAAGCCCTTG
1 TGGCGTATCATTTGGAAAGCCTTTG
* *
71528414 TGGCATATCATTTGGAAAGCCTTGG
1 TGGCGTATCATTTGGAAAGCCTTTG
71528439 TGGC
1 TGGC
71528443 AAATTTTCTA
Statistics
Matches: 217, Mismatches: 52, Indels: 20
0.75 0.18 0.07
Matches are distributed among these distances:
24 12 0.06
25 193 0.89
26 12 0.06
ACGTcount: A:0.23, C:0.14, G:0.26, T:0.37
Consensus pattern (25 bp):
TGGCGTATCATTTGGAAAGCCTTTG
Found at i:71528237 original size:50 final size:50
Alignment explanation
Indices: 71528139--71528447 Score: 363
Period size: 50 Copynumber: 6.2 Consensus size: 50
71528129 AAAATGTTTT
* *
71528139 TGGCGTATCATTTGGAAAGCCTTTGTGGCATATCATTTGGAAAGCCTTTG
1 TGGCGAATTATTTGGAAAGCCTTTGTGGCATATCATTTGGAAAGCCTTTG
* * * *
71528189 TGGTGAATT-TTCTAGGAAA-CTTTTGTGGCATATCATTTAGAAATCCTTTG
1 TGGCGAATTATT-T-GGAAAGCCTTTGTGGCATATCATTTGGAAAGCCTTTG
* * ** * * *
71528239 TGGTGAATTCTTTGGAAAGGTTTTTTGACATATCATTTGGAAAGTCTTTG
1 TGGCGAATTATTTGGAAAGCCTTTGTGGCATATCATTTGGAAAGCCTTTG
* * * **
71528289 TGGCGAATTCTCTAGAAAGCCTTTGTGGTGTATCATTTGGAAAG-CTCTTG
1 TGGCGAATTATTTGGAAAGCCTTTGTGGCATATCATTTGGAAAGCCT-TTG
* *
71528339 TGGCGAATTATTTGGAAAGCCCTTGTGGCGTATCATTTGGAAAGCCTTTG
1 TGGCGAATTATTTGGAAAGCCTTTGTGGCATATCATTTGGAAAGCCTTTG
* *
71528389 TGGCGAATTATTTGGAAAGCCCTTGTGGCATATCATTTGGAAAGCCTTGG
1 TGGCGAATTATTTGGAAAGCCTTTGTGGCATATCATTTGGAAAGCCTTTG
*
71528439 TGGCAAATT
1 TGGCGAATT
71528448 TTCTAGACAG
Statistics
Matches: 224, Mismatches: 29, Indels: 12
0.85 0.11 0.05
Matches are distributed among these distances:
49 9 0.04
50 206 0.92
51 9 0.04
ACGTcount: A:0.24, C:0.14, G:0.25, T:0.37
Consensus pattern (50 bp):
TGGCGAATTATTTGGAAAGCCTTTGTGGCATATCATTTGGAAAGCCTTTG
Found at i:71532783 original size:61 final size:58
Alignment explanation
Indices: 71532681--71532796 Score: 169
Period size: 61 Copynumber: 1.9 Consensus size: 58
71532671 TCAAAATAAA
* *
71532681 TATTAAATTAATATAATACTTATCAAGATAAATATTAAATTAAATTTAATATTAAATC
1 TATTAAATTAATAGAATACTTATCAAGATAAATATTAAATTAAATTAAATATTAAATC
* *
71532739 TATTAAATTAATAGAATATTTATCTACAAGATTAATATTAAATTAAATTAAATATTAA
1 TATTAAATTAATAGAATACTTA--T-CAAGATAAATATTAAATTAAATTAAATATTAA
71532797 GATAATCATT
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
58 20 0.39
60 1 0.02
61 30 0.59
ACGTcount: A:0.52, C:0.04, G:0.03, T:0.41
Consensus pattern (58 bp):
TATTAAATTAATAGAATACTTATCAAGATAAATATTAAATTAAATTAAATATTAAATC
Found at i:71532822 original size:20 final size:18
Alignment explanation
Indices: 71532770--71532823 Score: 58
Period size: 20 Copynumber: 2.9 Consensus size: 18
71532760 ATCTACAAGA
71532770 TTAATATTAAATTAA-AT
1 TTAATATTAAATTAATAT
*
71532787 TAAATATTAAGA-TAATCATT
1 TTAATATTAA-ATTAAT-A-T
71532807 TTAATATTAAATTAATA
1 TTAATATTAAATTAATA
71532824 AAATACTATC
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
17 12 0.40
18 1 0.03
19 3 0.10
20 14 0.47
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (18 bp):
TTAATATTAAATTAATAT
Found at i:71533985 original size:24 final size:24
Alignment explanation
Indices: 71533953--71533999 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
71533943 TAGTAAAAAC
71533953 ATGTCGTACACAAGTCATGTACCA
1 ATGTCGTACACAAGTCATGTACCA
71533977 ATGTCGTACACAAGTCATGTACC
1 ATGTCGTACACAAGTCATGTACC
71534000 CAACATACCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.26
Consensus pattern (24 bp):
ATGTCGTACACAAGTCATGTACCA
Found at i:71540108 original size:33 final size:34
Alignment explanation
Indices: 71540030--71540127 Score: 101
Period size: 34 Copynumber: 2.9 Consensus size: 34
71540020 GTTTCAGTTA
* * * *
71540030 GGGCCTTAGCCCATATCAGTAACAGTAGCAGTCT
1 GGGCCTAAGCCCATTTTAGTAACAGTAGCAGTCG
* * *
71540064 GGGCCTGAGCCCATTTTAGTAATAGTATCAGT-G
1 GGGCCTAAGCCCATTTTAGTAACAGTAGCAGTCG
* *
71540097 GGGCCTAAGCCCATTATAGTATCAGTA-CAGT
1 GGGCCTAAGCCCATTTTAGTAACAGTAGCAGT
71540128 ATGCAATCAG
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
32 4 0.07
33 23 0.43
34 27 0.50
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (34 bp):
GGGCCTAAGCCCATTTTAGTAACAGTAGCAGTCG
Found at i:71543438 original size:8 final size:8
Alignment explanation
Indices: 71543425--71543451 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
71543415 GTTTTCCTAC
71543425 AAAAAAAT
1 AAAAAAAT
71543433 AAAAAAAT
1 AAAAAAAT
71543441 AAAAAAAT
1 AAAAAAAT
71543449 AAA
1 AAA
71543452 TTTGTAAACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (8 bp):
AAAAAAAT
Found at i:71551175 original size:6 final size:6
Alignment explanation
Indices: 71551164--71551192 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
71551154 TTTTTCCTAA
71551164 AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
71551193 AATAAATTCG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:71557369 original size:22 final size:22
Alignment explanation
Indices: 71557317--71557374 Score: 53
Period size: 22 Copynumber: 2.6 Consensus size: 22
71557307 GTACGGGTTC
* *
71557317 AGCACTTCAGTGCTCTCTACTT
1 AGCACTTCAATGCTCTATACTT
* * *
71557339 AGTAGTTCAATGCTCTATATTT
1 AGCACTTCAATGCTCTATACTT
* *
71557361 AGCATTTCACTGCT
1 AGCACTTCAATGCT
71557375 TTTTGCTGTG
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (22 bp):
AGCACTTCAATGCTCTATACTT
Found at i:71558421 original size:18 final size:19
Alignment explanation
Indices: 71558377--71558427 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 19
71558367 ATAACAGTGG
*
71558377 CAGTAATCAGTGTAGTAAC
1 CAGTAATCAGTGCAGTAAC
* *
71558396 CA-TGATCAATGCAGTAA-
1 CAGTAATCAGTGCAGTAAC
71558413 CAGTAATCAGTGCAG
1 CAGTAATCAGTGCAG
71558428 AATGCAAACA
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
17 2 0.08
18 22 0.85
19 2 0.08
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.24
Consensus pattern (19 bp):
CAGTAATCAGTGCAGTAAC
Found at i:71558835 original size:27 final size:27
Alignment explanation
Indices: 71558786--71558854 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 27
71558776 GAGCAAATCA
* * *
71558786 ATCATTTTACCTTACAGGTGTATTAC-
1 ATCATTTTACCCTATAGGAGTATTACG
*
71558812 AGTCATTTTACCCTATAGGAGTATTTCG
1 A-TCATTTTACCCTATAGGAGTATTACG
71558840 ATCATTTTACCCTAT
1 ATCATTTTACCCTAT
71558855 GAGGGTAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
26 1 0.03
27 35 0.95
28 1 0.03
ACGTcount: A:0.26, C:0.20, G:0.12, T:0.42
Consensus pattern (27 bp):
ATCATTTTACCCTATAGGAGTATTACG
Found at i:71558897 original size:27 final size:27
Alignment explanation
Indices: 71558867--71558940 Score: 121
Period size: 27 Copynumber: 2.7 Consensus size: 27
71558857 GGGTAAAATT
*
71558867 GTCATTTTATCACATAAGGTCAATATC
1 GTCATTTTATCACATAAGGGCAATATC
* *
71558894 GTCATTTTATCATATAAGGGCAATATT
1 GTCATTTTATCACATAAGGGCAATATC
71558921 GTCATTTTATCACATAAGGG
1 GTCATTTTATCACATAAGGG
71558941 TTCAGGTACG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (27 bp):
GTCATTTTATCACATAAGGGCAATATC
Found at i:71560285 original size:12 final size:12
Alignment explanation
Indices: 71560268--71560292 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
71560258 GACAATTTTG
71560268 AGGGAAAAGCTA
1 AGGGAAAAGCTA
71560280 AGGGAAAAGCTA
1 AGGGAAAAGCTA
71560292 A
1 A
71560293 CTTAGCCTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.08, G:0.32, T:0.08
Consensus pattern (12 bp):
AGGGAAAAGCTA
Found at i:71565254 original size:19 final size:18
Alignment explanation
Indices: 71565190--71565254 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 18
71565180 TTGTATGTTC
*
71565190 TTATTTATAATATCATTATT
1 TTATTTATTATAT-A-TATT
*
71565210 TATATTTA-TATTTATATT
1 T-TATTTATTATATATATT
*
71565228 TTA-CTATTATATATATGT
1 TTATTTATTATATATAT-T
71565246 TTATTTATT
1 TTATTTATT
71565255 GTTTGTTTGT
Statistics
Matches: 36, Mismatches: 5, Indels: 9
0.72 0.10 0.18
Matches are distributed among these distances:
16 2 0.06
17 10 0.28
18 9 0.25
19 5 0.14
20 4 0.11
21 6 0.17
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (18 bp):
TTATTTATTATATATATT
Found at i:71572294 original size:12 final size:12
Alignment explanation
Indices: 71572277--71572304 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
71572267 TTCAGAACCA
71572277 CAAATCTGAGGT
1 CAAATCTGAGGT
71572289 CAAATCTGAGGT
1 CAAATCTGAGGT
71572301 CAAA
1 CAAA
71572305 AAATCAAAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.39, C:0.18, G:0.21, T:0.21
Consensus pattern (12 bp):
CAAATCTGAGGT
Found at i:71573480 original size:43 final size:43
Alignment explanation
Indices: 71573432--71573596 Score: 165
Period size: 43 Copynumber: 3.9 Consensus size: 43
71573422 TATCGATATG
71573432 TGATTACATGTAAGACCATGTCTGGGACATTGGCATTATATTA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATTATATTA
** * **
71573475 TGATTATGTGTAAGACCATGTCTGGAACATTGGCATCGTATTA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATTATATTA
* * * * * * *
71573518 TGATTTCGTGTAAGA-CACTTTCTGAGACAGTGGCATCGATA-TG
1 TGATTACATGTAAGACCA-TGTCTGGGACATTGGCAT-TATATTA
* *
71573561 TGATAACATGTAAGACCATGTCTGGGATA-TGGCATT
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATT
71573597 GTGCGAGCTT
Statistics
Matches: 98, Mismatches: 21, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
42 8 0.08
43 86 0.88
44 4 0.04
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (43 bp):
TGATTACATGTAAGACCATGTCTGGGACATTGGCATTATATTA
Found at i:71585167 original size:7 final size:7
Alignment explanation
Indices: 71585155--71585182 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
71585145 TACCTTTACT
71585155 AATTTTA
1 AATTTTA
71585162 AATTTTA
1 AATTTTA
71585169 AATTTTA
1 AATTTTA
71585176 AATTTTA
1 AATTTTA
71585183 TAAAGGGCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (7 bp):
AATTTTA
Done.