Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 215 of 255
Found at i:71895839 original size:54 final size:54
Alignment explanation
Indices: 71895678--71895822 Score: 229
Period size: 54 Copynumber: 2.7 Consensus size: 54
71895668 AGTAATTTTG
*
71895678 TAAATCGAGGATAAAACGGTAATTCTGTAAATTC-AGGGTAAAACGATAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTGTAAA-TCGAGGGTAAAACGATAATTCTA
** * *
71895732 TAAATTAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTA
71895786 TAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGG
1 TAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGG
71895823 ATACTTTGGT
Statistics
Matches: 81, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
53 2 0.02
54 79 0.98
ACGTcount: A:0.42, C:0.10, G:0.21, T:0.28
Consensus pattern (54 bp):
TAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTA
Found at i:71895861 original size:27 final size:27
Alignment explanation
Indices: 71895804--71895863 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
71895794 GGGTAAAACG
** * *
71895804 GTAATTCTGTAAATCGAGGATACTTTG
1 GTAATTCTACAAATCGAGGACACTTTA
* *
71895831 GTAATTCTACAAATTGAGGACATTTTA
1 GTAATTCTACAAATCGAGGACACTTTA
71895858 GTAATT
1 GTAATT
71895864 TGGTAAACTA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.38
Consensus pattern (27 bp):
GTAATTCTACAAATCGAGGACACTTTA
Found at i:71897311 original size:8 final size:8
Alignment explanation
Indices: 71897298--71897329 Score: 50
Period size: 7 Copynumber: 4.2 Consensus size: 8
71897288 AAAAAGAAAG
71897298 AAAAAAAT
1 AAAAAAAT
71897306 -AAAAAAT
1 AAAAAAAT
71897313 -AAAAAAT
1 AAAAAAAT
71897320 AAAAAAAT
1 AAAAAAAT
71897328 AA
1 AA
71897330 CAATAATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 14 0.61
8 9 0.39
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
AAAAAAAT
Found at i:71897316 original size:6 final size:7
Alignment explanation
Indices: 71897299--71897325 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
71897289 AAAAGAAAGA
71897299 AAAAAAT
1 AAAAAAT
71897306 AAAAAAT
1 AAAAAAT
71897313 AAAAAAT
1 AAAAAAT
71897320 AAAAAA
1 AAAAAA
71897326 ATAACAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (7 bp):
AAAAAAT
Found at i:71897335 original size:14 final size:15
Alignment explanation
Indices: 71897299--71897329 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
71897289 AAAAGAAAGA
71897299 AAAAAAT-AAAAAAT
1 AAAAAATAAAAAAAT
71897313 AAAAAATAAAAAAAT
1 AAAAAATAAAAAAAT
71897328 AA
1 AA
71897330 CAATAATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.44
15 9 0.56
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (15 bp):
AAAAAATAAAAAAAT
Found at i:71897963 original size:31 final size:31
Alignment explanation
Indices: 71897911--71898025 Score: 178
Period size: 31 Copynumber: 3.7 Consensus size: 31
71897901 TTAGTCTTGA
* *
71897911 CATAT-ACTGGGCGGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* *
71897941 CATATCACTGGACCGAAACCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
71897972 CATATCACTGGGCTGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
71898003 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
71898026 ACTGTAAACG
Statistics
Matches: 76, Mismatches: 8, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
30 5 0.07
31 71 0.93
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:71898109 original size:42 final size:42
Alignment explanation
Indices: 71898049--71898182 Score: 223
Period size: 42 Copynumber: 3.2 Consensus size: 42
71898039 TGGCCCTTAG
* *
71898049 GCCCATTTCAATATCACATGTTATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
* *
71898091 ACCCATTTCAATATCACATGTAATGTTAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
*
71898133 GCCCATTTCAATATCATATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
71898175 GCCCATTT
1 GCCCATTT
71898183 GGGGTGTAAC
Statistics
Matches: 85, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 85 1.00
ACGTcount: A:0.34, C:0.19, G:0.14, T:0.34
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:71899566 original size:27 final size:27
Alignment explanation
Indices: 71899536--71899685 Score: 122
Period size: 27 Copynumber: 5.5 Consensus size: 27
71899526 ATATTGAGCC
* *
71899536 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCCATATAATCAACT
* ** *
71899563 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCCATATAATCAACT
* * * *
71899590 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCCATATAATCA-ACT
* ** *
71899618 CGCACACTTAGTGCCGTATGGTCAATT
1 CGCACACTTAGTGCCATATAATCAACT
* **
71899645 CGCACACTTAGTG-CATCATATTCATTT
1 CGCACACTTAGTGCCAT-ATAATCAACT
71899672 CGCACACTTAGTGC
1 CGCACACTTAGTGC
71899686 AACAAAGTAG
Statistics
Matches: 98, Mismatches: 22, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
26 2 0.02
27 75 0.77
28 21 0.21
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCCATATAATCAACT
Found at i:71899686 original size:27 final size:27
Alignment explanation
Indices: 71899557--71899712 Score: 108
Period size: 27 Copynumber: 5.7 Consensus size: 27
71899547 TGCTATATAA
* * * *
71899557 TCAACTCGCACATTTAGTGCCACGTA-A
1 TCAATTCGCACACTTAGTG-CACATATG
*
71899584 TCAAATCGCACACTTAGTGCTACATA-G
1 TCAATTCGCACACTTAGTGC-ACATATG
* * *
71899611 TTAGACTCGCACACTTAGTGC-CGTATGG
1 TCA-ATTCGCACACTTAGTGCACATAT-G
71899639 TCAATTCGCACACTTAGTGCATCATAT-
1 TCAATTCGCACACTTAGTGCA-CATATG
* *
71899666 TCATTTCGCACACTTAGTGCAACA-AAG
1 TCAATTCGCACACTTAGTGC-ACATATG
*
71899693 T-AGAATCGCACACTTAGTGC
1 TCA-ATTCGCACACTTAGTGC
71899713 TGTACAATTT
Statistics
Matches: 106, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
26 6 0.06
27 76 0.72
28 20 0.19
29 4 0.04
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (27 bp):
TCAATTCGCACACTTAGTGCACATATG
Found at i:71901966 original size:81 final size:81
Alignment explanation
Indices: 71901852--71902013 Score: 245
Period size: 81 Copynumber: 2.0 Consensus size: 81
71901842 GGGGCAAAAT
* * *
71901852 GGTAATTTTACCCCACAAGGGTATCTTGATAATTCTACCCTATAGGGGTATTTCAGTAATTCTAC
1 GGTAATTCTACCCCACAAGGGTATCTTCATAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC
71901917 CCTACAAGGGTATTTC
66 CCTACAAGGGTATTTC
* * *
71901933 GGTAATTCTACCCTATAAGGGTAT-TTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTA
1 GGTAATTCTACCCCACAAGGGTATCTTCA-TAATTCTACCCTACAGGGGTATTTCAGTAATTCTA
*
71901997 CCCTACAGGGGTATTTC
65 CCCTACAAGGGTATTTC
71902014 AATAATTTTG
Statistics
Matches: 73, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
80 3 0.04
81 70 0.96
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.35
Consensus pattern (81 bp):
GGTAATTCTACCCCACAAGGGTATCTTCATAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC
CCTACAAGGGTATTTC
Found at i:71902009 original size:54 final size:54
Alignment explanation
Indices: 71901853--71902020 Score: 257
Period size: 54 Copynumber: 3.1 Consensus size: 54
71901843 GGGCAAAATG
* * *
71901853 GTAATTTTACCCCACAAGGGTATCTT-GATAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTAT-TTCGGTAATTCTACCCTATAGGGGTATTTCA
*
71901907 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCA
* *
71901961 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCA
*
71902015 ATAATT
1 GTAATT
71902021 TTGTAAATCG
Statistics
Matches: 105, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 2 0.02
54 103 0.98
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.35
Consensus pattern (54 bp):
GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCA
Found at i:71902019 original size:27 final size:27
Alignment explanation
Indices: 71901853--71902020 Score: 221
Period size: 27 Copynumber: 6.2 Consensus size: 27
71901843 GGGCAAAATG
* * *
71901853 GTAATTTTACCCCACAAGGGTATCTTGA
1 GTAATTCTACCCTACAAGGGTAT-TTCA
* *
71901881 -TAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
*
71901907 GTAATTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
*
71901934 GTAATTCTACCCTATAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
71901961 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
*
71901988 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
*
71902015 ATAATT
1 GTAATT
71902021 TTGTAAATCG
Statistics
Matches: 124, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
26 3 0.02
27 121 0.98
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCA
Found at i:71902035 original size:27 final size:26
Alignment explanation
Indices: 71902005--71902239 Score: 129
Period size: 27 Copynumber: 8.7 Consensus size: 26
71901995 TACCCTACAG
*
71902005 GGGTATTTCAATAATTTTGTAAATCGA
1 GGGTATTT-AGTAATTTTGTAAATCGA
** * * *
71902032 GGGTAAAATAGTAATTCTGTAAATTGG
1 GGGT-ATTTAGTAATTTTGTAAATCGA
*
71902059 GGGTACTTTGGTAATTTT-TACAAGTCGA
1 GGGTA-TTTAGTAATTTTGTA-AA-TCGA
**
71902087 GGGTATTTTAGTAATTTTACAAATCGA
1 GGGTA-TTTAGTAATTTTGTAAATCGA
*
71902114 GGGTATTTTAGTAATTTTGCAAA-CTGA
1 GGGTA-TTTAGTAATTTTGTAAATC-GA
* *
71902141 GGGTATTTCGGTAATTTTATAAATC-A
1 GGGTATTT-AGTAATTTTGTAAATCGA
* ** *
71902167 GGGGTATTTTGGTAATTTTACAAA-CCA
1 -GGGTA-TTTAGTAATTTTGTAAATCGA
* *
71902194 GGGGTATTTTGGTAATTTTGTAAA-CTAA
1 -GGGTA-TTTAGTAATTTTGTAAATC-GA
*
71902222 GGGTATTTTGGTAATTTT
1 GGGTA-TTTAGTAATTTT
71902240 ACAAGTCAAT
Statistics
Matches: 173, Mismatches: 23, Indels: 24
0.79 0.10 0.11
Matches are distributed among these distances:
26 9 0.05
27 136 0.79
28 27 0.16
29 1 0.01
ACGTcount: A:0.30, C:0.07, G:0.23, T:0.41
Consensus pattern (26 bp):
GGGTATTTAGTAATTTTGTAAATCGA
Found at i:71902117 original size:82 final size:81
Alignment explanation
Indices: 71902002--71902240 Score: 216
Period size: 81 Copynumber: 2.9 Consensus size: 81
71901992 TTCTACCCTA
* * ** * * *
71902002 CAGGGGTATTTCAATAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATTGGGGGTACTT
1 CAGGGGTATTTTAGTAATTTTACAAATCGAGGGTAAAATAGTAATTCTGCAAACTGAGGGTA-TT
71902067 T-GGTAATTTT-TACAAGT
65 TCGGTAATTTTATA-AA-T
*** *
71902084 C-GAGGGTATTTTAGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTGCAAACTGAGGGTATT
1 CAG-GGGTATTTTAGTAATTTTACAAATCGAGGGTAAAATAGTAATTCTGCAAACTGAGGGTATT
71902148 TCGGTAATTTTATAAAT
65 TCGGTAATTTTATAAAT
* * *** * * * *
71902165 CAGGGGTATTTTGGTAATTTTACAAA-CCAGGGGTATTTTGGTAATTTTGTAAACTAAGGGTATT
1 CAGGGGTATTTTAGTAATTTTACAAATCGA-GGGTAAAATAGTAATTCTGCAAACTGAGGGTATT
*
71902229 TTGGTAATTTTA
65 TCGGTAATTTTA
71902241 CAAGTCAATG
Statistics
Matches: 135, Mismatches: 17, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
80 2 0.01
81 70 0.52
82 61 0.45
83 2 0.01
ACGTcount: A:0.30, C:0.07, G:0.23, T:0.40
Consensus pattern (81 bp):
CAGGGGTATTTTAGTAATTTTACAAATCGAGGGTAAAATAGTAATTCTGCAAACTGAGGGTATTT
CGGTAATTTTATAAAT
Found at i:71902157 original size:54 final size:52
Alignment explanation
Indices: 71902059--71902243 Score: 217
Period size: 54 Copynumber: 3.4 Consensus size: 52
71902049 TGTAAATTGG
* * * *
71902059 GGGTACTTTGGTAATTTTTACAAGTCGAGGGTATTTTAGTAATTTTACAAATCGA
1 GGGTATTTTGGTAA-TTTTACAA-ACGAGGGTATTTTGGTAATTTTATAAATC-A
* * *
71902114 GGGTATTTTAGTAATTTTGCAAACTGAGGGTATTTCGGTAATTTTATAAATCA
1 GGGTATTTTGGTAATTTTACAAAC-GAGGGTATTTTGGTAATTTTATAAATCA
* * *
71902167 GGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACTAA
1 -GGGTATTTTGGTAATTTTACAAACGA-GGGTATTTTGGTAATTTTATAAA-TCA
71902222 GGGTATTTTGGTAATTTTACAA
1 GGGTATTTTGGTAATTTTACAA
71902244 GTCAATGGCA
Statistics
Matches: 113, Mismatches: 13, Indels: 9
0.84 0.10 0.07
Matches are distributed among these distances:
53 3 0.03
54 96 0.85
55 14 0.12
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (52 bp):
GGGTATTTTGGTAATTTTACAAACGAGGGTATTTTGGTAATTTTATAAATCA
Found at i:71902256 original size:27 final size:27
Alignment explanation
Indices: 71902059--71902248 Score: 195
Period size: 27 Copynumber: 7.0 Consensus size: 27
71902049 TGTAAATTGG
* * *
71902059 GGGTACTTTGGTAATTTTTACAAGTCGA
1 GGGTATTTTGGTAA-TTTTACAAATCAA
* *
71902087 GGGTATTTTAGTAATTTTACAAATCGA
1 GGGTATTTTGGTAATTTTACAAATCAA
* * *
71902114 GGGTATTTTAGTAATTTTGCAAA-CTGA
1 GGGTATTTTGGTAATTTTACAAATC-AA
* * *
71902141 GGGTATTTCGGTAATTTTATAAATCAG
1 GGGTATTTTGGTAATTTTACAAATCAA
* *
71902168 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAATCAA
**
71902195 GGGTATTTTGGTAATTTTGTAAA-CTAA
1 GGGTATTTTGGTAATTTTACAAATC-AA
*
71902222 GGGTATTTTGGTAATTTTACAAGTCAA
1 GGGTATTTTGGTAATTTTACAAATCAA
71902249 TGGCATTTCT
Statistics
Matches: 139, Mismatches: 19, Indels: 9
0.83 0.11 0.05
Matches are distributed among these distances:
26 2 0.01
27 123 0.88
28 14 0.10
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAATCAA
Found at i:71902263 original size:54 final size:54
Alignment explanation
Indices: 71902113--71902274 Score: 159
Period size: 54 Copynumber: 3.0 Consensus size: 54
71902103 TTACAAATCG
* * ** * * *
71902113 AGGGTATTTTAGTAATTTTGCAAACTGAGGGTATTTCGGTAATTTTATAAA-TCA
1 AGGGTATTTTGGTAATTTTACAAACCAAGGGCATTTCTGTAATTTTGTAAACT-A
* * *
71902167 GGGGTATTTTGGTAATTTTACAAACCAGGGGTATTT-TGGTAATTTTGTAAACTA
1 AGGGTATTTTGGTAATTTTACAAACCAAGGGCATTTCT-GTAATTTTGTAAACTA
** * *
71902221 AGGGTATTTTGGTAATTTTACAAGTCAATGGCATTTCTGTAA-TTGGTAAACTA
1 AGGGTATTTTGGTAATTTTACAAACCAAGGGCATTTCTGTAATTTTGTAAACTA
71902274 A
1 A
71902275 AGTATTCTAA
Statistics
Matches: 90, Mismatches: 15, Indels: 7
0.80 0.13 0.06
Matches are distributed among these distances:
53 11 0.12
54 77 0.86
55 2 0.02
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (54 bp):
AGGGTATTTTGGTAATTTTACAAACCAAGGGCATTTCTGTAATTTTGTAAACTA
Found at i:71902264 original size:81 final size:81
Alignment explanation
Indices: 71902059--71902248 Score: 256
Period size: 81 Copynumber: 2.3 Consensus size: 81
71902049 TGTAAATTGG
* * *
71902059 GGGTACTTTGGTAATTTTTACAAGTCGAGGGTATTTTAGTAATTTTACAAATCGAGGGTATTTTA
1 GGGTATTTTGGTAA-TTTTACAAGTCAAGGGTATTTTAGTAATTTTACAAACCGAGGGTATTTTA
*
71902124 GTAATTTTGCAAACTGA
65 GTAATTTTGCAAACTAA
* * * * * *
71902141 GGGTATTTCGGTAATTTTATAAATCAGGGGTATTTTGGTAATTTTACAAACC-AGGGGTATTTTG
1 GGGTATTTTGGTAATTTTACAAGTCAAGGGTATTTTAGTAATTTTACAAACCGA-GGGTATTTTA
*
71902205 GTAATTTTGTAAACTAA
65 GTAATTTTGCAAACTAA
71902222 GGGTATTTTGGTAATTTTACAAGTCAA
1 GGGTATTTTGGTAATTTTACAAGTCAA
71902249 TGGCATTTCT
Statistics
Matches: 92, Mismatches: 15, Indels: 3
0.84 0.14 0.03
Matches are distributed among these distances:
80 1 0.01
81 79 0.86
82 12 0.13
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAGTCAAGGGTATTTTAGTAATTTTACAAACCGAGGGTATTTTAG
TAATTTTGCAAACTAA
Found at i:71916031 original size:13 final size:12
Alignment explanation
Indices: 71916012--71916041 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
71916002 CCTAAAAATA
71916012 ATGGTTTAGGTT
1 ATGGTTTAGGTT
71916024 AGTGGTTTAGGTT
1 A-TGGTTTAGGTT
71916037 ATGGT
1 ATGGT
71916042 GAGAAGAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 5 0.29
13 12 0.71
ACGTcount: A:0.17, C:0.00, G:0.37, T:0.47
Consensus pattern (12 bp):
ATGGTTTAGGTT
Found at i:71918732 original size:23 final size:23
Alignment explanation
Indices: 71918689--71918732 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
71918679 GCCAATATAC
*
71918689 AAATCAAATTTCTTAAGATTAAA
1 AAATCAAATTTCTTAAAATTAAA
71918712 AAATCAAATCTTC-TAAAATTA
1 AAATCAAAT-TTCTTAAAATTA
71918733 GAAATCTTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 16 0.84
24 3 0.16
ACGTcount: A:0.52, C:0.11, G:0.02, T:0.34
Consensus pattern (23 bp):
AAATCAAATTTCTTAAAATTAAA
Found at i:71957730 original size:68 final size:68
Alignment explanation
Indices: 71957609--71957739 Score: 235
Period size: 68 Copynumber: 1.9 Consensus size: 68
71957599 CTTAGAATCA
*
71957609 GAAGTTCGCCAGGACAGTAAACATGGGATCATATTGTGTAAAACTATAACTGGGCTATGGCAGCA
1 GAAGTTCGCCAGGACAGTAAACATGGGATCATATTGTGTAAAACCATAACTGGGCTATGGCAGCA
71957674 TAC
66 TAC
* *
71957677 GAAGTTCGCCAGGACAGTAAACATGGGATCATATTGTGTAATACCATAGCTGGGCTATGGCAG
1 GAAGTTCGCCAGGACAGTAAACATGGGATCATATTGTGTAAAACCATAACTGGGCTATGGCAG
71957740 TATATAAAGT
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
68 60 1.00
ACGTcount: A:0.32, C:0.18, G:0.27, T:0.24
Consensus pattern (68 bp):
GAAGTTCGCCAGGACAGTAAACATGGGATCATATTGTGTAAAACCATAACTGGGCTATGGCAGCA
TAC
Found at i:71958828 original size:17 final size:17
Alignment explanation
Indices: 71958808--71958842 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
71958798 TAATTTTTTA
71958808 TAGAACATAGTTATGGT
1 TAGAACATAGTTATGGT
71958825 TAGAACATAGTTATGGT
1 TAGAACATAGTTATGGT
71958842 T
1 T
71958843 GGTGACTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.37
Consensus pattern (17 bp):
TAGAACATAGTTATGGT
Found at i:71960744 original size:10 final size:10
Alignment explanation
Indices: 71960729--71960790 Score: 61
Period size: 10 Copynumber: 6.1 Consensus size: 10
71960719 TAAATTTAGG
71960729 ATTTATTTTT
1 ATTTATTTTT
*
71960739 ATTTATCTTT
1 ATTTATTTTT
* *
71960749 AATTATCTTT
1 ATTTATTTTT
* *
71960759 AATTATATTT
1 ATTTATTTTT
*
71960769 ATTTATTTGT
1 ATTTATTTTT
71960779 ATTTATCTTTT
1 ATTTAT-TTTT
71960790 A
1 A
71960791 GAATTTAATT
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
10 40 0.91
11 4 0.09
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.68
Consensus pattern (10 bp):
ATTTATTTTT
Found at i:71960772 original size:30 final size:30
Alignment explanation
Indices: 71960731--71960788 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
71960721 AATTTAGGAT
*
71960731 TTATTTTTATTTATCTT-TAATTATCTTTAA
1 TTATATTTATTTAT-TTGTAATTATCTTTAA
*
71960761 TTATATTTATTTATTTGTATTTATCTTT
1 TTATATTTATTTATTTGTAATTATCTTT
71960789 TAGAATTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 2 0.08
30 23 0.92
ACGTcount: A:0.24, C:0.05, G:0.02, T:0.69
Consensus pattern (30 bp):
TTATATTTATTTATTTGTAATTATCTTTAA
Found at i:71964506 original size:4 final size:4
Alignment explanation
Indices: 71964497--71964597 Score: 59
Period size: 4 Copynumber: 24.8 Consensus size: 4
71964487 TTTATTTTTC
71964497 TTTA TTTA -TTA TTTTA TTTGTA TTTA -TTA TTTA -TTA TTTTA TTTTA
1 TTTA TTTA TTTA -TTTA -TT-TA TTTA TTTA TTTA TTTA -TTTA -TTTA
* * * * *
71964543 ATTA TTTA TTTA TTT- TTTA TCTTA ATAA TTTA -TTA CTTA ATTA TTTA
1 TTTA TTTA TTTA TTTA TTTA T-TTA TTTA TTTA TTTA TTTA TTTA TTTA
71964590 TTTTA TTT
1 -TTTA TTT
71964598 TGGATATTAA
Statistics
Matches: 79, Mismatches: 8, Indels: 20
0.74 0.07 0.19
Matches are distributed among these distances:
3 15 0.19
4 39 0.49
5 23 0.29
6 2 0.03
ACGTcount: A:0.27, C:0.02, G:0.01, T:0.70
Consensus pattern (4 bp):
TTTA
Found at i:71964510 original size:7 final size:7
Alignment explanation
Indices: 71964498--71964591 Score: 70
Period size: 7 Copynumber: 13.3 Consensus size: 7
71964488 TTATTTTTCT
71964498 TTATTTA
1 TTATTTA
71964505 TTA-TT-
1 TTATTTA
71964510 TTATTT-
1 TTATTTA
*
71964516 GTATTTA
1 TTATTTA
71964523 TTATTTA
1 TTATTTA
71964530 TTATTTTA
1 TTA-TTTA
*
71964538 TT-TTAA
1 TTATTTA
71964544 TTATTTA
1 TTATTTA
*
71964551 TTTATTTT
1 -TTATTTA
71964559 TTATCTTAA
1 TTAT-TT-A
*
71964568 TAATTTA
1 TTATTTA
*
71964575 TTACTTAA
1 TTA-TTTA
71964583 TTATTTA
1 TTATTTA
71964590 TT
1 TT
71964592 TTATTTTGGA
Statistics
Matches: 69, Mismatches: 10, Indels: 16
0.73 0.11 0.17
Matches are distributed among these distances:
5 3 0.04
6 14 0.20
7 27 0.39
8 22 0.32
9 3 0.04
ACGTcount: A:0.28, C:0.02, G:0.01, T:0.69
Consensus pattern (7 bp):
TTATTTA
Found at i:71964522 original size:10 final size:10
Alignment explanation
Indices: 71964477--71964559 Score: 62
Period size: 10 Copynumber: 7.9 Consensus size: 10
71964467 CAACCCAATT
* *
71964477 TTTATTTCTC
1 TTTATTTTTA
*
71964487 TTTATTTTTC
1 TTTATTTTTA
71964497 TTTATTTATTA
1 TTTATTT-TTA
*
71964508 TTTTATTTGTA
1 -TTTATTTTTA
71964519 TTTATTATTTA
1 TTTATT-TTTA
71964530 -TTA-TTTTA
1 TTTATTTTTA
71964538 TTTTAATTATTTA
1 -TTT-ATT-TTTA
71964551 TTTATTTTT
1 TTTATTTTT
71964560 TATCTTAATA
Statistics
Matches: 61, Mismatches: 4, Indels: 16
0.75 0.05 0.20
Matches are distributed among these distances:
8 4 0.07
9 1 0.02
10 30 0.49
11 11 0.18
12 11 0.18
13 4 0.07
ACGTcount: A:0.20, C:0.04, G:0.01, T:0.75
Consensus pattern (10 bp):
TTTATTTTTA
Found at i:71964532 original size:25 final size:24
Alignment explanation
Indices: 71964498--71964597 Score: 105
Period size: 25 Copynumber: 4.0 Consensus size: 24
71964488 TTATTTTTCT
71964498 TTATTTATTATTTTATTTGTATTTA
1 TTATTTATTATTTTATTT-TATTTA
*
71964523 TTATTTATTATTTTATTTTAATTA
1 TTATTTATTATTTTATTTTATTTA
71964547 TTTATTTATT-TTTTATCTTAATAATTTA
1 -TTATTTATTATTTTAT-TT--T-ATTTA
*
71964575 TTACTTAATTA-TTTATTTTATTT
1 TTA-TTTATTATTTTATTTTATTT
71964598 TGGATATTAA
Statistics
Matches: 65, Mismatches: 3, Indels: 15
0.78 0.04 0.18
Matches are distributed among these distances:
24 15 0.23
25 30 0.46
27 6 0.09
28 14 0.22
ACGTcount: A:0.27, C:0.02, G:0.01, T:0.70
Consensus pattern (24 bp):
TTATTTATTATTTTATTTTATTTA
Found at i:71964534 original size:32 final size:29
Alignment explanation
Indices: 71964476--71964559 Score: 78
Period size: 32 Copynumber: 2.7 Consensus size: 29
71964466 GCAACCCAAT
* *
71964476 TTTTATTTCTCTTTATTTTTCTTTATTTATTA
1 TTTTATTTCTATTTATTTTT-ATTA-TT-TTA
*
71964508 TTTTATTTGTATTTATTATTTATTATTTTA
1 TTTTATTTCTATTTATT-TTTATTATTTTA
*
71964538 TTTTAATTATTTATTTATTTTT
1 TTTT-ATT-TCTATTTATTTTT
71964560 TATCTTAATA
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
30 7 0.16
31 8 0.18
32 27 0.60
33 3 0.07
ACGTcount: A:0.20, C:0.04, G:0.01, T:0.75
Consensus pattern (29 bp):
TTTTATTTCTATTTATTTTTATTATTTTA
Found at i:71964560 original size:24 final size:25
Alignment explanation
Indices: 71964497--71964576 Score: 110
Period size: 25 Copynumber: 3.2 Consensus size: 25
71964487 TTTATTTTTC
*
71964497 TTTATTTATTATTTTATTTGTATTTA
1 TTTATTTATTATTTTATTT-TAATTA
71964523 -TTATTTATTATTTTATTTTAATTA
1 TTTATTTATTATTTTATTTTAATTA
* *
71964547 TTTATTTATT-TTTTATCTTAATAA
1 TTTATTTATTATTTTATTTTAATTA
71964571 TTTATT
1 TTTATT
71964577 ACTTAATTAT
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
24 23 0.46
25 27 0.54
ACGTcount: A:0.26, C:0.01, G:0.01, T:0.71
Consensus pattern (25 bp):
TTTATTTATTATTTTATTTTAATTA
Found at i:71965662 original size:96 final size:97
Alignment explanation
Indices: 71965494--71965675 Score: 287
Period size: 96 Copynumber: 1.9 Consensus size: 97
71965484 TTTAAGAATG
* * * *
71965494 TGTTGGGCTGAGTAACATGGGTGAGGTGCTTGGCTTTCATCTCTCTTCTCGTCAAAAGGTTCGAT
1 TGTTGGGCTGAGTAACATGGGTGAGGTGCTTGGCTATCATCTCTCTTCGCGTCAAAAGGTCCAAT
*
71965559 ATGTTCTTAAG-AAAAATAAAAATTAGGAGTA
66 ATATTCTTAAGTAAAAATAAAAATTAGGAGTA
*
71965590 TGTTGGGCTGAGTAAC-TGGGGTGGGGTGCTTGGCTATCATCTCTCTTCGCGTCAAAAGGTCCAA
1 TGTTGGGCTGAGTAACAT-GGGTGAGGTGCTTGGCTATCATCTCTCTTCGCGTCAAAAGGTCCAA
71965654 TATATTCTTAAGTAAAAATAAA
65 TATATTCTTAAGTAAAAATAAA
71965676 TAAATTAAAT
Statistics
Matches: 78, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
95 1 0.01
96 68 0.87
97 9 0.12
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.32
Consensus pattern (97 bp):
TGTTGGGCTGAGTAACATGGGTGAGGTGCTTGGCTATCATCTCTCTTCGCGTCAAAAGGTCCAAT
ATATTCTTAAGTAAAAATAAAAATTAGGAGTA
Found at i:71965700 original size:10 final size:10
Alignment explanation
Indices: 71965687--71965725 Score: 62
Period size: 10 Copynumber: 4.0 Consensus size: 10
71965677 AAATTAAATT
71965687 AAAAAAAAG-
1 AAAAAAAAGA
71965696 AAAAAAAAGA
1 AAAAAAAAGA
*
71965706 AAAAAAAAGG
1 AAAAAAAAGA
71965716 AAAAAAAAGA
1 AAAAAAAAGA
71965726 CATATTAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
9 9 0.33
10 18 0.67
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (10 bp):
AAAAAAAAGA
Found at i:71965710 original size:20 final size:20
Alignment explanation
Indices: 71965687--71965725 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
71965677 AAATTAAATT
71965687 AAAAAAAAGAAAAAAAAGAA
1 AAAAAAAAGAAAAAAAAGAA
*
71965707 AAAAAAAGGAAAAAAAAGA
1 AAAAAAAAGAAAAAAAAGA
71965726 CATATTAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (20 bp):
AAAAAAAAGAAAAAAAAGAA
Found at i:71966358 original size:10 final size:10
Alignment explanation
Indices: 71966343--71966386 Score: 52
Period size: 10 Copynumber: 4.4 Consensus size: 10
71966333 TAAATTTAGG
*
71966343 ATTTATTTTT
1 ATTTATCTTT
71966353 ATTTATCTTT
1 ATTTATCTTT
*
71966363 AATTATCTTT
1 ATTTATCTTT
* *
71966373 AATTATATTT
1 ATTTATCTTT
71966383 ATTT
1 ATTT
71966387 GTATTTATCT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 30 1.00
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:71972657 original size:23 final size:22
Alignment explanation
Indices: 71972627--71972679 Score: 70
Period size: 23 Copynumber: 2.4 Consensus size: 22
71972617 AAAGGCAATC
71972627 TACAAATCAAATCTCCTAAGAT
1 TACAAATCAAATCTCCTAAGAT
**
71972649 TACATAATCAAATCTTTTAAGAT
1 TACA-AATCAAATCTCCTAAGAT
*
71972672 TGCAAATC
1 TACAAATC
71972680 TTCCAAGATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
22 8 0.30
23 19 0.70
ACGTcount: A:0.43, C:0.19, G:0.06, T:0.32
Consensus pattern (22 bp):
TACAAATCAAATCTCCTAAGAT
Found at i:71973531 original size:19 final size:19
Alignment explanation
Indices: 71973507--71973549 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
71973497 AAGTGCAGGG
71973507 ATTTTCTTTTTCATTCTTT
1 ATTTTCTTTTTCATTCTTT
71973526 ATTTTCTTTTTCATTCTTT
1 ATTTTCTTTTTCATTCTTT
*
71973545 CTTTT
1 ATTTT
71973550 TTGGTTTTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.09, C:0.16, G:0.00, T:0.74
Consensus pattern (19 bp):
ATTTTCTTTTTCATTCTTT
Found at i:71981037 original size:25 final size:25
Alignment explanation
Indices: 71981009--71981060 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
71980999 AATTTGATAT
*
71981009 TTCAGCAAAGAAGGCATTGTTGAGA
1 TTCAACAAAGAAGGCATTGTTGAGA
*
71981034 TTCAACAGAGAAGGCATTGTTGAGA
1 TTCAACAAAGAAGGCATTGTTGAGA
71981059 TT
1 TT
71981061 TGCAAACTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.35, C:0.12, G:0.27, T:0.27
Consensus pattern (25 bp):
TTCAACAAAGAAGGCATTGTTGAGA
Found at i:71981375 original size:39 final size:40
Alignment explanation
Indices: 71981319--71981424 Score: 101
Period size: 44 Copynumber: 2.5 Consensus size: 40
71981309 TTTCTTTATG
*
71981319 CTATTACAATATC-ATTCCATTCAACCAAACA-CAAGAA-TA
1 CTATTACAGT-TCTATTCCATTCAACCAAACAGC-AGAATTA
*
71981358 CTATTACAGTTCTATTCCATTCCATTCAACCAAACAGCTGAATTA
1 CTATTACAGTTC---T--ATTCCATTCAACCAAACAGCAGAATTA
71981403 CTGATTACAGTTCTATTCCATT
1 CT-ATTACAGTTCTATTCCATT
71981425 AAAGCTCTAT
Statistics
Matches: 56, Mismatches: 2, Indels: 16
0.76 0.03 0.22
Matches are distributed among these distances:
38 2 0.04
39 9 0.16
41 8 0.14
43 1 0.02
44 21 0.38
45 5 0.09
46 10 0.18
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (40 bp):
CTATTACAGTTCTATTCCATTCAACCAAACAGCAGAATTA
Found at i:71981424 original size:46 final size:44
Alignment explanation
Indices: 71981331--71981424 Score: 145
Period size: 44 Copynumber: 2.1 Consensus size: 44
71981321 ATTACAATAT
71981331 CATTCCATTCAACCAAACACAAGAATACTATTACAGTTCTATTC
1 CATTCCATTCAACCAAACACAAGAATACTATTACAGTTCTATTC
*
71981375 CATTCCATTCAACCAAACAGC-TGAATTACTGATTACAGTTCTATTC
1 CATTCCATTCAACCAAACA-CAAGAA-TACT-ATTACAGTTCTATTC
71981421 CATT
1 CATT
71981425 AAAGCTCTAT
Statistics
Matches: 46, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
44 22 0.48
45 5 0.11
46 19 0.41
ACGTcount: A:0.35, C:0.27, G:0.06, T:0.32
Consensus pattern (44 bp):
CATTCCATTCAACCAAACACAAGAATACTATTACAGTTCTATTC
Found at i:71981433 original size:16 final size:16
Alignment explanation
Indices: 71981414--71981457 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
71981404 TGATTACAGT
71981414 TCTATTCCATTA-AAGC
1 TCTATTCCATTATAA-C
71981430 TCTATTCCATTATAAC
1 TCTATTCCATTATAAC
*
71981446 TCTATTCAATTA
1 TCTATTCCATTA
71981458 CAGTCTTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
16 24 0.92
17 2 0.08
ACGTcount: A:0.32, C:0.23, G:0.02, T:0.43
Consensus pattern (16 bp):
TCTATTCCATTATAAC
Found at i:71983088 original size:23 final size:24
Alignment explanation
Indices: 71983040--71983088 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
71983030 CATGAGTAAA
* * *
71983040 AAATGTTGCGAACTGTATTTATAG
1 AAATGTCGCAAACTATATTTATAG
71983064 AAATGTCGCAAACTATA-TTATAG
1 AAATGTCGCAAACTATATTTATAG
71983087 AA
1 AA
71983089 TATTGTAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 8 0.36
24 14 0.64
ACGTcount: A:0.41, C:0.10, G:0.16, T:0.33
Consensus pattern (24 bp):
AAATGTCGCAAACTATATTTATAG
Found at i:71983150 original size:23 final size:22
Alignment explanation
Indices: 71983120--71983219 Score: 85
Period size: 22 Copynumber: 4.4 Consensus size: 22
71983110 AAATGTCACA
*
71983120 AATTGTATTGTAGAATTATTGCG
1 AATTGTATTGTAGAA-TATCGCG
* **
71983143 AATTGTATTGTAGAATACCATG
1 AATTGTATTGTAGAATATCGCG
*
71983165 AACTGTATT-TACAGAATTATCGCG
1 AATTGTATTGT--AGAA-TATCGCG
* *
71983189 AATTGTATTATAGAATATTGCG
1 AATTGTATTGTAGAATATCGCG
*
71983211 AACTGTATT
1 AATTGTATT
71983220 TACATAAATG
Statistics
Matches: 62, Mismatches: 11, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
21 1 0.02
22 25 0.40
23 23 0.37
24 12 0.19
25 1 0.02
ACGTcount: A:0.34, C:0.09, G:0.18, T:0.39
Consensus pattern (22 bp):
AATTGTATTGTAGAATATCGCG
Found at i:71983190 original size:46 final size:46
Alignment explanation
Indices: 71983131--71983223 Score: 132
Period size: 46 Copynumber: 2.0 Consensus size: 46
71983121 ATTGTATTGT
* * *
71983131 AGAATTATTGCGAATTGTATTGTAGAATACCATGAACTGTATTTAC
1 AGAATTATCGCGAATTGTATTATAGAATACCACGAACTGTATTTAC
***
71983177 AGAATTATCGCGAATTGTATTATAGAATATTGCGAACTGTATTTAC
1 AGAATTATCGCGAATTGTATTATAGAATACCACGAACTGTATTTAC
71983223 A
1 A
71983224 TAAATGCTGC
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.35, C:0.11, G:0.17, T:0.37
Consensus pattern (46 bp):
AGAATTATCGCGAATTGTATTATAGAATACCACGAACTGTATTTAC
Found at i:71983217 original size:22 final size:23
Alignment explanation
Indices: 71983123--71983219 Score: 81
Period size: 23 Copynumber: 4.3 Consensus size: 23
71983113 TGTCACAAAT
* * *
71983123 TGTATTGTAGAATTATTGCGAAT
1 TGTATTATAGAATTATCGCGAAC
* * **
71983146 TGTATTGTAGAA-TACCATGAAC
1 TGTATTATAGAATTATCGCGAAC
* *
71983168 TGTATTTACAGAATTATCGCGAAT
1 TGTA-TTATAGAATTATCGCGAAC
*
71983192 TGTATTATAGAA-TATTGCGAAC
1 TGTATTATAGAATTATCGCGAAC
71983214 TGTATT
1 TGTATT
71983220 TACATAAATG
Statistics
Matches: 58, Mismatches: 14, Indels: 5
0.75 0.18 0.06
Matches are distributed among these distances:
22 23 0.40
23 25 0.43
24 10 0.17
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (23 bp):
TGTATTATAGAATTATCGCGAAC
Found at i:71983236 original size:46 final size:46
Alignment explanation
Indices: 71983131--71983241 Score: 120
Period size: 46 Copynumber: 2.4 Consensus size: 46
71983121 ATTGTATTGT
* *
71983131 AGAATTAT-TGCGAATTGTATTGTAGAATACCATGAACTGTATTTAC
1 AGAA-TATCTGCGAATTGTATTATAGAATACCACGAACTGTATTTAC
***
71983177 AGAATTATC-GCGAATTGTATTATAGAATATTGCGAACTGTATTTAC
1 AGAA-TATCTGCGAATTGTATTATAGAATACCACGAACTGTATTTAC
*
71983223 ATAA-ATGCTGCGAATTGTA
1 AGAATAT-CTGCGAATTGTA
71983242 GTCCATAAGA
Statistics
Matches: 56, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
44 2 0.04
45 1 0.02
46 53 0.95
ACGTcount: A:0.35, C:0.11, G:0.18, T:0.36
Consensus pattern (46 bp):
AGAATATCTGCGAATTGTATTATAGAATACCACGAACTGTATTTAC
Found at i:71983315 original size:54 final size:54
Alignment explanation
Indices: 71983269--71983618 Score: 380
Period size: 54 Copynumber: 6.5 Consensus size: 54
71983259 AATCTTGTAT
* * * *
71983269 GTAAAAGGTCTTGATCGTAAATCAGCGGACCATGAGATTCGTAAAATCTTGAAA
1 GTAAAAGGTCGTGATCGTAAATCAGCAGACCGTGAGATTCGTAAAATCTCGAAA
* * *
71983323 GTAAAAGGTCGTGATCGTAAATCAGCAAACCGTGAGATTCGCAAAATCTCAAAA
1 GTAAAAGGTCGTGATCGTAAATCAGCAGACCGTGAGATTCGTAAAATCTCGAAA
* * *
71983377 GTAGAAGGTCGTGATTGTAAATCAGTAGACCGTGAGATTCGTAAAATCTCGAAA
1 GTAAAAGGTCGTGATCGTAAATCAGCAGACCGTGAGATTCGTAAAATCTCGAAA
* * *
71983431 GTAAAAGGTCGTGATCATAAATCAACGGACCGTGAGATTCGTAAAATCTCGAAA
1 GTAAAAGGTCGTGATCGTAAATCAGCAGACCGTGAGATTCGTAAAATCTCGAAA
* * * * * * *
71983485 GTAGAAGGT-TTGATCATAAATCAACAGACTGTGAGATTAGTAAAATCTCAAAA
1 GTAAAAGGTCGTGATCGTAAATCAGCAGACCGTGAGATTCGTAAAATCTCGAAA
* * * * * * * * ** *
71983538 ATAGAAGGTCGTGATTGTAAATCAACGGATCATGAAATTTATAAAAT-TTGAAAA
1 GTAAAAGGTCGTGATCGTAAATCAGCAGACCGTGAGATTCGTAAAATCTCG-AAA
* *
71983592 ATAGAAGGTCGTGATCGTAAATCAGCA
1 GTAAAAGGTCGTGATCGTAAATCAGCA
71983619 TGACAACCCA
Statistics
Matches: 253, Mismatches: 41, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
53 48 0.19
54 205 0.81
ACGTcount: A:0.40, C:0.14, G:0.22, T:0.25
Consensus pattern (54 bp):
GTAAAAGGTCGTGATCGTAAATCAGCAGACCGTGAGATTCGTAAAATCTCGAAA
Found at i:71983559 original size:161 final size:162
Alignment explanation
Indices: 71983269--71983561 Score: 453
Period size: 161 Copynumber: 1.8 Consensus size: 162
71983259 AATCTTGTAT
* * * *
71983269 GTAAAAGGTCTTGATCGTAAATCAGCGGACCATGAGATTCGTAAAATCTTGAAAGTAAAAGGTCG
1 GTAAAAGGTCGTGATCATAAATCAACGGACCATGAGATTCGTAAAATCTCGAAAGTAAAAGGTCG
* * * *
71983334 TGATCGTAAATCAGCAAACCGTGAGATTCGCAAAATCTCAAAAGTAGAAGGTCGTGATTGTAAAT
66 TGATCATAAATCAACAAACCGTGAGATTAGCAAAATCTCAAAAATAGAAGGTCGTGATTGTAAAT
71983399 CAGTAGACCGTGAGATTCGTAAAATCTCGAAA
131 CAGTAGACCGTGAGATTCGTAAAATCTCGAAA
* * *
71983431 GTAAAAGGTCGTGATCATAAATCAACGGACCGTGAGATTCGTAAAATCTCGAAAGTAGAAGGT-T
1 GTAAAAGGTCGTGATCATAAATCAACGGACCATGAGATTCGTAAAATCTCGAAAGTAAAAGGTCG
* * *
71983495 TGATCATAAATCAACAGACTGTGAGATTAGTAAAATCTCAAAAATAGAAGGTCGTGATTGTAAAT
66 TGATCATAAATCAACAAACCGTGAGATTAGCAAAATCTCAAAAATAGAAGGTCGTGATTGTAAAT
71983560 CA
131 CA
71983562 ACGGATCATG
Statistics
Matches: 117, Mismatches: 14, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
161 60 0.51
162 57 0.49
ACGTcount: A:0.39, C:0.14, G:0.22, T:0.25
Consensus pattern (162 bp):
GTAAAAGGTCGTGATCATAAATCAACGGACCATGAGATTCGTAAAATCTCGAAAGTAAAAGGTCG
TGATCATAAATCAACAAACCGTGAGATTAGCAAAATCTCAAAAATAGAAGGTCGTGATTGTAAAT
CAGTAGACCGTGAGATTCGTAAAATCTCGAAA
Found at i:71983602 original size:161 final size:162
Alignment explanation
Indices: 71983270--71983615 Score: 444
Period size: 161 Copynumber: 2.1 Consensus size: 162
71983260 ATCTTGTATG
* * *
71983270 TAAAAGGTCTTGATCGTAAATCAGCGGACCATGAGATTCGTAAAATCTTGAAAGTAAAAGGTCGT
1 TAAAAGGTCGTGATCGTAAATCAACGGACCATGAGATTCGTAAAATCTCGAAAGTAAAAGGTCGT
* * * *
71983335 GATCGTAAATCAGCAAACCGTGAGATTCGCAAAATCTCAAAAGTAGAAGGTCGTGATTGTAAATC
66 GATCATAAATCAACAAACCGTGAGATTAGCAAAATCTCAAAAATAGAAGGTCGTGATTGTAAATC
** * * * *
71983400 AGTAGACCGTGAGATTCGTAAAATCTCGAAAG
131 AACAGACCATGAAATTCATAAAATCTCGAAAA
* * * *
71983432 TAAAAGGTCGTGATCATAAATCAACGGACCGTGAGATTCGTAAAATCTCGAAAGTAGAAGGT-TT
1 TAAAAGGTCGTGATCGTAAATCAACGGACCATGAGATTCGTAAAATCTCGAAAGTAAAAGGTCGT
* * *
71983496 GATCATAAATCAACAGACTGTGAGATTAGTAAAATCTCAAAAATAGAAGGTCGTGATTGTAAATC
66 GATCATAAATCAACAAACCGTGAGATTAGCAAAATCTCAAAAATAGAAGGTCGTGATTGTAAATC
* * * *
71983561 AACGGATCATGAAATTTATAAAAT-TTGAAAAA
131 AACAGACCATGAAATTCATAAAATCTCG-AAAA
*
71983593 TAGAAGGTCGTGATCGTAAATCA
1 TAAAAGGTCGTGATCGTAAATCA
71983616 GCATGACAAC
Statistics
Matches: 157, Mismatches: 26, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
160 2 0.01
161 99 0.63
162 56 0.36
ACGTcount: A:0.40, C:0.14, G:0.21, T:0.25
Consensus pattern (162 bp):
TAAAAGGTCGTGATCGTAAATCAACGGACCATGAGATTCGTAAAATCTCGAAAGTAAAAGGTCGT
GATCATAAATCAACAAACCGTGAGATTAGCAAAATCTCAAAAATAGAAGGTCGTGATTGTAAATC
AACAGACCATGAAATTCATAAAATCTCGAAAA
Found at i:71984621 original size:22 final size:23
Alignment explanation
Indices: 71984595--71984637 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
71984585 TAAAACAACC
71984595 AAGAAATGGAAA-ATAAAATTTA
1 AAGAAATGGAAAGATAAAATTTA
* *
71984617 AAGAATTGGAAAGATGAAATT
1 AAGAAATGGAAAGATAAAATT
71984638 ATGCTTCTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.58, C:0.00, G:0.19, T:0.23
Consensus pattern (23 bp):
AAGAAATGGAAAGATAAAATTTA
Found at i:72007364 original size:35 final size:35
Alignment explanation
Indices: 72007317--72007392 Score: 116
Period size: 35 Copynumber: 2.2 Consensus size: 35
72007307 AAGAAGCTAT
* *
72007317 ATTTTGTCTAACTTGACTTGCAAGTAATCTCTTAG
1 ATTTTGTCTAACTTGACTTACAAGCAATCTCTTAG
*
72007352 ATTTTGTTTAACTTGACTTACAAGCAATCTCTTAG
1 ATTTTGTCTAACTTGACTTACAAGCAATCTCTTAG
*
72007387 AATTTG
1 ATTTTG
72007393 GGTCACACAA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.28, C:0.16, G:0.13, T:0.43
Consensus pattern (35 bp):
ATTTTGTCTAACTTGACTTACAAGCAATCTCTTAG
Found at i:72008238 original size:31 final size:31
Alignment explanation
Indices: 72008200--72008263 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
72008190 GAAAAGAAAG
72008200 AAAAAAATAGAACACACAGATTTTACGTGGA
1 AAAAAAATAGAACACACAGATTTTACGTGGA
72008231 AAAAAAATAGAACACACAGATTTTACGTGGA
1 AAAAAAATAGAACACACAGATTTTACGTGGA
72008262 AA
1 AA
72008264 CCCTTTTGGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.53, C:0.12, G:0.16, T:0.19
Consensus pattern (31 bp):
AAAAAAATAGAACACACAGATTTTACGTGGA
Found at i:72010279 original size:19 final size:19
Alignment explanation
Indices: 72010255--72010292 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
72010245 AAGCTAATAA
72010255 CAAATTTGATTACGGTAGG
1 CAAATTTGATTACGGTAGG
*
72010274 CAAATTTGATTATGGTAGG
1 CAAATTTGATTACGGTAGG
72010293 TGAAAGTAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.08, G:0.26, T:0.34
Consensus pattern (19 bp):
CAAATTTGATTACGGTAGG
Found at i:72016343 original size:24 final size:23
Alignment explanation
Indices: 72016272--72016345 Score: 62
Period size: 24 Copynumber: 3.1 Consensus size: 23
72016262 AGATATTCAA
72016272 TTGATAATAGCATTCAATTTAAATT
1 TTGATAATA-CATT-AATTTAAATT
* * *
72016297 TGGATAGTA-A-TATTTTGATAATT
1 TTGATAATACATTAATTT-A-AATT
72016320 TATGATAATACATTAATTTAAATT
1 T-TGATAATACATTAATTTAAATT
72016344 TT
1 TT
72016346 TAAATATATT
Statistics
Matches: 38, Mismatches: 6, Indels: 12
0.68 0.11 0.21
Matches are distributed among these distances:
21 4 0.11
22 2 0.05
23 7 0.18
24 11 0.29
25 9 0.24
26 5 0.13
ACGTcount: A:0.39, C:0.04, G:0.09, T:0.47
Consensus pattern (23 bp):
TTGATAATACATTAATTTAAATT
Found at i:72016768 original size:19 final size:22
Alignment explanation
Indices: 72016730--72016770 Score: 61
Period size: 19 Copynumber: 2.0 Consensus size: 22
72016720 TCGAACCACC
72016730 ACATATATGAGTTATTGTTTGT
1 ACATATATGAGTTATTGTTTGT
72016752 ACATATA-G-GTT-TTGTTTGT
1 ACATATATGAGTTATTGTTTGT
72016771 TTCATTGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 8 0.42
20 3 0.16
21 1 0.05
22 7 0.37
ACGTcount: A:0.24, C:0.05, G:0.20, T:0.51
Consensus pattern (22 bp):
ACATATATGAGTTATTGTTTGT
Found at i:72017291 original size:15 final size:15
Alignment explanation
Indices: 72017271--72017322 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
72017261 ACTACAAAAC
72017271 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
72017286 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
72017305 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
72017320 ATT
1 ATT
72017323 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:72017373 original size:13 final size:13
Alignment explanation
Indices: 72017355--72017397 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
72017345 ATTTGAATAA
72017355 TATTATTTAAAAT
1 TATTATTTAAAAT
72017368 TATTATTTTTAAAATT
1 TATTA--TTTAAAA-T
72017384 TATTA-TTAAAAT
1 TATTATTTAAAAT
72017396 TA
1 TA
72017398 AATTAAATCA
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
12 3 0.11
13 11 0.41
15 7 0.26
16 6 0.22
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TATTATTTAAAAT
Found at i:72017386 original size:16 final size:16
Alignment explanation
Indices: 72017355--72017391 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
72017345 ATTTGAATAA
72017355 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
72017371 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
72017387 TATTA
1 TATTA
72017392 AAATTAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:72017443 original size:22 final size:22
Alignment explanation
Indices: 72017415--72017458 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
72017405 TCATTAAATA
72017415 ATTTATTAAAATAATAAATTAT
1 ATTTATTAAAATAATAAATTAT
* * *
72017437 ATTTATTATATTAATAATTTAT
1 ATTTATTAAAATAATAAATTAT
72017459 TATATGGCTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
ATTTATTAAAATAATAAATTAT
Found at i:72017886 original size:25 final size:25
Alignment explanation
Indices: 72017858--72017913 Score: 94
Period size: 25 Copynumber: 2.2 Consensus size: 25
72017848 TGAAGGAAGG
*
72017858 TAATTTTTTTAGGAAAAAAAACCAT
1 TAATTTTTTTAGAAAAAAAAACCAT
72017883 TAATTTTTTTAGAAAAAAAAACCAT
1 TAATTTTTTTAGAAAAAAAAACCAT
72017908 TCAATT
1 T-AATT
72017914 AAAACCAACG
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
25 25 0.86
26 4 0.14
ACGTcount: A:0.48, C:0.09, G:0.05, T:0.38
Consensus pattern (25 bp):
TAATTTTTTTAGAAAAAAAAACCAT
Found at i:72018274 original size:29 final size:28
Alignment explanation
Indices: 72018208--72018274 Score: 64
Period size: 29 Copynumber: 2.4 Consensus size: 28
72018198 TATCGAAAAT
*
72018208 TTTA-AAAAAATTATCAGATTAAGTCAG
1 TTTATAAAAAATTATCAGATTAAGTCAA
* * * *
72018235 TTTTTCGAAAAATTATGAGATTAGGTCGAA
1 TTTAT-AAAAAATTATCAGATTAAGTC-AA
72018265 TTTATAAAAA
1 TTTATAAAAA
72018275 CGCTTCTAGC
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
27 3 0.10
29 22 0.73
30 5 0.17
ACGTcount: A:0.45, C:0.06, G:0.13, T:0.36
Consensus pattern (28 bp):
TTTATAAAAAATTATCAGATTAAGTCAA
Found at i:72022558 original size:18 final size:18
Alignment explanation
Indices: 72022515--72022559 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
72022505 CGAAATCAAC
72022515 ATTGTTCAAGGGGAAGCT
1 ATTGTTCAAGGGGAAGCT
* *
72022533 ACTATTCAAGGGG-AGACT
1 ATTGTTCAAGGGGAAG-CT
72022551 ATTGTTCAA
1 ATTGTTCAA
72022560 AAGGAGATTG
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
17 2 0.09
18 20 0.91
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.29
Consensus pattern (18 bp):
ATTGTTCAAGGGGAAGCT
Found at i:72026338 original size:46 final size:45
Alignment explanation
Indices: 72026170--72026340 Score: 172
Period size: 46 Copynumber: 3.7 Consensus size: 45
72026160 CCCGCCCCTA
* *
72026170 AGTGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCAT
*
72026215 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-T
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCAT
* **
72026263 CA-CGAACTCATACTCAACTCAACGAGTTCGGACATTCGCATCCAT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
72026308 AGGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 A-GTGAACTCGGACTCAACTCAACGAGTTCGGA
72026341 TGCTCAACCA
Statistics
Matches: 103, Mismatches: 11, Indels: 22
0.76 0.08 0.16
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 3 0.03
45 3 0.03
46 55 0.53
47 27 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
Found at i:72026797 original size:30 final size:30
Alignment explanation
Indices: 72026763--72026822 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
72026753 ATTTAATACG
72026763 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* ***
72026793 AACTTTTGCTTAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
72026823 GGCTCGAGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:72032864 original size:20 final size:20
Alignment explanation
Indices: 72032836--72032878 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
72032826 TACATATAAA
* *
72032836 AAAACTTATAATTATTTTTT
1 AAAACTTATAATGAATTTTT
* *
72032856 AAAATTTATTATGAATTTTT
1 AAAACTTATAATGAATTTTT
72032876 AAA
1 AAA
72032879 GTCAGAATAG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (20 bp):
AAAACTTATAATGAATTTTT
Found at i:72033797 original size:46 final size:46
Alignment explanation
Indices: 72033730--72033899 Score: 179
Period size: 46 Copynumber: 3.7 Consensus size: 46
72033720 TAACCCGCCC
*
72033730 TAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGGCGTTCGCATCCA
* *
72033776 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC--A-GGC--GTTCGCATCCA
* * * *
72033824 TCA-CGAACTCGAACTCAACTCAACGAGTTC-GGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGG-CGTTCGCATCCA
*
72033869 TAGGTGAACTCGGACTCAACTCAACGAGTTC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC
72033900 GATGCTCAAC
Statistics
Matches: 101, Mismatches: 13, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 1 0.01
46 55 0.54
47 25 0.25
48 3 0.03
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCAGGCGTTCGCATCCA
Found at i:72033847 original size:93 final size:92
Alignment explanation
Indices: 72033735--72033904 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 92
72033725 CGCCCTAAGT
* *
72033735 GAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGAACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
72033799 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTC-GATGCCTAGTTACATCTCAC
* *
72033828 GAACTCGAACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72033893 CGAGTTCGATGC
66 CGAGTTCGATGC
72033905 TCAACCATCC
Statistics
Matches: 72, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
92 7 0.10
93 65 0.90
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (92 bp):
GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGATGCCTAGTTACATCTCAC
Found at i:72038604 original size:17 final size:17
Alignment explanation
Indices: 72038582--72038617 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
72038572 AGGATTCGGG
72038582 TCACTTAATTCTAACAA
1 TCACTTAATTCTAACAA
72038599 TCACTTAATTCTAACAA
1 TCACTTAATTCTAACAA
72038616 TC
1 TC
72038618 TCCACCGTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.39, C:0.25, G:0.00, T:0.36
Consensus pattern (17 bp):
TCACTTAATTCTAACAA
Found at i:72039467 original size:16 final size:15
Alignment explanation
Indices: 72039442--72039489 Score: 62
Period size: 16 Copynumber: 3.1 Consensus size: 15
72039432 CTATTTTAAG
72039442 TTTATTTTAATTTTA
1 TTTATTTTAATTTTA
72039457 TTTATTTTTAATTATTA
1 TTTA-TTTTAATT-TTA
72039474 -TTATTTTAGATTTTA
1 TTTATTTTA-ATTTTA
72039489 T
1 T
72039490 ATTAATTTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
15 12 0.41
16 14 0.48
17 3 0.10
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (15 bp):
TTTATTTTAATTTTA
Found at i:72040424 original size:19 final size:19
Alignment explanation
Indices: 72040376--72040417 Score: 84
Period size: 19 Copynumber: 2.2 Consensus size: 19
72040366 GTTATTTTGT
72040376 TTTTTATTTTTATTTCATC
1 TTTTTATTTTTATTTCATC
72040395 TTTTTATTTTTATTTCATC
1 TTTTTATTTTTATTTCATC
72040414 TTTT
1 TTTT
72040418 ACTTTTTTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.14, C:0.10, G:0.00, T:0.76
Consensus pattern (19 bp):
TTTTTATTTTTATTTCATC
Found at i:72041542 original size:27 final size:27
Alignment explanation
Indices: 72041503--72041558 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
72041493 CCTTTGCAAT
* *
72041503 AAGCCTTGTTTTATATCTGGGTTCTTC
1 AAGCCTTGCTTTATATCTGGGTTCATC
*
72041530 AAGCTTTGCTTTATATCTGGGTTCATC
1 AAGCCTTGCTTTATATCTGGGTTCATC
72041557 AA
1 AA
72041559 TTCTTGGAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.20, C:0.18, G:0.18, T:0.45
Consensus pattern (27 bp):
AAGCCTTGCTTTATATCTGGGTTCATC
Found at i:72047617 original size:14 final size:14
Alignment explanation
Indices: 72047598--72047645 Score: 69
Period size: 14 Copynumber: 3.4 Consensus size: 14
72047588 AAATTACATG
72047598 TTAGAATAGTATCA
1 TTAGAATAGTATCA
72047612 TTAGAATAGTATCA
1 TTAGAATAGTATCA
* * *
72047626 TTAGAAAAATATAA
1 TTAGAATAGTATCA
72047640 TTAGAA
1 TTAGAA
72047646 AAAATGTCAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 31 1.00
ACGTcount: A:0.50, C:0.04, G:0.12, T:0.33
Consensus pattern (14 bp):
TTAGAATAGTATCA
Found at i:72048899 original size:38 final size:38
Alignment explanation
Indices: 72048857--72048933 Score: 127
Period size: 38 Copynumber: 2.0 Consensus size: 38
72048847 AAAAATAACA
* *
72048857 TGCCAATAAAAAAGATAGAAAAAAAGCATAACATAAAC
1 TGCCAATAAAAAAAATAGAAAAAAAACATAACATAAAC
*
72048895 TGCCAATAAAAAAAATATAAAAAAAACATAACATAAAC
1 TGCCAATAAAAAAAATAGAAAAAAAACATAACATAAAC
72048933 T
1 T
72048934 ATCTCAACAT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.65, C:0.13, G:0.06, T:0.16
Consensus pattern (38 bp):
TGCCAATAAAAAAAATAGAAAAAAAACATAACATAAAC
Found at i:72051676 original size:27 final size:27
Alignment explanation
Indices: 72051646--72051714 Score: 84
Period size: 27 Copynumber: 2.6 Consensus size: 27
72051636 CAATATCGTA
**
72051646 GCAAAGCTGCCAGTAACAGTAAATGTG
1 GCAAAGCCACCAGTAACAGTAAATGTG
* **
72051673 GCAAAGCCACTAGTAACAGTAGTTGTG
1 GCAAAGCCACCAGTAACAGTAAATGTG
*
72051700 GCAGAGCCACCAGTA
1 GCAAAGCCACCAGTA
72051715 CATTACTTCC
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.35, C:0.22, G:0.26, T:0.17
Consensus pattern (27 bp):
GCAAAGCCACCAGTAACAGTAAATGTG
Found at i:72054657 original size:16 final size:17
Alignment explanation
Indices: 72054636--72054673 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
72054626 TTCTATATGG
*
72054636 ATTTTACT-TTTATTTT
1 ATTTTACTATGTATTTT
72054652 ATTTTACTACTGTATTTT
1 ATTTTACTA-TGTATTTT
72054670 ATTT
1 ATTT
72054674 AAATAAGGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 8 0.42
18 11 0.58
ACGTcount: A:0.21, C:0.08, G:0.03, T:0.68
Consensus pattern (17 bp):
ATTTTACTATGTATTTT
Found at i:72061290 original size:31 final size:31
Alignment explanation
Indices: 72061252--72061311 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
72061242 TTTGGGTATC
* *
72061252 AAATTAAATATTGAAGTCAAACT-TAGGTACT
1 AAATTAAACATTGAAGCCAAA-TATAGGTACT
72061283 AAATTAAACATTGAAGCCAAATATAGGTA
1 AAATTAAACATTGAAGCCAAATATAGGTA
72061312 TCAAATGGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 1 0.04
31 25 0.96
ACGTcount: A:0.48, C:0.10, G:0.13, T:0.28
Consensus pattern (31 bp):
AAATTAAACATTGAAGCCAAATATAGGTACT
Found at i:72064122 original size:17 final size:17
Alignment explanation
Indices: 72064102--72064137 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
72064092 TAAAAATCAT
72064102 TAAA-ATTATTAAAAAAA
1 TAAACATTA-TAAAAAAA
72064119 TAAACATTATAAAAAAA
1 TAAACATTATAAAAAAA
72064136 TA
1 TA
72064138 TTTTAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 14 0.78
18 4 0.22
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (17 bp):
TAAACATTATAAAAAAA
Found at i:72069956 original size:24 final size:24
Alignment explanation
Indices: 72069926--72069981 Score: 103
Period size: 24 Copynumber: 2.3 Consensus size: 24
72069916 AATATGAAAT
72069926 GTGGTATAATTAGAGTGATGGATG
1 GTGGTATAATTAGAGTGATGGATG
72069950 GTGGTATAATTAGAGTGATGGATG
1 GTGGTATAATTAGAGTGATGGATG
*
72069974 ATGGTATA
1 GTGGTATA
72069982 TTAATTTAAC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.30, C:0.00, G:0.36, T:0.34
Consensus pattern (24 bp):
GTGGTATAATTAGAGTGATGGATG
Found at i:72074186 original size:23 final size:25
Alignment explanation
Indices: 72074142--72074191 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
72074132 TTAAATTAAT
*
72074142 TTAAAAAATTATCCAAATTTATCAA
1 TTAAAAAATTATCCAAATTTATAAA
72074167 TTAAAAAATCTA-CC-AA-TTATAAA
1 TTAAAAAAT-TATCCAAATTTATAAA
72074190 TT
1 TT
72074192 CCGATTAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
23 8 0.35
24 2 0.09
25 11 0.48
26 2 0.09
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (25 bp):
TTAAAAAATTATCCAAATTTATAAA
Found at i:72077062 original size:15 final size:15
Alignment explanation
Indices: 72077042--72077073 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
72077032 AAGTAACCTG
*
72077042 ATACACTTACTTTGT
1 ATACACTTACTCTGT
72077057 ATACACTTACTCTGT
1 ATACACTTACTCTGT
72077072 AT
1 AT
72077074 CTGATTAGCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.28, C:0.22, G:0.06, T:0.44
Consensus pattern (15 bp):
ATACACTTACTCTGT
Found at i:72077997 original size:17 final size:19
Alignment explanation
Indices: 72077972--72078018 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
72077962 TAAAAAGAAC
*
72077972 AAAACAAAT-TTTTT-TTT
1 AAAAAAAATCTTTTTATTT
72077989 AAAAAAAATCTTTTTAATTT
1 AAAAAAAATCTTTTT-ATTT
72078009 AAAAATAAAT
1 AAAAA-AAAT
72078019 GTCATCTTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
17 8 0.32
18 5 0.20
20 8 0.32
21 4 0.16
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (19 bp):
AAAAAAAATCTTTTTATTT
Found at i:72086251 original size:22 final size:22
Alignment explanation
Indices: 72086226--72086281 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
72086216 TAGTAGTAAT
*
72086226 ATAATAACAAAATGACAACAAA
1 ATAACAACAAAATGACAACAAA
* * *
72086248 ATAACATCAAACTGACAGCAAA
1 ATAACAACAAAATGACAACAAA
* *
72086270 ACAACGACAAAA
1 ATAACAACAAAA
72086282 AAATTTAGCC
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.62, C:0.20, G:0.07, T:0.11
Consensus pattern (22 bp):
ATAACAACAAAATGACAACAAA
Found at i:72089834 original size:19 final size:19
Alignment explanation
Indices: 72089811--72089854 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
72089801 CTAAAATAGA
72089811 AAATTATTATTTAAATTTT
1 AAATTATTATTTAAATTTT
* * *
72089830 TAATTTTTTTTTAAATTTT
1 AAATTATTATTTAAATTTT
72089849 AAATTA
1 AAATTA
72089855 ATAAAAATAA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (19 bp):
AAATTATTATTTAAATTTT
Found at i:72093640 original size:35 final size:35
Alignment explanation
Indices: 72093590--72093658 Score: 129
Period size: 35 Copynumber: 2.0 Consensus size: 35
72093580 CTCAATTAGG
*
72093590 GATTTCATTAGTAGTATAGATGTTAATTTTCAAAA
1 GATTTCATTAATAGTATAGATGTTAATTTTCAAAA
72093625 GATTTCATTAATAGTATAGATGTTAATTTTCAAA
1 GATTTCATTAATAGTATAGATGTTAATTTTCAAA
72093659 CACAAGATTC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.38, C:0.06, G:0.13, T:0.43
Consensus pattern (35 bp):
GATTTCATTAATAGTATAGATGTTAATTTTCAAAA
Found at i:72094210 original size:17 final size:17
Alignment explanation
Indices: 72094177--72094210 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
72094167 AGTCATTTTC
*
72094177 AAATTTTTGTGAAGTCA
1 AAATTTTTATGAAGTCA
*
72094194 AAATTTTTATGAGGTCA
1 AAATTTTTATGAAGTCA
72094211 TTTTCAAATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.06, G:0.18, T:0.41
Consensus pattern (17 bp):
AAATTTTTATGAAGTCA
Found at i:72094911 original size:10 final size:10
Alignment explanation
Indices: 72094896--72094933 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
72094886 AATTTAGCAT
72094896 TTATCTTTAA
1 TTATCTTTAA
72094906 TTATCTTTAA
1 TTATCTTTAA
*
72094916 TTAT-TTGTAT
1 TTATCTT-TAA
72094926 TTATCTTT
1 TTATCTTT
72094934 TAAAATTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
9 2 0.08
10 21 0.84
11 2 0.08
ACGTcount: A:0.24, C:0.08, G:0.03, T:0.66
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:72098598 original size:46 final size:45
Alignment explanation
Indices: 72098504--72098919 Score: 466
Period size: 46 Copynumber: 9.2 Consensus size: 45
72098494 TCCCATCCAC
* * * * *
72098504 GGTCTTATTTATCTTC-GACATGATGCCATAGTATC-TTCAACTAT
1 GGTCTTATTCAT-TTCTGTCATGTTGCCATGGTATCTTTCAACCAT
72098548 GGTCTTACTT-ATTTTCTGTCATGTTGCCATGGTATCTTTCAACCAT
1 GGTCTTA-TTCA-TTTCTGTCATGTTGCCATGGTATCTTTCAACCAT
* *
72098594 GGTCTTATTCATTTCCAGTCATGTTTCCATGGTATCTTTCAACCAT
1 GGTCTTATTCATTT-CTGTCATGTTGCCATGGTATCTTTCAACCAT
* *
72098640 GGTCTTGTTCATTTCATGTTACATG--GCCATGGTATCTTTCAATCAT
1 GGTCTTATTCATTTC-TG-T-CATGTTGCCATGGTATCTTTCAACCAT
72098686 GGTCTTATTCATTT-TCGTCATGTTGCCATGGTATCTTTCAACCAT
1 GGTCTTATTCATTTCT-GTCATGTTGCCATGGTATCTTTCAACCAT
* * ** *
72098731 GGTCTTGTTCATTTCATGTTACATTGCCATGGTATCTTTCAACCAC
1 GGTCTTATTCATTTC-TGTCATGTTGCCATGGTATCTTTCAACCAT
* * *
72098777 GGTATTATTCATTTCCGTTATGTTGCCATGGTATCTTTCAACCAT
1 GGTCTTATTCATTTCTGTCATGTTGCCATGGTATCTTTCAACCAT
* * ** ** *
72098822 GGTCTTGTTCATTTCATGTTACATTGTGATGGTATCTTTCAACTAT
1 GGTCTTATTCATTTC-TGTCATGTTGCCATGGTATCTTTCAACCAT
* *
72098868 GGTCTTATTCATTTCCGTCATGTTGCCATGGTATCTTTTAACCAT
1 GGTCTTATTCATTTCTGTCATGTTGCCATGGTATCTTTCAACCAT
72098913 GGTCTTA
1 GGTCTTA
72098920 CACATTTCAT
Statistics
Matches: 317, Mismatches: 40, Indels: 29
0.82 0.10 0.08
Matches are distributed among these distances:
43 4 0.01
44 13 0.04
45 127 0.40
46 167 0.53
47 2 0.01
48 4 0.01
ACGTcount: A:0.19, C:0.21, G:0.16, T:0.44
Consensus pattern (45 bp):
GGTCTTATTCATTTCTGTCATGTTGCCATGGTATCTTTCAACCAT
Found at i:72098827 original size:182 final size:183
Alignment explanation
Indices: 72098504--72098920 Score: 601
Period size: 182 Copynumber: 2.3 Consensus size: 183
72098494 TCCCATCCAC
* * * * * *
72098504 GGTCTTATTTATCTTCGACATGATGCCATAGTATC-TTCAACTATGGTCTTACTTATTTTCTGTC
1 GGTCTTATTCATTTTCGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTACTTATTTTCTGTC
** * * *
72098568 ATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCAGTCATGTTTCCATGGTATCTTT
66 ACATTGCCATGGTATCTTTCAACCACGGTATTATTCATTTCCAGTCATGTTGCCATGGTATCTTT
72098633 CAACCATGGTCTTGTTCATTTCATGTTACATGGCCATGGTATCTTTCAA-TCAT
131 CAACCATGGTCTTGTTCATTTCATGTTACATGGCCATGGTATCTTTCAACT-AT
*
72098686 GGTCTTATTCATTTTCGTCATGTTGCCATGGTATCTTTCAACCATGGTCTT-GTTCA-TTTCATG
1 GGTCTTATTCATTTTCGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTACTT-ATTTTC-TG
* *
72098749 TTACATTGCCATGGTATCTTTCAACCACGGTATTATTCATTTCC-GTTATGTTGCCATGGTATCT
64 TCACATTGCCATGGTATCTTTCAACCACGGTATTATTCATTTCCAGTCATGTTGCCATGGTATCT
* **
72098813 TTCAACCATGGTCTTGTTCATTTCATGTTACATTGTGATGGTATCTTTCAACTAT
129 TTCAACCATGGTCTTGTTCATTTCATGTTACATGGCCATGGTATCTTTCAACTAT
* *
72098868 GGTCTTATTCATTTCCGTCATGTTGCCATGGTATCTTTTAACCATGGTCTTAC
1 GGTCTTATTCATTTTCGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTAC
72098921 ACATTTCATT
Statistics
Matches: 210, Mismatches: 20, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
182 153 0.73
183 57 0.27
ACGTcount: A:0.19, C:0.21, G:0.16, T:0.44
Consensus pattern (183 bp):
GGTCTTATTCATTTTCGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTACTTATTTTCTGTC
ACATTGCCATGGTATCTTTCAACCACGGTATTATTCATTTCCAGTCATGTTGCCATGGTATCTTT
CAACCATGGTCTTGTTCATTTCATGTTACATGGCCATGGTATCTTTCAACTAT
Found at i:72098929 original size:91 final size:91
Alignment explanation
Indices: 72098571--72098918 Score: 588
Period size: 91 Copynumber: 3.8 Consensus size: 91
72098561 TTCTGTCATG
*
72098571 TTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCAGTCATGTTTCCATGGTATCTTTCAA
1 TTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCC-GTCATGTTGCCATGGTATCTTTCAA
72098636 CCATGGTCTTGTTCATTTCATGTTACA
65 CCATGGTCTTGTTCATTTCATGTTACA
* * *
72098663 TGGCCATGGTATCTTTCAATCATGGTCTTATTCATTTTCGTCATGTTGCCATGGTATCTTTCAAC
1 TTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCGTCATGTTGCCATGGTATCTTTCAAC
72098728 CATGGTCTTGTTCATTTCATGTTACA
66 CATGGTCTTGTTCATTTCATGTTACA
* * *
72098754 TTGCCATGGTATCTTTCAACCACGGTATTATTCATTTCCGTTATGTTGCCATGGTATCTTTCAAC
1 TTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCGTCATGTTGCCATGGTATCTTTCAAC
72098819 CATGGTCTTGTTCATTTCATGTTACA
66 CATGGTCTTGTTCATTTCATGTTACA
** * *
72098845 TTGTGATGGTATCTTTCAACTATGGTCTTATTCATTTCCGTCATGTTGCCATGGTATCTTTTAAC
1 TTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCGTCATGTTGCCATGGTATCTTTCAAC
72098910 CATGGTCTT
66 CATGGTCTT
72098919 ACACATTTCA
Statistics
Matches: 239, Mismatches: 17, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
91 203 0.85
92 36 0.15
ACGTcount: A:0.19, C:0.21, G:0.16, T:0.44
Consensus pattern (91 bp):
TTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCGTCATGTTGCCATGGTATCTTTCAAC
CATGGTCTTGTTCATTTCATGTTACA
Found at i:72101035 original size:11 final size:11
Alignment explanation
Indices: 72101019--72101066 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
72101009 CTTTATATAC
72101019 TAATAAAATAA
1 TAATAAAATAA
*
72101030 TAATAAAATATCT
1 TAATAAAATA--A
* *
72101043 TATTAAAATAT
1 TAATAAAATAA
72101054 TAATAAAATAA
1 TAATAAAATAA
72101065 TA
1 TA
72101067 TTTATCTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 22 0.71
13 9 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:72108371 original size:19 final size:19
Alignment explanation
Indices: 72108335--72108373 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
72108325 TTTTCATCAT
* *
72108335 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
72108354 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
72108373 A
1 A
72108374 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:72108887 original size:27 final size:27
Alignment explanation
Indices: 72108836--72108925 Score: 101
Period size: 27 Copynumber: 3.2 Consensus size: 27
72108826 GTGACAGAGT
*
72108836 CACCAGATACAGATATTCTGTGGCAGTGC
1 CACCAGA-ACAGATA-TATGTGGCAGTGC
* *
72108865 CACCAGAACAAATATATGTGGCAGGGC
1 CACCAGAACAGATATATGTGGCAGTGC
*
72108892 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATATGTGGCAGT-GC
72108920 CACCAG
1 CACCAG
72108926 GATGCTTCCT
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
27 23 0.43
28 23 0.43
29 7 0.13
ACGTcount: A:0.33, C:0.24, G:0.23, T:0.19
Consensus pattern (27 bp):
CACCAGAACAGATATATGTGGCAGTGC
Found at i:72108921 original size:28 final size:26
Alignment explanation
Indices: 72108836--72108925 Score: 99
Period size: 28 Copynumber: 3.2 Consensus size: 26
72108826 GTGACAGAGT
72108836 CACCAGATACAGATATTCTGTGGCAGTGC
1 CACCAGA-ACAGATATT-TGTGGCA-TGC
* * *
72108865 CACCAGAACAAATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCA-TGC
72108892 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGAT-ATTTGTGGCAT-GC
72108920 CACCAG
1 CACCAG
72108926 GATGCTTCCT
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
27 22 0.42
28 24 0.45
29 7 0.13
ACGTcount: A:0.33, C:0.24, G:0.23, T:0.19
Consensus pattern (26 bp):
CACCAGAACAGATATTTGTGGCATGC
Found at i:72109078 original size:28 final size:28
Alignment explanation
Indices: 72109031--72109095 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
72109021 AAATTAACCC
*
72109031 TAGGGGTATAAAGGTCATTTAGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
* * *
72109059 TAGGGGTATAATGGTAATTTTGCATACG
1 TAGGGGTATAAAGGTAATTTAGCATACA
72109087 TAGGGGTAT
1 TAGGGGTAT
72109096 TCTAGTAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.31, C:0.08, G:0.29, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTAGCATACA
Found at i:72110182 original size:12 final size:13
Alignment explanation
Indices: 72110163--72110195 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
72110153 GGGTTCGGCT
72110163 ATGGAGAAGGAAG
1 ATGGAGAAGGAAG
*
72110176 A-GGAGAAGGTAG
1 ATGGAGAAGGAAG
72110188 ATGGAGAA
1 ATGGAGAA
72110196 AAAGAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.09
Consensus pattern (13 bp):
ATGGAGAAGGAAG
Found at i:72111220 original size:23 final size:23
Alignment explanation
Indices: 72111190--72111233 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
72111180 GACCGTCAAC
72111190 CTTCCCTCCACAATTCAAGCAAA
1 CTTCCCTCCACAATTCAAGCAAA
* *
72111213 CTTCCCTCTACATTTCAAGCA
1 CTTCCCTCCACAATTCAAGCA
72111234 CTTTCTCTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.30, C:0.39, G:0.05, T:0.27
Consensus pattern (23 bp):
CTTCCCTCCACAATTCAAGCAAA
Found at i:72116626 original size:24 final size:24
Alignment explanation
Indices: 72116592--72116676 Score: 84
Period size: 24 Copynumber: 3.5 Consensus size: 24
72116582 TGGGCTGTAT
*
72116592 ATCGAGAAGCTCATAAGAGCCATA
1 ATCGGGAAGCTCATAAGAGCCATA
* **
72116616 ATCAGGAAGCTCATTTGAGCCAATA
1 ATCGGGAAGCTCATAAGAGCC-ATA
*
72116641 A-CGGGTAGCTC-TGAAGAGCCATTA
1 ATCGGGAAGCTCAT-AAGAGCCA-TA
72116665 ATCGGGAAGCTC
1 ATCGGGAAGCTC
72116677 CGGATAGCCA
Statistics
Matches: 48, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
23 2 0.04
24 33 0.69
25 13 0.27
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.20
Consensus pattern (24 bp):
ATCGGGAAGCTCATAAGAGCCATA
Found at i:72116899 original size:25 final size:25
Alignment explanation
Indices: 72116843--72116905 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 25
72116833 GAAGAGCTAT
*
72116843 TAACGGGAAGCTCGAAAGAACCATA
1 TAACGGGAAGCTCGAAAGAACCAAA
* **
72116868 TAACGGGAAGCTCGAGAGGGCCAAA
1 TAACGGGAAGCTCGAAAGAACCAAA
* *
72116893 TATCGGGATGCTC
1 TAACGGGAAGCTC
72116906 ATGAGAGCTA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.35, C:0.21, G:0.30, T:0.14
Consensus pattern (25 bp):
TAACGGGAAGCTCGAAAGAACCAAA
Found at i:72117522 original size:19 final size:19
Alignment explanation
Indices: 72117500--72117538 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
72117490 TTAGTTTTTA
72117500 TAGAAAACCCATGGTTTGT
1 TAGAAAACCCATGGTTTGT
72117519 TAGAAAACCCATGGTTTGT
1 TAGAAAACCCATGGTTTGT
72117538 T
1 T
72117539 GAGTTGTAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33
Consensus pattern (19 bp):
TAGAAAACCCATGGTTTGT
Found at i:72118400 original size:17 final size:18
Alignment explanation
Indices: 72118367--72118401 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
72118357 ATGTGGCCTA
*
72118367 CCTGTGTGGGCCTACACG
1 CCTGTGTGGGCCCACACG
72118385 CCTGTGT-GGCCCACACG
1 CCTGTGTGGGCCCACACG
72118402 GCCCAAATTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.11, C:0.37, G:0.31, T:0.20
Consensus pattern (18 bp):
CCTGTGTGGGCCCACACG
Found at i:72119177 original size:8 final size:8
Alignment explanation
Indices: 72119164--72119188 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
72119154 CCCCTTTTCT
72119164 CCCACTAA
1 CCCACTAA
72119172 CCCACTAA
1 CCCACTAA
72119180 CCCACTAA
1 CCCACTAA
72119188 C
1 C
72119189 ACACACAATC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.36, C:0.52, G:0.00, T:0.12
Consensus pattern (8 bp):
CCCACTAA
Found at i:72120082 original size:13 final size:13
Alignment explanation
Indices: 72120066--72120093 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
72120056 TTTTCTTTTA
72120066 TTATTTTTCATCT
1 TTATTTTTCATCT
72120079 TTATTTTTCATCT
1 TTATTTTTCATCT
72120092 TT
1 TT
72120094 CCAATTTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.71
Consensus pattern (13 bp):
TTATTTTTCATCT
Found at i:72126186 original size:17 final size:19
Alignment explanation
Indices: 72126164--72126202 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
72126154 CAGTAGAATA
72126164 AGAAG-AGAAAAAAAAA-G
1 AGAAGAAGAAAAAAAAATG
72126181 AGAAGAAGAAAAAAAAATG
1 AGAAGAAGAAAAAAAAATG
72126200 AGA
1 AGA
72126203 TGCATGGAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 5 0.25
18 11 0.55
19 4 0.20
ACGTcount: A:0.74, C:0.00, G:0.23, T:0.03
Consensus pattern (19 bp):
AGAAGAAGAAAAAAAAATG
Found at i:72126188 original size:20 final size:19
Alignment explanation
Indices: 72126163--72126202 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
72126153 ACAGTAGAAT
72126163 AAGAAGAGAAAAAAAAAGAG
1 AAGAAGA-AAAAAAAAAGAG
*
72126183 AAGAAGAAAAAAAAATGAG
1 AAGAAGAAAAAAAAAAGAG
72126202 A
1 A
72126203 TGCATGGAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.75, C:0.00, G:0.23, T:0.03
Consensus pattern (19 bp):
AAGAAGAAAAAAAAAAGAG
Found at i:72136071 original size:21 final size:21
Alignment explanation
Indices: 72136047--72136097 Score: 50
Period size: 22 Copynumber: 2.4 Consensus size: 21
72136037 TTAATTTGTG
72136047 TATTGTTTTAAGAATTATTTT
1 TATTGTTTTAAGAATTATTTT
* * * *
72136068 TATTTATTTTAATATTTGTTTT
1 TA-TTGTTTTAAGAATTATTTT
72136090 TA-TGTTTT
1 TATTGTTTT
72136098 TAAATATATT
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
20 5 0.21
21 2 0.08
22 17 0.71
ACGTcount: A:0.24, C:0.00, G:0.08, T:0.69
Consensus pattern (21 bp):
TATTGTTTTAAGAATTATTTT
Found at i:72136118 original size:26 final size:24
Alignment explanation
Indices: 72136079--72136126 Score: 69
Period size: 26 Copynumber: 1.9 Consensus size: 24
72136069 ATTTATTTTA
*
72136079 ATATTTGTTTTTATGTTTTTAAAT
1 ATATTTGTTTTTATATTTTTAAAT
72136103 ATATTTGATTTATTATATTTTTAA
1 ATATTTG-TTT-TTATATTTTTAA
72136127 TTTTTTTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.33
25 3 0.14
26 11 0.52
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (24 bp):
ATATTTGTTTTTATATTTTTAAAT
Found at i:72136131 original size:41 final size:40
Alignment explanation
Indices: 72135972--72136131 Score: 101
Period size: 44 Copynumber: 3.8 Consensus size: 40
72135962 ATTATATATT
* * **
72135972 AATATATAT-TTTATTTTATTTTTAATCATTTTAAATTTTTA
1 AATATATTTATTTATTATATTTTTAAT--TTTTATGTTTTTA
* *
72136013 ATATAATTATTT-TTTATTATATTGTTAATTTGTGTATTGTTTTAA
1 A-AT-A-TATTTATTTATTATATTTTTAATTT-T-TA-TGTTTTTA
* * * *
72136058 GAATTATTTTTATTTATTTTAATATTT-GTTTTTATGTTTTTA
1 -AA-TATATTTATTTATTAT-ATTTTTAATTTTTATGTTTTTA
72136100 AATATATTTGATTTATTATATTTTTAATTTTT
1 AATATATTT-ATTTATTATATTTTTAATTTTT
72136132 TTTATTTAAT
Statistics
Matches: 91, Mismatches: 16, Indels: 24
0.69 0.12 0.18
Matches are distributed among these distances:
40 11 0.12
41 16 0.18
42 11 0.12
43 4 0.04
44 26 0.29
45 17 0.19
46 6 0.07
ACGTcount: A:0.29, C:0.01, G:0.05, T:0.65
Consensus pattern (40 bp):
AATATATTTATTTATTATATTTTTAATTTTTATGTTTTTA
Found at i:72136410 original size:20 final size:20
Alignment explanation
Indices: 72136361--72136409 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
72136351 CTGTACCTAG
72136361 GAAAAATTTTGAAATTTTGC
1 GAAAAATTTTGAAATTTTGC
*
72136381 AAAAAATTTTGAAATTTTGC
1 GAAAAATTTTGAAATTTTGC
72136401 G-AAAATTTT
1 GAAAAATTTT
72136410 TTTAAGTTCC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 8 0.30
20 19 0.70
ACGTcount: A:0.43, C:0.04, G:0.12, T:0.41
Consensus pattern (20 bp):
GAAAAATTTTGAAATTTTGC
Found at i:72136921 original size:3 final size:3
Alignment explanation
Indices: 72136913--72136981 Score: 70
Period size: 3 Copynumber: 23.3 Consensus size: 3
72136903 TCTCCATTTT
* *
72136913 TTC TTC TTC TCC TTC -TC GTTC TTC TTT TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC -TTC TTC TTC TTC TTC TTC TTC TTC TTC
* * *
72136958 TTT TTC TTT TTC -TC TTC TTA TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC T
72136982 ACTACATAAA
Statistics
Matches: 53, Mismatches: 10, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
2 4 0.08
3 47 0.89
4 2 0.04
ACGTcount: A:0.01, C:0.29, G:0.01, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:72140165 original size:19 final size:19
Alignment explanation
Indices: 72140141--72140204 Score: 71
Period size: 18 Copynumber: 3.5 Consensus size: 19
72140131 GAAACTAAAG
72140141 AAAAATCATTAAAA-TTCAA
1 AAAAATCATTAAAACTT-AA
72140160 AAAAATCATTAAAACTT-A
1 AAAAATCATTAAAACTTAA
* *
72140178 AAAAATTATAAAAAC-TAA
1 AAAAATCATTAAAACTTAA
*
72140196 AAGAATCAT
1 AAAAATCAT
72140205 AATCTGTATT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
17 1 0.03
18 22 0.56
19 14 0.36
20 2 0.05
ACGTcount: A:0.64, C:0.09, G:0.02, T:0.25
Consensus pattern (19 bp):
AAAAATCATTAAAACTTAA
Found at i:72140430 original size:17 final size:18
Alignment explanation
Indices: 72140396--72140433 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
72140386 TAAATATAGA
* *
72140396 TTATAATTTTTTTTAGTT
1 TTATAATTTTTCTAAGTT
72140414 TTATAA-TTTTCTAAGTT
1 TTATAATTTTTCTAAGTT
72140431 TTA
1 TTA
72140434 GTATTTTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.26, C:0.03, G:0.05, T:0.66
Consensus pattern (18 bp):
TTATAATTTTTCTAAGTT
Found at i:72140928 original size:11 final size:11
Alignment explanation
Indices: 72140914--72140965 Score: 72
Period size: 11 Copynumber: 4.9 Consensus size: 11
72140904 TCTTTCAATA
72140914 TTCTCTCAAAT
1 TTCTCTCAAAT
72140925 TTCTCTCAAA-
1 TTCTCTCAAAT
72140935 -TCTCTCAAAT
1 TTCTCTCAAAT
*
72140945 TTCTCTTAAAT
1 TTCTCTCAAAT
*
72140956 TCCTCTCAAA
1 TTCTCTCAAA
72140966 ACTCTCGTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
9 9 0.25
11 27 0.75
ACGTcount: A:0.29, C:0.29, G:0.00, T:0.42
Consensus pattern (11 bp):
TTCTCTCAAAT
Found at i:72140940 original size:20 final size:21
Alignment explanation
Indices: 72140908--72140965 Score: 82
Period size: 20 Copynumber: 2.7 Consensus size: 21
72140898 CTTCAATCTT
72140908 TCAATATTCTCTCAAATTTCTC
1 TCAA-ATTCTCTCAAATTTCTC
72140930 TCAAA-TCTCTCAAATTTCTC
1 TCAAATTCTCTCAAATTTCTC
*
72140950 TTAAATTCCTCTCAAA
1 TCAAATT-CTCTCAAA
72140966 ACTCTCGTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
20 19 0.58
21 2 0.06
22 12 0.36
ACGTcount: A:0.31, C:0.28, G:0.00, T:0.41
Consensus pattern (21 bp):
TCAAATTCTCTCAAATTTCTC
Found at i:72141021 original size:16 final size:15
Alignment explanation
Indices: 72140992--72141022 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
72140982 TCAAAAAAGC
*
72140992 TCTAATTTTATTTTT
1 TCTAAATTTATTTTT
72141007 TCTAAATTTATTTTT
1 TCTAAATTTATTTTT
72141022 T
1 T
72141023 AAAATAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.71
Consensus pattern (15 bp):
TCTAAATTTATTTTT
Found at i:72142684 original size:30 final size:30
Alignment explanation
Indices: 72142641--72142711 Score: 83
Period size: 30 Copynumber: 2.4 Consensus size: 30
72142631 GATGACGACG
*
72142641 CAGGCCCATCAACAGTG-CCCACACAATCACC
1 CAGGCCCAACAACAG-GACCCACACAATCA-C
* *
72142672 CA-GCCCAACAACAGGACCTACACAGTCAC
1 CAGGCCCAACAACAGGACCCACACAATCAC
72142701 CAGGCCCAACA
1 CAGGCCCAACA
72142712 GTTCAACCGT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
29 4 0.11
30 29 0.83
31 2 0.06
ACGTcount: A:0.35, C:0.44, G:0.14, T:0.07
Consensus pattern (30 bp):
CAGGCCCAACAACAGGACCCACACAATCAC
Found at i:72142785 original size:18 final size:18
Alignment explanation
Indices: 72142762--72142804 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
72142752 TGCCAGGTAC
*
72142762 GTATCCTAGCCCTTTTAT
1 GTATCCTAGCCCTTATAT
72142780 GTATCCTAGCCCTTATAT
1 GTATCCTAGCCCTTATAT
*
72142798 GTTTCCT
1 GTATCCT
72142805 TTTTCTAGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.16, C:0.28, G:0.12, T:0.44
Consensus pattern (18 bp):
GTATCCTAGCCCTTATAT
Found at i:72143742 original size:115 final size:116
Alignment explanation
Indices: 72143188--72144031 Score: 1496
Period size: 116 Copynumber: 7.3 Consensus size: 116
72143178 TATTTGTACA
*
72143188 AACATTTTGAATCTTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
72143253 TGTAATTTACTTTTATA-TTTTAATAAAATGGAAATTATTTTAAATAAGGC
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
72143303 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
*
72143368 TATAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
* *
72143419 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGATTGTTCTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
* *
72143484 TGTAATCTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGAC
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
72143535 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
* *
72143600 TGTAATCTACTTTTATATTTTTAATAAAATAGAAATTATTTTAAATAAGGC
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
72143651 AACATTTTGAATA-TTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
*
72143715 TGTAATCTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
72143766 AACATTTTGAAT-TTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
*
72143830 TGTAATTTACTTTTATATTTTTAATAAAATAGAAATTATTTTAAATAAGGC
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
* * * *
72143881 AACATTTTGAATATTTTTATATTATTTCATGTGATAATATAAAATGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
* * * *
72143946 TATAATTTACTTTTATATTTTTAATAAAATGAAAATTATTTTAACTAAAGC
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
*
72143997 AATATTTTGAATATTTTTATATTATTTCATGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAAT
72144032 AAAATATAAA
Statistics
Matches: 701, Mismatches: 25, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
115 305 0.44
116 396 0.56
ACGTcount: A:0.40, C:0.04, G:0.09, T:0.47
Consensus pattern (116 bp):
AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
Found at i:72147578 original size:126 final size:126
Alignment explanation
Indices: 72147047--72147570 Score: 816
Period size: 126 Copynumber: 4.2 Consensus size: 126
72147037 GAAACCACTA
72147047 TAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCCTGCTTGAA
1 TAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCCTGCTTGAA
* ** * *
72147112 GCGTTTTTGATACTATTTATGCAGACACGTCTTCTCAAAATTATTTTTTTAGAGACCACTG
66 GCGTTTTTGACACTATTTGCGCAGACACGTCTTCTCAAAATTATTTTTTCAGAGACTACTG
* * * * *
72147173 TAGCAAAAGAGCATCCACATGGGAGCTTCTTCCAGTAATTTTGCTGAAAATGCATCCTACTTGAA
1 TAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCCTGCTTGAA
*
72147238 GCGTTTTT-ACCACTATTTGCGCAGACACGTCTTCTTAAAATTATTTTTTCAGAGACTACTG
66 GCGTTTTTGA-CACTATTTGCGCAGACACGTCTTCTCAAAATTATTTTTTCAGAGACTACTG
* * *
72147299 TAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGTTGACAATGCATCCTGCTTGAA
1 TAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCCTGCTTGAA
* * * * * *
72147364 GCATTTTTTACACTATTTGCACAAACACGTCTTCTCAAAATTATTTTTTCAAATACTACTG
66 GCGTTTTTGACACTATTTGCGCAGACACGTCTTCTCAAAATTATTTTTTCAGAGACTACTG
*
72147425 TAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAATGCATCCTGCTTGAA
1 TAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCCTGCTTGAA
*
72147490 GCGTTTTTGACACTATTTGCGCAGACACGTCTTCTCAAATTTATTTTTTCAGAGACTACTG
66 GCGTTTTTGACACTATTTGCGCAGACACGTCTTCTCAAAATTATTTTTTCAGAGACTACTG
* *
72147551 TAGTAAAAAAGCGTCCACGT
1 TAGCAAAAGAGCGTCCACGT
72147571 AGAAGCTTTT
Statistics
Matches: 360, Mismatches: 36, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
125 1 0.00
126 358 0.99
127 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (126 bp):
TAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCCTGCTTGAA
GCGTTTTTGACACTATTTGCGCAGACACGTCTTCTCAAAATTATTTTTTCAGAGACTACTG
Found at i:72147857 original size:96 final size:97
Alignment explanation
Indices: 72147655--72147863 Score: 273
Period size: 96 Copynumber: 2.2 Consensus size: 97
72147645 TTCTTAAATA
* * *
72147655 CCTTAAAACCCTAAACCCTAAAATCCTAATCTATTTTTTTTAAAATTTATAATTAATTTACTCAA
1 CCTTAAAACCCTAAACACTAAAATCCTAATCTATATTTTTTAAAATTTATAATTAATTTAATCAA
** * *
72147720 GTAACCCTAAACCCTAATTTATTTGATTTTTT
66 CAAACACTAAACCCTAATTTATTTAATTTTTT
*
72147752 CCTTAAAAACCATAAACACT-AAA-CCATAATCTA-ATTTTTTAAAA-TTAGTAATTAATTTAAT
1 CCTT-AAAACCCTAAACACTAAAATCC-TAATCTATATTTTTTAAAATTTA-TAATTAATTTAAT
*
72147813 TAACAAACACTAAACCCTAATTTATTTAATTTTTTT
63 CAACAAACACTAAACCCTAATTTATTTAA-TTTTTT
72147849 CCTTAAAACCCTAAA
1 CCTTAAAACCCTAAA
72147864 ATTAAAAAAT
Statistics
Matches: 98, Mismatches: 10, Indels: 9
0.84 0.09 0.08
Matches are distributed among these distances:
95 3 0.03
96 58 0.59
97 24 0.24
98 13 0.13
ACGTcount: A:0.41, C:0.19, G:0.01, T:0.39
Consensus pattern (97 bp):
CCTTAAAACCCTAAACACTAAAATCCTAATCTATATTTTTTAAAATTTATAATTAATTTAATCAA
CAAACACTAAACCCTAATTTATTTAATTTTTT
Found at i:72164504 original size:23 final size:23
Alignment explanation
Indices: 72164473--72164527 Score: 101
Period size: 23 Copynumber: 2.3 Consensus size: 23
72164463 GTGATTAAAT
72164473 AATTGAAGTTCAAAATGAAAATTA
1 AATT-AAGTTCAAAATGAAAATTA
72164497 AATTAAGTTCAAAATGAAAATTA
1 AATTAAGTTCAAAATGAAAATTA
72164520 AATTAAGT
1 AATTAAGT
72164528 CATCATAGTT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
23 27 0.87
24 4 0.13
ACGTcount: A:0.55, C:0.04, G:0.11, T:0.31
Consensus pattern (23 bp):
AATTAAGTTCAAAATGAAAATTA
Found at i:72166763 original size:12 final size:12
Alignment explanation
Indices: 72166746--72166772 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
72166736 TTCTGTTCTT
72166746 CTTTGGATGATG
1 CTTTGGATGATG
72166758 CTTTGGATGATG
1 CTTTGGATGATG
72166770 CTT
1 CTT
72166773 GGTAAGCTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.11, G:0.30, T:0.44
Consensus pattern (12 bp):
CTTTGGATGATG
Done.