Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 216 of 255
Found at i:72167583 original size:69 final size:69
Alignment explanation
Indices: 72167484--72167680 Score: 243
Period size: 69 Copynumber: 2.8 Consensus size: 69
72167474 AAAAATGTAG
* * * *
72167484 AAGACCATAGTTGGACCATGGCAAA-GTTTACGTAAGACCATAATTGGGCTATGGCAATTTTTTA
1 AAGACCATGGTTGGACCATGG-AAATATTTACGTAAGACCATAGTTGGGCTATGGCAATTTTTCA
72167548 TACGC
65 TACGC
* *
72167553 AAGAACATGGTTGGACCATGGAAATATTTACGTAAGACCATAGCTGGGCTATGGCAATTTTTCAT
1 AAGACCATGGTTGGACCATGGAAATATTTACGTAAGACCATAGTTGGGCTATGGCAATTTTTCAT
*
72167618 ACGT
66 ACGC
* *
72167622 AAGACCATGGTTGGAACATGGAAGTGTATATATATATGTAAGACCATAGTTGGGCTATG
1 AAGACCATGGTTGGACCATGGAA----ATAT-T-TACGTAAGACCATAGTTGGGCTATG
72167681 TCATTCTAAT
Statistics
Matches: 110, Mismatches: 11, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
68 3 0.03
69 79 0.72
73 4 0.04
74 1 0.01
75 23 0.21
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (69 bp):
AAGACCATGGTTGGACCATGGAAATATTTACGTAAGACCATAGTTGGGCTATGGCAATTTTTCAT
ACGC
Found at i:72167628 original size:36 final size:35
Alignment explanation
Indices: 72167484--72167680 Score: 136
Period size: 36 Copynumber: 5.6 Consensus size: 35
72167474 AAAAATGTAG
* * **
72167484 AAGACCATAGTTGGACCATGGCAA-AGTT-TACGT
1 AAGACCATAGTTGGGCTATGGCAATTTTTATACGT
* *
72167517 AAGACCATAATTGGGCTATGGCAATTTTTTATACGC
1 AAGACCATAGTTGGGCTATGGCAA-TTTTTATACGT
* * * * * *
72167553 AAGAACATGGTTGGACCATGG-AAATATT-TACGT
1 AAGACCATAGTTGGGCTATGGCAATTTTTATACGT
*
72167586 AAGACCATAGCTGGGCTATGGCAATTTTTCATACGT
1 AAGACCATAGTTGGGCTATGGCAATTTTT-ATACGT
* * *
72167622 AAGACCATGGTTGGAAC-ATGG-AAGTGTATATATATATGT
1 AAGACCATAGTTGG-GCTATGGCAA-T-T-T-T-TATACGT
72167661 AAGACCATAGTTGGGCTATG
1 AAGACCATAGTTGGGCTATG
72167681 TCATTCTAAT
Statistics
Matches: 124, Mismatches: 27, Indels: 20
0.73 0.16 0.12
Matches are distributed among these distances:
33 41 0.33
34 8 0.06
35 6 0.05
36 42 0.34
37 2 0.02
38 2 0.02
39 22 0.18
40 1 0.01
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (35 bp):
AAGACCATAGTTGGGCTATGGCAATTTTTATACGT
Found at i:72169400 original size:22 final size:22
Alignment explanation
Indices: 72169372--72169424 Score: 97
Period size: 22 Copynumber: 2.4 Consensus size: 22
72169362 AAATGATAAG
*
72169372 TTTTAGCATGTATGCATGTAAC
1 TTTTAGCATGTATGCACGTAAC
72169394 TTTTAGCATGTATGCACGTAAC
1 TTTTAGCATGTATGCACGTAAC
72169416 TTTTAGCAT
1 TTTTAGCAT
72169425 ATTAAACTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.26, C:0.15, G:0.17, T:0.42
Consensus pattern (22 bp):
TTTTAGCATGTATGCACGTAAC
Found at i:72175529 original size:42 final size:42
Alignment explanation
Indices: 72175476--72175573 Score: 142
Period size: 42 Copynumber: 2.3 Consensus size: 42
72175466 CACGACCAAA
* * *
72175476 ACACACGCCCGTGTTCCAGGCCGTGTGGCACATACGACTGAG
1 ACACACGCCCGTGTTCCAAGCCATGTGGCACACACGACTGAG
* *
72175518 ACACACCCCCGTGTTCCAAGCTATGTGGCACACACGACTGAG
1 ACACACGCCCGTGTTCCAAGCCATGTGGCACACACGACTGAG
*
72175560 ACACATGCCCGTGT
1 ACACACGCCCGTGT
72175574 CTCTGCCCAT
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.23, C:0.35, G:0.24, T:0.17
Consensus pattern (42 bp):
ACACACGCCCGTGTTCCAAGCCATGTGGCACACACGACTGAG
Found at i:72176667 original size:20 final size:21
Alignment explanation
Indices: 72176633--72176673 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
72176623 GCAGGGGAAG
72176633 GAAAGAAAGAAAAAGAGAAAA
1 GAAAGAAAGAAAAAGAGAAAA
*
72176654 GAAAGAAA-AAAAAGGGAAAA
1 GAAAGAAAGAAAAAGAGAAAA
72176674 TCAAAGATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (21 bp):
GAAAGAAAGAAAAAGAGAAAA
Found at i:72176679 original size:21 final size:21
Alignment explanation
Indices: 72176634--72176680 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
72176624 CAGGGGAAGG
*
72176634 AAAGAAAGAAAAAGAGAAAAG
1 AAAGAAAGAAAAAGAGAAAAC
*
72176655 AAAGAAA-AAAAAGGGAAAATC
1 AAAGAAAGAAAAAGAGAAAA-C
72176676 AAAGA
1 AAAGA
72176681 TGTAAAGCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 11 0.48
21 12 0.52
ACGTcount: A:0.74, C:0.02, G:0.21, T:0.02
Consensus pattern (21 bp):
AAAGAAAGAAAAAGAGAAAAC
Found at i:72176761 original size:40 final size:40
Alignment explanation
Indices: 72176706--72176788 Score: 166
Period size: 40 Copynumber: 2.1 Consensus size: 40
72176696 TTTAATAGGT
72176706 AAGTCAATTGAGCCCTTTTTACTTAATTTTGATATTTTAG
1 AAGTCAATTGAGCCCTTTTTACTTAATTTTGATATTTTAG
72176746 AAGTCAATTGAGCCCTTTTTACTTAATTTTGATATTTTAG
1 AAGTCAATTGAGCCCTTTTTACTTAATTTTGATATTTTAG
72176786 AAG
1 AAG
72176789 CTTTGGACAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.29, C:0.12, G:0.13, T:0.46
Consensus pattern (40 bp):
AAGTCAATTGAGCCCTTTTTACTTAATTTTGATATTTTAG
Found at i:72178640 original size:46 final size:46
Alignment explanation
Indices: 72178589--72178816 Score: 305
Period size: 46 Copynumber: 5.0 Consensus size: 46
72178579 AGTGTGCTCT
*
72178589 CTGATATGAAATGTGTAAGATCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
72178635 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
72178681 CTGATATGAAATGTGTATGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * ** *
72178727 GTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGTAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
72178773 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
72178817 TCATGTCAAA
Statistics
Matches: 165, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 1 0.01
46 164 0.99
ACGTcount: A:0.38, C:0.14, G:0.25, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:72190619 original size:22 final size:23
Alignment explanation
Indices: 72190593--72190638 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
72190583 CAACCAAACC
72190593 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
72190615 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
72190638 A
1 A
72190639 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:72190644 original size:23 final size:23
Alignment explanation
Indices: 72190600--72190644 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
72190590 ACCAATTCAA
*
72190600 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
72190623 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
72190645 CACATACCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:72207312 original size:21 final size:20
Alignment explanation
Indices: 72207288--72207335 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 20
72207278 ATAAACATTC
*
72207288 TATTATTTTAATAAGATTTAA
1 TATTAATTTAATAA-ATTTAA
*
72207309 TATTTAATTTAATTAATTTAA
1 TA-TTAATTTAATAAATTTAA
72207330 TATTAA
1 TATTAA
72207336 AGTGATTGAG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 4 0.17
21 10 0.42
22 10 0.42
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (20 bp):
TATTAATTTAATAAATTTAA
Found at i:72209504 original size:43 final size:43
Alignment explanation
Indices: 72209335--72209505 Score: 168
Period size: 43 Copynumber: 4.0 Consensus size: 43
72209325 ATAAGATTCA
* * * *
72209335 GATATGTGATTTCGTGTAAGACCACGTCTGGGACGTTGGCATC
1 GATATTTGATTACATGTAAGACCATGTCTGGGACGTTGGCATC
* * **
72209378 GAT-TTAAGATTTACGTGTAAGACCATGTCTGGGATATTGGCATC
1 GATATT-TGA-TTACATGTAAGACCATGTCTGGGACGTTGGCATC
* * * * * *
72209422 -ATATATGATTCCATGTAAGACCCTATTTGGGCCAG-TGGCATC
1 GATATTTGATTACATGTAAGACCATGTCTGGGAC-GTTGGCATC
72209464 GATATTTGATTACATGTAAGACCATGTCTGGGACGTTGGCAT
1 GATATTTGATTACATGTAAGACCATGTCTGGGACGTTGGCAT
72209506 TGTATGAGCT
Statistics
Matches: 100, Mismatches: 22, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
42 27 0.27
43 42 0.42
44 31 0.31
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (43 bp):
GATATTTGATTACATGTAAGACCATGTCTGGGACGTTGGCATC
Found at i:72212623 original size:48 final size:46
Alignment explanation
Indices: 72212571--72212711 Score: 174
Period size: 48 Copynumber: 3.0 Consensus size: 46
72212561 GTCAACTCTG
*
72212571 ATTAAATTTGATTTTTTAAATAATTTTAATAATATAAAATTTAAATTA
1 ATTAAATTTGATTTTTTAAAT--TTTTAATAATATAAAAATTAAATTA
* * * *
72212619 ATTAAATTTAAATTTTTAAATTTTTGAATCATATAAAAATTAAATTG
1 ATTAAATTTGATTTTTTAAATTTTT-AATAATATAAAAATTAAATTA
* *
72212666 ATTAAATTTGACTTTTTTAATCTTTTTAATGATATAAAAATTAAAT
1 ATTAAATTTGA-TTTTTTAA-ATTTTTAATAATATAAAAATTAAAT
72212712 CCATCCATTT
Statistics
Matches: 81, Mismatches: 9, Indels: 6
0.84 0.09 0.06
Matches are distributed among these distances:
46 4 0.05
47 28 0.35
48 44 0.54
49 5 0.06
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (46 bp):
ATTAAATTTGATTTTTTAAATTTTTAATAATATAAAAATTAAATTA
Found at i:72212639 original size:14 final size:15
Alignment explanation
Indices: 72212607--72212641 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
72212597 TAATAATATA
72212607 AAATTTAAATTAATT
1 AAATTTAAATTAATT
*
72212622 AAATTTAAATT-TTT
1 AAATTTAAATTAATT
72212636 AAATTT
1 AAATTT
72212642 TTGAATCATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.42
15 11 0.58
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
AAATTTAAATTAATT
Found at i:72214501 original size:18 final size:18
Alignment explanation
Indices: 72214478--72214516 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
72214468 TTGGCGGCCC
*
72214478 TGGTGGATCACGCTTCTT
1 TGGTGGATCAAGCTTCTT
*
72214496 TGGTGGATCAAGTTTCTT
1 TGGTGGATCAAGCTTCTT
72214514 TGG
1 TGG
72214517 CTTTGATTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.13, C:0.15, G:0.31, T:0.41
Consensus pattern (18 bp):
TGGTGGATCAAGCTTCTT
Found at i:72221295 original size:9 final size:9
Alignment explanation
Indices: 72221281--72221307 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
72221271 CTATCCCTAT
72221281 AAAATAATA
1 AAAATAATA
72221290 AAAATAATA
1 AAAATAATA
72221299 AAAATAATA
1 AAAATAATA
72221308 GTATAAGGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (9 bp):
AAAATAATA
Found at i:72223050 original size:355 final size:355
Alignment explanation
Indices: 72222399--72223109 Score: 1395
Period size: 355 Copynumber: 2.0 Consensus size: 355
72222389 CCAATTTAAC
72222399 TTTAATTTCACGCTTTTAGCCCCCAAATTTCATTTTACCTCCAATTTAGTCCCTATAAGATAAAA
1 TTTAATTTCACGCTTTTAGCCCCCAAATTTCATTTTACCTCCAATTTAGTCCCTATAAGATAAAA
72222464 AACCATAAATAGCTCAAATTAATAGGATCATACTCAAAATAAACATATAATTAATAAATAAAAAT
66 AACCATAAATAGCTCAAATTAATAGGATCATACTCAAAATAAACATATAATTAATAAATAAAAAT
72222529 ATGTCATCCTAGAGTATTATCAAATTCCCCCTACTTAGCCCATGCTTGCCCTCAAATATGGTTCC
131 ATGTCATCCTAGAGTATTATCAAATTCCCCCTACTTAGCCCATGCTTGCCCTCAAATATGGTTCC
72222594 TAACCACTGTGAAATTTAGATCTTGCCATGAAAGAAATACTACTCCAAAGTTTTATAACAAGTAG
196 TAACCACTGTGAAATTTAGATCTTGCCATGAAAGAAATACTACTCCAAAGTTTTATAACAAGTAG
72222659 GTATAATGCATGTGAAAAATAAAGAGAACCTTAACTTGCTTTAAGTAAAACTGAAAAAGTATTCC
261 GTATAATGCATGTGAAAAATAAAGAGAACCTTAACTTGCTTTAAGTAAAACTGAAAAAGTATTCC
72222724 AATTAATGCACACAAAAATCAAAATCGACT
326 AATTAATGCACACAAAAATCAAAATCGACT
* *
72222754 TTTAATTTTACGCTTTTAGCCCCCAAATTTCATTTTGCCTCCAATTTAGTCCCTATAAGATAAAA
1 TTTAATTTCACGCTTTTAGCCCCCAAATTTCATTTTACCTCCAATTTAGTCCCTATAAGATAAAA
72222819 AACCATAAATAGCTCAAATTAATAGGATCATACTCAAAATAAACATATAATTAATAAATAAAAAT
66 AACCATAAATAGCTCAAATTAATAGGATCATACTCAAAATAAACATATAATTAATAAATAAAAAT
*
72222884 ATGTCATCCTAGAGTATTATCAAATTTCCCCTACTTAGCCCATGCTTGCCCTCAAATATGGTTCC
131 ATGTCATCCTAGAGTATTATCAAATTCCCCCTACTTAGCCCATGCTTGCCCTCAAATATGGTTCC
72222949 TAACCACTGTGAAATTTAGATCTTGCCATGAAAGAAATACTACTCCAAAGTTTTATAACAAGTAG
196 TAACCACTGTGAAATTTAGATCTTGCCATGAAAGAAATACTACTCCAAAGTTTTATAACAAGTAG
72223014 GTATAATGCATGTGAAAAATAAAGAGAACCTTAACTTGCTTTAAGTAAAACTGAAAAAGTATTCC
261 GTATAATGCATGTGAAAAATAAAGAGAACCTTAACTTGCTTTAAGTAAAACTGAAAAAGTATTCC
72223079 AATTAATGCACACAAAAATCAAAATCGACT
326 AATTAATGCACACAAAAATCAAAATCGACT
72223109 T
1 T
72223110 GGATTGTTTC
Statistics
Matches: 353, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
355 353 1.00
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.30
Consensus pattern (355 bp):
TTTAATTTCACGCTTTTAGCCCCCAAATTTCATTTTACCTCCAATTTAGTCCCTATAAGATAAAA
AACCATAAATAGCTCAAATTAATAGGATCATACTCAAAATAAACATATAATTAATAAATAAAAAT
ATGTCATCCTAGAGTATTATCAAATTCCCCCTACTTAGCCCATGCTTGCCCTCAAATATGGTTCC
TAACCACTGTGAAATTTAGATCTTGCCATGAAAGAAATACTACTCCAAAGTTTTATAACAAGTAG
GTATAATGCATGTGAAAAATAAAGAGAACCTTAACTTGCTTTAAGTAAAACTGAAAAAGTATTCC
AATTAATGCACACAAAAATCAAAATCGACT
Found at i:72223441 original size:99 final size:99
Alignment explanation
Indices: 72223269--72223452 Score: 260
Period size: 99 Copynumber: 1.9 Consensus size: 99
72223259 GTTATTATTG
* * * * * *
72223269 CTTAAGAATATATTGAATCTTTTGACGCGAAGAGAGATAACAGCCAAGCACCCCACCCCGATTAC
1 CTTAAGAACATATCGAACCTTTTGACGCGAAGAAAAATAACAGCCAAGCACCCCACCCCAATTAC
72223334 TCAACCCAACATACTCCTAATTTACTATATTTTT
66 TCAACCCAACATACTCCTAATTTACTATATTTTT
* * *
72223368 CTTAAGAACGTATCGAACCTTTTGACGCGAAGAAAAATGACAGCCAAGCACCCTACCCCAATTAC
1 CTTAAGAACATATCGAACCTTTTGACGCGAAGAAAAATAACAGCCAAGCACCCCACCCCAATTAC
* * *
72223433 TCAGCCCAACGTATTCCTAA
66 TCAACCCAACATACTCCTAA
72223453 AAAAAATTAT
Statistics
Matches: 73, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
99 73 1.00
ACGTcount: A:0.35, C:0.28, G:0.12, T:0.24
Consensus pattern (99 bp):
CTTAAGAACATATCGAACCTTTTGACGCGAAGAAAAATAACAGCCAAGCACCCCACCCCAATTAC
TCAACCCAACATACTCCTAATTTACTATATTTTT
Found at i:72223464 original size:99 final size:98
Alignment explanation
Indices: 72223260--72223464 Score: 230
Period size: 99 Copynumber: 2.1 Consensus size: 98
72223250 ATCATTATTG
* * * * *
72223260 TTATTATTGCTTAAGAATATATTGAATCTTTTGACGCGAAGAGAGATAACAGCCAAGCACCCCAC
1 TTATT-TTGCTTAAGAACATATCGAACCTTTTGACGCGAAGAAAAATAACAGCCAAGCACCCCAC
* *** *
72223325 CCCGATTACTCAACCCAACATACTCCTAATTTAC
65 CCCAATTACTCAACCCAACATACTCCTAAAAAAA
* * * *
72223359 TATATTTTTCTTAAGAACGTATCGAACCTTTTGACGCGAAGAAAAATGACAGCCAAGCACCCTAC
1 T-TATTTTGCTTAAGAACATATCGAACCTTTTGACGCGAAGAAAAATAACAGCCAAGCACCCCAC
* * *
72223424 CCCAATTACTCAGCCCAACGTATTCCTAAAAAAAA
65 CCCAATTACTCAACCCAACATACTCCT-AAAAAAA
72223459 TTATTT
1 TTATTT
72223465 AATTTCGGTC
Statistics
Matches: 87, Mismatches: 17, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
99 79 0.91
100 8 0.09
ACGTcount: A:0.36, C:0.25, G:0.12, T:0.27
Consensus pattern (98 bp):
TTATTTTGCTTAAGAACATATCGAACCTTTTGACGCGAAGAAAAATAACAGCCAAGCACCCCACC
CCAATTACTCAACCCAACATACTCCTAAAAAAA
Found at i:72224670 original size:10 final size:10
Alignment explanation
Indices: 72224657--72224774 Score: 72
Period size: 10 Copynumber: 11.7 Consensus size: 10
72224647 GAAAATAAAG
72224657 TAATAAATAA
1 TAATAAATAA
72224667 TAAT--ATAA
1 TAATAAATAA
72224675 T-ATAATATAA
1 TAATAA-ATAA
72224685 T-ATAATATAA
1 TAATAA-ATAA
72224695 T-ATAATATAA
1 TAATAA-ATAA
72224705 T-ATAATATAA
1 TAATAA-ATAA
72224715 TAATATAAT-A
1 TAATA-AATAA
72224725 TAATATAAT-A
1 TAATA-AATAA
72224735 TAATATAATAAA
1 TAATA-AAT-AA
72224747 TAATAAAATAA
1 TAAT-AAATAA
* *
72224758 AAATAAAGAA
1 TAATAAATAA
*
72224768 AAATAAA
1 TAATAAA
72224775 AATTGGGTTG
Statistics
Matches: 98, Mismatches: 2, Indels: 16
0.84 0.02 0.14
Matches are distributed among these distances:
7 2 0.02
8 5 0.05
10 71 0.72
11 10 0.10
12 9 0.09
13 1 0.01
ACGTcount: A:0.66, C:0.00, G:0.01, T:0.33
Consensus pattern (10 bp):
TAATAAATAA
Found at i:72224676 original size:5 final size:5
Alignment explanation
Indices: 72224657--72224748 Score: 147
Period size: 5 Copynumber: 19.0 Consensus size: 5
72224647 GAAAATAAAG
72224657 TAATA -AATAA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
1 TAATA TAAT-A TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
72224707 TAATA T-A-A TAATA TAATA TAATA TAATA TAATA TAATA -AATA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
72224749 ATAAAATAAA
Statistics
Matches: 83, Mismatches: 0, Indels: 9
0.90 0.00 0.10
Matches are distributed among these distances:
3 2 0.02
4 9 0.11
5 69 0.83
6 3 0.04
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
TAATA
Found at i:72224757 original size:15 final size:15
Alignment explanation
Indices: 72224650--72224763 Score: 81
Period size: 15 Copynumber: 7.1 Consensus size: 15
72224640 AATATCTGAA
*
72224650 AATAAAGTAATAAAT
1 AATAAAATAATAAAT
*
72224665 AATAATATAATATAATAT
1 AATAAAAT-A-ATAA-AT
72224683 AATATAATATAATATAAT
1 AATA-AA-ATAATA-AAT
*
72224701 -ATAATATAATATAAT
1 AATAAAATAATA-AAT
72224716 AATATAATATAATATAAT
1 AATA-AA-ATAATA-AAT
*
72224734 -ATAATATAATAAAT
1 AATAAAATAATAAAT
72224748 AATAAAATAA-AAAT
1 AATAAAATAATAAAT
72224762 AA
1 AA
72224764 AGAAAAATAA
Statistics
Matches: 82, Mismatches: 7, Indels: 21
0.75 0.06 0.19
Matches are distributed among these distances:
14 9 0.11
15 30 0.37
16 6 0.07
17 11 0.13
18 21 0.26
19 3 0.04
20 2 0.02
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.34
Consensus pattern (15 bp):
AATAAAATAATAAAT
Found at i:72227635 original size:9 final size:9
Alignment explanation
Indices: 72227621--72227647 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
72227611 CTATCCCTAT
72227621 AAAATAATA
1 AAAATAATA
72227630 AAAATAATA
1 AAAATAATA
72227639 AAAATAATA
1 AAAATAATA
72227648 GTATAAGGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (9 bp):
AAAATAATA
Found at i:72230183 original size:12 final size:11
Alignment explanation
Indices: 72230166--72230200 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
72230156 TGCATCTAAT
72230166 TTTGTTCTTAGA
1 TTTGTTCTTA-A
72230178 TTTGTTCTTAA
1 TTTGTTCTTAA
*
72230189 TTTATTCTTAA
1 TTTGTTCTTAA
72230200 T
1 T
72230201 GATTTAATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 12 0.55
12 10 0.45
ACGTcount: A:0.20, C:0.09, G:0.09, T:0.63
Consensus pattern (11 bp):
TTTGTTCTTAA
Found at i:72236779 original size:32 final size:32
Alignment explanation
Indices: 72236736--72236799 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
72236726 ACTAGGGTTC
*
72236736 TTTTTACTATATTGGAGACTAGCAGAGAAATT
1 TTTTTACTATATTGGAGACTAGAAGAGAAATT
*
72236768 TTTTTATTATATTGGAGACTAGAAGAGAAATT
1 TTTTTACTATATTGGAGACTAGAAGAGAAATT
72236800 CAAATTAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.36, C:0.06, G:0.19, T:0.39
Consensus pattern (32 bp):
TTTTTACTATATTGGAGACTAGAAGAGAAATT
Found at i:72247402 original size:21 final size:23
Alignment explanation
Indices: 72247378--72247428 Score: 54
Period size: 21 Copynumber: 2.3 Consensus size: 23
72247368 CCTACTATTA
*
72247378 CAAACCCA-ACTAAA-CCTAGCT
1 CAAACCCACACTAAACCCTAGCC
**
72247399 CAAA-TGACACTAAACCCTAGCC
1 CAAACCCACACTAAACCCTAGCC
72247421 CAAACCCA
1 CAAACCCA
72247429 TAACAAAAAA
Statistics
Matches: 22, Mismatches: 5, Indels: 4
0.71 0.16 0.13
Matches are distributed among these distances:
20 1 0.05
21 10 0.45
22 10 0.45
23 1 0.05
ACGTcount: A:0.43, C:0.39, G:0.06, T:0.12
Consensus pattern (23 bp):
CAAACCCACACTAAACCCTAGCC
Found at i:72248634 original size:3 final size:3
Alignment explanation
Indices: 72248628--72248680 Score: 54
Period size: 3 Copynumber: 17.3 Consensus size: 3
72248618 ATTATCCTGC
* * *
72248628 TTA TTA TTA TTA CTA TTA -TA TTTA TTA TTA TTA GTA TCAA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA T-TA TTA TTA
72248674 TTA TTA T
1 TTA TTA T
72248681 ACTATTAAAC
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
2 2 0.05
3 35 0.85
4 4 0.10
ACGTcount: A:0.34, C:0.04, G:0.02, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:72259892 original size:18 final size:17
Alignment explanation
Indices: 72259869--72259905 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
72259859 ATTATATATT
72259869 ATTTATATATTTTTAAAA
1 ATTTATA-ATTTTTAAAA
*
72259887 ATTTATAATTTTTTAAA
1 ATTTATAATTTTTAAAA
72259904 AT
1 AT
72259906 ACAAATTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
ATTTATAATTTTTAAAA
Found at i:72259948 original size:19 final size:20
Alignment explanation
Indices: 72259910--72259975 Score: 62
Period size: 20 Copynumber: 3.4 Consensus size: 20
72259900 TAAAATACAA
* *
72259910 ATTTTGAAATTTTTATAAAT
1 ATTTTGAAATTTTAAAAAAT
72259930 ATTTT-AAATTTTAAAAAAT
1 ATTTTGAAATTTTAAAAAAT
* * * * *
72259949 TTTTTGGATTTTTTAAAATT
1 ATTTTGAAATTTTAAAAAAT
72259969 ATTTTGA
1 ATTTTGA
72259976 TTTTTTTTTT
Statistics
Matches: 36, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
19 16 0.44
20 20 0.56
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (20 bp):
ATTTTGAAATTTTAAAAAAT
Found at i:72259952 original size:18 final size:18
Alignment explanation
Indices: 72259908--72259952 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
72259898 TTTAAAATAC
* * *
72259908 AAATTTTGAAATTTTTAT
1 AAATTTTTAAATTTTAAA
72259926 AAATATTTTAAATTTTAAA
1 AAAT-TTTTAAATTTTAAA
72259945 AAATTTTT
1 AAATTTTT
72259953 TGGATTTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 8 0.35
19 15 0.65
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (18 bp):
AAATTTTTAAATTTTAAA
Found at i:72259982 original size:20 final size:19
Alignment explanation
Indices: 72259944--72259981 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
72259934 TAAATTTTAA
72259944 AAAATTTTTTGGATTTTTT
1 AAAATTTTTTGGATTTTTT
72259963 AAAATTATTTT-GATTTTTT
1 AAAATT-TTTTGGATTTTTT
72259982 TTTTGTAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.29, C:0.00, G:0.08, T:0.63
Consensus pattern (19 bp):
AAAATTTTTTGGATTTTTT
Found at i:72260222 original size:152 final size:155
Alignment explanation
Indices: 72260047--72260354 Score: 523
Period size: 152 Copynumber: 2.0 Consensus size: 155
72260037 ATAAAGAGAT
* * *
72260047 ATTTACACAAATCTGTTATTTGAATTATTCGAATTGTCAAATTCAACTCGACTCAACCTTAAAAC
1 ATTTACACAAATCTATTATTTGAATTATTCGAATTGTCAAATTCAACTAGACTCAAACTTAAAAC
*
72260112 TTAAATTACTTATTCGAGTTAACTCAAATAACTCGATTCAATTAATTTAAAATTT-AAA-TTTTT
66 CTAAATTACTTATTCGAGTTAACTCAAATAACTCGATTCAATTAATTTAAAATTTAAAATTTTTT
72260175 T-TTTTTTCGAATCCACTCTCACCC
131 TATTTTTTCGAATCCACTCTCACCC
*
72260199 ATTTACACAAATCTATTATTTGAATTATTCGAATTGTCAAATTCAACTAGACTCAAACTTGAAAC
1 ATTTACACAAATCTATTATTTGAATTATTCGAATTGTCAAATTCAACTAGACTCAAACTTAAAAC
* *
72260264 CTAAATTACTTATTCGAGTTGACTCAAATAGCTCGATTCAATTAATTTAAAATTTAAAATTTTTT
66 CTAAATTACTTATTCGAGTTAACTCAAATAACTCGATTCAATTAATTTAAAATTTAAAA-TTTTT
72260329 TTATTTTTTCGAATCCACTCTCACCC
130 TTATTTTTTCGAATCCACTCTCACCC
72260355 CTACATTTAT
Statistics
Matches: 145, Mismatches: 7, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
152 113 0.78
153 3 0.02
155 6 0.04
156 23 0.16
ACGTcount: A:0.35, C:0.19, G:0.06, T:0.40
Consensus pattern (155 bp):
ATTTACACAAATCTATTATTTGAATTATTCGAATTGTCAAATTCAACTAGACTCAAACTTAAAAC
CTAAATTACTTATTCGAGTTAACTCAAATAACTCGATTCAATTAATTTAAAATTTAAAATTTTTT
TATTTTTTCGAATCCACTCTCACCC
Found at i:72280406 original size:24 final size:24
Alignment explanation
Indices: 72280377--72280440 Score: 83
Period size: 24 Copynumber: 2.7 Consensus size: 24
72280367 TTTCTAGAAG
* * *
72280377 ATTTAATATTTATTAGTATAATGT
1 ATTTAACATTTATTAGCATAATAT
72280401 ATTTAACATTTATTAGCATAATAT
1 ATTTAACATTTATTAGCATAATAT
* *
72280425 ATTTGACATTGATTAG
1 ATTTAACATTTATTAG
72280441 AATTAGTTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.38, C:0.05, G:0.09, T:0.48
Consensus pattern (24 bp):
ATTTAACATTTATTAGCATAATAT
Found at i:72284220 original size:24 final size:24
Alignment explanation
Indices: 72284169--72284221 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
72284159 TTTATTATTT
* * *
72284169 ATTAGTATGATATATTTAGCATTT
1 ATTAGCATAATATATTTAGCATTG
72284193 ATTAGCATAATATATTT-GACATTG
1 ATTAGCATAATATATTTAG-CATTG
72284217 ATTAG
1 ATTAG
72284222 AATTAGGTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 1 0.04
24 24 0.96
ACGTcount: A:0.36, C:0.06, G:0.13, T:0.45
Consensus pattern (24 bp):
ATTAGCATAATATATTTAGCATTG
Found at i:72285703 original size:29 final size:30
Alignment explanation
Indices: 72285661--72285721 Score: 70
Period size: 30 Copynumber: 2.1 Consensus size: 30
72285651 TATTAGATAT
*
72285661 CACATTGAACATTT-TCAAAGTATAGGTAC
1 CACATTGAACATTTATCAAAGTAAAGGTAC
** * *
72285690 CACATTGGGCATTTATGAAAGTAAATGTAC
1 CACATTGAACATTTATCAAAGTAAAGGTAC
72285720 CA
1 CA
72285722 AATAATAAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
29 12 0.46
30 14 0.54
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (30 bp):
CACATTGAACATTTATCAAAGTAAAGGTAC
Found at i:72294882 original size:15 final size:16
Alignment explanation
Indices: 72294857--72294899 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
72294847 TCCTCTCCTA
*
72294857 TCTTCTTTCTTCT-TT
1 TCTTCTCTCTTCTATT
*
72294872 TCTTTTCTCTT-TATT
1 TCTTCTCTCTTCTATT
72294887 TCTTCTCTCTTCT
1 TCTTCTCTCTTCT
72294900 CCCTTGCGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
14 1 0.04
15 21 0.91
16 1 0.04
ACGTcount: A:0.02, C:0.28, G:0.00, T:0.70
Consensus pattern (16 bp):
TCTTCTCTCTTCTATT
Found at i:72296738 original size:6 final size:6
Alignment explanation
Indices: 72296727--72296771 Score: 67
Period size: 6 Copynumber: 7.8 Consensus size: 6
72296717 TTCATTTCTC
*
72296727 TTTATA TTTATA TTTATA TTTATA TTTATA TTT-T- TTTATG TTTAT
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTAT
72296772 TTTGTTTTCC
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
4 3 0.08
5 2 0.05
6 32 0.86
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (6 bp):
TTTATA
Found at i:72297659 original size:15 final size:16
Alignment explanation
Indices: 72297633--72297662 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
72297623 CTGAGAATTT
72297633 TCCCTATTTTATTGAC
1 TCCCTATTTTATTGAC
72297649 TCCCT-TTTTATTGA
1 TCCCTATTTTATTGA
72297663 GATTTGATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.17, C:0.23, G:0.07, T:0.53
Consensus pattern (16 bp):
TCCCTATTTTATTGAC
Found at i:72297786 original size:9 final size:8
Alignment explanation
Indices: 72297755--72297785 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
72297745 AGTGAAGTGA
72297755 AAAAAAAG
1 AAAAAAAG
72297763 AAAAAAAG
1 AAAAAAAG
72297771 AAAAAAAG
1 AAAAAAAG
72297779 AAAAAAA
1 AAAAAAA
72297786 ATATTTACAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (8 bp):
AAAAAAAG
Found at i:72300397 original size:25 final size:25
Alignment explanation
Indices: 72300369--72300451 Score: 85
Period size: 25 Copynumber: 3.3 Consensus size: 25
72300359 GTCCCTCGTA
72300369 AAGCCTCTGTGGTGATTTATTTGGG
1 AAGCCTCTGTGGTGATTTATTTGGG
* * *** ***
72300394 AAGCCTCTGTGGCGAGTCCCTTATA
1 AAGCCTCTGTGGTGATTTATTTGGG
*
72300419 AAGCCTTTGTGGTGATTTATTTGGG
1 AAGCCTCTGTGGTGATTTATTTGGG
72300444 AAGCCTCT
1 AAGCCTCT
72300452 ATGGCGAGTC
Statistics
Matches: 40, Mismatches: 18, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.18, C:0.18, G:0.28, T:0.36
Consensus pattern (25 bp):
AAGCCTCTGTGGTGATTTATTTGGG
Found at i:72300409 original size:50 final size:50
Alignment explanation
Indices: 72300333--72300480 Score: 208
Period size: 50 Copynumber: 3.0 Consensus size: 50
72300323 CTATGTGGCT
* * *
72300333 ATTTATTTGGGAAGCCTTTGTTGCGAGTCCCTCGTAAAGCCTCTGTGGTG
1 ATTTATTTGGGAAGCCTCTGTGGCGAGTCCCTCATAAAGCCTCTGTGGTG
* *
72300383 ATTTATTTGGGAAGCCTCTGTGGCGAGTCCCTTATAAAGCCTTTGTGGTG
1 ATTTATTTGGGAAGCCTCTGTGGCGAGTCCCTCATAAAGCCTCTGTGGTG
* * *
72300433 ATTTATTTGGGAAGCCTCTATGGCGAGTCACCT-ATAAATCCTTTGTGG
1 ATTTATTTGGGAAGCCTCTGTGGCGAGTC-CCTCATAAAGCCTCTGTGG
72300481 CAAGGTGCAT
Statistics
Matches: 90, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
50 87 0.97
51 3 0.03
ACGTcount: A:0.19, C:0.19, G:0.26, T:0.36
Consensus pattern (50 bp):
ATTTATTTGGGAAGCCTCTGTGGCGAGTCCCTCATAAAGCCTCTGTGGTG
Found at i:72303006 original size:3 final size:3
Alignment explanation
Indices: 72302998--72303067 Score: 140
Period size: 3 Copynumber: 23.3 Consensus size: 3
72302988 TCAATGGAAC
72302998 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
72303046 ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA A
72303068 ACGAGATGCT
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 67 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:72303916 original size:904 final size:877
Alignment explanation
Indices: 72302226--72304322 Score: 2730
Period size: 877 Copynumber: 2.4 Consensus size: 877
72302216 GTAAAGAAAA
* * * ** *
72302226 GGAGTGAGCTTATAATAGCCCTAAGGCAAGTCTAATTTTTAAACCATTACATATAATTGTTCAAA
1 GGAGTGAGCTTATGACAGCCC-AATGTTAGTTTAATTTTTAAACCATTACATATAATTGTTCAAA
* * * * *
72302291 CGACAAAACATTGAATTTAAAACATCATAGCAAATTAAGCATAATATAAGAGACATTTATTAAAT
65 CGATAAAGCATTCAATTTAAAACATCATAGCAAATTAAGCATACTATAA-AGACATTTAGTAAAT
72302356 CAATGCATGTACAAGTTATGTTCATGATGCAATGCAA-T-T-A---T--ATTCCCACTCATCCAT
129 CAATGCATGTACAAGTTATGTTCATGATGCAATGCAATTATAATTTTAAATTCCCACTCATCCAT
* * * * **
72302413 CCTATTCGCCCTCGAGCATTGCTTGACACTCCAAAACAGATTTCAGTAATTGGCCATCCCAAATT
194 CCTATTCGCCCTCGAGCATCGCTTGACACTCCAAAACACATTTCAGTAACTGACCATCCCGGATT
* *
72302478 TCTCGATTACGA-TGTTCGTTCACTTGTCATCCGTGATGATGACTTTTACTATAATAACTTACCA
259 TCCCGATTACGATTGTT-GTTCACTTGTCATCCGTGATGATGACTTTTACTACAATAACTTACCA
* * * * *
72302542 AATATAACACCCCCGACCAGGATTAAGAGTTTGGACAAAGTCAAAGGTGCTACATTGATCACCGA
323 AATATAAAACCCCCAACCAAGATTAAGAGTTTGAACAAAGTCAAAGGCGCTACATTGATCACCGA
*
72302607 AGTGATCCAGTAAAGCTATTCTTTTGCTTGAGTTGAAATGTATGAAAATCACTCTTTTGTTTTTA
388 AGTGATCCAGTAAAGCCATTCTTTTGCTTGAGTTGAAATGTATGAAAATCACTCTTTTGTTTTTA
*
72302672 AGAAAGACATTCATTAATTAATCCAGCTTTACTTAGTAATCTATCTACAATATTATTAACGTGAA
453 AGAAAGACATTCATTAATTAATCCAGCTTTACTCAGTAATCTATCTACAATATTATTAACGTGAA
*
72302737 GTGTTTTTTGAGAAAAAGATTTATGGTTTTAAAAGACTTATCAAAACTTTAAGTATTTTGCAAAG
518 GTGTTTTTTGAGAAAAAGATTTATGGTTTTAAAAGACTTATCAAAACTTTAAGAATTTTGCAAAG
* *
72302802 TAATGGAAACCAATAATAAGAATAATAGTTTTCTAAACCAATTAGCATGCAATAATTATAGTAAT
583 CAATGGAAACCAATAATAAGAATAATAGTTTTCTAAACCAATTAGCATGCAATAATTAGAGTAAT
* * *
72302867 AACTAAATGACATGCTTAAAAATTGATAAGCTAAATAGTCCAAAACCACAATTATGAAAGCAATA
648 AACTAAAAGACATGCTTAAAAATTGATAAGCTAAATAATCCAAAACCACAATTATCAAAGCAATA
*
72302932 AATAATTAATAGCTTACGACCCAATTAACAAACCAAAAAAATGATTAAGGAAAACTTCAATGGAA
713 AATAATTAAAAGCTTACGACCCAATTAACAAACCAAAAAAATGATTAAGGAAAACTTCAATGGAA
* *
72302997 CATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA
778 CATAATAAT-A-AATAATAA-AA-AATAA-AATAATAAT-ACAA-AAT--TAAT--T--CAATAA
* * *
72303062 TAATAAACGAGATGCTAGTCCGAGGTTCTTTCGATGCTAACCTGAGAGGTAAGAAAAAGGC
830 CAAT--ACGAG-TCCTAGTCC-----TC-TACG-T--T-ACCTGAGAGGTAAGAAAAAGGC
72303123 GGAGTGAGCTTATGACAGCCCAATGTTAGTTTAATTTTTAAACCATTACATATAATTGTTCAAAC
1 GGAGTGAGCTTATGACAGCCCAATGTTAGTTTAATTTTTAAACCATTACATATAATTGTTCAAAC
*
72303188 GATAAAGCATTCAGTTTAAAACATCATAGCAAATTAAGCATACTATAAATGACATTTAGTAAATC
66 GATAAAGCATTCAATTTAAAACATCATAGCAAATTAAGCATACTATAAA-GACATTTAGTAAATC
* *
72303253 AATGCATGTACAAGTTATGTTCATGATGTAATACAATTATAATTTTAAATTCCCACTCATCCATC
130 AATGCATGTACAAGTTATGTTCATGATGCAATGCAATTATAATTTTAAATTCCCACTCATCCATC
* * * * *
72303318 CTATTCACCCTCAAACATCGCTTGATACTCCAAAACACATTTCAGTAACTGACCATCTCGGATTT
195 CTATTCGCCCTCGAGCATCGCTTGACACTCCAAAACACATTTCAGTAACTGACCATCCCGGATTT
*
72303383 CCCGATTACGATTGTTGTTCACTTGTTATCCGTGATGATGACTTTTACTACAATAACTTACCAAA
260 CCCGATTACGATTGTTGTTCACTTGTCATCCGTGATGATGACTTTTACTACAATAACTTACCAAA
* * * * * *
72303448 TGTAAAACCCCCAACCAAGCTTAAGAGTTTTAACTAAGTCAAAGGCGTTACATTGATCACTGAAG
325 TATAAAACCCCCAACCAAGATTAAGAGTTTGAACAAAGTCAAAGGCGCTACATTGATCACCGAAG
* * *
72303513 TGATCTAGTAAAGCCATTCTTTTGCTTGAGTTGAATTGTATGAAAATCACTTTTTTGTTTTTAAG
390 TGATCCAGTAAAGCCATTCTTTTGCTTGAGTTGAAATGTATGAAAATCACTCTTTTGTTTTTAAG
* * *
72303578 AAAGACATTCATTAATTAAT-CTGACTTTACTCAGTAATCTATTTACAATATTATTAATGTGAAG
455 AAAGACATTCATTAATTAATCCAG-CTTTACTCAGTAATCTATCTACAATATTATTAACGTGAAG
* * **
72303642 T-TTTTTTTATAAAGCTG-TTTATGGTTTTAAAAGACTTATCAAAACTTTAAGAATTTTGCAAAG
519 TGTTTTTTGAGAAA-AAGATTTATGGTTTTAAAAGACTTATCAAAACTTTAAGAATTTTGCAAAG
* * * *
72303705 CAGTGGAAATCAATAATAAGATTAATGGTTTTCTAAACCAATTAGCATGCAATAATTAGAGTAAT
583 CAATGGAAACCAATAATAAGAATAATAGTTTTCTAAACCAATTAGCATGCAATAATTAGAGTAAT
* * * * * * *
72303770 AAGTAAAAGTCATGCTTAAAATTTTATAAGCTAAATAATCCCAAACCATAGTTATCAAAGCAATA
648 AACTAAAAGACATGCTTAAAAATTGATAAGCTAAATAATCCAAAACCACAATTATCAAAGCAATA
* * *
72303835 AATAATTAAAAGCTTACGACCCCATTAACAAACCAATAAAATGATTAATGAAAACTTCAATGGAA
713 AATAATTAAAAGCTTACGACCCAATTAACAAACCAAAAAAATGATTAAGGAAAACTTCAATGGAA
* * ** * * * ** ** * ** *
72303900 CATAATAATAAATAATAAAAAATGAGATGCTAGTCCGAGGTTCCTTCGATGCCAATCCGAGTCCT
778 CATAATAATAAATAATAAAAAATAAAATAATAATACAAAATTAATTCAATAACAATACGAGTCCT
* * *
72303965 AGTTCTCTACGTTACCTGAGAGGTAAGATAAAGGG
843 AGTCCTCTACGTTACCTGAGAGGTAAGAAAAAGGC
* * * *
72304000 GGAGTAAGCTTATGTCAGTCCAATGTTAGTTTAATTTTTAAACCATTACATATAATTGTTCAAAT
1 GGAGTGAGCTTATGACAGCCCAATGTTAGTTTAATTTTTAAACCATTACATATAATTGTTCAAAC
* *
72304065 GATAAAGCATTCAATTTAAAACA-CTATAGCAAATTAAGCATACTATAAGGGACATTCAGTAAAT
66 GATAAAGCATTCAATTTAAAACATC-ATAGCAAATTAAGCATACTATAA-AGACATTTAGTAAAT
*
72304129 CAATGCATGTACAAGTTATGTTCATGATGCAATGCAATTATAATTTTAAATTCCCCAC-CACCCA
129 CAATGCATGTACAAGTTATGTTCATGATGCAATGCAATTATAATTTTAAATT-CCCACTCATCCA
* * * * *
72304193 TCCTATTCGCCCTCGAGCATCACTCGACATTCAAAAACACATTTTAGTAACTGACCATCCCGGAT
193 TCCTATTCGCCCTCGAGCATCGCTTGACACTCCAAAACACATTTCAGTAACTGACCATCCCGGAT
* * * ** * * *
72304258 TTCCC-AGTGACAATAGTCATTCACTTGTCATCTGTGACGATGACTTTTACTTCAATAACTTACC
258 TTCCCGA-TTACGATTGTTGTTCACTTGTCATCCGTGATGATGACTTTTACTACAATAACTTACC
72304322 A
322 A
72304323 TCCTAGTTTG
Statistics
Matches: 1060, Mismatches: 124, Indels: 52
0.86 0.10 0.04
Matches are distributed among these distances:
876 2 0.00
877 303 0.29
878 6 0.01
880 1 0.00
881 3 0.00
882 2 0.00
887 7 0.01
888 4 0.00
890 5 0.00
892 1 0.00
894 2 0.00
895 1 0.00
896 132 0.12
897 21 0.02
898 6 0.01
899 5 0.00
900 2 0.00
901 8 0.01
902 2 0.00
903 241 0.23
904 302 0.28
905 4 0.00
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.32
Consensus pattern (877 bp):
GGAGTGAGCTTATGACAGCCCAATGTTAGTTTAATTTTTAAACCATTACATATAATTGTTCAAAC
GATAAAGCATTCAATTTAAAACATCATAGCAAATTAAGCATACTATAAAGACATTTAGTAAATCA
ATGCATGTACAAGTTATGTTCATGATGCAATGCAATTATAATTTTAAATTCCCACTCATCCATCC
TATTCGCCCTCGAGCATCGCTTGACACTCCAAAACACATTTCAGTAACTGACCATCCCGGATTTC
CCGATTACGATTGTTGTTCACTTGTCATCCGTGATGATGACTTTTACTACAATAACTTACCAAAT
ATAAAACCCCCAACCAAGATTAAGAGTTTGAACAAAGTCAAAGGCGCTACATTGATCACCGAAGT
GATCCAGTAAAGCCATTCTTTTGCTTGAGTTGAAATGTATGAAAATCACTCTTTTGTTTTTAAGA
AAGACATTCATTAATTAATCCAGCTTTACTCAGTAATCTATCTACAATATTATTAACGTGAAGTG
TTTTTTGAGAAAAAGATTTATGGTTTTAAAAGACTTATCAAAACTTTAAGAATTTTGCAAAGCAA
TGGAAACCAATAATAAGAATAATAGTTTTCTAAACCAATTAGCATGCAATAATTAGAGTAATAAC
TAAAAGACATGCTTAAAAATTGATAAGCTAAATAATCCAAAACCACAATTATCAAAGCAATAAAT
AATTAAAAGCTTACGACCCAATTAACAAACCAAAAAAATGATTAAGGAAAACTTCAATGGAACAT
AATAATAAATAATAAAAAATAAAATAATAATACAAAATTAATTCAATAACAATACGAGTCCTAGT
CCTCTACGTTACCTGAGAGGTAAGAAAAAGGC
Found at i:72304756 original size:15 final size:14
Alignment explanation
Indices: 72304719--72304765 Score: 60
Period size: 15 Copynumber: 3.3 Consensus size: 14
72304709 CGCATTTAAG
72304719 GTTTGCACATACAG-
1 GTTT-CACATACAGA
*
72304733 GTTTCACATAGAGA
1 GTTTCACATACAGA
72304747 GTTCTCACATACAGA
1 GTT-TCACATACAGA
72304762 GTTT
1 GTTT
72304766 GCATGTAGGG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
13 8 0.28
14 8 0.28
15 13 0.45
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (14 bp):
GTTTCACATACAGA
Found at i:72304780 original size:13 final size:13
Alignment explanation
Indices: 72304762--72304831 Score: 50
Period size: 13 Copynumber: 5.2 Consensus size: 13
72304752 CACATACAGA
*
72304762 GTTTGCATGTAGG
1 GTTTGCATATAGG
*
72304775 GTTTGCATATAAG
1 GTTTGCATATAGG
** * *
72304788 GTTCACACATACAGA
1 GTT--TGCATATAGG
*
72304803 GTTTGCATGTAGG
1 GTTTGCATATAGG
*
72304816 GTTTGCATATAAG
1 GTTTGCATATAGG
72304829 GTT
1 GTT
72304832 CACACATACA
Statistics
Matches: 41, Mismatches: 14, Indels: 4
0.69 0.24 0.07
Matches are distributed among these distances:
13 33 0.80
15 8 0.20
ACGTcount: A:0.26, C:0.11, G:0.27, T:0.36
Consensus pattern (13 bp):
GTTTGCATATAGG
Found at i:72304799 original size:41 final size:41
Alignment explanation
Indices: 72304747--72304878 Score: 210
Period size: 41 Copynumber: 3.2 Consensus size: 41
72304737 CACATAGAGA
*
72304747 GTTCTCACATACAGAGTTTGCATGTAGGGTTTGCATATAAG
1 GTTCACACATACAGAGTTTGCATGTAGGGTTTGCATATAAG
72304788 GTTCACACATACAGAGTTTGCATGTAGGGTTTGCATATAAG
1 GTTCACACATACAGAGTTTGCATGTAGGGTTTGCATATAAG
* * *
72304829 GTTCACACATACAAAGTTTGCATGTAGTGTTTGCACATATAGG
1 GTTCACACATACAGAGTTTGCATGTAGGGTTTG--CATATAAG
72304872 GTTCACA
1 GTTCACA
72304879 TATAAGGTTC
Statistics
Matches: 85, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
41 71 0.84
43 14 0.16
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.33
Consensus pattern (41 bp):
GTTCACACATACAGAGTTTGCATGTAGGGTTTGCATATAAG
Found at i:72304911 original size:24 final size:24
Alignment explanation
Indices: 72304874--72305051 Score: 105
Period size: 24 Copynumber: 7.5 Consensus size: 24
72304864 CATATAGGGT
*
72304874 TCACATATAAGGTTCGCATACTAAA
1 TCACATA-AGGGTTCGCATACTAAA
* * * *
72304899 TCACTTGAGGGTTAGCATAATAAA
1 TCACATAAGGGTTCGCATACTAAA
* *
72304923 TCACATAAAGGTTCACATA-TATAA
1 TCACATAAGGGTTCGCATACTA-AA
** ** * *
72304947 TCGTATGGGGGTTCGTATATTAAA
1 TCACATAAGGGTTCGCATACTAAA
72304971 TC-CATAAGGGTTCGCATACTAAA
1 TCACATAAGGGTTCGCATACTAAA
* * * *
72304994 TCATATTAGGGTTTGCATATTAAA
1 TCACATAAGGGTTCGCATACTAAA
**
72305018 --ACATATAGGGTTTTTCATACTAAA
1 TCACATA-AGGG-TTCGCATACTAAA
*
72305042 TC-TATAAGGG
1 TCACATAAGGG
72305052 CTTGATTATA
Statistics
Matches: 115, Mismatches: 31, Indels: 15
0.71 0.19 0.09
Matches are distributed among these distances:
22 3 0.03
23 24 0.21
24 78 0.68
25 10 0.09
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33
Consensus pattern (24 bp):
TCACATAAGGGTTCGCATACTAAA
Found at i:72305006 original size:47 final size:47
Alignment explanation
Indices: 72304880--72305051 Score: 147
Period size: 47 Copynumber: 3.7 Consensus size: 47
72304870 GGGTTCACAT
*
72304880 ATAA-GGTTCGCATACTAAATCACT-TGAGGGTTAGCATAATAAATCAC
1 ATAAGGGTTCGCATACTAAATCA-TATGAGGGTTAGCATATTAAATC-C
* * * * * *
72304927 ATAAAGGTTCACATA-TATAATCGTATGGGGGTTCGTATATTAAATCC
1 ATAAGGGTTCGCATACTA-AATCATATGAGGGTTAGCATATTAAATCC
* * *
72304974 ATAAGGGTTCGCATACTAAATCATATTAGGGTTTGCATATTAAA-AC
1 ATAAGGGTTCGCATACTAAATCATATGAGGGTTAGCATATTAAATCC
** *
72305020 ATATAGGGTTTTTCATACTAAATC-TATAAGGG
1 ATA-AGGG-TTCGCATACTAAATCATATGAGGG
72305052 CTTGATTATA
Statistics
Matches: 102, Mismatches: 17, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
46 4 0.04
47 53 0.52
48 45 0.44
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (47 bp):
ATAAGGGTTCGCATACTAAATCATATGAGGGTTAGCATATTAAATCC
Found at i:72305097 original size:58 final size:58
Alignment explanation
Indices: 72305033--72305228 Score: 195
Period size: 58 Copynumber: 3.4 Consensus size: 58
72305023 TAGGGTTTTT
** *
72305033 CATACTAAATC-TATAAGGGCTTGATTATAGGGTTCACATAATATATAATAAGAGATCA
1 CATACTAAATCATATAAGGG-TTGATTATAGGGTTCACATAATATATGGTAAGAGATCG
* * *
72305091 CATACTAAGTCATATAAGGGTTTGCA-TAT-GAGTTCGA-ATAATATATGGTAAAAGATCG
1 CATACTAAATCATATAAGGG-TTG-ATTATAGGGTTC-ACATAATATATGGTAAGAGATCG
* * * ** *
72305149 CATACTAAATCATATAAAGGTT-TTTGTATGGGTTTGCATAATATATGGTATGAGATCG
1 CATACTAAATCATATAAGGGTTGATTATA-GGGTTCACATAATATATGGTAAGAGATCG
*
72305207 CATACTAAATCATATAAAGGTT
1 CATACTAAATCATATAAGGGTT
72305229 TTCATATGGG
Statistics
Matches: 115, Mismatches: 16, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
56 2 0.02
57 2 0.02
58 95 0.83
59 15 0.13
60 1 0.01
ACGTcount: A:0.38, C:0.11, G:0.18, T:0.33
Consensus pattern (58 bp):
CATACTAAATCATATAAGGGTTGATTATAGGGTTCACATAATATATGGTAAGAGATCG
Found at i:72305229 original size:58 final size:58
Alignment explanation
Indices: 72305069--72305252 Score: 251
Period size: 58 Copynumber: 3.2 Consensus size: 58
72305059 ATAGGGTTCA
** * * * * * *
72305069 CATAATATATAATAAGAGATCACATACTAAGTCATATAAGGGTTTGCATATGAGTTCG
1 CATAATATATGGTAAGAGATCGCATACTAAATCATATAAAGGTTTTCATATGGGTTTG
* * **
72305127 AATAATATATGGTAAAAGATCGCATACTAAATCATATAAAGGTTTTTGTATGGGTTTG
1 CATAATATATGGTAAGAGATCGCATACTAAATCATATAAAGGTTTTCATATGGGTTTG
*
72305185 CATAATATATGGTATGAGATCGCATACTAAATCATATAAAGGTTTTCATATGGGTTTG
1 CATAATATATGGTAAGAGATCGCATACTAAATCATATAAAGGTTTTCATATGGGTTTG
72305243 CATAATATAT
1 CATAATATAT
72305253 AGGGTTCACA
Statistics
Matches: 109, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
58 109 1.00
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.35
Consensus pattern (58 bp):
CATAATATATGGTAAGAGATCGCATACTAAATCATATAAAGGTTTTCATATGGGTTTG
Found at i:72305290 original size:18 final size:18
Alignment explanation
Indices: 72305243--72305277 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
72305233 TATGGGTTTG
72305243 CATAATATATAGGGTTCA
1 CATAATATATAGGGTTCA
*
72305261 CATAAGATATAGGGTTC
1 CATAATATATAGGGTTC
72305278 GTATTATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.11, G:0.20, T:0.31
Consensus pattern (18 bp):
CATAATATATAGGGTTCA
Found at i:72307813 original size:20 final size:21
Alignment explanation
Indices: 72307788--72307827 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
72307778 TGTGATAAAT
72307788 ATTATAAA-TAATAAAAAACC
1 ATTATAAATTAATAAAAAACC
72307808 ATTATAAATTTAATAAAAAA
1 ATTATAAA-TTAATAAAAAA
72307828 AGTATTATGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 8 0.44
22 10 0.56
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (21 bp):
ATTATAAATTAATAAAAAACC
Found at i:72308472 original size:17 final size:19
Alignment explanation
Indices: 72308436--72308473 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
72308426 AATTAAAAAG
*
72308436 TTTAATATATATATAGTTT
1 TTTAAAATATATATAGTTT
72308455 TTTAAAATAT-TATA-TTT
1 TTTAAAATATATATAGTTT
72308472 TT
1 TT
72308474 ATCATTTCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 5 0.28
18 4 0.22
19 9 0.50
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.61
Consensus pattern (19 bp):
TTTAAAATATATATAGTTT
Found at i:72308717 original size:22 final size:22
Alignment explanation
Indices: 72308676--72308717 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
72308666 GTAACGGATC
*
72308676 GATTTTTAATACTTTTTTTATA
1 GATTTTTAATACTTTATTTATA
**
72308698 GATTTTTAATGGTTTATTTA
1 GATTTTTAATACTTTATTTA
72308718 ATTGAGTTAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.26, C:0.02, G:0.10, T:0.62
Consensus pattern (22 bp):
GATTTTTAATACTTTATTTATA
Found at i:72309453 original size:53 final size:53
Alignment explanation
Indices: 72309396--72309512 Score: 218
Period size: 53 Copynumber: 2.2 Consensus size: 53
72309386 CCGAATTAAC
72309396 AATGAAAATTAAAATTATGCACACAGAATATATATTTATACACAATCTAATAT
1 AATGAAAATTAAAATTATGCACACAGAATATATATTTATACACAATCTAATAT
72309449 AATGAAAATTAAAATTATGCACACAGAATATATATTTATACACAATCTAATAT
1 AATGAAAATTAAAATTATGCACACAGAATATATATTTATACACAATCTAATAT
*
72309502 -ATGAACATTAA
1 AATGAAAATTAA
72309513 TGGCTATAAG
Statistics
Matches: 63, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
52 10 0.16
53 53 0.84
ACGTcount: A:0.51, C:0.11, G:0.06, T:0.32
Consensus pattern (53 bp):
AATGAAAATTAAAATTATGCACACAGAATATATATTTATACACAATCTAATAT
Found at i:72314492 original size:3 final size:3
Alignment explanation
Indices: 72314484--72314508 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
72314474 TACCTAACTT
72314484 ACC ACC ACC ACC ACC ACC ACC ACC A
1 ACC ACC ACC ACC ACC ACC ACC ACC A
72314509 TAACTACTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.64, G:0.00, T:0.00
Consensus pattern (3 bp):
ACC
Found at i:72326978 original size:29 final size:30
Alignment explanation
Indices: 72326893--72326980 Score: 83
Period size: 30 Copynumber: 2.9 Consensus size: 30
72326883 TTTTGGTGCT
* * * *
72326893 TATATTTTGATTCTATATTTATATTT-AATC
1 TATATTTTTATTTTAT-TTTAGATTTGATTC
*
72326923 TA-ATTTTTATTATTTATTTTAGTTTTGATTC
1 TATATTTTTA-T-TTTATTTTAGATTTGATTC
72326954 TATATTTTTATTTTATTTTA-ATTTGAT
1 TATATTTTTATTTTATTTTAGATTTGAT
72326981 AATGAATTTT
Statistics
Matches: 48, Mismatches: 6, Indels: 9
0.76 0.10 0.14
Matches are distributed among these distances:
29 12 0.25
30 19 0.40
31 10 0.21
32 7 0.15
ACGTcount: A:0.26, C:0.03, G:0.05, T:0.66
Consensus pattern (30 bp):
TATATTTTTATTTTATTTTAGATTTGATTC
Found at i:72326990 original size:48 final size:48
Alignment explanation
Indices: 72326897--72326990 Score: 109
Period size: 48 Copynumber: 2.0 Consensus size: 48
72326887 GGTGCTTATA
* * **
72326897 TTTTGATTCTATATTTATATTTAATCTAATTTTTATTATTTATTTTAG
1 TTTTGATTCTATATTTATATTTAATCTAATTTTGATAATGAATTTTAG
* * *
72326945 TTTTGATTCTATATTTTTATTTTATTTTAA-TTTGATAATGAATTTT
1 TTTTGATTCTATATTTATA-TTTAATCTAATTTTGATAATGAATTTT
72326991 TAATAGAAAA
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
48 30 0.79
49 8 0.21
ACGTcount: A:0.27, C:0.03, G:0.05, T:0.65
Consensus pattern (48 bp):
TTTTGATTCTATATTTATATTTAATCTAATTTTGATAATGAATTTTAG
Found at i:72327188 original size:43 final size:43
Alignment explanation
Indices: 72327108--72327252 Score: 167
Period size: 43 Copynumber: 3.5 Consensus size: 43
72327098 TTTAAAATTT
* *
72327108 CATGA-CTTTTAGCAGCATTTGTGGAAAAAGCGCCGCTAAAGGC
1 CATGACCTTTTAGCGGC-GTTGTGGAAAAAGCGCCGCTAAAGGC
* * *
72327151 CATAACCTTTTAGCGGCGTTGTGGGAAAAGCGTCGCTAAAGG-
1 CATGACCTTTTAGCGGCGTTGTGGAAAAAGCGCCGCTAAAGGC
* *
72327193 C--GA-CTTTTAGTGGCGTTTGTGGTAAAAGCGCCGCTAAAGGC
1 CATGACCTTTTAGCGGCG-TTGTGGAAAAAGCGCCGCTAAAGGC
72327234 CATGACC-TTTAGCGGCGTT
1 CATGACCTTTTAGCGGCGTT
72327253 TTTTTCAAAT
Statistics
Matches: 86, Mismatches: 10, Indels: 13
0.79 0.09 0.12
Matches are distributed among these distances:
39 11 0.13
40 23 0.27
41 1 0.01
42 3 0.03
43 37 0.43
44 11 0.13
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.26
Consensus pattern (43 bp):
CATGACCTTTTAGCGGCGTTGTGGAAAAAGCGCCGCTAAAGGC
Found at i:72328820 original size:21 final size:21
Alignment explanation
Indices: 72328794--72328833 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
72328784 CATGTTTGAC
72328794 TGTTGTTATTA-CTGCATGCCA
1 TGTTGTTATTATCTG-ATGCCA
72328815 TGTTGTTATTATCTGATGC
1 TGTTGTTATTATCTGATGC
72328834 ATGGGATTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.17, C:0.15, G:0.20, T:0.47
Consensus pattern (21 bp):
TGTTGTTATTATCTGATGCCA
Found at i:72330290 original size:25 final size:27
Alignment explanation
Indices: 72330253--72330305 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
72330243 TCAAACATGC
72330253 ATTTAGGTCAATTTAACT-CTAGGGGT
1 ATTTAGGTCAATTTAACTACTAGGGGT
* *
72330279 ATTTCGGT-AATTTATCTACTAGGGGT
1 ATTTAGGTCAATTTAACTACTAGGGGT
72330305 A
1 A
72330306 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.26, C:0.11, G:0.23, T:0.40
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTACTAGGGGT
Found at i:72331824 original size:26 final size:26
Alignment explanation
Indices: 72331773--72331878 Score: 162
Period size: 25 Copynumber: 4.2 Consensus size: 26
72331763 TGAAATTCTC
*
72331773 ATCATCGAACATTTA-CTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
72331798 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
** *
72331824 ATCATTCAACA-TTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
72331849 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
72331875 ATCA
1 ATCA
72331879 ATTTGTATCA
Statistics
Matches: 72, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
25 36 0.50
26 36 0.50
ACGTcount: A:0.37, C:0.27, G:0.05, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:72331849 original size:51 final size:51
Alignment explanation
Indices: 72331780--72331878 Score: 173
Period size: 51 Copynumber: 1.9 Consensus size: 51
72331770 CTCATCATCG
*
72331780 AACATTTACTAACCCATTATCATGGAACATTTACCTAACCCATTATCATTC
1 AACATTTACTAAACCATTATCATGGAACATTTACCTAACCCATTATCATTC
72331831 AACA-TTACCTAAACCATTATCATGGAACATTTACCTAACCCATTATCA
1 AACATTTA-CTAAACCATTATCATGGAACATTTACCTAACCCATTATCA
72331879 ATTTGTATCA
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
50 3 0.07
51 43 0.93
ACGTcount: A:0.37, C:0.27, G:0.04, T:0.31
Consensus pattern (51 bp):
AACATTTACTAAACCATTATCATGGAACATTTACCTAACCCATTATCATTC
Found at i:72337355 original size:25 final size:27
Alignment explanation
Indices: 72337318--72337370 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
72337308 TCAAACATAC
72337318 ATTTAGGTCAATTTAACT-CTAGGGGT
1 ATTTAGGTCAATTTAACTACTAGGGGT
* *
72337344 ATTTCGGT-AATTTATCTACTAGGGGT
1 ATTTAGGTCAATTTAACTACTAGGGGT
72337370 A
1 A
72337371 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.26, C:0.11, G:0.23, T:0.40
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTACTAGGGGT
Found at i:72338887 original size:26 final size:26
Alignment explanation
Indices: 72338857--72338938 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
72338847 TGAAATTCCC
72338857 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
72338883 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
72338909 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
72338935 ATCA
1 ATCA
72338939 ATTTGTATCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.37, C:0.27, G:0.06, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:72346031 original size:114 final size:114
Alignment explanation
Indices: 72345831--72346059 Score: 449
Period size: 114 Copynumber: 2.0 Consensus size: 114
72345821 TATAATTATC
72345831 AATACAAAATCAGGATTAATCTTAAACTTTATTCTTGATTCATTATTCATGTTTATCTTTTTAAC
1 AATACAAAATCAGGATTAATCTTAAACTTTATTCTTGATTCATTATTCATGTTTATCTTTTTAAC
72345896 CAAGTTTATGTTGTTTATGAGATCCATGAGGAACTAATCTCCTTATGGG
66 CAAGTTTATGTTGTTTATGAGATCCATGAGGAACTAATCTCCTTATGGG
*
72345945 AATACAAAATCAGGATTAGTCTTAAACTTTATTCTTGATTCATTATTCATGTTTATCTTTTTAAC
1 AATACAAAATCAGGATTAATCTTAAACTTTATTCTTGATTCATTATTCATGTTTATCTTTTTAAC
72346010 CAAGTTTATGTTGTTTATGAGATCCATGAGGAACTAATCTCCTTATGGG
66 CAAGTTTATGTTGTTTATGAGATCCATGAGGAACTAATCTCCTTATGGG
72346059 A
1 A
72346060 GATTAACGAG
Statistics
Matches: 114, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
114 114 1.00
ACGTcount: A:0.31, C:0.14, G:0.14, T:0.42
Consensus pattern (114 bp):
AATACAAAATCAGGATTAATCTTAAACTTTATTCTTGATTCATTATTCATGTTTATCTTTTTAAC
CAAGTTTATGTTGTTTATGAGATCCATGAGGAACTAATCTCCTTATGGG
Found at i:72346805 original size:19 final size:20
Alignment explanation
Indices: 72346778--72346817 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
72346768 GTAAATACAC
* *
72346778 ATATGTTTATAAT-TGATCA
1 ATATATTTAAAATATGATCA
72346797 ATATATTTAAAATATGATCA
1 ATATATTTAAAATATGATCA
72346817 A
1 A
72346818 CATCAAATCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.45, C:0.05, G:0.07, T:0.42
Consensus pattern (20 bp):
ATATATTTAAAATATGATCA
Found at i:72348844 original size:25 final size:24
Alignment explanation
Indices: 72348797--72348845 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
72348787 TAATATTGTC
*
72348797 GGATACATAGATAAAAAAGTTCAT
1 GGATACATAGATAAAAAAATTCAT
72348821 GGATACATAGATAAAAAAAATTCAT
1 GGATACATAGAT-AAAAAAATTCAT
72348846 AAAATATAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 12 0.52
25 11 0.48
ACGTcount: A:0.53, C:0.08, G:0.14, T:0.24
Consensus pattern (24 bp):
GGATACATAGATAAAAAAATTCAT
Found at i:72349490 original size:44 final size:44
Alignment explanation
Indices: 72349440--72349527 Score: 167
Period size: 44 Copynumber: 2.0 Consensus size: 44
72349430 TGAGGTTTTA
72349440 TATGTCAAAGGCACTGACAATATTATTCCTAATTATCTTAGCAG
1 TATGTCAAAGGCACTGACAATATTATTCCTAATTATCTTAGCAG
*
72349484 TATGTCAAAGGCACTGACAATATTATTGCTAATTATCTTAGCAG
1 TATGTCAAAGGCACTGACAATATTATTCCTAATTATCTTAGCAG
72349528 ACCTTATGGA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Consensus pattern (44 bp):
TATGTCAAAGGCACTGACAATATTATTCCTAATTATCTTAGCAG
Found at i:72350049 original size:43 final size:43
Alignment explanation
Indices: 72349968--72350060 Score: 125
Period size: 43 Copynumber: 2.2 Consensus size: 43
72349958 AGTTGTGGTT
* *
72349968 GCTTCCTTTTTTGTTGTTTCTTGGTTGTGGTCGCTTCCACGTTA
1 GCTTCCTTTTTTGTCGTTTCTTGGTAGTGGTCGCTTCCACG-TA
***
72350012 -CTTCCTTTTTTGTCGTTTCTTGGTAGTGGTTTTTTCCACGTA
1 GCTTCCTTTTTTGTCGTTTCTTGGTAGTGGTCGCTTCCACGTA
72350054 GCTTCCT
1 GCTTCCT
72350061 CTGTCTTTTA
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
42 2 0.05
43 41 0.95
ACGTcount: A:0.05, C:0.22, G:0.20, T:0.53
Consensus pattern (43 bp):
GCTTCCTTTTTTGTCGTTTCTTGGTAGTGGTCGCTTCCACGTA
Found at i:72358869 original size:45 final size:44
Alignment explanation
Indices: 72358796--72358905 Score: 105
Period size: 45 Copynumber: 2.5 Consensus size: 44
72358786 CATGGTGTCT
* * * *
72358796 TTCAACCGTGGTCTTACTCAT-TTATATCAAGACATCATAGCATC
1 TTCAACCATGGTTTTACTCATCCT-TATCAAGACACCATAGCATC
* * * ***
72358840 TTTCAGCTATGGTTTTACTCATCCTTATCATGGTGCCATAGCATC
1 -TTCAACCATGGTTTTACTCATCCTTATCAAGACACCATAGCATC
72358885 TTCAACCATGGTTTTACTCAT
1 TTCAACCATGGTTTTACTCAT
72358906 TTTTAGGCAT
Statistics
Matches: 52, Mismatches: 12, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
44 19 0.37
45 32 0.62
46 1 0.02
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.38
Consensus pattern (44 bp):
TTCAACCATGGTTTTACTCATCCTTATCAAGACACCATAGCATC
Found at i:72360538 original size:42 final size:42
Alignment explanation
Indices: 72360490--72360571 Score: 121
Period size: 42 Copynumber: 1.9 Consensus size: 42
72360480 TTTTATCCCA
* *
72360490 GAAAAAAGAATTTA-AAAAGAGGATAAGATAATCTTGGGTTGTT
1 GAAAAAAGAATTTACAAAA-A-GAGAAGATAAACTTGGGTTGTT
72360533 GAAAAAAGAATTTACAAAAAGAGAAGATAAACTTGGGTT
1 GAAAAAAGAATTTACAAAAAGAGAAGATAAACTTGGGTT
72360572 ATTGGATTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
42 17 0.47
43 15 0.42
44 4 0.11
ACGTcount: A:0.50, C:0.04, G:0.22, T:0.24
Consensus pattern (42 bp):
GAAAAAAGAATTTACAAAAAGAGAAGATAAACTTGGGTTGTT
Found at i:72363887 original size:36 final size:36
Alignment explanation
Indices: 72363840--72363913 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
72363830 ATCATATTTC
*
72363840 ATTTGTTTTACAAATATCTCAATTCTGATACTTACT
1 ATTTGTTTTACAAATATCTCAATTCTCATACTTACT
72363876 ATTTGTTTTACAAATATCTCAATTCTCATACTTACT
1 ATTTGTTTTACAAATATCTCAATTCTCATACTTACT
72363912 AT
1 AT
72363914 ATAAATAACT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.31, C:0.18, G:0.04, T:0.47
Consensus pattern (36 bp):
ATTTGTTTTACAAATATCTCAATTCTCATACTTACT
Found at i:72365205 original size:12 final size:12
Alignment explanation
Indices: 72365188--72365257 Score: 60
Period size: 12 Copynumber: 6.2 Consensus size: 12
72365178 TTCTCCTTTC
72365188 TTTCTTTCTCTT
1 TTTCTTTCTCTT
*
72365200 TTTCTTTTTCATT
1 TTTCTTTCTC-TT
* *
72365213 TTGC-TTCTCTG
1 TTTCTTTCTCTT
72365224 TTTCTTTCT-TT
1 TTTCTTTCTCTT
*
72365235 TTT-TTTCT-AT
1 TTTCTTTCTCTT
72365245 TTTCTTT-TCTT
1 TTTCTTTCTCTT
72365256 TT
1 TT
72365258 ATTTCTTTGT
Statistics
Matches: 46, Mismatches: 8, Indels: 9
0.73 0.13 0.14
Matches are distributed among these distances:
10 10 0.22
11 14 0.30
12 17 0.37
13 5 0.11
ACGTcount: A:0.03, C:0.19, G:0.03, T:0.76
Consensus pattern (12 bp):
TTTCTTTCTCTT
Found at i:72365262 original size:21 final size:21
Alignment explanation
Indices: 72365224--72365263 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
72365214 TGCTTCTCTG
*
72365224 TTTCTTTCTTTTTTTTTCTAT
1 TTTCTTTCTTTTTATTTCTAT
72365245 TTTCTTT-TCTTTTATTTCT
1 TTTCTTTCT-TTTTATTTCT
72365264 TTGTTTTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.05, C:0.15, G:0.00, T:0.80
Consensus pattern (21 bp):
TTTCTTTCTTTTTATTTCTAT
Found at i:72371860 original size:70 final size:70
Alignment explanation
Indices: 72371770--72371923 Score: 188
Period size: 70 Copynumber: 2.2 Consensus size: 70
72371760 ACCTATAGTT
* * * * *
72371770 CAAATTCAATAGAATATCACATATAGTTGAATATGCACATTCAAGT-TAACTTCATATAT-GACC
1 CAAATTCAATATAATATCACATATAATCGAATATGCAAATTCAA-TATAACTTCACATATAG-CC
72371833 GAATATA
64 GAATATA
* *
72371840 CAAATTCAATATAA-ACTCACATATAATCGAATATTCAAATTCAATATAACTTCACATGTAGCCG
1 CAAATTCAATATAATA-TCACATATAATCGAATATGCAAATTCAATATAACTTCACATATAGCCG
72371904 AATATA
65 AATATA
*
72371910 CAAGTTCAATATAA
1 CAAATTCAATATAA
72371924 GCTTACATGT
Statistics
Matches: 73, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
69 2 0.03
70 70 0.96
71 1 0.01
ACGTcount: A:0.45, C:0.17, G:0.08, T:0.31
Consensus pattern (70 bp):
CAAATTCAATATAATATCACATATAATCGAATATGCAAATTCAATATAACTTCACATATAGCCGA
ATATA
Found at i:72371871 original size:35 final size:36
Alignment explanation
Indices: 72371817--72371931 Score: 137
Period size: 35 Copynumber: 3.3 Consensus size: 36
72371807 CATTCAAGTT
* *
72371817 AACTTCATATATGACCGAATATACAAATTCAATATA
1 AACTTCACATATAACCGAATATACAAATTCAATATA
* *
72371853 AAC-TCACATATAATCGAATATTCAAATTCAATAT-
1 AACTTCACATATAACCGAATATACAAATTCAATATA
* * *
72371887 AACTTCACATGTAGCCGAATATACAAGTTCAATATA
1 AACTTCACATATAACCGAATATACAAATTCAATATA
*
72371923 AGCTT-ACAT
1 AACTTCACAT
72371932 GTACTTACCC
Statistics
Matches: 67, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
34 3 0.04
35 57 0.85
36 7 0.10
ACGTcount: A:0.44, C:0.18, G:0.07, T:0.30
Consensus pattern (36 bp):
AACTTCACATATAACCGAATATACAAATTCAATATA
Found at i:72378884 original size:8 final size:8
Alignment explanation
Indices: 72378871--72378895 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
72378861 CAATAATATT
72378871 ACACATTA
1 ACACATTA
72378879 ACACATTA
1 ACACATTA
72378887 ACACATTA
1 ACACATTA
72378895 A
1 A
72378896 GATACCTTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.24, G:0.00, T:0.24
Consensus pattern (8 bp):
ACACATTA
Found at i:72379183 original size:35 final size:35
Alignment explanation
Indices: 72379093--72379246 Score: 104
Period size: 35 Copynumber: 4.4 Consensus size: 35
72379083 ACCTATAGTT
* *
72379093 CAAATTCAATAGAATA-TCACATATCG-CCGAATATG
1 CAAATTCAATATAA-ACTCACATAT-GACCGAATATA
* *
72379128 CACATTCAAGT-T-AACTTCACATATGACCGAATACA
1 CAAATTCAA-TATAAAC-TCACATATGACCGAATATA
* * ** *
72379163 CAAATTCAATATAAACTCACATGTAATTGAATATT
1 CAAATTCAATATAAACTCACATATGACCGAATATA
* *
72379198 CAAATTCAATATAACCTCAC--ATGCAGCCAAATATA
1 CAAATTCAATATAAACTCACATATG-A-CCGAATATA
*
72379233 CAAGTTCAATATAA
1 CAAATTCAATATAA
72379247 GCTTACATGT
Statistics
Matches: 92, Mismatches: 19, Indels: 16
0.72 0.15 0.13
Matches are distributed among these distances:
33 2 0.02
34 4 0.04
35 82 0.89
36 4 0.04
ACGTcount: A:0.44, C:0.21, G:0.08, T:0.27
Consensus pattern (35 bp):
CAAATTCAATATAAACTCACATATGACCGAATATA
Found at i:72382260 original size:33 final size:33
Alignment explanation
Indices: 72382223--72382292 Score: 83
Period size: 33 Copynumber: 2.1 Consensus size: 33
72382213 TATTTATACA
72382223 ATTATAATATT-TTATT-TAAATT-AGTAGATATTT
1 ATTAT-ATATTATTATTAT-AATTAAG-AGATATTT
*
72382256 ATTATTTATTATTATTATAATTAAGAGATATTT
1 ATTATATATTATTATTATAATTAAGAGATATTT
72382289 ATTA
1 ATTA
72382293 ATTAAATAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
32 4 0.12
33 26 0.79
34 3 0.09
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (33 bp):
ATTATATATTATTATTATAATTAAGAGATATTT
Found at i:72382314 original size:33 final size:33
Alignment explanation
Indices: 72382212--72382314 Score: 82
Period size: 33 Copynumber: 3.0 Consensus size: 33
72382202 TGTAATGATA
* * *
72382212 ATATTTATACAATTATAATATTTTATTTAAATTAGTAG
1 ATATTTAT-TAATTATAATA-ATTA--TAAATAAG-AG
* * * *
72382250 ATATTTATTATTTATTATTATTATAATTAAGAG
1 ATATTTATTAATTATAATAATTATAAATAAGAG
72382283 ATATTTATTAATTA-AATAATTATAAAATAAGA
1 ATATTTATTAATTATAATAATTAT-AAATAAGA
72382315 TTTTTATGTG
Statistics
Matches: 53, Mismatches: 11, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
32 7 0.13
33 22 0.42
34 6 0.11
36 3 0.06
37 7 0.13
38 8 0.15
ACGTcount: A:0.46, C:0.01, G:0.05, T:0.49
Consensus pattern (33 bp):
ATATTTATTAATTATAATAATTATAAATAAGAG
Found at i:72383551 original size:6 final size:6
Alignment explanation
Indices: 72383540--72383566 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
72383530 ATGTGCCGAC
72383540 TACTGT TACTGT TACTGT TACTGT TAC
1 TACTGT TACTGT TACTGT TACTGT TAC
72383567 CGATTCGACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.48
Consensus pattern (6 bp):
TACTGT
Found at i:72383596 original size:45 final size:45
Alignment explanation
Indices: 72383546--72383649 Score: 156
Period size: 45 Copynumber: 2.3 Consensus size: 45
72383536 CGACTACTGT
*
72383546 TACTGTTACTGTTACTGTTACCGATTC-GACACTTTATATGTCGAA
1 TACTGTTACTGTTACTGTTACAGATTCAG-CACTTTATATGTCGAA
* * *
72383591 TACTGTTACTGTTACTGTTACAGATTCAGCACTTTGTGTGTTGAA
1 TACTGTTACTGTTACTGTTACAGATTCAGCACTTTATATGTCGAA
72383636 TACTGTTACTGTTA
1 TACTGTTACTGTTA
72383650 TTGCTACTAC
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
45 53 0.98
46 1 0.02
ACGTcount: A:0.23, C:0.17, G:0.17, T:0.42
Consensus pattern (45 bp):
TACTGTTACTGTTACTGTTACAGATTCAGCACTTTATATGTCGAA
Found at i:72386968 original size:19 final size:19
Alignment explanation
Indices: 72386944--72386981 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
72386934 TATACCGAAT
72386944 TAATTGTTGAGATATTAAC
1 TAATTGTTGAGATATTAAC
72386963 TAATTGTTGAGATATTAAC
1 TAATTGTTGAGATATTAAC
72386982 CATTACACGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.05, G:0.16, T:0.42
Consensus pattern (19 bp):
TAATTGTTGAGATATTAAC
Found at i:72387135 original size:29 final size:30
Alignment explanation
Indices: 72387060--72387172 Score: 88
Period size: 29 Copynumber: 3.9 Consensus size: 30
72387050 TGATATCCAC
* * *
72387060 CACCGATACATAGTACCTAGAAA-TAT-AT
1 CACCAATACATAGTACTTGGAAACTATAAT
* * * * *
72387088 CACCGACATAGAGTGCTTGGAAACTATAA-
1 CACCAATACATAGTACTTGGAAACTATAAT
*
72387117 CACCAATACATAGTACTTGGAAACTGTAAT
1 CACCAATACATAGTACTTGGAAACTATAAT
*** *
72387147 CACTGGTACATAGTACCTGGAAACTA
1 CACCAATACATAGTACTTGGAAACTA
72387173 ATATCAACGG
Statistics
Matches: 65, Mismatches: 17, Indels: 4
0.76 0.20 0.05
Matches are distributed among these distances:
28 17 0.26
29 26 0.40
30 22 0.34
ACGTcount: A:0.39, C:0.21, G:0.16, T:0.24
Consensus pattern (30 bp):
CACCAATACATAGTACTTGGAAACTATAAT
Found at i:72394274 original size:28 final size:28
Alignment explanation
Indices: 72394242--72394299 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
72394232 AAATGTTGGA
*
72394242 AAATTTTCTAAGTTTCCCAAATTTTGCT
1 AAATTTTCTAAGTTTCCCAAAGTTTGCT
72394270 AAATTTTCTAAGTTTCCCAAAGTTTGCT
1 AAATTTTCTAAGTTTCCCAAAGTTTGCT
72394298 AA
1 AA
72394300 TGTTATCAGT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.31, C:0.17, G:0.09, T:0.43
Consensus pattern (28 bp):
AAATTTTCTAAGTTTCCCAAAGTTTGCT
Found at i:72396644 original size:26 final size:26
Alignment explanation
Indices: 72396615--72396687 Score: 76
Period size: 26 Copynumber: 2.8 Consensus size: 26
72396605 TCTCATCCCA
*
72396615 ATTTTACCCCTAGCAAAATTTTG-TCG
1 ATTTTACCCCTAGTAAAATTTTGAT-G
* * *
72396641 ATTTTAGCCTTGGTAAAATTTTGATG
1 ATTTTACCCCTAGTAAAATTTTGATG
* *
72396667 ATTTTTCCCCAAGTAAAATTT
1 ATTTTACCCCTAGTAAAATTT
72396688 CTAGAAAATA
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
26 36 0.97
27 1 0.03
ACGTcount: A:0.29, C:0.16, G:0.12, T:0.42
Consensus pattern (26 bp):
ATTTTACCCCTAGTAAAATTTTGATG
Found at i:72396853 original size:6 final size:6
Alignment explanation
Indices: 72396835--72396884 Score: 55
Period size: 6 Copynumber: 8.3 Consensus size: 6
72396825 TGCAAATGGA
* * * * *
72396835 TCATTT ACATTT TCGTTT TCATTT TCATTT ACATTT CCATTT CCATTT
1 TCATTT TCATTT TCATTT TCATTT TCATTT TCATTT TCATTT TCATTT
72396883 TC
1 TC
72396885 GGAAACCTAT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.18, C:0.22, G:0.02, T:0.58
Consensus pattern (6 bp):
TCATTT
Found at i:72396859 original size:12 final size:12
Alignment explanation
Indices: 72396835--72396884 Score: 64
Period size: 12 Copynumber: 4.2 Consensus size: 12
72396825 TGCAAATGGA
72396835 TCATTTACATTT
1 TCATTTACATTT
* *
72396847 TCGTTTTCATTT
1 TCATTTACATTT
72396859 TCATTTACATTT
1 TCATTTACATTT
* *
72396871 CCATTTCCATTT
1 TCATTTACATTT
72396883 TC
1 TC
72396885 GGAAACCTAT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.18, C:0.22, G:0.02, T:0.58
Consensus pattern (12 bp):
TCATTTACATTT
Found at i:72396863 original size:24 final size:24
Alignment explanation
Indices: 72396835--72396884 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
72396825 TGCAAATGGA
* * *
72396835 TCATTTACATTTTCGTTTTCATTT
1 TCATTTACATTTCCATTTCCATTT
72396859 TCATTTACATTTCCATTTCCATTT
1 TCATTTACATTTCCATTTCCATTT
72396883 TC
1 TC
72396885 GGAAACCTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.18, C:0.22, G:0.02, T:0.58
Consensus pattern (24 bp):
TCATTTACATTTCCATTTCCATTT
Found at i:72398891 original size:27 final size:27
Alignment explanation
Indices: 72398861--72398924 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 27
72398851 TTGCCTTGTA
*
72398861 TTTACTAG-CCCAACGGACTATACCGTG
1 TTTACT-GTCCCAACGGACTATACCATG
* * *
72398888 TTTAGTGTCCCATCGGACTATCCCATG
1 TTTACTGTCCCAACGGACTATACCATG
*
72398915 TTTAGTGTCC
1 TTTACTGTCC
72398925 TATTAGACTA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 1 0.03
27 31 0.97
ACGTcount: A:0.20, C:0.28, G:0.19, T:0.33
Consensus pattern (27 bp):
TTTACTGTCCCAACGGACTATACCATG
Found at i:72398933 original size:27 final size:27
Alignment explanation
Indices: 72398876--72398936 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
72398866 TAGCCCAACG
* * *
72398876 GACTATACCGTGTTTAGTGTCCCATCG
1 GACTATCCCATGTTTAGTGTCCCATCA
* *
72398903 GACTATCCCATGTTTAGTGTCCTATTA
1 GACTATCCCATGTTTAGTGTCCCATCA
72398930 GACTATC
1 GACTATC
72398937 TATGATGTCG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (27 bp):
GACTATCCCATGTTTAGTGTCCCATCA
Found at i:72399230 original size:44 final size:43
Alignment explanation
Indices: 72399142--72399231 Score: 108
Period size: 44 Copynumber: 2.1 Consensus size: 43
72399132 TCTGGCATGC
* * *
72399142 TTTCATATGATGCCATAACATCTTTCAGCTATGGTCTTACTCA
1 TTTCATATGATGCCATAACATCTTTCAGCTACGCTCCTACTCA
* * * *
72399185 TTTCATCATGATGCCATAGCATCTTTTAGTTACGCTCCTATTCA
1 TTTCAT-ATGATGCCATAACATCTTTCAGCTACGCTCCTACTCA
72399229 TTT
1 TTT
72399232 TAGGCGTATA
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
43 6 0.15
44 33 0.85
ACGTcount: A:0.23, C:0.23, G:0.11, T:0.42
Consensus pattern (43 bp):
TTTCATATGATGCCATAACATCTTTCAGCTACGCTCCTACTCA
Found at i:72400027 original size:19 final size:19
Alignment explanation
Indices: 72399987--72400031 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 19
72399977 ATATAAAATT
* *
72399987 TTATTTT-ATTTTTATAAA
1 TTATTTTGAATTTTAAAAA
72400005 -TATTTTGAATTTTAAAAA
1 TTATTTTGAATTTTAAAAA
72400023 TTATTTTGA
1 TTATTTTGA
72400032 TTTATTTTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 6 0.26
18 9 0.39
19 8 0.35
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (19 bp):
TTATTTTGAATTTTAAAAA
Found at i:72406312 original size:18 final size:18
Alignment explanation
Indices: 72406280--72406317 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
72406270 ATATAAAAAT
*
72406280 TTTAGAAATATATAT-AA
1 TTTAGAAAAATATATGAA
72406297 TTTAGAAAAATAATATGAA
1 TTTAGAAAAAT-ATATGAA
72406316 TT
1 TT
72406318 ATAAAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 10 0.56
18 4 0.22
19 4 0.22
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (18 bp):
TTTAGAAAAATATATGAA
Found at i:72406813 original size:26 final size:28
Alignment explanation
Indices: 72406773--72406828 Score: 71
Period size: 26 Copynumber: 2.1 Consensus size: 28
72406763 TATCTAAATA
**
72406773 TTTAATATTATAATTTTCTATTTCTATT
1 TTTAATATTATAATTTAATATTTCTATT
*
72406801 TTTAAT-TTA-AATTTAATATTTTTATT
1 TTTAATATTATAATTTAATATTTCTATT
72406827 TT
1 TT
72406829 AAGTAGATCT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 16 0.64
27 3 0.12
28 6 0.24
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.66
Consensus pattern (28 bp):
TTTAATATTATAATTTAATATTTCTATT
Found at i:72407463 original size:4 final size:5
Alignment explanation
Indices: 72407444--72407483 Score: 55
Period size: 5 Copynumber: 7.8 Consensus size: 5
72407434 ATTAAAAATC
72407444 TTATT TTATT TT-TAT TTATT TTATT TTATT TTGATT TTAT
1 TTATT TTATT TTAT-T TTATT TTATT TTATT TT-ATT TTAT
72407484 ATTAAATTAG
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
4 1 0.03
5 25 0.78
6 6 0.19
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.78
Consensus pattern (5 bp):
TTATT
Found at i:72407464 original size:15 final size:14
Alignment explanation
Indices: 72407444--72407474 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 14
72407434 ATTAAAAATC
72407444 TTATTTTATTTTTAT
1 TTATTTTA-TTTTAT
72407459 TTATTTTATTTTAT
1 TTATTTTATTTTAT
72407473 TT
1 TT
72407475 TGATTTTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.50
15 8 0.50
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (14 bp):
TTATTTTATTTTAT
Found at i:72408708 original size:21 final size:21
Alignment explanation
Indices: 72408653--72408701 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
72408643 AAGTGTAAAA
* *
72408653 AATAAAA-AAATTTAATAATT
1 AATAAAAGAAATATAAAAATT
*
72408673 TATAAAAGAAATATAAAAATT
1 AATAAAAGAAATATAAAAATT
72408694 AATAAAAG
1 AATAAAAG
72408702 GCATATATGA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 6 0.25
21 18 0.75
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (21 bp):
AATAAAAGAAATATAAAAATT
Found at i:72411401 original size:27 final size:29
Alignment explanation
Indices: 72411352--72411417 Score: 100
Period size: 28 Copynumber: 2.3 Consensus size: 29
72411342 GGTAGTACAC
72411352 AAAATTAAATATTTTTAACAAAAAA-ATT
1 AAAATTAAATATTTTTAACAAAAAATATT
* *
72411380 ATAATTAAAT-TTTTTAACAAAAAATGTT
1 AAAATTAAATATTTTTAACAAAAAATATT
72411408 AAAATTAAAT
1 AAAATTAAAT
72411418 GACCTGAATC
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
27 14 0.41
28 20 0.59
ACGTcount: A:0.58, C:0.03, G:0.02, T:0.38
Consensus pattern (29 bp):
AAAATTAAATATTTTTAACAAAAAATATT
Found at i:72424126 original size:22 final size:23
Alignment explanation
Indices: 72424101--72424143 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
72424091 AAAAAGTTAC
72424101 AAAATATTAATT-AAATTATTTT
1 AAAATATTAATTAAAATTATTTT
* *
72424123 AAAATTTTTATTAAAATTATT
1 AAAATATTAATTAAAATTATT
72424144 AACAGATGGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (23 bp):
AAAATATTAATTAAAATTATTTT
Found at i:72424771 original size:30 final size:31
Alignment explanation
Indices: 72424719--72424776 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
72424709 GGTCACTGAA
*
72424719 CTATTTAAAAGTTTTCATTTAAGTCATTAAG
1 CTATTCAAAAGTTTTCATTTAAGTCATTAAG
72424750 CTATTCAAAAGTTTT-ATTTAAGTCATT
1 CTATTCAAAAGTTTTCATTTAAGTCATT
72424777 GGTCTGTTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
30 12 0.46
31 14 0.54
ACGTcount: A:0.34, C:0.10, G:0.09, T:0.47
Consensus pattern (31 bp):
CTATTCAAAAGTTTTCATTTAAGTCATTAAG
Found at i:72433780 original size:47 final size:47
Alignment explanation
Indices: 72433726--72433817 Score: 148
Period size: 47 Copynumber: 2.0 Consensus size: 47
72433716 ATTAAATTAA
* * * *
72433726 CCATTATTAGTAGGTTTGGTTTCATTTAAGTCATGCATATATATACG
1 CCATTATTAGCAGGTTTAGCTTCATTTAAGTCACGCATATATATACG
72433773 CCATTATTAGCAGGTTTAGCTTCATTTAAGTCACGCATATATATA
1 CCATTATTAGCAGGTTTAGCTTCATTTAAGTCACGCATATATATA
72433818 TTAATGCATA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 41 1.00
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.40
Consensus pattern (47 bp):
CCATTATTAGCAGGTTTAGCTTCATTTAAGTCACGCATATATATACG
Found at i:72433892 original size:57 final size:53
Alignment explanation
Indices: 72433786--72433933 Score: 167
Period size: 52 Copynumber: 2.7 Consensus size: 53
72433776 TTATTAGCAG
* *
72433786 GTTTAGCTTCATTTAAGTCA--CGCATATATATATTAATGCATATATATATTGTTTTAT
1 GTTTAGCTTCATTTAAGTCATGCACATATATATATTAATGCA-ATATATA-----TTAC
* *
72433843 GTTTAGCTTCATTTAAGTTATGCACATATATATATTAATGC-ATATATATTCC
1 GTTTAGCTTCATTTAAGTCATGCACATATATATATTAATGCAATATATATTAC
*
72433895 GTTTAGCTTCATTTAAGTCATGCATATATATTATATTAA
1 GTTTAGCTTCATTTAAGTCATGCACATATA-TATATTAA
72433934 ATATAAAAAC
Statistics
Matches: 82, Mismatches: 6, Indels: 10
0.84 0.06 0.10
Matches are distributed among these distances:
52 30 0.37
53 8 0.10
57 26 0.32
59 18 0.22
ACGTcount: A:0.32, C:0.11, G:0.10, T:0.46
Consensus pattern (53 bp):
GTTTAGCTTCATTTAAGTCATGCACATATATATATTAATGCAATATATATTAC
Found at i:72434757 original size:22 final size:22
Alignment explanation
Indices: 72434723--72434778 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 22
72434713 TTACTCAATT
**
72434723 ATAAGTTTCGTTAATATATTCG
1 ATAAGTTAAGTTAATATATTCG
* **
72434745 ATAAGTTAAGTTAGTATATTTT
1 ATAAGTTAAGTTAATATATTCG
72434767 ATAAG-TAAGTTA
1 ATAAGTTAAGTTA
72434779 CTCCATTATT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 7 0.24
22 22 0.76
ACGTcount: A:0.38, C:0.04, G:0.14, T:0.45
Consensus pattern (22 bp):
ATAAGTTAAGTTAATATATTCG
Found at i:72437747 original size:22 final size:21
Alignment explanation
Indices: 72437704--72437745 Score: 57
Period size: 23 Copynumber: 1.9 Consensus size: 21
72437694 CATGTAATTA
*
72437704 TTTAGTAGTAAATTATATTTG
1 TTTAGTAGTAAATAATATTTG
72437725 TTTATGTAGTTAAATAATATT
1 TTTA-GTAG-TAAATAATATT
72437746 GTACTTTGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 4 0.22
23 10 0.56
ACGTcount: A:0.36, C:0.00, G:0.12, T:0.52
Consensus pattern (21 bp):
TTTAGTAGTAAATAATATTTG
Found at i:72444246 original size:22 final size:22
Alignment explanation
Indices: 72444198--72444268 Score: 74
Period size: 22 Copynumber: 3.3 Consensus size: 22
72444188 CGGTGGTTGA
* *
72444198 CGATGGTCGGTGGT-G-ACTTA
1 CGATGGTCGGTAGTGGAACTTG
72444218 CGATGGTCGGTAGTGGAACTTG
1 CGATGGTCGGTAGTGGAACTTG
* * * *
72444240 CGGTGGTTGGTGGTGGAATTTG
1 CGATGGTCGGTAGTGGAACTTG
72444262 CGATGGT
1 CGATGGT
72444269 AAGATAACTG
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 13 0.31
21 1 0.02
22 28 0.67
ACGTcount: A:0.14, C:0.11, G:0.44, T:0.31
Consensus pattern (22 bp):
CGATGGTCGGTAGTGGAACTTG
Found at i:72448675 original size:48 final size:48
Alignment explanation
Indices: 72448617--72448711 Score: 154
Period size: 48 Copynumber: 2.0 Consensus size: 48
72448607 CACATAGTAA
* *
72448617 GATGCCAATGCCATATCCCAGATATGGTCTTACATAGGATCACATATT
1 GATGCCAATGCCATATCCCAGACATGGTCTTAAATAGGATCACATATT
* *
72448665 GATGCCAATGCCATGTCCCAGACATGGTCTTAAATGGGATCACATAT
1 GATGCCAATGCCATATCCCAGACATGGTCTTAAATAGGATCACATAT
72448712 GGTCTTACTG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (48 bp):
GATGCCAATGCCATATCCCAGACATGGTCTTAAATAGGATCACATATT
Found at i:72448725 original size:21 final size:22
Alignment explanation
Indices: 72448688--72448732 Score: 74
Period size: 21 Copynumber: 2.1 Consensus size: 22
72448678 TGTCCCAGAC
72448688 ATGGTCTTAAATGGGATCACAT
1 ATGGTCTTAAATGGGATCACAT
*
72448710 ATGGTCTT-ACTGGGATCACAT
1 ATGGTCTTAAATGGGATCACAT
72448731 AT
1 AT
72448733 CGATGCCAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 14 0.64
22 8 0.36
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (22 bp):
ATGGTCTTAAATGGGATCACAT
Found at i:72448750 original size:69 final size:70
Alignment explanation
Indices: 72448638--72448776 Score: 235
Period size: 69 Copynumber: 2.0 Consensus size: 70
72448628 CATATCCCAG
* *
72448638 ATATGGTCTTACATAGGATCACATATTGATGCCAATGCCATGTCCCAGACATGGTCTTAAATGGG
1 ATATGGTCTTACATAGGATCACATATCGATGCCAATGCCATGTCCCAGACATAGTCTTAAATGGG
72448703 ATCAC
66 ATCAC
* *
72448708 ATATGGTCTTAC-TGGGATCACATATCGATGCCAATGCCATGTCCCAGACATAGTCTTACATGGG
1 ATATGGTCTTACATAGGATCACATATCGATGCCAATGCCATGTCCCAGACATAGTCTTAAATGGG
72448772 ATCAC
66 ATCAC
72448777 GTATCGATGC
Statistics
Matches: 65, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
69 53 0.82
70 12 0.18
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (70 bp):
ATATGGTCTTACATAGGATCACATATCGATGCCAATGCCATGTCCCAGACATAGTCTTAAATGGG
ATCAC
Found at i:72448764 original size:117 final size:117
Alignment explanation
Indices: 72448617--72448828 Score: 352
Period size: 117 Copynumber: 1.8 Consensus size: 117
72448607 CACATAGTAA
* * *
72448617 GATGCCAATGCCATATCCCAGATATGGTCTTACATAGGATCACATATTGATGCCAATGCCATGTC
1 GATGCCAATGCCATATCCCAGACATAGTCTTACATAGGATCACATATCGATGCCAATGCCATGTC
72448682 CCAGACATGGTCTTAAATGGGATCACATATGGTCTTACTGGGATCACATATC
66 CCAGACATGGTCTTAAATGGGATCACATATGGTCTTACTGGGATCACATATC
* * * *
72448734 GATGCCAATGCCATGTCCCAGACATAGTCTTACATGGGATCACGTATCGATGCCAATGTCATGTC
1 GATGCCAATGCCATATCCCAGACATAGTCTTACATAGGATCACATATCGATGCCAATGCCATGTC
*
72448799 CCAGACATGGTCTTACATGGGATCACATAT
66 CCAGACATGGTCTTAAATGGGATCACATAT
72448829 CAATGCCAAT
Statistics
Matches: 87, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
117 87 1.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.27
Consensus pattern (117 bp):
GATGCCAATGCCATATCCCAGACATAGTCTTACATAGGATCACATATCGATGCCAATGCCATGTC
CCAGACATGGTCTTAAATGGGATCACATATGGTCTTACTGGGATCACATATC
Found at i:72448782 original size:48 final size:48
Alignment explanation
Indices: 72448710--72448876 Score: 282
Period size: 48 Copynumber: 3.5 Consensus size: 48
72448700 GGGATCACAT
*
72448710 ATGGTCTTAC-TGGGATCACATATCGATGCCAATGCCATGTCCCAGAC
1 ATGGTCTTACATGGGATCACATATCGATGCCAATGTCATGTCCCAGAC
* *
72448757 ATAGTCTTACATGGGATCACGTATCGATGCCAATGTCATGTCCCAGAC
1 ATGGTCTTACATGGGATCACATATCGATGCCAATGTCATGTCCCAGAC
* *
72448805 ATGGTCTTACATGGGATCACATATCAATGCCAATGTCATGTTCCAGAC
1 ATGGTCTTACATGGGATCACATATCGATGCCAATGTCATGTCCCAGAC
72448853 ATGGTCTTACATGGGATCACATAT
1 ATGGTCTTACATGGGATCACATAT
72448877 AACTCTAATG
Statistics
Matches: 112, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
47 9 0.08
48 103 0.92
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (48 bp):
ATGGTCTTACATGGGATCACATATCGATGCCAATGTCATGTCCCAGAC
Found at i:72455135 original size:48 final size:48
Alignment explanation
Indices: 72455066--72455205 Score: 235
Period size: 48 Copynumber: 2.9 Consensus size: 48
72455056 TAGGGTTATG
* *
72455066 TGTGATCCCATGTAAGACCATGTCTGGGGCATGGCATTGGCATTGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* *
72455114 TGTGATCCCATGTAAGACCATGTCTAGGACATGGCATTAGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
*
72455162 AGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
72455206 TTACTATGTG
Statistics
Matches: 85, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 85 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
Found at i:72457350 original size:18 final size:18
Alignment explanation
Indices: 72457323--72457358 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
72457313 TAAATATCTC
*
72457323 GGTCGGACTACTCTTCAT
1 GGTCGAACTACTCTTCAT
72457341 GGTCGAACTACTCTTCAT
1 GGTCGAACTACTCTTCAT
72457359 TGTTGGACTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.19, C:0.28, G:0.19, T:0.33
Consensus pattern (18 bp):
GGTCGAACTACTCTTCAT
Found at i:72464292 original size:3 final size:3
Alignment explanation
Indices: 72464284--72464443 Score: 114
Period size: 3 Copynumber: 53.3 Consensus size: 3
72464274 TCTAAAAAGA
* * *
72464284 AAT AAT AAT AAT AAT -AG AAT AAT AAT -AG AAT AAAG AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT
* * * *
72464328 ACATT AAT AAT AAT AAT AAT AGT AGT AA- AGAC AAT AAT AAT AAG AAT
1 A-A-T AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT
* * * * * *
72464375 GAT AAT AAT AAT ACT ACT ACT AAT AAT AAT AGT AAT AAT AGT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
72464423 AAT AGAT -TT AAT AAT AA- AAT A
1 AAT A-AT AAT AAT AAT AAT AAT A
72464444 GCCAAAATGA
Statistics
Matches: 126, Mismatches: 21, Indels: 20
0.75 0.13 0.12
Matches are distributed among these distances:
2 6 0.05
3 111 0.88
4 7 0.06
5 2 0.02
ACGTcount: A:0.60, C:0.03, G:0.07, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:72469011 original size:26 final size:26
Alignment explanation
Indices: 72468975--72469082 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
72468965 TGAAATTCCA
72468975 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
72469001 ATCATGGAACATTTACCTAACTCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
72469027 ATCATGAAACATTTACCTAACTCATT
1 ATCATGGAACATTTACCTAACCCATT
72469053 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
72469079 ATCA
1 ATCA
72469083 ATTTGTATCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:72470445 original size:6 final size:6
Alignment explanation
Indices: 72470435--72470467 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
72470425 TATCTTATTT
*
72470435 TTCTAT TTCTAG TTCTAG TTCTAG TTCTAG TTC
1 TTCTAG TTCTAG TTCTAG TTCTAG TTCTAG TTC
72470468 ATAGCCTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.15, C:0.18, G:0.12, T:0.55
Consensus pattern (6 bp):
TTCTAG
Found at i:72476849 original size:14 final size:14
Alignment explanation
Indices: 72476830--72476856 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
72476820 GCTTTTAGTT
72476830 TAATTTTTCTTTTC
1 TAATTTTTCTTTTC
72476844 TAATTTTTCTTTT
1 TAATTTTTCTTTT
72476857 GTTTGGTTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.11, G:0.00, T:0.74
Consensus pattern (14 bp):
TAATTTTTCTTTTC
Found at i:72480956 original size:30 final size:30
Alignment explanation
Indices: 72480922--72480982 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
72480912 TCCTTAACTC
72480922 AAACTTTTGAAAAATTACAATTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
* * * *
72480952 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
72480982 A
1 A
72480983 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTTGAAAAATTACAATTTTGCCCCT
Found at i:72483122 original size:46 final size:46
Alignment explanation
Indices: 72483070--72483388 Score: 457
Period size: 46 Copynumber: 7.0 Consensus size: 46
72483060 TGATGTCATA
* * *
72483070 GTATCTTTCAACTATAGTCTTATTCATTTTC-TGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTATTCA-TTTCATATCATGTTGCCATG
* * * *
72483116 GTATCTTTCAACCATGGTCGTGTTCATTTCATGTCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTATTCATTTCATATCATGTTGCCATG
*
72483162 GTATCTTTCAACCATGGTCTTATTCATTTCATATCATGTTGCCATA
1 GTATCTTTCAACCATGGTCTTATTCATTTCATATCATGTTGCCATG
* *
72483208 GTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTATTCATTTCATATCATGTTGCCATG
72483254 GTATCTTTCAACCATGGTCTTATTCATTTTC-TATCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTATTCA-TTTCATATCATGTTGCCATG
** *
72483300 GTATCTTTCAACCATGGTCTTACACATTTCATATCATGATGCCATG
1 GTATCTTTCAACCATGGTCTTATTCATTTCATATCATGTTGCCATG
* *
72483346 GTATCTTTCAACCATGATCTTA--CATTTAATATCATGTTGCCAT
1 GTATCTTTCAACCATGGTCTTATTCATTTCATATCATGTTGCCAT
72483389 TGTAACAGCC
Statistics
Matches: 249, Mismatches: 21, Indels: 8
0.90 0.08 0.03
Matches are distributed among these distances:
44 19 0.08
45 8 0.03
46 218 0.88
47 4 0.02
ACGTcount: A:0.22, C:0.22, G:0.13, T:0.42
Consensus pattern (46 bp):
GTATCTTTCAACCATGGTCTTATTCATTTCATATCATGTTGCCATG
Done.