Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 219 of 255
Found at i:72985255 original size:18 final size:18
Alignment explanation
Indices: 72985221--72985258 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
72985211 ATCGAAAATC
*
72985221 AATTGAATAAACCAATTA
1 AATTGAATAAACAAATTA
72985239 AATTGAATATAA-AAATTA
1 AATTGAATA-AACAAATTA
72985257 AA
1 AA
72985259 AAACTGAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 16 0.89
19 2 0.11
ACGTcount: A:0.61, C:0.05, G:0.05, T:0.29
Consensus pattern (18 bp):
AATTGAATAAACAAATTA
Found at i:72986238 original size:12 final size:12
Alignment explanation
Indices: 72986221--72986246 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
72986211 ACATCGAGAG
72986221 AGAAAAAAAAGA
1 AGAAAAAAAAGA
72986233 AGAAAAAAAAGA
1 AGAAAAAAAAGA
72986245 AG
1 AG
72986247 GGACTTCAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (12 bp):
AGAAAAAAAAGA
Found at i:72993731 original size:42 final size:42
Alignment explanation
Indices: 72993634--72993731 Score: 135
Period size: 42 Copynumber: 2.3 Consensus size: 42
72993624 TCATTGTATT
*
72993634 TTTTAGTGTTTTAATTGTTTAATTAAGGTTTATTAAATTAGGG
1 TTTTAGTGTTTTAATTG-TTAATTAAGGTTTATTAAATTAAGG
* * *
72993677 TTTTATTCTTTTAATTAG-TATTTAAGGTTTATTAAATTAAGG
1 TTTTAGTGTTTTAATT-GTTAATTAAGGTTTATTAAATTAAGG
72993719 TTTTAGTGTTTTA
1 TTTTAGTGTTTTA
72993732 TTTAATTTTT
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
42 33 0.69
43 14 0.29
44 1 0.02
ACGTcount: A:0.28, C:0.01, G:0.15, T:0.56
Consensus pattern (42 bp):
TTTTAGTGTTTTAATTGTTAATTAAGGTTTATTAAATTAAGG
Found at i:72993750 original size:42 final size:42
Alignment explanation
Indices: 72993634--72993773 Score: 122
Period size: 42 Copynumber: 3.3 Consensus size: 42
72993624 TCATTGTATT
** * * *
72993634 TTTTAGTGTTTTAATTGTTTAATTAAGGTTTATTAAATTAGGG
1 TTTTAGTGTTTTAATT-AATATTTAAGATTTATTAAATTAAGG
* * * *
72993677 TTTTATTCTTTTAATTAGTATTTAAGGTTTATTAAATTAAGG
1 TTTTAGTGTTTTAATTAATATTTAAGATTTATTAAATTAAGG
* * **
72993719 TTTTAGTGTTTTATTTAATTTTTATTATTTATT-AATT-AGTG
1 TTTTAGTGTTTTAATTAATATTTAAGATTTATTAAATTAAG-G
*
72993760 TTTTAGGGTTTTAA
1 TTTTAGTGTTTTAA
72993774 GAAAAATAAT
Statistics
Matches: 80, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
40 2 0.03
41 17 0.21
42 47 0.59
43 14 0.17
ACGTcount: A:0.27, C:0.01, G:0.14, T:0.58
Consensus pattern (42 bp):
TTTTAGTGTTTTAATTAATATTTAAGATTTATTAAATTAAGG
Found at i:72995062 original size:18 final size:18
Alignment explanation
Indices: 72995039--72995073 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
72995029 CAGGGGAAAG
*
72995039 AAAGAAGGAAGGAAAAAA
1 AAAGAAAGAAGGAAAAAA
72995057 AAAGAAAGAAGGAAAAA
1 AAAGAAAGAAGGAAAAA
72995074 GGGAAAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (18 bp):
AAAGAAAGAAGGAAAAAA
Found at i:72997181 original size:46 final size:46
Alignment explanation
Indices: 72997129--72997311 Score: 303
Period size: 46 Copynumber: 4.0 Consensus size: 46
72997119 GTGTGCTCTC
** *
72997129 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACT
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
**
72997175 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
72997221 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
* *
72997267 TGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
72997312 ATGACAGAAA
Statistics
Matches: 132, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 132 1.00
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.22
Consensus pattern (46 bp):
TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
Found at i:72997317 original size:46 final size:46
Alignment explanation
Indices: 72997143--72997364 Score: 275
Period size: 46 Copynumber: 4.7 Consensus size: 46
72997133 ATGAAATGTG
* * * **
72997143 TAAGACCATGGTTGAAAGATACCATGGCAACTTGATATGAAATGTG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAAGAA
* * *
72997189 TAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAAGAA
*
72997235 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAAGAA
72997281 TAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAATGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAA-G-A--A
* * * *
72997330 GTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 -TAAGACCATGGTTGAAAGATACCATGGCAACATG
72997365 TCAAAGATAA
Statistics
Matches: 161, Mismatches: 10, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
45 5 0.03
46 124 0.77
47 1 0.01
49 1 0.01
50 30 0.19
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.21
Consensus pattern (46 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAAGAA
Found at i:72999946 original size:20 final size:20
Alignment explanation
Indices: 72999878--72999949 Score: 71
Period size: 20 Copynumber: 3.7 Consensus size: 20
72999868 TTTAACTATA
* *
72999878 ATTAAATTTAATTACTTTAAT
1 ATTAAA-TTAATAAATTTAAT
72999899 ATTAAATT--T-AATTTAAT
1 ATTAAATTAATAAATTTAAT
*
72999916 ATCAAGA-TAATAAATTTAAT
1 ATTAA-ATTAATAAATTTAAT
72999936 ATTAAATTAATAAA
1 ATTAAATTAATAAA
72999950 ATACTATTAA
Statistics
Matches: 43, Mismatches: 3, Indels: 11
0.75 0.05 0.19
Matches are distributed among these distances:
17 12 0.28
18 2 0.05
19 2 0.05
20 21 0.49
21 6 0.14
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.44
Consensus pattern (20 bp):
ATTAAATTAATAAATTTAAT
Found at i:73005049 original size:22 final size:22
Alignment explanation
Indices: 73004996--73005042 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
73004986 AGTAAAAAAA
* *
73004996 TTTAAGAAAGAATTTGAGATAT
1 TTTAAGAGAGGATTTGAGATAT
73005018 TTTAAGAGAGGATTTGAGATAT
1 TTTAAGAGAGGATTTGAGATAT
73005040 TTT
1 TTT
73005043 TTTAGAGTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.38, C:0.00, G:0.21, T:0.40
Consensus pattern (22 bp):
TTTAAGAGAGGATTTGAGATAT
Found at i:73005055 original size:24 final size:24
Alignment explanation
Indices: 73004996--73005049 Score: 67
Period size: 22 Copynumber: 2.3 Consensus size: 24
73004986 AGTAAAAAAA
* *
73004996 TTTAAGAAAGAATTTGAGATA--T
1 TTTAAGAGAGGATTTGAGATATTT
73005018 TTTAAGAGAGGATTTGAGATATTT
1 TTTAAGAGAGGATTTGAGATATTT
*
73005042 TTTTAGAG
1 TTTAAGAG
73005050 TTGATTGAGA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
22 19 0.70
24 8 0.30
ACGTcount: A:0.37, C:0.00, G:0.22, T:0.41
Consensus pattern (24 bp):
TTTAAGAGAGGATTTGAGATATTT
Found at i:73014736 original size:20 final size:20
Alignment explanation
Indices: 73014711--73014749 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
73014701 AAAAATACTA
73014711 TTTTTTTACTGTTTTCTTGC
1 TTTTTTTACTGTTTTCTTGC
*
73014731 TTTTTTTATTGTTTTCTTG
1 TTTTTTTACTGTTTTCTTG
73014750 TTGTTATTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.05, C:0.10, G:0.10, T:0.74
Consensus pattern (20 bp):
TTTTTTTACTGTTTTCTTGC
Found at i:73019400 original size:26 final size:26
Alignment explanation
Indices: 73019371--73019478 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
73019361 TGGTACAAAT
73019371 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* **
73019397 TGATAATGGATTAGGTAAATACTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
73019423 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
73019449 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
73019475 TGAT
1 TGAT
73019479 GGGCATTTCT
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:73023091 original size:12 final size:12
Alignment explanation
Indices: 73023074--73023100 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
73023064 TTTCCCTTTT
73023074 CTTTTTCTTTCC
1 CTTTTTCTTTCC
73023086 CTTTTTCTTTCC
1 CTTTTTCTTTCC
73023098 CTT
1 CTT
73023101 GTTTTGTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (12 bp):
CTTTTTCTTTCC
Found at i:73023185 original size:8 final size:8
Alignment explanation
Indices: 73023172--73023198 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
73023162 TAATAGTAAT
73023172 ATAATATA
1 ATAATATA
73023180 ATAATATA
1 ATAATATA
73023188 ATAATATA
1 ATAATATA
73023196 ATA
1 ATA
73023199 TTATTTTCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (8 bp):
ATAATATA
Found at i:73023186 original size:13 final size:13
Alignment explanation
Indices: 73023161--73023199 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 13
73023151 TCATTTAATT
73023161 ATAATAGTAATATA
1 ATAATA-TAATATA
73023175 AT-ATAATAATATA
1 ATAAT-ATAATATA
73023188 ATAATATAATAT
1 ATAATATAATAT
73023200 TATTTTCTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
13 18 0.78
14 5 0.22
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (13 bp):
ATAATATAATATA
Found at i:73029641 original size:13 final size:13
Alignment explanation
Indices: 73029623--73029648 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
73029613 AAGCATTGCA
73029623 TTTAATTAAAAGT
1 TTTAATTAAAAGT
73029636 TTTAATTAAAAGT
1 TTTAATTAAAAGT
73029649 ATTTTTCTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (13 bp):
TTTAATTAAAAGT
Found at i:73032126 original size:22 final size:23
Alignment explanation
Indices: 73032074--73032126 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
73032064 CTCATTGAGC
* *
73032074 TTAACAGGTAGCTCCGAAAGTTA
1 TTAACAGGGAGCTCCGAAAGTCA
73032097 TTAACAGGGAGCTCCGAATAG-CA
1 TTAACAGGGAGCTCCGAA-AGTCA
73032120 -TAACAGG
1 TTAACAGG
73032127 AAGTTCAAGC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
22 7 0.26
23 18 0.67
24 2 0.07
ACGTcount: A:0.36, C:0.19, G:0.25, T:0.21
Consensus pattern (23 bp):
TTAACAGGGAGCTCCGAAAGTCA
Found at i:73032174 original size:24 final size:24
Alignment explanation
Indices: 73032137--73032188 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
73032127 AAGTTCAAGC
73032137 GAGCCATGTCAGGA-AGCTCAT-AA
1 GAGCCATGTCAGGATA-CTCATGAA
*
73032160 GAGCCTATGTTAGGATACTCATGAA
1 GAGCC-ATGTCAGGATACTCATGAA
73032185 GAGC
1 GAGC
73032189 TGCGTTTGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
23 5 0.20
24 13 0.52
25 7 0.28
ACGTcount: A:0.33, C:0.19, G:0.27, T:0.21
Consensus pattern (24 bp):
GAGCCATGTCAGGATACTCATGAA
Found at i:73035594 original size:77 final size:78
Alignment explanation
Indices: 73035458--73035611 Score: 247
Period size: 77 Copynumber: 2.0 Consensus size: 78
73035448 TTATATTACC
* *
73035458 AGCACAAAGCCTGCAGGACTTTAGCCCAGATACATTTCCTGCACGAAGCCTACGGGACTTTAGCC
1 AGCACAAAGCCTGCAGGACTTTAGCCCAGATACATTTCCAGCACGAAGCCTACGAGACTTTAGCC
73035523 CGGATAAATTTCT
66 CGGATAAATTTCT
* * *
73035536 AGCACGAAGCCTGC-GGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGAGACTTTAGCC
1 AGCACAAAGCCTGCAGGACTTTAGCCCAGATACATTTCCAGCACGAAGCCTACGAGACTTTAGCC
*
73035600 CGGATACATTTC
66 CGGATAAATTTC
73035612 CAGTATCTTG
Statistics
Matches: 70, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
77 57 0.81
78 13 0.19
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (78 bp):
AGCACAAAGCCTGCAGGACTTTAGCCCAGATACATTTCCAGCACGAAGCCTACGAGACTTTAGCC
CGGATAAATTTCT
Found at i:73035613 original size:39 final size:39
Alignment explanation
Indices: 73035456--73035614 Score: 232
Period size: 39 Copynumber: 4.1 Consensus size: 39
73035446 AATTATATTA
* *
73035456 CCAGCACAAAGCCTGC-AGGACTTTAGCCCAGATACATTT
1 CCAGCACGAAGCCTGCGA-GACTTTAGCCCGGATACATTT
* * * *
73035495 CCTGCACGAAGCCTACGGGACTTTAGCCCGGATAAATTT
1 CCAGCACGAAGCCTGCGAGACTTTAGCCCGGATACATTT
*
73035534 CTAGCACGAAGCCTGCG-GACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGAGACTTTAGCCCGGATACATTT
73035572 CCAGCACGAAGCCTGCGAGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGAGACTTTAGCCCGGATACATTT
73035611 CCAG
1 CCAG
73035615 TATCTTGCAT
Statistics
Matches: 107, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
38 36 0.34
39 71 0.66
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.21
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGAGACTTTAGCCCGGATACATTT
Found at i:73036611 original size:34 final size:34
Alignment explanation
Indices: 73036545--73036623 Score: 86
Period size: 34 Copynumber: 2.3 Consensus size: 34
73036535 AAATAAATGT
* *
73036545 ATATATATATATTCACCTTCGGTGATATCAAACC
1 ATATATATATATTCACCTTCGATGATACCAAACC
* * * * *
73036579 ATATATATGTATTCACTTTTGATTATACCAAACT
1 ATATATATATATTCACCTTCGATGATACCAAACC
*
73036613 ATACATATATA
1 ATATATATATA
73036624 ATTATGTACT
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.38, C:0.16, G:0.06, T:0.39
Consensus pattern (34 bp):
ATATATATATATTCACCTTCGATGATACCAAACC
Found at i:73043789 original size:29 final size:29
Alignment explanation
Indices: 73043746--73044037 Score: 416
Period size: 29 Copynumber: 10.3 Consensus size: 29
73043736 GTGTACAATT
* *
73043746 TGAAAAGGGATAGCTTCGACTATCAAATG
1 TGAAAAGGGATAGCTTCGGCTATCGAATG
* *
73043775 CGAAAAGGGATAGCTTTGGCTATCGAATG
1 TGAAAAGGGATAGCTTCGGCTATCGAATG
73043804 TGAAAAGGGATAGCTTCGGCTATCGAATG
1 TGAAAAGGGATAGCTTCGGCTATCGAATG
* * *
73043833 TAAAAAAGGACAGCTTCGGCTATCGAATG
1 TGAAAAGGGATAGCTTCGGCTATCGAATG
*
73043862 TGAAAAAGGATAGCTTCGGCTATCGAATG
1 TGAAAAGGGATAGCTTCGGCTATCGAATG
*
73043891 TGAAAAGGGATA------GCTATCGAATT
1 TGAAAAGGGATAGCTTCGGCTATCGAATG
* *
73043914 TGAAAAGGGATAGCTTCGGCTATCGGACG
1 TGAAAAGGGATAGCTTCGGCTATCGAATG
*
73043943 TGAAAAGGGATAGCTTCGGCTATAGAATG
1 TGAAAAGGGATAGCTTCGGCTATCGAATG
*
73043972 TGAAAAGGGATAGCTTCGGCTATCAAATG
1 TGAAAAGGGATAGCTTCGGCTATCGAATG
*
73044001 TGAAAAGAGATAGCTTCGGCTATCGAATG
1 TGAAAAGGGATAGCTTCGGCTATCGAATG
73044030 TGAAAAGG
1 TGAAAAGG
73044038 AAAGGTATAC
Statistics
Matches: 233, Mismatches: 24, Indels: 12
0.87 0.09 0.04
Matches are distributed among these distances:
23 22 0.09
29 211 0.91
ACGTcount: A:0.35, C:0.13, G:0.29, T:0.23
Consensus pattern (29 bp):
TGAAAAGGGATAGCTTCGGCTATCGAATG
Found at i:73043910 original size:23 final size:23
Alignment explanation
Indices: 73043880--73043928 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
73043870 GATAGCTTCG
73043880 GCTATCGAATGTGAAAAGGGATA
1 GCTATCGAATGTGAAAAGGGATA
*
73043903 GCTATCGAATTTGAAAAGGGATA
1 GCTATCGAATGTGAAAAGGGATA
73043926 GCT
1 GCT
73043929 TCGGCTATCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.37, C:0.10, G:0.29, T:0.24
Consensus pattern (23 bp):
GCTATCGAATGTGAAAAGGGATA
Found at i:73043958 original size:110 final size:110
Alignment explanation
Indices: 73043746--73044015 Score: 378
Period size: 110 Copynumber: 2.4 Consensus size: 110
73043736 GTGTACAATT
* *
73043746 TGAAAAGGGATAGCTTCGACTATCAAATGCGAAAAGGGATAGCTTTGGCTATCGAATGTGAAAAG
1 TGAAAAGGGATAGCTTCGGCTATCAAATGTGAAAAGGGATA------GCTATCGAATGTGAAAAG
* *
73043811 GGATAGCTTCGGCTATCGAATGTAAAAAAGGACAGCTTCGGCTATCGAATG
60 GGATAGCTTCGGCTATCGAACGTAAAAAAGGACAGCTTCGGCTATAGAATG
* * *
73043862 TGAAAAAGGATAGCTTCGGCTATCGAATGTGAAAAGGGATAGCTATCGAATTTGAAAAGGGATAG
1 TGAAAAGGGATAGCTTCGGCTATCAAATGTGAAAAGGGATAGCTATCGAATGTGAAAAGGGATAG
* * * *
73043927 CTTCGGCTATCGGACGTGAAAAGGGATAGCTTCGGCTATAGAATG
66 CTTCGGCTATCGAACGTAAAAAAGGACAGCTTCGGCTATAGAATG
*
73043972 TGAAAAGGGATAGCTTCGGCTATCAAATGTGAAAAGAGATAGCT
1 TGAAAAGGGATAGCTTCGGCTATCAAATGTGAAAAGGGATAGCT
73044016 TCGGCTATCG
Statistics
Matches: 140, Mismatches: 14, Indels: 6
0.88 0.09 0.04
Matches are distributed among these distances:
110 103 0.74
116 37 0.26
ACGTcount: A:0.35, C:0.13, G:0.29, T:0.23
Consensus pattern (110 bp):
TGAAAAGGGATAGCTTCGGCTATCAAATGTGAAAAGGGATAGCTATCGAATGTGAAAAGGGATAG
CTTCGGCTATCGAACGTAAAAAAGGACAGCTTCGGCTATAGAATG
Found at i:73044015 original size:139 final size:139
Alignment explanation
Indices: 73043776--73044037 Score: 436
Period size: 139 Copynumber: 1.9 Consensus size: 139
73043766 TATCAAATGC
* * *
73043776 GAAAAGGGATAGCTTTGGCTATCGAATGTGAAAAGGGATAGCTTCGGCTATCGAATGTAAAAAAG
1 GAAAAGGGATAGCTTCGGCTATCGAACGTGAAAAGGGATAGCTTCGGCTATAGAATGTAAAAAAG
*
73043841 GACAGCTTCGGCTATCGAATGTGAAAAAGGATAGCTTCGGCTATCGAATGTGAAAAGGGATAGCT
66 GACAGCTTCGGCTATCAAATGTGAAAAAGGATAGCTTCGGCTATCGAATGTGAAAAGGGATAGCT
73043906 ATCGAATTT
131 ATCGAATTT
* * *
73043915 GAAAAGGGATAGCTTCGGCTATCGGACGTGAAAAGGGATAGCTTCGGCTATAGAATGTGAAAAGG
1 GAAAAGGGATAGCTTCGGCTATCGAACGTGAAAAGGGATAGCTTCGGCTATAGAATGTAAAAAAG
*
73043980 GATAGCTTCGGCTATCAAATGTG-AAAAGAGATAGCTTCGGCTATCGAATGTGAAAAGG
66 GACAGCTTCGGCTATCAAATGTGAAAAAG-GATAGCTTCGGCTATCGAATGTGAAAAGG
73044038 AAAGGTATAC
Statistics
Matches: 114, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
138 5 0.04
139 109 0.96
ACGTcount: A:0.34, C:0.13, G:0.29, T:0.23
Consensus pattern (139 bp):
GAAAAGGGATAGCTTCGGCTATCGAACGTGAAAAGGGATAGCTTCGGCTATAGAATGTAAAAAAG
GACAGCTTCGGCTATCAAATGTGAAAAAGGATAGCTTCGGCTATCGAATGTGAAAAGGGATAGCT
ATCGAATTT
Found at i:73044073 original size:33 final size:33
Alignment explanation
Indices: 73044030--73044193 Score: 213
Period size: 33 Copynumber: 5.0 Consensus size: 33
73044020 CTATCGAATG
73044030 TGAAAAGGAAAGGTATACTTTGTGTATACCACT
1 TGAAAAGGAAAGGTATACTTTGTGTATACCACT
* * *
73044063 AGAAAAGGAAATGTATACTTTGTGTATACCATT
1 TGAAAAGGAAAGGTATACTTTGTGTATACCACT
* * * *
73044096 TGAAAAGGATATGTACACTTTGTGTGTA-CACT
1 TGAAAAGGAAAGGTATACTTTGTGTATACCACT
* ** *
73044128 TGGAAAGGTTAGGTATACTTTGTGTATACCATT
1 TGAAAAGGAAAGGTATACTTTGTGTATACCACT
*
73044161 TGAAAAGGAAAGGTATACTTTGTGTGTACCACT
1 TGAAAAGGAAAGGTATACTTTGTGTATACCACT
73044194 CGGACAGAAA
Statistics
Matches: 111, Mismatches: 19, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
32 26 0.23
33 85 0.77
ACGTcount: A:0.34, C:0.11, G:0.22, T:0.34
Consensus pattern (33 bp):
TGAAAAGGAAAGGTATACTTTGTGTATACCACT
Found at i:73044152 original size:65 final size:65
Alignment explanation
Indices: 73044030--73044189 Score: 230
Period size: 65 Copynumber: 2.4 Consensus size: 65
73044020 CTATCGAATG
* *
73044030 TGAAAAGGAAAGGTATACTTTGTGTATACCACTAGAAAAGGAAATGTATACTTTGTGTATACCAT
1 TGAAAAGGAAAGGTATACTTTGTGTGTA-CACTAGAAAAGGAAAGGTATACTTTGTGTATACCAT
73044095 T
65 T
* * * * * **
73044096 TGAAAAGGATATGTACACTTTGTGTGTACACTTGGAAAGGTTAGGTATACTTTGTGTATACCATT
1 TGAAAAGGAAAGGTATACTTTGTGTGTACACTAGAAAAGGAAAGGTATACTTTGTGTATACCATT
73044161 TGAAAAGGAAAGGTATACTTTGTGTGTAC
1 TGAAAAGGAAAGGTATACTTTGTGTGTAC
73044190 CACTCGGACA
Statistics
Matches: 82, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
65 58 0.71
66 24 0.29
ACGTcount: A:0.34, C:0.10, G:0.23, T:0.34
Consensus pattern (65 bp):
TGAAAAGGAAAGGTATACTTTGTGTGTACACTAGAAAAGGAAAGGTATACTTTGTGTATACCATT
Found at i:73044233 original size:98 final size:99
Alignment explanation
Indices: 73044031--73044235 Score: 227
Period size: 98 Copynumber: 2.1 Consensus size: 99
73044021 TATCGAATGT
* *
73044031 GAAAAGGAAAGGTATACTTTGTGTATACCACTAGAAAAGGAAATGTATACTTTGTGTATACCATT
1 GAAAAGGAAAGGTATACTTTGTGTATACCACTAGAAAAGGAAAGGTATACTTTGTGTATACCACT
* * ** * * * *
73044096 TGAAAAGGATATGTACACTTTGTGTGTACACTTG
66 CGAAAAGGAAACATACACCTCGAGTGTACACTGG
** * * *
73044130 G-AAAGGTTAGGTATACTTTGTGTATACCATTTGAAAAGGAAAGGTATACTTTGTGTGTACCACT
1 GAAAAGGAAAGGTATACTTTGTGTATACCACTAGAAAAGGAAAGGTATACTTTGTGTATACCACT
* *
73044194 CGGACA-GAAACATACACCTCGAGTGTACAAC-GG
66 CGAAAAGGAAACATACACCTCGAGTGTAC-ACTGG
73044227 GAAAAGGAA
1 GAAAAGGAA
73044236 CTCAGAAATT
Statistics
Matches: 85, Mismatches: 19, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
97 18 0.21
98 66 0.78
99 1 0.01
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.28
Consensus pattern (99 bp):
GAAAAGGAAAGGTATACTTTGTGTATACCACTAGAAAAGGAAAGGTATACTTTGTGTATACCACT
CGAAAAGGAAACATACACCTCGAGTGTACACTGG
Found at i:73051023 original size:24 final size:25
Alignment explanation
Indices: 73050991--73051051 Score: 88
Period size: 24 Copynumber: 2.5 Consensus size: 25
73050981 AATTGTGAAT
* *
73050991 AAGTGTACATTTGGGATGTAAAA-A
1 AAGTATACAATTGGGATGTAAAACA
73051015 AAGTATACAATTGGGATGTAAAACA
1 AAGTATACAATTGGGATGTAAAACA
*
73051040 AAATATACAATT
1 AAGTATACAATT
73051052 TCGGAAAATT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
24 21 0.64
25 12 0.36
ACGTcount: A:0.48, C:0.07, G:0.18, T:0.28
Consensus pattern (25 bp):
AAGTATACAATTGGGATGTAAAACA
Found at i:73053270 original size:14 final size:14
Alignment explanation
Indices: 73053248--73053299 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 14
73053238 AATAATTTAG
*
73053248 AATCTAGAATAAAA
1 AATCGAGAATAAAA
* *
73053262 AATCGAGAATTAAT
1 AATCGAGAATAAAA
* *
73053276 AATTGAAAATAAAA
1 AATCGAGAATAAAA
*
73053290 AATTGAGAAT
1 AATCGAGAAT
73053300 TGAGAATTAA
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
14 30 1.00
ACGTcount: A:0.60, C:0.04, G:0.12, T:0.25
Consensus pattern (14 bp):
AATCGAGAATAAAA
Found at i:73059035 original size:46 final size:46
Alignment explanation
Indices: 73058968--73059062 Score: 190
Period size: 46 Copynumber: 2.1 Consensus size: 46
73058958 CCAAAATTCG
73058968 CCAAAAAACCATTCACGTCTTATGACACTATTGGATATAGACAATA
1 CCAAAAAACCATTCACGTCTTATGACACTATTGGATATAGACAATA
73059014 CCAAAAAACCATTCACGTCTTATGACACTATTGGATATAGACAATA
1 CCAAAAAACCATTCACGTCTTATGACACTATTGGATATAGACAATA
73059060 CCA
1 CCA
73059063 TTCACGTCTT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 49 1.00
ACGTcount: A:0.41, C:0.23, G:0.11, T:0.25
Consensus pattern (46 bp):
CCAAAAAACCATTCACGTCTTATGACACTATTGGATATAGACAATA
Found at i:73061556 original size:11 final size:11
Alignment explanation
Indices: 73061542--73061593 Score: 72
Period size: 11 Copynumber: 4.9 Consensus size: 11
73061532 TCTTTCAATA
73061542 TTCTCTCAAAT
1 TTCTCTCAAAT
73061553 TTCTCTCAAA-
1 TTCTCTCAAAT
73061563 -TCTCTCAAAT
1 TTCTCTCAAAT
*
73061573 TTCTCTTAAAT
1 TTCTCTCAAAT
*
73061584 TCCTCTCAAA
1 TTCTCTCAAA
73061594 AATCTCGTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
9 9 0.25
11 27 0.75
ACGTcount: A:0.29, C:0.29, G:0.00, T:0.42
Consensus pattern (11 bp):
TTCTCTCAAAT
Found at i:73061568 original size:20 final size:21
Alignment explanation
Indices: 73061536--73061593 Score: 82
Period size: 20 Copynumber: 2.7 Consensus size: 21
73061526 CTTCAATCTT
73061536 TCAATATTCTCTCAAATTTCTC
1 TCAA-ATTCTCTCAAATTTCTC
73061558 TCAAA-TCTCTCAAATTTCTC
1 TCAAATTCTCTCAAATTTCTC
*
73061578 TTAAATTCCTCTCAAA
1 TCAAATT-CTCTCAAA
73061594 AATCTCGTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
20 19 0.58
21 2 0.06
22 12 0.36
ACGTcount: A:0.31, C:0.28, G:0.00, T:0.41
Consensus pattern (21 bp):
TCAAATTCTCTCAAATTTCTC
Found at i:73061649 original size:16 final size:15
Alignment explanation
Indices: 73061620--73061650 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
73061610 TCAAAAAATC
*
73061620 TCTAATTTTATTTTT
1 TCTAAATTTATTTTT
73061635 TCTAAATTTATTTTT
1 TCTAAATTTATTTTT
73061650 T
1 T
73061651 AAAATAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.71
Consensus pattern (15 bp):
TCTAAATTTATTTTT
Found at i:73063414 original size:18 final size:18
Alignment explanation
Indices: 73063391--73063432 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
73063381 GCCAGGTACA
*
73063391 TATCCTAGCCCTTTTATG
1 TATCCTAGCCCTTATATG
73063409 TATCCTAGCCCTTATATG
1 TATCCTAGCCCTTATATG
*
73063427 TTTCCT
1 TATCCT
73063433 TTTTCTAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.17, C:0.29, G:0.10, T:0.45
Consensus pattern (18 bp):
TATCCTAGCCCTTATATG
Found at i:73064039 original size:54 final size:54
Alignment explanation
Indices: 73063866--73064166 Score: 207
Period size: 54 Copynumber: 5.3 Consensus size: 54
73063856 TAAAAGGTTG
* * *
73063866 TTTTAAATAAAGTAATTGTAATTTACTTTTATATTTTTAATAAAATGGAAATTA
1 TTTTAAATAAAGTAATTATAATTTATTTTTATATTTTTAATAAAATGAAAATTA
* * * * *
73063920 TTTTAAATAAGGCAAAATTTTGAA--TATTTTTATATTATTTCATGAATTAGAT-AAAAGGTTG
1 TTTTAAATAAAG--TAATTAT-AATTTATTTTTATATT-TTTAAT-AA--A-ATGAAAA--TTA
* * *
73063981 TTTTAAATAAAGTAATTGTAATTTATTTTTACATTTTTAATAAAATGGAAATTA
1 TTTTAAATAAAGTAATTATAATTTATTTTTATATTTTTAATAAAATGAAAATTA
* * * * * *
73064035 TTTTAAATAAGGCAACATTTTGAA--TATTTTTATATTATTTCATGTAATAATATAAAAGGTTG
1 TTTTAAATAAAG-TA-ATTAT-AATTTATTTTTATATT-TTT-A-ATAA-AAT-GAAAA--TTA
* *
73064097 TTTTAAATAAAGTGATTATAATTTACTTTTATATTTTTAATAAAATGAAAATTA
1 TTTTAAATAAAGTAATTATAATTTATTTTTATATTTTTAATAAAATGAAAATTA
*
73064151 TTTTAAATAAAATAAT
1 TTTTAAATAAAGTAAT
73064167 ATTTTGAATA
Statistics
Matches: 190, Mismatches: 32, Indels: 50
0.70 0.12 0.18
Matches are distributed among these distances:
54 40 0.21
55 25 0.13
56 25 0.13
57 10 0.05
58 10 0.05
59 20 0.11
60 23 0.12
61 24 0.13
62 13 0.07
ACGTcount: A:0.42, C:0.03, G:0.09, T:0.47
Consensus pattern (54 bp):
TTTTAAATAAAGTAATTATAATTTATTTTTATATTTTTAATAAAATGAAAATTA
Found at i:73064084 original size:61 final size:60
Alignment explanation
Indices: 73064018--73064203 Score: 174
Period size: 61 Copynumber: 3.1 Consensus size: 60
73064008 TTTACATTTT
* *
73064018 TAATAAAATGGAAATTATTTTAAATAAGGCAACATTTTGAATATTTTTATATTATTTCATG
1 TAATAAAATGAAAATTATTTTAAATAAAG-AACATTTTGAATATTTTTATATTATTTCATG
* * ** *
73064079 TAATAATAT-AAAAGGTTGTTTTAAATAAAG-TGATTAT-AAT-TTACTTT-TA-TATTT--T-
1 TAATAAAATGAAAA--TTATTTTAAATAAAGAACATTTTGAATATT--TTTATATTATTTCATG
* *
73064134 TAATAAAATGAAAATTATTTTAAATAAAATAATATTTTGAATATTTTTATATTATTTCATG
1 TAATAAAATGAAAATTATTTTAAAT-AAAGAACATTTTGAATATTTTTATATTATTTCATG
73064195 TAATAAAAT
1 TAATAAAAT
73064204 ATAAATAATA
Statistics
Matches: 98, Mismatches: 13, Indels: 28
0.71 0.09 0.20
Matches are distributed among these distances:
54 10 0.10
55 11 0.11
56 12 0.12
57 5 0.05
58 14 0.14
59 5 0.05
60 11 0.11
61 17 0.17
62 13 0.13
ACGTcount: A:0.44, C:0.03, G:0.08, T:0.46
Consensus pattern (60 bp):
TAATAAAATGAAAATTATTTTAAATAAAGAACATTTTGAATATTTTTATATTATTTCATG
Found at i:73064158 original size:116 final size:116
Alignment explanation
Indices: 73063817--73064200 Score: 626
Period size: 116 Copynumber: 3.3 Consensus size: 116
73063807 TATTTGTACA
* * *
73063817 AACATTTTGAATCTTTTTATATTATTTCATGAAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATAAGATAAAAGGTTGTTTTAAATAAAGTAAT
73063882 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
* *
73063933 AAAATTTTGAATATTTTTATATTATTTCATG-AATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATAAGATAAAAGGTTGTTTTAAATAAAGTAAT
* *
73063997 TGTAATTTATTTTTACATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
* *
73064048 AACATTTTGAATATTTTTATATTATTTCATGTAATAATATAAAAGGTTGTTTTAAATAAAGTGAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATAAGATAAAAGGTTGTTTTAAATAAAGTAAT
* * ***
73064113 TATAATTTACTTTTATATTTTTAATAAAATGAAAATTATTTTAAATAAAAT
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
*
73064164 AATATTTTGAATATTTTTATATTATTTCATGTAATAA
1 AACATTTTGAATATTTTTATATTATTTCATGTAATAA
73064201 AATATAAATA
Statistics
Matches: 251, Mismatches: 16, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
115 112 0.45
116 139 0.55
ACGTcount: A:0.41, C:0.03, G:0.09, T:0.47
Consensus pattern (116 bp):
AACATTTTGAATATTTTTATATTATTTCATGTAATAAGATAAAAGGTTGTTTTAAATAAAGTAAT
TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
Found at i:73067443 original size:126 final size:125
Alignment explanation
Indices: 73067222--73067504 Score: 458
Period size: 126 Copynumber: 2.3 Consensus size: 125
73067212 TTCAAAAACC
* * *
73067222 ACTGTAGCAAAAGAGCGTCCATGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCCTGCT
1 ACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCATGCT
* *
73067287 TGAAGCGTTTTTGCCACTATTTGCGCAGACACGTCTTCTCAAAATTATTTTTTCAGAGACT
66 TGAAGCGTTTTTGACACTATTTACGCAGACACGTCTTCTCAAAATTA-TTTTTCAGAGACT
* *
73067348 ACTGTAGCAAAAGAGCTTCCACGTGGAAGCTTCTTTCAGTACTTTTGCTGACAATGCATCATGCT
1 ACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCATGCT
* * *
73067413 TGAAGCGTTTTTGACACTATTTATGTAGACACGTCTTCTCAAATTTATTTTTCAGAGACT
66 TGAAGCGTTTTTGACACTATTTACGCAGACACGTCTTCTCAAAATTATTTTTCAGAGACT
*
73067473 ACTGTAGCAAAAGAGCGTCCACGTAGAAGCTT
1 ACTGTAGCAAAAGAGCGTCCACGTGGAAGCTT
73067505 TTTTAGATTA
Statistics
Matches: 145, Mismatches: 12, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
125 43 0.30
126 102 0.70
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (125 bp):
ACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCATGCT
TGAAGCGTTTTTGACACTATTTACGCAGACACGTCTTCTCAAAATTATTTTTCAGAGACT
Found at i:73067601 original size:15 final size:15
Alignment explanation
Indices: 73067581--73067610 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
73067571 TTTCTTAAAT
73067581 ACCCTAAAACCCTAA
1 ACCCTAAAACCCTAA
*
73067596 ACCCTAAAATCCTAA
1 ACCCTAAAACCCTAA
73067611 TCTAATTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.17
Consensus pattern (15 bp):
ACCCTAAAACCCTAA
Found at i:73067784 original size:96 final size:96
Alignment explanation
Indices: 73067585--73067790 Score: 256
Period size: 96 Copynumber: 2.1 Consensus size: 96
73067575 TTAAATACCC
* ** * **
73067585 TAAAACCCTAAACCCTAAAATCCTAATCTAATTTTTTTTAAATTTATAATTAATTTACTCAAGTA
1 TAAAACCCTAAACACTAAAATCCTAATCTAA-TTTTTTTAAAAATATAATTAATTTAATCAACAA
* *
73067650 ACCCTAAACCCTAATTTATTTGATTTTTTCCT
65 ACACTAAACCCTAATTTATTTAATTTTTTCCT
* *
73067682 TAAAAACCATAAACACT-AAA-CCATAATCTAA-TTTTTTAAAAATAGTAATTAATTTAATTAAC
1 T-AAAACCCTAAACACTAAAATCC-TAATCTAATTTTTTTAAAAATA-TAATTAATTTAATCAAC
73067744 AAACACTAAACCCTAATTTATTTAATTTTTTTCCT
63 AAACACTAAACCCTAATTTATTTAA-TTTTTTCCT
73067779 TAAAACCCTAAA
1 TAAAACCCTAAA
73067791 ATTTAAAAAC
Statistics
Matches: 94, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
95 11 0.12
96 48 0.51
97 22 0.23
98 13 0.14
ACGTcount: A:0.42, C:0.18, G:0.01, T:0.39
Consensus pattern (96 bp):
TAAAACCCTAAACACTAAAATCCTAATCTAATTTTTTTAAAAATATAATTAATTTAATCAACAAA
CACTAAACCCTAATTTATTTAATTTTTTCCT
Found at i:73067801 original size:16 final size:16
Alignment explanation
Indices: 73067780--73067817 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
73067770 TTTTTTCCTT
73067780 AAAACCCTAAAATT-TA
1 AAAACCC-AAAATTCTA
73067796 AAAACCCAAAATTCTA
1 AAAACCCAAAATTCTA
73067812 AAAACC
1 AAAACC
73067818 TTAACCCTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 6 0.29
16 15 0.71
ACGTcount: A:0.58, C:0.24, G:0.00, T:0.18
Consensus pattern (16 bp):
AAAACCCAAAATTCTA
Found at i:73069658 original size:19 final size:18
Alignment explanation
Indices: 73069609--73069658 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 18
73069599 TAAAACATAT
*
73069609 AAATTTTGGAATTTTATAA
1 AAATTTT-GAATTTTAAAA
* *
73069628 ATATTATGAATTTTAAAA
1 AAATTTTGAATTTTAAAA
73069646 ACAATTTTGAATT
1 A-AATTTTGAATT
73069659 ATTTTGTAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
18 11 0.44
19 14 0.56
ACGTcount: A:0.44, C:0.02, G:0.08, T:0.46
Consensus pattern (18 bp):
AAATTTTGAATTTTAAAA
Found at i:73070130 original size:29 final size:32
Alignment explanation
Indices: 73070096--73070165 Score: 83
Period size: 32 Copynumber: 2.3 Consensus size: 32
73070086 TTAATGTGTT
*
73070096 ATTATATACAT-AAATT-TTAATT-TGATGTA
1 ATTATATACATAAAATTCTAAATTGTGATGTA
* *
73070125 ATTATATACGTAAAATTCTAAATTGTGATTTA
1 ATTATATACATAAAATTCTAAATTGTGATGTA
*
73070157 AATATATAC
1 ATTATATAC
73070166 TCGAAACTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
29 10 0.29
30 5 0.15
31 5 0.15
32 14 0.41
ACGTcount: A:0.43, C:0.06, G:0.07, T:0.44
Consensus pattern (32 bp):
ATTATATACATAAAATTCTAAATTGTGATGTA
Found at i:73075348 original size:17 final size:19
Alignment explanation
Indices: 73075328--73075368 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
73075318 TAATAATAGT
73075328 AAAAACGA-AA-ACGAAAA
1 AAAAACGATAAGACGAAAA
*
73075345 AAAAA-GATAAGAGGAAAA
1 AAAAACGATAAGACGAAAA
73075363 AAAAAC
1 AAAAAC
73075369 TCAAAGACCT
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
16 2 0.10
17 7 0.35
18 11 0.55
ACGTcount: A:0.76, C:0.07, G:0.15, T:0.02
Consensus pattern (19 bp):
AAAAACGATAAGACGAAAA
Found at i:73076341 original size:45 final size:45
Alignment explanation
Indices: 73076284--73076629 Score: 293
Period size: 45 Copynumber: 7.6 Consensus size: 45
73076274 ACTACTGCTT
* * * *
73076284 AGGGAGATAAGATTTACTATCTT-TGATCTATTCCACTGTAACTTC
1 AGGGAGATAAGATCTACTATCTTCAG-TCTACTCCACTGCAACTTC
*
73076329 AGGGAGATAAGATCTACTATCTTCAGTCTGCTCCACTGCAACTTC
1 AGGGAGATAAGATCTACTATCTTCAGTCTACTCCACTGCAACTTC
* * ** ** *
73076374 AAGGAGATAAGACCTGTTA-CTTCAACCTGCTCCACTGCAACTTC
1 AGGGAGATAAGATCTACTATCTTCAGTCTACTCCACTGCAACTTC
** * * * * *
73076418 AAAGAGATAAGGTCTGCTATCTTCAGTCTACTCCGCTGTAACTTT
1 AGGGAGATAAGATCTACTATCTTCAGTCTACTCCACTGCAACTTC
* * * *
73076463 AGGGAGATAAGACCTGCTATCTTCAGTCTGCTGCACTGCAACTTC
1 AGGGAGATAAGATCTACTATCTTCAGTCTACTCCACTGCAACTTC
* * * * *
73076508 AGGGAGATAAGACCTGCTATCCTCAATCTGCTCCACTGCAACTTC
1 AGGGAGATAAGATCTACTATCTTCAGTCTACTCCACTGCAACTTC
* * * *
73076553 AGGGAGATAAGA-CTAGTAATTTGTAGCTTTAATCTGCTCCACTGCAACTTC
1 AGGGAGATAAGATCTACT-A----T--CTTCAGTCTACTCCACTGCAACTTC
* *
73076604 AGGGAGATAAGATTTGCTATCTTCAG
1 AGGGAGATAAGATCTACTATCTTCAG
73076630 CCCTCTTATT
Statistics
Matches: 249, Mismatches: 42, Indels: 20
0.80 0.14 0.06
Matches are distributed among these distances:
44 41 0.16
45 167 0.67
46 1 0.00
47 1 0.00
49 1 0.00
51 36 0.14
52 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.30
Consensus pattern (45 bp):
AGGGAGATAAGATCTACTATCTTCAGTCTACTCCACTGCAACTTC
Found at i:73076457 original size:134 final size:135
Alignment explanation
Indices: 73076310--73076563 Score: 393
Period size: 134 Copynumber: 1.9 Consensus size: 135
73076300 CTATCTTTGA
* *
73076310 TCTATTCCACTGTAACTTCAGGGAGATAAGATCTACTATCTTCAGTCTGCTCCACTGCAACTTCA
1 TCTACTCCACTGTAACTTCAGGGAGATAAGACCTACTATCTTCAGTCTGCTCCACTGCAACTTCA
* *
73076375 AGGAGATAAGACCTGTTA-CTTCAACCTGCTCCACTGCAACTTCAAAGAGATAAGGTCTGCTATC
66 AGGAGATAAGACCTGCTATCCTCAACCTGCTCCACTGCAACTTCAAAGAGATAAGGTCTGCTATC
73076439 TTCAG
131 TTCAG
* * * *
73076444 TCTACTCCGCTGTAACTTTAGGGAGATAAGACCTGCTATCTTCAGTCTGCTGCACTGCAACTTCA
1 TCTACTCCACTGTAACTTCAGGGAGATAAGACCTACTATCTTCAGTCTGCTCCACTGCAACTTCA
* * **
73076509 GGGAGATAAGACCTGCTATCCTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG
66 AGGAGATAAGACCTGCTATCCTCAACCTGCTCCACTGCAACTTCAAAGAGATAAG
73076564 ACTAGTAATT
Statistics
Matches: 107, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
134 75 0.70
135 32 0.30
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (135 bp):
TCTACTCCACTGTAACTTCAGGGAGATAAGACCTACTATCTTCAGTCTGCTCCACTGCAACTTCA
AGGAGATAAGACCTGCTATCCTCAACCTGCTCCACTGCAACTTCAAAGAGATAAGGTCTGCTATC
TTCAG
Found at i:73081735 original size:8 final size:8
Alignment explanation
Indices: 73081722--73081746 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
73081712 TTTTACATGA
73081722 TATTTTAT
1 TATTTTAT
73081730 TATTTTAT
1 TATTTTAT
73081738 TATTTTAT
1 TATTTTAT
73081746 T
1 T
73081747 TAGTATATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:73083942 original size:46 final size:46
Alignment explanation
Indices: 73083890--73084092 Score: 370
Period size: 46 Copynumber: 4.4 Consensus size: 46
73083880 TTTCTGAAAG
*
73083890 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATAT
1 GAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGATAT
73083936 GAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGATAT
1 GAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGATAT
73083982 GAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGATAT
1 GAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGATAT
* *
73084028 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAGGATAT
1 GAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGATAT
*
73084074 AAAATGTGTAAGACCATGG
1 GAAATGTGTAAGACCATGG
73084093 CAACATGATA
Statistics
Matches: 153, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 153 1.00
ACGTcount: A:0.39, C:0.14, G:0.25, T:0.22
Consensus pattern (46 bp):
GAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGATAT
Found at i:73084092 original size:30 final size:30
Alignment explanation
Indices: 73084056--73084122 Score: 116
Period size: 30 Copynumber: 2.2 Consensus size: 30
73084046 GTTGAAAGAT
73084056 ACCATGGCAACAGGATATAAAATGTGTAAG
1 ACCATGGCAACAGGATATAAAATGTGTAAG
* *
73084086 ACCATGGCAACATGATATGAAATGTGTAAG
1 ACCATGGCAACAGGATATAAAATGTGTAAG
73084116 ACCATGG
1 ACCATGG
73084123 TTGAAAGATA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (30 bp):
ACCATGGCAACAGGATATAAAATGTGTAAG
Found at i:73084095 original size:76 final size:76
Alignment explanation
Indices: 73084010--73084168 Score: 309
Period size: 76 Copynumber: 2.1 Consensus size: 76
73084000 GTTGAAAGAC
*
73084010 ACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAGGATATA
1 ACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAAGATATA
73084075 AAATGTGTAAG
66 AAATGTGTAAG
73084086 ACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAAGATATA
1 ACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAAGATATA
73084151 AAATGTGTAAG
66 AAATGTGTAAG
73084162 ACCATGG
1 ACCATGG
73084169 TTGAAAGATA
Statistics
Matches: 82, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
76 82 1.00
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.22
Consensus pattern (76 bp):
ACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAAGATATA
AAATGTGTAAG
Found at i:73084136 original size:46 final size:46
Alignment explanation
Indices: 73084086--73084328 Score: 301
Period size: 46 Copynumber: 5.3 Consensus size: 46
73084076 AATGTGTAAG
* *
73084086 ACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGAT
1 ACCATGGCAACATGACATGAAATGAGTAAGACCATGGTTGAAAGAT
* * * *
73084132 ACCATGGCAACAAGATATAAAATGTGTAAGACCATGGTTGAAAGAT
1 ACCATGGCAACATGACATGAAATGAGTAAGACCATGGTTGAAAGAT
* * * *
73084178 ACCATGGCAACATGAC-GGGAATGAATAAGACCATGATTGAAAGAT
1 ACCATGGCAACATGACATGAAATGAGTAAGACCATGGTTGAAAGAT
* * **
73084223 ACCATGGCAACGTAACATGAAATGAACAAGACCATGGTTGAAAGAT
1 ACCATGGCAACATGACATGAAATGAGTAAGACCATGGTTGAAAGAT
* *
73084269 ACCATGGCAACATGACA-GAAAATGAGTAAGACCATAGTTGAAAGAC
1 ACCATGGCAACATGACATG-AAATGAGTAAGACCATGGTTGAAAGAT
* *
73084315 ACTATGGCATCATG
1 ACCATGGCAACATG
73084329 TCAAAGATAA
Statistics
Matches: 171, Mismatches: 24, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
45 38 0.22
46 133 0.78
ACGTcount: A:0.42, C:0.16, G:0.23, T:0.20
Consensus pattern (46 bp):
ACCATGGCAACATGACATGAAATGAGTAAGACCATGGTTGAAAGAT
Found at i:73084136 original size:122 final size:130
Alignment explanation
Indices: 73083890--73084323 Score: 481
Period size: 122 Copynumber: 3.3 Consensus size: 130
73083880 TTTCTGAAAG
* * **
73083890 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCATGG
1 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC---A-ACGGAAT-AATAAGA-CAT-G
* *
73083955 TTGAAAGACACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAA
59 ATGAAAGA-ACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAA
73084020 CATGATAT
123 CATGATAT
*
73084028 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC-A-GG-AT-ATAA-A-ATG-TGTAAG
1 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAACGGAATAATAAGACATGATGAAAG
*
73084086 -ACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAAGATAT
66 AACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATAT
*
73084150 AAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAATGAATAAGACCATGAT
1 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA--AC-GGAAT-AATAAGA-CATGA-
* * * ***
73084215 TGAAAGATACCATGGCAACGTAACATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
60 TGAAAGA-ACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
73084280 ATGACA-
124 ATGATAT
* * * *
73084286 GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 G-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
73084324 TCATGTCAAA
Statistics
Matches: 260, Mismatches: 20, Indels: 33
0.83 0.06 0.11
Matches are distributed among these distances:
122 100 0.38
124 5 0.02
125 2 0.01
126 2 0.01
127 2 0.01
128 3 0.01
129 3 0.01
130 4 0.02
131 3 0.01
132 1 0.00
133 4 0.02
135 5 0.02
137 87 0.33
138 39 0.15
ACGTcount: A:0.41, C:0.15, G:0.24, T:0.21
Consensus pattern (130 bp):
GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAACGGAATAATAAGACATGATGAAAG
AACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATAT
Found at i:73084230 original size:91 final size:92
Alignment explanation
Indices: 73084086--73084323 Score: 286
Period size: 91 Copynumber: 2.6 Consensus size: 92
73084076 AATGTGTAAG
* ** * *
73084086 ACCATGGCAACATGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC-AAGATA
1 ACCATGGCAACATGACA-GAAAATGAATAAGACCATGATTGAAAGATACCATGGCAACGAA-ACA
***
73084149 TAAAATGTGTAAGACCATGGTTGAAAGAT
64 TAAAATGAACAAGACCATGGTTGAAAGAT
** * *
73084178 ACCATGGCAACATGAC-GGGAATGAATAAGACCATGATTGAAAGATACCATGGCAACGTAACATG
1 ACCATGGCAACATGACAGAAAATGAATAAGACCATGATTGAAAGATACCATGGCAACGAAACATA
73084242 AAATGAACAAGACCATGGTTGAAAGAT
66 AAATGAACAAGACCATGGTTGAAAGAT
* * *
73084269 ACCATGGCAACATGACAGAAAATGAGTAAGACCAT-AGTTGAAAGACACTATGGCA
1 ACCATGGCAACATGACAGAAAATGAATAAGACCATGA-TTGAAAGATACCATGGCA
73084324 TCATGTCAAA
Statistics
Matches: 126, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
90 1 0.01
91 78 0.62
92 47 0.37
ACGTcount: A:0.42, C:0.16, G:0.23, T:0.19
Consensus pattern (92 bp):
ACCATGGCAACATGACAGAAAATGAATAAGACCATGATTGAAAGATACCATGGCAACGAAACATA
AAATGAACAAGACCATGGTTGAAAGAT
Found at i:73084342 original size:137 final size:137
Alignment explanation
Indices: 73083891--73084346 Score: 406
Period size: 137 Copynumber: 3.4 Consensus size: 137
73083881 TTCTGAAAGG
* * * * * *** *
73083891 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCATGGT
1 AAATGAGTAAGACCATAGTTGAAAGACACCATGGCAACATGACAAG-AATAAATAAGACCATGAT
* * * *** *
73083956 TGAAAGACACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAAC
65 TGAAAGATACCATGGCAACATAACATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
* *
73084021 ATGATATG-
130 AAGACA-GA
* * *
73084029 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA-G----G-AT--ATAA-A--ATG--T
1 AAATGAGTAAGACCATAGTTGAAAGACACCATGGCAACATGACAAGAATAAATAAGACCATGATT
* * * ***
73084081 GTAAG--ACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
66 GAAAGATACCATGGCAACATAACATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACA
* *
73084144 AGATATA
131 AGACAGA
* * * ** *
73084151 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAATGAATAAGACCATGATT
1 AAATGAGTAAGACCATAGTTGAAAGACACCATGGCAACATGACAAGAATAAATAAGACCATGATT
*
73084216 GAAAGATACCATGGCAACGTAACATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACA
66 GAAAGATACCATGGCAACATAACATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACA
*
73084281 TGACAGA
131 AGACAGA
* * *
73084288 AAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATGTCAA-AGATAAATAAGACC
1 AAATGAGTAAGACCATAGTTGAAAGACACCATGGCAACATGACAAGA-ATAAATAAGACC
73084347 GTGGATGGGA
Statistics
Matches: 277, Mismatches: 24, Indels: 35
0.82 0.07 0.10
Matches are distributed among these distances:
122 100 0.36
123 1 0.00
124 5 0.02
126 3 0.01
127 1 0.00
128 3 0.01
129 3 0.01
130 4 0.01
131 3 0.01
133 4 0.01
135 5 0.02
136 1 0.00
137 105 0.38
138 39 0.14
ACGTcount: A:0.42, C:0.15, G:0.23, T:0.21
Consensus pattern (137 bp):
AAATGAGTAAGACCATAGTTGAAAGACACCATGGCAACATGACAAGAATAAATAAGACCATGATT
GAAAGATACCATGGCAACATAACATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACA
AGACAGA
Found at i:73084628 original size:16 final size:17
Alignment explanation
Indices: 73084609--73084641 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
73084599 ATGATGGAGC
*
73084609 ATGAAAT-ATTGATATA
1 ATGAAATGATTAATATA
73084625 ATGAAATGATTAATATA
1 ATGAAATGATTAATATA
73084642 TACTTATGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.52, C:0.00, G:0.12, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTAATATA
Found at i:73085403 original size:12 final size:12
Alignment explanation
Indices: 73085377--73085556 Score: 50
Period size: 12 Copynumber: 14.8 Consensus size: 12
73085367 CAAGTCGAAG
*
73085377 TAAAAATAAT-T
1 TAAAAATAATAA
73085388 TAAAAATAATAA
1 TAAAAATAATAA
73085400 TAAAACA-AATGAGTA
1 TAAAA-ATAAT-A--A
73085415 CGTAAAAA-AAT-A
1 --TAAAAATAATAA
*
73085427 TAATAATAATAA
1 TAAAAATAATAA
* *
73085439 TGACAATAAT-A
1 TAAAAATAATAA
73085450 TAAAGAAATAATAA
1 T-AA-AAATAATAA
* *
73085464 TAAGAATAATGA
1 TAAAAATAATAA
** * *
73085476 TAATCATTATAG
1 TAAAAATAATAA
*
73085488 TATAAAA-AA-AG
1 TA-AAAATAATAA
73085499 TAAAAATAATAA
1 TAAAAATAATAA
**
73085511 TAGTAATAATAA
1 TAAAAATAATAA
*** *
73085523 TGTTAATAAAAA
1 TAAAAATAATAA
* *
73085535 GAATAATAATAA
1 TAAAAATAATAA
*
73085547 AAAAAATAAT
1 TAAAAATAAT
73085557 GAATGTGATA
Statistics
Matches: 126, Mismatches: 28, Indels: 29
0.69 0.15 0.16
Matches are distributed among these distances:
10 9 0.07
11 21 0.17
12 72 0.57
13 12 0.10
14 2 0.02
15 1 0.01
16 4 0.03
17 5 0.04
ACGTcount: A:0.64, C:0.02, G:0.07, T:0.27
Consensus pattern (12 bp):
TAAAAATAATAA
Found at i:73085432 original size:3 final size:3
Alignment explanation
Indices: 73085426--73085785 Score: 96
Period size: 3 Copynumber: 120.0 Consensus size: 3
73085416 GTAAAAAAAT
* * *
73085426 ATA ATA ATA ATA ATG ACA ATA AT- ATA A-A GA-A ATA ATA ATA AGA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA
* * * * * *
73085469 ATA ATG ATA ATC ATT ATA GT- ATA A-A AAA AGTA AAA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA
* * * * * * *
73085513 GTA ATA ATA ATG TTA ATA AAA AGA ATA ATA ATA AAA AAA ATA ATGA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A
* * * * * ** *
73085559 AT- GTG ATA GTA ACA TATA ATA ATA ATG A-A ATA ACG CTA ATA ATA
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * *
73085603 GA-A ATA TATA A-G ATA ATA AAA ATA ACA ATA ATA ATA ATG GT- ATG
1 -ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * * *
73085647 TTA ACA ATA ATGA TTA AAA AAA AGA A-A ATA ACA ACA TATGA ATA ATA
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA -AT-A ATA ATA
* * * * * *
73085694 ATA GGCTA ATA ATA ACA ATA ATA AAA ATA GAAA AAA ATA ATA ATG A-A
1 ATA --ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA
* * * *
73085741 ATA AAA ATA ATA TTA ATA ATA ATA CTA ATA ATA ACA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
73085786 TTAAAATTAA
Statistics
Matches: 254, Mismatches: 80, Indels: 46
0.67 0.21 0.12
Matches are distributed among these distances:
2 15 0.06
3 218 0.86
4 18 0.07
5 3 0.01
ACGTcount: A:0.62, C:0.04, G:0.07, T:0.27
Consensus pattern (3 bp):
ATA
Found at i:73085479 original size:31 final size:31
Alignment explanation
Indices: 73085417--73085479 Score: 74
Period size: 34 Copynumber: 2.0 Consensus size: 31
73085407 AATGAGTACG
*
73085417 TAAAAAAATATAATAATAATAATGACAATAATA
1 TAAAAAAATATAATAAGAATAATG--AATAATA
*
73085450 TAAAGAAATAATAATAAGAATAATG-ATAAT
1 TAAAAAAAT-ATAATAAGAATAATGAATAAT
73085480 CATTATAGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
31 5 0.19
33 8 0.30
34 14 0.52
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (31 bp):
TAAAAAAATATAATAAGAATAATGAATAATA
Found at i:73090485 original size:66 final size:66
Alignment explanation
Indices: 73090379--73090510 Score: 246
Period size: 66 Copynumber: 2.0 Consensus size: 66
73090369 AACGAAATGA
73090379 GAAAGAAATGACTTGAACCTAAGATCTCTAAAGACTGCATAAACTACTTAATCATCAAGCCTAAT
1 GAAAGAAATGACTTGAACCTAAGATCTCTAAAGACTGCATAAACTACTTAATCATCAAGCCTAAT
73090444 T
66 T
* *
73090445 GAAAGGAATGACTTGAACCTAAGATCTCTAAAGAGTGCATAAACTACTTAATCATCAAGCCTAAT
1 GAAAGAAATGACTTGAACCTAAGATCTCTAAAGACTGCATAAACTACTTAATCATCAAGCCTAAT
73090510 T
66 T
73090511 CATTTCTTAG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 64 1.00
ACGTcount: A:0.42, C:0.19, G:0.14, T:0.26
Consensus pattern (66 bp):
GAAAGAAATGACTTGAACCTAAGATCTCTAAAGACTGCATAAACTACTTAATCATCAAGCCTAAT
T
Found at i:73092053 original size:28 final size:29
Alignment explanation
Indices: 73092004--73092059 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 29
73091994 ATATTATAAT
* *
73092004 AAAAATTCTAATTATTTTTTAAAGTATTA
1 AAAAATCCTAATTATTTATTAAAGTATTA
* *
73092033 AAAAATCCTATTTA-TTATTAAATTATT
1 AAAAATCCTAATTATTTATTAAAGTATT
73092060 TGTACAATAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
28 11 0.48
29 12 0.52
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.48
Consensus pattern (29 bp):
AAAAATCCTAATTATTTATTAAAGTATTA
Found at i:73092318 original size:18 final size:18
Alignment explanation
Indices: 73092295--73092339 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 18
73092285 TACACATTCT
*
73092295 ATAAAAAAATATTTAAAA
1 ATAAAAAAATATATAAAA
*
73092313 AT-AAAAAATATATAAAC
1 ATAAAAAAATATATAAAA
*
73092330 TTAAAAAAAT
1 ATAAAAAAAT
73092340 CTAAATATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
17 14 0.61
18 9 0.39
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (18 bp):
ATAAAAAAATATATAAAA
Found at i:73097902 original size:27 final size:26
Alignment explanation
Indices: 73097853--73097903 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
73097843 TTGATCACTC
* **
73097853 ATTTTATTTTTTTAATTTCTTTTATT
1 ATTTTATTTTTTGAATTAATTTTATT
73097879 ATTTTATTTTTTAGAATTAATTTTA
1 ATTTTATTTTTT-GAATTAATTTTA
73097904 ATTTTCTCAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 12 0.57
27 9 0.43
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.71
Consensus pattern (26 bp):
ATTTTATTTTTTGAATTAATTTTATT
Found at i:73100109 original size:28 final size:27
Alignment explanation
Indices: 73100059--73100141 Score: 71
Period size: 28 Copynumber: 2.9 Consensus size: 27
73100049 ATTTTTTAAA
73100059 ATTTAAAAAT-TCAAAAAATTTATAAAAGCT
1 ATTTAAAAATAT--AAAAA-TTATAAAA-CT
* * *
73100089 ATTGTTAAAA-GTAAAAATTATTAAAATT
1 ATT-TAAAAATATAAAAATTA-TAAAACT
73100117 ATTTAAAAATATAAAAATTATAAAA
1 ATTTAAAAATATAAAAATTATAAAA
73100142 TTATAAAATA
Statistics
Matches: 45, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
27 10 0.22
28 16 0.36
29 10 0.22
30 3 0.07
31 6 0.13
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (27 bp):
ATTTAAAAATATAAAAATTATAAAACT
Found at i:73100116 original size:9 final size:9
Alignment explanation
Indices: 73100102--73100150 Score: 57
Period size: 9 Copynumber: 5.6 Consensus size: 9
73100092 GTTAAAAGTA
73100102 AAAATTATT
1 AAAATTATT
73100111 AAAATTATTT
1 AAAATTA-TT
* *
73100121 AAAAATATA
1 AAAATTATT
73100130 AAAATTA-T
1 AAAATTATT
73100138 AAAATTA-T
1 AAAATTATT
73100146 AAAAT
1 AAAAT
73100151 ATTTTTTAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
8 13 0.37
9 14 0.40
10 8 0.23
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (9 bp):
AAAATTATT
Found at i:73100124 original size:19 final size:19
Alignment explanation
Indices: 73100102--73100154 Score: 60
Period size: 19 Copynumber: 3.0 Consensus size: 19
73100092 GTTAAAAGTA
73100102 AAAATTATTAAAATTATTT
1 AAAATTATTAAAATTATTT
* *
73100121 AAAAATATAAAAATTA--T
1 AAAATTATTAAAATTATTT
73100138 AAAATTA-TAAAA-TATTT
1 AAAATTATTAAAATTATTT
73100155 TTTAAATTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
15 2 0.07
16 4 0.14
17 8 0.29
19 14 0.50
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (19 bp):
AAAATTATTAAAATTATTT
Found at i:73100150 original size:8 final size:8
Alignment explanation
Indices: 73100102--73100150 Score: 53
Period size: 8 Copynumber: 5.6 Consensus size: 8
73100092 GTTAAAAGTA
73100102 AAAATTATT
1 AAAATTA-T
73100111 AAAATTATTT
1 AAAATTA--T
*
73100121 AAAAATAT
1 AAAATTAT
73100129 AAAAATTAT
1 -AAAATTAT
73100138 AAAATTAT
1 AAAATTAT
73100146 AAAAT
1 AAAAT
73100151 ATTTTTTAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
8 14 0.39
9 14 0.39
10 8 0.22
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (8 bp):
AAAATTAT
Found at i:73100968 original size:13 final size:13
Alignment explanation
Indices: 73100950--73100974 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73100940 CTCTCTTCTT
73100950 CTTTTTTCTGATA
1 CTTTTTTCTGATA
73100963 CTTTTTTCTGAT
1 CTTTTTTCTGAT
73100975 TATTTGAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.16, G:0.08, T:0.64
Consensus pattern (13 bp):
CTTTTTTCTGATA
Found at i:73105560 original size:21 final size:21
Alignment explanation
Indices: 73105526--73105576 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
73105516 ATTAATCTCT
* *
73105526 TCCAATAAAAATTACAAAATAA
1 TCCAA-AATAATTACAAAAAAA
*
73105548 TCCAAAATAATTATAAAAAAA
1 TCCAAAATAATTACAAAAAAA
*
73105569 TTCAAAAT
1 TCCAAAAT
73105577 TTATATTTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
21 20 0.80
22 5 0.20
ACGTcount: A:0.63, C:0.12, G:0.00, T:0.25
Consensus pattern (21 bp):
TCCAAAATAATTACAAAAAAA
Found at i:73112547 original size:22 final size:22
Alignment explanation
Indices: 73112488--73112565 Score: 56
Period size: 22 Copynumber: 3.6 Consensus size: 22
73112478 AATAAAGAAT
73112488 AAATA-AAAGAAAGAAAAACGAG
1 AAATAGAAAGAAAGAAAAAC-AG
* * * *
73112510 AAAAAGAAACAGAGAAGAGAC-G
1 AAATAGAAAGAAAGAA-AAACAG
73112532 AAATAGAAAGAAAGAAAGAACA-
1 AAATAGAAAGAAAGAAA-AACAG
*
73112554 AAAGA-AAAGAAA
1 AAATAGAAAGAAA
73112566 AAGGAGAAAT
Statistics
Matches: 43, Mismatches: 9, Indels: 9
0.70 0.15 0.15
Matches are distributed among these distances:
21 8 0.19
22 24 0.56
23 8 0.19
24 3 0.07
ACGTcount: A:0.72, C:0.05, G:0.21, T:0.03
Consensus pattern (22 bp):
AAATAGAAAGAAAGAAAAACAG
Found at i:73112548 original size:14 final size:15
Alignment explanation
Indices: 73112494--73112548 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
73112484 GAATAAATAA
*
73112494 AAGAAAGAAAAACGAG
1 AAGAAAGAAATA-GAG
*
73112510 AA-AAAGAAACAGAG
1 AAGAAAGAAATAGAG
*
73112524 AAGAGACGAAATAGA-
1 AAGA-AAGAAATAGAG
73112539 AAGAAAGAAA
1 AAGAAAGAAA
73112549 GAACAAAAGA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
14 10 0.30
15 13 0.39
16 10 0.30
ACGTcount: A:0.69, C:0.05, G:0.24, T:0.02
Consensus pattern (15 bp):
AAGAAAGAAATAGAG
Found at i:73114934 original size:17 final size:18
Alignment explanation
Indices: 73114896--73114934 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
73114886 ATGAGATTAG
*
73114896 AATTGAATTGAGAAAATT
1 AATTTAATTGAGAAAATT
73114914 -ATTTAATT-AGAAAATT
1 AATTTAATTGAGAAAATT
73114930 AATTT
1 AATTT
73114935 TTATATCAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (18 bp):
AATTTAATTGAGAAAATT
Found at i:73123892 original size:14 final size:14
Alignment explanation
Indices: 73123873--73123899 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
73123863 TAACTATACA
73123873 ATTAAGAATAATAT
1 ATTAAGAATAATAT
73123887 ATTAAGAATAATA
1 ATTAAGAATAATA
73123900 GATAAAATCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.33
Consensus pattern (14 bp):
ATTAAGAATAATAT
Found at i:73125886 original size:2 final size:2
Alignment explanation
Indices: 73125875--73125904 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
73125865 TTTCAAGGTT
73125875 TC TC -C TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
73125905 TATCAAAACT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:73129289 original size:18 final size:20
Alignment explanation
Indices: 73129266--73129309 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
73129256 TACTTTAATA
73129266 TTTATGCAA-ATAATT-ATT
1 TTTATGCAATATAATTGATT
* *
73129284 TTTATGGAATATTATTGATT
1 TTTATGCAATATAATTGATT
73129304 TTTATG
1 TTTATG
73129310 AAGCAATAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 8 0.36
19 5 0.23
20 9 0.41
ACGTcount: A:0.32, C:0.02, G:0.11, T:0.55
Consensus pattern (20 bp):
TTTATGCAATATAATTGATT
Found at i:73130289 original size:36 final size:35
Alignment explanation
Indices: 73130215--73130289 Score: 80
Period size: 36 Copynumber: 2.1 Consensus size: 35
73130205 TTTTTCCCAA
***
73130215 CATGCATATATATATGAAGCGTTTGTCTTATTTGTT
1 CATGCATATATATATGAA-CGTTTGTCTTATGCATT
*
73130251 CATGCATATATATATGAA-TTTTGTTCTTCATGCATT
1 CATGCATATATATATGAACGTTTG-TCTT-ATGCATT
73130287 CAT
1 CAT
73130290 TACCACTTCA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
34 4 0.12
35 4 0.12
36 25 0.76
ACGTcount: A:0.27, C:0.13, G:0.13, T:0.47
Consensus pattern (35 bp):
CATGCATATATATATGAACGTTTGTCTTATGCATT
Found at i:73132154 original size:25 final size:23
Alignment explanation
Indices: 73132096--73132146 Score: 93
Period size: 23 Copynumber: 2.2 Consensus size: 23
73132086 TTGATTCTCA
*
73132096 CTTTCGCTCTCTCATCTTACATC
1 CTTTTGCTCTCTCATCTTACATC
73132119 CTTTTGCTCTCTCATCTTACATC
1 CTTTTGCTCTCTCATCTTACATC
73132142 CTTTT
1 CTTTT
73132147 TTGTTCTCCT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.12, C:0.35, G:0.04, T:0.49
Consensus pattern (23 bp):
CTTTTGCTCTCTCATCTTACATC
Found at i:73138813 original size:31 final size:31
Alignment explanation
Indices: 73138699--73138823 Score: 101
Period size: 31 Copynumber: 4.1 Consensus size: 31
73138689 GTACCTATAT
* * * *
73138699 TTTCATAAAATGTCCAATGCGTTACTTGT-T
1 TTTCATAAAATGTCTAATGTGGTACTTGTAC
* *
73138729 TTTTA-AAAATGTCTAATGTGGTACTTGAAC
1 TTTCATAAAATGTCTAATGTGGTACTTGTAC
* **** * * * *
73138759 TATCATTTTTTGTATTATTTGGTACTGGTAC
1 TTTCATAAAATGTCTAATGTGGTACTTGTAC
73138790 TTTCATAAAATGTCTAATGTGGTACTTGTAC
1 TTTCATAAAATGTCTAATGTGGTACTTGTAC
73138821 TTT
1 TTT
73138824 GAAAATGTTC
Statistics
Matches: 67, Mismatches: 26, Indels: 3
0.70 0.27 0.03
Matches are distributed among these distances:
29 19 0.28
30 7 0.10
31 41 0.61
ACGTcount: A:0.26, C:0.12, G:0.15, T:0.46
Consensus pattern (31 bp):
TTTCATAAAATGTCTAATGTGGTACTTGTAC
Found at i:73138882 original size:91 final size:91
Alignment explanation
Indices: 73138689--73138890 Score: 221
Period size: 91 Copynumber: 2.2 Consensus size: 91
73138679 TGTTACATCA
* * ** * *
73138689 GTACCTATATTTTCATAAAATGTCCAATGCGTTACTTGTTTTTTAAAAATGTCTAATGTGGTACT
1 GTACCTATACTTTCATAAAATGTCCAATGCGGTACTTGTACTTTAAAAATGTCTAATATGATACT
* * *
73138754 TGAACTATCATTTTTTGTATTATTTG
66 TGAACTATCAATTTGTATATTATTTG
* * * *
73138780 GTA-CTGGTACTTTCATAAAATGTCTAATGTGGTACTTGTACTTTGAAAATGT-TCAATATGATA
1 GTACCT-ATACTTTCATAAAATGTCCAATGCGGTACTTGTACTTTAAAAATGTCT-AATATGATA
* *
73138843 CTTGAACTATCAATTTGTATTTTTTTTG
64 CTTGAACTATCAATTTGTATATTATTTG
73138871 GTACCTATAC-TTCTATAAAA
1 GTACCTATACTTTC-ATAAAA
73138891 GTTATAATAA
Statistics
Matches: 91, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
90 6 0.07
91 83 0.91
92 2 0.02
ACGTcount: A:0.29, C:0.12, G:0.13, T:0.45
Consensus pattern (91 bp):
GTACCTATACTTTCATAAAATGTCCAATGCGGTACTTGTACTTTAAAAATGTCTAATATGATACT
TGAACTATCAATTTGTATATTATTTG
Found at i:73146930 original size:16 final size:15
Alignment explanation
Indices: 73146909--73146938 Score: 51
Period size: 15 Copynumber: 1.9 Consensus size: 15
73146899 ATTGATCTCC
73146909 TTTTTTTAAATATTTA
1 TTTTTTT-AATATTTA
73146925 TTTTTTTAATATTT
1 TTTTTTTAATATTT
73146939 GCTATACTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (15 bp):
TTTTTTTAATATTTA
Found at i:73148041 original size:46 final size:46
Alignment explanation
Indices: 73147982--73148255 Score: 413
Period size: 46 Copynumber: 6.0 Consensus size: 46
73147972 TTTGTCATGT
** * *
73147982 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
*** *** * *
73148028 TGCCATGGTATCTTTCAACCATGGTCTTATTTATTTCCCGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
*
73148074 TACCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
*
73148120 TGCCATGGTATCTTTCAACCATGGTCTTACACGTTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
*
73148166 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
73148212 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
73148256 AGAGCACACT
Statistics
Matches: 211, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 211 1.00
ACGTcount: A:0.22, C:0.26, G:0.15, T:0.37
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
Found at i:73150372 original size:18 final size:20
Alignment explanation
Indices: 73150357--73150393 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
73150347 TAATAATAAA
*
73150357 ATATCTCATTAAAATAATAT
1 ATATCTAATTAAAATAATAT
73150377 ATATCTAATT-AAATAAT
1 ATATCTAATTAAAATAAT
73150394 CATAAAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 7 0.44
20 9 0.56
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (20 bp):
ATATCTAATTAAAATAATAT
Found at i:73156583 original size:42 final size:42
Alignment explanation
Indices: 73156524--73156607 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
73156514 ACCAGGCTAA
73156524 TCACGAGGGTTGGGTACTGTTAATCCACCATGGAAGGGGATT
1 TCACGAGGGTTGGGTACTGTTAATCCACCATGGAAGGGGATT
73156566 TCACGAGGGTTGGGTACTGTTAATCCACCATGGAAGGGGATT
1 TCACGAGGGTTGGGTACTGTTAATCCACCATGGAAGGGGATT
73156608 GTATCATTTA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.24, C:0.17, G:0.33, T:0.26
Consensus pattern (42 bp):
TCACGAGGGTTGGGTACTGTTAATCCACCATGGAAGGGGATT
Found at i:73157027 original size:21 final size:22
Alignment explanation
Indices: 73156981--73157027 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
73156971 AAGGCAGCCA
*
73156981 AAAAGAAAGAAACAAAAAAGAG
1 AAAAGAAAGAAACAAAAAAGAC
*
73157003 AAAAGGAA-AAACAAAAACA-AC
1 AAAAGAAAGAAACAAAAA-AGAC
73157024 AAAA
1 AAAA
73157028 AAAAAAGATT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
21 14 0.64
22 8 0.36
ACGTcount: A:0.79, C:0.09, G:0.13, T:0.00
Consensus pattern (22 bp):
AAAAGAAAGAAACAAAAAAGAC
Found at i:73157542 original size:8 final size:8
Alignment explanation
Indices: 73157496--73157563 Score: 52
Period size: 8 Copynumber: 8.8 Consensus size: 8
73157486 TTGAGACCTT
*
73157496 AAAAAATC
1 AAAAAATA
73157504 AAAAAAT-
1 AAAAAATA
*
73157511 AATAAATA
1 AAAAAATA
73157519 AAAAAATCA
1 AAAAAAT-A
**
73157528 ATCAAA-A
1 AAAAAATA
*
73157535 AATAAA-A
1 AAAAAATA
*
73157542 ATAAAATA
1 AAAAAATA
73157550 AAAAAATA
1 AAAAAATA
73157558 AAAAAA
1 AAAAAA
73157564 AGTGAAAAAA
Statistics
Matches: 48, Mismatches: 9, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
7 16 0.33
8 27 0.56
9 5 0.10
ACGTcount: A:0.81, C:0.04, G:0.00, T:0.15
Consensus pattern (8 bp):
AAAAAATA
Found at i:73157543 original size:18 final size:19
Alignment explanation
Indices: 73157531--73157579 Score: 64
Period size: 18 Copynumber: 2.6 Consensus size: 19
73157521 AAAATCAATC
73157531 AAAAAATAAAAATAAAATA
1 AAAAAATAAAAATAAAATA
* *
73157550 AAAAAATAAAAA-AAAGTG
1 AAAAAATAAAAATAAAATA
*
73157568 AAAAAAGAAAAA
1 AAAAAATAAAAA
73157580 GGAGAGGCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 15 0.56
19 12 0.44
ACGTcount: A:0.84, C:0.00, G:0.06, T:0.10
Consensus pattern (19 bp):
AAAAAATAAAAATAAAATA
Found at i:73157553 original size:19 final size:18
Alignment explanation
Indices: 73157504--73157579 Score: 73
Period size: 19 Copynumber: 4.1 Consensus size: 18
73157494 TTAAAAAATC
*
73157504 AAAAAAT-AATAAATAAA
1 AAAAAATAAAAAAATAAA
*
73157521 AAAATCAATCAAAAAATAAA
1 AAAA--AATAAAAAAATAAA
73157541 AATAAAATAAAAAAATAAA
1 AA-AAAATAAAAAAATAAA
* * *
73157560 AAAAAGTGAAAAAAGAAA
1 AAAAAATAAAAAAATAAA
73157578 AA
1 AA
73157580 GGAGAGGCCA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
17 4 0.08
18 15 0.30
19 18 0.36
20 11 0.22
21 2 0.04
ACGTcount: A:0.80, C:0.03, G:0.04, T:0.13
Consensus pattern (18 bp):
AAAAAATAAAAAAATAAA
Found at i:73157561 original size:27 final size:27
Alignment explanation
Indices: 73157496--73157563 Score: 93
Period size: 27 Copynumber: 2.5 Consensus size: 27
73157486 TTGAGACCTT
73157496 AAAAAATCAAAAAATAATAAATAAAAA
1 AAAAAATCAAAAAATAATAAATAAAAA
**
73157523 AATCAATCAAAAAATAA-AAATAAAATA
1 AAAAAATCAAAAAATAATAAATAAAA-A
*
73157550 AAAAAATAAAAAAA
1 AAAAAATCAAAAAA
73157564 AGTGAAAAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
26 8 0.23
27 27 0.77
ACGTcount: A:0.81, C:0.04, G:0.00, T:0.15
Consensus pattern (27 bp):
AAAAAATCAAAAAATAATAAATAAAAA
Found at i:73157573 original size:31 final size:31
Alignment explanation
Indices: 73157496--73157578 Score: 82
Period size: 31 Copynumber: 2.6 Consensus size: 31
73157486 TTGAGACCTT
73157496 AAAAAATCAAAAAATAATAAATAAAAAAATCAATC
1 AAAAAAT-AAAAAAT-A-AAATAAAAAAATCAA-C
73157531 AAAAAAT-AAAAATAAAATAAAAAAAT-AA-
1 AAAAAATAAAAAATAAAATAAAAAAATCAAC
*
73157559 AAAAAAGTGAAAAAAGAAAA
1 AAAAAA-T-AAAAAATAAAA
73157579 AGGAGAGGCC
Statistics
Matches: 44, Mismatches: 1, Indels: 10
0.80 0.02 0.18
Matches are distributed among these distances:
28 6 0.14
29 1 0.02
30 2 0.05
31 21 0.48
32 1 0.02
33 6 0.14
35 7 0.16
ACGTcount: A:0.80, C:0.04, G:0.04, T:0.13
Consensus pattern (31 bp):
AAAAAATAAAAAATAAAATAAAAAAATCAAC
Found at i:73158791 original size:44 final size:44
Alignment explanation
Indices: 73158763--73159192 Score: 170
Period size: 44 Copynumber: 9.8 Consensus size: 44
73158753 TTAAGCTACT
*
73158763 AGCCTTATCTCCC-CAAGGTTGCAGTGGAGCAGGCTCAAGATACA
1 AGCCTTATCTCCCTCAA-GTTGCAGTGGAGCAGACTCAAGATACA
* * *
73158807 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAAATTAC-
1 AGCCTTATCTCCCTCAAGTTGCAGTGGAGCAGACTCAAGA-TACA
* * * *
73158850 AGATCTTATCTCCCT-AAGTAGTAGTGGAGCAGA-TCGAAGACAGCGA
1 AG-CCTTATCTCCCTCAAGTTGCAGTGGAGCAGACTC-AAGATA-C-A
* * ** * * * * * * * *
73158896 A-TCTTATCTCCATGTA-TCGACAATGGAACAGATTTAAGCTGCC
1 AGCCTTATCTCCCTCAAGTTG-CAGTGGAGCAGACTCAAGATACA
* * * * *
73158939 AGCCTTATCTCTCTGAGGTTGCAGTGGAACAGGCTCAAGATACA
1 AGCCTTATCTCCCTCAAGTTGCAGTGGAGCAGACTCAAGATACA
* * * *
73158983 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAATTAC-
1 AGCCTTATCTCCCTCAAGTTGCAGTGGAGCAGACTCAAGA-TACA
* *** * *
73159027 AGATCTTA--TCCCT-AAACAGTAGTGGAGCAGA-TCGAAGATGGCGA
1 AG-CCTTATCTCCCTCAAGTTGCAGTGGAGCAGACTC-AAGAT-AC-A
* * ** * * * * **
73159071 A-TCTTATCTCCATGTA-TCGGCAATGGAGCAGATTTAAGCCACCA
1 AGCCTTATCTCCCTCAAGT-TGCAGTGGAGCAGACTCAAGATA-CA
* * * *
73159115 A-CCTTATCTCCCTGAGGTTGCAGTAGAGCAGGCTCAAGATACA
1 AGCCTTATCTCCCTCAAGTTGCAGTGGAGCAGACTCAAGATACA
* *
73159158 AGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACT
1 AGCCTTATCTCCCTCAAGTTGCAGTGGAGCAGACT
73159193 GAAAATTACA
Statistics
Matches: 286, Mismatches: 73, Indels: 54
0.69 0.18 0.13
Matches are distributed among these distances:
41 2 0.01
42 24 0.08
43 31 0.11
44 184 0.64
45 42 0.15
46 3 0.01
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (44 bp):
AGCCTTATCTCCCTCAAGTTGCAGTGGAGCAGACTCAAGATACA
Found at i:73158961 original size:176 final size:177
Alignment explanation
Indices: 73158667--73159482 Score: 1253
Period size: 176 Copynumber: 4.6 Consensus size: 177
73158657 CAATACCGGT
* *
73158667 AAATTACAGATCATATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTCTA
1 AAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTCCA
* * * **
73158732 TGTATCGGCAATGGAGTAGATTTAAGCTACTAGCCTTATCTCCCCAAGGTTGCAGTGGAGCAGGC
66 TGTATCGGCAATGGAGCAGATTTAAGCCACCAGCCTTATCTCCCTGAGGTTGCAGTGGAGCAGGC
*
73158797 TCAAGATACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-A
131 TCAAGATACAAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGA
* *
73158843 AAATTACAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGACAGCGAATCTTATCTCCA
1 AAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTCCA
* * ** * *
73158908 TGTATCGACAATGGAACAGATTTAAGCTGCCAGCCTTATCTCTCTGAGGTTGCAGTGGAACAGGC
66 TGTATCGGCAATGGAGCAGATTTAAGCCACCAGCCTTATCTCCCTGAGGTTGCAGTGGAGCAGGC
*
73158973 TCAAGATACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGA
131 TCAAGATACAAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGA
* *
73159020 AAATTACAGATCTTA--TCCCTAAACAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTCCA
1 AAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTCCA
* *
73159083 TGTATCGGCAATGGAGCAGATTTAAGCCACCAACCTTATCTCCCTGAGGTTGCAGTAGAGCAGGC
66 TGTATCGGCAATGGAGCAGATTTAAGCCACCAGCCTTATCTCCCTGAGGTTGCAGTGGAGCAGGC
73159148 TCAAGATACAAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGA
131 TCAAGATACAAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGA
* * * *
73159195 AAATTACAGATCTCATCTCCCTAAGCAATAGTGGAGTAGATCAAAGACGGCGAATCTTATCTCCA
1 AAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTCCA
* * * * *
73159260 TGTATTGGTAATAGAGCAGATTTAAGCCACCAGTCTTATCTCCCTAAGGTTGCA-TGGAGCAGGC
66 TGTATCGGCAATGGAGCAGATTTAAGCCACCAGCCTTATCTCCCTGAGGTTGCAGTGGAGCAGGC
* *
73159324 TCAAGATACAAGTCTTATCTCCCTAAAGTTGCAGAGGAGCAAACTGA
131 TCAAGATACAAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGA
* * *
73159371 AAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCAA
1 AAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTCCA
* * * *
73159436 TGTATCGGCAATAGAGCAAATTTTAGCCACCAGCCTTATCTCTCTGA
66 TGTATCGGCAATGGAGCAGATTTAAGCCACCAGCCTTATCTCCCTGA
73159483 AGCAGCAAGA
Statistics
Matches: 582, Mismatches: 55, Indels: 6
0.91 0.09 0.01
Matches are distributed among these distances:
175 161 0.28
176 314 0.54
177 107 0.18
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.26
Consensus pattern (177 bp):
AAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTCCA
TGTATCGGCAATGGAGCAGATTTAAGCCACCAGCCTTATCTCCCTGAGGTTGCAGTGGAGCAGGC
TCAAGATACAAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGA
Found at i:73159327 original size:351 final size:351
Alignment explanation
Indices: 73158667--73159482 Score: 1238
Period size: 351 Copynumber: 2.3 Consensus size: 351
73158657 CAATACCGGT
* * *
73158667 AAATTACAGATCATATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTCTA
1 AAATTACAGATC-T-TATCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTCAA
* * * ** *
73158732 TGTATCGGCAATGGAGTAGATTTAAGCTACTAGCCTTATCTCCCCAAGGTTGCAGTGGAGCAGGC
64 TGTATCGGCAATGGAGCAGATTTAAGCCACCAGCCTTATCTCCCTGAGGTTGCAGTAGAGCAGGC
* *
73158797 TCAAGATACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAATTACAGATCTTATCTC
129 TCAAGATACAAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTAAAATTACAGATCTCATCTC
* * * *
73158862 CCTAAGTAGTAGTGGAGCAGATCGAAGACAGCGAATCTTATCTCCATGTATCGACAATGGAACAG
194 CCTAAGCAATAGTGGAGCAGATCAAAGACAGCGAATCTTATCTCCATGTATCGACAATAGAACAG
** * *
73158927 ATTTAAGCTGCCAGCCTTATCTCTCTGAGGTTGCAGTGGAACAGGCTCAAGATACAAGTCTTATC
259 ATTTAAGCCACCAGCCTTATCTCCCTAAGGTTGCAGTGGAACAGGCTCAAGATACAAGTCTTATC
* * *
73158992 TCCCTGAAGTTGCAGTGGAGCAGACTGA
324 TCCCTAAAGTTGCAGAGGAGCAAACTGA
* *
73159020 AAATTACAGATCTTATCCCTAAACAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTCCATG
1 AAATTACAGATCTTATCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTCAATG
*
73159085 TATCGGCAATGGAGCAGATTTAAGCCACCAACCTTATCTCCCTGAGGTTGCAGTAGAGCAGGCTC
66 TATCGGCAATGGAGCAGATTTAAGCCACCAGCCTTATCTCCCTGAGGTTGCAGTAGAGCAGGCTC
73159150 AAGATACAAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAAATTACAGATCTCATCTCC
131 AAGATACAAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACT-AAAATTACAGATCTCATCTCC
* * * ** *
73159215 CTAAGCAATAGTGGAGTAGATCAAAGACGGCGAATCTTATCTCCATGTATTGGTAATAGAGCAGA
195 CTAAGCAATAGTGGAGCAGATCAAAGACAGCGAATCTTATCTCCATGTATCGACAATAGAACAGA
* *
73159280 TTTAAGCCACCAGTCTTATCTCCCTAAGGTTGCA-TGGAGCAGGCTCAAGATACAAGTCTTATCT
260 TTTAAGCCACCAGCCTTATCTCCCTAAGGTTGCAGTGGAACAGGCTCAAGATACAAGTCTTATCT
73159344 CCCTAAAGTTGCAGAGGAGCAAACTGA
325 CCCTAAAGTTGCAGAGGAGCAAACTGA
*
73159371 AAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCAA
1 AAATTACAGATCTTA--TCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTCAA
* * * *
73159436 TGTATCGGCAATAGAGCAAATTTTAGCCACCAGCCTTATCTCTCTGA
64 TGTATCGGCAATGGAGCAGATTTAAGCCACCAGCCTTATCTCCCTGA
73159483 AGCAGCAAGA
Statistics
Matches: 420, Mismatches: 40, Indels: 6
0.90 0.09 0.01
Matches are distributed among these distances:
351 216 0.51
352 105 0.25
353 99 0.24
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.26
Consensus pattern (351 bp):
AAATTACAGATCTTATCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTCAATG
TATCGGCAATGGAGCAGATTTAAGCCACCAGCCTTATCTCCCTGAGGTTGCAGTAGAGCAGGCTC
AAGATACAAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTAAAATTACAGATCTCATCTCCC
TAAGCAATAGTGGAGCAGATCAAAGACAGCGAATCTTATCTCCATGTATCGACAATAGAACAGAT
TTAAGCCACCAGCCTTATCTCCCTAAGGTTGCAGTGGAACAGGCTCAAGATACAAGTCTTATCTC
CCTAAAGTTGCAGAGGAGCAAACTGA
Found at i:73159392 original size:45 final size:43
Alignment explanation
Indices: 73159291--73159394 Score: 120
Period size: 43 Copynumber: 2.4 Consensus size: 43
73159281 TTAAGCCACC
* * ** *
73159291 AGTCTTATCTCCCTAAGGTTGCATGGAGCAGGCTCAAGATACA
1 AGTCTTATCTCCCTAAAGTTGCAAGGAGCAAACTCAAAATACA
*
73159334 AGTCTTATCTCCCTAAAGTTGCAGAGGAGCAAACTGAAAATTAC-
1 AGTCTTATCTCCCTAAAGTTGCA-AGGAGCAAACTCAAAA-TACA
73159378 AGATCTTATCTCCCTAA
1 AG-TCTTATCTCCCTAA
73159395 GCAGTAGTGG
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
43 22 0.42
44 13 0.25
45 17 0.33
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (43 bp):
AGTCTTATCTCCCTAAAGTTGCAAGGAGCAAACTCAAAATACA
Found at i:73161118 original size:19 final size:20
Alignment explanation
Indices: 73161094--73161140 Score: 69
Period size: 19 Copynumber: 2.4 Consensus size: 20
73161084 ATTTCAAAAT
*
73161094 TTATTTTTTTATTG-TTTTA
1 TTATTTTTTTATGGTTTTTA
73161113 TTATTTTTTTATGGTTTTTA
1 TTATTTTTTTATGGTTTTTA
73161133 TTCATTTT
1 TT-ATTTT
73161141 AAATATTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 13 0.52
20 7 0.28
21 5 0.20
ACGTcount: A:0.15, C:0.02, G:0.06, T:0.77
Consensus pattern (20 bp):
TTATTTTTTTATGGTTTTTA
Found at i:73164816 original size:21 final size:21
Alignment explanation
Indices: 73164792--73164833 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
73164782 ACATATAAAT
*
73164792 ATATATTATTAGA-TATTCAAA
1 ATATATTACT-GATTATTCAAA
*
73164813 ATATTTTACTGATTATTCAAA
1 ATATATTACTGATTATTCAAA
73164834 TCTAATAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.43, C:0.07, G:0.05, T:0.45
Consensus pattern (21 bp):
ATATATTACTGATTATTCAAA
Found at i:73165352 original size:17 final size:17
Alignment explanation
Indices: 73165330--73165368 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
73165320 AAAATATTTA
*
73165330 TTTTAATGT-TTTTAGTT
1 TTTTAATGTATTATA-TT
73165347 TTTTAATGTATTATATT
1 TTTTAATGTATTATATT
73165364 TTTTA
1 TTTTA
73165369 TTTTTTATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.23, C:0.00, G:0.08, T:0.69
Consensus pattern (17 bp):
TTTTAATGTATTATATT
Found at i:73169708 original size:18 final size:17
Alignment explanation
Indices: 73169675--73169708 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
73169665 ATATGATTAT
*
73169675 ATAAAAAAATTTAATAA
1 ATAAAAAAATTAAATAA
73169692 ATAAAAAATATTAAATA
1 ATAAAAAA-ATTAAATA
73169709 TCAAAATAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
ATAAAAAAATTAAATAA
Found at i:73181298 original size:15 final size:15
Alignment explanation
Indices: 73181278--73181328 Score: 57
Period size: 15 Copynumber: 3.4 Consensus size: 15
73181268 TATGACTTAA
*
73181278 TTTAATTCGTAATTT
1 TTTAATACGTAATTT
*
73181293 TTTAATACTTAATTT
1 TTTAATACGTAATTT
** *
73181308 TTTAATATTTAAATT
1 TTTAATACGTAATTT
73181323 TTTAAT
1 TTTAAT
73181329 TTAATAGTGA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 32 1.00
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (15 bp):
TTTAATACGTAATTT
Found at i:73181322 original size:16 final size:15
Alignment explanation
Indices: 73181287--73181328 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
73181277 ATTTAATTCG
73181287 TAATTTTTTAATACT
1 TAATTTTTTAATACT
*
73181302 TAATTTTTTAATATT
1 TAATTTTTTAATACT
*
73181317 TAAATTTTTAAT
1 TAATTTTTTAAT
73181329 TTAATAGTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (15 bp):
TAATTTTTTAATACT
Found at i:73182727 original size:4 final size:4
Alignment explanation
Indices: 73182718--73182749 Score: 55
Period size: 4 Copynumber: 7.8 Consensus size: 4
73182708 TGATGTGAGA
73182718 TTTC TTTC TTTC TTTC TTTC TTTC TTTTC TTT
1 TTTC TTTC TTTC TTTC TTTC TTTC -TTTC TTT
73182750 TCACATAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 23 0.85
5 4 0.15
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTC
Found at i:73183347 original size:19 final size:18
Alignment explanation
Indices: 73183318--73183365 Score: 62
Period size: 17 Copynumber: 2.6 Consensus size: 18
73183308 GTATTATTTT
*
73183318 TATATTATTATAATTGTGTG
1 TATA-TATTAT-AGTGTGTG
73183338 TATATATTAT-GTGTGTG
1 TATATATTATAGTGTGTG
73183355 TATATATTATA
1 TATATATTATA
73183366 TGCATATAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
17 16 0.62
19 6 0.23
20 4 0.15
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (18 bp):
TATATATTATAGTGTGTG
Found at i:73183354 original size:17 final size:17
Alignment explanation
Indices: 73183332--73183364 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
73183322 TTATTATAAT
73183332 TGTGTGTATATATTATG
1 TGTGTGTATATATTATG
73183349 TGTGTGTATATATTAT
1 TGTGTGTATATATTAT
73183365 ATGCATATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.00, G:0.21, T:0.55
Consensus pattern (17 bp):
TGTGTGTATATATTATG
Found at i:73184780 original size:3 final size:3
Alignment explanation
Indices: 73184772--73184806 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
73184762 ATACTATATA
*
73184772 AAT AAT AAT AAT AAT AAT AAT AAT GAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
73184807 AAGTTTTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:73184958 original size:17 final size:16
Alignment explanation
Indices: 73184938--73184987 Score: 59
Period size: 17 Copynumber: 3.1 Consensus size: 16
73184928 TTAGTCTATA
73184938 AATAGAAATAGAAATAT
1 AATA-AAATAGAAATAT
73184955 AAT--AATAGAAATAT
1 AATAAAATAGAAATAT
*
73184969 AATAATAGTAGAAATAT
1 AATAA-AATAGAAATAT
73184986 AA
1 AA
73184988 ATAGATAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
14 14 0.48
17 15 0.52
ACGTcount: A:0.64, C:0.00, G:0.10, T:0.26
Consensus pattern (16 bp):
AATAAAATAGAAATAT
Found at i:73184960 original size:43 final size:42
Alignment explanation
Indices: 73184907--73185021 Score: 135
Period size: 43 Copynumber: 2.6 Consensus size: 42
73184897 ATATATAAGA
* *
73184907 AAAATAATAAT-GAAAATAATATTAGTCTATAAATAGAAATAG
1 AAAATAATAATAGAAAATAATAATAGT-TAGAAATAGAAATAG
*
73184949 AAATATAATAATAGAAATATAATAATAG-TAGAAATATAAATAG
1 AAA-ATAATAATAGAAA-ATAATAATAGTTAGAAATAGAAATAG
73184992 ATAAATAATAATTAGATAAATAATAATAGT
1 A-AAATAATAA-TAGA-AAATAATAATAGT
73185022 ATTAGAATAA
Statistics
Matches: 63, Mismatches: 3, Indels: 11
0.82 0.04 0.14
Matches are distributed among these distances:
42 3 0.05
43 29 0.46
44 20 0.32
45 11 0.17
ACGTcount: A:0.61, C:0.01, G:0.09, T:0.30
Consensus pattern (42 bp):
AAAATAATAATAGAAAATAATAATAGTTAGAAATAGAAATAG
Found at i:73185018 original size:15 final size:14
Alignment explanation
Indices: 73184908--73185062 Score: 87
Period size: 14 Copynumber: 10.8 Consensus size: 14
73184898 TATATAAGAA
73184908 AAATAATAAT-GA-
1 AAATAATAATAGAT
*
73184920 AAATAATATTAGTCTAT
1 AAATAATAATAG---AT
73184937 AAATAGA-AATAGA-
1 AAATA-ATAATAGAT
73184950 AATATAATAATAGA-
1 AA-ATAATAATAGAT
*
73184964 AATATAATAATAGTAG
1 AA-ATAATAATAG-AT
73184980 AAAT-ATAAATAGAT
1 AAATAAT-AATAGAT
73184994 AAATAATAATTAGAT
1 AAATAATAA-TAGAT
73185009 AAATAATAATAGTATT
1 AAATAATAATAG-A-T
*
73185025 AGAATAACAA-A-AT
1 A-AATAATAATAGAT
73185038 AAAT-ATAAATAGA-
1 AAATAAT-AATAGAT
73185051 AACATAATAATA
1 AA-ATAATAATA
73185063 ATAGCAATAA
Statistics
Matches: 117, Mismatches: 5, Indels: 40
0.72 0.03 0.25
Matches are distributed among these distances:
11 1 0.01
12 14 0.12
13 9 0.08
14 43 0.37
15 27 0.23
16 6 0.05
17 16 0.14
18 1 0.01
ACGTcount: A:0.62, C:0.02, G:0.08, T:0.28
Consensus pattern (14 bp):
AAATAATAATAGAT
Found at i:73185071 original size:29 final size:30
Alignment explanation
Indices: 73184944--73185076 Score: 103
Period size: 29 Copynumber: 4.5 Consensus size: 30
73184934 TATAAATAGA
73184944 AATAGAAATATAATAATAGAAATATAATAAT
1 AATAGAAATAT-ATAATAGAAATATAATAAT
*
73184975 AGTAGAAATATA-AATAGATAA-ATAATAAT
1 AATAGAAATATATAATAGA-AATATAATAAT
* * * * * * *
73185004 TAGATAAATA-ATAATAGTATTAGAATAAC
1 AATAGAAATATATAATAGAAATATAATAAT
* * *
73185033 AAAATAAATATA-AATAGAAACATAATAAT
1 AATAGAAATATATAATAGAAATATAATAAT
*
73185062 AATAGCAATAATATA
1 AATAGAAAT-ATATA
73185077 TTAAATTAGT
Statistics
Matches: 77, Mismatches: 19, Indels: 12
0.71 0.18 0.11
Matches are distributed among these distances:
28 2 0.03
29 57 0.74
30 7 0.09
31 11 0.14
ACGTcount: A:0.62, C:0.02, G:0.08, T:0.28
Consensus pattern (30 bp):
AATAGAAATATATAATAGAAATATAATAAT
Found at i:73186546 original size:95 final size:97
Alignment explanation
Indices: 73186353--73186552 Score: 370
Period size: 97 Copynumber: 2.1 Consensus size: 97
73186343 AGAGTCTATA
*
73186353 AAGCAAT-AAAAAAATAGTTTTGACATTTGACTATTGAGGAAATTTTAAATTTGAATATTGGTAT
1 AAGCAATAAAAAAAATAGTTTTGACATTTGACTATTGAGGAAATTTTAAATTTGAATATTGATAT
73186417 GTTTATATATATATTTTAAAATAACTTAATTG
66 GTTTATATATATATTTTAAAATAACTTAATTG
73186449 AAGCAATAAAAAAAATAGTTTTGACATTTGACTATTGAGGAAATTTTAAATTTGAATATTGATAT
1 AAGCAATAAAAAAAATAGTTTTGACATTTGACTATTGAGGAAATTTTAAATTTGAATATTGATAT
73186514 G-TT-TATATATATTTTAAAATAACTTAATTG
66 GTTTATATATATATTTTAAAATAACTTAATTG
73186544 AAGCAATAA
1 AAGCAATAA
73186553 GTCACCACAG
Statistics
Matches: 102, Mismatches: 1, Indels: 3
0.96 0.01 0.03
Matches are distributed among these distances:
95 36 0.35
96 9 0.09
97 57 0.56
ACGTcount: A:0.43, C:0.04, G:0.12, T:0.40
Consensus pattern (97 bp):
AAGCAATAAAAAAAATAGTTTTGACATTTGACTATTGAGGAAATTTTAAATTTGAATATTGATAT
GTTTATATATATATTTTAAAATAACTTAATTG
Found at i:73186693 original size:22 final size:24
Alignment explanation
Indices: 73186661--73186705 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
73186651 TAAAGGTTAA
73186661 TAATATAACATGTG-CAACTATTG
1 TAATATAACATGTGACAACTATTG
*
73186684 TAATA-AACATGTGACAATTATT
1 TAATATAACATGTGACAACTATT
73186706 CGATTTTACA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.36
Consensus pattern (24 bp):
TAATATAACATGTGACAACTATTG
Found at i:73188688 original size:13 final size:13
Alignment explanation
Indices: 73188670--73188696 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
73188660 GAAGTAATTG
73188670 CACACGGGCATGT
1 CACACGGGCATGT
73188683 CACACGGGCATGT
1 CACACGGGCATGT
73188696 C
1 C
73188697 CTTACCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.33, G:0.30, T:0.15
Consensus pattern (13 bp):
CACACGGGCATGT
Found at i:73190568 original size:29 final size:29
Alignment explanation
Indices: 73190526--73190584 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
73190516 ATCATGGAGT
*
73190526 CAATCCACGAGAAGTACCATGATTGAAAA
1 CAATCCACAAGAAGTACCATGATTGAAAA
73190555 CAATCCACAAGAAGTACCATGATTGAAAA
1 CAATCCACAAGAAGTACCATGATTGAAAA
73190584 C
1 C
73190585 TCCTTACTGT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.46, C:0.22, G:0.15, T:0.17
Consensus pattern (29 bp):
CAATCCACAAGAAGTACCATGATTGAAAA
Found at i:73196839 original size:12 final size:12
Alignment explanation
Indices: 73196822--73196854 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
73196812 CGGCCCGCCC
73196822 ATATTAATTTTT
1 ATATTAATTTTT
73196834 ATATT-ATTTTT
1 ATATTAATTTTT
73196845 ATA-TAATTTT
1 ATATTAATTTT
73196855 AAAATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:73197013 original size:30 final size:30
Alignment explanation
Indices: 73196977--73197039 Score: 94
Period size: 30 Copynumber: 2.1 Consensus size: 30
73196967 ACTTAACAAG
73196977 CAAATGT-TTCTAAAATAATAACAAAA-TTAA
1 CAAATGTCTT-TAAAATAATAA-AAAATTTAA
73197007 CAAATGTCTTTAAAATAATAAAAAATTTAA
1 CAAATGTCTTTAAAATAATAAAAAATTTAA
73197037 CAA
1 CAA
73197040 TAAAATAAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
29 4 0.13
30 25 0.81
31 2 0.06
ACGTcount: A:0.57, C:0.10, G:0.03, T:0.30
Consensus pattern (30 bp):
CAAATGTCTTTAAAATAATAAAAAATTTAA
Found at i:73197094 original size:22 final size:22
Alignment explanation
Indices: 73197069--73197111 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
73197059 TATCCAAACA
73197069 ATAACAACAAAATAGTAGCAAC
1 ATAACAACAAAATAGTAGCAAC
* **
73197091 ATAATAGTAAAATAGTAGCAA
1 ATAACAACAAAATAGTAGCAA
73197112 AATAGTGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.19
Consensus pattern (22 bp):
ATAACAACAAAATAGTAGCAAC
Found at i:73197124 original size:11 final size:11
Alignment explanation
Indices: 73197076--73197117 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
73197066 ACAATAACAA
73197076 CAAAATAGTAG
1 CAAAATAGTAG
* *
73197087 CAACATAATAG
1 CAAAATAGTAG
*
73197098 TAAAATAGTAG
1 CAAAATAGTAG
73197109 CAAAATAGT
1 CAAAATAGT
73197118 GAGAAAACAA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.55, C:0.10, G:0.14, T:0.21
Consensus pattern (11 bp):
CAAAATAGTAG
Found at i:73201006 original size:3 final size:3
Alignment explanation
Indices: 73200984--73201286 Score: 130
Period size: 3 Copynumber: 100.7 Consensus size: 3
73200974 CATTTTTTAG
* * ** *
73200984 TTA TTT TTA CTA TT- TTA TTA TTA AAA TTAA TTAA TTA CTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TT-A TTA TTA TTA TTA
* * * ** *
73201030 ATA TTT TTA TTA TTA CTA TTA TTA TTA GTCC TT- TTA CTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA
* * * *
73201075 TTTA TTA TCA ATA TTA TTA TTA TTA TTA CTA TTA TTA CTA GTT- TTA
1 -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA
* * ** * * * * *
73201121 TTT TTA TTA CTA TTA ACA TTA GTA TTA TTA TCA TTT TTG TAA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * **
73201169 TTA CTA TTA TT- TTT TTA CTA CTA TTA TTTA GCA -TA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA
** ** * * * * * * *
73201213 CAA TTA TTA TTA CCA TAA TTA TTA TTT TTA TTT TTA CTA CTA CTA CTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
73201261 CTA TTA TTA TTA TTA TCA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
73201287 GTCATTTTTA
Statistics
Matches: 219, Mismatches: 71, Indels: 20
0.71 0.23 0.06
Matches are distributed among these distances:
2 9 0.04
3 195 0.89
4 15 0.07
ACGTcount: A:0.32, C:0.08, G:0.02, T:0.58
Consensus pattern (3 bp):
TTA
Found at i:73201285 original size:12 final size:12
Alignment explanation
Indices: 73201203--73201298 Score: 50
Period size: 12 Copynumber: 7.8 Consensus size: 12
73201193 TATTTAGCAT
73201203 ATTATTATTA-C
1 ATTATTATTATC
*
73201214 AATTATTATTACC
1 -ATTATTATTATC
* *
73201227 ATAATTATTATT
1 ATTATTATTATC
* *
73201239 TTTATTTTTACTAC
1 ATTATTATTA-T-C
* * * *
73201253 TACTACTACTATT
1 -ATTATTATTATC
73201266 ATTATTATTATC
1 ATTATTATTATC
*
73201278 ATTATTATTGTC
1 ATTATTATTATC
*
73201290 ATTTTTATT
1 ATTATTATT
73201299 TTGTCATATT
Statistics
Matches: 61, Mismatches: 19, Indels: 8
0.69 0.22 0.09
Matches are distributed among these distances:
12 53 0.87
13 2 0.03
14 1 0.02
15 5 0.08
ACGTcount: A:0.31, C:0.10, G:0.01, T:0.57
Consensus pattern (12 bp):
ATTATTATTATC
Found at i:73201304 original size:14 final size:16
Alignment explanation
Indices: 73201279--73201312 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
73201269 ATTATTATCA
73201279 TTATTATTGTCAT-TT
1 TTATTATTGTCATATT
73201294 TTATT-TTGTCATATT
1 TTATTATTGTCATATT
73201309 TTAT
1 TTAT
73201313 ATTTTTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.21, C:0.06, G:0.06, T:0.68
Consensus pattern (16 bp):
TTATTATTGTCATATT
Found at i:73201403 original size:8 final size:8
Alignment explanation
Indices: 73201312--73201418 Score: 51
Period size: 8 Copynumber: 13.0 Consensus size: 8
73201302 TCATATTTTA
73201312 TATTT-TT
1 TATTTATT
*
73201319 TATTTACT
1 TATTTATT
73201327 TATTTATT
1 TATTTATT
**
73201335 TGCTTATT
1 TATTTATT
*
73201343 TCATTTTTCT
1 T-ATTTAT-T
73201353 TATTTATT
1 TATTTATT
*
73201361 TGTTTAAGTT
1 TATTT-A-TT
*
73201371 T-TTTAAT
1 TATTTATT
* *
73201378 AATTTTTT
1 TATTTATT
73201386 TACTTT-TT
1 TA-TTTATT
73201394 TATTTATT
1 TATTTATT
73201402 TATATT-TT
1 TAT-TTATT
73201410 TATATTATT
1 TAT-TTATT
73201419 AGTCTTGTTT
Statistics
Matches: 76, Mismatches: 14, Indels: 18
0.70 0.13 0.17
Matches are distributed among these distances:
7 9 0.12
8 43 0.57
9 19 0.25
10 5 0.07
ACGTcount: A:0.21, C:0.05, G:0.03, T:0.71
Consensus pattern (8 bp):
TATTTATT
Found at i:73213076 original size:44 final size:43
Alignment explanation
Indices: 73213001--73213209 Score: 133
Period size: 44 Copynumber: 4.8 Consensus size: 43
73212991 GCAAATCAAA
* * *
73213001 ACAAGCCTTATCT-CCTCGAAGTTACAGTGGAGCAGGTTGAAGTC
1 ACAAGTCTTATCTCCCT-GAAATTGCAGTGGAGCAGGTTGAA-TC
* * * *
73213045 ACTAGTCTTATCTCCCTGAAATTGCAATGGAGCATAG-TGAA-G
1 ACAAGTCTTATCTCCCTGAAATTGCAGTGGAGCA-GGTTGAATC
* * * * * * *
73213087 ACAATAGATCTTATCTCTCTGAAGTTACAGTAGAGCA-GATCAA-A
1 AC-A-AG-TCTTATCTCCCTGAAATTGCAGTGGAGCAGGTTGAATC
** * * *
73213131 ACAAACCTTATCTCGCTGAAGTTGCAGTGGAGCAGGTTGATATT
1 ACAAGTCTTATCTCCCTGAAATTGCAGTGGAGCAGGTTGA-ATC
73213175 ACAAGTCTTATCTCCCT-AAATTTGCAGTGGAGCAG
1 ACAAGTCTTATCTCCCTGAAA-TTGCAGTGGAGCAG
73213210 ATTAAACAAC
Statistics
Matches: 128, Mismatches: 27, Indels: 20
0.73 0.15 0.11
Matches are distributed among these distances:
41 25 0.20
42 6 0.05
43 5 0.04
44 64 0.50
45 28 0.22
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.28
Consensus pattern (43 bp):
ACAAGTCTTATCTCCCTGAAATTGCAGTGGAGCAGGTTGAATC
Done.