Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 22 of 255
Found at i:5795684 original size:26 final size:26
Alignment explanation
Indices: 5795644--5795695 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
5795634 GGATAAAAAA
5795644 TGCCATTATAAATCGAGCATTAGCGG
1 TGCCATTATAAATCGAGCATTAGCGG
* *
5795670 TGCCGTTATAGATCGAGCATTAGCGG
1 TGCCATTATAAATCGAGCATTAGCGG
5795696 CGCTTTTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TGCCATTATAAATCGAGCATTAGCGG
Found at i:5795859 original size:40 final size:40
Alignment explanation
Indices: 5795804--5795905 Score: 123
Period size: 40 Copynumber: 2.5 Consensus size: 40
5795794 TTTAGTGGCT
* * *
5795804 TTAGCGTCGCTTTTTAAAAAACGTCACTATAGATCAAGCA
1 TTAGCGGCGCTTTTTAAAAAACGCCACTATAGATCAACCA
* * * *
5795844 TTAGCGGCGCTTTTTAAAAAATGCCGCTATAGGTCGACCA
1 TTAGCGGCGCTTTTTAAAAAACGCCACTATAGATCAACCA
* *
5795884 TTAGTGGCGCTTTTTGAAAAAC
1 TTAGCGGCGCTTTTTAAAAAAC
5795906 ACTGCAAAAA
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 52 1.00
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (40 bp):
TTAGCGGCGCTTTTTAAAAAACGCCACTATAGATCAACCA
Found at i:5795952 original size:104 final size:104
Alignment explanation
Indices: 5795841--5796030 Score: 283
Period size: 104 Copynumber: 1.8 Consensus size: 104
5795831 TATAGATCAA
* * **
5795841 GCATTAGCGGCGCTTTTTAAAAAATGCCGCTATAGGTCGACCATTAGTGGCGCTTTTTGAAAAAC
1 GCATTAGCAGCGCTTTTTAAAAAACGCCGCTATAGGTCGACCATTAGCAGCGCTTTTTGAAAAAC
*
5795906 A-CTGCAAAAAAATTAAACACAGGCCGTTGAGCTTTAATG
66 ATC-ACAAAAAAATTAAACACAGGCCGTTGAGCTTTAATG
* * *
5795945 GCATTAGCAGTGCTTTTTGAAAAACGCCGCTATAGGTTGACCATTAGCAGCGCTTTTTGAAAAAC
1 GCATTAGCAGCGCTTTTTAAAAAACGCCGCTATAGGTCGACCATTAGCAGCGCTTTTTGAAAAAC
*
5796010 ATCACAAAAAAATTAAGCACA
66 ATCACAAAAAAATTAAACACA
5796031 ACGCCGTCGT
Statistics
Matches: 76, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
104 75 0.99
105 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.26
Consensus pattern (104 bp):
GCATTAGCAGCGCTTTTTAAAAAACGCCGCTATAGGTCGACCATTAGCAGCGCTTTTTGAAAAAC
ATCACAAAAAAATTAAACACAGGCCGTTGAGCTTTAATG
Found at i:5795960 original size:155 final size:154
Alignment explanation
Indices: 5795676--5795960 Score: 378
Period size: 155 Copynumber: 1.8 Consensus size: 154
5795666 GCGGTGCCGT
* * * *
5795676 TATAGATCGAGCATTAGCGGCGCTTTTTAAAAAATGTCGTTATAAGTCGACCATTGGTAGCGCTT
1 TATAGATCAAGCATTAGCGGCGCTTTTTAAAAAATGCCGCTATAAGTCGACCATTAGTAGCGCTT
* * * * * * *
5795741 TTTGAAAAACACCGCAAAAAAATTAAGCACAATGCCGTCGTTTTATGTTGAGCTTTAGTGGCTTT
66 TTTGAAAAACACCGCAAAAAAATTAAACACAAGGCCGTAGCTTTA-GATGAGCATTAGAGGCTTT
5795806 AGCGTCGCTTTTTAAAAAACGTCAC
130 AGCGTCGCTTTTTAAAAAACGTCAC
* *
5795831 TATAGATCAAGCATTAGCGGCGCTTTTTAAAAAATGCCGCTATAGGTCGACCATTAGTGGCGCTT
1 TATAGATCAAGCATTAGCGGCGCTTTTTAAAAAATGCCGCTATAAGTCGACCATTAGTAGCGCTT
*
5795896 TTTGAAAAACACTGCAAAAAAATTAAACAC-AGGCCGTTGAGCTTTA-ATG-GCATTAGCAGTGC
66 TTTGAAAAACACCGCAAAAAAATTAAACACAAGGCCG-T-AGCTTTAGATGAGCATTAG-AG-GC
5795958 TTT
127 TTT
5795961 TTGAAAAACG
Statistics
Matches: 112, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
153 6 0.05
154 8 0.07
155 93 0.83
156 5 0.04
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.30
Consensus pattern (154 bp):
TATAGATCAAGCATTAGCGGCGCTTTTTAAAAAATGCCGCTATAAGTCGACCATTAGTAGCGCTT
TTTGAAAAACACCGCAAAAAAATTAAACACAAGGCCGTAGCTTTAGATGAGCATTAGAGGCTTTA
GCGTCGCTTTTTAAAAAACGTCAC
Found at i:5796117 original size:40 final size:40
Alignment explanation
Indices: 5796060--5796243 Score: 190
Period size: 40 Copynumber: 4.6 Consensus size: 40
5796050 AGCTTTAGTT
* * *
5796060 GCATTAGCGACGCTTTTTGAAAAACGCCGCTATATATCGA
1 GCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGATTGA
** * *
5796100 GCATTAGCGGCTTTTTTTGAAAAAAAGCCGCTATAGGTTGA
1 GCATTAGCGGCGCTTTTTG-AAAAACGCCGCTATAGATTGA
** *
5796141 -CTATTAGCAACGCTTTTTGAAAAACGCTGCTATAGATTGA
1 GC-ATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGATTGA
* * ** *
5796181 GCATTAGCGGTGCTTTTTAAAAAATTCCACTATAGATTGA
1 GCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGATTGA
* *
5796221 CCATTAGCGGTGCTTTTTGAAAA
1 GCATTAGCGGCGCTTTTTGAAAA
5796244 GTGCTTCAAA
Statistics
Matches: 117, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
40 86 0.74
41 31 0.26
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.32
Consensus pattern (40 bp):
GCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGATTGA
Found at i:5796158 original size:81 final size:80
Alignment explanation
Indices: 5796061--5796243 Score: 233
Period size: 81 Copynumber: 2.3 Consensus size: 80
5796051 GCTTTAGTTG
* *
5796061 CATTAGCGACGCTTTTTGAAAAACGCCGCTATATATCGAGCATTAGCGGCT-TTTTTTGAAAAAA
1 CATTAGCGACGCTTTTTGAAAAACGCCGCTATAGATCGAGCATTAGCGG-TGCTTTTT-AAAAAA
* *
5796125 AGCCGCTATAGGTTGAC
64 AGCCACTATAGATTGAC
* * * * **
5796142 TATTAGCAACGCTTTTTGAAAAACGCTGCTATAGATTGAGCATTAGCGGTGCTTTTTAAAAAATT
1 CATTAGCGACGCTTTTTGAAAAACGCCGCTATAGATCGAGCATTAGCGGTGCTTTTTAAAAAAAG
5796207 CCACTATAGATTGAC
66 CCACTATAGATTGAC
**
5796222 CATTAGCGGTGCTTTTTGAAAA
1 CATTAGCGACGCTTTTTGAAAA
5796244 GTGCTTCAAA
Statistics
Matches: 87, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
80 38 0.44
81 49 0.56
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (80 bp):
CATTAGCGACGCTTTTTGAAAAACGCCGCTATAGATCGAGCATTAGCGGTGCTTTTTAAAAAAAG
CCACTATAGATTGAC
Found at i:5796350 original size:153 final size:153
Alignment explanation
Indices: 5796143--5796423 Score: 382
Period size: 153 Copynumber: 1.8 Consensus size: 153
5796133 TAGGTTGACT
* * * ** *
5796143 ATTAGCAACGCTTTTTGAAAAACGCTGCTATAGATTGAGCATTAGCGGTGCTTTTTAAAAAATTC
1 ATTAGCAACGCTTTTTGAAAAACGCCGCTATAGATCGAACATTAGCGGCACTTTTTAAAAAATGC
* * * **
5796208 CACTATAGATTGACCATTAGCGGTGCTTTTTGAAAAGTGCTTCAAAAAAATTAAGCACAACGCCG
66 CACTATAGATCGACCATTAGCGGTGCTTTTTAAAAAATGCCGCAAAAAAATTAAGCACAACGCCG
5796273 TCGTTTTATGTTGCTTTAGTGGC
131 TCGTTTTATGTTGCTTTAGTGGC
* * *
5796296 ATTAGCGACGTTTTTTGAAAAACGCCGCTATAGATCGAACATTAGCTGCACTTTTTAAAAAATGC
1 ATTAGCAACGCTTTTTGAAAAACGCCGCTATAGATCGAACATTAGCGGCACTTTTTAAAAAATGC
** * * * *
5796361 TGCTATAGGTCGACCTTTAGTGGTGCTTTTTAAAAAATGCCGCAAAAAAATTAAGTACAACGC
66 CACTATAGATCGACCATTAGCGGTGCTTTTTAAAAAATGCCGCAAAAAAATTAAGCACAACGC
5796424 TGCAATTTGC
Statistics
Matches: 108, Mismatches: 20, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
153 108 1.00
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Consensus pattern (153 bp):
ATTAGCAACGCTTTTTGAAAAACGCCGCTATAGATCGAACATTAGCGGCACTTTTTAAAAAATGC
CACTATAGATCGACCATTAGCGGTGCTTTTTAAAAAATGCCGCAAAAAAATTAAGCACAACGCCG
TCGTTTTATGTTGCTTTAGTGGC
Found at i:5798652 original size:43 final size:43
Alignment explanation
Indices: 5798605--5798776 Score: 125
Period size: 43 Copynumber: 4.0 Consensus size: 43
5798595 CTAAATATCA
* * ** *
5798605 TGTTCTATAGCGATATTTTTAGGAAAAGTGCCGCTAAAGGTCT
1 TGTTCTATAGCGACATTTGTAGGAAAAACGCCACTAAAGGTCT
* * *
5798648 TGTTCTATAGCGGCGTTTGTGGGAAAAACGCCACTAAAGGTCT
1 TGTTCTATAGCGACATTTGTAGGAAAAACGCCACTAAAGGTCT
* * * * * * *
5798691 TGTTCTACAGTGGCGTTTGT--GAAAAATTGCCGCTAAAGGTCA
1 TGTTCTATAGCGACATTTGTAGGAAAAA-CGCCACTAAAGGTCT
* * *
5798733 TGTTCTATTTAGCGGCGTTTGT-GGAAAAAGCGCCGCTAAAGGTC
1 TGTTCTA--TAGCGACATTTGTAGGAAAAA-CGCCACTAAAGGTC
5798777 ATAGGCCACA
Statistics
Matches: 108, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
41 6 0.06
42 19 0.18
43 53 0.49
44 11 0.10
45 19 0.18
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.31
Consensus pattern (43 bp):
TGTTCTATAGCGACATTTGTAGGAAAAACGCCACTAAAGGTCT
Found at i:5798814 original size:15 final size:15
Alignment explanation
Indices: 5798794--5798843 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
5798784 ACACATTTTT
5798794 GCGGCGTTAGCTATA
1 GCGGCGTTAGCTATA
* *
5798809 GCGGCGTT---TTTT
1 GCGGCGTTAGCTATA
*
5798821 GCGGTGTTAGCTATA
1 GCGGCGTTAGCTATA
5798836 GCGGCGTT
1 GCGGCGTT
5798844 TTTTGCGGCG
Statistics
Matches: 26, Mismatches: 6, Indels: 6
0.68 0.16 0.16
Matches are distributed among these distances:
12 9 0.35
15 17 0.65
ACGTcount: A:0.12, C:0.18, G:0.36, T:0.34
Consensus pattern (15 bp):
GCGGCGTTAGCTATA
Found at i:5798820 original size:27 final size:27
Alignment explanation
Indices: 5798789--5798853 Score: 121
Period size: 27 Copynumber: 2.4 Consensus size: 27
5798779 AGGCCACACA
5798789 TTTTTGCGGCGTTAGCTATAGCGGCGT
1 TTTTTGCGGCGTTAGCTATAGCGGCGT
*
5798816 TTTTTGCGGTGTTAGCTATAGCGGCGT
1 TTTTTGCGGCGTTAGCTATAGCGGCGT
5798843 TTTTTGCGGCG
1 TTTTTGCGGCG
5798854 CTTATCAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.09, C:0.17, G:0.34, T:0.40
Consensus pattern (27 bp):
TTTTTGCGGCGTTAGCTATAGCGGCGT
Found at i:5799368 original size:34 final size:33
Alignment explanation
Indices: 5799322--5799440 Score: 177
Period size: 34 Copynumber: 3.5 Consensus size: 33
5799312 TTTTATATTT
*
5799322 TTTTTAAAAAATTAATTAAATTAGGTTTTAGAG
1 TTTTTAAAAAATTAATTAAATTAGGGTTTAGAG
5799355 TTTTTAAATAAATTAATTAAATTAGGGTTTAGAG
1 TTTTTAAA-AAATTAATTAAATTAGGGTTTAGAG
5799389 TTTTTAAGAAAATTAATTAAATTAGGGTTTAGTGAG
1 TTTTTAA-AAAATTAATTAAATTAGGGTTTA--GAG
*
5799425 TTTTTTAAAAA-TAATT
1 TTTTTAAAAAATTAATT
5799441 TTGTGTTTAG
Statistics
Matches: 80, Mismatches: 2, Indels: 7
0.90 0.02 0.08
Matches are distributed among these distances:
33 8 0.10
34 58 0.73
35 5 0.06
36 9 0.11
ACGTcount: A:0.41, C:0.00, G:0.13, T:0.45
Consensus pattern (33 bp):
TTTTTAAAAAATTAATTAAATTAGGGTTTAGAG
Found at i:5799888 original size:125 final size:125
Alignment explanation
Indices: 5799498--5799892 Score: 517
Period size: 125 Copynumber: 3.1 Consensus size: 125
5799488 ATTTTGTTTT
* * * * *
5799498 TTTTTCTACAGTAATT-TCAGAAAATTAATTTTGAGAAGACGGTTCTGAAAAGATAATGTTAAAA
1 TTTTTCTACAGTAGTTCTGA-AAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAATGTAAAAA
* * * *
5799562 ACGCTTTAAGCAGGATGCACTGTCAGCAATATTACTGAAAAAAGCTCCCATGTGGACGCTC
65 ACGCTTTAAGTAGGATGCACTGTCAGCAAAATTACTGAAAAAAACTCCCACGTGGACGCTC
*
5799623 TTTTTCTACAGTAGTTCTTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAAAGTAATTTAAA
1 TTTTTCTACAGTAGTTC-TGAAAAAATAATTTTGAGAAGACGGTTCTG-AAAAAA-TAATGTAAA
* * * * * *
5799688 AAACACTTCAAGTAGGATGCACTGTTAGCAAAATTACTGAAAAAGA-TCCCACATGGATGCTC
63 AAACGCTTTAAGTAGGATGCACTGTCAGCAAAATTACTGAAAAAAACTCCCACGTGGACGCTC
** * *
5799750 TTTTTCTACAGTAGTATCTGAAAAAATAATTTTGAGAAGACTATTATGAAAAAATAGTGTAAAAA
1 TTTTTCTACAGTAGT-TCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAATGTAAAAA
* **
5799815 ACGCTTTAAGTAGGATGCACTATCAGCAAAATTACT-AAAAAAACTCCCACGTATACGCTC
65 ACGCTTTAAGTAGGATGCACTGTCAGCAAAATTACTGAAAAAAACTCCCACGTGGACGCTC
5799875 TTTTTCTACAGTAGTTCT
1 TTTTTCTACAGTAGTTCT
5799893 TATTTGGCCT
Statistics
Matches: 234, Mismatches: 30, Indels: 13
0.84 0.11 0.05
Matches are distributed among these distances:
124 9 0.04
125 83 0.35
126 32 0.14
127 62 0.26
128 48 0.21
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.30
Consensus pattern (125 bp):
TTTTTCTACAGTAGTTCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAATGTAAAAAA
CGCTTTAAGTAGGATGCACTGTCAGCAAAATTACTGAAAAAAACTCCCACGTGGACGCTC
Found at i:5806076 original size:32 final size:32
Alignment explanation
Indices: 5806015--5806077 Score: 76
Period size: 32 Copynumber: 2.0 Consensus size: 32
5806005 ACTAAGTGTG
**
5806015 TATATATGTGTAGTTGGATAAAGTTGAATGTC
1 TATATATGTGTAGTTGGATAAAGCCGAATGTC
5806047 TATATATGTGT-GATTGGATATAA-CCGAATGT
1 TATATATGTGTAG-TTGGATA-AAGCCGAATGT
5806078 GTATCCAGGT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
31 1 0.04
32 24 0.89
33 2 0.07
ACGTcount: A:0.32, C:0.05, G:0.24, T:0.40
Consensus pattern (32 bp):
TATATATGTGTAGTTGGATAAAGCCGAATGTC
Found at i:5813087 original size:19 final size:19
Alignment explanation
Indices: 5813055--5813098 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
5813045 TATTTATATT
*
5813055 TATTTTAGATAA-TTAATA
1 TATTTTAGAAAATTTAATA
5813073 TATTATTAGAAAATTTAATA
1 TATT-TTAGAAAATTTAATA
5813093 TATTTT
1 TATTTT
5813099 GTTCCATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 4 0.17
19 9 0.39
20 10 0.43
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (19 bp):
TATTTTAGAAAATTTAATA
Found at i:5818421 original size:16 final size:16
Alignment explanation
Indices: 5818400--5818435 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
5818390 AGTATTCATC
5818400 ATCTTCATTCTCTTCT
1 ATCTTCATTCTCTTCT
5818416 ATCTTCATTCTCTTCT
1 ATCTTCATTCTCTTCT
5818432 ATCT
1 ATCT
5818436 ACAACCGTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.14, C:0.31, G:0.00, T:0.56
Consensus pattern (16 bp):
ATCTTCATTCTCTTCT
Found at i:5823451 original size:40 final size:40
Alignment explanation
Indices: 5823401--5823569 Score: 223
Period size: 40 Copynumber: 4.1 Consensus size: 40
5823391 CTCGATATAT
5823401 TATATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAA
1 TATATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAA
*
5823441 TATATATCCGGGTCAAATCCCGCAGGCTTCATGCTGGTAATATA
1 TATATATCCGGGTTAAATCCCGCAGGCTTCATGCTGG---TA-A
* * *
5823485 TATATATCCGGGTTAAATTCCGTAGGCTTCGTGCTGGTAA
1 TATATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAA
* * *
5823525 TATATATCCAGGTTAAATCCTGCAGGCTT-AGTGCTGGTAC
1 TATATATCCGGGTTAAATCCCGCAGGCTTCA-TGCTGGTAA
5823565 TATAT
1 TATAT
5823570 CCAGGCTTAA
Statistics
Matches: 113, Mismatches: 11, Indels: 10
0.84 0.08 0.07
Matches are distributed among these distances:
40 75 0.66
41 2 0.02
43 2 0.02
44 34 0.30
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (40 bp):
TATATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAA
Found at i:5823543 original size:84 final size:84
Alignment explanation
Indices: 5823395--5823569 Score: 262
Period size: 84 Copynumber: 2.1 Consensus size: 84
5823385 TTAGCTCTCG
*
5823395 ATATATTATATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAATATATATCCGGGTCAAATC
1 ATATA-TATATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAATATATATCCAGGTCAAATC
5823460 CCGCAGGCTTCA-TGCTGGTA
65 CCGCAGGCTT-AGTGCTGGTA
* * * *
5823480 ATATATATATATCCGGGTTAAATTCCGTAGGCTTCGTGCTGGTAATATATATCCAGGTTAAATCC
1 ATATATATATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAATATATATCCAGGTCAAATCC
*
5823545 TGCAGGCTTAGTGCTGGTA
66 CGCAGGCTTAGTGCTGGTA
*
5823564 CTATAT
1 ATATAT
5823570 CCAGGCTTAA
Statistics
Matches: 82, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
83 1 0.01
84 76 0.93
85 5 0.06
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.33
Consensus pattern (84 bp):
ATATATATATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAATATATATCCAGGTCAAATCC
CGCAGGCTTAGTGCTGGTA
Found at i:5831263 original size:40 final size:40
Alignment explanation
Indices: 5831213--5831337 Score: 171
Period size: 40 Copynumber: 3.1 Consensus size: 40
5831203 CTCGATATAT
5831213 TATATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAA
1 TATATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAA
* * * * *
5831253 TATATATCCGGGTTATATTCCACAGGCTTCGTGTTGGTAA
1 TATATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAA
* *
5831293 TATATATCCGGGTTAAATCCTGCAGGCTT-AGTGCTGGTAC
1 TATATATCCGGGTTAAATCCCGCAGGCTTCA-TGCTGGTAA
5831333 TATAT
1 TATAT
5831338 CCAGGCCTAA
Statistics
Matches: 72, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
40 72 1.00
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.34
Consensus pattern (40 bp):
TATATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAA
Found at i:5846580 original size:39 final size:40
Alignment explanation
Indices: 5846536--5846659 Score: 162
Period size: 40 Copynumber: 3.1 Consensus size: 40
5846526 CTCGATATAT
5846536 TATATATCCGGGTTAAATCCCGCA-GCTTCATGCTGGTAA
1 TATATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAA
* * * * *
5846575 TATATATCCGGGTTATATTCCACAGGCTTCGTGTTGGTAA
1 TATATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAA
* *
5846615 TATATATCCGGGTTAAATCCTGCAGGCTT-AGTGCTGGTAC
1 TATATATCCGGGTTAAATCCCGCAGGCTTCA-TGCTGGTAA
5846655 TATAT
1 TATAT
5846660 CCAGGCCTAA
Statistics
Matches: 71, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
39 21 0.30
40 50 0.70
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.35
Consensus pattern (40 bp):
TATATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAA
Found at i:5855844 original size:21 final size:21
Alignment explanation
Indices: 5855815--5855860 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
5855805 TGTCCTAGGA
*
5855815 CGATGATGGGCAAATCTCATG
1 CGATAATGGGCAAATCTCATG
*
5855836 CGATAATGGGTAAATCTCATG
1 CGATAATGGGCAAATCTCATG
5855857 CGAT
1 CGAT
5855861 GATGAGTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (21 bp):
CGATAATGGGCAAATCTCATG
Found at i:5855968 original size:23 final size:23
Alignment explanation
Indices: 5855950--5855994 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
5855940 CATATTTTGT
5855950 AGAGCATTTGTGGTGTATTCTGA
1 AGAGCATTTGTGGTGTATTCTGA
* *
5855973 ATAGCGTTTGTGGTGTATTCTG
1 AGAGCATTTGTGGTGTATTCTG
5855995 TCTGGACTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.18, C:0.09, G:0.31, T:0.42
Consensus pattern (23 bp):
AGAGCATTTGTGGTGTATTCTGA
Found at i:5861446 original size:15 final size:16
Alignment explanation
Indices: 5861428--5861472 Score: 56
Period size: 17 Copynumber: 2.8 Consensus size: 16
5861418 TAATAATTAT
5861428 TAAAAT-TTAAATATA
1 TAAAATATTAAATATA
5861443 TAAAATCATTAAATATA
1 TAAAAT-ATTAAATATA
*
5861460 TGAAAAAATTAAA
1 T-AAAATATTAAA
5861473 GATAAAAGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
15 6 0.23
17 16 0.62
18 4 0.15
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (16 bp):
TAAAATATTAAATATA
Found at i:5862430 original size:18 final size:17
Alignment explanation
Indices: 5862391--5862432 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
5862381 TGTATATAAA
5862391 TAATTAAAATTAAAATT
1 TAATTAAAATTAAAATT
*
5862408 GAATTAATAACTT-AAATT
1 TAATTAA-AA-TTAAAATT
5862426 TAATTAA
1 TAATTAA
5862433 CTAAATGTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 6 0.29
18 13 0.62
19 2 0.10
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (17 bp):
TAATTAAAATTAAAATT
Found at i:5868297 original size:46 final size:46
Alignment explanation
Indices: 5868230--5868492 Score: 391
Period size: 46 Copynumber: 5.7 Consensus size: 46
5868220 TGGCAACCTG
5868230 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
5868276 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
5868322 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* *
5868368 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* ** * * **
5868414 AGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAAAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* * * * *
5868460 TGAGAAAGACCATAGTTGAAAGACACTATGGCA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA
5868493 TCACGTCAAA
Statistics
Matches: 201, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 201 1.00
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
Found at i:5868424 original size:138 final size:130
Alignment explanation
Indices: 5868181--5868492 Score: 417
Period size: 138 Copynumber: 2.3 Consensus size: 130
5868171 AGTGTGCTCT
*
5868181 CTGATATGAAATGTGTAAGACAATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
* * **
5868246 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAACCTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
5868311 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGATGTGTAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----T--G-TGTGTAAG
*
5868376 ACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGATACC
58 ACCATGGTTGAAAGATACCATGGCAACCTGACATGAAAAGAATAAGACCATGGTTGAAAGATACC
5868441 ATGGCAAC
123 ATGGCAAC
* * ** * * * * *
5868449 ATGACAAAAAATGAGAAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
5868493 TCACGTCAAA
Statistics
Matches: 159, Mismatches: 15, Indels: 8
0.87 0.08 0.04
Matches are distributed among these distances:
130 46 0.29
135 1 0.01
137 1 0.01
138 111 0.70
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (130 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
TGAAAGATACCATGGCAACCTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:5873661 original size:46 final size:46
Alignment explanation
Indices: 5873594--5873810 Score: 299
Period size: 46 Copynumber: 4.7 Consensus size: 46
5873584 TGGCAACCTG
*
5873594 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
* *
5873640 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
**
5873686 TGTGTAAGACCATGGTTGAAAGATACCATGGCAATGTGACATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
* ** * **
5873732 AGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAAAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
* * * *
5873778 TGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA
5873811 TCACGTCAAA
Statistics
Matches: 154, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 154 1.00
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
Found at i:5875845 original size:10 final size:10
Alignment explanation
Indices: 5875832--5875866 Score: 61
Period size: 10 Copynumber: 3.5 Consensus size: 10
5875822 TTAGTACTTA
5875832 TTTTTTTTCT
1 TTTTTTTTCT
5875842 TTTTTTTTCT
1 TTTTTTTTCT
*
5875852 CTTTTTTTCT
1 TTTTTTTTCT
5875862 TTTTT
1 TTTTT
5875867 AAAAAAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (10 bp):
TTTTTTTTCT
Found at i:5876221 original size:118 final size:118
Alignment explanation
Indices: 5875997--5876227 Score: 390
Period size: 118 Copynumber: 2.0 Consensus size: 118
5875987 TATTTCCGGT
*
5875997 TAGCGGAGTTTTACTTGTCACGTCACACAACTTTTTGACACGAAGTAGAATGACAACCCAAGCAC
1 TAGCGGAGTTTTACTTGTCACGTCACACAACTTTTTAACACGAAGTAGAATGACAACCCAAGCAC
* * * *
5876062 CCTACCCCGGTTACTCAGTCAGTCACGATTTGAGCCATACTCATAACCTCGGC
66 CCTACCCCAGTTACTCAGTCAGTCACGATCTAAACCATACTCATAACCTCGGC
*
5876115 TAGCGGAGTTTTACTTGTCACGTCACACAACTTTTTAACGCGAAGTAGAATGACAACCCAAGCAC
1 TAGCGGAGTTTTACTTGTCACGTCACACAACTTTTTAACACGAAGTAGAATGACAACCCAAGCAC
**
5876180 CCTACCCCAGTTACTCAGTCAGTCACGATCTAAACTGTACTCATAACC
66 CCTACCCCAGTTACTCAGTCAGTCACGATCTAAACCATACTCATAACC
5876228 ATGGAAAACT
Statistics
Matches: 105, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
118 105 1.00
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.25
Consensus pattern (118 bp):
TAGCGGAGTTTTACTTGTCACGTCACACAACTTTTTAACACGAAGTAGAATGACAACCCAAGCAC
CCTACCCCAGTTACTCAGTCAGTCACGATCTAAACCATACTCATAACCTCGGC
Found at i:5877089 original size:42 final size:42
Alignment explanation
Indices: 5877015--5877095 Score: 117
Period size: 42 Copynumber: 1.9 Consensus size: 42
5877005 GGGATTCTAA
* *
5877015 GGCTGGAATAGGACTGTTTGGCTGCAGAGATATAGCATTCTG
1 GGCTGGAATAGAACTGTTTGGCAGCAGAGATATAGCATTCTG
* * *
5877057 GGCTGGAATAGAACTGTTTGGCAGTAGGGATATGGCATT
1 GGCTGGAATAGAACTGTTTGGCAGCAGAGATATAGCATT
5877096 TTGGTGCACA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.25, C:0.12, G:0.35, T:0.28
Consensus pattern (42 bp):
GGCTGGAATAGAACTGTTTGGCAGCAGAGATATAGCATTCTG
Found at i:5877204 original size:7 final size:7
Alignment explanation
Indices: 5877192--5877222 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
5877182 AAATAAAATA
5877192 AAATAAT
1 AAATAAT
5877199 AAATAAT
1 AAATAAT
5877206 AAATAAT
1 AAATAAT
5877213 AAATAAT
1 AAATAAT
5877220 AAA
1 AAA
5877223 AGAAAAGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (7 bp):
AAATAAT
Found at i:5877248 original size:7 final size:6
Alignment explanation
Indices: 5877181--5877255 Score: 53
Period size: 7 Copynumber: 11.3 Consensus size: 6
5877171 ATATTTAACT
*
5877181 AAAAT- AAAATAA AATAATA AATAATA AATAATA AATAATA AAAGAAA
1 AAAATA AAAAT-A AA-AATA AA-AATA AA-AATA AA-AATA AAA-ATA
*
5877228 AGAAAGA AAAATA ATAAATA AAAATA AA
1 A-AAATA AAAATA A-AAATA AAAATA AA
5877256 GATTGGGTTG
Statistics
Matches: 61, Mismatches: 3, Indels: 11
0.81 0.04 0.15
Matches are distributed among these distances:
5 5 0.08
6 13 0.21
7 38 0.62
8 5 0.08
ACGTcount: A:0.77, C:0.00, G:0.04, T:0.19
Consensus pattern (6 bp):
AAAATA
Found at i:5877251 original size:14 final size:14
Alignment explanation
Indices: 5877191--5877251 Score: 61
Period size: 14 Copynumber: 4.2 Consensus size: 14
5877181 AAAATAAAAT
5877191 AAAATAATAAATAA
1 AAAATAATAAATAA
*
5877205 TAAATAATAAATAA
1 AAAATAATAAATAA
* *
5877219 TAAAAGAA-AAGAAAGA
1 -AAAATAATAA-ATA-A
5877235 AAAATAATAAATAA
1 AAAATAATAAATAA
5877249 AAA
1 AAA
5877252 TAAAGATTGG
Statistics
Matches: 37, Mismatches: 6, Indels: 8
0.73 0.12 0.16
Matches are distributed among these distances:
14 19 0.51
15 15 0.41
16 3 0.08
ACGTcount: A:0.77, C:0.00, G:0.05, T:0.18
Consensus pattern (14 bp):
AAAATAATAAATAA
Found at i:5880834 original size:15 final size:15
Alignment explanation
Indices: 5880807--5880852 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
5880797 GAAAGCAAAT
5880807 AAAATTATGGAAA-A
1 AAAATTATGGAAAGA
*
5880821 AAAATTTATTGAAAGA
1 AAAA-TTATGGAAAGA
*
5880837 AAAAATATGGAAAGA
1 AAAATTATGGAAAGA
5880852 A
1 A
5880853 CAAAAGACTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
14 4 0.15
15 18 0.67
16 5 0.19
ACGTcount: A:0.63, C:0.00, G:0.15, T:0.22
Consensus pattern (15 bp):
AAAATTATGGAAAGA
Found at i:5892575 original size:14 final size:15
Alignment explanation
Indices: 5892548--5892576 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
5892538 TCTCAAAGGG
5892548 TTGACATGACATATT
1 TTGACATGACATATT
5892563 TTGACAT-ACATATT
1 TTGACATGACATATT
5892577 GAGTAGTCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.34, C:0.14, G:0.10, T:0.41
Consensus pattern (15 bp):
TTGACATGACATATT
Found at i:5898975 original size:4 final size:4
Alignment explanation
Indices: 5898953--5898992 Score: 53
Period size: 4 Copynumber: 9.5 Consensus size: 4
5898943 ACTCAACAAA
*
5898953 ATTT ATTT GTTT GATTTT ATTT ATTT ATTT ATTT ATTT AT
1 ATTT ATTT ATTT -A-TTT ATTT ATTT ATTT ATTT ATTT AT
5898993 AACTTGGCAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
4 28 0.88
5 1 0.03
6 3 0.09
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.72
Consensus pattern (4 bp):
ATTT
Found at i:5910151 original size:30 final size:30
Alignment explanation
Indices: 5910115--5910174 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
5910105 ATTTCAAGAT
5910115 AAAAGAAAAGCTAAAGTTGTTGATAAATAG
1 AAAAGAAAAGCTAAAGTTGTTGATAAATAG
5910145 AAAAGAAAAGCTAAAGTTGTTGATAAATAG
1 AAAAGAAAAGCTAAAGTTGTTGATAAATAG
5910175 TTGCTTCTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.53, C:0.03, G:0.20, T:0.23
Consensus pattern (30 bp):
AAAAGAAAAGCTAAAGTTGTTGATAAATAG
Found at i:5912090 original size:7 final size:7
Alignment explanation
Indices: 5912078--5912103 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
5912068 CGAAATCGGA
5912078 ATCGGTG
1 ATCGGTG
5912085 ATCGGTG
1 ATCGGTG
5912092 ATCGGTG
1 ATCGGTG
5912099 ATCGG
1 ATCGG
5912104 ATTGGAATCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.15, C:0.15, G:0.42, T:0.27
Consensus pattern (7 bp):
ATCGGTG
Found at i:5913693 original size:46 final size:46
Alignment explanation
Indices: 5913586--5913756 Score: 191
Period size: 46 Copynumber: 3.6 Consensus size: 46
5913576 TTTGATATGA
* * * *
5913586 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTC-T--T-ATTC-TTTTCATGTCACGT
*
5913636 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACAT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
** * * * *
5913682 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATTAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
5913728 TGCCATGGTATCTTTCAACCATGGTCTTA
1 TGCCATGGTATCTTTCAACCATGGTCTTA
5913757 CACATTTCAT
Statistics
Matches: 108, Mismatches: 12, Indels: 6
0.86 0.10 0.05
Matches are distributed among these distances:
45 5 0.05
46 78 0.72
47 1 0.01
49 1 0.01
50 23 0.21
ACGTcount: A:0.20, C:0.23, G:0.15, T:0.42
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
Found at i:5913757 original size:46 final size:46
Alignment explanation
Indices: 5913634--5913770 Score: 211
Period size: 46 Copynumber: 3.0 Consensus size: 46
5913624 TTTCTGTCAT
** * *
5913634 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAC
* * *
5913680 ATTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATTAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAC
5913726 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
5913771 GAGAGCACAC
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 82 1.00
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.40
Consensus pattern (46 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAC
Found at i:5917698 original size:27 final size:27
Alignment explanation
Indices: 5917668--5917719 Score: 104
Period size: 27 Copynumber: 1.9 Consensus size: 27
5917658 TCAATCGGAT
5917668 TAAGCAACTCTAGTTCTCAAAGGGTTG
1 TAAGCAACTCTAGTTCTCAAAGGGTTG
5917695 TAAGCAACTCTAGTTCTCAAAGGGT
1 TAAGCAACTCTAGTTCTCAAAGGGT
5917720 CGTGGGCGAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (27 bp):
TAAGCAACTCTAGTTCTCAAAGGGTTG
Found at i:5923689 original size:10 final size:10
Alignment explanation
Indices: 5923674--5923698 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
5923664 AAGCAAGGAA
5923674 AGAAAGTAAC
1 AGAAAGTAAC
5923684 AGAAAGTAAC
1 AGAAAGTAAC
5923694 AGAAA
1 AGAAA
5923699 AATAACTACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.64, C:0.08, G:0.20, T:0.08
Consensus pattern (10 bp):
AGAAAGTAAC
Found at i:5928015 original size:10 final size:10
Alignment explanation
Indices: 5928000--5928024 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
5927990 AAGCAAGGAA
5928000 AGAAAGTAAC
1 AGAAAGTAAC
5928010 AGAAAGTAAC
1 AGAAAGTAAC
5928020 AGAAA
1 AGAAA
5928025 AATAACTACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.64, C:0.08, G:0.20, T:0.08
Consensus pattern (10 bp):
AGAAAGTAAC
Found at i:5935293 original size:26 final size:26
Alignment explanation
Indices: 5935264--5935322 Score: 111
Period size: 26 Copynumber: 2.3 Consensus size: 26
5935254 TAGGAGGTGC
5935264 AGATTTTGCACCTAAAATTGACTTGA
1 AGATTTTGCACCTAAAATTGACTTGA
5935290 AGATTTTGCACCTAAAATTGACTTGA
1 AGATTTTGCACCTAAAATTGACTTGA
5935316 A-ATTTTG
1 AGATTTTG
5935323 GCATGGGATA
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 6 0.18
26 27 0.82
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.37
Consensus pattern (26 bp):
AGATTTTGCACCTAAAATTGACTTGA
Found at i:5945585 original size:37 final size:37
Alignment explanation
Indices: 5945543--5945618 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
5945533 CAAGTGAAAT
5945543 TTATTTAGAATTAATTAAACAATTACAAATTTAACTA
1 TTATTTAGAATTAATTAAACAATTACAAATTTAACTA
5945580 TTATTTAGAATTAATTAAACAATTACAAATTTAACTA
1 TTATTTAGAATTAATTAAACAATTACAAATTTAACTA
5945617 TT
1 TT
5945619 TTAATTGAGA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.47, C:0.08, G:0.03, T:0.42
Consensus pattern (37 bp):
TTATTTAGAATTAATTAAACAATTACAAATTTAACTA
Found at i:5947397 original size:15 final size:16
Alignment explanation
Indices: 5947379--5947423 Score: 56
Period size: 17 Copynumber: 2.8 Consensus size: 16
5947369 TAATAATTAT
5947379 TAAAAT-TTAAATATA
1 TAAAATATTAAATATA
5947394 TAAAATCATTAAATATA
1 TAAAAT-ATTAAATATA
*
5947411 TGAAAAAATTAAA
1 T-AAAATATTAAA
5947424 GATAAAAGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
15 6 0.23
17 16 0.62
18 4 0.15
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (16 bp):
TAAAATATTAAATATA
Found at i:5948386 original size:18 final size:17
Alignment explanation
Indices: 5948347--5948388 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
5948337 TATATATAAA
5948347 TAATTAAAATTAAAATT
1 TAATTAAAATTAAAATT
*
5948364 GAATTAATAAGTT-AAATT
1 TAATTAA-AA-TTAAAATT
5948382 TAATTAA
1 TAATTAA
5948389 CTTAATATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 6 0.29
18 13 0.62
19 2 0.10
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (17 bp):
TAATTAAAATTAAAATT
Found at i:5948890 original size:18 final size:18
Alignment explanation
Indices: 5948867--5948911 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
5948857 AGGGACTAAA
*
5948867 TTGAATAAATTATAATGT
1 TTGAATAAATTATAATGC
*
5948885 TTGAATAAATTGTAATGC
1 TTGAATAAATTATAATGC
5948903 TTGAATAAA
1 TTGAATAAA
5948912 ATGACAATTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.44, C:0.02, G:0.13, T:0.40
Consensus pattern (18 bp):
TTGAATAAATTATAATGC
Found at i:5951839 original size:28 final size:28
Alignment explanation
Indices: 5951808--5951865 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
5951798 TCCTTTTCGC
5951808 CCCTTTTCTCTTCTCCC-TTCATCTTCTT
1 CCCTTTTCT-TTCTCCCTTTCATCTTCTT
* *
5951836 CCCTTTTCTTTTTCCCTTTCTTCTTCTT
1 CCCTTTTCTTTCTCCCTTTCATCTTCTT
5951864 CC
1 CC
5951866 TCTACCCCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 6 0.22
28 21 0.78
ACGTcount: A:0.02, C:0.41, G:0.00, T:0.57
Consensus pattern (28 bp):
CCCTTTTCTTTCTCCCTTTCATCTTCTT
Found at i:5951857 original size:12 final size:13
Alignment explanation
Indices: 5951816--5951861 Score: 51
Period size: 13 Copynumber: 3.6 Consensus size: 13
5951806 GCCCCTTTTC
*
5951816 TCTTC-TCCCTTCA
1 TCTTCTTCCCTT-T
5951829 TCTTCTTCCCTTT
1 TCTTCTTCCCTTT
*
5951842 TCTTTTTCCC-TT
1 TCTTCTTCCCTTT
5951854 TCTTCTTC
1 TCTTCTTC
5951862 TTCCTCTACC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
12 9 0.31
13 14 0.48
14 6 0.21
ACGTcount: A:0.02, C:0.39, G:0.00, T:0.59
Consensus pattern (13 bp):
TCTTCTTCCCTTT
Found at i:5952031 original size:13 final size:13
Alignment explanation
Indices: 5952015--5952039 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
5952005 TTTATATATT
5952015 TATTTTATTTTTC
1 TATTTTATTTTTC
5952028 TATTTTATTTTT
1 TATTTTATTTTT
5952040 AGTTTAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.00, T:0.80
Consensus pattern (13 bp):
TATTTTATTTTTC
Found at i:5953555 original size:7 final size:6
Alignment explanation
Indices: 5953538--5953595 Score: 55
Period size: 6 Copynumber: 9.7 Consensus size: 6
5953528 GTCCATTTGT
* * **
5953538 TTTTTA TTTTTA TCTTTTG TTTTTC GCTTTA TTTTTA TTTTTA -TTTTA
1 TTTTTA TTTTTA T-TTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
*
5953586 TGTTTA TTTT
1 TTTTTA TTTT
5953596 AAAGACTTGT
Statistics
Matches: 41, Mismatches: 9, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
5 5 0.12
6 31 0.76
7 5 0.12
ACGTcount: A:0.12, C:0.05, G:0.05, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:5956933 original size:19 final size:20
Alignment explanation
Indices: 5956894--5956933 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
5956884 ACAAAGCCCA
5956894 GACCGTGTGGCTCAAAACGT
1 GACCGTGTGGCTCAAAACGT
*
5956914 GACCGTGTGGC-CAAACCGT
1 GACCGTGTGGCTCAAAACGT
5956933 G
1 G
5956934 TCACAAACTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.23, C:0.28, G:0.33, T:0.17
Consensus pattern (20 bp):
GACCGTGTGGCTCAAAACGT
Found at i:5961016 original size:47 final size:47
Alignment explanation
Indices: 5960900--5961165 Score: 160
Period size: 46 Copynumber: 5.7 Consensus size: 47
5960890 TCATTTGTGT
**
5960900 GCTAGTGTAAGA-CATGTCTCAGACATGCATCGGCCACATT---ATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGCATCGG---CATTGAAATGAGA
* *
5960946 GTCT-GTGTAAGACCATGTTTGGGACATGGCATCGGCATTGAAACGAGA
1 G-CTAGTGTAAGACCATGTCTGGGACAT-GCATCGGCATTGAAATGAGA
* * * *
5960994 GCTAGTGTAAGA-CATGTCTGGGATATGCATCGGCCTCGAGATGTA-A
1 GCTAGTGTAAGACCATGTCTGGGACATGCATCGGCATTGAAATG-AGA
* ** * ** *
5961040 GCCAGTGTAAGA-CATGTCTAAGACATGCATCGAC-TACAAGATGTG-
1 GCTAGTGTAAGACCATGTCTGGGACATGCATCGGCATTGAA-ATGAGA
* * * * ** *
5961085 TC-AATGTAAGACCATGTCTGGGACATGGCATC-GAATCGACGTGTGA
1 GCTAGTGTAAGACCATGTCTGGGACAT-GCATCGGCATTGAAATGAGA
*
5961131 GCTAGTGTAAGACCATGTCTAGGACATGGCATCGG
1 GCTAGTGTAAGACCATGTCTGGGACAT-GCATCGG
5961166 TATCATACCC
Statistics
Matches: 172, Mismatches: 32, Indels: 30
0.74 0.14 0.13
Matches are distributed among these distances:
44 8 0.05
45 23 0.13
46 63 0.37
47 56 0.33
48 22 0.13
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (47 bp):
GCTAGTGTAAGACCATGTCTGGGACATGCATCGGCATTGAAATGAGA
Found at i:5970874 original size:21 final size:21
Alignment explanation
Indices: 5970850--5970892 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
5970840 ATTCAGCCGT
*
5970850 GTACAACAATACACGGGCGTG
1 GTACAACAACACACGGGCGTG
* *
5970871 GTACCATAACACACGGGCGTG
1 GTACAACAACACACGGGCGTG
5970892 G
1 G
5970893 GAGAAGCAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.26, G:0.30, T:0.14
Consensus pattern (21 bp):
GTACAACAACACACGGGCGTG
Found at i:5972819 original size:6 final size:6
Alignment explanation
Indices: 5972808--5972854 Score: 58
Period size: 6 Copynumber: 7.8 Consensus size: 6
5972798 TCCTCTTATC
* * * *
5972808 TTTTTA TTTTTA TTTCTA TTTCTA TTTTTA TTTATA TTTATA TTTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTT
5972855 GGTTATTATT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.19, C:0.04, G:0.00, T:0.77
Consensus pattern (6 bp):
TTTTTA
Found at i:5972835 original size:18 final size:18
Alignment explanation
Indices: 5972812--5972854 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
5972802 CTTATCTTTT
* *
5972812 TATTTTTATTTCTATTTC
1 TATTTTTATTTATATTTA
5972830 TATTTTTATTTATATTTA
1 TATTTTTATTTATATTTA
5972848 TATTTTT
1 TATTTTT
5972855 GGTTATTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (18 bp):
TATTTTTATTTATATTTA
Found at i:5972860 original size:18 final size:19
Alignment explanation
Indices: 5972812--5972865 Score: 51
Period size: 18 Copynumber: 2.9 Consensus size: 19
5972802 CTTATCTTTT
*
5972812 TATTTTTA-TT-TCTATTTC
1 TATTTTTAGTTAT-TATTTA
*
5972830 TATTTTTATTTA-TATTTA
1 TATTTTTAGTTATTATTTA
*
5972848 TATTTTTGGTTATTATTT
1 TATTTTTAGTTATTATTT
5972866 TCTTTTTAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
18 23 0.77
19 7 0.23
ACGTcount: A:0.20, C:0.04, G:0.04, T:0.72
Consensus pattern (19 bp):
TATTTTTAGTTATTATTTA
Found at i:5975731 original size:13 final size:13
Alignment explanation
Indices: 5975715--5975747 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
5975705 TTTAATTAAA
*
5975715 TTAGTTAATTAGT
1 TTAGATAATTAGT
5975728 TTAGATAATTAGT
1 TTAGATAATTAGT
5975741 TTA-ATAA
1 TTAGATAA
5975748 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:5985933 original size:14 final size:15
Alignment explanation
Indices: 5985906--5985934 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
5985896 TCTCAAAGGG
5985906 TTGACATGACATATT
1 TTGACATGACATATT
5985921 TTGACAT-ACATATT
1 TTGACATGACATATT
5985935 GAGTAGTCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.34, C:0.14, G:0.10, T:0.41
Consensus pattern (15 bp):
TTGACATGACATATT
Found at i:5993445 original size:31 final size:30
Alignment explanation
Indices: 5993369--5993447 Score: 86
Period size: 31 Copynumber: 2.6 Consensus size: 30
5993359 GAGTGCTATA
* *
5993369 TAAATCATTGTTGTCGGACAATTTGGGGTGG
1 TAAATCATCGTTGTCGG-CAATATGGGGTGG
* *
5993400 TAAACCATCATTGTCGAGCAATATGGGGTGG
1 TAAATCATCGTTGTCG-GCAATATGGGGTGG
**
5993431 TAGGTCATCGTTGTCGG
1 TAAATCATCGTTGTCGG
5993448 GCAACCTGGG
Statistics
Matches: 39, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
30 1 0.03
31 37 0.95
32 1 0.03
ACGTcount: A:0.23, C:0.14, G:0.32, T:0.32
Consensus pattern (30 bp):
TAAATCATCGTTGTCGGCAATATGGGGTGG
Found at i:6001555 original size:11 final size:11
Alignment explanation
Indices: 6001539--6001569 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
6001529 AAGTATGGGT
6001539 AGGTATGGGAA
1 AGGTATGGGAA
*
6001550 AGGTATGGGCA
1 AGGTATGGGAA
6001561 AGGTATGGG
1 AGGTATGGG
6001570 GTATGGGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.29, C:0.03, G:0.48, T:0.19
Consensus pattern (11 bp):
AGGTATGGGAA
Found at i:6005650 original size:18 final size:18
Alignment explanation
Indices: 6005623--6005679 Score: 87
Period size: 18 Copynumber: 3.2 Consensus size: 18
6005613 CCCAACTACT
* *
6005623 GTATATGTGAACAGTACC
1 GTATACGTGAATAGTACC
*
6005641 GTATACGTGAATAGTTCC
1 GTATACGTGAATAGTACC
6005659 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
6005677 GTA
1 GTA
6005680 AACGGTCGTA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.30
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:6007875 original size:14 final size:15
Alignment explanation
Indices: 6007856--6007895 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
6007846 CAAAAAGCAT
6007856 TATTTTCTTTTA-TA
1 TATTTTCTTTTATTA
6007870 TATTTTCTTTTTATTA
1 TATTTTC-TTTTATTA
*
6007886 TTTTTTCTTT
1 TATTTTCTTT
6007896 CTTTAGAATC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 7 0.30
15 8 0.35
16 8 0.35
ACGTcount: A:0.15, C:0.07, G:0.00, T:0.78
Consensus pattern (15 bp):
TATTTTCTTTTATTA
Found at i:6007883 original size:15 final size:16
Alignment explanation
Indices: 6007856--6007895 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
6007846 CAAAAAGCAT
6007856 TATTTTC-TTTTA-TA
1 TATTTTCTTTTTATTA
6007870 TATTTTCTTTTTATTA
1 TATTTTCTTTTTATTA
*
6007886 TTTTTTCTTT
1 TATTTTCTTT
6007896 CTTTAGAATC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 7 0.30
15 5 0.22
16 11 0.48
ACGTcount: A:0.15, C:0.07, G:0.00, T:0.78
Consensus pattern (16 bp):
TATTTTCTTTTTATTA
Found at i:6019419 original size:45 final size:45
Alignment explanation
Indices: 6019352--6019444 Score: 159
Period size: 45 Copynumber: 2.1 Consensus size: 45
6019342 TTAAATAAAC
*
6019352 TTAAAATGTTGACTGACAGAGATACTAACTTGGGAAAAAAGTAGT
1 TTAAAATGTTGACTAACAGAGATACTAACTTGGGAAAAAAGTAGT
**
6019397 TTAAAATGTTGACTAATGGAGATACTAACTTGGGAAAAAAGTAGT
1 TTAAAATGTTGACTAACAGAGATACTAACTTGGGAAAAAAGTAGT
6019442 TTA
1 TTA
6019445 GATACCACTT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.42, C:0.08, G:0.22, T:0.29
Consensus pattern (45 bp):
TTAAAATGTTGACTAACAGAGATACTAACTTGGGAAAAAAGTAGT
Found at i:6026592 original size:18 final size:18
Alignment explanation
Indices: 6026553--6026668 Score: 173
Period size: 18 Copynumber: 6.5 Consensus size: 18
6026543 AATGATATGT
6026553 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
* *
6026570 AATCTTAAATATGATTGC
1 AATCTTAGATATGATTAC
6026588 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
*
6026605 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTAC
*
6026623 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTAC
6026641 AATCTTAGATATGATATAC
1 AATCTTAGATATGAT-TAC
6026660 AATCTTAGA
1 AATCTTAGA
6026669 AGATATGATT
Statistics
Matches: 90, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
17 29 0.32
18 50 0.56
19 11 0.12
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (18 bp):
AATCTTAGATATGATTAC
Found at i:6026593 original size:35 final size:36
Alignment explanation
Indices: 6026544--6026668 Score: 191
Period size: 35 Copynumber: 3.5 Consensus size: 36
6026534 ATAATCTTCA
* *
6026544 ATGATATGTAATCTTAGATATGATACAATCTTAAAT
1 ATGATATGCAATCTTAGATATGATACAATCTTAGAT
6026580 ATGAT-TGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATACAATCTTAGAT
*
6026615 ATGAT-TGCAATCTTAGATATGATTGCAATCTTAGAT
1 ATGATATGCAATCTTAGATATGA-TACAATCTTAGAT
*
6026651 ATGATATACAATCTTAGA
1 ATGATATGCAATCTTAGA
6026669 AGATATGATT
Statistics
Matches: 83, Mismatches: 4, Indels: 3
0.92 0.04 0.03
Matches are distributed among these distances:
35 50 0.60
36 22 0.27
37 11 0.13
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38
Consensus pattern (36 bp):
ATGATATGCAATCTTAGATATGATACAATCTTAGAT
Found at i:6026643 original size:53 final size:53
Alignment explanation
Indices: 6026553--6026668 Score: 189
Period size: 53 Copynumber: 2.2 Consensus size: 53
6026543 AATGATATGT
6026553 AATCTTAGATATGATACAATCTTAAATATGATTGCAATCTTAGATATG-ATAC
1 AATCTTAGATATGATACAATCTTAAATATGATTGCAATCTTAGATATGAATAC
* *
6026605 AATCTTAGATATGATTGCAATCTTAGATATGATTGCAATCTTAGATATGATATAC
1 AATCTTAGATATGA-TACAATCTTAAATATGATTGCAATCTTAGATATGA-ATAC
6026660 AATCTTAGA
1 AATCTTAGA
6026669 AGATATGATT
Statistics
Matches: 59, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
52 14 0.24
53 32 0.54
55 13 0.22
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (53 bp):
AATCTTAGATATGATACAATCTTAAATATGATTGCAATCTTAGATATGAATAC
Found at i:6027175 original size:17 final size:18
Alignment explanation
Indices: 6027155--6027208 Score: 67
Period size: 17 Copynumber: 3.1 Consensus size: 18
6027145 ATATATTTTA
6027155 TATTTTTATATAAT-TAT
1 TATTTTTATATAATATAT
*
6027172 TATTCTTATA-AATATAT
1 TATTTTTATATAATATAT
*
6027189 TTTTTATTATATAATATAT
1 TATTT-TTATATAATATAT
6027208 T
1 T
6027209 TTAAATTTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
16 3 0.10
17 15 0.48
18 5 0.16
19 8 0.26
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (18 bp):
TATTTTTATATAATATAT
Found at i:6032992 original size:16 final size:15
Alignment explanation
Indices: 6032967--6033007 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 15
6032957 CTTCTATTTC
6032967 AAAAAAAAAGAGAAA
1 AAAAAAAAAGAGAAA
6032982 AAAAAATAAAGAGAAA
1 AAAAAA-AAAGAGAAA
6032998 AAAGAAAAAA
1 AAA-AAAAAA
6033008 AATGGAGAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.25
16 15 0.62
17 3 0.12
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.02
Consensus pattern (15 bp):
AAAAAAAAAGAGAAA
Found at i:6034014 original size:44 final size:44
Alignment explanation
Indices: 6033873--6034052 Score: 193
Period size: 44 Copynumber: 4.1 Consensus size: 44
6033863 ATGTAGATCA
* * *
6033873 AGATTTGGCATCCCTATGTTTATAGGGAACAGATCAAAGATAGT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* * * * * * * **
6033917 AGATCTGACATTCCTGTGCTTACAGCGAAGCAGATTGAAGATTTC
1 AGATTTGGCATCCCTGTGTTTATAGGGAA-CAGATCGAAGATAGC
** *
6033962 A-ACATGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
6034005 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
6034049 AGAT
1 AGAT
6034053 CTAACCTTCA
Statistics
Matches: 108, Mismatches: 24, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
42 1 0.01
43 12 0.11
44 83 0.77
45 12 0.11
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (44 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
Found at i:6034259 original size:119 final size:119
Alignment explanation
Indices: 6034044--6034637 Score: 981
Period size: 119 Copynumber: 5.0 Consensus size: 119
6034034 CAGATCGAAG
* *
6034044 ATAGCAGATCTAACCTTCAAATGTTTATACTGAAGTAGATCCAAGATGATTTGGCATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* *
6034109 TTACAAGGAACAAATCGAGGACATAGTAGATTTGACTCTCAGACGTTCTCAAAG
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
* *
6034163 GTAGCAGATCTAACCTTCAGATGTTTATACTAAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
*
6034228 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACATTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
* * *
6034282 ATAGCAGATCTAGCCTTCAGATGTTTATACTGAAGCAGATACAAGATGATTTGGTATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
*
6034347 TTACAAGGAACAAATCGAGGACATAGTAGATTTGACTCTCAGACGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
* * *
6034401 ATAACAGATCTAACCTTCAGATGTTTATACTGAAACAGATCCAAGATGATTTGGTATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* *
6034466 TTACAAGAAAAAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
* * *
6034520 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGC
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* * * *
6034585 TTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAA
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAA
6034638 CAGACTCAAG
Statistics
Matches: 442, Mismatches: 33, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
119 442 1.00
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.30
Consensus pattern (119 bp):
ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
Found at i:6034666 original size:83 final size:83
Alignment explanation
Indices: 6034561--6034829 Score: 475
Period size: 83 Copynumber: 3.2 Consensus size: 83
6034551 GAAGCAGATC
6034561 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
6034626 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* *
6034644 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGGCTCTGA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
6034709 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* * *
6034727 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAGTCGAGGACCTTGCAGATATGATTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
6034792 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* *
6034810 CAAGATGATTTGACATCCTT
1 CAAGATGGTTTGGCATCCTT
6034830 ACAAATCGAA
Statistics
Matches: 177, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
83 177 1.00
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (83 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
AATGTTCTCAAACAGACT
Found at i:6035241 original size:17 final size:17
Alignment explanation
Indices: 6035221--6035318 Score: 115
Period size: 17 Copynumber: 5.5 Consensus size: 17
6035211 AATAATATGT
*
6035221 AATCTTAAATATGATAC
1 AATCTTAGATATGATAC
* *
6035238 AATCTTAAATATGATTGC
1 AATCTTAGATATGA-TAC
6035256 AATCTTAGATATGATAC
1 AATCTTAGATATGATAC
*
6035273 AATCTTAGATATGATTGC
1 AATCTTAGATATGA-TAC
*
6035291 AATATTAGATATGATATAC
1 AATCTTAGATATG--ATAC
6035310 AATCTTAGA
1 AATCTTAGA
6035319 AGATATGATT
Statistics
Matches: 70, Mismatches: 7, Indels: 6
0.84 0.08 0.07
Matches are distributed among these distances:
17 30 0.43
18 29 0.41
19 10 0.14
20 1 0.01
ACGTcount: A:0.42, C:0.10, G:0.11, T:0.37
Consensus pattern (17 bp):
AATCTTAGATATGATAC
Found at i:6035260 original size:18 final size:18
Alignment explanation
Indices: 6035221--6035318 Score: 128
Period size: 18 Copynumber: 5.5 Consensus size: 18
6035211 AATAATATGT
*
6035221 AATCTTAAATATGA-TAC
1 AATCTTAGATATGATTAC
* *
6035238 AATCTTAAATATGATTGC
1 AATCTTAGATATGATTAC
6035256 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
*
6035273 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTAC
*
6035291 AATATTAGATATGATATAC
1 AATCTTAGATATGAT-TAC
6035310 AATCTTAGA
1 AATCTTAGA
6035319 AGATATGATT
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
17 30 0.42
18 31 0.44
19 10 0.14
ACGTcount: A:0.42, C:0.10, G:0.11, T:0.37
Consensus pattern (18 bp):
AATCTTAGATATGATTAC
Found at i:6035261 original size:35 final size:35
Alignment explanation
Indices: 6035221--6035316 Score: 147
Period size: 35 Copynumber: 2.7 Consensus size: 35
6035211 AATAATATGT
*
6035221 AATCTTAAATATGATACAATCTTAAATATGATTGC
1 AATCTTAGATATGATACAATCTTAAATATGATTGC
*
6035256 AATCTTAGATATGATACAATCTTAGATATGATTGC
1 AATCTTAGATATGATACAATCTTAAATATGATTGC
*
6035291 AATATTAGATATGATATACAATCTTA
1 AATCTTAGATATG--ATACAATCTTA
6035317 GAAGATATGA
Statistics
Matches: 56, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
35 45 0.80
37 11 0.20
ACGTcount: A:0.42, C:0.10, G:0.10, T:0.38
Consensus pattern (35 bp):
AATCTTAGATATGATACAATCTTAAATATGATTGC
Found at i:6035815 original size:17 final size:16
Alignment explanation
Indices: 6035802--6035859 Score: 66
Period size: 17 Copynumber: 3.6 Consensus size: 16
6035792 CCAATATATT
6035802 TTATATTTTTATATAA
1 TTATATTTTTATATAA
*
6035818 TTATTATTCTTATA-AA
1 TTA-TATTTTTATATAA
6035834 -TATATTTTTATTATATA
1 TTATATTTTTA-TATA-A
6035851 TTATATTTT
1 TTATATTTT
6035860 AAATTTATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
14 7 0.20
15 4 0.11
16 6 0.17
17 10 0.29
18 8 0.23
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (16 bp):
TTATATTTTTATATAA
Found at i:6035860 original size:17 final size:17
Alignment explanation
Indices: 6035795--6035860 Score: 50
Period size: 17 Copynumber: 3.9 Consensus size: 17
6035785 TTCTAAACCA
*
6035795 ATATATTTTATATTT-TT
1 ATATATTATAT-TTTATT
6035812 ATATAATTATTATTCTTA-T
1 ATAT-ATTA-TATT-TTATT
*
6035831 AAATA-TAT-TTTTATT
1 ATATATTATATTTTATT
6035846 ATATATTATATTTTA
1 ATATATTATATTTTA
6035861 AATTTATTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 14
0.70 0.05 0.25
Matches are distributed among these distances:
14 3 0.08
15 7 0.18
16 4 0.10
17 11 0.28
18 5 0.13
19 9 0.23
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (17 bp):
ATATATTATATTTTATT
Found at i:6035884 original size:26 final size:25
Alignment explanation
Indices: 6035837--6035885 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
6035827 TTATAAATAT
* * *
6035837 ATTTTTATTATATATTATATTTTAA
1 ATTTTTATTAAATATCACATTTTAA
6035862 ATTTATTATTAAATATCACATTTT
1 ATTT-TTATTAAATATCACATTTT
6035886 TTATATGCTC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 4 0.20
26 16 0.80
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (25 bp):
ATTTTTATTAAATATCACATTTTAA
Found at i:6040250 original size:38 final size:38
Alignment explanation
Indices: 6040208--6040283 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
6040198 AACTCTAGGA
*
6040208 TAATTTTCAGACATCGTAACTCGGAAAACCCAGGCAGC
1 TAATTTTCAGACATCGTAACTCGGAAAACCCAGACAGC
6040246 TAATTTTCAGACATCGTAACTCGGAAAACCCAGACAGC
1 TAATTTTCAGACATCGTAACTCGGAAAACCCAGACAGC
6040284 ATGTGTTGAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.36, C:0.26, G:0.17, T:0.21
Consensus pattern (38 bp):
TAATTTTCAGACATCGTAACTCGGAAAACCCAGACAGC
Found at i:6042028 original size:21 final size:21
Alignment explanation
Indices: 6041996--6042036 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
6041986 AGGCTCGAGG
6041996 GGCCTGTTTTAGGCC-ATACAA
1 GGCCTGTTTTA-GCCTATACAA
6042017 GGCCT-TTCTTAGCCTATACA
1 GGCCTGTT-TTAGCCTATACA
6042037 CCAAATGTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.32
Consensus pattern (21 bp):
GGCCTGTTTTAGCCTATACAA
Found at i:6059894 original size:21 final size:21
Alignment explanation
Indices: 6059862--6059902 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
6059852 AGGCTCGAGG
6059862 GGCCTGTTTTAGGCC-ATACAA
1 GGCCTGTTTTA-GCCTATACAA
6059883 GGCCT-TTCTTAGCCTATACA
1 GGCCTGTT-TTAGCCTATACA
6059903 CCAATTGTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.32
Consensus pattern (21 bp):
GGCCTGTTTTAGCCTATACAA
Found at i:6067304 original size:18 final size:19
Alignment explanation
Indices: 6067268--6067307 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
6067258 ACTTATGAAA
6067268 TTTCAACCATTTAATTTTT
1 TTTCAACCATTTAATTTTT
6067287 TTTCAACCATTT-ATTTTT
1 TTTCAACCATTTAATTTTT
6067305 TTT
1 TTT
6067308 ACATTATGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 9 0.43
19 12 0.57
ACGTcount: A:0.23, C:0.15, G:0.00, T:0.62
Consensus pattern (19 bp):
TTTCAACCATTTAATTTTT
Found at i:6083247 original size:22 final size:21
Alignment explanation
Indices: 6083216--6083283 Score: 100
Period size: 22 Copynumber: 3.1 Consensus size: 21
6083206 TTAATACATG
6083216 TTTGTCTTTTTGATGATTTCTT
1 TTTGT-TTTTTGATGATTTCTT
6083238 TTTGTTTTTTGAATGATTTCTT
1 TTTGTTTTTTG-ATGATTTCTT
*
6083260 TTTGTTTTTTGAGTGAATTCTT
1 TTTGTTTTTTGA-TGATTTCTT
6083282 TT
1 TT
6083284 CGATGATTTC
Statistics
Matches: 43, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
21 7 0.16
22 36 0.84
ACGTcount: A:0.12, C:0.06, G:0.15, T:0.68
Consensus pattern (21 bp):
TTTGTTTTTTGATGATTTCTT
Found at i:6087803 original size:7 final size:7
Alignment explanation
Indices: 6087791--6087819 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
6087781 CAAACGGAAC
6087791 TCCTCCA
1 TCCTCCA
6087798 TCCTCCA
1 TCCTCCA
6087805 TCCTCCA
1 TCCTCCA
6087812 TCCTCCA
1 TCCTCCA
6087819 T
1 T
6087820 TCCTAATTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.14, C:0.55, G:0.00, T:0.31
Consensus pattern (7 bp):
TCCTCCA
Found at i:6090462 original size:15 final size:15
Alignment explanation
Indices: 6090442--6090474 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
6090432 CTGAGTTACA
*
6090442 GTGTCGTCTCCCATG
1 GTGTCGTCTCCAATG
6090457 GTGTCGTCTCCAATG
1 GTGTCGTCTCCAATG
6090472 GTG
1 GTG
6090475 CCATCATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.09, C:0.27, G:0.30, T:0.33
Consensus pattern (15 bp):
GTGTCGTCTCCAATG
Found at i:6091529 original size:13 final size:13
Alignment explanation
Indices: 6091511--6091535 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6091501 ATGCACATTC
6091511 ATGTTTTAATTTA
1 ATGTTTTAATTTA
6091524 ATGTTTTAATTT
1 ATGTTTTAATTT
6091536 CCCACTGTCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (13 bp):
ATGTTTTAATTTA
Found at i:6108777 original size:59 final size:60
Alignment explanation
Indices: 6108647--6108787 Score: 144
Period size: 60 Copynumber: 2.4 Consensus size: 60
6108637 CCCAACTATG
* * * *
6108647 TTGATATGGGCAAGGCCCAATATATCTCGAATTGTAATAGAGCTACGACCCAGATTGATA
1 TTGATATGGGCTAGGCCCAGTATATCTCGAATTGTAATAGAGCTACGACCCAGATTAAAA
* * * * *
6108707 CTGATATGGGCTAGGCCCAGTATA-CTCTG-ATCTGTAA-GGGGCTATGGCCCAGATTAAAA
1 TTGATATGGGCTAGGCCCAGTATATCTC-GAAT-TGTAATAGAGCTACGACCCAGATTAAAA
*
6108766 TTGATATGGGCTAAGGCTCAGT
1 TTGATATGGGCT-AGGCCCAGT
6108788 TAACCAGATT
Statistics
Matches: 67, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
59 32 0.48
60 35 0.52
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (60 bp):
TTGATATGGGCTAGGCCCAGTATATCTCGAATTGTAATAGAGCTACGACCCAGATTAAAA
Found at i:6108795 original size:36 final size:36
Alignment explanation
Indices: 6108755--6108827 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
6108745 GGGCTATGGC
6108755 CCAGATTAAAATTGATATGGGCTAAGGCTCAGTTAA
1 CCAGATTAAAATTGATATGGGCTAAGGCTCAGTTAA
6108791 CCAGATTAAAATTGATATGGGCTAAGGCTCAGTTAA
1 CCAGATTAAAATTGATATGGGCTAAGGCTCAGTTAA
6108827 C
1 C
6108828 TCTGATTTCT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.27
Consensus pattern (36 bp):
CCAGATTAAAATTGATATGGGCTAAGGCTCAGTTAA
Found at i:6109030 original size:18 final size:18
Alignment explanation
Indices: 6109007--6109044 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
6108997 TTACTTGGAC
6109007 TCTAATTCT-GTTTTAAAT
1 TCTAATT-TGGTTTTAAAT
6109025 TCTAATTTGGGTTTTAAAT
1 TCTAATTT-GGTTTTAAAT
6109044 T
1 T
6109045 TTGTAATAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 1 0.06
18 7 0.39
19 10 0.56
ACGTcount: A:0.26, C:0.08, G:0.11, T:0.55
Consensus pattern (18 bp):
TCTAATTTGGTTTTAAAT
Found at i:6122654 original size:27 final size:27
Alignment explanation
Indices: 6122616--6122675 Score: 111
Period size: 27 Copynumber: 2.2 Consensus size: 27
6122606 ACAAGTGATG
6122616 AATTCGCTGTCATATCGCTAAAAACTA
1 AATTCGCTGTCATATCGCTAAAAACTA
6122643 AATTCGCTGTCATATCGCTAAAAACTA
1 AATTCGCTGTCATATCGCTAAAAACTA
6122670 ACATTC
1 A-ATTC
6122676 CAAAATTGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 28 0.88
28 4 0.12
ACGTcount: A:0.37, C:0.23, G:0.10, T:0.30
Consensus pattern (27 bp):
AATTCGCTGTCATATCGCTAAAAACTA
Found at i:6130015 original size:18 final size:19
Alignment explanation
Indices: 6129982--6130019 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
6129972 AGACTCCAGG
*
6129982 TCTGATTCTTTTCAATCAT
1 TCTGATTCTCTTCAATCAT
6130001 TCTGATT-TCTTCAATCAT
1 TCTGATTCTCTTCAATCAT
6130019 T
1 T
6130020 GCTTGCTTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.21, C:0.21, G:0.05, T:0.53
Consensus pattern (19 bp):
TCTGATTCTCTTCAATCAT
Found at i:6137177 original size:31 final size:29
Alignment explanation
Indices: 6137113--6137170 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
6137103 TACTATTAAC
* * *
6137113 GACACACAGCCGTGTGGCAGGCTGTGTAT
1 GACACACAGCCATGTGACAAGCTGTGTAT
6137142 GACACACAGCCATGTGACAAGCTGTGTAT
1 GACACACAGCCATGTGACAAGCTGTGTAT
6137171 TAGACACGGT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (29 bp):
GACACACAGCCATGTGACAAGCTGTGTAT
Found at i:6137212 original size:18 final size:18
Alignment explanation
Indices: 6137179--6137213 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
6137169 ATTAGACACG
**
6137179 GTCTGGGCTATTTGGGTT
1 GTCTGGGCTACATGGGTT
6137197 GTCTGGGCTACATGGGT
1 GTCTGGGCTACATGGGT
6137214 GTGTAGTCTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.09, C:0.14, G:0.40, T:0.37
Consensus pattern (18 bp):
GTCTGGGCTACATGGGTT
Found at i:6140595 original size:19 final size:19
Alignment explanation
Indices: 6140573--6140609 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
6140563 CACATGGTTG
*
6140573 TGTGCCCCGGCCATGTGGA
1 TGTGCCCAGGCCATGTGGA
6140592 TGTGCCCAGGCCATGTGG
1 TGTGCCCAGGCCATGTGG
6140610 GGGTCTACAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.11, C:0.30, G:0.38, T:0.22
Consensus pattern (19 bp):
TGTGCCCAGGCCATGTGGA
Found at i:6142321 original size:17 final size:17
Alignment explanation
Indices: 6142299--6142332 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
6142289 TAATTGATCA
6142299 ATAACATGTCCGTGTGG
1 ATAACATGTCCGTGTGG
6142316 ATAACATGTCCGTGTGG
1 ATAACATGTCCGTGTGG
6142333 CACCAAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (17 bp):
ATAACATGTCCGTGTGG
Found at i:6143879 original size:17 final size:17
Alignment explanation
Indices: 6143857--6143890 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
6143847 TAATTGATCA
6143857 ATAACATGTCCGTGTGG
1 ATAACATGTCCGTGTGG
6143874 ATAACATGTCCGTGTGG
1 ATAACATGTCCGTGTGG
6143891 CACCAAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (17 bp):
ATAACATGTCCGTGTGG
Found at i:6145437 original size:17 final size:17
Alignment explanation
Indices: 6145415--6145448 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
6145405 TAATTGATCA
6145415 ATAACATGTCCGTGTGG
1 ATAACATGTCCGTGTGG
6145432 ATAACATGTCCGTGTGG
1 ATAACATGTCCGTGTGG
6145449 CACCAAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (17 bp):
ATAACATGTCCGTGTGG
Found at i:6146995 original size:17 final size:17
Alignment explanation
Indices: 6146973--6147006 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
6146963 TAATTGATCA
6146973 ATAACATGTCCGTGTGG
1 ATAACATGTCCGTGTGG
6146990 ATAACATGTCCGTGTGG
1 ATAACATGTCCGTGTGG
6147007 CACCAAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (17 bp):
ATAACATGTCCGTGTGG
Found at i:6162182 original size:13 final size:13
Alignment explanation
Indices: 6162166--6162198 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
6162156 CATTGCTTTT
6162166 GAAAAGTGCTGTG
1 GAAAAGTGCTGTG
6162179 GAAAAGTGCTGTG
1 GAAAAGTGCTGTG
6162192 GAAAAGT
1 GAAAAGT
6162199 ACTTTTGAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.36, C:0.06, G:0.36, T:0.21
Consensus pattern (13 bp):
GAAAAGTGCTGTG
Found at i:6162211 original size:13 final size:13
Alignment explanation
Indices: 6162195--6162224 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
6162185 TGCTGTGGAA
*
6162195 AAGTACTTTTGAG
1 AAGTACTTTTAAG
6162208 AAGTACTTTTAAG
1 AAGTACTTTTAAG
6162221 AAGT
1 AAGT
6162225 GTTTTAGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.07, G:0.20, T:0.37
Consensus pattern (13 bp):
AAGTACTTTTAAG
Found at i:6165694 original size:13 final size:14
Alignment explanation
Indices: 6165670--6165702 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
6165660 TTTAATTTTC
6165670 AAAATTTCAAAAAA
1 AAAATTTCAAAAAA
*
6165684 AAAATTT-AAAATA
1 AAAATTTCAAAAAA
6165697 AAAATT
1 AAAATT
6165703 GCATTTTGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 11 0.61
14 7 0.39
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (14 bp):
AAAATTTCAAAAAA
Found at i:6165738 original size:30 final size:30
Alignment explanation
Indices: 6165698--6165799 Score: 134
Period size: 30 Copynumber: 3.4 Consensus size: 30
6165688 TTTAAAATAA
* *
6165698 AAATTGCATTTTGACCCCTAAACTTTTC-CT
1 AAATTTCATTTTGACCCCTAAAC-TTTCATT
* *
6165728 AAATTTCATTTTGACCCTTAAACTTTCTTT
1 AAATTTCATTTTGACCCCTAAACTTTCATT
* *
6165758 AAATTTCACTTAGACCCCTAAACTTTCATT
1 AAATTTCATTTTGACCCCTAAACTTTCATT
6165788 AAATTTCATTTT
1 AAATTTCATTTT
6165800 AATCCTAAAT
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
29 4 0.06
30 58 0.94
ACGTcount: A:0.29, C:0.23, G:0.04, T:0.44
Consensus pattern (30 bp):
AAATTTCATTTTGACCCCTAAACTTTCATT
Found at i:6166393 original size:14 final size:13
Alignment explanation
Indices: 6166371--6166423 Score: 63
Period size: 14 Copynumber: 3.8 Consensus size: 13
6166361 AGACAAGAAG
6166371 AAGAGAAGAAGAAAA
1 AAGA-AAGAA-AAAA
6166386 AAGAAAGAAAAAA
1 AAGAAAGAAAAAA
6166399 AGAGAAAGAAAAAGA
1 A-AGAAAGAAAAA-A
6166414 AAGAAA-AAAA
1 AAGAAAGAAAA
6166424 GTAATTAAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
13 9 0.25
14 21 0.58
15 6 0.17
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (13 bp):
AAGAAAGAAAAAA
Found at i:6166396 original size:10 final size:10
Alignment explanation
Indices: 6166374--6166421 Score: 53
Period size: 10 Copynumber: 4.7 Consensus size: 10
6166364 CAAGAAGAAG
*
6166374 AGAAGAAGAA
1 AGAAAAAGAA
*
6166384 AAAAGAAAGAA
1 AGAA-AAAGAA
6166395 A-AAAAGAGAA
1 AGAAAA-AGAA
6166405 AGAAAAAGAA
1 AGAAAAAGAA
6166415 AGAAAAA
1 AGAAAAA
6166422 AAGTAATTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
9 2 0.06
10 21 0.64
11 10 0.30
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (10 bp):
AGAAAAAGAA
Found at i:6166433 original size:11 final size:11
Alignment explanation
Indices: 6166419--6166445 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
6166409 AAAGAAAGAA
6166419 AAAAAGTAATT
1 AAAAAGTAATT
6166430 AAAAAGTAATT
1 AAAAAGTAATT
6166441 AAAAA
1 AAAAA
6166446 AATAAAAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.22
Consensus pattern (11 bp):
AAAAAGTAATT
Found at i:6166434 original size:24 final size:23
Alignment explanation
Indices: 6166377--6166424 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 23
6166367 GAAGAAGAGA
6166377 AGAAGAAAAAAGAAAGAAAAAAAG
1 AGAA-AAAAAAGAAAGAAAAAAAG
6166401 AGAAAGAAAAAGAAAGAAAAAAAG
1 AGAAA-AAAAAGAAAGAAAAAAAG
6166425 TAATTAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 1 0.04
24 22 0.96
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (23 bp):
AGAAAAAAAAGAAAGAAAAAAAG
Found at i:6167072 original size:17 final size:17
Alignment explanation
Indices: 6167052--6167357 Score: 189
Period size: 18 Copynumber: 17.3 Consensus size: 17
6167042 TCGTGAATAA
*
6167052 AAAAAATTCGTGTTTTC
1 AAAAATTTCGTGTTTTC
6167069 AAAAATTTTCGTGTTTTC
1 AAAAA-TTTCGTGTTTTC
*
6167087 AAAAATCTTTGTGTTTTC
1 AAAAAT-TTCGTGTTTTC
* *
6167105 AAAAATTCTGGCG-TTTC
1 AAAAATT-TCGTGTTTTC
**
6167122 AAAAATTTTCGTGTTTAAAA
1 AAAAA-TTTCGTGTTT--TC
6167142 AAAAATTTACGTGTTTTC
1 AAAAATTT-CGTGTTTTC
*
6167160 ACAAATTTTCGTG-TTTC
1 A-AAAATTTCGTGTTTTC
*
6167177 ACAAATTCTCGTGTTTTC
1 AAAAATT-TCGTGTTTTC
* *
6167195 AAAAACTCCAGTG-TTTC
1 AAAAATTTC-GTGTTTTC
* *
6167212 TAAAATTTCCCTGTTTT-
1 AAAAATTT-CGTGTTTTC
*
6167229 AAAAATTCCCGTG-TTTC
1 AAAAATT-TCGTGTTTTC
* *
6167246 AGAAAAAATGTCGTGTTTTA
1 ---AAAAATTTCGTGTTTTC
*
6167266 AGAAAATTTCGTTTTTTC
1 A-AAAATTTCGTGTTTTC
6167284 TAAAAATTTTCGTG-TTTC
1 -AAAAA-TTTCGTGTTTTC
*
6167302 TAAAATTTTCGTG-TTT-
1 -AAAAATTTCGTGTTTTC
*
6167318 ACAAATTCTCGTGTTTTC
1 AAAAATT-TCGTGTTTTC
*
6167336 AAAAATTCTCGTATTTT-
1 AAAAATT-TCGTGTTTTC
6167353 AAAAA
1 AAAAA
6167358 AAACTTTCGT
Statistics
Matches: 228, Mismatches: 35, Indels: 52
0.72 0.11 0.17
Matches are distributed among these distances:
15 5 0.02
16 12 0.05
17 69 0.30
18 101 0.44
19 20 0.09
20 21 0.09
ACGTcount: A:0.31, C:0.14, G:0.11, T:0.43
Consensus pattern (17 bp):
AAAAATTTCGTGTTTTC
Found at i:6167157 original size:55 final size:53
Alignment explanation
Indices: 6167065--6167192 Score: 148
Period size: 55 Copynumber: 2.4 Consensus size: 53
6167055 AAATTCGTGT
** ** *
6167065 TTTCAAAAATTTTCGTGTTTTCAAAAATCTTTGTGTTTTCAAAAATTCTGGCG
1 TTTCAAAAATTTTCGTGTTTAAAAAAAAATTTGTGTTTTCAAAAATTCTCGCG
* * *
6167118 TTTCAAAAATTTTCGTGTTTAAAAAAAAATTTACGTGTTTTCACAAATTTTCGTG
1 TTTCAAAAATTTTCGTGTTTAAAAAAAAATTT--GTGTTTTCAAAAATTCTCGCG
* *
6167173 TTTCACAAATTCTCGTGTTT
1 TTTCAAAAATTTTCGTGTTT
6167193 TCAAAAACTC
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
53 28 0.44
55 35 0.56
ACGTcount: A:0.30, C:0.13, G:0.12, T:0.45
Consensus pattern (53 bp):
TTTCAAAAATTTTCGTGTTTAAAAAAAAATTTGTGTTTTCAAAAATTCTCGCG
Found at i:6167209 original size:73 final size:73
Alignment explanation
Indices: 6167069--6167210 Score: 173
Period size: 73 Copynumber: 1.9 Consensus size: 73
6167059 TCGTGTTTTC
* * * *
6167069 AAAAATTTTCGTGTTTTCAAAAATCTTTGTGTTTTCAAAAATTCTGGCGTTTCAAAAATTTTCGT
1 AAAAATTTACGTGTTTTCAAAAATCTTTGTGTTTTCAAAAATTCTCGCGTTTCAAAAATCTCCGT
6167134 GTTTAAAA
66 GTTTAAAA
* * *
6167142 AAAAATTTACGTGTTTTCACAAAT-TTTCGTG-TTTCACAAATTCTCGTGTTTTCAAAAA-CTCC
1 AAAAATTTACGTGTTTTCAAAAATCTTT-GTGTTTTCAAAAATTCTCGCG-TTTCAAAAATCTCC
6167204 AGTGTTT
64 -GTGTTT
6167211 CTAAAATTTC
Statistics
Matches: 59, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
72 19 0.32
73 40 0.68
ACGTcount: A:0.31, C:0.14, G:0.12, T:0.43
Consensus pattern (73 bp):
AAAAATTTACGTGTTTTCAAAAATCTTTGTGTTTTCAAAAATTCTCGCGTTTCAAAAATCTCCGT
GTTTAAAA
Found at i:6167356 original size:16 final size:16
Alignment explanation
Indices: 6167151--6167356 Score: 78
Period size: 17 Copynumber: 11.8 Consensus size: 16
6167141 AAAAAATTTA
*
6167151 CGTGTTTTCACAAATTTT
1 CGTGTTTT-A-AAATTCT
*
6167169 CGTGTTTCACAAATTCT
1 CGTGTTTTA-AAATTCT
*
6167186 CGTGTTTTCAAAA-ACT
1 CGTGTTTT-AAAATTCT
6167202 CCAGTGTTTCTAAAATT-T
1 -C-GTGTTT-TAAAATTCT
* *
6167220 CCCTGTTTTAAAAATTCC
1 -CGTGTTTT-AAAATTCT
* * *
6167238 CGTGTTTCAGAAAAAATGT
1 CGTGTTT---TAAAATTCT
6167257 CGTGTTTTAAGAAAATT-T
1 CGTGTTTT---AAAATTCT
* *
6167275 CGTTTTTTCTAAAAATTTT
1 CG-TGTTT-T-AAAATTCT
*
6167294 CGTGTTTCTAAAATTTT
1 CGTGTTT-TAAAATTCT
6167311 CGTG-TTTACAAATTCT
1 CGTGTTTTA-AAATTCT
6167327 CGTGTTTTCAAAAATTCT
1 CGTGTTTT--AAAATTCT
*
6167345 CGTATTTTAAAA
1 CGTGTTTTAAAA
6167357 AAAACTTTCG
Statistics
Matches: 149, Mismatches: 19, Indels: 42
0.71 0.09 0.20
Matches are distributed among these distances:
15 2 0.01
16 19 0.13
17 51 0.34
18 50 0.34
19 26 0.17
20 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.12, T:0.44
Consensus pattern (16 bp):
CGTGTTTTAAAATTCT
Found at i:6171059 original size:14 final size:14
Alignment explanation
Indices: 6171040--6171072 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
6171030 GACAGTCATG
6171040 AAAAGAAAAAGAAA
1 AAAAGAAAAAGAAA
6171054 AAAAGAAAAAGAAA
1 AAAAGAAAAAGAAA
6171068 AAAAG
1 AAAAG
6171073 GAGGACAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (14 bp):
AAAAGAAAAAGAAA
Found at i:6171697 original size:12 final size:12
Alignment explanation
Indices: 6171672--6171709 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
6171662 TCATTCATTC
6171672 AAAAGCAAAA-AA
1 AAAAG-AAAAGAA
*
6171684 AAAAGAAGAGAA
1 AAAAGAAAAGAA
6171696 AAAAGAAAAGAA
1 AAAAGAAAAGAA
6171708 AA
1 AA
6171710 TGGAGAGGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
11 3 0.13
12 20 0.87
ACGTcount: A:0.82, C:0.03, G:0.16, T:0.00
Consensus pattern (12 bp):
AAAAGAAAAGAA
Found at i:6173420 original size:70 final size:70
Alignment explanation
Indices: 6173296--6173426 Score: 190
Period size: 70 Copynumber: 1.9 Consensus size: 70
6173286 TTTCTGTTTC
* ***
6173296 AAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATT
1 AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCCAAGGTATTTTTAAATT
6173361 TTAAA
66 TTAAA
* ** *
6173366 AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCAAGGTATTTTTA
1 AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCCAAGGTATTTTTA
6173427 GTTTATGTTT
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
70 53 1.00
ACGTcount: A:0.36, C:0.15, G:0.21, T:0.28
Consensus pattern (70 bp):
AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCCAAGGTATTTTTAAATT
TTAAA
Found at i:6173877 original size:123 final size:125
Alignment explanation
Indices: 6173630--6173933 Score: 357
Period size: 123 Copynumber: 2.4 Consensus size: 125
6173620 TCAATTCCTG
* *
6173630 TTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGGGTTGAA-CCTTTTAATTTCT
1 TTCAATTTATG-TTTT-AAAATTCAACTCATATTGCGAGAGGTGAGTT-AAGCCTTTTAATTTCT
* ** * *
6173694 ACTTTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATT
63 A-TTTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCCGAGGTAAT
* * *
6173758 TTTAGTTTATGTTTT-AAATT-GACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTT-T-TG
1 TTCAATTTATGTTTTAAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTCTAT-
* **
6173819 TTTTTCAAAACTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAAT
65 TTTTTCAAAA-TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCCGAGGTAAT
* ** *
6173881 TTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCT
1 TTCAATTTATGTTTT-AAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCCT
6173934 CAAGACACAT
Statistics
Matches: 150, Mismatches: 20, Indels: 14
0.82 0.11 0.08
Matches are distributed among these distances:
121 1 0.01
122 10 0.07
123 58 0.39
124 33 0.22
125 9 0.06
126 26 0.17
127 4 0.03
128 9 0.06
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.37
Consensus pattern (125 bp):
TTCAATTTATGTTTTAAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTCTATT
TTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCCGAGGTAAT
Found at i:6173929 original size:72 final size:72
Alignment explanation
Indices: 6173811--6174002 Score: 246
Period size: 72 Copynumber: 2.7 Consensus size: 72
6173801 TAAGCCTTTT
* * * *
6173811 AATTTTTGTTTTTCAAAACTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTATG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAG
6173876 GTAATTTC
65 GTAATTTC
*
6173884 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGG
1 AATTTATGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGG
* *
6173949 TATTTTT
66 TAATTTC
* * ** *
6173956 AGTTTATGTTTT--AAATT-GACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AATTTATGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCT
6174003 TTTAATTTTT
Statistics
Matches: 107, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
69 26 0.24
70 5 0.05
72 69 0.64
73 7 0.07
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.36
Consensus pattern (72 bp):
AATTTATGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGG
TAATTTC
Found at i:6174205 original size:72 final size:72
Alignment explanation
Indices: 6174006--6174559 Score: 918
Period size: 72 Copynumber: 7.7 Consensus size: 72
6173996 TAAGCCTTTT
* *
6174006 AATTTTTGTTTTTCAAAACTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
*
6174071 GTATTTTC
65 GTAATTTC
6174079 AATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
6174144 GTAATTTC
65 GTAATTTC
6174152 AATCTT-TGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AAT-TTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
6174216 GTAATTTC
65 GTAATTTC
6174224 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
6174289 TAATTTC
66 TAATTTC
6174296 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
6174361 TATTTTC
66 TAATTTC
*
6174368 AATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
6174433 GTAATTTC
65 GTAATTTC
*
6174441 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
* *
6174506 TATTTTT
66 TAATTTC
* * * ** *
6174513 AGTTTATGTTTT--AAATT-GACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCT
6174560 TTTAATTTTT
Statistics
Matches: 461, Mismatches: 17, Indels: 10
0.94 0.03 0.02
Matches are distributed among these distances:
69 26 0.06
70 5 0.01
71 2 0.00
72 282 0.61
73 144 0.31
74 2 0.00
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.34
Consensus pattern (72 bp):
AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
TAATTTC
Found at i:6174452 original size:145 final size:144
Alignment explanation
Indices: 6174006--6175489 Score: 2157
Period size: 145 Copynumber: 10.6 Consensus size: 144
6173996 TAAGCCTTTT
* *
6174006 AATTTTTGTTTTTCAAAACTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
6174071 GTATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAC
65 GTATTTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAC
6174136 ACGTTGAGGTAATTTC
129 ACGTTGAGGTAATTTC
6174152 AATCTT-TGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AAT-TTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
*
6174216 GTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
65 GTATTTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
6174281 CGTTGAGGTAATTTC
130 CGTTGAGGTAATTTC
6174296 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
6174361 TATTTTCAATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
66 TATTTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
6174426 CGTTGAGGTAATTTC
130 CGTTGAGGTAATTTC
*
6174441 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
* * * * *
6174506 TATTTTTAGTTTATGTTTT--AAATT-GACTCATATTGCGAG--A-G-G-TGAG--TTAAG-C-C
66 TATTTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
*
6174559 -TT---TTAATTT-
131 GTTGAGGTAATTTC
* ***
6174568 --TTGT-TTTTCAAA--ATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AATT-TCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
6174628 GTATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAC
65 GTATTTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAC
6174693 ACGTTGAGGTAATTTC
129 ACGTTGAGGTAATTTC
6174709 AATCTT-TGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AAT-TTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
* *
6174773 GTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATTAGTTGAGCCTCAAGACA
65 GTATTTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
6174838 CGTTGAGGTAATTTC
130 CGTTGAGGTAATTTC
6174853 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
6174918 TATTTTCAATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
66 TATTTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
6174983 CGTTGAGGTAATTTC
130 CGTTGAGGTAATTTC
*
6174998 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
* * * * *
6175063 TATTTTTAGTTTATGTTTT--AAATT-GACTCATATTGCGAG--A-G-G-TGAG--TTAAG-C-C
66 TATTTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
*
6175116 -TT---TTAATTT-
131 GTTGAGGTAATTTC
* *** *
6175125 --TTGT-TTTTCAAA--A-TCAACTCATATTGCGAGAAATGAGTTGAGCTTCAAGACACGTTGAG
1 AATT-TCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
*
6175184 GTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
65 GTATTTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
*
6175249 CGTTGAGGTATTTTC
130 CGTTGAGGTAATTTC
*
6175264 AATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
*
6175329 GTAATTTCAATCTT-TGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAC
65 GTATTTTCAAT-TTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAC
* *
6175393 ACATTGAGGTATTTTC
129 ACGTTGAGGTAATTTC
* * *
6175409 AATTTCTGCTTTTCAAAACTT-AACTCATATTGCGAGAGATGAGTTGAGCCTCAAGGCACGCTGA
1 AATTTCTG-TTTTCAAAA-TTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGA
6175473 GGTATTTTCAATTTCTG
64 GGTATTTTCAATTTCTG
6175490 CTTTACTAAT
Statistics
Matches: 1217, Mismatches: 64, Indels: 115
0.87 0.05 0.08
Matches are distributed among these distances:
122 60 0.05
123 61 0.05
124 9 0.01
125 26 0.02
126 7 0.01
127 15 0.01
128 13 0.01
129 2 0.00
130 5 0.00
131 5 0.00
132 10 0.01
133 3 0.00
134 13 0.01
135 3 0.00
136 9 0.01
137 4 0.00
138 7 0.01
139 2 0.00
140 7 0.01
141 31 0.03
142 14 0.01
143 10 0.01
144 289 0.24
145 601 0.49
146 9 0.01
147 2 0.00
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (144 bp):
AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
TATTTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
GTTGAGGTAATTTC
Found at i:6174762 original size:72 final size:72
Alignment explanation
Indices: 6174563--6175116 Score: 918
Period size: 72 Copynumber: 7.7 Consensus size: 72
6174553 TAAGCCTTTT
*
6174563 AATTTTTGTTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
*
6174628 GTATTTTC
65 GTAATTTC
6174636 AATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
6174701 GTAATTTC
65 GTAATTTC
6174709 AATCTT-TGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AAT-TTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
6174773 GTAATTTC
65 GTAATTTC
*
6174781 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATTAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
6174846 TAATTTC
66 TAATTTC
6174853 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
6174918 TATTTTC
66 TAATTTC
*
6174925 AATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
6174990 GTAATTTC
65 GTAATTTC
*
6174998 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
* *
6175063 TATTTTT
66 TAATTTC
* * * ** *
6175070 AGTTTATGTTTT--AAATT-GACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCT
6175117 TTTAATTTTT
Statistics
Matches: 460, Mismatches: 18, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
69 26 0.06
70 5 0.01
71 2 0.00
72 280 0.61
73 145 0.32
74 2 0.00
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (72 bp):
AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
TAATTTC
Found at i:6174885 original size:557 final size:556
Alignment explanation
Indices: 6173823--6175492 Score: 3141
Period size: 557 Copynumber: 3.0 Consensus size: 556
6173813 TTTTTGTTTT
* *
6173823 TCAAAACTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATT
1 TCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATT
6173888 TCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTATT
66 TCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTATT
6173953 TTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTT
131 TTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTT
6174018 TCAAAACTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATT
196 TCAAAA-TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATT
6174083 TCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAA
260 TCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAA
6174148 TTTCAATCTTTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTT
325 TTTCAATCTTTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTT
6174213 GAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG
390 GAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG
6174278 ACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAG
455 ACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAG
6174343 CCTCAAGACACGTTGAGGTATTTTCAATTTCTGCTTC
520 CCTCAAGACACGTTGAGGTATTTTCAATTTCTGCTTC
6174380 TCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATT
1 TCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATT
6174445 TCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTATT
66 TCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTATT
6174510 TTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTT
131 TTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTT
6174575 TCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATT
196 TCAAAA-TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATT
6174640 TCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAA
260 TCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAA
6174705 TTTCAATCTTTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTT
325 TTTCAATCTTTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTT
*
6174770 GAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATTAGTTGAGCCTCAAG
390 GAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG
6174835 ACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAG
455 ACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAG
6174900 CCTCAAGACACGTTGAGGTATTTTCAATTTCTGCTTC
520 CCTCAAGACACGTTGAGGTATTTTCAATTTCTGCTTC
6174937 TCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATT
1 TCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATT
6175002 TCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTATT
66 TCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTATT
6175067 TTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTT
131 TTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTT
* *
6175132 TCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCTTCAAGACACGTTGAGGTAATTTCAATTT
196 TCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
*
6175197 CTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATT
261 CTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAAT
*
6175261 TTCAAT-TTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGT
326 TTCAATCTT-TG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGT
6175325 TGAGGTAATTTCAATCTT-TGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
389 TGAGGTAATTTCAAT-TTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
* * *
6175389 AGACACATTGAGGTATTTTCAATTTCTGCTTTTCAAAACTT-AACTCATATTGCGAGAGATGAGT
453 AGACACGTTGAGGTAATTTCAATTTCTG-TTTTCAAAA-TTCAACTCATATTGCGAGAAATGAGT
* *
6175453 TGAGCCTCAAGGCACGCTGAGGTATTTTCAATTTCTGCTT
516 TGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGCTT
6175493 TACTAATTCT
Statistics
Matches: 1094, Mismatches: 14, Indels: 10
0.98 0.01 0.01
Matches are distributed among these distances:
554 2 0.00
555 68 0.06
556 197 0.18
557 825 0.75
558 2 0.00
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (556 bp):
TCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATT
TCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTATT
TTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTT
TCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
CTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAAT
TTCAATCTTTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTG
AGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGA
CACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGC
CTCAAGACACGTTGAGGTATTTTCAATTTCTGCTTC
Done.