Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 220 of 255
Found at i:73213123 original size:45 final size:43
Alignment explanation
Indices: 73212965--73213170 Score: 129
Period size: 41 Copynumber: 4.8 Consensus size: 43
73212955 AATAAACATA
* * * * *
73212965 TCTTATCTCCTTGAAGTTACAATAGAGCAA-ATCAAAAC-A-AG
1 TCTTATCTCC-TGAAGTTACAGTGGAGCAAGTTGAAGACAATAG
* * * *
73213006 CCTTATCTCCTCGAAGTTACAGTGGAGCAGGTTGAAGTCACTAG
1 TCTTATCTCCT-GAAGTTACAGTGGAGCAAGTTGAAGACAATAG
* * *
73213050 TCTTATCTCCCTGAAATTGCAATGGAGCATAG-TGAAGACAATAG
1 TCTTATCT-CCTGAAGTTACAGTGGAGCA-AGTTGAAGACAATAG
* * * *
73213094 ATCTTATCTCTCTGAAGTTACAGTAGAGC-AGATCAAAACAA-A-
1 -TCTTATCTC-CTGAAGTTACAGTGGAGCAAGTTGAAGACAATAG
* * *
73213136 CCTTATCTCGCTGAAGTTGCAGTGGAGCAGGTTGA
1 TCTTATCTC-CTGAAGTTACAGTGGAGCAAGTTGA
73213171 TATTACAAGT
Statistics
Matches: 126, Mismatches: 29, Indels: 19
0.72 0.17 0.11
Matches are distributed among these distances:
40 1 0.01
41 48 0.38
42 7 0.06
43 3 0.02
44 41 0.33
45 26 0.21
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (43 bp):
TCTTATCTCCTGAAGTTACAGTGGAGCAAGTTGAAGACAATAG
Found at i:73213129 original size:130 final size:130
Alignment explanation
Indices: 73212964--73213208 Score: 363
Period size: 130 Copynumber: 1.9 Consensus size: 130
73212954 AAATAAACAT
*
73212964 ATCTTATCTCCTTGAAGTTACAATAGAGCAAATCAAAACAAGCCTTATCTC-CTCGAAGTTACAG
1 ATCTTATCTCCTTGAAGTTACAATAGAGCAAATCAAAACAAACCTTATCTCGCT-GAAGTTACAG
*
73213028 TGGAGCAGGTTGA-AGTCACTAGTCTTATCTCCCTGAAA-TTGCAATGGAGCATAGTGAAGACAA
65 TGGAGCAGGTTGATA-TCACAAGTCTTATCTCCCT-AAATTTGCAATGGAGCATAGTGAAGACAA
73213091 TAG
128 TAG
* * *
73213094 ATCTTATCT-CTCTGAAGTTACAGTAGAGCAGATCAAAACAAACCTTATCTCGCTGAAGTTGCAG
1 ATCTTATCTCCT-TGAAGTTACAATAGAGCAAATCAAAACAAACCTTATCTCGCTGAAGTTACAG
* *
73213158 TGGAGCAGGTTGATATTACAAGTCTTATCTCCCTAAATTTGCAGTGGAGCA
65 TGGAGCAGGTTGATATCACAAGTCTTATCTCCCTAAATTTGCAATGGAGCA
73213209 GATTAAACAA
Statistics
Matches: 104, Mismatches: 7, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
129 5 0.05
130 96 0.92
131 3 0.03
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (130 bp):
ATCTTATCTCCTTGAAGTTACAATAGAGCAAATCAAAACAAACCTTATCTCGCTGAAGTTACAGT
GGAGCAGGTTGATATCACAAGTCTTATCTCCCTAAATTTGCAATGGAGCATAGTGAAGACAATAG
Found at i:73214820 original size:3 final size:3
Alignment explanation
Indices: 73214798--73215128 Score: 190
Period size: 3 Copynumber: 110.7 Consensus size: 3
73214788 CCTTTTTAAG
* * ** *
73214798 TTA TTT TTA CTA TT- TTA TTA TTA AAA TTAA TTAA TTA CTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TT-A TTA TTA TTA TTA
* * * * *
73214844 ATA TTT TTA TTA TTA CTA TTA TTA TTA TTA TTCC TT- TTA CTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA
* * * * *
73214889 TTA TTTA TTA TCA ATA TTA TTA TTA TTA CTA TTA TTA CTA TTT TTA
1 TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * ** * * *
73214935 TTT TTA TTA CTA TTA ACA TTA GTA CTA TTA TCA TT- TTA TT- TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * * * * *
73214981 TTA TTA TCA TTT TTG TAA TTA CTA TTA CTA TT- TTT TTA CTA CTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
** ** *
73215028 TTTA GCA -TA TTA TTA TT- TCTA TTA TTA TTA CCA TCA TTA TTA TTA
1 -TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * *
73215073 TTA TTA TTA TTA CTA CTA CTA CTA TTA TTA TTA TTA TTA TTA TTA TCA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
73215121 TTA TTA TT
1 TTA TTA TT
73215129 GTCATTTTTA
Statistics
Matches: 249, Mismatches: 67, Indels: 24
0.73 0.20 0.07
Matches are distributed among these distances:
2 12 0.05
3 221 0.89
4 16 0.06
ACGTcount: A:0.31, C:0.08, G:0.01, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:73215146 original size:14 final size:16
Alignment explanation
Indices: 73215121--73215154 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
73215111 ATTATTATCA
73215121 TTATTATTGTCAT-TT
1 TTATTATTGTCATATT
73215136 TTATT-TTGTCATATT
1 TTATTATTGTCATATT
73215151 TTAT
1 TTAT
73215155 ATTTTTATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.21, C:0.06, G:0.06, T:0.68
Consensus pattern (16 bp):
TTATTATTGTCATATT
Found at i:73225077 original size:20 final size:20
Alignment explanation
Indices: 73225049--73225095 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
73225039 AGGGGCACAC
*
73225049 GCCCTTGTGGCCTGGGACAT
1 GCCCGTGTGGCCTGGGACAT
73225069 GCCCGTGTGGCCTGGGACAT
1 GCCCGTGTGGCCTGGGACAT
*
73225089 GGCCGTG
1 GCCCGTG
73225096 GGACTAACCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.09, C:0.30, G:0.40, T:0.21
Consensus pattern (20 bp):
GCCCGTGTGGCCTGGGACAT
Found at i:73227201 original size:3 final size:3
Alignment explanation
Indices: 73227193--73227228 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
73227183 CTATCTCAAT
73227193 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
73227229 GTAAATATCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:73229384 original size:50 final size:51
Alignment explanation
Indices: 73229259--73229391 Score: 139
Period size: 50 Copynumber: 2.6 Consensus size: 51
73229249 ATATTGTATC
* *
73229259 ATAATTATTTT-TCTCTAATTACTTTAAATTAATTAAGAGATAAAAAATAGA
1 ATAATTATTTTATCTCTAATTA-ATTAAATTAATTAAGAGATAAAAAATAAA
* * * ** * *
73229310 A-AA-TAATTTATCACTAATTAAATTAAAATAATTAAGTTAT-AATATTAAA
1 ATAATTATTTTATCTCTAATT-AATTAAATTAATTAAGAGATAAAAAATAAA
73229359 ATAATTATTTTATCTCTAATTAATTAAATTAAT
1 ATAATTATTTTATCTCTAATTAATTAAATTAAT
73229392 AGAAGATAAA
Statistics
Matches: 66, Mismatches: 12, Indels: 9
0.76 0.14 0.10
Matches are distributed among these distances:
49 12 0.18
50 38 0.58
51 16 0.24
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.43
Consensus pattern (51 bp):
ATAATTATTTTATCTCTAATTAATTAAATTAATTAAGAGATAAAAAATAAA
Found at i:73234617 original size:158 final size:157
Alignment explanation
Indices: 73234324--73234787 Score: 566
Period size: 158 Copynumber: 2.9 Consensus size: 157
73234314 TATTTTTTTT
* * *
73234324 AAAAA-GAGAAAGTTTAGATTTTAAAAATAAAAATATATTTTTTTAGTCATTTTAAAGGAAAATT
1 AAAAAGGAAAAAGTTTAGATTTTAAAAATAAAAAAATATTTTTTTAGTCATTTTAAAGG-AAAGT
*
73234388 TTAAATTTTAAATTTTAAAACAAAGTTTTGATTTTTCTTCAACTATTTC-AATATAAAAGCTTTA
65 TT--A----AAATTTTAAAACAAA-TTTTGATTTTT-TTCAACTATTTCGAA-ATAAAAGTTTTA
*
73234452 ATCTTTAAGAAAAGTAGCGATTTTTTT-AAAG-AAAA
121 ATCTTTAAGAAAAGTAGTGATTTTTTTAAAAGAAAAA
* * *
73234487 AAAGAGAGAAAAAGTTTAGATTTTAAAAATAAAAAAATATATTTTTTATTTATTTTAAAGGAAAG
1 AAAAAG-GAAAAAGTTTAGATTTTAAAAATAAAAAAATAT-TTTTTTAGTCATTTTAAAGGAAAG
* *
73234552 TTTAAAATTTTAAAACAATTTTTTGATTTTTTTCAACTATTTCGAAATAAAAGTTTTTATCTTTA
64 TTTAAAATTTTAAAACAA-ATTTTGATTTTTTTCAACTATTTCGAAATAAAAGTTTTAATCTTTA
73234617 AG-AAAGTAGTGATTTTTTTTAAAAGAAAAA
128 AGAAAAGTAGTGA-TTTTTTTAAAAGAAAAA
* * * *
73234647 AAAAAGGAGAAAGTTTAGATTTTAAAAA-ACAAAATATGTTTTTTTAGTCATTTTAAAAGAAAGT
1 AAAAAGGAAAAAGTTTAGATTTTAAAAATA-AAAAAATATTTTTTTAGTCATTTTAAAGGAAAGT
** * * *
73234711 TTAAAATTTTAAAA-AAAAATTGATTTTTTTCAATTATTTCGAAAT-AAAGTTTTGATCTTTAAA
65 TTAAAATTTTAAAACAAATTTTGATTTTTTTCAACTATTTCGAAATAAAAGTTTTAATCTTTAAG
73234774 AAAAGTAGTGATTT
130 AAAAGTAGTGATTT
73234788 AAAAAAAAAC
Statistics
Matches: 268, Mismatches: 23, Indels: 28
0.84 0.07 0.09
Matches are distributed among these distances:
155 19 0.07
156 35 0.13
157 11 0.04
158 75 0.28
159 59 0.22
160 9 0.03
163 5 0.02
165 37 0.14
166 18 0.07
ACGTcount: A:0.45, C:0.04, G:0.10, T:0.41
Consensus pattern (157 bp):
AAAAAGGAAAAAGTTTAGATTTTAAAAATAAAAAAATATTTTTTTAGTCATTTTAAAGGAAAGTT
TAAAATTTTAAAACAAATTTTGATTTTTTTCAACTATTTCGAAATAAAAGTTTTAATCTTTAAGA
AAAGTAGTGATTTTTTTAAAAGAAAAA
Found at i:73238696 original size:41 final size:42
Alignment explanation
Indices: 73238651--73238745 Score: 106
Period size: 41 Copynumber: 2.3 Consensus size: 42
73238641 AAACATAAAA
* **
73238651 CAAAGATAATATTATCT-AATAAAAGTTGAAAAG-TCCAAACC
1 CAAAGACAATATTATCTAAAT-AAAGTCCAAAAGCTCCAAACC
* *
73238692 CAAAGACAATTTTGTCTAAATAAAGTCCAAAAGCTCCAAACC
1 CAAAGACAATATTATCTAAATAAAGTCCAAAAGCTCCAAACC
73238734 CACAA-ACAATAT
1 CA-AAGACAATAT
73238746 GGAAACCCAA
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
41 24 0.53
42 19 0.42
43 2 0.04
ACGTcount: A:0.49, C:0.20, G:0.08, T:0.22
Consensus pattern (42 bp):
CAAAGACAATATTATCTAAATAAAGTCCAAAAGCTCCAAACC
Found at i:73239934 original size:33 final size:33
Alignment explanation
Indices: 73239892--73239987 Score: 138
Period size: 33 Copynumber: 2.9 Consensus size: 33
73239882 TCAAATCTAG
* *
73239892 TTCCCCCAAACCATACCTGTTAGTTTACTTCAC
1 TTCCCCCAAAGCATACCTATTAGTTTACTTCAC
* *
73239925 TTCCCCCAAAGCATTCTTATTAGTTTACTTCAC
1 TTCCCCCAAAGCATACCTATTAGTTTACTTCAC
* *
73239958 TTCCCCCAAAGAATGCCTATTAGTTTACTT
1 TTCCCCCAAAGCATACCTATTAGTTTACTT
73239988 TACTATTTGC
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 56 1.00
ACGTcount: A:0.25, C:0.31, G:0.07, T:0.36
Consensus pattern (33 bp):
TTCCCCCAAAGCATACCTATTAGTTTACTTCAC
Found at i:73256772 original size:19 final size:19
Alignment explanation
Indices: 73256748--73256790 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
73256738 TATATTATCT
73256748 TAAATTGT-TAAAATTTATA
1 TAAATTGTCTAAAATTT-TA
* *
73256767 TAAATTTTCTAAACTTTTA
1 TAAATTGTCTAAAATTTTA
73256786 TAAAT
1 TAAAT
73256791 AATATTGTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.49
Consensus pattern (19 bp):
TAAATTGTCTAAAATTTTA
Found at i:73257346 original size:30 final size:30
Alignment explanation
Indices: 73257310--73257370 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
73257300 ATTTTATTGT
*
73257310 TAATTTTTTTATTATTTTAAAGACATTTGC
1 TAATTTTGTTATTATTTTAAAGACATTTGC
* *
73257340 TAATTTTGTTATTATTTTAGAGGCATTTGC
1 TAATTTTGTTATTATTTTAAAGACATTTGC
73257370 T
1 T
73257371 TGTTAAATTG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.26, C:0.07, G:0.11, T:0.56
Consensus pattern (30 bp):
TAATTTTGTTATTATTTTAAAGACATTTGC
Found at i:73257521 original size:12 final size:12
Alignment explanation
Indices: 73257486--73257523 Score: 53
Period size: 11 Copynumber: 3.3 Consensus size: 12
73257476 GTTTATATAT
*
73257486 ATATTAAAATT-
1 ATATAAAAATTA
73257497 ATATAAAAA-TA
1 ATATAAAAATTA
73257508 ATATAAAAATTA
1 ATATAAAAATTA
73257520 ATAT
1 ATAT
73257524 GGGCGGGTCG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
10 1 0.04
11 17 0.71
12 6 0.25
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (12 bp):
ATATAAAAATTA
Found at i:73258458 original size:23 final size:25
Alignment explanation
Indices: 73258432--73258478 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
73258422 TATCATTCAT
*
73258432 TTCATTATAT-CA-ATATTTTATGC
1 TTCATCATATCCATATATTTTATGC
*
73258455 TTCATCATTTCCATATATTTTATG
1 TTCATCATATCCATATATTTTATG
73258479 TATATTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 2 0.10
25 10 0.50
ACGTcount: A:0.28, C:0.15, G:0.04, T:0.53
Consensus pattern (25 bp):
TTCATCATATCCATATATTTTATGC
Found at i:73258791 original size:46 final size:46
Alignment explanation
Indices: 73258739--73259039 Score: 352
Period size: 46 Copynumber: 6.7 Consensus size: 46
73258729 TTTGACGTGA
* * * * * *
73258739 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
* ** * * *
73258785 TGCCATAGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
73258831 TGCCATGGTATCTTTCAACCAAT-GTCTTACACATCTCATATCAGGT
1 TGCCATGGTATCTTTCAACC-ATGGTCTTACACATTTCATATCAGGT
*
73258877 TGCCATGGTATCTTTCAACCATAGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
73258923 TGCCATGGTATCTTTCAACCATAGT-TT-TACA---C--A-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
73258961 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATTAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
73259007 TGCCATGGAATCTTTCAACCATGGTCTTACACA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA
73259040 CAGTGTAATA
Statistics
Matches: 226, Mismatches: 18, Indels: 22
0.85 0.07 0.08
Matches are distributed among these distances:
38 29 0.13
39 3 0.01
40 3 0.01
41 1 0.00
43 1 0.00
44 3 0.01
45 9 0.04
46 175 0.77
47 2 0.01
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:73258969 original size:38 final size:38
Alignment explanation
Indices: 73258918--73259042 Score: 142
Period size: 38 Copynumber: 3.1 Consensus size: 38
73258908 CATTTCATAT
*
73258918 CAGGTTGCCATGGTATCTTTCAACCATAGTTTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATAGTCTTACACA
*
73258956 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATAGTCTTACACA
* *
73258994 TTTCATATTAGGTTGCCATGGAATCTTTCAACCATGGTCTTACACA
1 ---C-----AGGTTGCCATGGTATCTTTCAACCATAGTCTTACACA
73259040 CAG
1 CAG
73259043 TGTAATACCC
Statistics
Matches: 76, Mismatches: 3, Indels: 16
0.80 0.03 0.17
Matches are distributed among these distances:
38 38 0.50
41 1 0.01
43 1 0.01
46 36 0.47
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.34
Consensus pattern (38 bp):
CAGGTTGCCATGGTATCTTTCAACCATAGTCTTACACA
Found at i:73259013 original size:84 final size:84
Alignment explanation
Indices: 73258872--73259042 Score: 297
Period size: 84 Copynumber: 2.0 Consensus size: 84
73258862 CATCTCATAT
*
73258872 CAGGTTGCCATGGTATCTTTCAACCATAGTCTTACACATTTCATATCAGGTTGCCATGGTATCTT
1 CAGGTTGCCATGGTATCTTTCAACCATAGTCTTACACATTTCATATCAGGTTGCCATGGAATCTT
*
73258937 TCAACCATAGTTTTACACA
66 TCAACCATAGTCTTACACA
* *
73258956 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATTAGGTTGCCATGGAATCTT
1 CAGGTTGCCATGGTATCTTTCAACCATAGTCTTACACATTTCATATCAGGTTGCCATGGAATCTT
*
73259021 TCAACCATGGTCTTACACA
66 TCAACCATAGTCTTACACA
73259040 CAG
1 CAG
73259043 TGTAATACCC
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
84 82 1.00
ACGTcount: A:0.26, C:0.24, G:0.16, T:0.35
Consensus pattern (84 bp):
CAGGTTGCCATGGTATCTTTCAACCATAGTCTTACACATTTCATATCAGGTTGCCATGGAATCTT
TCAACCATAGTCTTACACA
Found at i:73269150 original size:20 final size:20
Alignment explanation
Indices: 73269125--73269179 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
73269115 TGTGGTTCAA
*
73269125 CTCATTCGAGCTCAAGTTAG
1 CTCATTCGAGCTCAAGTCAG
*
73269145 CTCATTCGTGCTCAAGTCAG
1 CTCATTCGAGCTCAAGTCAG
*
73269165 CTCATTCAAGCTCAA
1 CTCATTCGAGCTCAA
73269180 TTTAACTCGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.29
Consensus pattern (20 bp):
CTCATTCGAGCTCAAGTCAG
Found at i:73269562 original size:45 final size:45
Alignment explanation
Indices: 73269512--73269705 Score: 289
Period size: 45 Copynumber: 4.3 Consensus size: 45
73269502 GAACGGCATG
*
73269512 AAATTAAGGAAGCATTTGACCAACATCATGCATAATTTATGGAAC
1 AAATTAAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAC
* *
73269557 AAATTAAGGAAGCACTTGACCAACATCATGCATAATTCATGGAAG
1 AAATTAAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAC
* * *
73269602 AATTTGAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAG
1 AAATTAAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAC
* * * *
73269647 AATTTAAGGAAGCATTTGGCCAACATCATGCATAATTTAAGGAAC
1 AAATTAAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAC
*
73269692 AAATTGAGGAAGCA
1 AAATTAAGGAAGCA
73269706 CCATGGCCGA
Statistics
Matches: 136, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 136 1.00
ACGTcount: A:0.41, C:0.15, G:0.19, T:0.25
Consensus pattern (45 bp):
AAATTAAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAC
Found at i:73270441 original size:68 final size:70
Alignment explanation
Indices: 73270326--73270474 Score: 266
Period size: 68 Copynumber: 2.1 Consensus size: 70
73270316 TTATGGTTTT
73270326 GTAAAAAAAATCAAAAAAAAAAAAAATTTTGCCTACGGTCTACGCGCGGACGAAAAGAACGTGAA
1 GTAAAAAAAATC-AAAAAAAAAAAAATTTTGCCTACGGTCTACGCGCGGACGAAAAGAACGTGAA
73270391 AGATCC
65 AGATCC
*
73270397 GTAAAAAAAATC-AAAAAAAAAAAA-TTTGCCTACGGTCTAGGCGCGGACGAAAAGAACGTGAAA
1 GTAAAAAAAATCAAAAAAAAAAAAATTTTGCCTACGGTCTACGCGCGGACGAAAAGAACGTGAAA
73270460 GATCC
66 GATCC
73270465 GTAAAAAAAA
1 GTAAAAAAAA
73270475 AAAAGAGTCT
Statistics
Matches: 77, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
68 53 0.69
69 12 0.16
71 12 0.16
ACGTcount: A:0.51, C:0.15, G:0.19, T:0.15
Consensus pattern (70 bp):
GTAAAAAAAATCAAAAAAAAAAAAATTTTGCCTACGGTCTACGCGCGGACGAAAAGAACGTGAAA
GATCC
Found at i:73272986 original size:20 final size:20
Alignment explanation
Indices: 73272961--73273015 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
73272951 TGTGGTTCAA
*
73272961 CTCATTCGAGCTCAAGTTAG
1 CTCATTCGAGCTCAAGTCAG
*
73272981 CTCATTCGTGCTCAAGTCAG
1 CTCATTCGAGCTCAAGTCAG
*
73273001 CTCATTCAAGCTCAA
1 CTCATTCGAGCTCAA
73273016 TTTAACTCGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.29
Consensus pattern (20 bp):
CTCATTCGAGCTCAAGTCAG
Found at i:73273398 original size:45 final size:45
Alignment explanation
Indices: 73273348--73273541 Score: 289
Period size: 45 Copynumber: 4.3 Consensus size: 45
73273338 GAACGGCATG
*
73273348 AAATTAAGGAAGCATTTGACCAACATCATGCATAATTTATGGAAC
1 AAATTAAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAC
* *
73273393 AAATTAAGGAAGCACTTGACCAACATCATGCATAATTCATGGAAG
1 AAATTAAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAC
* * *
73273438 AATTTGAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAG
1 AAATTAAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAC
* * * *
73273483 AATTTAAGGAAGCATTTGGCCAACATCATGCATAATTTAAGGAAC
1 AAATTAAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAC
*
73273528 AAATTGAGGAAGCA
1 AAATTAAGGAAGCA
73273542 CCATGGCCGA
Statistics
Matches: 136, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 136 1.00
ACGTcount: A:0.41, C:0.15, G:0.19, T:0.25
Consensus pattern (45 bp):
AAATTAAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAC
Found at i:73275897 original size:50 final size:49
Alignment explanation
Indices: 73275817--73276097 Score: 266
Period size: 48 Copynumber: 5.8 Consensus size: 49
73275807 AAGGGTAAAA
* *
73275817 TGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCAG
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATATC-G
* * * *
73275867 TGCCGATGCCATGTTCCAAACATGGCCTTACACTAGC-C-CACATGTCG
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATATCG
* * * *
73275914 AAGCCGATGCCATGTCCCAGATATGGTCTTACACTGGCTCTCATATATCGG
1 -TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATATC-G
* * * * * *
73275965 TGCTGATGCTATGTTCCAAACATGATCTTACACTAGC-C-CACATGTCG
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATATCG
* * * * **
73276012 AAGCTGATGCCATGTCCCAGACACGGTCTTACACTAGCTCTCATATA-AA
1 -TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATATCG
* * *
73276061 TGTCGATGCCATGTTCGAAACATGGTCTTACACTAGC
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGC
73276098 CCACATAACC
Statistics
Matches: 183, Mismatches: 41, Indels: 16
0.76 0.17 0.07
Matches are distributed among these distances:
47 2 0.01
48 104 0.57
49 4 0.02
50 72 0.39
51 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.27
Consensus pattern (49 bp):
TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATATCG
Found at i:73275995 original size:98 final size:97
Alignment explanation
Indices: 73275822--73276103 Score: 433
Period size: 98 Copynumber: 2.9 Consensus size: 97
73275812 TAAAATGCCA
73275822 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCAGTGCCGATGCCATGTTCCAAA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCAGTG-CGATGCCATGTTCCAAA
*
73275887 CATGGCCTTACACTAGCCCACATGTCGAAGCCG
65 CATGGTCTTACACTAGCCCACATGTCGAAGCCG
* * * *
73275920 ATGCCATGTCCCAGATATGGTCTTACACTGGCTCTCATATATCGGTGCTGATGCTATGTTCCAAA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCAGTGC-GATGCCATGTTCCAAA
* *
73275985 CATGATCTTACACTAGCCCACATGTCGAAGCTG
65 CATGGTCTTACACTAGCCCACATGTCGAAGCCG
* * *
73276018 ATGCCATGTCCCAGACACGGTCTTACACTAGCTCTCATATA--AATGTCGATGCCATGTTCGAAA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCAGTG-CGATGCCATGTTCCAAA
73276081 CATGGTCTTACACTAGCCCACAT
65 CATGGTCTTACACTAGCCCACAT
73276104 AACCCTAGTA
Statistics
Matches: 167, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
96 38 0.23
97 2 0.01
98 127 0.76
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (97 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCAGTGCGATGCCATGTTCCAAAC
ATGGTCTTACACTAGCCCACATGTCGAAGCCG
Found at i:73277116 original size:16 final size:16
Alignment explanation
Indices: 73277092--73277122 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
73277082 TAAGTAAATA
*
73277092 AAATGAAATAAAGAAT
1 AAATAAAATAAAGAAT
73277108 AAATAAAATAAAGAA
1 AAATAAAATAAAGAA
73277123 ACAAAAGAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.74, C:0.00, G:0.10, T:0.16
Consensus pattern (16 bp):
AAATAAAATAAAGAAT
Found at i:73277191 original size:17 final size:17
Alignment explanation
Indices: 73277162--73277194 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
73277152 AATCAAACGA
73277162 AATAGAAAGAAAGAAAG
1 AATAGAAAGAAAGAAAG
73277179 AATA-AAAGAAAAGAAA
1 AATAGAAAG-AAAGAAA
73277195 AAGGAGAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.76, C:0.00, G:0.18, T:0.06
Consensus pattern (17 bp):
AATAGAAAGAAAGAAAG
Found at i:73277943 original size:28 final size:27
Alignment explanation
Indices: 73277889--73277943 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 27
73277879 GTATACATGT
*
73277889 GTGAAATTGAATTGTATAATGATTTGTG
1 GTGAAATTGAATTGTAT-ATGAATTGTG
73277917 GTGAAATTGAAATTGTGAT-TGAATTGT
1 GTGAAATTG-AATTGT-ATATGAATTGT
73277944 TATTGCGATG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
28 16 0.67
29 6 0.25
30 2 0.08
ACGTcount: A:0.33, C:0.00, G:0.25, T:0.42
Consensus pattern (27 bp):
GTGAAATTGAATTGTATATGAATTGTG
Found at i:73278604 original size:13 final size:13
Alignment explanation
Indices: 73278568--73278604 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
73278558 TGATAGTTTG
*
73278568 GTATGAATTTATAT
1 GTATG-ATTTGTAT
73278582 GTATGATTTGTAT
1 GTATGATTTGTAT
73278595 GTATGATTTG
1 GTATGATTTG
73278605 CTAATTATCT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 17 0.77
14 5 0.23
ACGTcount: A:0.27, C:0.00, G:0.22, T:0.51
Consensus pattern (13 bp):
GTATGATTTGTAT
Found at i:73299220 original size:17 final size:16
Alignment explanation
Indices: 73299174--73299231 Score: 50
Period size: 16 Copynumber: 3.6 Consensus size: 16
73299164 TTAATAACAG
73299174 ATTTA-AAATATAATAT
1 ATTTATAAA-ATAATAT
* *
73299190 A-TAATAAAAAAATAT
1 ATTTATAAAATAATAT
73299205 ATTTATAAGAATAATA-
1 ATTTATAA-AATAATAT
73299221 ATTATATAAAA
1 ATT-TATAAAA
73299232 ATATAAAATA
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
15 9 0.26
16 14 0.41
17 11 0.32
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (16 bp):
ATTTATAAAATAATAT
Found at i:73299234 original size:17 final size:17
Alignment explanation
Indices: 73299178--73299234 Score: 57
Period size: 17 Copynumber: 3.4 Consensus size: 17
73299168 TAACAGATTT
73299178 AAAAT-ATAATATATAATA
1 AAAATAATAAT-TAT-ATA
73299196 AAAA-AATATATT-TATA
1 AAAATAATA-ATTATATA
*
73299212 AGAATAATAATTATATA
1 AAAATAATAATTATATA
73299229 AAAATA
1 AAAATA
73299235 TAAAATATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
16 9 0.27
17 14 0.42
18 8 0.24
19 2 0.06
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (17 bp):
AAAATAATAATTATATA
Found at i:73299565 original size:46 final size:45
Alignment explanation
Indices: 73299513--73299625 Score: 117
Period size: 46 Copynumber: 2.5 Consensus size: 45
73299503 CATAAAGGTA
* *
73299513 TAAAATATAAAATAATTATAATTTATAATATGAAAGT-GTATATATG-
1 TAAAATATAAAATAA-TATAATTAATAATATGAAA-TAATATAT-TGT
73299559 TAAAATAATATATAATAA-ATAA-TAATAATATGAAATAATATATTGT
1 TAAAAT-ATA-A-AATAATATAATTAATAATATGAAATAATATATTGT
*
73299605 TAAAATGTAAAATAATATAAT
1 TAAAATATAAAATAATATAAT
73299626 AGTATAAAGA
Statistics
Matches: 57, Mismatches: 3, Indels: 15
0.76 0.04 0.20
Matches are distributed among these distances:
43 5 0.09
44 5 0.09
45 5 0.09
46 29 0.51
47 7 0.12
48 1 0.02
49 5 0.09
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.37
Consensus pattern (45 bp):
TAAAATATAAAATAATATAATTAATAATATGAAATAATATATTGT
Found at i:73299572 original size:16 final size:15
Alignment explanation
Indices: 73299551--73299601 Score: 52
Period size: 16 Copynumber: 3.3 Consensus size: 15
73299541 TATGAAAGTG
73299551 TATATATGTAAAATAA
1 TATATATGT-AAATAA
*
73299567 TATATA-ATAAATAA
1 TATATATGTAAATAA
73299581 TAATAATATG-AAATAA
1 T-AT-ATATGTAAATAA
73299597 TATAT
1 TATAT
73299602 TGTTAAAATG
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
14 9 0.30
15 5 0.17
16 16 0.53
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (15 bp):
TATATATGTAAATAA
Found at i:73299581 original size:40 final size:39
Alignment explanation
Indices: 73299481--73299582 Score: 100
Period size: 40 Copynumber: 2.5 Consensus size: 39
73299471 CTTTAATGAT
*
73299481 AATAATATATAGATAAAAAATACATAAAGGTATAAAATATAA
1 AATAATATATA-ATAAATAAT--ATAAAGGTATAAAATATAA
** * *
73299523 AATAAT-TATAATTTATAATATGAAAGTGTAT-ATATGTAA
1 AATAATATATAATAAATAATAT-AAAG-GTATAAAATATAA
73299562 AATAATATATAATAAATAATA
1 AATAATATATAATAAATAATA
73299583 ATAATATGAA
Statistics
Matches: 50, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
38 2 0.04
39 16 0.32
40 22 0.44
41 4 0.08
42 6 0.12
ACGTcount: A:0.59, C:0.01, G:0.07, T:0.33
Consensus pattern (39 bp):
AATAATATATAATAAATAATATAAAGGTATAAAATATAA
Found at i:73313575 original size:24 final size:25
Alignment explanation
Indices: 73313543--73313603 Score: 88
Period size: 24 Copynumber: 2.5 Consensus size: 25
73313533 CGTAATGGAT
*
73313543 TAATTATTATATTGTTTTAATT-AA
1 TAATTATTATATTCTTTTAATTAAA
*
73313567 TAATTATTATATTCTTTTGATTAAA
1 TAATTATTATATTCTTTTAATTAAA
*
73313592 TAATTGTTATAT
1 TAATTATTATAT
73313604 ATAACATATA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
24 20 0.61
25 13 0.39
ACGTcount: A:0.36, C:0.02, G:0.05, T:0.57
Consensus pattern (25 bp):
TAATTATTATATTCTTTTAATTAAA
Found at i:73316060 original size:14 final size:15
Alignment explanation
Indices: 73316019--73316060 Score: 50
Period size: 14 Copynumber: 2.7 Consensus size: 15
73316009 ATTTCATCCA
73316019 ATAAAAACTAAAATATT
1 ATAAAAA-T-AAATATT
73316036 ATAAAAATAAATATT
1 ATAAAAATAAATATT
*
73316051 -TAATAATAAA
1 ATAAAAATAAA
73316061 ATGCGCCATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 9 0.38
15 7 0.29
16 1 0.04
17 7 0.29
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (15 bp):
ATAAAAATAAATATT
Found at i:73316062 original size:15 final size:16
Alignment explanation
Indices: 73316019--73316062 Score: 56
Period size: 15 Copynumber: 2.8 Consensus size: 16
73316009 ATTTCATCCA
73316019 ATAAAAACTAAAATATT
1 ATAAAAA-TAAAATATT
73316036 ATAAAAAT-AAATATT
1 ATAAAAATAAAATATT
*
73316051 -TAATAATAAAAT
1 ATAAAAATAAAAT
73316063 GCGCCATACG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
14 6 0.24
15 11 0.44
16 1 0.04
17 7 0.28
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (16 bp):
ATAAAAATAAAATATT
Found at i:73317158 original size:17 final size:18
Alignment explanation
Indices: 73317131--73317168 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
73317121 ATATTCAATT
*
73317131 TATGAAAAATTATTAAAA
1 TATGAAAAATTACTAAAA
73317149 TATG-AAAATTACTAAAA
1 TATGAAAAATTACTAAAA
73317166 TAT
1 TAT
73317169 ATAAAAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.58, C:0.03, G:0.05, T:0.34
Consensus pattern (18 bp):
TATGAAAAATTACTAAAA
Found at i:73317175 original size:19 final size:18
Alignment explanation
Indices: 73317054--73317176 Score: 72
Period size: 19 Copynumber: 6.4 Consensus size: 18
73317044 GAAAAAAAAG
73317054 ATAAAAATTATTAAA-AT
1 ATAAAAATTATTAAATAT
*
73317071 CAATAAAAA-TATTAAAAATT
1 --ATAAAAATTATTAAATA-T
* *
73317091 ATAGCAATATATATAGAAATAT
1 ATA--AAAAT-TAT-TAAATAT
* *
73317113 ATAAAAATATATTCAATTT
1 ATAAAAAT-TATTAAATAT
73317132 ATGAAAAATTATTAAA-AT
1 AT-AAAAATTATTAAATAT
* *
73317150 ATGAAAATTACTAAAATAT
1 ATAAAAATTA-TTAAATAT
73317169 ATAAAAAT
1 ATAAAAAT
73317177 ATATAAATTT
Statistics
Matches: 82, Mismatches: 12, Indels: 20
0.72 0.11 0.18
Matches are distributed among these distances:
17 7 0.09
18 17 0.21
19 29 0.35
20 18 0.22
22 7 0.09
23 4 0.05
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.33
Consensus pattern (18 bp):
ATAAAAATTATTAAATAT
Found at i:73317177 original size:10 final size:10
Alignment explanation
Indices: 73317054--73317183 Score: 73
Period size: 10 Copynumber: 13.5 Consensus size: 10
73317044 GAAAAAAAAG
73317054 ATAAAAAT-T
1 ATAAAAATAT
*
73317063 ATTAAAATCA-
1 ATAAAAAT-AT
73317073 ATAAAAATAT
1 ATAAAAATAT
73317083 -TAAAAAT-T
1 ATAAAAATAT
*
73317091 ATAGCAATATAT
1 ATA--AAAATAT
*
73317103 ATAGAAATAT
1 ATAAAAATAT
73317113 ATAAAAATAT
1 ATAAAAATAT
** *
73317123 AT-TCAATTT
1 ATAAAAATAT
73317132 ATGAAAAAT-T
1 AT-AAAAATAT
*
73317142 AT-TAAA-AT
1 ATAAAAATAT
*
73317150 ATGAAAAT-T
1 ATAAAAATAT
73317159 ACT-AAAATAT
1 A-TAAAAATAT
73317169 ATAAAAATAT
1 ATAAAAATAT
73317179 ATAAA
1 ATAAA
73317184 TTTTTTTAAT
Statistics
Matches: 93, Mismatches: 13, Indels: 29
0.69 0.10 0.21
Matches are distributed among these distances:
8 7 0.08
9 34 0.37
10 41 0.44
11 7 0.08
12 4 0.04
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (10 bp):
ATAAAAATAT
Found at i:73317184 original size:27 final size:27
Alignment explanation
Indices: 73317107--73317185 Score: 74
Period size: 27 Copynumber: 2.9 Consensus size: 27
73317097 ATATATATAG
*
73317107 AAATATATAAAAATATATTCAATTTATGA
1 AAATATATAAAAATATA-T-AAATTATGA
*
73317136 AAA-ATTATTAAAATATGA-AAATTACT-A
1 AAATA-TATAAAAATAT-ATAAATTA-TGA
73317163 AAATATATAAAAATATATAAATT
1 AAATATATAAAAATATATAAATT
73317186 TTTTTAATAA
Statistics
Matches: 42, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
26 1 0.02
27 24 0.57
28 3 0.07
29 13 0.31
30 1 0.02
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.35
Consensus pattern (27 bp):
AAATATATAAAAATATATAAATTATGA
Found at i:73317198 original size:18 final size:20
Alignment explanation
Indices: 73317170--73317221 Score: 72
Period size: 18 Copynumber: 2.7 Consensus size: 20
73317160 CTAAAATATA
*
73317170 TAAAAATATATAAATTTTTT
1 TAAATATATATAAATTTTTT
*
73317190 T-AATA-ATATAATTTTTTT
1 TAAATATATATAAATTTTTT
73317208 TAAATATATATAAA
1 TAAATATATATAAA
73317222 ATTTATAAGA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 13 0.48
19 7 0.26
20 7 0.26
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
TAAATATATATAAATTTTTT
Found at i:73319976 original size:16 final size:17
Alignment explanation
Indices: 73319950--73319982 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
73319940 ATTATTTCCC
73319950 TAATCTATTTTTATAAT
1 TAATCTATTTTTATAAT
73319967 TAAT-TATTTTTATAAT
1 TAATCTATTTTTATAAT
73319983 ATTTTTGTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (17 bp):
TAATCTATTTTTATAAT
Found at i:73320865 original size:24 final size:22
Alignment explanation
Indices: 73320830--73320891 Score: 70
Period size: 24 Copynumber: 2.6 Consensus size: 22
73320820 GGCGCGACCC
73320830 ATTTTTTTAATAATATAATTTT
1 ATTTTTTTAATAATATAATTTT
* *
73320852 ATTTTTTGTAAATATTATTATTTT
1 ATTTTTT-T-AATAATATAATTTT
73320876 ATTATATTTTAATAAT
1 ATT-T-TTTTAATAAT
73320892 TTTTAAATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
22 7 0.21
23 1 0.03
24 20 0.61
25 2 0.06
26 3 0.09
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (22 bp):
ATTTTTTTAATAATATAATTTT
Found at i:73321131 original size:3 final size:3
Alignment explanation
Indices: 73321116--73321163 Score: 62
Period size: 3 Copynumber: 16.0 Consensus size: 3
73321106 TGCAGCAGCA
* *
73321116 AAG AGAG AA- AAG AAG AAG AAG AAG AAA AAG AAG AAG AAG AAG GAG
1 AAG A-AG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
73321161 AAG
1 AAG
73321164 GAGGAGAAAG
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
2 2 0.05
3 34 0.87
4 3 0.08
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:73323755 original size:22 final size:22
Alignment explanation
Indices: 73323730--73323786 Score: 66
Period size: 20 Copynumber: 2.7 Consensus size: 22
73323720 TTAGTCCCAT
*
73323730 TATTTATTTATTTTTGTTTTAA
1 TATTTATTTATTTATGTTTTAA
73323752 TATTTA-TT-TTTATGTTTTAA
1 TATTTATTTATTTATGTTTTAA
*
73323772 -ATGTATTTGATTTAT
1 TATTTATTT-ATTTAT
73323787 TATATTTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
19 4 0.13
20 13 0.43
21 2 0.07
22 11 0.37
ACGTcount: A:0.25, C:0.00, G:0.07, T:0.68
Consensus pattern (22 bp):
TATTTATTTATTTATGTTTTAA
Found at i:73323778 original size:19 final size:19
Alignment explanation
Indices: 73323740--73323779 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
73323730 TATTTATTTA
*
73323740 TTTTTGTTTTAATATTTAT
1 TTTTTGTTTTAATATGTAT
73323759 TTTTATGTTTTAA-ATGTAT
1 TTTT-TGTTTTAATATGTAT
73323778 TT
1 TT
73323780 GATTTATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.23, C:0.00, G:0.07, T:0.70
Consensus pattern (19 bp):
TTTTTGTTTTAATATGTAT
Found at i:73328036 original size:15 final size:16
Alignment explanation
Indices: 73328009--73328038 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
73327999 AATAGAAAAA
73328009 AATACATAAAATTTTT
1 AATACATAAAATTTTT
73328025 AATACA-AAAATTTT
1 AATACATAAAATTTT
73328039 CATTCATAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (16 bp):
AATACATAAAATTTTT
Found at i:73328801 original size:23 final size:22
Alignment explanation
Indices: 73328760--73328818 Score: 64
Period size: 23 Copynumber: 2.5 Consensus size: 22
73328750 ATTTAAAAAT
73328760 TATTAAAATATAATAAAATAATAA
1 TATTAAAA-A-AATAAAATAATAA
* * *
73328784 TATTTTAAAAAATAAAATTATAT
1 TA-TTAAAAAAATAAAATAATAA
73328807 TATTAAAAAAAT
1 TATTAAAAAAAT
73328819 GGGTCACGCC
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
22 9 0.30
23 13 0.43
24 3 0.10
25 5 0.17
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (22 bp):
TATTAAAAAAATAAAATAATAA
Found at i:73329857 original size:32 final size:32
Alignment explanation
Indices: 73329796--73329857 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
73329786 AAAAATGGAA
*
73329796 GATTTCTTCCCATCAATGCAAAAGTATTTGGT
1 GATTTCTTCCCATCAATGCAAAACTATTTGGT
* *
73329828 GATTTCTTCCTATTAAT-CAAAACTAATTTG
1 GATTTCTTCCCATCAATGCAAAACT-ATTTG
73329858 ACTTATTTGC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
31 6 0.23
32 20 0.77
ACGTcount: A:0.31, C:0.18, G:0.11, T:0.40
Consensus pattern (32 bp):
GATTTCTTCCCATCAATGCAAAACTATTTGGT
Found at i:73330736 original size:72 final size:72
Alignment explanation
Indices: 73330606--73330775 Score: 159
Period size: 72 Copynumber: 2.4 Consensus size: 72
73330596 CTTTGGGGGC
* * * *
73330606 AACATAAATTATCATATTTTTAGATGTTTAAAGTGGAGGTTAAAACAAAATTTGAAAATATT-TA
1 AACAAAAATTATCATATTTTTAGATATTTAAAGTGGAGGTTAAAACAAAACTTGAAAAT-TTAGA
*
73330670 AGGGGCTA
65 AGGGGCAA
* * ** **
73330678 AATAAAAATTATCATGTTTTTAGATATTTATTGT-GA-GTTAAAATGAAACTTGACAAAATTTAG
1 AACAAAAATTATCATATTTTTAGATATTTAAAGTGGAGGTTAAAACAAAACTTG--AAAATTTAG
73330741 AAGGGGCAA
64 AAGGGGCAA
** *
73330750 AACATGAATTATCA-CTTTTTAGATAT
1 AACAAAAATTATCATATTTTTAGATAT
73330776 ATAATATAGA
Statistics
Matches: 80, Mismatches: 15, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
70 13 0.16
71 15 0.19
72 52 0.65
ACGTcount: A:0.42, C:0.06, G:0.15, T:0.36
Consensus pattern (72 bp):
AACAAAAATTATCATATTTTTAGATATTTAAAGTGGAGGTTAAAACAAAACTTGAAAATTTAGAA
GGGGCAA
Found at i:73332243 original size:19 final size:20
Alignment explanation
Indices: 73332181--73332255 Score: 66
Period size: 20 Copynumber: 3.8 Consensus size: 20
73332171 TTGAATTTTA
*
73332181 ATAAAAGAA-TATTAAAAAT-
1 ATAAAA-AATTATAAAAAATC
* *
73332200 ATTAAAAAAATATAAAAAATT
1 A-TAAAAAATTATAAAAAATC
**
73332221 ATAAAATTTTATAAAAAA-C
1 ATAAAAAATTATAAAAAATC
73332240 ATAAAAAATTATAAAA
1 ATAAAAAATTATAAAA
73332256 TGCATAAAAA
Statistics
Matches: 46, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
19 17 0.37
20 28 0.61
21 1 0.02
ACGTcount: A:0.69, C:0.01, G:0.01, T:0.28
Consensus pattern (20 bp):
ATAAAAAATTATAAAAAATC
Found at i:73332261 original size:19 final size:19
Alignment explanation
Indices: 73332202--73332265 Score: 65
Period size: 19 Copynumber: 3.3 Consensus size: 19
73332192 TTAAAAATAT
* *
73332202 TAAAAAAATATAAAAAATTA
1 TAAAAAATTATAAAAAA-CA
**
73332222 TAAAATTTTATAAAAAACA
1 TAAAAAATTATAAAAAACA
**
73332241 TAAAAAATTATAAAATGCA
1 TAAAAAATTATAAAAAACA
73332260 TAAAAA
1 TAAAAA
73332266 GACCCTTTAA
Statistics
Matches: 36, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
19 22 0.61
20 14 0.39
ACGTcount: A:0.69, C:0.03, G:0.02, T:0.27
Consensus pattern (19 bp):
TAAAAAATTATAAAAAACA
Found at i:73332265 original size:29 final size:28
Alignment explanation
Indices: 73332202--73332265 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 28
73332192 TTAAAAATAT
* **
73332202 TAAAAAAATATAAAAAATTATAAAATTT
1 TAAAAAAACATAAAAAATTATAAAATCA
73332230 TATAAAAAACATAAAAAATTATAAAATGCA
1 TA-AAAAAACATAAAAAATTATAAAAT-CA
73332260 TAAAAA
1 TAAAAA
73332266 GACCCTTTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
28 2 0.06
29 27 0.87
30 2 0.06
ACGTcount: A:0.69, C:0.03, G:0.02, T:0.27
Consensus pattern (28 bp):
TAAAAAAACATAAAAAATTATAAAATCA
Found at i:73332545 original size:12 final size:12
Alignment explanation
Indices: 73332528--73332552 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
73332518 TTTCTATATA
73332528 TTTTATAATTTT
1 TTTTATAATTTT
73332540 TTTTATAATTTT
1 TTTTATAATTTT
73332552 T
1 T
73332553 AATAAATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTTATAATTTT
Found at i:73332562 original size:19 final size:19
Alignment explanation
Indices: 73332527--73332611 Score: 50
Period size: 20 Copynumber: 4.4 Consensus size: 19
73332517 ATTTCTATAT
*
73332527 ATTTTATAATTTTTTTTATAA
1 ATTTTATAA--TTTTTAATAA
* *
73332548 TTTTTAATAAATTTTAAGT-A
1 ATTTT-ATAATTTTTAA-TAA
* *
73332568 TTTTTAT-ATTTTTATTAAA
1 ATTTTATAATTTTTAAT-AA
*
73332587 ATTTAATAATTTTT-ATAA
1 ATTTTATAATTTTTAATAA
73332605 ATTTTAT
1 ATTTTAT
73332612 TAGTTTTTTT
Statistics
Matches: 50, Mismatches: 9, Indels: 13
0.69 0.12 0.18
Matches are distributed among these distances:
17 1 0.02
18 14 0.28
19 9 0.18
20 17 0.34
21 5 0.10
22 4 0.08
ACGTcount: A:0.36, C:0.00, G:0.01, T:0.62
Consensus pattern (19 bp):
ATTTTATAATTTTTAATAA
Found at i:73332611 original size:29 final size:29
Alignment explanation
Indices: 73332539--73332613 Score: 100
Period size: 28 Copynumber: 2.6 Consensus size: 29
73332529 TTTATAATTT
* *
73332539 TTTTTATAATTTTTAATAAATTTTAAGTA
1 TTTTTATAATTTTTATTAAAATTTAAGTA
73332568 TTTTTAT-ATTTTTATTAAAATTTAA-TAA
1 TTTTTATAATTTTTATTAAAATTTAAGT-A
*
73332596 TTTTTATAAATTTTATTA
1 TTTTTATAATTTTTATTA
73332614 GTTTTTTTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
27 1 0.02
28 24 0.59
29 16 0.39
ACGTcount: A:0.37, C:0.00, G:0.01, T:0.61
Consensus pattern (29 bp):
TTTTTATAATTTTTATTAAAATTTAAGTA
Found at i:73338254 original size:43 final size:43
Alignment explanation
Indices: 73338206--73338330 Score: 130
Period size: 43 Copynumber: 2.9 Consensus size: 43
73338196 ATCAAGATGA
*
73338206 GATTACATGTAAAACCATGTCTGGGATATTGGCATTGTATTGT
1 GATTACATGTAAGACCATGTCTGGGATATTGGCATTGTATTGT
* * ** * *
73338249 GATTACGTGTAAGACCACGTCTGGGACGTTGGCATCGATACATGT
1 GATTACATGTAAGACCATGTCTGGGATATTGGCATTG-TA-TTGT
* *
73338294 --TAACATGTAAGACCATATCTGGGATA-TGGCATTGTAT
1 GATTACATGTAAGACCATGTCTGGGATATTGGCATTGTAT
73338331 GAGCTCTATC
Statistics
Matches: 65, Mismatches: 15, Indels: 7
0.75 0.17 0.08
Matches are distributed among these distances:
41 2 0.03
42 7 0.11
43 51 0.78
44 2 0.03
45 3 0.05
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTGGGATATTGGCATTGTATTGT
Found at i:73340037 original size:16 final size:16
Alignment explanation
Indices: 73340016--73340047 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
73340006 GCCCAATAAC
*
73340016 CTAAACTACCAGCCCA
1 CTAAACTAACAGCCCA
73340032 CTAAACTAACAGCCCA
1 CTAAACTAACAGCCCA
73340048 TTACACAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.41, G:0.06, T:0.12
Consensus pattern (16 bp):
CTAAACTAACAGCCCA
Found at i:73341243 original size:20 final size:20
Alignment explanation
Indices: 73341209--73341255 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
73341199 ATATTGTTAC
73341209 TATTATTTTTATTAATA-TAT
1 TATTATTTTTATTAA-AGTAT
73341229 TAATTATTTTT-TTAAAGTAT
1 T-ATTATTTTTATTAAAGTAT
73341249 TATTATT
1 TATTATT
73341256 ACTAATGATT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
19 7 0.28
20 9 0.36
21 9 0.36
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (20 bp):
TATTATTTTTATTAAAGTAT
Found at i:73341252 original size:23 final size:21
Alignment explanation
Indices: 73341210--73341255 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
73341200 TATTGTTACT
73341210 ATTATTTTTATTAATATATTA
1 ATTATTTTTATTAATATATTA
73341231 ATTATTTTT-TTAA-AGTATT-
1 ATTATTTTTATTAATA-TATTA
73341250 ATTATT
1 ATTATT
73341256 ACTAATGATT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.29
20 8 0.33
21 9 0.38
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (21 bp):
ATTATTTTTATTAATATATTA
Found at i:73341318 original size:13 final size:14
Alignment explanation
Indices: 73341294--73341324 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
73341284 ATTATTATCA
73341294 ATATTAATATATGT
1 ATATTAATATATGT
73341308 ATATT-ATATATGT
1 ATATTAATATATGT
73341321 ATAT
1 ATAT
73341325 ATTCATACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (14 bp):
ATATTAATATATGT
Found at i:73341413 original size:20 final size:20
Alignment explanation
Indices: 73341390--73341431 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
73341380 ATCATATTTG
*
73341390 TTTTTATA-TATTCATTATTA
1 TTTTTATATTATT-AATATTA
73341410 TTTTTATATTATTAATATTA
1 TTTTTATATTATTAATATTA
73341430 TT
1 TT
73341432 AGATGTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 16 0.80
21 4 0.20
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (20 bp):
TTTTTATATTATTAATATTA
Found at i:73341605 original size:21 final size:20
Alignment explanation
Indices: 73341572--73341614 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
73341562 TTTTATATAC
73341572 TATTACATGTATACTTCTAA
1 TATTACATGTATACTTCTAA
* *
73341592 TATTATATCGTATATTTCTAA
1 TATTACAT-GTATACTTCTAA
73341613 TA
1 TA
73341615 CCATCATTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.35, C:0.12, G:0.05, T:0.49
Consensus pattern (20 bp):
TATTACATGTATACTTCTAA
Found at i:73354308 original size:143 final size:146
Alignment explanation
Indices: 73353920--73354412 Score: 601
Period size: 143 Copynumber: 3.4 Consensus size: 146
73353910 CTTTCCAAGG
73353920 AAAATTGACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGTATTTTAATTCATG
1 AAAATTGACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGTATTTTAATTCATG
* * **
73353985 -T-TTTCAAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCAGGTCACACGCTGAGGTAT
66 TTGTTTC-AAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTAT
73354048 TTTTAGTTTATGTTTCA
130 TTTTAGTTTATGTTTCA
* * *
73354065 AAAATTGACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCATGCTGAGGTATTTTAATTCTTT
1 AAAATTGACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGTATTTTAATTCATG
* **
73354130 TTGTTTCAAAAATCAGCTCATATTGCGAGGGGTGAGTTGAGCCTC-GG-GGCACGCTGAGGTATT
66 TTGTTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATT
73354193 TTTAGTTTATGTTT-A
131 TTTAGTTTATGTTTCA
* * * * *
73354208 GAAAA-T-ACTCATATTGCGAAAAGTGAGCCAAGCCTTAGGTCACGCTGAGGTATTTTTAATTCC
1 -AAAATTGACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGTA-TTTTAATTCA
* * *
73354271 TGTTGTTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAG--ATACGTTGAGGTA
64 TGTTGTTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTA
* * * *
73354334 ATTTCAATTTATG-TTCC
129 TTTTTAGTTTATGTTTCA
** * ** * * * *
73354351 AAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCGGGGCATGCTGAAGTATTTTCAATT
1 AAAATTGACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGTATTTT-AATT
73354413 TCTGCTTTTA
Statistics
Matches: 301, Mismatches: 38, Indels: 19
0.84 0.11 0.05
Matches are distributed among these distances:
142 47 0.16
143 80 0.27
144 72 0.24
145 64 0.21
146 34 0.11
147 4 0.01
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (146 bp):
AAAATTGACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGTATTTTAATTCATG
TTGTTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATT
TTTAGTTTATGTTTCA
Found at i:73354316 original size:74 final size:71
Alignment explanation
Indices: 73353928--73354413 Score: 475
Period size: 73 Copynumber: 6.8 Consensus size: 71
73353918 GGAAAATTGA
** *
73353928 CTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGTA-TTTTAATTCATGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTTAATTTATG-TTTC-A
*
73353992 AAAATCAA
64 AAAATCAG
* ** *
73354000 CTCATATTGTGAGAAATGAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTTAGTTTATGTTTCA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT--CACGCTGAGGTATTTTTAATTTATGTTTCA
*
73354065 AAAAT-TG
64 AAAATCAG
** * *
73354072 ACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCATGCTGAGGTA-TTTTAATTCTTTTTGTTT
1 -CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTTAA---TTTATGTTT
73354136 CAAAAATCAG
62 CAAAAATCAG
* * * *
73354146 CTCATATTGCGAGGGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTTATGTTT-AGA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTTAATTTATGTTTCA-A
73354210 AAAT-A-
65 AAATCAG
* * *** * *
73354215 CTCATATTGCGAAAAGTGAGCCAAGCCTTAGGTCACGCTGAGGTATTTTTAATTCCTGTTGTTTC
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTTAATT--T-ATGTTTC
73354280 AAAAATCAG
63 AAAAATCAG
* * * * *
73354289 CTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAT-ACGTTGAGGTAATTTCAATTTATG-TTCCA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTC-AGGTCACGCTGAGGTATTTTTAATTTATGTTTCAA
*
73354352 AAATCAA
65 AAATCAG
* * * * * *
73354359 CTCACATTGCGAGAGGTGAGTTGAGCCTCGGGGCATGCTGAAGTATTTTCAATTT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTTAATTT
73354414 CTGCTTTTAA
Statistics
Matches: 338, Mismatches: 58, Indels: 38
0.78 0.13 0.09
Matches are distributed among these distances:
69 45 0.13
70 62 0.18
71 27 0.08
72 39 0.12
73 90 0.27
74 62 0.18
75 13 0.04
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.33
Consensus pattern (71 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTTAATTTATGTTTCAAA
AATCAG
Found at i:73354386 original size:213 final size:215
Alignment explanation
Indices: 73353927--73354412 Score: 542
Period size: 213 Copynumber: 2.3 Consensus size: 215
73353917 AGGAAAATTG
** * *
73353927 ACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGTA-TTTTAATTCATGTTTTCA
1 ACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAATTCATGTTTTCA
* *** *
73353991 AAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTTAGTT
66 AAAAAT-AACTCATATTGCGAGAAATGAGCCAAGCCTCAGGT-ACACGCTGAGGTATTTTTAATT
* * *
73354056 TATGTTTCAAAAATTGACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCATGCTGAGGTATTT
129 TATGTTTCAAAAATAGACTCATATTGCGAGAGGTGAGTCAAGCCTCAGATCACGCTGAGGTATTT
* *
73354121 TAATTCTTTTTGTTTCAAAAATCA
194 CAA-T-TTTATGTTTCAAAAATCA
* * * *
73354145 GCTCATATTGCGAGGGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTTATG-TTT-A
1 ACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAATTCATGTTTTCA
* *
73354208 GAAAAT-ACTCATATTGCGA-AAAGTGAGCCAAGCCTTAGGT-CACGCTGAGGTATTTTTAATTC
66 AAAAATAACTCATATTGCGAGAAA-TGAGCCAAGCCTCAGGTACACGCTGAGGTATTTTTAATT-
* ** *
73354270 CTGTTGTTTCAAAAATCAG-CTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAT-ACGTTGAGGT
129 -T-ATGTTTCAAAAAT-AGACTCATATTGCGAGAGGTGAGTCAAGCCTC-AGATCACGCTGAGGT
*
73354333 AATTTCAA-TTTATG-TTCCAAAATCA
190 -ATTTCAATTTTATGTTTCAAAAATCA
* * * *
73354358 ACTCACATTGCGAGAGGTGAGTTGAGCCTCGGGGCATGCTGAAGTATTTTCAATT
1 ACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAATT
73354413 TCTGCTTTTA
Statistics
Matches: 228, Mismatches: 32, Indels: 21
0.81 0.11 0.07
Matches are distributed among these distances:
213 78 0.34
214 8 0.04
215 26 0.11
216 47 0.21
217 16 0.07
218 43 0.19
219 10 0.04
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (215 bp):
ACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAATTCATGTTTTCA
AAAAATAACTCATATTGCGAGAAATGAGCCAAGCCTCAGGTACACGCTGAGGTATTTTTAATTTA
TGTTTCAAAAATAGACTCATATTGCGAGAGGTGAGTCAAGCCTCAGATCACGCTGAGGTATTTCA
ATTTTATGTTTCAAAAATCA
Found at i:73354760 original size:73 final size:72
Alignment explanation
Indices: 73354580--73354763 Score: 217
Period size: 72 Copynumber: 2.5 Consensus size: 72
73354570 CTACTTTTTC
* * * * *
73354580 AAAATCAGCTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTT
***
73354645 GTGTTTT
66 GTGTCAA
** *
73354652 AACTTCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT-T
73354717 AT-TGTCAA
65 -TGTGTCAA
* * *
73354725 AAAATCAACTCATATTGCGAAAAGTAAGTTGAGCCTCAG
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
73354764 TTCACATGCT
Statistics
Matches: 93, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
72 55 0.59
73 37 0.40
74 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.30
Consensus pattern (72 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTT
GTGTCAA
Found at i:73355558 original size:16 final size:16
Alignment explanation
Indices: 73355537--73355568 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
73355527 GCCCAATAAC
*
73355537 CTAAACTACCAGCCCA
1 CTAAACTAACAGCCCA
73355553 CTAAACTAACAGCCCA
1 CTAAACTAACAGCCCA
73355569 TTACACAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.41, G:0.06, T:0.12
Consensus pattern (16 bp):
CTAAACTAACAGCCCA
Found at i:73356781 original size:20 final size:20
Alignment explanation
Indices: 73356747--73356793 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
73356737 ATATTGTTAC
73356747 TATTATTTTTATTAATA-TAT
1 TATTATTTTTATTAA-AGTAT
73356767 TAATTATTTTT-TTAAAGTAT
1 T-ATTATTTTTATTAAAGTAT
73356787 TATTATT
1 TATTATT
73356794 ACTAATGATT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
19 7 0.28
20 9 0.36
21 9 0.36
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (20 bp):
TATTATTTTTATTAAAGTAT
Found at i:73356790 original size:23 final size:21
Alignment explanation
Indices: 73356748--73356793 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
73356738 TATTGTTACT
73356748 ATTATTTTTATTAATATATTA
1 ATTATTTTTATTAATATATTA
73356769 ATTATTTTT-TTAA-AGTATT-
1 ATTATTTTTATTAATA-TATTA
73356788 ATTATT
1 ATTATT
73356794 ACTAATGATT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.29
20 8 0.33
21 9 0.38
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (21 bp):
ATTATTTTTATTAATATATTA
Found at i:73356959 original size:12 final size:12
Alignment explanation
Indices: 73356944--73356975 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
73356934 TATATTTCAT
*
73356944 TATTATTTTTAA
1 TATTATTATTAA
73356956 TATTATTATTAA
1 TATTATTATTAA
73356968 TATTATTA
1 TATTATTA
73356976 GATGTTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
TATTATTATTAA
Found at i:73357047 original size:26 final size:24
Alignment explanation
Indices: 73357015--73357110 Score: 86
Period size: 26 Copynumber: 3.7 Consensus size: 24
73357005 TGTAGATGTC
*
73357015 TTAATATTATATTATATGTATTTTT
1 TTAATATTATATTATAT-AATTTTT
*
73357040 TTATATATGT-TATGTATATAAGTTTT
1 TTA-ATAT-TATAT-TATATAATTTTT
*
73357066 TTAATATTATATTTTATACATATTTT
1 TTAATATTATATTATATA-AT-TTTT
73357092 TTAATATTATTAGTTATAT
1 TTAATATTA-TA-TTATAT
73357111 TTTTTATATA
Statistics
Matches: 58, Mismatches: 5, Indels: 13
0.76 0.07 0.17
Matches are distributed among these distances:
24 6 0.10
25 11 0.19
26 28 0.48
27 8 0.14
28 5 0.09
ACGTcount: A:0.33, C:0.01, G:0.05, T:0.60
Consensus pattern (24 bp):
TTAATATTATATTATATAATTTTT
Found at i:73357155 original size:21 final size:20
Alignment explanation
Indices: 73357122--73357164 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
73357112 TTTTATATAC
73357122 TATTACATGTATACTTCTAA
1 TATTACATGTATACTTCTAA
* *
73357142 TATTATATCGTATATTTCTAA
1 TATTACAT-GTATACTTCTAA
73357163 TA
1 TA
73357165 CCATCATTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.35, C:0.12, G:0.05, T:0.49
Consensus pattern (20 bp):
TATTACATGTATACTTCTAA
Found at i:73360465 original size:29 final size:30
Alignment explanation
Indices: 73360422--73360485 Score: 87
Period size: 29 Copynumber: 2.2 Consensus size: 30
73360412 TTAAAAAATT
*
73360422 ATTTTATTTAATTA-TAATATATATTT-TAA
1 ATTTTATTTAATTATTAAAAT-TATTTATAA
*
73360451 ATTTTATTTATTTATTAAAATTATTTATAA
1 ATTTTATTTAATTATTAAAATTATTTATAA
73360481 ATTTT
1 ATTTT
73360486 TACAAATATA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
29 18 0.58
30 13 0.42
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (30 bp):
ATTTTATTTAATTATTAAAATTATTTATAA
Found at i:73361079 original size:12 final size:12
Alignment explanation
Indices: 73361062--73361087 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
73361052 ATGTTCATAC
73361062 ATAATCATCAAA
1 ATAATCATCAAA
73361074 ATAATCATCAAA
1 ATAATCATCAAA
73361086 AT
1 AT
73361088 GGGTTGTAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (12 bp):
ATAATCATCAAA
Found at i:73365385 original size:23 final size:23
Alignment explanation
Indices: 73365359--73365411 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
73365349 ATAAGAAAAT
* * *
73365359 AAATTTTAAAAAAATCAAAAGCA
1 AAATTTCAAAAAAATAAAAAGAA
*
73365382 AAATTTCAAAAAAATAAAAATAA
1 AAATTTCAAAAAAATAAAAAGAA
73365405 AAATTTC
1 AAATTTC
73365412 CAAGGTTAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.66, C:0.08, G:0.02, T:0.25
Consensus pattern (23 bp):
AAATTTCAAAAAAATAAAAAGAA
Found at i:73365632 original size:21 final size:22
Alignment explanation
Indices: 73365606--73365655 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 22
73365596 AAAATTAATA
73365606 TTTTTTTTCAAATGTTTTTT-C
1 TTTTTTTTCAAATGTTTTTTAC
* *
73365627 TTTTTTTTTAAATTTTTTTTAC
1 TTTTTTTTCAAATGTTTTTTAC
*
73365649 ATTTTTT
1 TTTTTTT
73365656 GCAATTATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
21 18 0.72
22 7 0.28
ACGTcount: A:0.16, C:0.06, G:0.02, T:0.76
Consensus pattern (22 bp):
TTTTTTTTCAAATGTTTTTTAC
Found at i:73365642 original size:11 final size:11
Alignment explanation
Indices: 73365600--73365655 Score: 51
Period size: 11 Copynumber: 5.0 Consensus size: 11
73365590 ATTTTTAAAA
73365600 TTAATATTTTTT
1 TTAA-ATTTTTT
*
73365612 TTCAAATGTTTT
1 TT-AAATTTTTT
**
73365624 TT-CTTTTTTT
1 TTAAATTTTTT
73365634 TTAAATTTTTT
1 TTAAATTTTTT
*
73365645 TTACATTTTTT
1 TTAAATTTTTT
73365656 GCAATTATTT
Statistics
Matches: 35, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
10 7 0.20
11 16 0.46
12 10 0.29
13 2 0.06
ACGTcount: A:0.20, C:0.05, G:0.02, T:0.73
Consensus pattern (11 bp):
TTAAATTTTTT
Found at i:73368411 original size:20 final size:20
Alignment explanation
Indices: 73368358--73368411 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
73368348 AGGGGCACAC
*
73368358 GCCCGTGTGGCCTCGAACAT
1 GCCCGTGTGGCCTGGAACAT
*
73368378 GCCCATGTGGCCTGGAACAT
1 GCCCGTGTGGCCTGGAACAT
73368398 GCCCGTGTGGCCTG
1 GCCCGTGTGGCCTG
73368412 CCCGTGGGGC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.13, C:0.33, G:0.33, T:0.20
Consensus pattern (20 bp):
GCCCGTGTGGCCTGGAACAT
Found at i:73375742 original size:20 final size:20
Alignment explanation
Indices: 73375717--73375761 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
73375707 GGGGCACACA
73375717 CCCGTGTGGCCTAGAACATG
1 CCCGTGTGGCCTAGAACATG
*
73375737 CCCGTGTGGCCTGGAACATG
1 CCCGTGTGGCCTAGAACATG
73375757 CCCGT
1 CCCGT
73375762 ATGACCTGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.16, C:0.33, G:0.31, T:0.20
Consensus pattern (20 bp):
CCCGTGTGGCCTAGAACATG
Found at i:73375769 original size:20 final size:20
Alignment explanation
Indices: 73375730--73375769 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
73375720 GTGTGGCCTA
* *
73375730 GAACATGCCCGTGTGGCCTG
1 GAACATGCCCGTATGACCTG
73375750 GAACATGCCCGTATGACCTG
1 GAACATGCCCGTATGACCTG
73375770 CCCGTGGGGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.20
Consensus pattern (20 bp):
GAACATGCCCGTATGACCTG
Found at i:73377941 original size:46 final size:46
Alignment explanation
Indices: 73377892--73378066 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
73377882 GGTTGAGCAT
*
73377892 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
* * *
73377938 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCAC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--C
*
73377985 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
* *
73378031 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73378067 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 28 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
Found at i:73380439 original size:17 final size:17
Alignment explanation
Indices: 73380419--73380461 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
73380409 TTCTTTCCCT
* *
73380419 TTTTCTTTCTTTCTTTC
1 TTTTATTTCTGTCTTTC
*
73380436 TTTTATTTCTGTCTTTTA
1 TTTTATTTCTGTC-TTTC
73380454 TTTTATTT
1 TTTTATTT
73380462 AATTACTTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 11 0.50
18 11 0.50
ACGTcount: A:0.07, C:0.14, G:0.02, T:0.77
Consensus pattern (17 bp):
TTTTATTTCTGTCTTTC
Found at i:73385149 original size:14 final size:15
Alignment explanation
Indices: 73385130--73385164 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
73385120 CTCTTACTCT
73385130 AATATTGTATA-AAA
1 AATATTGTATATAAA
*
73385144 AATATTTTATATAAA
1 AATATTGTATATAAA
73385159 AATATT
1 AATATT
73385165 TAATACCTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 10 0.53
15 9 0.47
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (15 bp):
AATATTGTATATAAA
Found at i:73385487 original size:16 final size:17
Alignment explanation
Indices: 73385466--73385498 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
73385456 AAAGCAAAGG
73385466 AAGAAAAA-AAAGAAAA
1 AAGAAAAAGAAAGAAAA
73385482 AAGAAAAAGAAAGAAAA
1 AAGAAAAAGAAAGAAAA
73385499 GGCTATGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (17 bp):
AAGAAAAAGAAAGAAAA
Found at i:73391614 original size:96 final size:97
Alignment explanation
Indices: 73391440--73391629 Score: 292
Period size: 96 Copynumber: 2.0 Consensus size: 97
73391430 TCTGCCCAAT
* * *
73391440 TTGTAGCAAATCGATGGGAGATATGGCGGTAAGAAAATTATTTTTAAAAGCATATTACTGTTTTA
1 TTGTAGAAAATCGATGGGAGATATGGCGGTAAGAAAATTACTTTTAAAAGCATACTACTGTTTTA
* *
73391505 AGTTATGATTACATATAAAATTGTTTTAGCAC
66 AGTTATGACTACATACAAAATTGTTTTAGCAC
* *
73391537 TTGTAGAAAATTGATGGGAGATATGGCGGTAAGAAAATT-CTTTTAAAGGCATACTACTGTTTTA
1 TTGTAGAAAATCGATGGGAGATATGGCGGTAAGAAAATTACTTTTAAAAGCATACTACTGTTTTA
* *
73391601 AGTTATGACTACATGCAAGATTGTTTTAG
66 AGTTATGACTACATACAAAATTGTTTTAG
73391630 GGGATAGGCA
Statistics
Matches: 84, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
96 47 0.56
97 37 0.44
ACGTcount: A:0.35, C:0.08, G:0.21, T:0.36
Consensus pattern (97 bp):
TTGTAGAAAATCGATGGGAGATATGGCGGTAAGAAAATTACTTTTAAAAGCATACTACTGTTTTA
AGTTATGACTACATACAAAATTGTTTTAGCAC
Found at i:73393237 original size:17 final size:19
Alignment explanation
Indices: 73393215--73393261 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
73393205 TTTAATTGTT
73393215 ATCATATTTA-AAAT-AAA
1 ATCATATTTATAAATAAAA
*
73393232 ATCATATTTATAGATAAAA
1 ATCATATTTATAAATAAAA
*
73393251 ATTATATTTAT
1 ATCATATTTAT
73393262 TCAATTAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
17 10 0.38
18 3 0.12
19 13 0.50
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (19 bp):
ATCATATTTATAAATAAAA
Found at i:73397526 original size:16 final size:16
Alignment explanation
Indices: 73397500--73397536 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
73397490 TACAATATGA
*
73397500 ATAATAAAATTAAAAT
1 ATAAAAAAATTAAAAT
*
73397516 GTAAAAAAATTAAAAT
1 ATAAAAAAATTAAAAT
73397532 ATAAA
1 ATAAA
73397537 TTTGGTTGAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (16 bp):
ATAAAAAAATTAAAAT
Found at i:73399092 original size:37 final size:38
Alignment explanation
Indices: 73399031--73399110 Score: 92
Period size: 37 Copynumber: 2.1 Consensus size: 38
73399021 AATTTGAAGT
* * * **
73399031 AGTAAATTGATACCTAGTGTCTCATTGGTTAAA-CCGA
1 AGTAAATTGATACCCAGTGCCTCATCGAATAAATCCGA
73399068 AGTAAATTGGA-ACCCAGTGCCTCATCGAATAAATCCGA
1 AGTAAATT-GATACCCAGTGCCTCATCGAATAAATCCGA
73399106 AGTAA
1 AGTAA
73399111 TAAATTGACA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
37 25 0.69
38 11 0.31
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (38 bp):
AGTAAATTGATACCCAGTGCCTCATCGAATAAATCCGA
Found at i:73399992 original size:4 final size:4
Alignment explanation
Indices: 73399983--73400049 Score: 73
Period size: 4 Copynumber: 16.0 Consensus size: 4
73399973 TGTCTTTCTC
* *
73399983 CTTT CTTT CTTT CTTTT CTTT CTTT C-TT CTTT CTGTTT CGTCT CTAT
1 CTTT CTTT CTTT C-TTT CTTT CTTT CTTT CTTT C--TTT C-TTT CTTT
73400030 CTTT CTTT CTTT CTTT CTTT
1 CTTT CTTT CTTT CTTT CTTT
73400050 TTATTAATTA
Statistics
Matches: 56, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
3 3 0.05
4 41 0.73
5 8 0.14
6 4 0.07
ACGTcount: A:0.01, C:0.25, G:0.03, T:0.70
Consensus pattern (4 bp):
CTTT
Found at i:73404306 original size:68 final size:68
Alignment explanation
Indices: 73404216--73404361 Score: 274
Period size: 68 Copynumber: 2.1 Consensus size: 68
73404206 TATGAATGCA
*
73404216 AATTAAAATACTTTGGTGAAGAAAACTATTTTGATTTGAGGAGGTGATTAAAAACTAAGATTTTA
1 AATTAAAATACTTTGGTGAAGAAAAATATTTTGATTTGAGGAGGTGATTAAAAACTAAGATTTTA
73404281 ACT
66 ACT
73404284 AATTAAAATACTTTGGTGAAGAAAAATATTTTGATTTGAGGAGGTGATTAAAAACTAAGATTTTA
1 AATTAAAATACTTTGGTGAAGAAAAATATTTTGATTTGAGGAGGTGATTAAAAACTAAGATTTTA
73404349 ACT
66 ACT
*
73404352 AAGTAAAATA
1 AATTAAAATA
73404362 AATAGAAAGA
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 76 1.00
ACGTcount: A:0.44, C:0.05, G:0.17, T:0.34
Consensus pattern (68 bp):
AATTAAAATACTTTGGTGAAGAAAAATATTTTGATTTGAGGAGGTGATTAAAAACTAAGATTTTA
ACT
Found at i:73407536 original size:5 final size:5
Alignment explanation
Indices: 73407526--73407557 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
73407516 TTGTGTGTTC
73407526 TTTAT TTTA- TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
73407558 TCACAAATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:73407540 original size:9 final size:9
Alignment explanation
Indices: 73407526--73407556 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
73407516 TTGTGTGTTC
73407526 TTTATTTTA
1 TTTATTTTA
73407535 TTTATTTTA
1 TTTATTTTA
73407544 TTTTATTTTA
1 -TTTATTTTA
73407554 TTT
1 TTT
73407557 TTCACAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTATTTTA
Found at i:73413238 original size:41 final size:45
Alignment explanation
Indices: 73413172--73413386 Score: 163
Period size: 45 Copynumber: 4.9 Consensus size: 45
73413162 CTCATATTGG
* * * *
73413172 TGCCACTGTCCCAGACAGGGACTTACAC-TAATCA-A-ATA-CGA
1 TGCCAATGTCCCAGACATGGTCTTACACGTAACCACATATATCGA
* * *
73413213 TGCCGATGTCCTAGACATGGTCTTACTCGTAACCACATATATCGA
1 TGCCAATGTCCCAGACATGGTCTTACACGTAACCACATATATCGA
* * *
73413258 TGCCAATGTCCCAGA-AGTGGTCTTACACGAAAACAAATATATC-A
1 TGCCAATGTCCCAGACA-TGGTCTTACACGTAACCACATATATCGA
* * * * * * **
73413302 GTACCAACGTCCCAAACGTGGTCTTACACGAAAACACATATATAAA
1 -TGCCAATGTCCCAGACATGGTCTTACACGTAACCACATATATCGA
* * * * *
73413348 TGCCAACGTCCTAGACGTGGTCTTACACGAAAACACATA
1 TGCCAATGTCCCAGACATGGTCTTACACGTAACCACATA
73413387 ACATGATCCT
Statistics
Matches: 144, Mismatches: 22, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
41 22 0.15
42 5 0.03
43 1 0.01
44 5 0.03
45 110 0.76
46 1 0.01
ACGTcount: A:0.35, C:0.27, G:0.16, T:0.22
Consensus pattern (45 bp):
TGCCAATGTCCCAGACATGGTCTTACACGTAACCACATATATCGA
Found at i:73413267 original size:45 final size:45
Alignment explanation
Indices: 73413210--73413386 Score: 187
Period size: 45 Copynumber: 3.9 Consensus size: 45
73413200 TAATCAAATA
* * * * * *
73413210 CGATGCCGATGTCCTAGACATGGTCTTACTCGTAACCACATATAT
1 CGATGCCAACGTCCCAGACATGGTCTTACACGAAAACACATATAT
* *
73413255 CGATGCCAATGTCCCAGA-AGTGGTCTTACACGAAAACAAATATAT
1 CGATGCCAACGTCCCAGACA-TGGTCTTACACGAAAACACATATAT
* * *
73413300 C-AGTACCAACGTCCCAAACGTGGTCTTACACGAAAACACATATAT
1 CGA-TGCCAACGTCCCAGACATGGTCTTACACGAAAACACATATAT
** * *
73413345 AAATGCCAACGTCCTAGACGTGGTCTTACACGAAAACACATA
1 CGATGCCAACGTCCCAGACATGGTCTTACACGAAAACACATA
73413387 ACATGATCCT
Statistics
Matches: 113, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
44 2 0.02
45 110 0.97
46 1 0.01
ACGTcount: A:0.35, C:0.26, G:0.16, T:0.23
Consensus pattern (45 bp):
CGATGCCAACGTCCCAGACATGGTCTTACACGAAAACACATATAT
Found at i:73415983 original size:26 final size:27
Alignment explanation
Indices: 73415954--73416023 Score: 94
Period size: 26 Copynumber: 2.7 Consensus size: 27
73415944 AAACATTAAA
*
73415954 TTAAAT-TTAATATTAA-GATAATCTTT
1 TTAAATATTAA-ATTAATAATAATCTTT
73415980 TT-AATATTAAATTAATAATAATCTTT
1 TTAAATATTAAATTAATAATAATCTTT
73416006 TT-AATATTAAATTAATAA
1 TTAAATATTAAATTAATAA
73416024 AATACTATTA
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
25 8 0.20
26 33 0.80
ACGTcount: A:0.47, C:0.03, G:0.01, T:0.49
Consensus pattern (27 bp):
TTAAATATTAAATTAATAATAATCTTT
Found at i:73416058 original size:37 final size:35
Alignment explanation
Indices: 73416006--73416080 Score: 91
Period size: 37 Copynumber: 2.1 Consensus size: 35
73415996 AATAATCTTT
73416006 TTAATATTAAATTAATA-AAATACTATTAAGATAAGTA
1 TTAATATTAAATTAATATAAA-ACTATTAA-ATAA-TA
*
73416043 TTAA-ATTAAATTTAATATTAAACTATTAAATAATA
1 TTAATATTAAA-TTAATATAAAACTATTAAATAATA
73416078 TTA
1 TTA
73416081 TTTTTGAAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
35 5 0.14
36 10 0.29
37 18 0.51
38 2 0.06
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.41
Consensus pattern (35 bp):
TTAATATTAAATTAATATAAAACTATTAAATAATA
Found at i:73416061 original size:48 final size:47
Alignment explanation
Indices: 73415862--73416064 Score: 150
Period size: 48 Copynumber: 4.3 Consensus size: 47
73415852 ACTTAATCAC
* * *
73415862 TTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAA
1 TTTAATATTAAATTAATA-AA-ATATATTAAGATAAATATTAAATTAAA
* *
73415911 TTTAATATTAAATCTTATTAAAATA-ATGT-AGATAAACATTAAATTAAA
1 TTTAATATTAAA--TTAATAAAATATAT-TAAGATAAATATTAAATTAAA
**** * * *
73415959 TTTAATATTAAGA-TAATCTTTTTAATATTAA-ATTAATAAT-AATCT--T
1 TTTAATATTAA-ATTAAT-AAAAT-ATATTAAGATAAATATTAAAT-TAAA
*
73416005 TTTAATATTAAATTAATAAAATACTATTAAGATAAGTATTAAATTAAA
1 TTTAATATTAAATTAATAAAATA-TATTAAGATAAATATTAAATTAAA
73416053 TTTAATATTAAA
1 TTTAATATTAAA
73416065 CTATTAAATA
Statistics
Matches: 117, Mismatches: 22, Indels: 31
0.69 0.13 0.18
Matches are distributed among these distances:
44 1 0.01
45 8 0.07
46 25 0.21
47 7 0.06
48 51 0.44
49 18 0.15
50 2 0.02
51 5 0.04
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.43
Consensus pattern (47 bp):
TTTAATATTAAATTAATAAAATATATTAAGATAAATATTAAATTAAA
Found at i:73416518 original size:19 final size:19
Alignment explanation
Indices: 73416480--73416519 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
73416470 AAAATATCAT
* *
73416480 ATTAATTTTATTTAATTTG
1 ATTAATTTAATTTAACTTG
*
73416499 ATTAATTTAATTTTACTTG
1 ATTAATTTAATTTAACTTG
73416518 AT
1 AT
73416520 CAAAATTATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.33, C:0.03, G:0.05, T:0.60
Consensus pattern (19 bp):
ATTAATTTAATTTAACTTG
Found at i:73419883 original size:36 final size:38
Alignment explanation
Indices: 73419837--73419916 Score: 101
Period size: 37 Copynumber: 2.2 Consensus size: 38
73419827 GAGAGAGGGT
* *
73419837 TTGTAACTTAAGGTTTG-GGTAGAAACCTTAAGAGAG-
1 TTGTAACTTAAGATTTGAGGCAGAAACCTTAAGAGAGA
* * *
73419873 TTGTATCTTAAGATTTGAGGCATAAATCTTAAGAGAGA
1 TTGTAACTTAAGATTTGAGGCAGAAACCTTAAGAGAGA
73419911 TTGTAA
1 TTGTAA
73419917 GGTTAAACCT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
36 15 0.42
37 16 0.44
38 5 0.14
ACGTcount: A:0.35, C:0.07, G:0.24, T:0.34
Consensus pattern (38 bp):
TTGTAACTTAAGATTTGAGGCAGAAACCTTAAGAGAGA
Found at i:73421103 original size:12 final size:12
Alignment explanation
Indices: 73421086--73421110 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
73421076 TACCAAGGAG
73421086 AAAGATCCTATT
1 AAAGATCCTATT
73421098 AAAGATCCTATT
1 AAAGATCCTATT
73421110 A
1 A
73421111 TTTGCTATGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.16, G:0.08, T:0.32
Consensus pattern (12 bp):
AAAGATCCTATT
Found at i:73423139 original size:51 final size:50
Alignment explanation
Indices: 73423084--73423234 Score: 180
Period size: 51 Copynumber: 3.0 Consensus size: 50
73423074 CACTTGTAGC
* *
73423084 CAAAGCTATCTGGTACGCATAGTAGCTTGCACTTAGTACTACACACGTGA
1 CAAAGTTATCCGGTACGCATAGTAGCTTGCACTTAGTACTACACACGTGA
* * * *
73423134 TCAAAGTTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGA
1 -CAAAGTTATCCGGTACGCATAGTAGCTTGCACTTAGTACTACACACGTGA
* * * *
73423185 CCAA-TTATCCGGTACACGTAGTAG-TCTGTACTTAGTACTACACACGTGA
1 CAAAGTTATCCGGTACGCATAGTAGCT-TGCACTTAGTACTACACACGTGA
73423234 C
1 C
73423235 CTCACAATAG
Statistics
Matches: 86, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
49 38 0.44
50 3 0.03
51 45 0.52
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (50 bp):
CAAAGTTATCCGGTACGCATAGTAGCTTGCACTTAGTACTACACACGTGA
Found at i:73428454 original size:39 final size:40
Alignment explanation
Indices: 73428251--73428473 Score: 229
Period size: 40 Copynumber: 5.6 Consensus size: 40
73428241 TTGAATGCTG
* * * * * *
73428251 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAA-TTACTAAA
* * *
73428291 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGA-TACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGA-ATTACTAAA
* **
73428331 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAATTACTAAA
**
73428371 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAATTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAATTACTAAA
* *
73428411 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAATTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAATTACTAAA
* *
73428450 TCCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
73428474 TGAACGAGGA
Statistics
Matches: 160, Mismatches: 18, Indels: 11
0.85 0.10 0.06
Matches are distributed among these distances:
39 36 0.22
40 114 0.71
41 9 0.06
42 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAATTACTAAA
Found at i:73428493 original size:79 final size:80
Alignment explanation
Indices: 73428326--73428508 Score: 208
Period size: 79 Copynumber: 2.3 Consensus size: 80
73428316 GTGCGAGATA
* ** *
73428326 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAATTACTAAATCCGGGCTAAGTCCCGAAGG
** **
73428391 CATTCGTGCGAATTG
66 CATTCGAACGAAGAG
* * * *
73428406 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAATTACTAAATCCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAATTACTAAATCCGGGCTAAGTCCCGAAGG
* *
73428470 CATTTGAACGAGGAG
66 CATTCGAACGAAGAG
* *
73428485 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
73428509 TACGTGATTT
Statistics
Matches: 85, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
78 14 0.16
79 44 0.52
80 27 0.32
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAATTACTAAATCCGGGCTAAGTCCCGAAGG
CATTCGAACGAAGAG
Found at i:73436309 original size:39 final size:40
Alignment explanation
Indices: 73436106--73436328 Score: 229
Period size: 40 Copynumber: 5.6 Consensus size: 40
73436096 TTGAATGCTG
* * * * * *
73436106 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAA-TTACTAAA
* * *
73436146 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGA-TACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGA-ATTACTAAA
* **
73436186 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAATTACTAAA
**
73436226 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAATTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAATTACTAAA
* *
73436266 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAATTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAATTACTAAA
* *
73436305 TCCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
73436329 TGAACGAGGA
Statistics
Matches: 160, Mismatches: 18, Indels: 11
0.85 0.10 0.06
Matches are distributed among these distances:
39 36 0.22
40 114 0.71
41 9 0.06
42 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAATTACTAAA
Found at i:73436348 original size:79 final size:80
Alignment explanation
Indices: 73436181--73436363 Score: 208
Period size: 79 Copynumber: 2.3 Consensus size: 80
73436171 GTGCGAGATA
* ** *
73436181 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAATTACTAAATCCGGGCTAAGTCCCGAAGG
** **
73436246 CATTCGTGCGAATTG
66 CATTCGAACGAAGAG
* * * *
73436261 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAATTACTAAATCCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAATTACTAAATCCGGGCTAAGTCCCGAAGG
* *
73436325 CATTTGAACGAGGAG
66 CATTCGAACGAAGAG
* *
73436340 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
73436364 TACGTGATTT
Statistics
Matches: 85, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
78 14 0.16
79 44 0.52
80 27 0.32
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAATTACTAAATCCGGGCTAAGTCCCGAAGG
CATTCGAACGAAGAG
Found at i:73438575 original size:21 final size:21
Alignment explanation
Indices: 73438551--73438607 Score: 53
Period size: 21 Copynumber: 2.7 Consensus size: 21
73438541 CAAACGCCCA
*
73438551 TGTGAAGAGGGCACACGACCG
1 TGTGAAAAGGGCACACGACCG
** *
73438572 TGTGGCTAA-GGCACACGCCCG
1 TGT-GAAAAGGGCACACGACCG
73438593 TGTGAAAAGAGGCAC
1 TGTGAAAAG-GGCAC
73438608 TCAGCCATGT
Statistics
Matches: 27, Mismatches: 6, Indels: 5
0.71 0.16 0.13
Matches are distributed among these distances:
20 3 0.11
21 17 0.63
22 7 0.26
ACGTcount: A:0.28, C:0.25, G:0.35, T:0.12
Consensus pattern (21 bp):
TGTGAAAAGGGCACACGACCG
Found at i:73452915 original size:6 final size:6
Alignment explanation
Indices: 73452906--73452935 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
73452896 TAAAGGTAAA
73452906 GAGAGG GAGAGG GAGAGG GAGAGG GAGAGG
1 GAGAGG GAGAGG GAGAGG GAGAGG GAGAGG
73452936 TGGTTAGGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.67, T:0.00
Consensus pattern (6 bp):
GAGAGG
Found at i:73454398 original size:39 final size:39
Alignment explanation
Indices: 73454318--73454561 Score: 137
Period size: 39 Copynumber: 6.2 Consensus size: 39
73454308 TGCAAATTTT
* * *
73454318 TAATACACCGGCACACAGCTTGCTAGGCACAAAGCTCGAA
1 TAAT-CACCGGCACACAGCCTACTAGGAACAAAGCTCGAA
* * * *
73454358 TAATCACCGGCACACCGCCTATTAGGAACATAGCTTGAA
1 TAATCACCGGCACACAGCCTACTAGGAACAAAGCTCGAA
* * * * * * * *
73454397 TAATCACCGGCGCATAGCTTGCTAGGCATATAGCCCGAA
1 TAATCACCGGCACACAGCCTACTAGGAACAAAGCTCGAA
* * * * * * * * **
73454436 TAATTACCGGAACATATCTTGCTAGGGACATAGCAGGAA
1 TAATCACCGGCACACAGCCTACTAGGAACAAAGCTCGAA
* ** * * *
73454475 TAATCACTGGCACACAGCCTGTTAGGCACATAGCCCGAA
1 TAATCACCGGCACACAGCCTACTAGGAACAAAGCTCGAA
* * * * * * *
73454514 TAATCATCGGCACATAGCCTGCTATGCACATATCTCGAA
1 TAATCACCGGCACACAGCCTACTAGGAACAAAGCTCGAA
73454553 TAATCACCG
1 TAATCACCG
73454562 TATTTCTAAT
Statistics
Matches: 161, Mismatches: 43, Indels: 1
0.79 0.21 0.00
Matches are distributed among these distances:
39 157 0.98
40 4 0.02
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.20
Consensus pattern (39 bp):
TAATCACCGGCACACAGCCTACTAGGAACAAAGCTCGAA
Found at i:73454467 original size:78 final size:78
Alignment explanation
Indices: 73454318--73454561 Score: 245
Period size: 78 Copynumber: 3.1 Consensus size: 78
73454308 TGCAAATTTT
* * * * ** **
73454318 TAATACACCGGCACACAGCTTGCTAGGCACAAAGCTCGAATAATCACCGGCACACCGCCTATTAG
1 TAAT-CACCGGCACACAGCCTGCTAGGCACATAGCCCGAATAATCACCGGAACATAGCCTGCTAG
*
73454383 GAACATAGCTTGAA
65 GAACATAGCTCGAA
* * * * * * *
73454397 TAATCACCGGCGCATAGCTTGCTAGGCATATAGCCCGAATAATTACCGGAACATATCTTGCTAGG
1 TAATCACCGGCACACAGCCTGCTAGGCACATAGCCCGAATAATCACCGGAACATAGCCTGCTAGG
* **
73454462 GACATAGCAGGAA
66 AACATAGCTCGAA
* * * * *
73454475 TAATCACTGGCACACAGCCTGTTAGGCACATAGCCCGAATAATCATCGGCACATAGCCTGCTATG
1 TAATCACCGGCACACAGCCTGCTAGGCACATAGCCCGAATAATCACCGGAACATAGCCTGCTAGG
* *
73454540 CACATATCTCGAA
66 AACATAGCTCGAA
73454553 TAATCACCG
1 TAATCACCG
73454562 TATTTCTAAT
Statistics
Matches: 132, Mismatches: 33, Indels: 1
0.80 0.20 0.01
Matches are distributed among these distances:
78 128 0.97
79 4 0.03
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.20
Consensus pattern (78 bp):
TAATCACCGGCACACAGCCTGCTAGGCACATAGCCCGAATAATCACCGGAACATAGCCTGCTAGG
AACATAGCTCGAA
Found at i:73454530 original size:117 final size:117
Alignment explanation
Indices: 73454318--73454561 Score: 290
Period size: 117 Copynumber: 2.1 Consensus size: 117
73454308 TGCAAATTTT
* * * * *
73454318 TAATACACCGGCACACAGCTTGCTAGGCACAAAGCTCGAATAATCACCGGCACACCGCCTATTAG
1 TAAT-CACCGGAACATATCTTGCTAGGCACAAAGCACGAATAATCACCGGCACACAGCCTATTAG
** * * *
73454383 GAACATAGCTTGAATAATCACCGGCGCATAGCTTGCTAGGCATATAGCCCGAA
65 GAACATAGCCCGAATAATCACCGGCACATAGCCTGCTAGGCACATAGCCCGAA
* * * * * *
73454436 TAATTACCGGAACATATCTTGCTAGGGACATAGCAGGAATAATCACTGGCACACAGCCTGTTAGG
1 TAATCACCGGAACATATCTTGCTAGGCACAAAGCACGAATAATCACCGGCACACAGCCTATTAGG
* * * * *
73454501 CACATAGCCCGAATAATCATCGGCACATAGCCTGCTATGCACATATCTCGAA
66 AACATAGCCCGAATAATCACCGGCACATAGCCTGCTAGGCACATAGCCCGAA
73454553 TAATCACCG
1 TAATCACCG
73454562 TATTTCTAAT
Statistics
Matches: 104, Mismatches: 22, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
117 100 0.96
118 4 0.04
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.20
Consensus pattern (117 bp):
TAATCACCGGAACATATCTTGCTAGGCACAAAGCACGAATAATCACCGGCACACAGCCTATTAGG
AACATAGCCCGAATAATCACCGGCACATAGCCTGCTAGGCACATAGCCCGAA
Found at i:73458754 original size:19 final size:19
Alignment explanation
Indices: 73458730--73458910 Score: 275
Period size: 19 Copynumber: 9.8 Consensus size: 19
73458720 AATCTTTAAG
73458730 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
73458749 GATATGCAATCTTAGATGT
1 GATATGCAATCTTAGATAT
73458768 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
73458787 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
73458806 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
73458823 GAT-TGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
73458841 GATATGCAATCTTAGATGT
1 GATATGCAATCTTAGATAT
*
73458860 GATA--CAATCTTCGATAT
1 GATATGCAATCTTAGATAT
*
73458877 GAT-TGCAATCTTAAATAT
1 GATATGCAATCTTAGATAT
73458895 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
73458911 AGATATGATT
Statistics
Matches: 146, Mismatches: 10, Indels: 12
0.87 0.06 0.07
Matches are distributed among these distances:
17 29 0.20
18 30 0.21
19 87 0.60
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:73458849 original size:73 final size:73
Alignment explanation
Indices: 73458736--73458917 Score: 264
Period size: 73 Copynumber: 2.5 Consensus size: 73
73458726 TAAGGATATG
* *
73458736 CAATCTTAGATATGATATGCAATCTTAGATGTGATATGCAATCTTAGATATGATATGTAATCTTA
1 CAATCTTAGATATGATATGCAATCTTAGATATGATATGCAATCTTAGATATGATA--CAATCTTA
73458801 GATATGA-TA
64 GATATGATTA
* *
73458810 CAATCTTAGATATGAT-TGCAATCTTAGATATGATATGCAATCTTAGATGTGATACAATCTTCGA
1 CAATCTTAGATATGATATGCAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAGA
*
73458874 TATGATTG
66 TATGATTA
*
73458882 CAATCTTAAATATGATATGCAATCTTAGA-A-GATATG
1 CAATCTTAGATATGATATGCAATCTTAGATATGATATG
73458918 ATTTTGTATC
Statistics
Matches: 100, Mismatches: 6, Indels: 7
0.88 0.05 0.06
Matches are distributed among these distances:
71 19 0.19
72 17 0.17
73 48 0.48
74 16 0.16
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.37
Consensus pattern (73 bp):
CAATCTTAGATATGATATGCAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAGA
TATGATTA
Found at i:73458852 original size:54 final size:54
Alignment explanation
Indices: 73458730--73458910 Score: 290
Period size: 54 Copynumber: 3.3 Consensus size: 54
73458720 AATCTTTAAG
*
73458730 GATATGCAATCTTAGATATGATATGCAATCTTAGATGTGATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATATGATA--CAATCTTAGATATGAT-TGCAATCTTAGATAT
*
73458787 GATATGTAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGATAT
1 GATATGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGATAT
* * *
73458841 GATATGCAATCTTAGATGTGATACAATCTTCGATATGATTGCAATCTTAAATAT
1 GATATGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGATAT
73458895 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
73458911 AGATATGATT
Statistics
Matches: 118, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
54 81 0.69
55 15 0.13
57 22 0.19
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.37
Consensus pattern (54 bp):
GATATGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGATAT
Found at i:73464654 original size:21 final size:21
Alignment explanation
Indices: 73464624--73464664 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
73464614 CTTCTATTTC
* *
73464624 AAAAAAAAAAGAGAAAAAAAT
1 AAAAAAAAAAAACAAAAAAAT
*
73464645 AAAAACAAAAAACAAAAAAA
1 AAAAAAAAAAAACAAAAAAA
73464665 AAATAGAGAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.88, C:0.05, G:0.05, T:0.02
Consensus pattern (21 bp):
AAAAAAAAAAAACAAAAAAAT
Found at i:73464665 original size:22 final size:22
Alignment explanation
Indices: 73464624--73464666 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
73464614 CTTCTATTTC
*
73464624 AAAAAAAAAAGAGAAAAAAATA
1 AAAAAAAAAACAGAAAAAAATA
*
73464646 AAAACAAAAAACAAAAAAAAA
1 AAAA-AAAAAACAGAAAAAAA
73464667 ATAGAGAGGC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.88, C:0.05, G:0.05, T:0.02
Consensus pattern (22 bp):
AAAAAAAAAACAGAAAAAAATA
Found at i:73465682 original size:44 final size:43
Alignment explanation
Indices: 73465626--73466391 Score: 466
Period size: 44 Copynumber: 17.4 Consensus size: 43
73465616 GATCTAAGAT
* *
73465626 GATTTGGCGTCTCTGTATTGTCATG-GAGCAGATCGAAGATACCA
1 GATTTGGCATCTCTGTATTGGCA-GAGAGCAGATCGAAGATA-CA
* * * *
73465670 GATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCAAAGACATAGCT
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAG--ATA-CA
* * * ** * *
73465716 GATTTGGCTTTCACGTGT-TTACGTTGA-AGCAAATCTAAGAT---
1 GATTTGGC-ATCTC-TGTATT-GGCAGAGAGCAGATCGAAGATACA
* * * *
73465757 GATTTAGCGTCTCTGTATTGGCAGAGAGTAGATCGAAGATGACT
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGAT-ACA
* *
73465801 GATTTGGCATCTCTGTATTCGGCGGAGAGCAGATCGAAGACATAGCT
1 GATTTGGCATCTCTGTATT-GGCAGAGAGCAGATCGAAG--ATA-CA
* * ** * * *
73465848 GATTTGGC-TTTCATGTGTTTAC-GTTGAAGCAAATCTAAGAT---
1 GATTTGGCATCTC-TGTATTGGCAG-AG-AGCAGATCGAAGATACA
73465889 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGAT-ACA
* * * *
73465933 GATTTGGCATCTCTGTATTAGTAGAGAGCAGATCAAAGATGATA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGAT-ACA
* * *
73465977 TATTTGGCATCTCTGTATTCG-ATGGAGAGCAGATCGAAGACATAGCT
1 GATTTGGCATCTCTGTATTGGCA--GAGAGCAGATCGAAG--ATA-CA
* * * ** *
73466024 GATTTGGCTTCCACGTGT-TTACGTTGA-AGCA-AGTCTAAGAT---
1 GATTTGGCAT-CTC-TGTATT-GGCAGAGAGCAGA-TCGAAGATACA
* *
73466065 GATTTGGCATCTCTGTATTGGCAAAGAGCAGATCGAAGATAGTA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA-CA
* *
73466109 GATTTGGCATCTCTGTATTGGCAGAGAGTAGATCAAAGATGACA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGAT-ACA
*
73466153 GATTTGGCATCTCTGTATTCGGCAGAGAGCAGATCGAAGACATAGCT
1 GATTTGGCATCTCTGTATT-GGCAGAGAGCAGATCGAAG--ATA-CA
* * * ** * *
73466200 GATTTGGCTTCCACGTGT-TTACGTTGA-AGCA-AGTCTAA-A-A-T
1 GATTTGGCAT-CTC-TGTATT-GGCAGAGAGCAGA-TCGAAGATACA
73466241 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGAT-ACA
** *
73466285 GATTTGAAATCTCTGTATTGGCAGAGAGCAGATCGAAGATAATA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGAT-ACA
* *
73466329 GATTTGG-AGTCTCTGTATTGGCAGAGAGTAGATCGAAGATAGAA
1 GATTTGGCA-TCTCTGTATTGGCAGAGAGCAGATCGAAGATA-CA
* *
73466373 GTTTTGGCATCTCCGTATT
1 GATTTGGCATCTCTGTATT
73466392 TGACGGGGAG
Statistics
Matches: 572, Mismatches: 90, Indels: 120
0.73 0.12 0.15
Matches are distributed among these distances:
39 17 0.03
40 55 0.10
41 44 0.08
42 4 0.01
43 6 0.01
44 260 0.45
45 57 0.10
46 22 0.04
47 81 0.14
48 18 0.03
49 8 0.01
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.30
Consensus pattern (43 bp):
GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATACA
Found at i:73465885 original size:132 final size:130
Alignment explanation
Indices: 73465609--73465971 Score: 550
Period size: 132 Copynumber: 2.8 Consensus size: 130
73465599 GTATTTACAC
* *
73465609 TGAAGCAGATCTAAGATGATTTGGCGTCTCTGTATTGTCATG-GAGCAGATCGAAGATACCAGAT
1 TGAAGCAAATCTAAGATGATTTGGCGTCTCTGTATTGGCA-GAGAGCAGATCGAAGATA-CAGAT
*
73465673 TTGGCGTCTCTGTATTGGCAGGGAGCAGATCAAAGACATAGCTGATTTGGCTTTCACGTGTTTAC
64 TTGGCATCTCTGTATTGGCAGGGAGCAGATCAAAGACATAGCTGATTTGGCTTTCACGTGTTTAC
73465738 GT
129 GT
* * *
73465740 TGAAGCAAATCTAAGATGATTTAGCGTCTCTGTATTGGCAGAGAGTAGATCGAAGATGACTGATT
1 TGAAGCAAATCTAAGATGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGAT-ACAGATT
* *
73465805 TGGCATCTCTGTATTCGGC-GGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCATGTGTTTA
65 TGGCATCTCTGTATT-GGCAGG-GAGCAGATCAAAGACATAGCTGATTTGGCTTTCACGTGTTTA
73465869 CGT
128 CGT
*
73465872 TGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATT
1 TGAAGCAAATCTAAGATGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGAT-ACAGATT
* * *
73465937 TGGCATCTCTGTATTAGTAGAGAGCAGATCAAAGA
65 TGGCATCTCTGTATTGGCAGGGAGCAGATCAAAGA
73465972 TGATATATTT
Statistics
Matches: 210, Mismatches: 17, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
130 1 0.00
131 86 0.41
132 123 0.59
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.29
Consensus pattern (130 bp):
TGAAGCAAATCTAAGATGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATACAGATTT
GGCATCTCTGTATTGGCAGGGAGCAGATCAAAGACATAGCTGATTTGGCTTTCACGTGTTTACGT
Found at i:73465948 original size:176 final size:177
Alignment explanation
Indices: 73465757--73466367 Score: 955
Period size: 176 Copynumber: 3.5 Consensus size: 177
73465747 AATCTAAGAT
* * * *
73465757 GATTTAGCGTCTCTGTATTGGCAGAGAGTAGATCGAAGATGACT-GATTTGGCATCTCTGTATTC
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACTAGATTTGGCATCTCTGTATTC
* * * *
73465821 GGCGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCATGTGTTTACGTTGAAGCAAATCTAA
66 GGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCTAA
73465886 GATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA
131 GATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA
* * *
73465933 GATTTGGCATCTCTGTATTAGTAGAGAGCAGATCAAAGATGA-TATATTTGGCATCTCTGTATTC
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACTAGATTTGGCATCTCTGTATTC
***
73465997 GATGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCTAA
66 GGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCTAA
* **
73466062 GATGATTTGGCATCTCTGTATTGGCAAAGAGCAGATCGAAGATAGTA
131 GATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA
*
73466109 GATTTGGCATCTCTGTATTGGCAGAGAGTAGATCAAAGATGAC-AGATTTGGCATCTCTGTATTC
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACTAGATTTGGCATCTCTGTATTC
73466173 GGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCTAA
66 GGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCTAA
*
73466238 AATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA
131 GATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA
** * *
73466285 GATTTGAAATCTCTGTATTGGCAGAGAGCAGATCGAAGAT-AATAGATTTGG-AGTCTCTGTATT
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACTAGATTTGGCA-TCTCTGTATT
*
73466348 -GGCAGAGAGTAGATCGAAGA
65 CGGCAGAGAGCAGATCGAAGA
73466368 TAGAAGTTTT
Statistics
Matches: 399, Mismatches: 32, Indels: 9
0.91 0.07 0.02
Matches are distributed among these distances:
175 22 0.06
176 377 0.94
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (177 bp):
GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACTAGATTTGGCATCTCTGTATTC
GGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCTAA
GATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA
Found at i:73466496 original size:352 final size:350
Alignment explanation
Indices: 73465766--73466500 Score: 939
Period size: 352 Copynumber: 2.1 Consensus size: 350
73465756 TGATTTAGCG
* * * * *
73465766 TCTCTGTATTGGCAGAGAGTAGATCGAAGATGACTGATTTGGCATCTCTGTATTCGGCGGAGAGC
1 TCTCTGTATTAGCAGAGAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTCGGCAGAGAGC
* * *
73465831 AGATCGAAGACATAGCTGATTTGGCTTTCATGTGTTTACGTTGAAGCAAATCTAAGATGATTTGG
66 AGATCGAAGACATAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAATCTAAAATGATTTGG
** *
73465896 CATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGTAGAGAG
131 CATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGAAATCTCTGTATTAGCAGAGAG
* * **
73465961 CAGATCAAAGATGATATATTTGGCATCTCTGTATTCGATGGAGAGCAGATCGAAGACATAGCTGA
196 CAGATCAAAGATAATAGATTTGGCATCTCTGTATTCGA-GGAGAGCAGATCGAAGA-ATAGAAGA
* * * *
73466026 TTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGGCAAAG
259 TTTGGCATCCACGTATTTACGTGGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGACAAAG
* * * *
73466091 AGCAGATCGAAGATAGTAGATTTGGCA
324 AACAGATCGAAGATAGCAGATCTGACA
* *
73466118 TCTCTGTATTGGCAGAGAGTAGATCAAAGATGACAGATTTGGCATCTCTGTATTCGGCAGAGAGC
1 TCTCTGTATTAGCAGAGAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTCGGCAGAGAGC
*
73466183 AGATCGAAGACATAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCTAAAATGATTTGG
66 AGATCGAAGACATAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAATCTAAAATGATTTGG
*
73466248 CATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGAAATCTCTGTATTGGCAGAGAG
131 CATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGAAATCTCTGTATTAGCAGAGAG
* * * *
73466313 CAGATCGAAGATAATAGATTTGG-AGTCTCTGTATTGGCA-GAGAGTAGATCGAAG-ATAGAAGT
196 CAGATCAAAGATAATAGATTTGGCA-TCTCTGTATTCG-AGGAGAGCAGATCGAAGAATAGAAGA
* * * *
73466375 TTTGGCATCTC-CGTATTTGACG-GGGAGCAGATTC-AAGATGATTTGGCAT-TCCTGTGTTTAC
259 TTTGGCATC-CACGTATTT-ACGTGGAAGCA-AGTCTAAGATGATTTGGCATCT-CTGTATTGAC
**
73466436 AGGGAACAGATCGAAGACATAGCAGATCTGACA
320 AAAGAACAGATCGAAG--ATAGCAGATCTGACA
* *
73466469 TTCCTGTGTTTATAGC-GA-AGCAGATCAAAGAT
1 -T-CTCTGTAT-TAGCAGAGAGCAGATCAAAGAT
73466501 TTTAACATGG
Statistics
Matches: 335, Mismatches: 37, Indels: 22
0.85 0.09 0.06
Matches are distributed among these distances:
348 1 0.00
349 59 0.18
350 7 0.02
351 27 0.08
352 229 0.68
353 9 0.03
354 3 0.01
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (350 bp):
TCTCTGTATTAGCAGAGAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTCGGCAGAGAGC
AGATCGAAGACATAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAATCTAAAATGATTTGG
CATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGAAATCTCTGTATTAGCAGAGAG
CAGATCAAAGATAATAGATTTGGCATCTCTGTATTCGAGGAGAGCAGATCGAAGAATAGAAGATT
TGGCATCCACGTATTTACGTGGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGACAAAGAA
CAGATCGAAGATAGCAGATCTGACA
Done.