Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 221 of 255
Found at i:73466559 original size:44 final size:45
Alignment explanation
Indices: 73466414--73466687 Score: 159
Period size: 44 Copynumber: 6.1 Consensus size: 45
73466404 GATTCAAGAT
* * *
73466414 GATTTGGCATTCCTGTGTTTACAGGGAAC-AGATCGAAGACATAGCA
1 GATTTGACATCCCTGTGTTTACAGGGAACAAGATTGAAG--ATAGCA
* * * * ** ***
73466460 GATCTGACATTCCTGTGTTTATAGCGAAGC-AGATCAAAGATTTTA
1 GATTTGACATCCCTGTGTTTACAGGGAA-CAAGATTGAAGATAGCA
** * *
73466505 -ACATGGCATCCCTGTGTTTATAGGGAACAAG-TTGAAGATAGCA
1 GATTTGACATCCCTGTGTTTACAGGGAACAAGATTGAAGATAGCA
* *
73466548 GATTTGTCATCCCTGTGTTTACAGGGAAC-AGATGGAAGACATAGCA
1 GATTTGACATCCCTGTGTTTACAGGGAACAAGATTGAAG--ATAGCA
* * * * * ** **
73466594 GATCTGACATTCCTATGCTTACAGCGAAGTAGATTGAAGATTTCA
1 GATTTGACATCCCTGTGTTTACAGGGAACAAGATTGAAGATAGCA
* * * *
73466639 GCA--TGGCATCCCTGTGTTTATATGGAACAAG-TTGAAGATAGTA
1 G-ATTTGACATCCCTGTGTTTACAGGGAACAAGATTGAAGATAGCA
73466682 GATTTG
1 GATTTG
73466688 GCGTCTCTGC
Statistics
Matches: 173, Mismatches: 45, Indels: 22
0.72 0.19 0.09
Matches are distributed among these distances:
42 1 0.01
43 20 0.12
44 74 0.43
45 8 0.05
46 53 0.31
47 17 0.10
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (45 bp):
GATTTGACATCCCTGTGTTTACAGGGAACAAGATTGAAGATAGCA
Found at i:73466575 original size:134 final size:134
Alignment explanation
Indices: 73466414--73466689 Score: 435
Period size: 134 Copynumber: 2.1 Consensus size: 134
73466404 GATTCAAGAT
* * *
73466414 GATTTGGCATTCCTGTGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGACATTCCTGTGTT
1 GATTTGGCATCCCTGTGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGACATTCCTATGCT
* *
73466479 TATAGCGAAGCAGATCAAAGATTTTAACATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGAT
66 TACAGCGAAGCAGATCAAAGATTTCAACATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGAT
73466544 AGCA
131 AGCA
* *
73466548 GATTTGTCATCCCTGTGTTTACAGGGAACAGATGGAAGACATAGCAGATCTGACATTCCTATGCT
1 GATTTGGCATCCCTGTGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGACATTCCTATGCT
* ** * *
73466613 TACAGCGAAGTAGATTGAAGATTTCAGCATGGCATCCCTGTGTTTATATGGAACAAGTTGAAGAT
66 TACAGCGAAGCAGATCAAAGATTTCAACATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGAT
*
73466678 AGTA
131 AGCA
73466682 GATTTGGC
1 GATTTGGC
73466690 GTCTCTGCAT
Statistics
Matches: 128, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
134 128 1.00
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.29
Consensus pattern (134 bp):
GATTTGGCATCCCTGTGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGACATTCCTATGCT
TACAGCGAAGCAGATCAAAGATTTCAACATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGAT
AGCA
Found at i:73466616 original size:46 final size:45
Alignment explanation
Indices: 73466421--73466617 Score: 170
Period size: 44 Copynumber: 4.4 Consensus size: 45
73466411 GATGATTTGG
73466421 CATTCCTGTGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGA
1 CATTCCTGTGTTTACAGGGAACAGAT-GAAGACATAGCAGATCTGA
* * * * *** *
73466467 CATTCCTGTGTTTATAGCGAAGCAGATCAA-AGATTTTA-A-CATGG
1 CATTCCTGTGTTTACAGGGAA-CAGATGAAGACATAGCAGATC-TGA
* * * * *
73466511 CATCCCTGTGTTTATAGGGAACAAGTTGAAG--ATAGCAGATTTGT
1 CATTCCTGTGTTTACAGGGAAC-AGATGAAGACATAGCAGATCTGA
*
73466555 CATCCCTGTGTTTACAGGGAACAGATGGAAGACATAGCAGATCTGA
1 CATTCCTGTGTTTACAGGGAACAGAT-GAAGACATAGCAGATCTGA
* *
73466601 CATTCCTATGCTTACAG
1 CATTCCTGTGTTTACAG
73466618 CGAAGTAGAT
Statistics
Matches: 118, Mismatches: 24, Indels: 18
0.74 0.15 0.11
Matches are distributed among these distances:
43 8 0.07
44 55 0.47
45 4 0.03
46 46 0.39
47 5 0.04
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (45 bp):
CATTCCTGTGTTTACAGGGAACAGATGAAGACATAGCAGATCTGA
Found at i:73467155 original size:19 final size:19
Alignment explanation
Indices: 73467131--73467293 Score: 228
Period size: 19 Copynumber: 8.8 Consensus size: 19
73467121 AATCTTTAAG
73467131 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
73467150 GATATGCAATCTTAGATGT
1 GATATGCAATCTTAGATAT
73467169 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
73467188 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
73467207 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
73467224 GAT-TGAAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* * *
73467242 GATATACAATCTTAGCTGT
1 GATATGCAATCTTAGATAT
*
73467261 GATA--CAATCTTCGATAT
1 GATATGCAATCTTAGATAT
*
73467278 GATATGGAATCTTAGA
1 GATATGCAATCTTAGA
73467294 AGATATGATT
Statistics
Matches: 127, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
17 30 0.24
18 15 0.12
19 82 0.65
ACGTcount: A:0.36, C:0.11, G:0.17, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:73467253 original size:54 final size:55
Alignment explanation
Indices: 73467131--73467300 Score: 238
Period size: 54 Copynumber: 3.1 Consensus size: 55
73467121 AATCTTTAAG
* *
73467131 GATATGCAATCTTAGATATGATATGCAATCTTAGATGTGATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATATGATA--CAATCTTAGATATGATATGAAATCTTAGATAT
73467188 GATATGCAATCTTAGATATGATACAATCTTAGATATGAT-TGAAATCTTAGATAT
1 GATATGCAATCTTAGATATGATACAATCTTAGATATGATATGAAATCTTAGATAT
* * * * *
73467242 GATATACAATCTTAGCTGTGATACAATCTTCGATATGATATGGAATCTTAGA-A-
1 GATATGCAATCTTAGATATGATACAATCTTAGATATGATATGAAATCTTAGATAT
73467295 GATATG
1 GATATG
73467301 ATTTTGTAAT
Statistics
Matches: 104, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
53 5 0.05
54 50 0.48
55 26 0.25
57 23 0.22
ACGTcount: A:0.36, C:0.11, G:0.17, T:0.36
Consensus pattern (55 bp):
GATATGCAATCTTAGATATGATACAATCTTAGATATGATATGAAATCTTAGATAT
Found at i:73469132 original size:45 final size:45
Alignment explanation
Indices: 73469033--73469136 Score: 111
Period size: 45 Copynumber: 2.3 Consensus size: 45
73469023 TGTCTTCGTA
* * * * * *
73469033 CCCACAACCTACATGGCATCTTGTCTGCGGATATTGGTGGTTTTG
1 CCCACAACCTACATCGAAACTTGTCTGAGAATATTGGTGGTTTCG
* *
73469078 CCCATAACCTACATCGAAACTTGTCTGATAATATTGGT-GTATTCG
1 CCCACAACCTACATCGAAACTTGTCTGAGAATATTGGTGGT-TTCG
*
73469123 TCCACAACCTACAT
1 CCCACAACCTACAT
73469137 GGCAGCTTAT
Statistics
Matches: 48, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
44 2 0.04
45 46 0.96
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.32
Consensus pattern (45 bp):
CCCACAACCTACATCGAAACTTGTCTGAGAATATTGGTGGTTTCG
Found at i:73469202 original size:43 final size:46
Alignment explanation
Indices: 73469101--73469204 Score: 121
Period size: 43 Copynumber: 2.4 Consensus size: 46
73469091 TCGAAACTTG
* * *
73469101 TCTGATAATATTGGT-GTATTCGTCCACAACCTACATGGCAGCTTA
1 TCTGAAAATATTGGTGGTATTCATCCACAACCTAAATGGCAGCTTA
*
73469146 T-TTACAAAT-TTGGTGGT-TT-ATCCACAACCTAAATGGCAGC-TA
1 TCTGA-AAATATTGGTGGTATTCATCCACAACCTAAATGGCAGCTTA
73469188 TCTGAAAATATTGGTGG
1 TCTGAAAATATTGGTGG
73469205 CTTCGACCAC
Statistics
Matches: 50, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
42 7 0.14
43 28 0.56
44 9 0.18
45 6 0.12
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34
Consensus pattern (46 bp):
TCTGAAAATATTGGTGGTATTCATCCACAACCTAAATGGCAGCTTA
Found at i:73470500 original size:30 final size:30
Alignment explanation
Indices: 73470448--73470532 Score: 118
Period size: 30 Copynumber: 2.8 Consensus size: 30
73470438 TCCTGGAGCA
* *
73470448 ATTTTGACTTGTTTGAAAATCATTTAAAATG
1 ATTTTAACTTGATTG-AAATCATTTAAAATG
73470479 ATTTTAACTTGATTGAAATCATTTAAAATG
1 ATTTTAACTTGATTGAAATCATTTAAAATG
*
73470509 ATTTTAA-TTGGATTTAAATCATTT
1 ATTTTAACTT-GATTGAAATCATTT
73470533 TGACTTGGTT
Statistics
Matches: 50, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
29 2 0.04
30 35 0.70
31 13 0.26
ACGTcount: A:0.36, C:0.06, G:0.11, T:0.47
Consensus pattern (30 bp):
ATTTTAACTTGATTGAAATCATTTAAAATG
Found at i:73470547 original size:20 final size:20
Alignment explanation
Indices: 73470501--73470552 Score: 52
Period size: 20 Copynumber: 2.6 Consensus size: 20
73470491 TTGAAATCAT
*
73470501 TTAAAATGATTTTAATTGGA
1 TTAAAATCATTTTAATTGGA
* *
73470521 TTTAAATCATTTTGACTTGG-
1 TTAAAATCATTTT-AATTGGA
*
73470541 TTAAAATTATTT
1 TTAAAATCATTT
73470553 GCACTTGATT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
20 21 0.81
21 5 0.19
ACGTcount: A:0.35, C:0.04, G:0.12, T:0.50
Consensus pattern (20 bp):
TTAAAATCATTTTAATTGGA
Found at i:73470867 original size:18 final size:18
Alignment explanation
Indices: 73470822--73470856 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
73470812 ATGAGTTTAC
*
73470822 AAATATTTTAAATTATTG
1 AAATCTTTTAAATTATTG
73470840 AAATCTTTTAAATTATT
1 AAATCTTTTAAATTATT
73470857 TATGATTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (18 bp):
AAATCTTTTAAATTATTG
Found at i:73475325 original size:13 final size:13
Alignment explanation
Indices: 73475307--73475332 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
73475297 CAAAAAGTGA
73475307 AAATTCTCAAAGG
1 AAATTCTCAAAGG
73475320 AAATTCTCAAAGG
1 AAATTCTCAAAGG
73475333 CACCAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.15, T:0.23
Consensus pattern (13 bp):
AAATTCTCAAAGG
Found at i:73482426 original size:27 final size:27
Alignment explanation
Indices: 73482396--73482573 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
73482386 ATATTGAGTC
* * * *
73482396 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
73482423 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
73482450 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
73482478 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
73482505 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
73482532 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
73482559 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
73482574 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:73482535 original size:82 final size:81
Alignment explanation
Indices: 73482417--73482572 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
73482407 TGCTATATAA
* *
73482417 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
73482482 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
73482499 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
73482563 CACTTAGTGC
65 CACTTAGTGC
73482573 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:73490042 original size:27 final size:27
Alignment explanation
Indices: 73489964--73490073 Score: 125
Period size: 27 Copynumber: 4.1 Consensus size: 27
73489954 CAGCATGGCT
* *
73489964 ACCAGAACAGATAA-TGTGACAGAGTC
1 ACCAGAACAGATAATTGTGGCAGAGCC
* *
73489990 ACCAGATACAAATAATCGTGGCAGAGCC
1 ACCAGA-ACAGATAATTGTGGCAGAGCC
*
73490018 ATCAGAACAGA-AATATGTGGCAGAGCC
1 ACCAGAACAGATAAT-TGTGGCAGAGCC
* *
73490045 ACCAGATCAGATAATTGTGGCATAGCC
1 ACCAGAACAGATAATTGTGGCAGAGCC
73490072 AC
1 AC
73490074 TAGGACGCTT
Statistics
Matches: 70, Mismatches: 10, Indels: 7
0.80 0.11 0.08
Matches are distributed among these distances:
26 9 0.13
27 44 0.63
28 17 0.24
ACGTcount: A:0.39, C:0.22, G:0.23, T:0.16
Consensus pattern (27 bp):
ACCAGAACAGATAATTGTGGCAGAGCC
Found at i:73490065 original size:54 final size:54
Alignment explanation
Indices: 73489966--73490072 Score: 144
Period size: 54 Copynumber: 2.0 Consensus size: 54
73489956 GCATGGCTAC
* *
73489966 CAGAACAGATAATGTGACAGAGTCACCAGATACAAATAATCGTGGCAGAGCCAT
1 CAGAACAGAAAATGTGACAGAGCCACCAGATACAAATAATCGTGGCAGAGCCAT
* * * *
73490020 CAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CAGAACAGAAA-ATGTGACAGAGCCACCAGATACAAATAATCGTGGCAGAGCCA
73490073 CTAGGACGCT
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
54 28 0.61
55 18 0.39
ACGTcount: A:0.39, C:0.21, G:0.23, T:0.17
Consensus pattern (54 bp):
CAGAACAGAAAATGTGACAGAGCCACCAGATACAAATAATCGTGGCAGAGCCAT
Found at i:73494807 original size:22 final size:22
Alignment explanation
Indices: 73494782--73494826 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
73494772 TTCTTTAAAG
73494782 TATGCCATAAAGGCATCTCCTT
1 TATGCCATAAAGGCATCTCCTT
73494804 TATGCCATAAAGGCATCTCCTT
1 TATGCCATAAAGGCATCTCCTT
73494826 T
1 T
73494827 TATCATGTGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.27, C:0.27, G:0.13, T:0.33
Consensus pattern (22 bp):
TATGCCATAAAGGCATCTCCTT
Found at i:73504335 original size:41 final size:41
Alignment explanation
Indices: 73504279--73504356 Score: 104
Period size: 41 Copynumber: 1.9 Consensus size: 41
73504269 GTTTTGATAT
*
73504279 TCGGGCCTTGAGCCTAGCAAGCCTT-GTGCTGGTGACTTTGA
1 TCGGGCCTTGAGCCTAGC-AGCCTTAGTGCCGGTGACTTTGA
* * *
73504320 TCGGGCTTTGTGCCTAGCAGGCTTAGTGCCGGTGACT
1 TCGGGCCTTGAGCCTAGCAGCCTTAGTGCCGGTGACT
73504357 AAATATCAGA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 5 0.16
41 27 0.84
ACGTcount: A:0.13, C:0.24, G:0.33, T:0.29
Consensus pattern (41 bp):
TCGGGCCTTGAGCCTAGCAGCCTTAGTGCCGGTGACTTTGA
Found at i:73508184 original size:20 final size:21
Alignment explanation
Indices: 73508137--73508182 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
73508127 AGTTGGTGAG
*
73508137 AAAAAA-TAAATATATATTAT
1 AAAAAATTAAATATAAATTAT
*
73508157 AAAAAATTAAATATAAATTTT
1 AAAAAATTAAATATAAATTAT
73508178 AAAAA
1 AAAAA
73508183 TTTTAAGAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 6 0.26
21 17 0.74
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (21 bp):
AAAAAATTAAATATAAATTAT
Found at i:73510356 original size:17 final size:17
Alignment explanation
Indices: 73510303--73510366 Score: 85
Period size: 17 Copynumber: 3.6 Consensus size: 17
73510293 AATCAAATCT
73510303 TCTAAGATTGCATATCATA
1 TCTAAGATTG--TATCATA
73510322 TCTAAGATT-TCAATCATA
1 TCTAAGATTGT--ATCATA
73510340 TCTAAGATTGTATCATA
1 TCTAAGATTGTATCATA
73510357 TCTAAGATTG
1 TCTAAGATTG
73510367 CATATCATTG
Statistics
Matches: 42, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
16 1 0.02
17 16 0.38
18 15 0.36
19 10 0.24
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (17 bp):
TCTAAGATTGTATCATA
Found at i:73510359 original size:35 final size:37
Alignment explanation
Indices: 73510303--73510374 Score: 112
Period size: 35 Copynumber: 2.0 Consensus size: 37
73510293 AATCAAATCT
*
73510303 TCTAAGATTGCATATCATATCTAAGATTTCA-ATCATA
1 TCTAAGATTG-ATATCATATCTAAGATTGCATATCATA
73510340 TCTAAGATTG-TATCATATCTAAGATTGCATATCAT
1 TCTAAGATTGATATCATATCTAAGATTGCATATCAT
73510375 TGAAGATTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
35 18 0.55
36 5 0.15
37 10 0.30
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (37 bp):
TCTAAGATTGATATCATATCTAAGATTGCATATCATA
Found at i:73510372 original size:14 final size:15
Alignment explanation
Indices: 73510335--73510372 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
73510325 AAGATTTCAA
73510335 TCATATCTAAGATTG
1 TCATATCTAAGATTG
73510350 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
73510367 -CATATC
1 TCATATC
73510373 ATTGAAGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.29
17 15 0.71
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.39
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:73510813 original size:44 final size:45
Alignment explanation
Indices: 73510728--73510863 Score: 148
Period size: 45 Copynumber: 3.0 Consensus size: 45
73510718 AGGCGATATT
* * * * *
73510728 TGCTATCTTCGATCTACTCCCCATCTAATACAGAGACGCCAAATC
1 TGCTATCTCCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
** *
73510773 TGCT-TCTTTAATCTGCTCCCCGTCTAATACAAAGATGCCAAATC
1 TGCTATCTCCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
* * * * *
73510817 TGTTATCTCCGATTTGCTCCCCGGCTAATATAGAGATGCCAAATC
1 TGCTATCTCCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
73510862 TG
1 TG
73510864 TCATCTTGGA
Statistics
Matches: 76, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
44 37 0.49
45 39 0.51
ACGTcount: A:0.26, C:0.29, G:0.14, T:0.30
Consensus pattern (45 bp):
TGCTATCTCCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
Found at i:73511043 original size:78 final size:78
Alignment explanation
Indices: 73510893--73511186 Score: 441
Period size: 78 Copynumber: 3.8 Consensus size: 78
73510883 ATGTAAACAC
* *
73510893 ATGAAGGTTAGATCTGTTATGTCTTCGATCTGCTCC-CGTCTAATACAGAGATGCCAAATCATTT
1 ATGAAGGTCAGATCTGTTATGTCTTCGATCTGCTCCTCGTCTAATACAGAGATGCCAAATCATCT
73510957 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* *
73510970 ATGAAGGTCCA-ATCTGTTATGTCTTTGATCTGCTCCTCGTTTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGTTATGTCTTCGATCTGCTCCTCGTCTAATACAGAGATGCCAAATCATC
73511034 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* *
73511048 ATGAAGGTCAGATCTGTTGTGTCTTCGATCTGCTCCTCGTCTAATACAAAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGTTATGTCTTCGATCTGCTCCTCGTCTAATACAGAGATGCCAAATCATCT
*
73511113 TGGATCTGCTTCC
66 TGGATCTGCTTCA
* * * **
73511126 ATGAAGGTCAGATTTGCTATGTCTTCGATCTGCT-CTCCGTCGAATATGGAGATGCCAAATC
1 ATGAAGGTCAGATCTGTTATGTCTTCGATCTGCTCCT-CGTCTAATACAGAGATGCCAAATC
73511187 TGTTTCTTCG
Statistics
Matches: 197, Mismatches: 16, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
77 36 0.18
78 161 0.82
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGTTATGTCTTCGATCTGCTCCTCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:73517046 original size:30 final size:30
Alignment explanation
Indices: 73516999--73517058 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
73516989 TTCCCGAGCC
73516999 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
* * *
73517029 TAGGGGTAAAA-TGGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAGT-GTAATTATGCAAAAGTT
73517059 CGTATTAAGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 1 0.04
30 25 0.96
ACGTcount: A:0.37, C:0.07, G:0.27, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAATTATGCAAAAGTT
Found at i:73517604 original size:46 final size:47
Alignment explanation
Indices: 73517481--73517609 Score: 197
Period size: 47 Copynumber: 2.8 Consensus size: 47
73517471 GGTTGAACAT
* * *
73517481 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAACGC
*
73517528 CTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-AACGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAACGC
* *
73517574 CCGAGCTCTTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73517610 GCAGGTTACA
Statistics
Matches: 75, Mismatches: 7, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
46 36 0.48
47 39 0.52
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.31
Consensus pattern (47 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAACGC
Found at i:73522599 original size:17 final size:19
Alignment explanation
Indices: 73522577--73522611 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
73522567 GATATGATAC
73522577 TAAAAT-TAT-TAAAAAAT
1 TAAAATATATATAAAAAAT
73522594 TAAAATATATATAAAAAA
1 TAAAATATATATAAAAAA
73522612 ATCAGGGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 3 0.19
19 7 0.44
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (19 bp):
TAAAATATATATAAAAAAT
Found at i:73522918 original size:17 final size:19
Alignment explanation
Indices: 73522903--73522974 Score: 114
Period size: 19 Copynumber: 3.9 Consensus size: 19
73522893 AATCATATCT
73522903 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
73522922 TCTAAGATTACA-ATCATA
1 TCTAAGATTGCATATCATA
73522940 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
73522957 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
73522975 TGAAGATTAT
Statistics
Matches: 48, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
17 16 0.33
18 15 0.31
19 17 0.35
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:73522939 original size:18 final size:17
Alignment explanation
Indices: 73522903--73522965 Score: 81
Period size: 17 Copynumber: 3.5 Consensus size: 17
73522893 AATCATATCT
73522903 TCTAAGATTGCATATCATA
1 TCTAAGATT-CA-ATCATA
73522922 TCTAAGATTACAATCATA
1 TCTAAGATT-CAATCATA
**
73522940 TCTAAGATTGTATCATA
1 TCTAAGATTCAATCATA
73522957 TCTAAGATT
1 TCTAAGATT
73522966 GCATATCATT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
17 15 0.37
18 15 0.37
19 11 0.27
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.38
Consensus pattern (17 bp):
TCTAAGATTCAATCATA
Found at i:73522959 original size:35 final size:37
Alignment explanation
Indices: 73522896--73522974 Score: 112
Period size: 35 Copynumber: 2.2 Consensus size: 37
73522886 ATTATAAAAT
73522896 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTA
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTA
*
73522932 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTA
73522967 CATATCAT
1 CATATCAT
73522975 TGAAGATTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
35 21 0.54
36 8 0.21
37 10 0.26
ACGTcount: A:0.37, C:0.16, G:0.09, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTA
Found at i:73522972 original size:14 final size:15
Alignment explanation
Indices: 73522935--73522972 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
73522925 AAGATTACAA
73522935 TCATATCTAAGATTG
1 TCATATCTAAGATTG
73522950 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
73522967 -CATATC
1 TCATATC
73522973 ATTGAAGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.29
17 15 0.71
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.39
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:73523818 original size:16 final size:16
Alignment explanation
Indices: 73523780--73523821 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
73523770 TATAGTGTAT
73523780 TATT-ATTATTAATTTA
1 TATTAATTA-TAATTTA
*
73523796 T-TAAATTATAATTTA
1 TATTAATTATAATTTA
73523811 TATTAATTATA
1 TATTAATTATA
73523822 TTATGAGATT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 9 0.41
16 13 0.59
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
TATTAATTATAATTTA
Found at i:73525145 original size:23 final size:22
Alignment explanation
Indices: 73525118--73525179 Score: 74
Period size: 23 Copynumber: 2.8 Consensus size: 22
73525108 TTTGCTGATC
73525118 GGCACTTTATGTGTCGTATTTCA
1 GGCAC-TTATGTGTCGTATTTCA
**
73525141 GGCACCTCGTGTGTCG--TTTCA
1 GGCA-CTTATGTGTCGTATTTCA
73525162 GGCACTTATGTGTCGTAT
1 GGCACTTATGTGTCGTAT
73525180 ACTGATCAGG
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
20 9 0.28
21 9 0.28
22 1 0.03
23 12 0.38
24 1 0.03
ACGTcount: A:0.15, C:0.21, G:0.26, T:0.39
Consensus pattern (22 bp):
GGCACTTATGTGTCGTATTTCA
Found at i:73526936 original size:30 final size:30
Alignment explanation
Indices: 73526902--73526962 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
73526892 GCTCGAACCA
*
73526902 TCCCAATTTTTTATCGTCTTTTCTAAATTT
1 TCCCAATTTTTTATCATCTTTTCTAAATTT
73526932 TCCCAATTTTTTATCATCTTTTCTAAATTT
1 TCCCAATTTTTTATCATCTTTTCTAAATTT
73526962 T
1 T
73526963 TTGAACTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.21, C:0.20, G:0.02, T:0.57
Consensus pattern (30 bp):
TCCCAATTTTTTATCATCTTTTCTAAATTT
Found at i:73536909 original size:22 final size:22
Alignment explanation
Indices: 73536881--73536925 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
73536871 TCCAATGTCA
73536881 TTCCCCATATGAAATTACTAGC
1 TTCCCCATATGAAATTACTAGC
73536903 TTCCCCATATGAAATTACTAGC
1 TTCCCCATATGAAATTACTAGC
73536925 T
1 T
73536926 AACTTTTCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.31, C:0.27, G:0.09, T:0.33
Consensus pattern (22 bp):
TTCCCCATATGAAATTACTAGC
Found at i:73544857 original size:24 final size:23
Alignment explanation
Indices: 73544830--73544880 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 23
73544820 ACAGATAGGC
73544830 AGAGA-TTTACACACTTACACACAT
1 AGAGATTTTACACAC--ACACACAT
73544854 AGAGATTTTTACACACACACACAT
1 AGAGA-TTTTACACACACACACAT
73544878 AGA
1 AGA
73544881 AAAACACCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
24 16 0.64
26 9 0.36
ACGTcount: A:0.43, C:0.24, G:0.10, T:0.24
Consensus pattern (23 bp):
AGAGATTTTACACACACACACAT
Found at i:73545697 original size:12 final size:12
Alignment explanation
Indices: 73545671--73545746 Score: 66
Period size: 12 Copynumber: 6.3 Consensus size: 12
73545661 TATGTTTTAT
* *
73545671 TTATTTTTATAA
1 TTATTTATATTA
*
73545683 TTATTTATTTTA
1 TTATTTATATTA
73545695 TTATCTTATATTA
1 TTAT-TTATATTA
73545708 -TATGTTAT-TTA
1 TTAT-TTATATTA
* *
73545719 TTGTATATATTA
1 TTATTTATATTA
*
73545731 TTATATATATTA
1 TTATTTATATTA
73545743 TTAT
1 TTAT
73545747 CCTTAACTAT
Statistics
Matches: 53, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
11 6 0.11
12 40 0.75
13 7 0.13
ACGTcount: A:0.32, C:0.01, G:0.03, T:0.64
Consensus pattern (12 bp):
TTATTTATATTA
Found at i:73545890 original size:15 final size:16
Alignment explanation
Indices: 73545822--73545891 Score: 52
Period size: 16 Copynumber: 4.2 Consensus size: 16
73545812 TATATACTTC
*
73545822 TATATTATATATTATA
1 TATATTATTTATTATA
* *
73545838 TAATGATTTTATTTACTATG
1 T-AT-A--TTATTTATTATA
* *
73545858 TAAATTATTTATTTTA
1 TATATTATTTATTATA
73545874 TATATTA-TTATTATA
1 TATATTATTTATTATA
73545889 TAT
1 TAT
73545892 TTTGAAATTA
Statistics
Matches: 41, Mismatches: 9, Indels: 9
0.69 0.15 0.15
Matches are distributed among these distances:
15 10 0.24
16 16 0.39
17 2 0.05
18 2 0.05
19 1 0.02
20 10 0.24
ACGTcount: A:0.37, C:0.01, G:0.03, T:0.59
Consensus pattern (16 bp):
TATATTATTTATTATA
Found at i:73545990 original size:13 final size:14
Alignment explanation
Indices: 73545963--73545995 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
73545953 TTTATTATGT
73545963 ATTATTTTTTCTAA
1 ATTATTTTTTCTAA
73545977 ATTATTTTTT-TAA
1 ATTATTTTTTCTAA
73545990 AGTTAT
1 A-TTAT
73545996 GTTATTATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 4 0.22
14 14 0.78
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.64
Consensus pattern (14 bp):
ATTATTTTTTCTAA
Found at i:73546132 original size:29 final size:31
Alignment explanation
Indices: 73546089--73546163 Score: 91
Period size: 29 Copynumber: 2.5 Consensus size: 31
73546079 TTTAGAATTG
* *
73546089 ATATATTTATATATTATTATTAT-TCT-TAT
1 ATATATTAATGTATTATTATTATCTCTGTAT
73546118 ATATATTAATGTATTATTATTATCTCTGTAT
1 ATATATTAATGTATTATTATTATCTCTGTAT
* *
73546149 GTATATATAAAGTAT
1 ATATAT-TAATGTAT
73546164 CATGCATTAT
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
29 21 0.54
30 3 0.08
31 8 0.21
32 7 0.18
ACGTcount: A:0.36, C:0.04, G:0.05, T:0.55
Consensus pattern (31 bp):
ATATATTAATGTATTATTATTATCTCTGTAT
Found at i:73548423 original size:19 final size:20
Alignment explanation
Indices: 73548390--73548429 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
73548380 ATATGTATAT
73548390 ATAAAATAAAGAAAAT-AAA
1 ATAAAATAAAGAAAATGAAA
73548409 ATAAAATAACA-AAAATGAAA
1 ATAAAATAA-AGAAAATGAAA
73548429 A
1 A
73548430 ATGAACAAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.78, C:0.03, G:0.05, T:0.15
Consensus pattern (20 bp):
ATAAAATAAAGAAAATGAAA
Found at i:73548689 original size:18 final size:16
Alignment explanation
Indices: 73548666--73548705 Score: 62
Period size: 18 Copynumber: 2.4 Consensus size: 16
73548656 AGAGGTTAGG
73548666 TTTTTTTCTTTTTCTTCA
1 TTTTTTTCTTTTT-TT-A
73548684 TTTTTTTCTTTTTTTA
1 TTTTTTTCTTTTTTTA
73548700 TTTTTT
1 TTTTTT
73548706 ATTTTGGGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 7 0.32
17 2 0.09
18 13 0.59
ACGTcount: A:0.05, C:0.10, G:0.00, T:0.85
Consensus pattern (16 bp):
TTTTTTTCTTTTTTTA
Found at i:73551306 original size:26 final size:27
Alignment explanation
Indices: 73551246--73551318 Score: 78
Period size: 26 Copynumber: 2.8 Consensus size: 27
73551236 AGTAAGCCTG
** *
73551246 GCGAGCTATGATTTCTAGTAGATTTTA
1 GCGAGCTATGATAGCTAGTGGATTTTA
* *
73551273 -CGAACTATGATCGCTAGTGGA-TTTA
1 GCGAGCTATGATAGCTAGTGGATTTTA
*
73551298 GCGAGCTATGGTAGCTAGTGG
1 GCGAGCTATGATAGCTAGTGG
73551319 GCTTGGTGAG
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
25 4 0.11
26 34 0.89
ACGTcount: A:0.25, C:0.14, G:0.29, T:0.33
Consensus pattern (27 bp):
GCGAGCTATGATAGCTAGTGGATTTTA
Found at i:73553914 original size:13 final size:13
Alignment explanation
Indices: 73553898--73553928 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
73553888 ATTATTATGC
73553898 TATTTATTTATCT
1 TATTTATTTATCT
*
73553911 TATTTATTTATTT
1 TATTTATTTATCT
73553924 TATTT
1 TATTT
73553929 GACTTGGGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (13 bp):
TATTTATTTATCT
Found at i:73555251 original size:18 final size:18
Alignment explanation
Indices: 73555225--73555259 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
73555215 TAAATATTTT
*
73555225 TTTAAATCTATTAAATAC
1 TTTAAATCTATAAAATAC
*
73555243 TTTATATCTATAAAATA
1 TTTAAATCTATAAAATA
73555260 TTAATTATAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.09, G:0.00, T:0.46
Consensus pattern (18 bp):
TTTAAATCTATAAAATAC
Found at i:73555295 original size:13 final size:13
Alignment explanation
Indices: 73555277--73555361 Score: 71
Period size: 13 Copynumber: 6.1 Consensus size: 13
73555267 TAAAAAATAG
73555277 TATATATTATTTT
1 TATATATTATTTT
73555290 TATATATTATTTAT
1 TATATATTATTT-T
*
73555304 TATATTATTTTTTACT
1 TATA-TATTATTT--T
* * *
73555320 TATAAATTGTATT
1 TATATATTATTTT
*
73555333 TATTTATATATTTT
1 TATATAT-TATTTT
73555347 ATATATATTATTTT
1 -TATATATTATTTT
73555361 T
1 T
73555362 TAAAAAAAAT
Statistics
Matches: 57, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
13 19 0.33
14 15 0.26
15 18 0.32
16 5 0.09
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.66
Consensus pattern (13 bp):
TATATATTATTTT
Found at i:73555385 original size:49 final size:49
Alignment explanation
Indices: 73555267--73555388 Score: 121
Period size: 46 Copynumber: 2.5 Consensus size: 49
73555257 ATATTAATTA
* *
73555267 TAAAAAATAGTATATATTATT-TTTATATATTATTTATTATATTATTTTT
1 TAAAAAA-AATATGTATTATTATTTATATATTATTTATTATATTATTTTT
** *
73555316 TACTTATAAAT-TGTA-T-TTATTTATATA-T-TTTATATATATTATTTTT
1 TA-AAAAAAATATGTATTATTATTTATATATTATTTAT-TATATTATTTTT
73555362 TAAAAAAAATTATGTATTATTATTTAT
1 TAAAAAAAA-TATGTATTATTATTTAT
73555389 TAATTGTGTA
Statistics
Matches: 58, Mismatches: 8, Indels: 14
0.73 0.10 0.17
Matches are distributed among these distances:
45 9 0.16
46 18 0.31
47 13 0.22
48 4 0.07
49 12 0.21
50 2 0.03
ACGTcount: A:0.39, C:0.01, G:0.02, T:0.58
Consensus pattern (49 bp):
TAAAAAAAATATGTATTATTATTTATATATTATTTATTATATTATTTTT
Found at i:73560740 original size:33 final size:33
Alignment explanation
Indices: 73560694--73560760 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
73560684 ATATAGGTGA
73560694 TTGTGGATCGCCTTACAAATAGTTCACACTTTT
1 TTGTGGATCGCCTTACAAATAGTTCACACTTTT
*
73560727 TTGTGGATTGCCTTACAAATAGTTCACACTTTT
1 TTGTGGATCGCCTTACAAATAGTTCACACTTTT
73560760 T
1 T
73560761 AGTAGTTCGC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.24, C:0.19, G:0.15, T:0.42
Consensus pattern (33 bp):
TTGTGGATCGCCTTACAAATAGTTCACACTTTT
Found at i:73564888 original size:46 final size:45
Alignment explanation
Indices: 73564833--73564921 Score: 144
Period size: 46 Copynumber: 2.0 Consensus size: 45
73564823 TTTGGATAAT
*
73564833 GATTAAGACAGATCTCAAAGATTGAAAGT-AATTTAGAATATTAGA
1 GATTAAGACACATCTCAAAGATTGAAAGTAAATTT-GAATATTAGA
73564878 GATTAAAGACACATCTCAAAGATTGAAAGTAAATTTGAATATTA
1 GATT-AAGACACATCTCAAAGATTGAAAGTAAATTTGAATATTA
73564922 AAGTTTACTT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
45 4 0.10
46 32 0.78
47 5 0.12
ACGTcount: A:0.47, C:0.08, G:0.16, T:0.29
Consensus pattern (45 bp):
GATTAAGACACATCTCAAAGATTGAAAGTAAATTTGAATATTAGA
Found at i:73565811 original size:19 final size:20
Alignment explanation
Indices: 73565767--73565811 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
73565757 TGTCCCTTGT
*
73565767 TATATATATATTAGAACTTG
1 TATATATATATTAGAACTTC
73565787 TA-ATATATATTA-AGA-TTC
1 TATATATATATTAGA-ACTTC
73565805 TATATAT
1 TATATAT
73565812 TTAGGGTGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
18 5 0.23
19 15 0.68
20 2 0.09
ACGTcount: A:0.42, C:0.04, G:0.07, T:0.47
Consensus pattern (20 bp):
TATATATATATTAGAACTTC
Found at i:73566208 original size:15 final size:15
Alignment explanation
Indices: 73566188--73566219 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
73566178 TTTAATTTAG
73566188 AAGATAAATATAAAT
1 AAGATAAATATAAAT
*
73566203 AAGATAAATATATAT
1 AAGATAAATATAAAT
73566218 AA
1 AA
73566220 ATTATTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (15 bp):
AAGATAAATATAAAT
Found at i:73566244 original size:37 final size:39
Alignment explanation
Indices: 73566194--73566276 Score: 143
Period size: 39 Copynumber: 2.2 Consensus size: 39
73566184 TTAGAAGATA
73566194 AATATAAATAAGAT-AA-ATATATATAAATTATTATTTT
1 AATATAAATAAGATAAATATATATATAAATTATTATTTT
73566231 AATATAAATAAGATAAATATATATATAAATTATTATTTT
1 AATATAAATAAGATAAATATATATATAAATTATTATTTT
*
73566270 AAAATAA
1 AATATAA
73566277 TATATATCAA
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
37 14 0.33
38 2 0.05
39 27 0.63
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (39 bp):
AATATAAATAAGATAAATATATATATAAATTATTATTTT
Found at i:73568685 original size:38 final size:39
Alignment explanation
Indices: 73568643--73568716 Score: 114
Period size: 39 Copynumber: 1.9 Consensus size: 39
73568633 AGGTAGAAAA
* * *
73568643 CTTAAATTTGTTATT-TTCATGGTTATTTGATATCTACT
1 CTTAAATTTGTTATTCTGCATGATTATTTGAGATCTACT
73568681 CTTAAATTTGTTATTCTGCATGATTATTTGAGATCT
1 CTTAAATTTGTTATTCTGCATGATTATTTGAGATCT
73568717 GCTTCTGTCA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
38 15 0.47
39 17 0.53
ACGTcount: A:0.24, C:0.11, G:0.12, T:0.53
Consensus pattern (39 bp):
CTTAAATTTGTTATTCTGCATGATTATTTGAGATCTACT
Found at i:73570072 original size:106 final size:106
Alignment explanation
Indices: 73569806--73570242 Score: 685
Period size: 106 Copynumber: 4.2 Consensus size: 106
73569796 ATTTTAAAAT
* *
73569806 TTTTATTTT-ATTTTTAAATTACCGAATTAAATTAAAATGTATTTAAAGTTTTATTTTGAATATT
1 TTTTATTTTAATTTTTAAATTACCTAATTAAATTAAAATGTATTTAAAGTTTTATTTTAAATATT
*
73569870 TTATTTGATTTTAATTTAATCAC-AGAAAATATTTTGTCTAC
66 TTACTTGATTTTAATTTAATCACTA-AAAATATTTTGTCTAC
* *
73569911 ---T-TTTT--TTTTTAAATTACCTAATTAAATTAAATTGTCTTTAAAGTTTTATTTTAAATATT
1 TTTTATTTTAATTTTTAAATTACCTAATTAAATTAAAATGTATTTAAAGTTTTATTTTAAATATT
73569970 TTACTTGATTTTAATTTAATCACTAAAAATATTTTGTCTAC
66 TTACTTGATTTTAATTTAATCACTAAAAATATTTTGTCTAC
* *
73570011 TTTTATTTTAATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAATTTTTATTTTAAATATT
1 TTTTATTTTAATTTTTAAATTACCTAATTAAATTAAAATGTATTTAAAGTTTTATTTTAAATATT
*
73570076 TTA-TTGGATTTTAATTTAATCACGAAAAATATTTTGTCTAC
66 TTACTT-GATTTTAATTTAATCACTAAAAATATTTTGTCTAC
* * *
73570117 TTTTATTTTATTTTTTAAATTACCTAACTAAATTAAAATGTCTTTAAAGTTTTATTTTAAATATT
1 TTTTATTTTAATTTTTAAATTACCTAATTAAATTAAAATGTATTTAAAGTTTTATTTTAAATATT
73570182 TTACTTGATTTTAATTTAATCACTAAAAATATTTTGTCTAC
66 TTACTTGATTTTAATTTAATCACTAAAAATATTTTGTCTAC
*
73570223 TTTTATTTTATTTTTTAAAT
1 TTTTATTTTAATTTTTAAAT
73570243 ATTTTATTTT
Statistics
Matches: 309, Mismatches: 14, Indels: 17
0.91 0.04 0.05
Matches are distributed among these distances:
100 88 0.28
101 5 0.02
102 1 0.00
103 1 0.00
104 4 0.01
105 2 0.01
106 206 0.67
107 2 0.01
ACGTcount: A:0.35, C:0.07, G:0.05, T:0.54
Consensus pattern (106 bp):
TTTTATTTTAATTTTTAAATTACCTAATTAAATTAAAATGTATTTAAAGTTTTATTTTAAATATT
TTACTTGATTTTAATTTAATCACTAAAAATATTTTGTCTAC
Found at i:73570295 original size:19 final size:18
Alignment explanation
Indices: 73570273--73570313 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
73570263 TAAAATAATT
73570273 AATTAACCCTAAACTTGTA
1 AATTAA-CCTAAACTTGTA
*
73570292 AATTTAATCTAAACTTGTA
1 AA-TTAACCTAAACTTGTA
73570311 AAT
1 AAT
73570314 AATTAATCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 1 0.05
19 15 0.75
20 4 0.20
ACGTcount: A:0.44, C:0.15, G:0.05, T:0.37
Consensus pattern (18 bp):
AATTAACCTAAACTTGTA
Found at i:73570439 original size:74 final size:74
Alignment explanation
Indices: 73570348--73570755 Score: 683
Period size: 74 Copynumber: 5.5 Consensus size: 74
73570338 CATCAACAAC
* * * ** *
73570348 TTACATAACTTATATAATACATAAATATATATCATATCTTACATAATTTACATAAGAT-AAACAA
1 TTACATAACTTACATAATACATAAATATATATCATATCGTACATAATTTACATAA-TTCGGATAA
73570412 CTTACATAAT
65 CTTACATAAT
* * *
73570422 TTACATAACTTACATAATACATAAGTATATATTATATCGTACATAATTTACATAATTCGGATAGC
1 TTACATAACTTACATAATACATAAATATATATCATATCGTACATAATTTACATAATTCGGATAAC
73570487 TTACATAAT
66 TTACATAAT
* *
73570496 TTACATAACTTTCATAATACATAAATATATATCATATCATACATAATTTACATAATTCGGATAAC
1 TTACATAACTTACATAATACATAAATATATATCATATCGTACATAATTTACATAATTCGGATAAC
73570561 TTACATAAT
66 TTACATAAT
* *
73570570 TTACATAACTTACATAATACATAAATATATATCATATCGTGCATAATTTACATAATTCAGATAAC
1 TTACATAACTTACATAATACATAAATATATATCATATCGTACATAATTTACATAATTCGGATAAC
73570635 TTACATAAT
66 TTACATAAT
73570644 TTACATAACTTACATAATACATAAATATATATCATATCGTACATAATTTACATAATTCGGATAAC
1 TTACATAACTTACATAATACATAAATATATATCATATCGTACATAATTTACATAATTCGGATAAC
73570709 TTACATAAT
66 TTACATAAT
73570718 TTACATAACTTACATAATACATAAATATATATCATATC
1 TTACATAACTTACATAATACATAAATATATATCATATC
73570756 ATAACTTACA
Statistics
Matches: 313, Mismatches: 20, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
73 1 0.00
74 312 1.00
ACGTcount: A:0.45, C:0.14, G:0.03, T:0.37
Consensus pattern (74 bp):
TTACATAACTTACATAATACATAAATATATATCATATCGTACATAATTTACATAATTCGGATAAC
TTACATAAT
Found at i:73576231 original size:21 final size:21
Alignment explanation
Indices: 73576178--73576235 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 21
73576168 ACAACTTAGA
* *
73576178 GCAGAGGCAGCAGAGAGGGAG
1 GCAGAGGCAGCAGCGAGAGAG
* *
73576199 GCAGCGGTAGCAGCGAGAGAG
1 GCAGAGGCAGCAGCGAGAGAG
*
73576220 GCTGAGGCAGCAGCGA
1 GCAGAGGCAGCAGCGA
73576236 TGGCAGTAGA
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.29, C:0.19, G:0.48, T:0.03
Consensus pattern (21 bp):
GCAGAGGCAGCAGCGAGAGAG
Found at i:73578155 original size:7 final size:6
Alignment explanation
Indices: 73578134--73578166 Score: 57
Period size: 6 Copynumber: 5.3 Consensus size: 6
73578124 CTAAATTAAT
73578134 AAAATA AAAATA AAAATA AAAATA AATAATA AA
1 AAAATA AAAATA AAAATA AAAATA AA-AATA AA
73578167 GCAAAATAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 20 0.77
7 6 0.23
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (6 bp):
AAAATA
Found at i:73580729 original size:127 final size:127
Alignment explanation
Indices: 73580485--73580738 Score: 400
Period size: 127 Copynumber: 2.0 Consensus size: 127
73580475 TCCTCCAACC
* * * *
73580485 TATGAAACTCAAAGGCTAAGTACATGATTAATAATTACATTAATAACCAAATACATGCATCTAAT
1 TATGAAACTCAAAGACTAAGCACATGATTAATAATTACATTAATAACCAAATAAATACATCTAAT
* *
73580550 CTTACATACATAATTTCAAAATTCATACTTAATTAATTAAATACATGTAATTAATGTTCATT
66 CTTACATACATAATTTCAAAATTCATACTTAATTAATTAAATACATGCAATTAATATTCATT
* * * *
73580612 TATGTAACTGAAAGACTAAGCACATGATTAATAATTACATTAATGACCAAATAAATACATTTAAT
1 TATGAAACTCAAAGACTAAGCACATGATTAATAATTACATTAATAACCAAATAAATACATCTAAT
* *
73580677 CTTGCATGCATAATTTCAAAATTCATACTTAATTAATTAAATACATGCAATTAATATTCATT
66 CTTACATACATAATTTCAAAATTCATACTTAATTAATTAAATACATGCAATTAATATTCATT
73580739 CATGCACTAA
Statistics
Matches: 115, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
127 115 1.00
ACGTcount: A:0.44, C:0.14, G:0.07, T:0.35
Consensus pattern (127 bp):
TATGAAACTCAAAGACTAAGCACATGATTAATAATTACATTAATAACCAAATAAATACATCTAAT
CTTACATACATAATTTCAAAATTCATACTTAATTAATTAAATACATGCAATTAATATTCATT
Found at i:73581852 original size:10 final size:10
Alignment explanation
Indices: 73581797--73581860 Score: 51
Period size: 10 Copynumber: 6.1 Consensus size: 10
73581787 AAATATATTT
73581797 ATAATTTCTT-
1 ATAATTT-TTA
73581807 ATAATTTTTA
1 ATAATTTTTA
*
73581817 ATCATTTTTA
1 ATAATTTTTA
*
73581827 GATAGCTTTTCT-
1 -ATA-ATTTT-TA
73581839 ATAATTTTTA
1 ATAATTTTTA
73581849 ATAATTATTTA
1 ATAATT-TTTA
73581860 A
1 A
73581861 AAAACTACTT
Statistics
Matches: 44, Mismatches: 4, Indels: 11
0.75 0.07 0.19
Matches are distributed among these distances:
9 3 0.07
10 26 0.59
11 10 0.23
12 4 0.09
13 1 0.02
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.56
Consensus pattern (10 bp):
ATAATTTTTA
Found at i:73583993 original size:21 final size:23
Alignment explanation
Indices: 73583967--73584010 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
73583957 TTAAAAAAAT
73583967 ATATTT-ATA-ATATTTTATTTA
1 ATATTTAATATATATTTTATTTA
*
73583988 ATATTTAATATATTTTTTATTTA
1 ATATTTAATATATATTTTATTTA
73584011 TTGAAATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 6 0.30
22 3 0.15
23 11 0.55
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (23 bp):
ATATTTAATATATATTTTATTTA
Found at i:73584550 original size:7 final size:7
Alignment explanation
Indices: 73584538--73584566 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
73584528 AACATCTATT
73584538 AGCTAAA
1 AGCTAAA
73584545 AGCTAAA
1 AGCTAAA
73584552 AGCTAAA
1 AGCTAAA
73584559 AGCTAAA
1 AGCTAAA
73584566 A
1 A
73584567 TTAATATGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.59, C:0.14, G:0.14, T:0.14
Consensus pattern (7 bp):
AGCTAAA
Found at i:73584631 original size:34 final size:34
Alignment explanation
Indices: 73584588--73584655 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
73584578 TGTAGAGAGA
73584588 AATGGAACCATAAACACTAGTACTAAAATTTAAG
1 AATGGAACCATAAACACTAGTACTAAAATTTAAG
73584622 AATGGAACCATAAACACTAGTACTAAAATTTAAG
1 AATGGAACCATAAACACTAGTACTAAAATTTAAG
73584656 TATCCCACCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.50, C:0.15, G:0.12, T:0.24
Consensus pattern (34 bp):
AATGGAACCATAAACACTAGTACTAAAATTTAAG
Found at i:73584666 original size:34 final size:34
Alignment explanation
Indices: 73584593--73584666 Score: 112
Period size: 34 Copynumber: 2.2 Consensus size: 34
73584583 AGAGAAATGG
**
73584593 AACCATAAACACTAGTACTAAAATTTAAGAATGG
1 AACCATAAACACTAGTACTAAAATTTAAGAATCC
*
73584627 AACCATAAACACTAGTACTAAAATTTAAGTATCC
1 AACCATAAACACTAGTACTAAAATTTAAGAATCC
*
73584661 CACCAT
1 AACCAT
73584667 TGAATTAAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.47, C:0.20, G:0.08, T:0.24
Consensus pattern (34 bp):
AACCATAAACACTAGTACTAAAATTTAAGAATCC
Found at i:73584820 original size:21 final size:21
Alignment explanation
Indices: 73584796--73584838 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
73584786 TAAAGATCTA
73584796 TTCCATCACATCCATCATATC
1 TTCCATCACATCCATCATATC
73584817 TTCCATCACATCCATCATATC
1 TTCCATCACATCCATCATATC
73584838 T
1 T
73584839 CAAATGGCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.37, G:0.00, T:0.35
Consensus pattern (21 bp):
TTCCATCACATCCATCATATC
Found at i:73585071 original size:104 final size:104
Alignment explanation
Indices: 73584891--73585100 Score: 420
Period size: 104 Copynumber: 2.0 Consensus size: 104
73584881 CTCTCTCAGC
73584891 CAATCACGCCGCCCAAAACCTTACAAAACAGGAAGGGCCATTGTTAGTTAGGGGCTGCCTACGGA
1 CAATCACGCCGCCCAAAACCTTACAAAACAGGAAGGGCCATTGTTAGTTAGGGGCTGCCTACGGA
73584956 GTCCTCAAGGCCTCTTGCCTATACAAACACCCTCTTCCT
66 GTCCTCAAGGCCTCTTGCCTATACAAACACCCTCTTCCT
73584995 CAATCACGCCGCCCAAAACCTTACAAAACAGGAAGGGCCATTGTTAGTTAGGGGCTGCCTACGGA
1 CAATCACGCCGCCCAAAACCTTACAAAACAGGAAGGGCCATTGTTAGTTAGGGGCTGCCTACGGA
73585060 GTCCTCAAGGCCTCTTGCCTATACAAACACCCTCTTCCT
66 GTCCTCAAGGCCTCTTGCCTATACAAACACCCTCTTCCT
73585099 CA
1 CA
73585101 GGAAGAGGGG
Statistics
Matches: 106, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
104 106 1.00
ACGTcount: A:0.27, C:0.33, G:0.19, T:0.21
Consensus pattern (104 bp):
CAATCACGCCGCCCAAAACCTTACAAAACAGGAAGGGCCATTGTTAGTTAGGGGCTGCCTACGGA
GTCCTCAAGGCCTCTTGCCTATACAAACACCCTCTTCCT
Found at i:73589742 original size:22 final size:22
Alignment explanation
Indices: 73589712--73589763 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
73589702 CAGTAAGCGC
*
73589712 CTCTTGACTAACCATGAAGTCA
1 CTCTCGACTAACCATGAAGTCA
73589734 CTCTCGACTAACCATGAAGTCA
1 CTCTCGACTAACCATGAAGTCA
73589756 CTCTCGAC
1 CTCTCGAC
73589764 CAGGCTATCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.29, C:0.33, G:0.13, T:0.25
Consensus pattern (22 bp):
CTCTCGACTAACCATGAAGTCA
Found at i:73604066 original size:31 final size:31
Alignment explanation
Indices: 73604028--73604088 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
73604018 AAAGATCTCT
73604028 CAAATATGGATGTTTTTTATGAAGAATCATA
1 CAAATATGGATGTTTTTTATGAAGAATCATA
73604059 CAAATATGGATGTTTTTTATGAAGAATCAT
1 CAAATATGGATGTTTTTTATGAAGAATCAT
73604089 TTGCTGAAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.38, C:0.07, G:0.16, T:0.39
Consensus pattern (31 bp):
CAAATATGGATGTTTTTTATGAAGAATCATA
Found at i:73604377 original size:22 final size:22
Alignment explanation
Indices: 73604349--73604394 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
73604339 TCACATTCAT
73604349 TATTTAGGAATTAGAAAGTATA
1 TATTTAGGAATTAGAAAGTATA
73604371 TATTTAGGAATTAGAAAGTATA
1 TATTTAGGAATTAGAAAGTATA
73604393 TA
1 TA
73604395 GAAATGAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.46, C:0.00, G:0.17, T:0.37
Consensus pattern (22 bp):
TATTTAGGAATTAGAAAGTATA
Found at i:73607865 original size:33 final size:33
Alignment explanation
Indices: 73607799--73607875 Score: 102
Period size: 34 Copynumber: 2.3 Consensus size: 33
73607789 TACTTTTTAC
73607799 ATTATTTTTAAATTTATTTATTATTTATATTCT
1 ATTATTTTTAAATTTATTTATTATTTATATTCT
* * *
73607832 ATTTATTTTTAATTTTATTTA-TGTTTATTTTCT
1 A-TTATTTTTAAATTTATTTATTATTTATATTCT
73607865 ATTATTGTTTA
1 ATTATT-TTTA
73607876 TATATATTGT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
32 5 0.13
33 16 0.41
34 18 0.46
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.69
Consensus pattern (33 bp):
ATTATTTTTAAATTTATTTATTATTTATATTCT
Found at i:73607869 original size:16 final size:17
Alignment explanation
Indices: 73607822--73607876 Score: 60
Period size: 16 Copynumber: 3.3 Consensus size: 17
73607812 TTATTTATTA
* *
73607822 TTTATATTCTATTTATT
1 TTTATTTTCTATTTATG
*
73607839 TTTAATTT-TATTTATG
1 TTTATTTTCTATTTATG
73607855 TTTATTTTCTA-TTATTG
1 TTTATTTTCTATTTA-TG
73607872 TTTAT
1 TTTAT
73607877 ATATATTGTT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
16 17 0.53
17 15 0.47
ACGTcount: A:0.22, C:0.04, G:0.04, T:0.71
Consensus pattern (17 bp):
TTTATTTTCTATTTATG
Found at i:73607873 original size:17 final size:17
Alignment explanation
Indices: 73607816--73607876 Score: 56
Period size: 17 Copynumber: 3.6 Consensus size: 17
73607806 TTAAATTTAT
* *
73607816 TTATTATTTATATTCTA
1 TTATTGTTTATTTTCTA
*
73607833 TTTATT-TTTAATTT-TA
1 -TTATTGTTTATTTTCTA
73607849 TT-TATGTTTATTTTCTA
1 TTAT-TGTTTATTTTCTA
73607866 TTATTGTTTAT
1 TTATTGTTTAT
73607877 ATATATTGTT
Statistics
Matches: 36, Mismatches: 3, Indels: 9
0.75 0.06 0.19
Matches are distributed among these distances:
14 1 0.03
15 3 0.08
16 9 0.25
17 17 0.47
18 6 0.17
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.70
Consensus pattern (17 bp):
TTATTGTTTATTTTCTA
Found at i:73623564 original size:178 final size:178
Alignment explanation
Indices: 73623292--73623725 Score: 577
Period size: 178 Copynumber: 2.4 Consensus size: 178
73623282 CAAAGACAAT
** * * * *
73623292 GAATCTTATCTTCCCGAGGTAGCAGGAGAGTAGATTTTAGCCACCAGCCTTATTTCTCTGAGGTA
1 GAATCTTATCTTATCGAGGTAGCAGGAGAGCAGATTTTAGTCATCAGCCTTATCTCTCTGAGGTA
* * * * * * * *
73623357 GCAAAGGAGTAGGTTGAAGGTTGTAGTCTTATCTTCTTAAGGTAGTAAGGGAGCAGACTGAAGAT
66 GCAAGGGAGCAGGCTGAAGATTATAGTCTTATCTTCCTAAGGTAGTAAAGGAGCAGACTAAAGAT
* *
73623422 TGTAGATTTTGTCTCCTCGAGATATCAGTAGGGCAGATCGAAAGTGGC
131 TGTAGATTTTGTCTCCTCGAGACAGCAGTAGGGCAGATCGAAAGTGGC
* * *
73623470 GACTCTTATCTTATCGAAGTAGCAGGAGAGCCGATTTTAGTCATCAGCCTTATCTCTCTGAGGTA
1 GAATCTTATCTTATCGAGGTAGCAGGAGAGCAGATTTTAGTCATCAGCCTTATCTCTCTGAGGTA
*
73623535 GCAAGGGAGCAGGCTGAAGATTATAGTCTTATCTTCCTGAGGTAGTAAAGGAGCAGACTAAAGAT
66 GCAAGGGAGCAGGCTGAAGATTATAGTCTTATCTTCCTAAGGTAGTAAAGGAGCAGACTAAAGAT
*
73623600 TGTAGATTTTGTCTCCTCGAGACAGCAGTGGGGCAGATCGAAAGTGGC
131 TGTAGATTTTGTCTCCTCGAGACAGCAGTAGGGCAGATCGAAAGTGGC
* * * * *
73623648 GAATCTTATC-TACTCGAGGTAGCAGGCA-AACAGATTTAATTCATCAACCTTATCTCTCTAAGG
1 GAATCTTATCTTA-TCGAGGTAGCAGG-AGAGCAGATTTTAGTCATCAGCCTTATCTCTCTGAGG
*
73623711 TTGC-AGTGGAGCAGG
64 TAGCAAG-GGAGCAGG
73623726 TTCAAATCAC
Statistics
Matches: 223, Mismatches: 30, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
177 4 0.02
178 218 0.98
179 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.28
Consensus pattern (178 bp):
GAATCTTATCTTATCGAGGTAGCAGGAGAGCAGATTTTAGTCATCAGCCTTATCTCTCTGAGGTA
GCAAGGGAGCAGGCTGAAGATTATAGTCTTATCTTCCTAAGGTAGTAAAGGAGCAGACTAAAGAT
TGTAGATTTTGTCTCCTCGAGACAGCAGTAGGGCAGATCGAAAGTGGC
Found at i:73625551 original size:28 final size:25
Alignment explanation
Indices: 73625530--73625578 Score: 71
Period size: 26 Copynumber: 1.9 Consensus size: 25
73625520 TATTTAAAAT
73625530 AATTTTATATACATCATTTATTCTAA
1 AATTTTATATACATCATTTATT-TAA
* *
73625556 AATTTTATATATATTATTTATTT
1 AATTTTATATACATCATTTATTT
73625579 TAGATTTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 1 0.05
26 20 0.95
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.57
Consensus pattern (25 bp):
AATTTTATATACATCATTTATTTAA
Found at i:73628963 original size:22 final size:23
Alignment explanation
Indices: 73628938--73629033 Score: 83
Period size: 23 Copynumber: 4.2 Consensus size: 23
73628928 ACAAATACAT
* *
73628938 GAGCACATAAGTGCTAAA-TCAG
1 GAGCACAAAAGTGCTAAATTCAA
73628960 GAGCACAAAAGTGCTAAATTCAA
1 GAGCACAAAAGTGCTAAATTCAA
*
73628983 GAGCA-AGGAAA-TGCTAACTTCACA
1 GAGCACA--AAAGTGCTAAATTCA-A
* * *
73629007 -AGCACCAGAGTGCTAAATTCAC
1 GAGCACAAAAGTGCTAAATTCAA
73629029 GAGCA
1 GAGCA
73629034 TGCTATGGTA
Statistics
Matches: 60, Mismatches: 7, Indels: 13
0.75 0.09 0.16
Matches are distributed among these distances:
22 20 0.33
23 36 0.60
24 4 0.07
ACGTcount: A:0.42, C:0.21, G:0.21, T:0.17
Consensus pattern (23 bp):
GAGCACAAAAGTGCTAAATTCAA
Found at i:73629854 original size:13 final size:13
Alignment explanation
Indices: 73629836--73629860 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73629826 TCATCATTAT
73629836 TATAATAATAAAA
1 TATAATAATAAAA
73629849 TATAATAATAAA
1 TATAATAATAAA
73629861 TATTATAACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (13 bp):
TATAATAATAAAA
Found at i:73631492 original size:16 final size:16
Alignment explanation
Indices: 73631468--73631500 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
73631458 ATTACATGTC
73631468 AAATCTTAAGGCTTGA
1 AAATCTTAAGGCTTGA
*
73631484 AAATTTTAAGGCTTGA
1 AAATCTTAAGGCTTGA
73631500 A
1 A
73631501 TTAGGGAGAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.09, G:0.18, T:0.33
Consensus pattern (16 bp):
AAATCTTAAGGCTTGA
Found at i:73639152 original size:30 final size:32
Alignment explanation
Indices: 73639116--73639194 Score: 126
Period size: 32 Copynumber: 2.5 Consensus size: 32
73639106 TATATTTTCT
73639116 GTACTTGGCTAGGTTTTCTT-TTT-AAGAACA
1 GTACTTGGCTAGGTTTTCTTCTTTAAAGAACA
*
73639146 GTACTTGGCTAGGTTTTTTTCTTTAAAGAACA
1 GTACTTGGCTAGGTTTTCTTCTTTAAAGAACA
*
73639178 GTATTTGGCTAGGTTTT
1 GTACTTGGCTAGGTTTT
73639195 ATTAATCATA
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
30 19 0.42
31 3 0.07
32 23 0.51
ACGTcount: A:0.22, C:0.11, G:0.22, T:0.46
Consensus pattern (32 bp):
GTACTTGGCTAGGTTTTCTTCTTTAAAGAACA
Found at i:73640379 original size:22 final size:22
Alignment explanation
Indices: 73640330--73640380 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
73640320 TTAAGGTTAC
*
73640330 ATCATAGTGATTTTCTTTATAA
1 ATCATGGTGATTTTCTTTATAA
73640352 ATCATGGTGATTTTCTTTATAA
1 ATCATGGTGATTTTCTTTATAA
73640374 ATCATGG
1 ATCATGG
73640381 AATCTAAGCG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.29, C:0.10, G:0.14, T:0.47
Consensus pattern (22 bp):
ATCATGGTGATTTTCTTTATAA
Found at i:73647334 original size:27 final size:27
Alignment explanation
Indices: 73647304--73647449 Score: 211
Period size: 27 Copynumber: 5.4 Consensus size: 27
73647294 ATTACCAAAG
*
73647304 TACCCTCAATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
73647331 TACCCTTGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
73647358 TACTCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * *
73647385 TACCCTCAATTTACAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
73647412 TACCCTTGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
73647439 TACCCTCGATT
1 TACCCTCGATT
73647450 ACAAAATTAC
Statistics
Matches: 107, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 107 1.00
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCGTTT
Found at i:73647468 original size:26 final size:27
Alignment explanation
Indices: 73647439--73647522 Score: 89
Period size: 27 Copynumber: 3.1 Consensus size: 27
73647429 ATTACCGTTT
*
73647439 TACCC-TCGATTACAAAATTACTAAAA
1 TACCCTTCGATTACAAAATTACCAAAA
* *
73647465 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTCGATTACAAAATTACCAAAA
* * * **
73647492 TACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCTTCGATTACAAAATTACCAAAA
73647519 TACC
1 TACC
73647523 ACTGGTTTGT
Statistics
Matches: 50, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
26 5 0.10
27 45 0.90
ACGTcount: A:0.42, C:0.24, G:0.06, T:0.29
Consensus pattern (27 bp):
TACCCTTCGATTACAAAATTACCAAAA
Found at i:73647478 original size:53 final size:54
Alignment explanation
Indices: 73647281--73647488 Score: 166
Period size: 54 Copynumber: 3.9 Consensus size: 54
73647271 CTAAAATGTT
** * ** * *
73647281 CTCAATTTGTAAAATTACCAAAGTACCCTCAATTTATAGAATTACCGTTTTACC
1 CTCAATTTACAAAATTACCAAAATACCCTTGATTTACAGAATTACCATTTTACC
** * * **** * * *
73647335 CTTGATTTATAGAATTACCGTTTTACTCTCGATTTATAGAATTACCATTTTACC
1 CTCAATTTACAAAATTACCAAAATACCCTTGATTTACAGAATTACCATTTTACC
* *** *
73647389 CTCAATTTACAGAATTACCATTTTACCCTTGATTTACAGAATTACCGTTTTACC
1 CTCAATTTACAAAATTACCAAAATACCCTTGATTTACAGAATTACCATTTTACC
* * * *
73647443 CTCGA-TTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCA
1 CTCAATTTACAAAATTACCAAAATACCCTTGATTTACAGAATTACCA
73647489 AAATACCCCT
Statistics
Matches: 126, Mismatches: 28, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
53 33 0.26
54 93 0.74
ACGTcount: A:0.33, C:0.22, G:0.08, T:0.38
Consensus pattern (54 bp):
CTCAATTTACAAAATTACCAAAATACCCTTGATTTACAGAATTACCATTTTACC
Found at i:73647485 original size:27 final size:27
Alignment explanation
Indices: 73647448--73647667 Score: 135
Period size: 27 Copynumber: 8.1 Consensus size: 27
73647438 TTACCCTCGA
73647448 TTACAAAATTACTAAAATACCCTTGGT
1 TTACAAAATTACTAAAATACCCTTGGT
* * *
73647475 TTACAAAATTACCAAAATACCCCTAGT
1 TTACAAAATTACTAAAATACCCTTGGT
** *
73647502 TTGTAAAATTACCAAAATACCAC-TGGT
1 TTACAAAATTACTAAAATACC-CTTGGT
*** * ***
73647529 TTGTGAAATTA-TCGAAATACCCTCAAT
1 TTACAAAATTACT-AAAATACCCTTGGT
** * * **
73647556 TTGTAAAATTACCAAAATACCCCTAAT
1 TTACAAAATTACTAAAATACCCTTGGT
*
73647583 TTACAAAATTAC-AGAAATACCCTTGACT
1 TTACAAAATTACTA-AAATACCCTTG-GT
*
73647611 TT-CTAAAAATTA-TAGAAATACCATTGGT
1 TTAC--AAAATTACTA-AAATACCCTTGGT
* *
73647639 TTACAAAATTACTGAAATACCTTTGGT
1 TTACAAAATTACTAAAATACCCTTGGT
73647666 TT
1 TT
73647668 GTAGATTTAC
Statistics
Matches: 156, Mismatches: 26, Indels: 22
0.76 0.13 0.11
Matches are distributed among these distances:
26 2 0.01
27 126 0.81
28 8 0.05
29 20 0.13
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.32
Consensus pattern (27 bp):
TTACAAAATTACTAAAATACCCTTGGT
Found at i:73647529 original size:54 final size:55
Alignment explanation
Indices: 73647452--73647659 Score: 183
Period size: 54 Copynumber: 3.8 Consensus size: 55
73647442 CCTCGATTAC
*
73647452 AAAATTACTAAAATACC-CTTGGTTTACAAAATTACCAAAATACCCCT-AGTTTGT
1 AAAATTACCAAAATACCAC-TGGTTTACAAAATTACCAAAATACCCCTCAGTTTGT
*** * * *
73647506 AAAATTACCAAAATACCACTGGTTTGTGAAATTATCGAAATA-CCCTCAATTTGT
1 AAAATTACCAAAATACCACTGGTTTACAAAATTACCAAAATACCCCTCAGTTTGT
* ** * * * *
73647560 AAAATTACCAAAATACCCCTAATTTACAAAATTA-CAGAAATACCCTTGACTTTCT
1 AAAATTACCAAAATACCACTGGTTTACAAAATTACCA-AAATACCCCTCAGTTTGT
* * **
73647615 AAAAATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAATACC
1 -AAAATTACCA-AAATACCACTGGTTTACAAAATTACCAAAATACC
73647660 TTTGGTTTGT
Statistics
Matches: 122, Mismatches: 25, Indels: 12
0.77 0.16 0.08
Matches are distributed among these distances:
53 5 0.04
54 73 0.60
55 10 0.08
56 34 0.28
ACGTcount: A:0.43, C:0.19, G:0.08, T:0.30
Consensus pattern (55 bp):
AAAATTACCAAAATACCACTGGTTTACAAAATTACCAAAATACCCCTCAGTTTGT
Found at i:73648631 original size:25 final size:26
Alignment explanation
Indices: 73648590--73648659 Score: 99
Period size: 25 Copynumber: 2.8 Consensus size: 26
73648580 AGAAAGTACT
* * *
73648590 AAAAGGGCTCTGTCCCAGTTTA-CCG
1 AAAAGGGCTTTGCCCCAGTTTATCAG
73648615 AAAAGGGCTTTGCCCCAGTTTATCAG
1 AAAAGGGCTTTGCCCCAGTTTATCAG
73648641 AAAA-GGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
73648660 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 35 0.85
26 6 0.15
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
AAAAGGGCTTTGCCCCAGTTTATCAG
Found at i:73648671 original size:24 final size:24
Alignment explanation
Indices: 73648615--73648686 Score: 76
Period size: 25 Copynumber: 3.0 Consensus size: 24
73648605 CAGTTTACCG
73648615 AAAAG-GGCTTTGCCCCAGTTTATC
1 AAAAGAGGCTTTGCCCCAG-TTATC
*
73648639 AGAAA-AGGCTTTGCCCCAGTTATT
1 A-AAAGAGGCTTTGCCCCAGTTATC
**
73648663 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAGAGGCTTTGCC-CCAGTTAT
73648687 ATGATAAAGC
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
23 3 0.07
24 14 0.34
25 24 0.59
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGAGGCTTTGCCCCAGTTATC
Found at i:73648872 original size:42 final size:42
Alignment explanation
Indices: 73648811--73648898 Score: 149
Period size: 42 Copynumber: 2.1 Consensus size: 42
73648801 CTCCCAAAAT
* *
73648811 GGGCTTGCATACATTCATTGACATTACATGTGATATTGAAAC
1 GGGCTTGCATACATCCATTGACATTACATGTGACATTGAAAC
*
73648853 GGGCTTGCATACATCCATTGACATTACATGTGACATTGAAAT
1 GGGCTTGCATACATCCATTGACATTACATGTGACATTGAAAC
73648895 GGGC
1 GGGC
73648899 CTAAGGGCCA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.31
Consensus pattern (42 bp):
GGGCTTGCATACATCCATTGACATTACATGTGACATTGAAAC
Found at i:73648957 original size:31 final size:31
Alignment explanation
Indices: 73648922--73649036 Score: 196
Period size: 31 Copynumber: 3.7 Consensus size: 31
73648912 CGTTTACAGT
73648922 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
73648953 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* * *
73648984 AAATGCTTTGGCCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
73649015 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
73649037 TCAAGACTAA
Statistics
Matches: 79, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
30 5 0.06
31 74 0.94
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:73656834 original size:57 final size:57
Alignment explanation
Indices: 73656762--73656907 Score: 175
Period size: 57 Copynumber: 2.6 Consensus size: 57
73656752 AACTATCTAC
* * *
73656762 GATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTATATCATCAAATAATCTTTT
1 GATGCCATAGCGTCTTTCAACTATGGTCTTACTCACTATACCATCAAATAATCTTTT
** * * *
73656819 GATGCCATAGCGTCTTTCAACTATGGTAGTACTCACTATACCGTCATATTATCTTTT
1 GATGCCATAGCGTCTTTCAACTATGGTCTTACTCACTATACCATCAAATAATCTTTT
* * * * *
73656876 GATTCCACAGCATCTTTCAGCTATGATCTTAC
1 GATGCCATAGCGTCTTTCAACTATGGTCTTAC
73656908 ACAATATAAC
Statistics
Matches: 74, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
57 74 1.00
ACGTcount: A:0.26, C:0.23, G:0.12, T:0.39
Consensus pattern (57 bp):
GATGCCATAGCGTCTTTCAACTATGGTCTTACTCACTATACCATCAAATAATCTTTT
Found at i:73659141 original size:18 final size:19
Alignment explanation
Indices: 73659104--73659141 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
73659094 ACTAATAGTA
*
73659104 TAATCATGATTAACTTAAT
1 TAATCATGATTAACTGAAT
73659123 TAATCATGA-TAACTGAAT
1 TAATCATGATTAACTGAAT
73659141 T
1 T
73659142 TGAAATACCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.42, C:0.11, G:0.08, T:0.39
Consensus pattern (19 bp):
TAATCATGATTAACTGAAT
Found at i:73665013 original size:43 final size:43
Alignment explanation
Indices: 73664923--73665156 Score: 281
Period size: 43 Copynumber: 5.5 Consensus size: 43
73664913 AAAAAACACT
* * *
73664923 GCTAAAGACCATGACTTTTAGCGGCGCTTTT-TTACAAACGCT
1 GCTAAAGACCATGACCTTTAGCGGCGCTTTTCTCACAAACGCC
* * * *
73664965 ACTAAAGACCATGACCTTTAGCGGCGTTTTTTTTACAAACGCC
1 GCTAAAGACCATGACCTTTAGCGGCGCTTTTCTCACAAACGCC
* * * * *
73665008 GCTAAAGACTATGACCTTTAGCGGCACTTTTCCCGCAAATGCC
1 GCTAAAGACCATGACCTTTAGCGGCGCTTTTCTCACAAACGCC
* * *
73665051 GCTAAGGACCATGACCTTTAGCGGCGCTTTTCCCGCAAACGCC
1 GCTAAAGACCATGACCTTTAGCGGCGCTTTTCTCACAAACGCC
* *
73665094 GCTAAGGACCATGACCTTTAGCGGTGCTTTTCTCACAAACGCC
1 GCTAAAGACCATGACCTTTAGCGGCGCTTTTCTCACAAACGCC
* * *
73665137 GCTAAAAATCATGAACTTTA
1 GCTAAAGACCATGACCTTTA
73665157 AAAAAATTAT
Statistics
Matches: 167, Mismatches: 24, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
42 28 0.17
43 139 0.83
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (43 bp):
GCTAAAGACCATGACCTTTAGCGGCGCTTTTCTCACAAACGCC
Found at i:73665156 original size:129 final size:128
Alignment explanation
Indices: 73664923--73665156 Score: 317
Period size: 129 Copynumber: 1.8 Consensus size: 128
73664913 AAAAAACACT
* ** *
73664923 GCTAAAGACCATGACTTTTAGCGGCGCTTTTTTACAAACGCTACTAAAGACCATGACCTTTAGCG
1 GCTAAAGACCATGACCTTTAGCGGCGCTTTTCCACAAACGCCACTAAAGACCATGACCTTTAGCG
* * * * *
73664988 GCGTTTTTTTTACAAACGCCGCTAAAGACTATGACCTTTAGCGGCACTTTTCCCGCAAATGCC
66 GCGCTTTTCTCACAAACGCCGCTAAAAACTATGAACTTTAGCGGCACTTTTCCCGCAAATGCC
* * * *
73665051 GCTAAGGACCATGACCTTTAGCGGCGCTTTTCCCGCAAACGCCGCTAAGGACCATGACCTTTAGC
1 GCTAAAGACCATGACCTTTAGCGGCGCTTTT-CCACAAACGCCACTAAAGACCATGACCTTTAGC
*
73665116 GGTGCTTTTCTCACAAACGCCGCTAAAAA-TCATGAACTTTA
65 GGCGCTTTTCTCACAAACGCCGCTAAAAACT-ATGAACTTTA
73665157 AAAAAATTAT
Statistics
Matches: 90, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
128 30 0.33
129 60 0.67
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (128 bp):
GCTAAAGACCATGACCTTTAGCGGCGCTTTTCCACAAACGCCACTAAAGACCATGACCTTTAGCG
GCGCTTTTCTCACAAACGCCGCTAAAAACTATGAACTTTAGCGGCACTTTTCCCGCAAATGCC
Found at i:73665205 original size:22 final size:23
Alignment explanation
Indices: 73665177--73665219 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
73665167 TTTATTTTAA
*
73665177 TTAAATAATAT-TTATTTTTATG
1 TTAAATAATATATTATGTTTATG
*
73665199 TTAAATATTATATTATGTTTA
1 TTAAATAATATATTATGTTTA
73665220 ATTTTTGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (23 bp):
TTAAATAATATATTATGTTTATG
Found at i:73668292 original size:23 final size:23
Alignment explanation
Indices: 73668266--73668311 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
73668256 TTTTTAAATG
73668266 CCACCTAATCC-ATTTTAACAGAT
1 CCACCTAATCCGA-TTTAACAGAT
73668289 CCACCTAATCCGATTTAACAGAT
1 CCACCTAATCCGATTTAACAGAT
73668312 GTTCTCTAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 21 0.95
24 1 0.05
ACGTcount: A:0.35, C:0.30, G:0.07, T:0.28
Consensus pattern (23 bp):
CCACCTAATCCGATTTAACAGAT
Found at i:73670443 original size:8 final size:7
Alignment explanation
Indices: 73670425--73670562 Score: 55
Period size: 7 Copynumber: 19.1 Consensus size: 7
73670415 ACTAATTAAT
73670425 CTAAACC
1 CTAAACC
73670432 CTAAATCC
1 CTAAA-CC
73670440 CT-AACC
1 CTAAACC
* *
73670446 TCTGACCC
1 -CTAAACC
73670454 CTAAACC
1 CTAAACC
* *
73670461 TTAAATC
1 CTAAACC
* *
73670468 ATAAAAC
1 CTAAACC
*
73670475 ATAAACC
1 CTAAACC
*
73670482 CTTAACCC
1 C-TAAACC
73670490 CTAAACC
1 CTAAACC
*
73670497 TTAAACC
1 CTAAACC
* *
73670504 CCAACCCC
1 CTAA-ACC
*
73670512 TCTAAAAC
1 -CTAAACC
*
73670520 TTAAACC
1 CTAAACC
*
73670527 CT-AATC
1 CTAAACC
*
73670533 CTTAACC
1 CTAAACC
73670540 CATAAACC
1 C-TAAACC
* *
73670548 ATAATCC
1 CTAAACC
73670555 CTAAACC
1 CTAAACC
73670562 C
1 C
73670563 ATAATCTATA
Statistics
Matches: 95, Mismatches: 28, Indels: 16
0.68 0.20 0.12
Matches are distributed among these distances:
6 7 0.07
7 64 0.67
8 21 0.22
9 3 0.03
ACGTcount: A:0.40, C:0.38, G:0.01, T:0.21
Consensus pattern (7 bp):
CTAAACC
Found at i:73670522 original size:23 final size:22
Alignment explanation
Indices: 73670469--73670528 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
73670459 CCTTAAATCA
* *
73670469 TAAAACATAAACCCTTAACCCC
1 TAAAACTTAAACCCTCAACCCC
*
73670491 TAAACCTTAAACCC-CAACCCCTC
1 TAAAACTTAAACCCTCAA-CCC-C
73670514 TAAAACTTAAACCCT
1 TAAAACTTAAACCCT
73670529 AATCCTTAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
21 2 0.06
22 15 0.48
23 14 0.45
ACGTcount: A:0.42, C:0.38, G:0.00, T:0.20
Consensus pattern (22 bp):
TAAAACTTAAACCCTCAACCCC
Found at i:73670573 original size:22 final size:21
Alignment explanation
Indices: 73670521--73670566 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 21
73670511 CTCTAAAACT
* *
73670521 TAAACCCTAATCCTTAACCCA
1 TAAACCATAATCCTAAACCCA
73670542 TAAACCATAATCCCTAAACCCA
1 TAAACCATAAT-CCTAAACCCA
73670564 TAA
1 TAA
73670567 TCTATAAAGC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.43, C:0.35, G:0.00, T:0.22
Consensus pattern (21 bp):
TAAACCATAATCCTAAACCCA
Found at i:73673772 original size:39 final size:39
Alignment explanation
Indices: 73673690--73673893 Score: 278
Period size: 40 Copynumber: 5.3 Consensus size: 39
73673680 GCTCCTCGTT
* * *
73673690 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTA-ACCGGATT-TAGTAACTCGCA
73673730 CAAATGCCTTCGGGACTTAACCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCGGATTTAGTAACTCGCA
73673769 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAA-CCGGATTTAGTAACTCGCA
73673809 CAAATGCCTTCGGG-CTT-ACCGGA-TTAGT-ACTCGCA
1 CAAATGCCTTCGGGACTTAACCGGATTTAGTAACTCGCA
* * *
73673844 CAAATGCCTTC-GG-CTTAGCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCGGATTTAGTAACTCGCA
73673881 CAAATGCCTTCGG
1 CAAATGCCTTCGG
73673894 ATCTTAGTCT
Statistics
Matches: 153, Mismatches: 5, Indels: 14
0.89 0.03 0.08
Matches are distributed among these distances:
34 5 0.03
35 23 0.15
36 10 0.07
37 22 0.14
38 2 0.01
39 38 0.25
40 53 0.35
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAACCGGATTTAGTAACTCGCA
Found at i:73673793 original size:79 final size:75
Alignment explanation
Indices: 73673690--73673893 Score: 258
Period size: 79 Copynumber: 2.7 Consensus size: 75
73673680 GCTCCTCGTT
* *
73673690 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCGGA
1 CAAATGCCTTCGGGACTTAACCCGGTTATAGTAATTCGCACAAATGCCTTCGGG-CTT-ACCGGA
73673755 TTTAGTAACTCGCA
64 -TTAGT-ACTCGCA
*
73673769 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGCTTACCGGAT
1 CAAATGCCTTCGGGACTTAACCCGG-TTATAGTAATTCGCACAAATGCCTTCGGGCTTACCGGAT
73673833 TAGTACTCGCA
65 TAGTACTCGCA
* *
73673844 CAAATGCCTTC-GG-CTT-AGCCGG-AATTAGT-ATCTCGCACAAATGCCTTCGG
1 CAAATGCCTTCGGGACTTAACCCGGTTA-TAGTAAT-TCGCACAAATGCCTTCGG
73673894 ATCTTAGTCT
Statistics
Matches: 115, Mismatches: 6, Indels: 15
0.85 0.04 0.11
Matches are distributed among these distances:
71 1 0.01
72 27 0.23
73 3 0.03
74 2 0.02
75 18 0.16
76 5 0.04
77 6 0.05
78 3 0.03
79 48 0.42
80 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (75 bp):
CAAATGCCTTCGGGACTTAACCCGGTTATAGTAATTCGCACAAATGCCTTCGGGCTTACCGGATT
AGTACTCGCA
Found at i:73690729 original size:40 final size:40
Alignment explanation
Indices: 73690618--73690767 Score: 207
Period size: 40 Copynumber: 3.8 Consensus size: 40
73690608 NNNNNNNNNT
* *
73690618 CTAAATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATA
1 CTAAATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTA
*
73690658 CTAATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTA
1 CTAAATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA
* *
73690697 CTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTA
1 CTAAATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA
*
73690737 CTATAA-CCGGGCTATGTCCCGAAGGCATTTG
1 CTA-AATCCGGGCTAAGTCCCGAAGGCATTTG
73690768 AACGAGGAGC
Statistics
Matches: 99, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
39 35 0.35
40 62 0.63
41 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
CTAAATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA
Found at i:73690749 original size:79 final size:80
Alignment explanation
Indices: 73690618--73690767 Score: 209
Period size: 79 Copynumber: 1.9 Consensus size: 80
73690608 NNNNNNNNNT
*
73690618 CTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-CCCGAAGG
1 CTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGTCCCGAAGG
73690682 CATTTGTGCGAGTTA
66 CATTTGTGCGAGTTA
** *
73690697 CTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGA
1 CTAAATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAGTCCCGA
73690759 AGGCATTTG
63 AGGCATTTG
73690768 AACGAGGAGC
Statistics
Matches: 63, Mismatches: 4, Indels: 7
0.85 0.05 0.09
Matches are distributed among these distances:
78 4 0.06
79 45 0.71
80 14 0.22
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
CTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGTCCCGAAGG
CATTTGTGCGAGTTA
Found at i:73690789 original size:79 final size:79
Alignment explanation
Indices: 73690618--73690800 Score: 196
Period size: 79 Copynumber: 2.3 Consensus size: 79
73690608 NNNNNNNNNT
** *
73690618 CTAAATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGG
1 CTAAATCCGGGTTAA-ATCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGG
** *
73690682 CATTTGTGCGAGTTA
65 CATTTGAACGAGTGA
* *
73690697 CTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAA
1 CTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAA
73690760 GGCATTTGAACGAG-GA
63 GGCATTTGAACGAGTGA
* *
73690776 GCTATATCC-GGTTAAATTCCGAAGG
1 -CTAAATCCGGGTTAAATCCCGAAGG
73690801 TACGTGATTT
Statistics
Matches: 88, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
78 4 0.05
79 59 0.67
80 25 0.28
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (79 bp):
CTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGC
ATTTGAACGAGTGA
Found at i:73695139 original size:51 final size:51
Alignment explanation
Indices: 73695015--73695234 Score: 263
Period size: 51 Copynumber: 4.4 Consensus size: 51
73695005 ACTAGTGACT
*
73695015 CAAGTGTGGTACTATGTGAAGGCCACTTTGGGAAG-AGATAGC-TTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCA
* * *
73695064 CAAGTGTGGTACCATGTGAAGGCCAGTTTATGAAGAAAGATAGCTTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAG-AAGATAGCTTTGGTCA
* * * * *
73695116 CAAGTGTAGTACTATGTG-AGGCCATTTTGTGAAGAAGGTAGCTTTGATTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCA
* *
73695166 CAAG-GATGGTACTATGTGAAGGCCACTTTGTGAAGAAGGTAGCTTT-GACTA
1 CAAGTG-TGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTC-A
73695217 CAAG-GATGGTACTATGTG
1 CAAGTG-TGGTACTATGTG
73695235 CAGGTCACCG
Statistics
Matches: 149, Mismatches: 16, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
49 32 0.21
50 28 0.19
51 66 0.44
52 23 0.15
ACGTcount: A:0.29, C:0.13, G:0.30, T:0.29
Consensus pattern (51 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCA
Found at i:73695220 original size:101 final size:101
Alignment explanation
Indices: 73695010--73695234 Score: 264
Period size: 101 Copynumber: 2.2 Consensus size: 101
73695000 ACGTCACTAG
*
73695010 TGACT-CAAGTGTGGTACTATGTGAAGGCCACTTTGGGAAGAGATAGCTTGGTCACAAGTGTGGT
1 TGACTACAAGTGTGGTACTATGTGAAGGCCACTTTGGGAAGAGATAGCTTGATCACAAGTGTGGT
*
73695074 ACCATGTGAAGGCCAGTTTATGAAGAAAGATAGCTT
66 ACCATGTGAAGGCCACTTTATGAAGAAAGATAGCTT
* * * * * *
73695110 TG-GTCACAAGTGTAGTACTATGTG-AGGCCATTTTGTGAAGAAGGTAGCTTTGATTACAAG-GA
1 TGACT-ACAAGTGTGGTACTATGTGAAGGCCACTTTGGGAAG-AGATAGC-TTGATCACAAGTG-
* * *
73695172 TGGTACTATGTGAAGGCCACTTTGTGAAG-AAGGTAGCTT
62 TGGTACCATGTGAAGGCCACTTTATGAAGAAAGATAGCTT
73695211 TGACTACAAG-GATGGTACTATGTG
1 TGACTACAAGTG-TGGTACTATGTG
73695235 CAGGTCACCG
Statistics
Matches: 105, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
99 1 0.01
100 17 0.16
101 51 0.49
102 36 0.34
ACGTcount: A:0.28, C:0.13, G:0.30, T:0.29
Consensus pattern (101 bp):
TGACTACAAGTGTGGTACTATGTGAAGGCCACTTTGGGAAGAGATAGCTTGATCACAAGTGTGGT
ACCATGTGAAGGCCACTTTATGAAGAAAGATAGCTT
Found at i:73698586 original size:40 final size:40
Alignment explanation
Indices: 73698542--73698764 Score: 219
Period size: 40 Copynumber: 5.6 Consensus size: 40
73698532 GCTCCTCGTT
*
73698542 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAATTCGCA
* *
73698582 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAATTCGCA
* * *
73698622 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAATTCGCA
* *
73698662 CAAATGCCTTCGAG-CTTAGCCCGG-AATTAGT-ATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAAT-TCGCA
* * * * *
73698701 CAAATGCCTTC-GGATCTTAGTCCGGATATTGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGT-AATTCGCA
73698742 C-AA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
73698765 ACAACATTCA
Statistics
Matches: 157, Mismatches: 16, Indels: 21
0.81 0.08 0.11
Matches are distributed among these distances:
38 2 0.01
39 43 0.27
40 103 0.66
41 8 0.05
42 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAATTCGCA
Found at i:73698726 original size:79 final size:81
Alignment explanation
Indices: 73698542--73698765 Score: 255
Period size: 79 Copynumber: 2.8 Consensus size: 81
73698532 GCTCCTCGTT
* * *
73698542 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGAGACTTAACCCG
*
73698606 GATTTAGTAACTCGCA
66 GAATTAGTAACTCGCA
* * *
73698622 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGTACAAATGCCTTCGAG-CTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGAGACTTAACCCG
*
73698685 GAATTAGTATCTCGCA
66 GAATTAGTAACTCGCA
* * * * * *
73698701 CAAATGCCTTC-GGATCTTAGTCCGGA-TATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTATAGTAAC-TCGCACAAATGCCTTCGAGACTTAACC
73698762 CGGA
64 CGGA
73698766 CAACATTCAA
Statistics
Matches: 124, Mismatches: 15, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
78 12 0.10
79 60 0.48
80 50 0.40
81 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGAGACTTAACCCG
GAATTAGTAACTCGCA
Found at i:73704832 original size:27 final size:26
Alignment explanation
Indices: 73704801--73705005 Score: 180
Period size: 27 Copynumber: 7.6 Consensus size: 26
73704791 TAAATTGTAC
73704801 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* *
73704828 TGCACTAAGTGTGCGAAATGGA-TATG-
1 AGCACTAAGTGTGCG--ATTGACTATGT
* *
73704854 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
* *
73704882 GGCACTAAGTGTGCGAGATGGACTATGT
1 AGCACTAAGTGTGC--GATTGACTATGT
* * *
73704910 GGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
73704937 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
73704964 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
73704991 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
73705006 GGCTCAATAA
Statistics
Matches: 153, Mismatches: 17, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
26 7 0.05
27 119 0.78
28 24 0.16
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:73704862 original size:54 final size:54
Alignment explanation
Indices: 73704802--73705005 Score: 207
Period size: 54 Copynumber: 3.7 Consensus size: 54
73704792 AAATTGTACA
*
73704802 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGGA-TATGAT-
1 GCACTAAGTGTGCGATT-GACTATGTAGCACTAAGTGTGCGAAATGGACTATG-TG
* ** *
73704856 GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGATGGACTATGTG
1 GCACTAAGTGTGCG-ATTGACTATGTAGCACTAAGTGTGCGAAATGGACTATGTG
* * * * * * *
73704911 GCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCG-ATTTGATTACGTA
1 GCACTAAGTGTGCGA-TTGACTATGTAGCACTAAGTGTGCGAAATGGACTATGTG
* * *
73704965 GCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAGTGTGCGA-TTGACTATGTAGCACTAAGTGTGCG
73705006 GGCTCAATAA
Statistics
Matches: 127, Mismatches: 19, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
54 86 0.68
55 41 0.32
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAAATGGACTATGTG
Found at i:73704942 original size:82 final size:82
Alignment explanation
Indices: 73704800--73704980 Score: 215
Period size: 82 Copynumber: 2.2 Consensus size: 82
73704790 TTAAATTGTA
* * *
73704800 CAGCACTAAGTGTGCGA-TTCGACTATGTTGCACTAAGTGTGCGAAATGGATATGATGCACTAAG
1 CAGCACTAAGTGTGCGAGATCGACTATGTGGCACTAAGTGTGCGAAATGGATACGATGCACTAAG
*
73704864 TGTGCGAATTGACCATG
66 TGTGCGAATTGACCACG
* * * *
73704881 CGGCACTAAGTGTGCGAGATGGACTATGTGGCACTAAGTGTGCG-ATTTGATTACG-TAGCACTA
1 CAGCACTAAGTGTGCGAGATCGACTATGTGGCACTAAGTGTGCGAAATGGA-TACGAT-GCACTA
* **
73704944 AGTGTGCGATTTGATTACG
64 AGTGTGCGAATTGACCACG
*
73704963 TAGCACTAAGTGTGCGAG
1 CAGCACTAAGTGTGCGAG
73704981 TTGATTATAT
Statistics
Matches: 84, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
81 21 0.25
82 63 0.75
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.28
Consensus pattern (82 bp):
CAGCACTAAGTGTGCGAGATCGACTATGTGGCACTAAGTGTGCGAAATGGATACGATGCACTAAG
TGTGCGAATTGACCACG
Found at i:73704996 original size:109 final size:109
Alignment explanation
Indices: 73704802--73705005 Score: 250
Period size: 109 Copynumber: 1.9 Consensus size: 109
73704792 AAATTGTACA
* * *
73704802 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGGATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCGACTACGTAGCACTAAGTGTGCGAAATGGATACGATGCACTAAGTGT
* *
73704867 GCGAATTGACCATGCGGCACTAAGTGTGCGAGATGGACTATGTG
66 GCGAATTGACCATACAGCACTAAGTGTGCGAGATGGACTATGTG
* * * *
73704911 GCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCG-ATTTGATTACG-TAGCACTAAGT
1 GCACTAAGTGTGCGATTCGACTACGTAGCACTAAGTGTGCGAAATGGA-TACGAT-GCACTAAGT
* ** * *
73704974 GTGCGAGTTGATTATATAGCACTGAGTGTGCG
64 GTGCGAATTGACCATACAGCACTAAGTGTGCG
73705006 GGCTCAATAA
Statistics
Matches: 79, Mismatches: 14, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
108 5 0.06
109 74 0.94
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (109 bp):
GCACTAAGTGTGCGATTCGACTACGTAGCACTAAGTGTGCGAAATGGATACGATGCACTAAGTGT
GCGAATTGACCATACAGCACTAAGTGTGCGAGATGGACTATGTG
Found at i:73709852 original size:40 final size:40
Alignment explanation
Indices: 73709808--73710068 Score: 315
Period size: 39 Copynumber: 6.7 Consensus size: 40
73709798 GCTCCTCGTT
* *
73709808 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
73709848 CAAATG-CTTC-GGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
73709886 CAAATGCCTTC-GGACATAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
73709925 CAAATGCCTTCGGGACTTAACCTGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
73709965 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
73710004 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGTAAC-TCGCA
73710045 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
73710069 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 16, Indels: 17
0.86 0.07 0.07
Matches are distributed among these distances:
38 30 0.15
39 96 0.49
40 64 0.32
41 7 0.04
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:73709967 original size:79 final size:79
Alignment explanation
Indices: 73709808--73710016 Score: 316
Period size: 79 Copynumber: 2.7 Consensus size: 79
73709798 GCTCCTCGTT
*
73709808 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCACAAATG-CTTC-GGACTTAACCCG
1 CAAATGCCTTC-GGACATAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
73709870 GATTTAGTAACTCGCA
64 GATTTAGTAACTCGCA
* *
73709886 CAAATGCCTTCGGACATAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCTGGA
1 CAAATGCCTTCGGACATAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
73709951 TTTAGTAACTCGCA
66 TTTAGTAACTCGCA
* * * *
73709965 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGG
1 CAAATGCCTTCGGACATAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGG
73710017 ATCTTAGTCC
Statistics
Matches: 120, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
77 29 0.24
78 17 0.14
79 74 0.62
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGACATAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TTTAGTAACTCGCA
Found at i:73710062 original size:79 final size:78
Alignment explanation
Indices: 73709808--73710068 Score: 313
Period size: 79 Copynumber: 3.3 Consensus size: 78
73709798 GCTCCTCGTT
73709808 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATG-CTTCGGACTTAACCCG
1 CAAATGCCTTCGGGACATAGCCCGGATT-TAGT-ATCTCGCACAAATGCCTTCGGACTTAA-CCG
73709870 GATTTAGTAACTCGCA
63 GATTTAGTAACTCGCA
* *
73709886 CAAATGCCTTC-GGACATAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCTGG
1 CAAATGCCTTCGGGACATAGCCCGGATTTAGTATCTCGCACAAATGCCTTC-GGACTTAACC-GG
73709950 ATTTAGTAACTCGCA
64 ATTTAGTAACTCGCA
* * *
73709965 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATTTAGTATCTCGCACAAATGCCTTCGGA-CTTA-ACCGG
* *
73710029 ATATT-GTCACTTAGCA
64 AT-TTAGTAAC-TCGCA
*
73710045 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACATAGCCCGGA
73710069 CAGCATTCAA
Statistics
Matches: 163, Mismatches: 9, Indels: 21
0.84 0.05 0.11
Matches are distributed among these distances:
76 1 0.01
77 27 0.17
78 31 0.19
79 93 0.57
80 11 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGACATAGCCCGGATTTAGTATCTCGCACAAATGCCTTCGGACTTAACCGGAT
TTAGTAACTCGCA
Found at i:73731881 original size:15 final size:17
Alignment explanation
Indices: 73731847--73731883 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
73731837 TATATTTTTT
73731847 ATTTTATTTGTTTATGC
1 ATTTTATTTGTTTATGC
*
73731864 ATTTT-TTTG-TTATTC
1 ATTTTATTTGTTTATGC
73731879 ATTTT
1 ATTTT
73731884 CAATAGTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 10 0.53
16 4 0.21
17 5 0.26
ACGTcount: A:0.16, C:0.05, G:0.08, T:0.70
Consensus pattern (17 bp):
ATTTTATTTGTTTATGC
Found at i:73737748 original size:17 final size:18
Alignment explanation
Indices: 73737728--73737763 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
73737718 TAATCTTGTT
73737728 TTAATAAATTAATA-GCA
1 TTAATAAATTAATATGCA
*
73737745 TTAATAATTTAATATGCA
1 TTAATAAATTAATATGCA
73737763 T
1 T
73737764 ATATTTGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.42
Consensus pattern (18 bp):
TTAATAAATTAATATGCA
Found at i:73741653 original size:50 final size:49
Alignment explanation
Indices: 73741582--73741804 Score: 162
Period size: 48 Copynumber: 4.7 Consensus size: 49
73741572 AGGCCAACGC
*
73741582 CATGTCCCAGACATGGTCTTACACTGGCTCTCACATCTCTGTGTCGATGT
1 CATGTCCCAGACATGGTCTTACACTGGCTCTCACATCTC-ATGTCGATGT
* * ** *
73741632 CATGTCCCAGACATGGTCTTACACTGACAC-CTTTAT-ACATGTCGATGT
1 CATGTCCCAGACATGGTCTTACACTGGCTCTC-ACATCTCATGTCGATGT
* ** *
73741680 TATGTCCCAGACATGGTCTTACA----CTAACACATCTCGTAG-CTGATG-
1 CATGTCCCAGACATGGTCTTACACTGGCTCTCACATCTCAT-GTC-GATGT
* * * * *
73741725 CATGTCCCAAACAT-GTCTTACACTAGCTCTCAC--CTCAATGCCAATGC
1 CATGTCCCAGACATGGTCTTACACTGGCTCTCACATCTC-ATGTCGATGT
** *
73741772 CATGTCTTAGACATGGTCTTACAATGGCTCTCA
1 CATGTCCCAGACATGGTCTTACACTGGCTCTCA
73741805 TAATGTGCTT
Statistics
Matches: 136, Mismatches: 24, Indels: 28
0.72 0.13 0.15
Matches are distributed among these distances:
44 11 0.08
45 16 0.12
46 12 0.09
47 13 0.10
48 52 0.38
49 2 0.01
50 30 0.22
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.30
Consensus pattern (49 bp):
CATGTCCCAGACATGGTCTTACACTGGCTCTCACATCTCATGTCGATGT
Found at i:73743067 original size:17 final size:17
Alignment explanation
Indices: 73743020--73743067 Score: 62
Period size: 16 Copynumber: 2.9 Consensus size: 17
73743010 CTACTGTTCC
73743020 GACTAGGCCCAAAATCA
1 GACTAGGCCCAAAATCA
***
73743037 GACT-GTTACAAAATCA
1 GACTAGGCCCAAAATCA
73743053 GACTAGGCCCAAAAT
1 GACTAGGCCCAAAAT
73743068 ATGAGCTATG
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
16 13 0.54
17 11 0.46
ACGTcount: A:0.42, C:0.25, G:0.17, T:0.17
Consensus pattern (17 bp):
GACTAGGCCCAAAATCA
Found at i:73748105 original size:17 final size:15
Alignment explanation
Indices: 73748083--73748122 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 15
73748073 TGTTCCATAT
73748083 AAAAAAATAAAAGAAAG
1 AAAAAAA-AAAAG-AAG
73748100 AAAAAAGAAAAAGAAG
1 AAAAAA-AAAAAGAAG
73748116 AAAAAAA
1 AAAAAAA
73748123 GTTAAAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 1 0.05
16 9 0.41
17 11 0.50
18 1 0.05
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.03
Consensus pattern (15 bp):
AAAAAAAAAAAGAAG
Found at i:73750994 original size:37 final size:37
Alignment explanation
Indices: 73750933--73751115 Score: 190
Period size: 37 Copynumber: 4.9 Consensus size: 37
73750923 ATACTCCCTA
* * * * *
73750933 ATTTGGCGTTTTATCAGGTAGATTATCTTTTATGAAC
1 ATTTGGCGTGTCATCAGGTGGATTAGCTCTTATGAAC
* * *
73750970 ATTTGGCTTGTCATCGGGTGGATTAGCTCTTATAGGA-
1 ATTTGGCGTGTCATCAGGTGGATTAGCTCTTAT-GAAC
* * * * *
73751007 ATTTGGCGTGTTATCTGATGGATTAGCTCCTATGAGC
1 ATTTGGCGTGTCATCAGGTGGATTAGCTCTTATGAAC
*
73751044 ATTTGGCGTGTCATCAGGTGGATTAGCTCTTATGAGC
1 ATTTGGCGTGTCATCAGGTGGATTAGCTCTTATGAAC
* *
73751081 ATTTGGCGTGTCATCAAGG-GAAGTAGCTCTTATGA
1 ATTTGGCGTGTCATC-AGGTGGATTAGCTCTTATGA
73751116 GCAATTAGCG
Statistics
Matches: 122, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
36 1 0.01
37 116 0.95
38 5 0.04
ACGTcount: A:0.21, C:0.14, G:0.27, T:0.38
Consensus pattern (37 bp):
ATTTGGCGTGTCATCAGGTGGATTAGCTCTTATGAAC
Found at i:73752352 original size:15 final size:15
Alignment explanation
Indices: 73752331--73752365 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
73752321 ACTCTTTAAG
73752331 CTTTAGTTTAATTTA
1 CTTTAGTTTAATTTA
* *
73752346 TTTTAGTTTATTTTA
1 CTTTAGTTTAATTTA
73752361 CTTTA
1 CTTTA
73752366 AAATTGTCAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.23, C:0.06, G:0.06, T:0.66
Consensus pattern (15 bp):
CTTTAGTTTAATTTA
Found at i:73755273 original size:20 final size:20
Alignment explanation
Indices: 73755248--73755288 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
73755238 ATACTAAGGT
73755248 CATTTAAGAGTATAATTAAA
1 CATTTAAGAGTATAATTAAA
73755268 CATTTAAGAGTATAATTAAA
1 CATTTAAGAGTATAATTAAA
73755288 C
1 C
73755289 CATGTTAAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.49, C:0.07, G:0.10, T:0.34
Consensus pattern (20 bp):
CATTTAAGAGTATAATTAAA
Done.