Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 223 of 255
Found at i:74093874 original size:15 final size:15
Alignment explanation
Indices: 74093846--74093889 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 15
74093836 CATGTGCATA
74093846 TCATA-CATATCATG
1 TCATATCATATCATG
74093860 TGCATATCATA-CATG
1 T-CATATCATATCATG
74093875 TCATATGCATATCAT
1 TCATAT-CATATCAT
74093890 ACATACCAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
14 6 0.23
15 13 0.50
16 7 0.27
ACGTcount: A:0.34, C:0.20, G:0.09, T:0.36
Consensus pattern (15 bp):
TCATATCATATCATG
Found at i:74093969 original size:25 final size:25
Alignment explanation
Indices: 74093937--74093984 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
74093927 ATATATAAAC
* * *
74093937 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
74093962 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
74093985 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:74097646 original size:7 final size:7
Alignment explanation
Indices: 74097634--74097664 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
74097624 AGAAAAGAAA
74097634 GGGAAGG
1 GGGAAGG
74097641 GGGAAGG
1 GGGAAGG
74097648 GGGAAGG
1 GGGAAGG
74097655 GGGAAGG
1 GGGAAGG
74097662 GGG
1 GGG
74097665 TCGGCCGGCG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.26, C:0.00, G:0.74, T:0.00
Consensus pattern (7 bp):
GGGAAGG
Found at i:74098243 original size:44 final size:44
Alignment explanation
Indices: 74098193--74098281 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
74098183 GTATAACACA
74098193 CGAGGTTTATACTCTTTGCTTACCAGTTTCTGCTTACTGTGGTT
1 CGAGGTTTATACTCTTTGCTTACCAGTTTCTGCTTACTGTGGTT
74098237 CGAGGTTTATACTCTTTGCTTACCAGTTTCTGCTTACTGTGGTT
1 CGAGGTTTATACTCTTTGCTTACCAGTTTCTGCTTACTGTGGTT
74098281 C
1 C
74098282 ACCTCATCCT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.13, C:0.21, G:0.20, T:0.45
Consensus pattern (44 bp):
CGAGGTTTATACTCTTTGCTTACCAGTTTCTGCTTACTGTGGTT
Found at i:74098265 original size:21 final size:21
Alignment explanation
Indices: 74098197--74098265 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
74098187 AACACACGAG
74098197 GTTTATACTCTTTGCTTACCA
1 GTTTATACTCTTTGCTTACCA
* * * * *
74098218 GTTTCTGCTTACTGTGGTT-CGA
1 GTTTATAC-T-CTTTGCTTACCA
74098240 GGTTTATACTCTTTGCTTACCA
1 -GTTTATACTCTTTGCTTACCA
74098262 GTTT
1 GTTT
74098266 CTGCTTACTG
Statistics
Matches: 34, Mismatches: 10, Indels: 8
0.65 0.19 0.15
Matches are distributed among these distances:
21 16 0.47
22 6 0.18
23 12 0.35
ACGTcount: A:0.14, C:0.20, G:0.17, T:0.48
Consensus pattern (21 bp):
GTTTATACTCTTTGCTTACCA
Found at i:74102076 original size:9 final size:9
Alignment explanation
Indices: 74102062--74102098 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
74102052 TATAGTTTGA
74102062 TATTTGAAT
1 TATTTGAAT
74102071 TATTTGAAT
1 TATTTGAAT
*
74102080 TATTTGAGT
1 TATTTGAAT
*
74102089 TATTCGAAT
1 TATTTGAAT
74102098 T
1 T
74102099 TGAAAACTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.30, C:0.03, G:0.14, T:0.54
Consensus pattern (9 bp):
TATTTGAAT
Found at i:74121095 original size:24 final size:24
Alignment explanation
Indices: 74121057--74121102 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
74121047 TGTATAACGG
74121057 GAAACTCATAAGAGCC-ATAATCA
1 GAAACTCATAAGAGCCAATAATCA
*
74121080 GAAAGCTCATACGAGCCAATAAT
1 GAAA-CTCATAAGAGCCAATAAT
74121103 GGGTAGCTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 4 0.20
24 11 0.55
25 5 0.25
ACGTcount: A:0.46, C:0.22, G:0.15, T:0.17
Consensus pattern (24 bp):
GAAACTCATAAGAGCCAATAATCA
Found at i:74121217 original size:26 final size:26
Alignment explanation
Indices: 74121177--74121247 Score: 81
Period size: 26 Copynumber: 2.8 Consensus size: 26
74121167 AGTCATATCG
*
74121177 AGAAGCTCA-AGAGAGCCATTAATCA
1 AGAAGCTCACAAAGAGCCATTAATCA
** *
74121202 AGAATTTCACAAAGAGCCTTTAATCA
1 AGAAGCTCACAAAGAGCCATTAATCA
* *
74121228 GGAAGCTCACGAAGAGCCAT
1 AGAAGCTCACAAAGAGCCAT
74121248 ATATCGGGAT
Statistics
Matches: 36, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
25 7 0.19
26 29 0.81
ACGTcount: A:0.41, C:0.21, G:0.20, T:0.18
Consensus pattern (26 bp):
AGAAGCTCACAAAGAGCCATTAATCA
Found at i:74139347 original size:15 final size:15
Alignment explanation
Indices: 74139301--74139339 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
74139291 AGACTTATAT
* *
74139301 TTATTATTATGTTTA
1 TTATTATTTTGATTA
*
74139316 TTATTATTTTGAGTA
1 TTATTATTTTGATTA
74139331 TTATTATTT
1 TTATTATTT
74139340 CTATTATTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.26, C:0.00, G:0.08, T:0.67
Consensus pattern (15 bp):
TTATTATTTTGATTA
Found at i:74139399 original size:3 final size:3
Alignment explanation
Indices: 74139393--74139419 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
74139383 ATTATTATTA
74139393 TTG TTG TTG TTG TTG TTG TTG TTG TTG
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG
74139420 CAACTATTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.33, T:0.67
Consensus pattern (3 bp):
TTG
Found at i:74139463 original size:23 final size:24
Alignment explanation
Indices: 74139424--74139476 Score: 65
Period size: 23 Copynumber: 2.2 Consensus size: 24
74139414 TTGTTGCAAC
*
74139424 TATTATTATATTTGTTA-TATTTGT
1 TATTATTATATTTGTTACTA-TTAT
*
74139448 TATTATT-TTTTTGTTACTATTAT
1 TATTATTATATTTGTTACTATTAT
74139471 TATTAT
1 TATTAT
74139477 CATACTATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
23 17 0.65
24 9 0.35
ACGTcount: A:0.25, C:0.02, G:0.06, T:0.68
Consensus pattern (24 bp):
TATTATTATATTTGTTACTATTAT
Found at i:74141653 original size:19 final size:19
Alignment explanation
Indices: 74141629--74141673 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
74141619 CGTCTCTTTT
*
74141629 TGCATT-CATTTCATGCATC
1 TGCATTGCATTTCAT-CATA
74141648 TGCATTGCATTTCATCATA
1 TGCATTGCATTTCATCATA
74141667 TGCATTG
1 TGCATTG
74141674 AATGTCACAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 16 0.67
20 8 0.33
ACGTcount: A:0.22, C:0.22, G:0.13, T:0.42
Consensus pattern (19 bp):
TGCATTGCATTTCATCATA
Found at i:74144494 original size:7 final size:7
Alignment explanation
Indices: 74144484--74144508 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
74144474 AGGGAAAAAT
74144484 AAAAGTA
1 AAAAGTA
74144491 AAAAGTA
1 AAAAGTA
74144498 AAAAGTA
1 AAAAGTA
74144505 AAAA
1 AAAA
74144509 AAAACAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.76, C:0.00, G:0.12, T:0.12
Consensus pattern (7 bp):
AAAAGTA
Found at i:74146384 original size:132 final size:133
Alignment explanation
Indices: 74146144--74146729 Score: 824
Period size: 132 Copynumber: 4.4 Consensus size: 133
74146134 CAGTGAAAAT
* *
74146144 TGCAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCGAAGACGGTGAATCTTATCTTCCCGAG
1 TGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCGAG
* * *
74146209 GTAGTAGGGAAGCAGATTTAATCCATTAGCCTTATCTCCCTAAGCAGTAGTGGAGCAG-GCTGAA
66 GTAGTAGGGAAGCAGATTTAAGCCACTAGCCTTATCTCCCTAAGTAGTAGTGGAGCAGAGCTGAA
74146273 GAA
131 GAA
* *
74146276 TGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCGAA
1 TGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCGAG
* * * *
74146341 GTAGTAGGGAAGCAGATTTAAACCACTAGCCTTATCTCCCTAAGAAGTAGTGGAG-TGAGCTGAT
66 GTAGTAGGGAAGCAGATTTAAGCCACTAGCCTTATCTCCCTAAGTAGTAGTGGAGCAGAGCTGAA
*
74146405 GAT
131 GAA
* * **
74146408 TACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCGAATCTTATCTTCTAGAG
1 TGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCGAG
* **
74146473 GTATTAGGGAAGCAGATTTAAGCCACTAGCCTTATCTCTTTAAGTAGTAGTGGAGC-GAGCT-AA
66 GTAGTAGGGAAGCAGATTTAAGCCACTAGCCTTATCTCCCTAAGTAGTAGTGGAGCAGAGCTGAA
*
74146536 TGAT
131 -GAA
* *
74146540 TGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTCCCGAG
1 TGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCGAG
* * * * * ** *
74146605 GTAGTAGGGAAGCAGATTTAGGCCACTAGCCTCATCTCCTTAAGTTGCAGTACAGCA-AACTGAA
66 GTAGTAGGGAAGCAGATTTAAGCCACTAGCCTTATCTCCCTAAGTAGTAGTGGAGCAGAGCTGAA
74146669 -AA
131 GAA
* *
74146671 TTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAATCTTATCT
1 -TGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCT
74146730 CCATGTAGCG
Statistics
Matches: 408, Mismatches: 40, Indels: 12
0.89 0.09 0.03
Matches are distributed among these distances:
131 3 0.01
132 403 0.99
133 2 0.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (133 bp):
TGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCGAG
GTAGTAGGGAAGCAGATTTAAGCCACTAGCCTTATCTCCCTAAGTAGTAGTGGAGCAGAGCTGAA
GAA
Found at i:74146593 original size:44 final size:44
Alignment explanation
Indices: 74146149--74146597 Score: 211
Period size: 44 Copynumber: 10.2 Consensus size: 44
74146139 AAAATTGCAG
* **
74146149 ATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCGAAGACGGTGA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCAA
* * * ** *
74146193 ATCTTATCTTCCCGAGGTAGTAG-GGAAGCAGATTTAA-TC--CATTA
1 ATCTTATC-TCCCTAAGCAGTAGTGG-AGCAGATCGAAGACGGCA--A
** * ** * *
74146237 GCCTTATCTCCCTAAGCAGTAGTGGAGCAG-GCTGAAGAATGTAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC-GAAGACGGCAA
*
74146281 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCAA
* * ** ** *
74146325 ATCTTATCTTCCCGAAGTAGTAG-GGAAGCAGATTTAA-ACCACTA
1 ATCTTATC-TCCCTAAGCAGTAGTGG-AGCAGATCGAAGACGGCAA
** * * * * *** *
74146369 GCCTTATCTCCCTAAGAAGTAGTGGAG-TGAGCTGATGATTACAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC-GAAGACGGCAA
* *
74146413 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCGA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCAA
* * * ** ** *
74146457 ATCTTATCT-TCTAGAGGTATTAG-GGAAGCAGATTTAAG-CCACTA
1 ATCTTATCTCCCTA-A-GCAGTAGTGG-AGCAGATCGAAGACGGCAA
** ** * * * ** *
74146501 GCCTTATCTCTTTAAGTAGTAGTGGAGC-GAGCTAATGATTGCAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAA-GACGGCAA
*
74146545 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCAA
74146589 ATCTTATCT
1 ATCTTATCT
74146598 TCCCGAGGTA
Statistics
Matches: 291, Mismatches: 90, Indels: 48
0.68 0.21 0.11
Matches are distributed among these distances:
42 7 0.02
43 46 0.16
44 169 0.58
45 68 0.23
46 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (44 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCAA
Found at i:74146794 original size:44 final size:44
Alignment explanation
Indices: 74146746--74146840 Score: 102
Period size: 44 Copynumber: 2.2 Consensus size: 44
74146736 AGCGGCAATG
* * * * *
74146746 GAGCAGATTTAAGCCACCAG-CTTTATCTCCCTGGAGTTACAGTA
1 GAGCAGATTCAAGACACAAGTC-TTATCTCCCCGAAGTTACAGTA
* * *
74146790 GAGCAGGTTCAAGATACAAGTCTTATCTCCCCGAAGTTGCAGTA
1 GAGCAGATTCAAGACACAAGTCTTATCTCCCCGAAGTTACAGTA
74146834 GAGCAGA
1 GAGCAGA
74146841 CTGAAAATTG
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
44 40 0.98
45 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.24
Consensus pattern (44 bp):
GAGCAGATTCAAGACACAAGTCTTATCTCCCCGAAGTTACAGTA
Found at i:74146848 original size:177 final size:177
Alignment explanation
Indices: 74146646--74146985 Score: 538
Period size: 177 Copynumber: 1.9 Consensus size: 177
74146636 TCATCTCCTT
74146646 AAGTTGCAGTACAGCAAACTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG
1 AAGTTGCAGTACAGCAAACTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG
* *
74146711 AAGACGGTGAATCTTATCTCCATGTAGCGGCAATGGAGCAGATTTAAGCCACCAG-CTTTATCTC
66 AAGACGGCGAATCTTATCTCCATGTAGCGGCAATGGAGCAGATTTAAGCCACCAGCCTTT-TCCC
**
74146775 CCTGGAGTTACAGTAGAGCAGGTTCAAGATACAAGTCTTATCTCCCCG
130 CCTAAAGTTACAGTAGAGCAGGTTCAAGATACAAGTCTTATCTCCCCG
* * ** * *
74146823 AAGTTGCAGTAGAGCAGACTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATTG
1 AAGTTGCAGTACAGCAAACTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG
* *
74146888 AAGATGGCGAATCTTATCTCCATGTAGCGGCAATGGAGCAGATTTAAGCCATCAGCCTTTTCCCC
66 AAGACGGCGAATCTTATCTCCATGTAGCGGCAATGGAGCAGATTTAAGCCACCAGCCTTTTCCCC
* *
74146953 CTAAAGTTGCAGTAGAGCAGGTTCAAGCTACAA
131 CTAAAGTTACAGTAGAGCAGGTTCAAGATACAA
74146986 ATCTGTTCTC
Statistics
Matches: 148, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
177 144 0.97
178 4 0.03
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (177 bp):
AAGTTGCAGTACAGCAAACTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG
AAGACGGCGAATCTTATCTCCATGTAGCGGCAATGGAGCAGATTTAAGCCACCAGCCTTTTCCCC
CTAAAGTTACAGTAGAGCAGGTTCAAGATACAAGTCTTATCTCCCCG
Found at i:74148236 original size:3 final size:3
Alignment explanation
Indices: 74148228--74148324 Score: 60
Period size: 3 Copynumber: 32.7 Consensus size: 3
74148218 AGTCTTATAT
*
74148228 TTA TTA TTA TGT- TTA TTA TTA TT- TTGA GTA TTA TTA TT- TCTA TTA
1 TTA TTA TTA T-TA TTA TTA TTA TTA TT-A TTA TTA TTA TTA T-TA TTA
* * * * * *
74148273 TTG CTA TTA CTA TTG TT- TTA TT- TGTA TTA TTA CTA TCA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA
74148317 TTA TTA TT
1 TTA TTA TT
74148325 GTATTTGTTA
Statistics
Matches: 72, Mismatches: 13, Indels: 18
0.70 0.13 0.17
Matches are distributed among these distances:
2 7 0.10
3 61 0.85
4 4 0.06
ACGTcount: A:0.26, C:0.05, G:0.06, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:74148271 original size:12 final size:11
Alignment explanation
Indices: 74148222--74148362 Score: 52
Period size: 12 Copynumber: 11.6 Consensus size: 11
74148212 AATTTGAGTC
74148222 TTATATTTATTA
1 TTAT-TTTATTA
74148234 TTATGTTTATTA
1 TTAT-TTTATTA
74148246 TTATTTTGAGTATTA
1 TTA-TTT---TATTA
74148261 TTATTTCTATTA
1 TTATTT-TATTA
* * *
74148273 TTGCTATTACTA
1 TT-ATTTTATTA
*
74148285 TTGTTTTATT-
1 TTATTTTATTA
*
74148295 TGTATTATTACTA
1 T-TATT-TTATTA
*
74148308 TCATTATTATTA
1 TTATT-TTATTA
* *
74148320 TTATTGTATTTG
1 TTATTTTA-TTA
*
74148332 TTATATTTGTTA
1 TTAT-TTTATTA
74148344 -TATTTGTTATTA
1 TTA-TT-TTATTA
74148356 TTATTTT
1 TTATTTT
74148363 TGTTACTATT
Statistics
Matches: 97, Mismatches: 19, Indels: 27
0.68 0.13 0.19
Matches are distributed among these distances:
10 1 0.01
11 15 0.15
12 62 0.64
13 8 0.08
14 3 0.03
15 8 0.08
ACGTcount: A:0.25, C:0.04, G:0.07, T:0.65
Consensus pattern (11 bp):
TTATTTTATTA
Found at i:74148274 original size:15 final size:14
Alignment explanation
Indices: 74148228--74148375 Score: 58
Period size: 15 Copynumber: 10.6 Consensus size: 14
74148218 AGTCTTATAT
74148228 TTATTATTATGTTTA
1 TTATTATTAT-TTTA
*
74148243 TTATTA-T-TTTGA
1 TTATTATTATTTTA
*
74148255 GTATTATTATTTCTA
1 TTATTATTATTT-TA
** *
74148270 TTATTGCTATTACTA
1 TTATTATTATT-TTA
*
74148285 TTGTT-TTATTTGTA
1 TTATTATTATTT-TA
* *
74148299 TTATTACTATCATTA
1 TTATTATTAT-TTTA
*
74148314 TTATTATTATTGTA
1 TTATTATTATTTTA
* *
74148328 -T-TTGTTATATTTG
1 TTATTATTAT-TTTA
*
74148341 TTA-TATT-TGTTA
1 TTATTATTATTTTA
*
74148353 TTATTATTTTTGTTA
1 TTATTATTATT-TTA
*
74148368 CTATTATT
1 TTATTATT
74148376 TTTATCATAC
Statistics
Matches: 96, Mismatches: 24, Indels: 26
0.66 0.16 0.18
Matches are distributed among these distances:
12 19 0.20
13 10 0.10
14 21 0.22
15 45 0.47
16 1 0.01
ACGTcount: A:0.24, C:0.04, G:0.07, T:0.64
Consensus pattern (14 bp):
TTATTATTATTTTA
Found at i:74148315 original size:29 final size:30
Alignment explanation
Indices: 74148256--74148329 Score: 89
Period size: 29 Copynumber: 2.5 Consensus size: 30
74148246 TTATTTTGAG
* * *
74148256 TATTATTATTTCTATTATTGCTATTACTAT
1 TATTATTATTTGTATTATTACTATCACTAT
* *
74148286 TGTT-TTATTTGTATTATTACTATCATTAT
1 TATTATTATTTGTATTATTACTATCACTAT
74148315 TATTATTA-TTGTATT
1 TATTATTATTTGTATT
74148330 TGTTATATTT
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
29 31 0.84
30 6 0.16
ACGTcount: A:0.26, C:0.07, G:0.05, T:0.62
Consensus pattern (30 bp):
TATTATTATTTGTATTATTACTATCACTAT
Found at i:74148335 original size:18 final size:18
Alignment explanation
Indices: 74148291--74148360 Score: 65
Period size: 18 Copynumber: 3.9 Consensus size: 18
74148281 ACTATTGTTT
*
74148291 TATTTG-TATTATTACTA
1 TATTTGTTATTATTATTA
* *
74148308 TCA-TTATTATTATTATTG
1 T-ATTTGTTATTATTATTA
*
74148326 TATTTGTTA-TATTTGTTA
1 TATTTGTTATTA-TTATTA
74148344 TATTTGTTATTATTATT
1 TATTTGTTATTATTATT
74148361 TTTGTTACTA
Statistics
Matches: 41, Mismatches: 7, Indels: 9
0.72 0.12 0.16
Matches are distributed among these distances:
17 6 0.15
18 33 0.80
19 2 0.05
ACGTcount: A:0.26, C:0.03, G:0.07, T:0.64
Consensus pattern (18 bp):
TATTTGTTATTATTATTA
Found at i:74148338 original size:9 final size:9
Alignment explanation
Indices: 74148326--74148353 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
74148316 ATTATTATTG
74148326 TATTTGTTA
1 TATTTGTTA
74148335 TATTTGTTA
1 TATTTGTTA
74148344 TATTTGTTA
1 TATTTGTTA
74148353 T
1 T
74148354 TATTATTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.21, C:0.00, G:0.11, T:0.68
Consensus pattern (9 bp):
TATTTGTTA
Found at i:74152465 original size:26 final size:26
Alignment explanation
Indices: 74152434--74152541 Score: 164
Period size: 26 Copynumber: 4.2 Consensus size: 26
74152424 TGAAATTCCC
74152434 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
* *
74152460 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
* *
74152486 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
74152512 ATCATGGAACATTTACCT-AACACATT
1 ATCATGGAACATTTACCTAAAC-CATT
74152538 ATCA
1 ATCA
74152542 ATTTGTATCA
Statistics
Matches: 76, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
25 2 0.03
26 74 0.97
ACGTcount: A:0.37, C:0.22, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:74153018 original size:31 final size:30
Alignment explanation
Indices: 74152948--74153019 Score: 72
Period size: 31 Copynumber: 2.4 Consensus size: 30
74152938 TATAAATATG
** *
74152948 AACTTTAATTTGGTGTAATTATATACCTGA
1 AACTTTAATTTGGTACAAATATATACCTGA
* * **
74152978 AAGTCTAATTGTGGTACAAATATATATTTGA
1 AACTTTAATT-TGGTACAAATATATACCTGA
74153009 AACTTTAATTT
1 AACTTTAATTT
74153020 TGATTTAATA
Statistics
Matches: 32, Mismatches: 9, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
30 9 0.28
31 23 0.72
ACGTcount: A:0.36, C:0.08, G:0.12, T:0.43
Consensus pattern (30 bp):
AACTTTAATTTGGTACAAATATATACCTGA
Found at i:74155386 original size:24 final size:24
Alignment explanation
Indices: 74155353--74155400 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
74155343 CTTATTTACA
74155353 TAATTATAAATA-ATATATTATTTT
1 TAATTATAAATATATA-ATTATTTT
*
74155377 TAATTTTAAATATATAATTATTTT
1 TAATTATAAATATATAATTATTTT
74155401 ATAAGTTAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 19 0.86
25 3 0.14
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (24 bp):
TAATTATAAATATATAATTATTTT
Found at i:74155409 original size:24 final size:24
Alignment explanation
Indices: 74155359--74155409 Score: 61
Period size: 24 Copynumber: 2.1 Consensus size: 24
74155349 TACATAATTA
*
74155359 TAAATAATATATTATTTTTAATTT
1 TAAATAATATATTATTTTTAATGT
74155383 TAAAT-ATATAATTATTTTATAA-GT
1 TAAATAATAT-ATTATTTT-TAATGT
74155407 TAA
1 TAA
74155410 CTTATTTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
23 4 0.17
24 17 0.71
25 3 0.12
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (24 bp):
TAAATAATATATTATTTTTAATGT
Found at i:74155980 original size:21 final size:20
Alignment explanation
Indices: 74155951--74155989 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
74155941 GCAATCACAC
*
74155951 AAAATATCGATACTTTTTTA
1 AAAATATCGATACCTTTTTA
74155971 AAAATTATCGATACCTTTT
1 AAAA-TATCGATACCTTTT
74155990 ACCATGTATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.38, C:0.13, G:0.05, T:0.44
Consensus pattern (20 bp):
AAAATATCGATACCTTTTTA
Found at i:74155989 original size:20 final size:20
Alignment explanation
Indices: 74155951--74155990 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
74155941 GCAATCACAC
*
74155951 AAAATATCGATACTTTTTTA
1 AAAATATCGATACTCTTTTA
74155971 AAAATTATCGATAC-CTTTTA
1 AAAA-TATCGATACTCTTTTA
74155991 CCATGTATCG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.40, C:0.12, G:0.05, T:0.42
Consensus pattern (20 bp):
AAAATATCGATACTCTTTTA
Found at i:74157286 original size:42 final size:42
Alignment explanation
Indices: 74157240--74157326 Score: 174
Period size: 42 Copynumber: 2.1 Consensus size: 42
74157230 TCAAATGCAG
74157240 TTTTGAATTTTTATATTTAAGTCCTTACTATGTAGATTTCGA
1 TTTTGAATTTTTATATTTAAGTCCTTACTATGTAGATTTCGA
74157282 TTTTGAATTTTTATATTTAAGTCCTTACTATGTAGATTTCGA
1 TTTTGAATTTTTATATTTAAGTCCTTACTATGTAGATTTCGA
74157324 TTT
1 TTT
74157327 ATTCAACTTG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.25, C:0.09, G:0.11, T:0.54
Consensus pattern (42 bp):
TTTTGAATTTTTATATTTAAGTCCTTACTATGTAGATTTCGA
Found at i:74164841 original size:22 final size:22
Alignment explanation
Indices: 74164814--74164858 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
74164804 TATATACTAA
*
74164814 ATATATATATTTTTATTTTTAATC
1 ATATATATA-TATT-TTTTTAATC
*
74164838 ATATTTATATATTTTTTTAAT
1 ATATATATATATTTTTTTAAT
74164859 TTTAATATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 8 0.42
23 3 0.16
24 8 0.42
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (22 bp):
ATATATATATATTTTTTTAATC
Found at i:74164855 original size:28 final size:27
Alignment explanation
Indices: 74164815--74164891 Score: 86
Period size: 28 Copynumber: 2.8 Consensus size: 27
74164805 ATATACTAAA
* *
74164815 TATATATATTTTTATTTTTAATCATATT
1 TATATATTTTTTTATTTTTAAT-ATAAT
*
74164843 TATATATTTTTTTAATTTTAATATAAT
1 TATATATTTTTTTATTTTTAATATAAT
74164870 TA-AT-TTTTATTATATTTTTAAT
1 TATATATTTT-TT-TATTTTTAAT
74164892 TTGTGTATTG
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
25 4 0.09
26 4 0.09
27 15 0.35
28 20 0.47
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (27 bp):
TATATATTTTTTTATTTTTAATATAAT
Found at i:74168241 original size:16 final size:16
Alignment explanation
Indices: 74168208--74168248 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 16
74168198 ATGTGAAGAA
74168208 TATTATTTAAAATCAT
1 TATTATTTAAAATCAT
74168224 TATT-TTTAAAAT--T
1 TATTATTTAAAATCAT
74168237 TATTA-TTAAAAT
1 TATTATTTAAAAT
74168249 AAAATTTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
13 12 0.50
15 8 0.33
16 4 0.17
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (16 bp):
TATTATTTAAAATCAT
Found at i:74168268 original size:18 final size:18
Alignment explanation
Indices: 74168230--74168265 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
74168220 TCATTATTTT
*
74168230 TAAAATTTATTATTAAAA
1 TAAAATTTAATATTAAAA
74168248 TAAAATTTAAATATTAAA
1 TAAAATTT-AATATTAAA
74168266 TAATTTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (18 bp):
TAAAATTTAATATTAAAA
Found at i:74168284 original size:34 final size:29
Alignment explanation
Indices: 74168229--74168306 Score: 79
Period size: 29 Copynumber: 2.6 Consensus size: 29
74168219 ATCATTATTT
*
74168229 TTAA-AATTTATTATTAAAATAAAATTTAAATA
1 TTAATAATTTATTATAAAAAT-AAA-TT--ATA
74168261 TTAAATAATTTATTA-AAATAATAAATTATA
1 TT-AATAATTTATTATAAA-AATAAATTATA
74168291 TTAATAATTTATTATA
1 TTAATAATTTATTATA
74168307 TGACTAAATA
Statistics
Matches: 41, Mismatches: 1, Indels: 10
0.79 0.02 0.19
Matches are distributed among these distances:
29 12 0.29
30 6 0.15
32 4 0.10
33 7 0.17
34 12 0.29
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (29 bp):
TTAATAATTTATTATAAAAATAAATTATA
Found at i:74168304 original size:16 final size:16
Alignment explanation
Indices: 74168258--74168307 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
74168248 TAAAATTTAA
74168258 ATATTAAATAATTTATT
1 ATATT-AATAATTTATT
**
74168275 A-A--AATAATAAATT
1 ATATTAATAATTTATT
74168288 ATATTAATAATTTATT
1 ATATTAATAATTTATT
74168304 ATAT
1 ATAT
74168308 GACTAAATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 7
0.70 0.11 0.19
Matches are distributed among these distances:
13 10 0.38
14 1 0.04
16 14 0.54
17 1 0.04
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
ATATTAATAATTTATT
Found at i:74168315 original size:29 final size:30
Alignment explanation
Indices: 74168239--74168304 Score: 91
Period size: 29 Copynumber: 2.2 Consensus size: 30
74168229 TTAAAATTTA
*
74168239 TTATTAAAATAA-AATTTAAATATTAAATAAT
1 TTATTAAAATAATAAATT--ATATTAAATAAT
74168270 TTATTAAAATAATAAATTATATT-AATAAT
1 TTATTAAAATAATAAATTATATTAAATAAT
74168299 TTATTA
1 TTATTA
74168305 TATGACTAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
29 12 0.36
30 5 0.15
31 12 0.36
32 4 0.12
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (30 bp):
TTATTAAAATAATAAATTATATTAAATAAT
Found at i:74179241 original size:51 final size:51
Alignment explanation
Indices: 74179177--74179277 Score: 130
Period size: 51 Copynumber: 2.0 Consensus size: 51
74179167 TTTTTAGATA
*
74179177 TTGACATATTAACTATTCTGGAGCTTTCAACTAATTTTGTACAACCAAATG
1 TTGACATATTAACTATTCTGAAGCTTTCAACTAATTTTGTACAACCAAATG
* * * ** **
74179228 TTGATATATTAACTCTTTTGAAGCTTTTGACTAATTTTGTATTACCAAAT
1 TTGACATATTAACTATTCTGAAGCTTTCAACTAATTTTGTACAACCAAAT
74179278 ATTGGAATAA
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
51 42 1.00
ACGTcount: A:0.32, C:0.15, G:0.11, T:0.43
Consensus pattern (51 bp):
TTGACATATTAACTATTCTGAAGCTTTCAACTAATTTTGTACAACCAAATG
Found at i:74181493 original size:15 final size:15
Alignment explanation
Indices: 74181470--74181503 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
74181460 TTCCTAGTGG
*
74181470 ATGATAATGATGATC
1 ATGACAATGATGATC
*
74181485 ATGACAATGATGATG
1 ATGACAATGATGATC
74181500 ATGA
1 ATGA
74181504 TGTTGCATTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.41, C:0.06, G:0.24, T:0.29
Consensus pattern (15 bp):
ATGACAATGATGATC
Found at i:74187667 original size:7 final size:7
Alignment explanation
Indices: 74187651--74187683 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
74187641 ATAGTAACTA
*
74187651 TAAAAAT
1 TAAAATT
74187658 TAAAATT
1 TAAAATT
74187665 TAAAATT
1 TAAAATT
74187672 TAAAATT
1 TAAAATT
74187679 TAAAA
1 TAAAA
74187684 GCGTATACAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (7 bp):
TAAAATT
Found at i:74188755 original size:18 final size:18
Alignment explanation
Indices: 74188729--74188767 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
74188719 TAAAATTTTC
*
74188729 TTTTAAAAAAATTAT-AA
1 TTTTTAAAAAATTATAAA
*
74188746 TTTTTTAAAAATTATAAA
1 TTTTTAAAAAATTATAAA
74188764 TTTT
1 TTTT
74188768 ATAATTTTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 13 0.68
18 6 0.32
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TTTTTAAAAAATTATAAA
Found at i:74190176 original size:23 final size:23
Alignment explanation
Indices: 74190126--74190176 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 23
74190116 TTTTCATGTT
74190126 TTTTA-AAATTATTATATATATA
1 TTTTATAAATTATTATATATATA
*
74190148 TATTATAAATTACTGTAT-TAT-TA
1 TTTTATAAATTA-T-TATATATATA
74190171 TTTTAT
1 TTTTAT
74190177 CATTTTTTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
22 4 0.17
23 13 0.54
24 4 0.17
25 3 0.12
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (23 bp):
TTTTATAAATTATTATATATATA
Found at i:74191103 original size:30 final size:27
Alignment explanation
Indices: 74191069--74191131 Score: 81
Period size: 30 Copynumber: 2.2 Consensus size: 27
74191059 GTTCGTGAAT
*
74191069 TTTAAACAAACGAATATGAACACACATAAA
1 TTTAAACAAACGAACATGAACA-A-A-AAA
*
74191099 TTTAAATAAACGAACATGAACAAAAAA
1 TTTAAACAAACGAACATGAACAAAAAA
74191126 TTTAAA
1 TTTAAA
74191132 ATTTTTAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
27 9 0.29
28 1 0.03
29 1 0.03
30 20 0.65
ACGTcount: A:0.59, C:0.13, G:0.06, T:0.22
Consensus pattern (27 bp):
TTTAAACAAACGAACATGAACAAAAAA
Found at i:74192312 original size:7 final size:7
Alignment explanation
Indices: 74192300--74192325 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
74192290 GATATGCGTT
74192300 TGCAGAC
1 TGCAGAC
74192307 TGCAGAC
1 TGCAGAC
74192314 TGCAGAC
1 TGCAGAC
74192321 TGCAG
1 TGCAG
74192326 TGCGCAGTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.27, G:0.31, T:0.15
Consensus pattern (7 bp):
TGCAGAC
Found at i:74198567 original size:17 final size:17
Alignment explanation
Indices: 74198526--74198558 Score: 50
Period size: 16 Copynumber: 1.9 Consensus size: 17
74198516 AAAAACATAT
74198526 TTAATATTAATAATAATA
1 TTAA-ATTAATAATAATA
74198544 TTAAATTAA-AATAAT
1 TTAAATTAATAATAAT
74198559 GTATAAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 5 0.33
18 4 0.27
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (17 bp):
TTAAATTAATAATAATA
Found at i:74201209 original size:21 final size:21
Alignment explanation
Indices: 74201185--74201228 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
74201175 TTTTGTTACA
74201185 ATGGCTTCTACAGATTCATCC
1 ATGGCTTCTACAGATTCATCC
74201206 ATGGCTTCTACAGATTCATCC
1 ATGGCTTCTACAGATTCATCC
74201227 AT
1 AT
74201229 TCTTTGGCAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.25, C:0.27, G:0.14, T:0.34
Consensus pattern (21 bp):
ATGGCTTCTACAGATTCATCC
Found at i:74211578 original size:196 final size:195
Alignment explanation
Indices: 74211220--74211604 Score: 509
Period size: 196 Copynumber: 2.0 Consensus size: 195
74211210 AAATGCTACT
* * * *
74211220 GTGTTGATATATTTGAACATACCGTATTGCATTGCATGGCTTGGGACGTTATGAATGAAGGAAGT
1 GTGTTGATATATTTGAACATACCATATTGCATCGCATGGCGTGGGACGTTATGAATGAAGAAAGT
* * * *
74211285 ATTGATAGTTTATCTACATTATTTTGTTGTGTTCTCACAACCATAGGTAGATTCCATCTACGACG
66 ATTGACAGTTTATCTACATTATTTTGTTCTGTTCTCACAACAATAGGCAGATTCCATCTACGACG
** * * ** *
74211350 GTCTTGTTATGAACCCACAACCATCGGTAGATTCCATCTGCGATGTTTTTGTTGTGCATCTACAA
131 GTCTTACTATGAACCCACAACCATAGGTAGATTCCATCTGCAACATTTTTGCTGTGCATCTACAA
* * * *
74211415 GTGTTGATCTATTTTAAGCATACCATATTGCATCGCATGGGGTGGGACGTTATGAATGGAGAAAG
1 GTGTTGATATATTTGAA-CATACCATATTGCATCGCATGGCGTGGGACGTTATGAATGAAGAAAG
** * * ** *
74211480 TATTGACAGTTTATCTGTATTATTTTTTTCTGTTCTCACAACAATATGCAGATTCCATCTGTGAT
65 TATTGACAGTTTATCTACATTATTTTGTTCTGTTCTCACAACAATAGGCAGATTCCATCTACGAC
* *
74211545 GGTTTTACTATGTACCCACAACCATAGGTAGATTCCATCTGCAACATTTTTGCTGTGCAT
130 GGTCTTACTATGAACCCACAACCATAGGTAGATTCCATCTGCAACATTTTTGCTGTGCAT
74211605 TCACAACCCA
Statistics
Matches: 161, Mismatches: 28, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
195 15 0.09
196 146 0.91
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37
Consensus pattern (195 bp):
GTGTTGATATATTTGAACATACCATATTGCATCGCATGGCGTGGGACGTTATGAATGAAGAAAGT
ATTGACAGTTTATCTACATTATTTTGTTCTGTTCTCACAACAATAGGCAGATTCCATCTACGACG
GTCTTACTATGAACCCACAACCATAGGTAGATTCCATCTGCAACATTTTTGCTGTGCATCTACAA
Found at i:74213618 original size:13 final size:13
Alignment explanation
Indices: 74213600--74213625 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
74213590 AAAGAACTTG
74213600 AAGATTTTTTATT
1 AAGATTTTTTATT
74213613 AAGATTTTTTATT
1 AAGATTTTTTATT
74213626 TATTAAGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
AAGATTTTTTATT
Found at i:74214845 original size:16 final size:17
Alignment explanation
Indices: 74214824--74214861 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
74214814 TTTTATATGG
*
74214824 ATTTTACT-TTTATTTT
1 ATTTTACTATGTATTTT
74214840 ATTTTACTACTGTATTTT
1 ATTTTACTA-TGTATTTT
74214858 ATTT
1 ATTT
74214862 AAATAAGGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 8 0.42
18 11 0.58
ACGTcount: A:0.21, C:0.08, G:0.03, T:0.68
Consensus pattern (17 bp):
ATTTTACTATGTATTTT
Found at i:74218978 original size:5 final size:5
Alignment explanation
Indices: 74218968--74219000 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
74218958 CCAATTTGTA
74218968 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
74219001 GAACACATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:74220844 original size:17 final size:17
Alignment explanation
Indices: 74220815--74220850 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
74220805 TTTTTTTAGT
74220815 TAAAATAAAGTTAATGAA
1 TAAAATAAAGTTAAT-AA
74220833 TAAAAT-AAGTTAATAA
1 TAAAATAAAGTTAATAA
74220849 TA
1 TA
74220851 TGGTTAGTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 4 0.22
17 8 0.44
18 6 0.33
ACGTcount: A:0.61, C:0.00, G:0.08, T:0.31
Consensus pattern (17 bp):
TAAAATAAAGTTAATAA
Found at i:74223551 original size:14 final size:14
Alignment explanation
Indices: 74223529--74223579 Score: 59
Period size: 14 Copynumber: 3.6 Consensus size: 14
74223519 TCAAAGATTC
*
74223529 ATTAATTTTATATA
1 ATTATTTTTATATA
74223543 ATTATTTTTATA-A
1 ATTATTTTTATATA
*
74223556 ATATATTTTTACATA
1 AT-TATTTTTATATA
*
74223571 ATTCTTTTT
1 ATTATTTTT
74223580 TCAATCATAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
13 3 0.09
14 26 0.81
15 3 0.09
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (14 bp):
ATTATTTTTATATA
Found at i:74230655 original size:18 final size:18
Alignment explanation
Indices: 74230632--74230669 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
74230622 TTACCATGAG
*
74230632 ATAAAATAAGATCATCTT
1 ATAAAATAAGATCATATT
*
74230650 ATAAAATAAGTTCATATT
1 ATAAAATAAGATCATATT
74230668 AT
1 AT
74230670 GAGAATGTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.08, G:0.05, T:0.37
Consensus pattern (18 bp):
ATAAAATAAGATCATATT
Found at i:74237524 original size:52 final size:52
Alignment explanation
Indices: 74237457--74237561 Score: 201
Period size: 52 Copynumber: 2.0 Consensus size: 52
74237447 ATGTTTTAAG
*
74237457 TGTATGTTTTGATTGTTTTGGTCATGGGATGGTTTGTGTTTTATGTGTACCT
1 TGTATATTTTGATTGTTTTGGTCATGGGATGGTTTGTGTTTTATGTGTACCT
74237509 TGTATATTTTGATTGTTTTGGTCATGGGATGGTTTGTGTTTTATGTGTACCT
1 TGTATATTTTGATTGTTTTGGTCATGGGATGGTTTGTGTTTTATGTGTACCT
74237561 T
1 T
74237562 ATTGGGCAAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.12, C:0.06, G:0.28, T:0.54
Consensus pattern (52 bp):
TGTATATTTTGATTGTTTTGGTCATGGGATGGTTTGTGTTTTATGTGTACCT
Found at i:74237544 original size:25 final size:25
Alignment explanation
Indices: 74237464--74237544 Score: 67
Period size: 25 Copynumber: 3.2 Consensus size: 25
74237454 AAGTGTATGT
74237464 TTTGATTGTTTTGGTCATGGGATGG
1 TTTGATTGTTTTGGTCATGGGATGG
* * * **
74237489 TTTG--TGTTTTATGTGTACCTTGTATAT
1 TTTGATTG-TTT-TG-GT-CATGGGATGG
74237516 TTTGATTGTTTTGGTCATGGGATGG
1 TTTGATTGTTTTGGTCATGGGATGG
74237541 TTTG
1 TTTG
74237545 TGTTTTATGT
Statistics
Matches: 40, Mismatches: 10, Indels: 12
0.65 0.16 0.19
Matches are distributed among these distances:
23 2 0.05
24 3 0.08
25 15 0.38
26 4 0.10
27 11 0.28
28 3 0.08
29 2 0.05
ACGTcount: A:0.12, C:0.05, G:0.30, T:0.53
Consensus pattern (25 bp):
TTTGATTGTTTTGGTCATGGGATGG
Found at i:74246476 original size:17 final size:17
Alignment explanation
Indices: 74246454--74246507 Score: 58
Period size: 16 Copynumber: 3.2 Consensus size: 17
74246444 ACGTGTTTTT
*
74246454 ATTTTTTATAATTTTGA
1 ATTTTTTATAATTTTAA
74246471 ATTTTTTAT--TCTTTAA
1 ATTTTTTATAAT-TTTAA
*
74246487 ATATTTTATAATTTTTAA
1 ATTTTTTATAA-TTTTAA
74246505 ATT
1 ATT
74246508 ATTTGTTGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
15 1 0.03
16 12 0.40
17 9 0.30
18 7 0.23
19 1 0.03
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (17 bp):
ATTTTTTATAATTTTAA
Found at i:74252899 original size:17 final size:18
Alignment explanation
Indices: 74252864--74252922 Score: 59
Period size: 17 Copynumber: 3.3 Consensus size: 18
74252854 CCCTTCATAT
**
74252864 TTTTTTAGTACTT-AGAA
1 TTTTTTAGTACTTCCTAA
*
74252881 TTTTTTA-TATTTCCTAA
1 TTTTTTAGTACTTCCTAA
74252898 TTTTTCTTAGTACTTCCTAA
1 -TTTT-TTAGTACTTCCTAA
74252918 TTTTT
1 TTTTT
74252923 GGTATCCCCT
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
16 4 0.12
17 9 0.26
18 5 0.15
19 7 0.21
20 9 0.26
ACGTcount: A:0.22, C:0.12, G:0.05, T:0.61
Consensus pattern (18 bp):
TTTTTTAGTACTTCCTAA
Found at i:74252963 original size:20 final size:20
Alignment explanation
Indices: 74252915--74253086 Score: 90
Period size: 20 Copynumber: 8.7 Consensus size: 20
74252905 TAGTACTTCC
* *
74252915 TAATTTTTGGTATCCCCTCA
1 TAATTTTTGGTATTCTCTCA
* *
74252935 T-GTTATTTGGTATTCTCTCG
1 TAATT-TTTGGTATTCTCTCA
74252955 TAATTTTTGAG-ACTTC-CTCA
1 TAATTTTTG-GTA-TTCTCTCA
* *
74252975 TATTTTTTGGTATT-TACTTA
1 TAATTTTTGGTATTCT-CTCA
* *
74252995 TAATTTTTTGTGTTCTCTCA
1 TAATTTTTGGTATTCTCTCA
* * *
74253015 T-ATTTTTGGTGTTCCCTTA
1 TAATTTTTGGTATTCTCTCA
* *
74253034 GAAATTTTGGTACTT-TCTCA
1 TAATTTTTGGTA-TTCTCTCA
* *
74253054 -ACAATTTTGATACTTC-CTCA
1 TA-ATTTTTGGTA-TTCTCTCA
74253074 TAATTTTTGGTAT
1 TAATTTTTGGTAT
74253087 GGTCTTAAAA
Statistics
Matches: 116, Mismatches: 23, Indels: 27
0.70 0.14 0.16
Matches are distributed among these distances:
19 22 0.19
20 84 0.72
21 10 0.09
ACGTcount: A:0.20, C:0.16, G:0.12, T:0.52
Consensus pattern (20 bp):
TAATTTTTGGTATTCTCTCA
Found at i:74253617 original size:20 final size:20
Alignment explanation
Indices: 74253513--74253640 Score: 74
Period size: 20 Copynumber: 6.5 Consensus size: 20
74253503 GTCAAAACTT
* *
74253513 AATTTTGAAAGGATATCC-AA
1 AATTATGAAGGGATA-CCAAA
* *
74253533 AATTTTG-AGGGCATACAAAA
1 AATTATGAAGGG-ATACCAAA
* *
74253553 AATTATG-AGAGAACACCAAA
1 AATTATGAAG-GGATACCAAA
*
74253573 AATTA-G-A-GGCTA-CAAA
1 AATTATGAAGGGATACCAAA
*
74253589 TAATTATGAAGGGGTACCAAA
1 -AATTATGAAGGGATACCAAA
*
74253610 AGTTATG-AGAGGATACCAAA
1 AATTATGAAG-GGATACCAAA
74253630 AATTATGAAGG
1 AATTATGAAGG
74253641 TCTAACATTC
Statistics
Matches: 85, Mismatches: 13, Indels: 20
0.72 0.11 0.17
Matches are distributed among these distances:
16 4 0.05
17 7 0.08
18 1 0.01
19 9 0.11
20 57 0.67
21 7 0.08
ACGTcount: A:0.47, C:0.10, G:0.20, T:0.23
Consensus pattern (20 bp):
AATTATGAAGGGATACCAAA
Found at i:74254625 original size:45 final size:45
Alignment explanation
Indices: 74254533--74254671 Score: 149
Period size: 45 Copynumber: 3.1 Consensus size: 45
74254523 ACCACTGGAA
* *
74254533 TGTGGATACGCAACAAAAT-TAGCAGATGAAACCTGCAACTCA-GC
1 TGTGGATACGCAACAAAATATCGCAGATGAAACCTGCCACT-AGGC
* * *
74254577 TGTGGGTACGCAACAAAATATCGCAGATAAAATCTGCCACTAGGC
1 TGTGGATACGCAACAAAATATCGCAGATGAAACCTGCCACTAGGC
** * * *
74254622 TGTGGATACTAAACAAAA-ATTCGCAGATGAAACCTACCACTGGGT
1 TGTGGATACGCAACAAAATA-TCGCAGATGAAACCTGCCACTAGGC
74254667 TGTGG
1 TGTGG
74254672 GTGCACATCA
Statistics
Matches: 79, Mismatches: 13, Indels: 5
0.81 0.13 0.05
Matches are distributed among these distances:
44 20 0.25
45 59 0.75
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (45 bp):
TGTGGATACGCAACAAAATATCGCAGATGAAACCTGCCACTAGGC
Found at i:74255232 original size:28 final size:29
Alignment explanation
Indices: 74255191--74255260 Score: 74
Period size: 28 Copynumber: 2.5 Consensus size: 29
74255181 AGCAAAACTA
*
74255191 AAAAATTTG-AAAACAAGAGA-AAAATT-T
1 AAAAATCTGAAAAACAAG-GACAAAATTGT
* *
74255218 TAAAATCTGAAAAACATGGACAAAATTGT
1 AAAAATCTGAAAAACAAGGACAAAATTGT
*
74255247 AAAAATCTAAAAAA
1 AAAAATCTGAAAAA
74255261 ATAGGGGGAA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
27 9 0.26
28 13 0.37
29 13 0.37
ACGTcount: A:0.61, C:0.07, G:0.10, T:0.21
Consensus pattern (29 bp):
AAAAATCTGAAAAACAAGGACAAAATTGT
Found at i:74255306 original size:27 final size:28
Alignment explanation
Indices: 74255256--74255336 Score: 83
Period size: 28 Copynumber: 2.9 Consensus size: 28
74255246 TAAAAATCTA
*
74255256 AAAAAATAGGGGGAAAACTATAAAATGT
1 AAAAAATAGGGGCAAAACTATAAAATGT
* * *
74255284 AAAAAATA-GGGCAAATCTGTAAAATTT
1 AAAAAATAGGGGCAAAACTATAAAATGT
* * * *
74255311 AGAAAACATGGGCCAAACTATAAAAT
1 AAAAAATAGGGGCAAAACTATAAAAT
74255337 ATGGAAAATA
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
27 21 0.49
28 22 0.51
ACGTcount: A:0.54, C:0.09, G:0.17, T:0.20
Consensus pattern (28 bp):
AAAAAATAGGGGCAAAACTATAAAATGT
Found at i:74255316 original size:28 final size:28
Alignment explanation
Indices: 74255240--74255308 Score: 70
Period size: 27 Copynumber: 2.5 Consensus size: 28
74255230 AACATGGACA
*
74255240 AAAT-TGTAAAAATCTAAAAAAATAGGGGG
1 AAATCTGT-AAAATCT-AAAAAATAGGGGC
* * *
74255269 AAAACTATAAAATGTAAAAAATA-GGGC
1 AAATCTGTAAAATCTAAAAAATAGGGGC
74255296 AAATCTGTAAAAT
1 AAATCTGTAAAAT
74255309 TTAGAAAACA
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
27 14 0.42
28 8 0.24
29 9 0.27
30 2 0.06
ACGTcount: A:0.57, C:0.06, G:0.16, T:0.22
Consensus pattern (28 bp):
AAATCTGTAAAATCTAAAAAATAGGGGC
Found at i:74264194 original size:4 final size:4
Alignment explanation
Indices: 74264187--74264238 Score: 62
Period size: 4 Copynumber: 14.5 Consensus size: 4
74264177 GAGGAAGGAG
74264187 AAGA AAGA AAGA AAG- AAG- AAG- AAG- AAG- AAG- AAGA AAGA AAGA
1 AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA
74264229 AAGA AAGA AA
1 AAGA AAGA AA
74264239 AAGAGGTATG
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 18 0.38
4 29 0.62
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (4 bp):
AAGA
Found at i:74264221 original size:30 final size:31
Alignment explanation
Indices: 74264166--74264242 Score: 111
Period size: 30 Copynumber: 2.5 Consensus size: 31
74264156 AAAAAAGAGG
* * *
74264166 GAAAGAAAGGAGAGGAAGGAGAAGAAAGAAA
1 GAAAGAAAGAAGAAGAAGAAGAAGAAAGAAA
74264197 GAAAG-AAGAAGAAGAAGAAGAAGAAAGAAA
1 GAAAGAAAGAAGAAGAAGAAGAAGAAAGAAA
*
74264227 GAAAGAAAGAAAAAGA
1 GAAAGAAAGAAGAAGA
74264243 GGTATGTATT
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
30 27 0.66
31 14 0.34
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (31 bp):
GAAAGAAAGAAGAAGAAGAAGAAGAAAGAAA
Found at i:74264232 original size:12 final size:11
Alignment explanation
Indices: 74264185--74264242 Score: 63
Period size: 10 Copynumber: 5.5 Consensus size: 11
74264175 GAGAGGAAGG
74264185 AGAAGAAAGAA
1 AGAAGAAAGAA
74264196 AGAA-AGAAG-A
1 AGAAGA-AAGAA
74264206 AGAAG-AAG-A
1 AGAAGAAAGAA
74264215 AGAAGAAAGAA
1 AGAAGAAAGAA
74264226 AGAAAGAAAGAA
1 AG-AAGAAAGAA
74264238 A-AAGA
1 AGAAGA
74264243 GGTATGTATT
Statistics
Matches: 42, Mismatches: 0, Indels: 11
0.79 0.00 0.21
Matches are distributed among these distances:
9 9 0.21
10 13 0.31
11 10 0.24
12 10 0.24
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (11 bp):
AGAAGAAAGAA
Found at i:74264233 original size:27 final size:26
Alignment explanation
Indices: 74264166--74264229 Score: 92
Period size: 27 Copynumber: 2.4 Consensus size: 26
74264156 AAAAAAGAGG
* * *
74264166 GAAAGAAAGGAGAGGAAGGAGAAGAAA
1 GAAAGAAAGAAGAAGAAGAAGAAG-AA
74264193 GAAAGAAAGAAGAAGAAGAAGAAGAA
1 GAAAGAAAGAAGAAGAAGAAGAAGAA
74264219 GAAAGAAAGAA
1 GAAAGAAAGAA
74264230 AGAAAGAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
26 13 0.38
27 21 0.62
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (26 bp):
GAAAGAAAGAAGAAGAAGAAGAAGAA
Found at i:74264509 original size:103 final size:102
Alignment explanation
Indices: 74264369--74265006 Score: 917
Period size: 101 Copynumber: 6.2 Consensus size: 102
74264359 ATGGTTTAAT
* * * * * *
74264369 TTTTTTATGAATGTAAAATTGTTTTTATAATTATTTTAAAATTATTTTGTCAGTAATTTATGATT
1 TTTTTTATTAATGT-AAATT-TTTTAAAAATTATTTTATAGTTATTTTGTTAGTAATTTATGATT
** * * * *
74264434 TTGTTATAATTTGTTTGTGTTTTAGTTTAGTATTTTGGGA
64 AGGTTATAAATTGTTAGTG-TTTAGTTTAGTGTTTTGTGA
* ** * *
74264474 ATTTTTATTAATGT-AATTTTAAAAAAAATTATTTTATAGTTATTTTGTTAATTATTTATGATTA
1 TTTTTTATTAATGTAAATTTT-TTAAAAATTATTTTATAGTTATTTTGTTAGTAATTTATGATTA
*
74264538 GATTATAAATTGTT-GTGTTTAGTTTAGTGTTTTGTGA
65 GGTTATAAATTGTTAGTGTTTAGTTTAGTGTTTTGTGA
** *
74264575 TTTTTTTATTAATGTAAATTTTAAAAAAATAATTTTATAGTTATTTTGTTAGTAATTTATGATTA
1 -TTTTTTATTAATGTAAATTTTTTAAAAATTATTTTATAGTTATTTTGTTAGTAATTTATGATTA
*
74264640 GGTTATAAATTGTTAGTGTTTAGTTTAGTGTTTTTTGA
65 GGTTATAAATTGTTAGTGTTTAGTTTAGTGTTTTGTGA
*
74264678 TTTTTTAGTAATGTAAATTTTTTAAAAATT-TTTTATAGTTATTTTGTTAGTAATTTATGATTAG
1 TTTTTTATTAATGTAAATTTTTTAAAAATTATTTTATAGTTATTTTGTTAGTAATTTATGATTAG
74264742 GTTATAAATTGTTAGTGTTTAGTTTAGTGTTTTGTGA
66 GTTATAAATTGTTAGTGTTTAGTTTAGTGTTTTGTGA
* * *
74264779 TTTTTTAGTAATGTATAATTTTTTTAAAATTTTTTTATAGTTATTTTGTTAGTAATTTATGATTA
1 TTTTTTATTAATGTA-AATTTTTTAAAAATTATTTTATAGTTATTTTGTTAGTAATTTATGATTA
74264844 GGTTATAAATTGTTAGTGTTTAGTTTAGTGTTTTGTGA
65 GGTTATAAATTGTTAGTGTTTAGTTTAGTGTTTTGTGA
* *
74264882 -TTTTT-TTAATGTAAAATTTTTTTAAAATTTTTTTATAGTTATTTTGTTAGTAATTTATGATTA
1 TTTTTTATTAATGT-AAATTTTTTAAAAATTATTTTATAGTTATTTTGTTAGTAATTTATGATTA
74264945 GGTTATAAATTGTTAGTGTTTAGTTTAGTGTTTTGTGA
65 GGTTATAAATTGTTAGTGTTTAGTTTAGTGTTTTGTGA
*
74264983 TTTTTTATGAATGTAAATTTTTTA
1 TTTTTTATTAATGTAAATTTTTTA
74265007 TAATGTAATT
Statistics
Matches: 492, Mismatches: 32, Indels: 21
0.90 0.06 0.04
Matches are distributed among these distances:
101 196 0.40
102 131 0.27
103 153 0.31
105 12 0.02
ACGTcount: A:0.28, C:0.00, G:0.14, T:0.57
Consensus pattern (102 bp):
TTTTTTATTAATGTAAATTTTTTAAAAATTATTTTATAGTTATTTTGTTAGTAATTTATGATTAG
GTTATAAATTGTTAGTGTTTAGTTTAGTGTTTTGTGA
Found at i:74264772 original size:204 final size:202
Alignment explanation
Indices: 74264401--74265003 Score: 888
Period size: 204 Copynumber: 3.0 Consensus size: 202
74264391 TTTTATAATT
* * * ** * * *
74264401 ATTTTAAAATTATTTTGTCAGTAATTTATGATTTTGTTATAATTTGTTTGTGTTTTAGTTTAGTA
1 ATTTTATAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTAGTG-TTTAGTTTAGTG
* * ** * *
74264466 TTTTGGGAATTTTTATTAATGT-AATTTTAAAAAAAATTATTTTATAGTTATTTTGTTAATTATT
65 TTTTGTGATTTTTTA-TAATGTAAATTTT-TTAAAAATT-TTTTATAGTTATTTTGTTAGTAATT
*
74264530 TATGATTAGATTATAAATTGTT-GTGTTTAGTTTAGTGTTTTGTGATTTTTTTATTAATGTAAAT
127 TATGATTAGGTTATAAATTGTTAGTGTTTAGTTTAGTGTTTTGTGA-TTTTTTATTAATGTAAAT
74264594 TTTAAAAAAATA
191 TTTAAAAAAATA
74264606 ATTTTATAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTAGTGTTTAGTTTAGTGT
1 ATTTTATAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTAGTGTTTAGTTTAGTGT
*
74264671 TTTTTGATTTTTTAGTAATGTAAATTTTTTAAAAATTTTTTATAGTTATTTTGTTAGTAATTTAT
66 TTTGTGATTTTTTA-TAATGTAAATTTTTTAAAAATTTTTTATAGTTATTTTGTTAGTAATTTAT
*
74264736 GATTAGGTTATAAATTGTTAGTGTTTAGTTTAGTGTTTTGTGATTTTTTAGTAATGTATAATTTT
130 GATTAGGTTATAAATTGTTAGTGTTTAGTTTAGTGTTTTGTGATTTTTTATTAATGTA-AATTTT
*** *
74264801 TTTAAAATT
194 AAAAAAATA
*
74264810 TTTTTATAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTAGTGTTTAGTTTAGTGT
1 ATTTTATAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTAGTGTTTAGTTTAGTGT
*
74264875 TTTGTGATTTTTT-TAATGTAAAATTTTTTTAAAATTTTTTTATAGTTATTTTGTTAGTAATTTA
66 TTTGTGATTTTTTATAATGT-AAA-TTTTTTAAAAATTTTTTATAGTTATTTTGTTAGTAATTTA
*
74264939 TGATTAGGTTATAAATTGTTAGTGTTTAGTTTAGTGTTTTGTGATTTTTTATGAATGTAAATTTT
129 TGATTAGGTTATAAATTGTTAGTGTTTAGTTTAGTGTTTTGTGATTTTTTATTAATGTAAATTTT
74265004 TTATAATGTA
Statistics
Matches: 366, Mismatches: 27, Indels: 12
0.90 0.07 0.03
Matches are distributed among these distances:
202 6 0.02
203 67 0.18
204 242 0.66
205 51 0.14
ACGTcount: A:0.28, C:0.00, G:0.15, T:0.57
Consensus pattern (202 bp):
ATTTTATAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTAGTGTTTAGTTTAGTGT
TTTGTGATTTTTTATAATGTAAATTTTTTAAAAATTTTTTATAGTTATTTTGTTAGTAATTTATG
ATTAGGTTATAAATTGTTAGTGTTTAGTTTAGTGTTTTGTGATTTTTTATTAATGTAAATTTTAA
AAAAATA
Found at i:74265011 original size:16 final size:16
Alignment explanation
Indices: 74264982--74265018 Score: 58
Period size: 17 Copynumber: 2.3 Consensus size: 16
74264972 GTGTTTTGTG
74264982 ATTTTTTATGAATGTAA
1 ATTTTTTATGAATGT-A
74264999 ATTTTTTAT-AATGTA
1 ATTTTTTATGAATGTA
74265014 ATTTT
1 ATTTT
74265019 ATTTGATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 6 0.30
16 5 0.25
17 9 0.45
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.59
Consensus pattern (16 bp):
ATTTTTTATGAATGTA
Found at i:74269162 original size:79 final size:81
Alignment explanation
Indices: 74269045--74269229 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
74269035 GCTACTCGTT
* *
74269045 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGG-CTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
*
74269108 GGATTTAGTAACTCA-CA
64 GGATATAGTAACTCAGCA
* **
74269125 CAAATGCCTTCGGGCTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* * *
74269189 ATATGGTCACTTAGCA
66 ATATAGTAACTCAGCA
*
74269205 CAAA-GCCTTCAGGACTTAGCCCGGA
1 CAAATGCCTTC-GGGCTTAGCCCGGA
74269230 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTCAGCA
Found at i:74269166 original size:39 final size:40
Alignment explanation
Indices: 74269045--74269229 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
74269035 GCTACTCGTT
*
74269045 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
74269085 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
74269125 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
74269164 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
74269205 CAAA-GCCTTCAGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
74269230 CATCATTCAA
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 78 0.62
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:74277044 original size:40 final size:40
Alignment explanation
Indices: 74277014--74277197 Score: 198
Period size: 40 Copynumber: 4.6 Consensus size: 40
74277004 GCTACTCGTT
* *
74277014 CAAATGCCTTTGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
74277054 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
74277094 CAAATGCCTTCGGG-CTTAGCCC-GTAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* ** * * *
74277133 CAAATGCCTTC-GGATCTTAGTCCGAATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
74277174 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
74277198 ACATCATTCA
Statistics
Matches: 120, Mismatches: 16, Indels: 16
0.79 0.11 0.11
Matches are distributed among these distances:
37 1 0.01
38 3 0.03
39 29 0.24
40 73 0.61
41 14 0.12
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:74277182 original size:79 final size:80
Alignment explanation
Indices: 74277014--74277196 Score: 212
Period size: 79 Copynumber: 2.3 Consensus size: 80
74277004 GCTACTCGTT
* * *
74277014 CAAATGCCTTTGGGACATAGCCCGGTTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCC-GTAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* * *
74277078 GATTTAGTAACTCGCA
65 AATATAGTAACTAGCA
* **
74277094 CAAATGCCTTCGGG-CTTAGCCCGTAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGTAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
* *
74277157 AATATGGTCACTTAGCA
65 AATATAGTAAC-TAGCA
74277174 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
74277197 GACATCATTC
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 6 0.07
79 52 0.59
80 30 0.34
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGTAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGA
ATATAGTAACTAGCA
Found at i:74279431 original size:21 final size:21
Alignment explanation
Indices: 74279391--74279471 Score: 103
Period size: 21 Copynumber: 4.0 Consensus size: 21
74279381 CGAATATGCC
*
74279391 AACAGAAGCTCG-AA-AGCTT
1 AACAAAAGCTCGTAAGAGCTT
74279410 AACAAAAGCTCGTAAGAGCTT
1 AACAAAAGCTCGTAAGAGCTT
* *
74279431 AACAGAAGCTCGTAAGAGCTG
1 AACAAAAGCTCGTAAGAGCTT
* *
74279452 AATAAAAGCTCATAAGAGCT
1 AACAAAAGCTCGTAAGAGCT
74279472 AATCCACCCA
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
19 11 0.20
20 2 0.04
21 41 0.76
ACGTcount: A:0.43, C:0.19, G:0.21, T:0.17
Consensus pattern (21 bp):
AACAAAAGCTCGTAAGAGCTT
Found at i:74279468 original size:42 final size:40
Alignment explanation
Indices: 74279391--74279471 Score: 117
Period size: 42 Copynumber: 2.0 Consensus size: 40
74279381 CGAATATGCC
* *
74279391 AACAGAAGCTCGAAAGCTTAACAAAAGCTCGTAAGAGCTT
1 AACAGAAGCTCGAAAGCTGAACAAAAGCTCATAAGAGCTT
*
74279431 AACAGAAGCTCGTAAGAGCTGAATAAAAGCTCATAAGAGCT
1 AACAGAAGCTCG-AA-AGCTGAACAAAAGCTCATAAGAGCT
74279472 AATCCACCCA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
40 12 0.33
41 2 0.06
42 22 0.61
ACGTcount: A:0.43, C:0.19, G:0.21, T:0.17
Consensus pattern (40 bp):
AACAGAAGCTCGAAAGCTGAACAAAAGCTCATAAGAGCTT
Found at i:74284399 original size:27 final size:27
Alignment explanation
Indices: 74284323--74284400 Score: 102
Period size: 27 Copynumber: 2.9 Consensus size: 27
74284313 AATAATTAAC
* *
74284323 CACTAGTGCCGCCTATCAGATAAGGGT
1 CACTAGTGACGCCTATCAGATAGGGGT
* *
74284350 CACCAGTGGCGCCTATCAGATAGGGGT
1 CACTAGTGACGCCTATCAGATAGGGGT
* *
74284377 CACTGGTGACGCCTATCAAATAGG
1 CACTAGTGACGCCTATCAGATAGG
74284401 CACCACCCTT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.26, C:0.26, G:0.28, T:0.21
Consensus pattern (27 bp):
CACTAGTGACGCCTATCAGATAGGGGT
Found at i:74306146 original size:27 final size:27
Alignment explanation
Indices: 74306089--74306146 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
74306079 TTAGTGGCTC
* *
74306089 TGCCACGTAATTACTGCTCTAGTGGCTT
1 TGCCACGT-ATTACTGCTCTAGTAGCAT
*
74306117 TGCCACGT-TTACTGTTACTAGTAGCAT
1 TGCCACGTATTACTGCT-CTAGTAGCAT
74306144 TGC
1 TGC
74306147 TGCGTTATTG
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
26 7 0.27
27 11 0.42
28 8 0.31
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.36
Consensus pattern (27 bp):
TGCCACGTATTACTGCTCTAGTAGCAT
Found at i:74314081 original size:47 final size:47
Alignment explanation
Indices: 74314022--74314150 Score: 172
Period size: 47 Copynumber: 2.8 Consensus size: 47
74314012 TGCGAGTAAA
** *
74314022 TACCTTGATTTGGCTACGGGCCATGGTATAGGTA-TTTTGTGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCTG-GAGAAGT
* *
74314069 TACCTTGATTTGGCTACGGACCATGGTATAGGTACTCCTGGATAAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCTGGAGAAGT
* *
74314116 TACTTTAATTTGGCTAC-GGCCATGGTATAGGTACT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACT
74314151 TATCGATTGT
Statistics
Matches: 73, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
46 17 0.23
47 53 0.73
48 3 0.04
ACGTcount: A:0.22, C:0.16, G:0.27, T:0.35
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCTGGAGAAGT
Found at i:74316180 original size:14 final size:14
Alignment explanation
Indices: 74316141--74316180 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
74316131 CCAAAATCTT
74316141 TGTATGCAGATGTA
1 TGTATGCAGATGTA
* *
74316155 TGTATACCGATGTA
1 TGTATGCAGATGTA
*
74316169 TGTATGCGGATG
1 TGTATGCAGATG
74316181 ACCCAACTCA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.25, C:0.10, G:0.30, T:0.35
Consensus pattern (14 bp):
TGTATGCAGATGTA
Found at i:74316522 original size:21 final size:21
Alignment explanation
Indices: 74316496--74316543 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
74316486 GTGCGGGTCT
*
74316496 ACACGCTAATATGGAGGCCTC
1 ACACGCTAATATGAAGGCCTC
** *
74316517 ACACGCTCGTGTGAAGGCCTC
1 ACACGCTAATATGAAGGCCTC
74316538 ACACGC
1 ACACGC
74316544 CCGTGTGGAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.25, C:0.33, G:0.25, T:0.17
Consensus pattern (21 bp):
ACACGCTAATATGAAGGCCTC
Found at i:74316548 original size:21 final size:21
Alignment explanation
Indices: 74316510--74316573 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 21
74316500 GCTAATATGG
*
74316510 AGGCCTCACACGCTCGTGTGA
1 AGGCCTCACACGCCCGTGTGA
*
74316531 AGGCCTCACACGCCCGTGTGG
1 AGGCCTCACACGCCCGTGTGA
*** *
74316552 AGGGGGCACATGCCCGTGTGA
1 AGGCCTCACACGCCCGTGTGA
74316573 A
1 A
74316574 CAGCTCGTGT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.19, C:0.31, G:0.34, T:0.16
Consensus pattern (21 bp):
AGGCCTCACACGCCCGTGTGA
Found at i:74322451 original size:21 final size:20
Alignment explanation
Indices: 74322427--74322470 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 20
74322417 TAAATCTTAA
74322427 TTAATAATTCATAATTTA-AAT
1 TTAATAATT-A-AATTTATAAT
74322448 TTAATAATTAAATTTATAAT
1 TTAATAATTAAATTTATAAT
74322468 TTA
1 TTA
74322471 GTATTAAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 6 0.27
20 7 0.32
21 9 0.41
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (20 bp):
TTAATAATTAAATTTATAAT
Found at i:74334203 original size:35 final size:35
Alignment explanation
Indices: 74334137--74334204 Score: 82
Period size: 35 Copynumber: 1.9 Consensus size: 35
74334127 ATATGTAATC
*
74334137 TTATATTGAACTTGAATATTTGATTACATGTGAGT
1 TTATATTGAACTTGAATATTTGATCACATGTGAGT
* ** * *
74334172 TTATATTGAATTTGTGTATTTGGTCATATGTGA
1 TTATATTGAACTTGAATATTTGATCACATGTGA
74334205 AGTAATCTTG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
35 27 1.00
ACGTcount: A:0.28, C:0.04, G:0.19, T:0.49
Consensus pattern (35 bp):
TTATATTGAACTTGAATATTTGATCACATGTGAGT
Found at i:74342683 original size:5 final size:5
Alignment explanation
Indices: 74342675--74342741 Score: 79
Period size: 5 Copynumber: 13.6 Consensus size: 5
74342665 AATAAATTGT
74342675 TATTA TATTA TATTA TTATTA TATTA TATTA TATTA TA-TA T-TATA TATTA
1 TATTA TATTA TATTA -TATTA TATTA TATTA TATTA TATTA TAT-TA TATTA
74342725 TA-TA T-TATA TATTA TAT
1 TATTA TAT-TA TATTA TAT
74342742 AAATAAGTAA
Statistics
Matches: 55, Mismatches: 0, Indels: 14
0.80 0.00 0.20
Matches are distributed among these distances:
4 6 0.11
5 42 0.76
6 7 0.13
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATTA
Found at i:74342699 original size:21 final size:22
Alignment explanation
Indices: 74342675--74342741 Score: 104
Period size: 21 Copynumber: 3.1 Consensus size: 22
74342665 AATAAATTGT
74342675 TATTATATTATATTAT-TATTA
1 TATTATATTATATTATATATTA
74342696 TATTATATTATATTATATATTA
1 TATTATATTATATTATATATTA
74342718 TA-TAT-TATATATTATATATTA
1 TATTATAT-TATATTATATATTA
74342739 TAT
1 TAT
74342742 AAATAAGTAA
Statistics
Matches: 43, Mismatches: 0, Indels: 5
0.90 0.00 0.10
Matches are distributed among these distances:
20 1 0.02
21 35 0.81
22 7 0.16
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (22 bp):
TATTATATTATATTATATATTA
Found at i:74342716 original size:7 final size:7
Alignment explanation
Indices: 74342683--74342742 Score: 88
Period size: 7 Copynumber: 8.6 Consensus size: 7
74342673 GTTATTATAT
74342683 TATATTA
1 TATATTA
74342690 T-TATTA
1 TATATTA
74342696 TAT-TATA
1 TATAT-TA
74342703 TTATATTA
1 -TATATTA
74342711 TATATTA
1 TATATTA
74342718 TATATTA
1 TATATTA
74342725 TATATTA
1 TATATTA
74342732 TATATTA
1 TATATTA
74342739 TATA
1 TATA
74342743 AATAAGTAAA
Statistics
Matches: 49, Mismatches: 0, Indels: 8
0.86 0.00 0.14
Matches are distributed among these distances:
6 7 0.14
7 36 0.73
8 5 0.10
9 1 0.02
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (7 bp):
TATATTA
Found at i:74342821 original size:6 final size:6
Alignment explanation
Indices: 74342810--74342842 Score: 57
Period size: 6 Copynumber: 5.3 Consensus size: 6
74342800 GGAGAGAAAG
74342810 AAAGAA AAAGAA AAAGAA AAAGAA AAAGGAA AA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAA-GAA AA
74342843 TTTAGGGTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 21 0.81
7 5 0.19
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (6 bp):
AAAGAA
Found at i:74344389 original size:22 final size:23
Alignment explanation
Indices: 74344330--74344389 Score: 56
Period size: 22 Copynumber: 2.6 Consensus size: 23
74344320 TTGAATTGAG
74344330 AAAGTGAATTATAATTGATACTGA
1 AAAGTGAATTA-AATTGATACTGA
74344354 ACTAAGAT-AA--AAATT-ATACTGA
1 A--AAG-TGAATTAAATTGATACTGA
74344376 AAAGTGAATTAAAT
1 AAAGTGAATTAAAT
74344390 ACCCTATTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 14
0.68 0.00 0.32
Matches are distributed among these distances:
19 1 0.03
20 5 0.17
22 12 0.40
23 4 0.13
24 2 0.07
26 5 0.17
27 1 0.03
ACGTcount: A:0.52, C:0.05, G:0.13, T:0.30
Consensus pattern (23 bp):
AAAGTGAATTAAATTGATACTGA
Found at i:74344783 original size:18 final size:18
Alignment explanation
Indices: 74344760--74344947 Score: 150
Period size: 18 Copynumber: 10.4 Consensus size: 18
74344750 CTGATTATTT
74344760 CTGAATAATTGACTGTTA
1 CTGAATAATTGACTGTTA
74344778 -TCGAATAATTGACTGTTA
1 CT-GAATAATTGACTGTTA
* *
74344796 CTGGATAATAGACTGTTA
1 CTGAATAATTGACTGTTA
* * *
74344814 CTGAATAACTGAATATTA
1 CTGAATAATTGACTGTTA
* *
74344832 CTGAATAAATGA-TCATTA
1 CTGAATAATTGACT-GTTA
* * *
74344850 CTGAATAACTGATTGTCA
1 CTGAATAATTGACTGTTA
*
74344868 CTGAATAAATGACTGTTA
1 CTGAATAATTGACTGTTA
* * *
74344886 CTGAATAACTTAATTGCTA
1 CTGAATAA-TTGACTGTTA
*
74344905 CTGAAT-ATCTGA-TTTTA
1 CTGAATAAT-TGACTGTTA
* *
74344922 CTAAATAATTGACTATTA
1 CTGAATAATTGACTGTTA
*
74344940 CTGGATAA
1 CTGAATAA
74344948 CCGATCAATT
Statistics
Matches: 137, Mismatches: 25, Indels: 16
0.77 0.14 0.09
Matches are distributed among these distances:
17 14 0.10
18 109 0.80
19 14 0.10
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.36
Consensus pattern (18 bp):
CTGAATAATTGACTGTTA
Found at i:74344882 original size:72 final size:72
Alignment explanation
Indices: 74344745--74344895 Score: 182
Period size: 72 Copynumber: 2.1 Consensus size: 72
74344735 AAAGGTATAA
* * * * * * *
74344745 AATAACTGATTATTTCTGAATAATTGACTGTTATCGAATAATTGACTGTTACTGGATAATAGACT
1 AATAACTGAATATTACTGAATAAATGACTATTATCGAATAACTGACTGTCACTGAATAATAGACT
74344810 GTTACTG
66 GTTACTG
*
74344817 AATAACTGAATATTACTGAATAAATGA-TCATTA-CTGAATAACTGATTGTCACTGAATAA-ATG
1 AATAACTGAATATTACTGAATAAATGACT-ATTATC-GAATAACTGACTGTCACTGAATAATA-G
74344879 ACTGTTACTG
63 ACTGTTACTG
74344889 AATAACT
1 AATAACT
74344896 TAATTGCTAC
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
71 3 0.04
72 65 0.96
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.36
Consensus pattern (72 bp):
AATAACTGAATATTACTGAATAAATGACTATTATCGAATAACTGACTGTCACTGAATAATAGACT
GTTACTG
Found at i:74345036 original size:18 final size:18
Alignment explanation
Indices: 74344745--74345040 Score: 132
Period size: 18 Copynumber: 16.1 Consensus size: 18
74344735 AAAGGTATAA
* * *
74344745 AATAACTGATTATTTCTG
1 AATAAATGATTGTTACTG
* *
74344763 AATAATTGACTGTTA-TCG
1 AATAAATGATTGTTACT-G
* *
74344781 AATAATTGACTGTTACTG
1 AATAAATGATTGTTACTG
* *
74344799 GAT-AATAGACTGTTACTG
1 AATAAAT-GATTGTTACTG
* * *
74344817 AATAACTGAATATTACTG
1 AATAAATGATTGTTACTG
**
74344835 AATAAATGATCATTACTG
1 AATAAATGATTGTTACTG
* *
74344853 AATAACTGATTGTCACTG
1 AATAAATGATTGTTACTG
*
74344871 AATAAATGACTGTTACTG
1 AATAAATGATTGTTACTG
* * *
74344889 AATAACTTAATTGCTACTG
1 AATAA-ATGATTGTTACTG
** *
74344908 AATATCTGATT-TTACTA
1 AATAAATGATTGTTACTG
* * *
74344925 AATAATTGACTATTACTG
1 AATAAATGATTGTTACTG
* *
74344943 GATAACCGATCAATTGATCGATACTG
1 AATAA---AT-GATTG-T---TACTG
* * * *
74344969 AATAACTGGTTATTATTG
1 AATAAATGATTGTTACTG
* *
74344987 AATAATTGATTGTTACCG
1 AATAAATGATTGTTACTG
* *
74345005 AATAACTGACTGTTACTG
1 AATAAATGATTGTTACTG
*
74345023 AATAAATAATTGTT-CTG
1 AATAAATGATTGTTACTG
74345040 A
1 A
74345041 TTGTTAATGA
Statistics
Matches: 209, Mismatches: 55, Indels: 29
0.71 0.19 0.10
Matches are distributed among these distances:
17 19 0.09
18 157 0.75
19 16 0.08
21 2 0.01
22 4 0.02
23 2 0.01
26 9 0.04
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.37
Consensus pattern (18 bp):
AATAAATGATTGTTACTG
Found at i:74345933 original size:20 final size:20
Alignment explanation
Indices: 74345904--74345946 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
74345894 AAAATAAACA
* **
74345904 TATAATTATTCATTTAATAT
1 TATAACTATTCAAATAATAT
74345924 TATAACTATTCAAATAATAT
1 TATAACTATTCAAATAATAT
74345944 TAT
1 TAT
74345947 TTAAATAGTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.49
Consensus pattern (20 bp):
TATAACTATTCAAATAATAT
Found at i:74346368 original size:29 final size:30
Alignment explanation
Indices: 74346336--74346392 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
74346326 TGGTTCAATG
*
74346336 TGCAATTGTATGCATG-AATTTTGATTTTA
1 TGCAATTGTATACATGAAATTTTGATTTTA
* *
74346365 TGCAATTTTATATATGAAATTTTGATTT
1 TGCAATTGTATACATGAAATTTTGATTT
74346393 GATCAAATTC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 13 0.54
30 11 0.46
ACGTcount: A:0.30, C:0.05, G:0.14, T:0.51
Consensus pattern (30 bp):
TGCAATTGTATACATGAAATTTTGATTTTA
Found at i:74349049 original size:9 final size:11
Alignment explanation
Indices: 74349017--74349048 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
74349007 ATATATTCTT
*
74349017 ATAATAAACAC
1 ATAAAAAACAC
74349028 ATAAAAAACAC
1 ATAAAAAACAC
74349039 ATAAAAAACA
1 ATAAAAAACA
74349049 TTCAAAAACT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.72, C:0.16, G:0.00, T:0.12
Consensus pattern (11 bp):
ATAAAAAACAC
Found at i:74353617 original size:26 final size:26
Alignment explanation
Indices: 74353588--74353640 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
74353578 TCAAAATTAA
74353588 TACATTGCCTTAAGCAAATTTCACAT
1 TACATTGCCTTAAGCAAATTTCACAT
*
74353614 TACATTGCCTTGAGCAAATTTCACAT
1 TACATTGCCTTAAGCAAATTTCACAT
74353640 T
1 T
74353641 CTCGTAAGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.23, G:0.09, T:0.36
Consensus pattern (26 bp):
TACATTGCCTTAAGCAAATTTCACAT
Found at i:74360346 original size:22 final size:21
Alignment explanation
Indices: 74360303--74360347 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
74360293 GAATACTAAG
*
74360303 ACCAAAAACCATATGTAGAAA
1 ACCAAAAACCATATGTACAAA
* *
74360324 ACCACAAAACCGTATTTACAAA
1 ACCA-AAAACCATATGTACAAA
74360346 AC
1 AC
74360348 ACATACCATC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.53, C:0.24, G:0.07, T:0.16
Consensus pattern (21 bp):
ACCAAAAACCATATGTACAAA
Found at i:74362602 original size:50 final size:51
Alignment explanation
Indices: 74362525--74362647 Score: 187
Period size: 50 Copynumber: 2.4 Consensus size: 51
74362515 GACCATGGCA
74362525 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATC-AAGGAAAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCTAAGGAAAA-TG
* *
74362576 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCTATGGCAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCTAAGGAAAATG
* *
74362626 ACAAGTGAAAAGTGGTAGCTTC
1 ACAAGTGATAAGTGATAGCTTC
74362648 AACTACCTAA
Statistics
Matches: 66, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
50 41 0.62
51 25 0.38
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.27
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCTAAGGAAAATG
Found at i:74362667 original size:31 final size:31
Alignment explanation
Indices: 74362629--74362808 Score: 245
Period size: 31 Copynumber: 5.8 Consensus size: 31
74362619 GCAAATGACA
* *
74362629 AGTGAAAAGTGGTAGCTTCAACTACCTAATC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
*
74362660 AGTGAAAAGTGGTAGCTTCCGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
* *
74362691 AGTGCAAAGTGGTAG-TTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTT-CAGCTACCTGATC
* *
74362722 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
* *
74362753 AGTGAAAAATGGTAGCTCCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
* *
74362784 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCAGCTAC
74362809 AAGTGACAAG
Statistics
Matches: 134, Mismatches: 13, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
30 2 0.01
31 131 0.98
32 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
Found at i:74362903 original size:47 final size:46
Alignment explanation
Indices: 74362833--74362956 Score: 158
Period size: 47 Copynumber: 2.7 Consensus size: 46
74362823 AAGTGATTTT
* *
74362833 CGTATAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTA
1 CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * * *
74362879 CTGTATAAGACCATATCTCGGATATGGCATCAGTGAGATATGTGATT
1 C-GTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * *
74362926 CGTGTAAGACCATAGCTGGGCTATGGCATCG
1 CGTATAAGACCATATCTGGGATATGGCATCG
74362957 ATATATAAAT
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
46 26 0.39
47 40 0.61
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (46 bp):
CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
Found at i:74362985 original size:42 final size:43
Alignment explanation
Indices: 74362927--74363041 Score: 153
Period size: 42 Copynumber: 2.7 Consensus size: 43
74362917 TATGTGATTC
*
74362927 GTGTAAGACCATAGCTGGGCTATGGCATCGA-TATATAAATAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATAAAGAT
* * *
74362969 GTGTAAGACCATAGCTGGGCTATGACATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATAAAGAT
* **
74363011 GTGTAAGACCATAGTTGAACTATGGCATCGA
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA
74363042 GAAAACGAAG
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
41 1 0.02
42 61 0.97
43 1 0.02
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (43 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATAAAGAT
Found at i:74364148 original size:9 final size:9
Alignment explanation
Indices: 74364136--74364178 Score: 50
Period size: 9 Copynumber: 4.6 Consensus size: 9
74364126 TTTACATATT
74364136 TAATTTTTA
1 TAATTTTTA
*
74364145 TAATATTTA
1 TAATTTTTA
*
74364154 TTACTTTTTTA
1 -TA-ATTTTTA
74364165 TAATTTTTA
1 TAATTTTTA
74364174 TAATT
1 TAATT
74364179 AAAAAAAAGA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
9 19 0.68
10 4 0.14
11 5 0.18
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (9 bp):
TAATTTTTA
Found at i:74364308 original size:18 final size:18
Alignment explanation
Indices: 74364284--74364326 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
74364274 TTATATCTAT
74364284 ATTTTTTTAT-TAATTTA
1 ATTTTTTTATATAATTTA
* *
74364301 ATTTTTTTATATATTTTT
1 ATTTTTTTATATAATTTA
74364319 ATTTTTTT
1 ATTTTTTT
74364327 TAATTTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 10 0.43
18 13 0.57
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (18 bp):
ATTTTTTTATATAATTTA
Found at i:74364319 original size:27 final size:28
Alignment explanation
Indices: 74364281--74364336 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
74364271 ATTTTATATC
*
74364281 TATATTTTTTTA-TTAATTTAATTTTTT
1 TATATATTTTTATTTAATTTAATTTTTT
**
74364308 TATATATTTTTATTTTTTTTAATTTTTT
1 TATATATTTTTATTTAATTTAATTTTTT
74364336 T
1 T
74364337 TTGATGTGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
27 11 0.44
28 14 0.56
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (28 bp):
TATATATTTTTATTTAATTTAATTTTTT
Found at i:74364336 original size:18 final size:19
Alignment explanation
Indices: 74364284--74364328 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
74364274 TTATATCTAT
*
74364284 ATTTTTTTAT-TA-ATTTA
1 ATTTTTTTATATATTTTTA
74364301 ATTTTTTTATATATTTTTA
1 ATTTTTTTATATATTTTTA
*
74364320 TTTTTTTTA
1 ATTTTTTTA
74364329 ATTTTTTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 10 0.42
18 2 0.08
19 12 0.50
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (19 bp):
ATTTTTTTATATATTTTTA
Found at i:74365612 original size:33 final size:33
Alignment explanation
Indices: 74365574--74365663 Score: 103
Period size: 33 Copynumber: 2.8 Consensus size: 33
74365564 AGATTAATTT
74365574 ATATTTTATATATCATTATATTAAATTAATCAA
1 ATATTTTATATATCATTATATTAAATTAATCAA
* * * * *
74365607 ATATTTTATGTATAATTATATTAACTTATTTAA
1 ATATTTTATATATCATTATATTAAATTAATCAA
* *
74365640 ATA--TAATTTATCATTATATTAAAT
1 ATATTTTATATATCATTATATTAAAT
74365664 CATTTAAATT
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
31 17 0.35
33 31 0.65
ACGTcount: A:0.43, C:0.04, G:0.01, T:0.51
Consensus pattern (33 bp):
ATATTTTATATATCATTATATTAAATTAATCAA
Found at i:74365659 original size:31 final size:32
Alignment explanation
Indices: 74365584--74365672 Score: 99
Period size: 31 Copynumber: 2.8 Consensus size: 32
74365574 ATATTTTATA
* * *
74365584 TATCATTATATTAAATTAATCAAATATTTTATG
1 TATCATTATATTAAATTATTTAAATA-TTAATG
* * *
74365617 TATAATTATATTAACTTATTTAAATA-TAATT
1 TATCATTATATTAAATTATTTAAATATTAATG
*
74365648 TATCATTATATTAAATCATTTAAAT
1 TATCATTATATTAAATTATTTAAAT
74365673 TTAGTTCATT
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
31 25 0.53
33 22 0.47
ACGTcount: A:0.44, C:0.06, G:0.01, T:0.49
Consensus pattern (32 bp):
TATCATTATATTAAATTATTTAAATATTAATG
Found at i:74370914 original size:26 final size:26
Alignment explanation
Indices: 74370858--74370908 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
74370848 CTCTATATAT
74370858 GGCTCTTCGTGAGCTTCCTAATTAAA
1 GGCTCTTCGTGAGCTTCCTAATTAAA
* *
74370884 GGCTCTTTGTGAGCTTCCTGATTAA
1 GGCTCTTCGTGAGCTTCCTAATTAA
74370909 TAGCTCCCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GGCTCTTCGTGAGCTTCCTAATTAAA
Found at i:74374212 original size:16 final size:17
Alignment explanation
Indices: 74374187--74374223 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
74374177 TGATAAAATG
*
74374187 AAAAATTAAGT-GTTAA
1 AAAAAATAAGTGGTTAA
74374203 AAAAAATAAGTGGTTAA
1 AAAAAATAAGTGGTTAA
74374220 AAAA
1 AAAA
74374224 CTAGTATTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 10 0.53
17 9 0.47
ACGTcount: A:0.62, C:0.00, G:0.14, T:0.24
Consensus pattern (17 bp):
AAAAAATAAGTGGTTAA
Found at i:74378961 original size:40 final size:40
Alignment explanation
Indices: 74378863--74379165 Score: 396
Period size: 40 Copynumber: 7.6 Consensus size: 40
74378853 TCCTCGTTCA
* * * * *
74378863 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
74378902 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
74378942 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
74378982 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
74379022 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
74379062 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
74379102 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
74379142 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
74379166 CAGCATTCAA
Statistics
Matches: 240, Mismatches: 20, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 37 0.15
40 195 0.81
41 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:74398412 original size:20 final size:20
Alignment explanation
Indices: 74398389--74398427 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
74398379 AAGACTTTAC
* *
74398389 TTTATTTTTATTTTTATTTG
1 TTTACTTTTATCTTTATTTG
74398409 TTTACTTTTATCTTTATTT
1 TTTACTTTTATCTTTATTT
74398428 ATCTTTTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.03, T:0.77
Consensus pattern (20 bp):
TTTACTTTTATCTTTATTTG
Found at i:74403021 original size:81 final size:85
Alignment explanation
Indices: 74402906--74403152 Score: 211
Period size: 86 Copynumber: 2.9 Consensus size: 85
74402896 TTTTCTCAAA
* * * *
74402906 TCACCGGCATTTAGCCTACTAGGTTTTAAACCCGAAT-TCA-TCACCGACACGA-AGCCTGCTAG
1 TCACCGGCATTTAGCCTGCTAGGCTTGAAGCCCGAATATCATTCACCGACACGATAGCCTGCTAG
* * *
74402968 ACTTTAAGTCTGA-ACTCA-T
66 ACTTGAAGCCCGATA-TCATT
* * **
74402987 TCACCGGCATTTCGCCTGCTAGGCTTGAAGCCCG-ATATCATTTCACCGGCATTATAGCCTGCTA
1 TCACCGGCATTTAGCCTGCTAGGCTTGAAGCCCGAATATCA-TTCACCGACACGATAGCCTGCTA
*
74403051 GGCTTGAAGCCCGATATCATT
65 GACTTGAAGCCCGATATCATT
** * ** **
74403072 TCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCG-ATATTATCTCACCGGTATTATAGCCTGCT
1 TCACCGGCATT-TAGCCTGCTAGGCTTGAAGCCCGAATATCAT-TCACCGACACGATAGCCTGCT
* **
74403136 AGGCCCGAAGCCCGATA
64 AGACTTGAAGCCCGATA
74403153 ATATTATTCA
Statistics
Matches: 139, Mismatches: 19, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
80 2 0.01
81 32 0.23
83 9 0.06
84 22 0.16
85 14 0.10
86 60 0.43
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (85 bp):
TCACCGGCATTTAGCCTGCTAGGCTTGAAGCCCGAATATCATTCACCGACACGATAGCCTGCTAG
ACTTGAAGCCCGATATCATT
Found at i:74403054 original size:43 final size:43
Alignment explanation
Indices: 74402986--74403152 Score: 255
Period size: 43 Copynumber: 3.9 Consensus size: 43
74402976 TCTGAACTCA
* **
74402986 TTCACCGGCATT-TCGCCTGCTAGGCTTGAAGCCCGATATCAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
**
74403028 TTCACCGGCATTATAGCCTGCTAGGCTTGAAGCCCGATATCAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
*
74403071 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
* *
74403114 CTCACCGGTATTATAGCCTGCTAGGCCCGAAGCCCGATA
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATA
74403153 ATATTATTCA
Statistics
Matches: 118, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
42 12 0.10
43 106 0.90
ACGTcount: A:0.22, C:0.31, G:0.22, T:0.26
Consensus pattern (43 bp):
TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
Found at i:74403192 original size:86 final size:86
Alignment explanation
Indices: 74403000--74403199 Score: 235
Period size: 86 Copynumber: 2.3 Consensus size: 86
74402990 CCGGCATTTC
** * **
74403000 GCCTGCTAGGCTTGAAGCCCGATATCATTTCACCGGCATTATAGCCTGCTAGGCTTGAAGCCCGA
1 GCCTGCTAGGCCCGAAGCCCGATATCATCTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGA
* *
74403065 TATCATTTCACCGGCATTATA
66 TATCATTTCACCAGCATTAAA
* *
74403086 GCCTGCTAGGCCCGAAGCCCGATATTATCTCACCGGTATTATAGCCTGCTAGGCCCGAAGCCCGA
1 GCCTGCTAGGCCCGAAGCCCGATATCATCTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGA
*
74403151 TAAT-ATTATTCACTAGC-TTAAA
66 T-ATCA-T-TTCACCAGCATTAAA
* *
74403173 GCTTGCTAGG-CCGAGGCCCGAATATCA
1 GCCTGCTAGGCCCGAAGCCCG-ATATCA
74403200 CATTTCGATA
Statistics
Matches: 97, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
86 69 0.71
87 21 0.22
88 7 0.07
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.26
Consensus pattern (86 bp):
GCCTGCTAGGCCCGAAGCCCGATATCATCTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGA
TATCATTTCACCAGCATTAAA
Found at i:74412769 original size:16 final size:17
Alignment explanation
Indices: 74412740--74412773 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
74412730 AGAGCAGGGG
74412740 AAAGAAAGGAAGGAAAA
1 AAAGAAAGGAAGGAAAA
74412757 AAAGAAA-GAAGGAAAA
1 AAAGAAAGGAAGGAAAA
74412773 A
1 A
74412774 GGGGGAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (17 bp):
AAAGAAAGGAAGGAAAA
Found at i:74414449 original size:53 final size:50
Alignment explanation
Indices: 74414387--74414535 Score: 198
Period size: 53 Copynumber: 3.0 Consensus size: 50
74414377 CTATTACCAT
74414387 TACTGTTACTGTTTCAGATTTGTTCCGATGAGGTACTCTGTGTACCGTAATG
1 TACTGTTACTGTTTCAGATTTGTTCCGATGAGGTACTCTGTGTACCGT-A-G
* *
74414439 TGACTGTTACTGTTTCGGATTTGTTTCGATGAGGTACTCTGTGTACC---G
1 T-ACTGTTACTGTTTCAGATTTGTTCCGATGAGGTACTCTGTGTACCGTAG
* *
74414487 TACTGTTACT-ATTCCGAATTTGTTCCGATGAGGTACTCTGTGTACCGTA
1 TACTGTTACTGTTTCAG-ATTTGTTCCGATGAGGTACTCTGTGTACCGTA
74414536 CAGCTACTAT
Statistics
Matches: 87, Mismatches: 5, Indels: 12
0.84 0.05 0.12
Matches are distributed among these distances:
46 4 0.05
47 37 0.43
48 2 0.02
52 1 0.01
53 43 0.49
ACGTcount: A:0.18, C:0.18, G:0.23, T:0.40
Consensus pattern (50 bp):
TACTGTTACTGTTTCAGATTTGTTCCGATGAGGTACTCTGTGTACCGTAG
Found at i:74414510 original size:47 final size:47
Alignment explanation
Indices: 74414387--74414546 Score: 187
Period size: 47 Copynumber: 3.3 Consensus size: 47
74414377 CTATTACCAT
*
74414387 TACTGTTACTGTTTC-AGATTTGTTCCGATGAGGTACTCTGTGTACCGTAATG
1 TACTGTTACTATTTCGA-ATTTGTTCCGATGAGGTACTCTGTGTACC-----G
* * *
74414439 TGACTGTTACTGTTTCGGATTTGTTTCGATGAGGTACTCTGTGTACCG
1 T-ACTGTTACTATTTCGAATTTGTTCCGATGAGGTACTCTGTGTACCG
*
74414487 TACTGTTACTATTCCGAATTTGTTCCGATGAGGTACTCTGTGTACCG
1 TACTGTTACTATTTCGAATTTGTTCCGATGAGGTACTCTGTGTACCG
* *
74414534 TACAGCTACTATT
1 TACTGTTACTATT
74414547 ACTGTTATTG
Statistics
Matches: 98, Mismatches: 8, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
47 53 0.54
48 2 0.02
52 1 0.01
53 42 0.43
ACGTcount: A:0.19, C:0.19, G:0.23, T:0.40
Consensus pattern (47 bp):
TACTGTTACTATTTCGAATTTGTTCCGATGAGGTACTCTGTGTACCG
Found at i:74414696 original size:18 final size:18
Alignment explanation
Indices: 74414675--74414945 Score: 167
Period size: 18 Copynumber: 14.6 Consensus size: 18
74414665 TAACTGATTA
74414675 TTACTGAATAATTGACTG
1 TTACTGAATAATTGACTG
* * *
74414693 TTACCGGATACTTGACTG
1 TTACTGAATAATTGACTG
*
74414711 TTACTGGAT-ATTAGACTG
1 TTACTGAATAATT-GACTG
* * *
74414729 TTACTGAATAACTGAATA
1 TTACTGAATAATTGACTG
*
74414747 TTACTGAATAATTGA-TCA
1 TTACTGAATAATTGACT-G
* *
74414765 TTACTGAATAAGTGATTG
1 TTACTGAATAATTGACTG
*
74414783 TCACTGAATGAA-TGACTG
1 TTACTGAAT-AATTGACTG
* *
74414801 TTACTGAATAACTTAATTG
1 TTACTGAATAA-TTGACTG
*
74414820 TTACTGAAT-ATCTGA-TT
1 TTACTGAATAAT-TGACTG
*
74414837 TTACTGAATAATTAACTG
1 TTACTGAATAATTGACTG
74414855 TTACTGGATAACCGATCAATTGA-TCG
1 TTACT-G---A---AT-AATTGACT-G
* * * *
74414881 ATACTGAATAACTGGCTA
1 TTACTGAATAATTGACTG
* *
74414899 TTATTGAATAATTGATTG
1 TTACTGAATAATTGACTG
* *
74414917 TTACCGAATAACTGACTG
1 TTACTGAATAATTGACTG
74414935 TTACTGAATAA
1 TTACTGAATAA
74414946 ATAATTGTTC
Statistics
Matches: 196, Mismatches: 37, Indels: 40
0.72 0.14 0.15
Matches are distributed among these distances:
17 18 0.09
18 140 0.71
19 22 0.11
22 2 0.01
25 4 0.02
26 10 0.05
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.37
Consensus pattern (18 bp):
TTACTGAATAATTGACTG
Found at i:74414800 original size:72 final size:72
Alignment explanation
Indices: 74414663--74414865 Score: 189
Period size: 72 Copynumber: 2.8 Consensus size: 72
74414653 AAATGTATAA
* * * * ** * * *
74414663 AATAACTGATTATTACTGAATAATTGA-CTGTTACCGGATACTTGACTGTTACTGGATATTAGAC
1 AATAACTGAATATTACTGAATAATTGATC-ATTACTGAATAAGTGACTGTCACTGAATAATAGAC
74414727 TGTTACTG
65 TGTTACTG
*
74414735 AATAACTGAATATTACTGAATAATTGATCATTACTGAATAAGTGATTGTCACTGAATGAAT-GAC
1 AATAACTGAATATTACTGAATAATTGATCATTACTGAATAAGTGACTGTCACTGAAT-AATAGAC
74414799 TGTTACTG
65 TGTTACTG
* * * * * * *
74414807 AATAACTTAATTGTTACTGAAT-ATCTGAT-TTTACTGAATAATTAACTGTTACTGGATAA
1 AATAACTGAA-TATTACTGAATAAT-TGATCATTACTGAATAAGTGACTGTCACTGAATAA
74414866 CCGATCAATT
Statistics
Matches: 109, Mismatches: 18, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
71 2 0.02
72 90 0.83
73 17 0.16
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.37
Consensus pattern (72 bp):
AATAACTGAATATTACTGAATAATTGATCATTACTGAATAAGTGACTGTCACTGAATAATAGACT
GTTACTG
Found at i:74414953 original size:36 final size:36
Alignment explanation
Indices: 74414886--74414954 Score: 93
Period size: 36 Copynumber: 1.9 Consensus size: 36
74414876 GATCGATACT
* * * *
74414886 GAATAACTGGCTATTATTGAATAATTGATTGTTACC
1 GAATAACTGACTATTACTGAATAAATAATTGTTACC
*
74414922 GAATAACTGACTGTTACTGAATAAATAATTGTT
1 GAATAACTGACTATTACTGAATAAATAATTGTT
74414955 CTGATTGTTA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 28 1.00
ACGTcount: A:0.36, C:0.10, G:0.16, T:0.38
Consensus pattern (36 bp):
GAATAACTGACTATTACTGAATAAATAATTGTTACC
Done.