Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 231 of 255
Found at i:76348076 original size:177 final size:176
Alignment explanation
Indices: 76347891--76348584 Score: 1095
Period size: 177 Copynumber: 3.9 Consensus size: 176
76347881 AAATTATAGA
* * *
76347891 TCTTATCTCCATGTATAGGCTATGGAGCAGATGTTAGCCACCGGCCTTATCTCTCTGAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCGACCTTATCTCTCTGAGGTAGCA
* *
76347956 AGAGAGCAGGTTGAAGATATGAGCCTTAACCCACTAAGTAGTAGGGTAACAGGCTGAAAATTACA
66 AGAGAGCAGGTTGAAGATACGAGCCTTAACCC-CTAAGCAGTAGGGTAACAGGCTGAAAATTACA
* * * * *
76348021 AAGCTTATCTTCATGTATCGGTTATGGAACAGATC-AGAAATGACGAG
130 GAGCTTATCTCCATGTATCGGCTATGGAGCAGATCGA-AAATGGCGAG
*
76348068 TCTTATCTCCATGTATCGGCTAGGGAGCAGATTTTAGCCACCGACCTTATCTCTCTGAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCGACCTTATCTCTCTGAGGTAGCA
76348133 AGAGAGCAGGTTGAAGATACGAGCCTTAACCCTCTAAGCAGTAGGGTAACAGGCTGAAAATTACA
66 AGAGAGCAGGTTGAAGATACGAGCCTTAACCC-CTAAGCAGTAGGGTAACAGGCTGAAAATTACA
* *
76348198 GATCTTATCTCCATGTATCGGCTATAGAGCAGATCGAAAATGGCGAG
130 GAGCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATGGCGAG
* * * *
76348245 TCTTATCTCCATGTATCGGCTGTGGAGCAGATTTTAGCCACTGGCCTTATCTCTCTGATGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCGACCTTATCTCTCTGAGGTAGCA
76348310 AGAGAGCAGGTTGAAGATACGAGCCTTAACCCCCTAAGCCA-TAGGGTAACAGGCTGAAAATTAC
66 AGAGAGCAGGTTGAAGATACGAGCCTTAA-CCCCTAAG-CAGTAGGGTAACAGGCTGAAAATTAC
*
76348374 AGATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATGGCGAG
129 AGAGCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATGGCGAG
* * *
76348422 TCTTATCTCCATGTATCGGCTATGGAGTAGATTTTAGCCACCGACCTTATATTTCTGAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCGACCTTATCTCTCTGAGGTAGCA
* * *
76348487 AGAGAGCAGGTTGAAGATACAAGCCTTAACCCTTAAACAGTAGGGTAACAGGCTGAAAATTACAG
66 AGAGAGCAGGTTGAAGATACGAGCCTTAACCCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAG
* *
76348552 AGCTTATCTCCATGTATCAGCTATGGAGTAGAT
131 AGCTTATCTCCATGTATCGGCTATGGAGCAGAT
76348585 TTTAGCCACC
Statistics
Matches: 480, Mismatches: 33, Indels: 9
0.92 0.06 0.02
Matches are distributed among these distances:
175 2 0.00
176 61 0.13
177 411 0.86
178 6 0.01
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (176 bp):
TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCGACCTTATCTCTCTGAGGTAGCA
AGAGAGCAGGTTGAAGATACGAGCCTTAACCCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAG
AGCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATGGCGAG
Found at i:76348143 original size:309 final size:309
Alignment explanation
Indices: 76347584--76348231 Score: 1100
Period size: 309 Copynumber: 2.1 Consensus size: 309
76347574 ATGGCGAGTT
* * * *
76347584 TTATCTCCATGTATCGACTATGGAGCAGATTTTAGCCACCGACCTTATCTCTTTGGGGTAGCAAG
1 TTATCTCCATGTATCGGCTATGGAGCAGATGTTAGCCACCGACCTTATCTCTCTGAGGTAGCAAG
* * *
76347649 AGAGCAGGTTGAAGATACGAGTCTTAACCCTCTAAGTAGTAGGGTAACAGGCTGGAAATTACAAA
66 AGAGCAGGTTGAAGATACGAGCCTTAACCCACTAAGTAGTAGGGTAACAGGCTGAAAATTACAAA
* * *
76347714 TCTTATCTCCATGTATCGGCTATGGAGCAGATTAGAAATGACAAGTCTTATCTCCATGTATCGGC
131 GCTTATCTCCATGTATCGGCTATGGAACAGATCAGAAATGACAAGTCTTATCTCCATGTATCGGC
*
76347779 TATGGAGCAGATTTTAGCCACCGACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATAC
196 TAGGGAGCAGATTTTAGCCACCGACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATAC
*
76347844 GAGCCTTAACCC-CTTAACCAGTAGGGTAACAGGCTGAAAATTATAGATC
261 GAGCCTTAACCCTC-TAACCAGTAGGGTAACAGGCTGAAAATTACAGATC
* *
76347893 TTATCTCCATGTATAGGCTATGGAGCAGATGTTAGCCACCGGCCTTATCTCTCTGAGGTAGCAAG
1 TTATCTCCATGTATCGGCTATGGAGCAGATGTTAGCCACCGACCTTATCTCTCTGAGGTAGCAAG
*
76347958 AGAGCAGGTTGAAGATATGAGCCTTAACCCACTAAGTAGTAGGGTAACAGGCTGAAAATTACAAA
66 AGAGCAGGTTGAAGATACGAGCCTTAACCCACTAAGTAGTAGGGTAACAGGCTGAAAATTACAAA
* * *
76348023 GCTTATCTTCATGTATCGGTTATGGAACAGATCAGAAATGACGAGTCTTATCTCCATGTATCGGC
131 GCTTATCTCCATGTATCGGCTATGGAACAGATCAGAAATGACAAGTCTTATCTCCATGTATCGGC
76348088 TAGGGAGCAGATTTTAGCCACCGACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATAC
196 TAGGGAGCAGATTTTAGCCACCGACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATAC
*
76348153 GAGCCTTAACCCTCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATC
261 GAGCCTTAACCCTCTAACCAGTAGGGTAACAGGCTGAAAATTACAGATC
*
76348202 TTATCTCCATGTATCGGCTATAGAGCAGAT
1 TTATCTCCATGTATCGGCTATGGAGCAGAT
76348232 CGAAAATGGC
Statistics
Matches: 317, Mismatches: 21, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
309 316 1.00
310 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.26
Consensus pattern (309 bp):
TTATCTCCATGTATCGGCTATGGAGCAGATGTTAGCCACCGACCTTATCTCTCTGAGGTAGCAAG
AGAGCAGGTTGAAGATACGAGCCTTAACCCACTAAGTAGTAGGGTAACAGGCTGAAAATTACAAA
GCTTATCTCCATGTATCGGCTATGGAACAGATCAGAAATGACAAGTCTTATCTCCATGTATCGGC
TAGGGAGCAGATTTTAGCCACCGACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATAC
GAGCCTTAACCCTCTAACCAGTAGGGTAACAGGCTGAAAATTACAGATC
Found at i:76348401 original size:486 final size:486
Alignment explanation
Indices: 76347490--76348408 Score: 1527
Period size: 486 Copynumber: 1.9 Consensus size: 486
76347480 GTGAAGTCAC
* * * * *
76347490 GAGCCTTAACCCTCTAAGTAGTAAGGTAATAGGCTGCAAATTACAGATCTTATCTCCATGTATCA
1 GAGCCTTAACCCACTAAGTAGTAAGGTAACAGGCTGAAAATTACAAAGCTTATCTCCATGTATCA
* * *
76347555 GCTATGGAAAAGATCAGAAATGGCGAGTTTTATCTCCATGTATCGACTATGGAGCAGATTTTAGC
66 GCTATGGAAAAGATCAGAAATGACGAGTCTTATCTCCATGTATCGACTAGGGAGCAGATTTTAGC
* * *
76347620 CACCGACCTTATCTCTTTGGGGTAGCAAGAGAGCAGGTTGAAGATACGAGTCTTAACCCTCTAAG
131 CACCGACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACGAGCCTTAACCCTCTAAG
* * * *
76347685 TAGTAGGGTAACAGGCTGGAAATTACAAATCTTATCTCCATGTATCGGCTATGGAGCAGATTAGA
196 CAGTAGGGTAACAGGCTGAAAATTACAAATCTTATCTCCATGTATCGGCTATAGAGCAGATGAGA
76347750 AATGACAAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCGACCTTATCTCTCT
261 AATGACAAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCGACCTTATCTCTCT
*
76347815 GAGGTAGCAAGAGAGCAGGTTGAAGATACGAGCCTTAACCCCTTAACCAGTAGGGTAACAGGCTG
326 GAGGTAGCAAGAGAGCAGGTTGAAGATACGAGCCTTAACCCCCTAACCAGTAGGGTAACAGGCTG
*
76347880 AAAATTATAGATCTTATCTCCATGTATAGGCTATGGAGCAGATGTTAGCCACCGGCCTTATCTCT
391 AAAATTACAGATCTTATCTCCATGTATAGGCTATGGAGCAGATGTTAGCCACCGGCCTTATCTCT
76347945 CTGAGGTAGCAAGAGAGCAGGTTGAAGATAT
456 CTGAGGTAGCAAGAGAGCAGGTTGAAGATAT
* * *
76347976 GAGCCTTAACCCACTAAGTAGTAGGGTAACAGGCTGAAAATTACAAAGCTTATCTTCATGTATCG
1 GAGCCTTAACCCACTAAGTAGTAAGGTAACAGGCTGAAAATTACAAAGCTTATCTCCATGTATCA
* * *
76348041 GTTATGGAACAGATCAGAAATGACGAGTCTTATCTCCATGTATCGGCTAGGGAGCAGATTTTAGC
66 GCTATGGAAAAGATCAGAAATGACGAGTCTTATCTCCATGTATCGACTAGGGAGCAGATTTTAGC
76348106 CACCGACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACGAGCCTTAACCCTCTAAG
131 CACCGACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACGAGCCTTAACCCTCTAAG
*
76348171 CAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCATGTATCGGCTATAGAGCAGATCGA-
196 CAGTAGGGTAACAGGCTGAAAATTACAAATCTTATCTCCATGTATCGGCTATAGAGCAGAT-GAG
* * * * *
76348235 AAATGGCGAGTCTTATCTCCATGTATCGGCTGTGGAGCAGATTTTAGCCACTGGCCTTATCTCTC
260 AAATGACAAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCGACCTTATCTCTC
*
76348300 TGATGTAGCAAGAGAGCAGGTTGAAGATACGAGCCTTAACCCCCTAAGCCA-TAGGGTAACAGGC
325 TGAGGTAGCAAGAGAGCAGGTTGAAGATACGAGCCTTAACCCCCTAA-CCAGTAGGGTAACAGGC
*
76348364 TGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGAT
389 TGAAAATTACAGATCTTATCTCCATGTATAGGCTATGGAGCAGAT
76348409 CGAAAATGGC
Statistics
Matches: 400, Mismatches: 31, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
486 396 0.99
487 4 0.01
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.26
Consensus pattern (486 bp):
GAGCCTTAACCCACTAAGTAGTAAGGTAACAGGCTGAAAATTACAAAGCTTATCTCCATGTATCA
GCTATGGAAAAGATCAGAAATGACGAGTCTTATCTCCATGTATCGACTAGGGAGCAGATTTTAGC
CACCGACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACGAGCCTTAACCCTCTAAG
CAGTAGGGTAACAGGCTGAAAATTACAAATCTTATCTCCATGTATCGGCTATAGAGCAGATGAGA
AATGACAAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCGACCTTATCTCTCT
GAGGTAGCAAGAGAGCAGGTTGAAGATACGAGCCTTAACCCCCTAACCAGTAGGGTAACAGGCTG
AAAATTACAGATCTTATCTCCATGTATAGGCTATGGAGCAGATGTTAGCCACCGGCCTTATCTCT
CTGAGGTAGCAAGAGAGCAGGTTGAAGATAT
Found at i:76348645 original size:131 final size:132
Alignment explanation
Indices: 76348423--76348691 Score: 414
Period size: 131 Copynumber: 2.0 Consensus size: 132
76348413 AATGGCGAGT
* *
76348423 CTTATCTCCATGTATCGGCTATGGAGTAGATTTTAGCCACCGACCTTATATTTCTGAGGTAGCAA
1 CTTATCTCCATGTATCAGCTATGGAGTAGATTTTAGCCACCGACCTTATATCTCTGAGGTAGCAA
* * * *
76348488 GAGAGCAGGTTGAAGATACAAGCCTTAA-CCCTTAAACAGTAGGGTAACAGGCTGAAAATTACAG
66 GAGAGCAGGTTGAAGATACAACCCTTAACCCCCTAAACAGTAGGGTAACAAGCTGAAAAGTACAG
76348552 AG
131 AG
* *
76348554 CTTATCTCCATGTATCAGCTATGGAGTAGATTTTAGCCACCGGCCTTATCTCTCTGAGGTAGCAA
1 CTTATCTCCATGTATCAGCTATGGAGTAGATTTTAGCCACCGACCTTATATCTCTGAGGTAGCAA
* * * *
76348619 GAGAGCAGGTTGAAGATACGACCCTTAACCCCCTAAGCAGTAGGGTAACAAGTTGGAAAGTACAG
66 GAGAGCAGGTTGAAGATACAACCCTTAACCCCCTAAACAGTAGGGTAACAAGCTGAAAAGTACAG
*
76348684 AT
131 AG
76348686 CTTATC
1 CTTATC
76348692 CCTAAATAGT
Statistics
Matches: 124, Mismatches: 13, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
131 87 0.70
132 37 0.30
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (132 bp):
CTTATCTCCATGTATCAGCTATGGAGTAGATTTTAGCCACCGACCTTATATCTCTGAGGTAGCAA
GAGAGCAGGTTGAAGATACAACCCTTAACCCCCTAAACAGTAGGGTAACAAGCTGAAAAGTACAG
AG
Found at i:76354581 original size:15 final size:15
Alignment explanation
Indices: 76354561--76354591 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
76354551 GAGCAAGGAT
76354561 AGAAAAGGAAAAGAA
1 AGAAAAGGAAAAGAA
76354576 AGAAAAGGAAAAGAA
1 AGAAAAGGAAAAGAA
76354591 A
1 A
76354592 AGTCAAAGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (15 bp):
AGAAAAGGAAAAGAA
Found at i:76362763 original size:22 final size:22
Alignment explanation
Indices: 76362727--76362788 Score: 58
Period size: 22 Copynumber: 2.9 Consensus size: 22
76362717 TAAAATAATG
76362727 AAAATAATTTA-AAAATAATTTT
1 AAAAT-ATTTATAAAATAATTTT
*
76362749 TAAATATTTATAAAA-ACATTTT
1 AAAATATTTATAAAATA-ATTTT
* *
76362771 AAAAT-TTTGTCAAATAAT
1 AAAATATTTATAAAATAAT
76362789 AAATCTGAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
21 15 0.45
22 18 0.55
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.42
Consensus pattern (22 bp):
AAAATATTTATAAAATAATTTT
Found at i:76362814 original size:13 final size:13
Alignment explanation
Indices: 76362796--76362828 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
76362786 AATAAATCTG
76362796 AAAATTAATATAA
1 AAAATTAATATAA
76362809 AAAATT-ATATAA
1 AAAATTAATATAA
*
76362821 ACAATTAA
1 AAAATTAA
76362829 AAAATTCGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (13 bp):
AAAATTAATATAA
Found at i:76367913 original size:29 final size:30
Alignment explanation
Indices: 76367881--76367938 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 30
76367871 TTAAAAAGAT
76367881 AGTTTAGGAAATGTATTTAAAAAA-AAAAC
1 AGTTTAGGAAATGTATTTAAAAAATAAAAC
76367910 AGTTTAGGAAATGTATTTAAAAAATAAAA
1 AGTTTAGGAAATGTATTTAAAAAATAAAA
76367939 AACCGCCTGA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 24 0.86
30 4 0.14
ACGTcount: A:0.55, C:0.02, G:0.14, T:0.29
Consensus pattern (30 bp):
AGTTTAGGAAATGTATTTAAAAAATAAAAC
Found at i:76371040 original size:162 final size:162
Alignment explanation
Indices: 76370754--76371069 Score: 519
Period size: 162 Copynumber: 2.0 Consensus size: 162
76370744 AACCTTGGAC
76370754 CTTTCTCCTTAATCACCAAAGCTATACTCATCGGCTCTTGACACCAAAATGCGAACAATCATCAA
1 CTTTCTCCTTAATCACCAAAGCTATACTCATCGGCTCTTGACACCAAAATGCGAACAATCATCAA
* * *
76370819 CCACCATTACTAGGGGAGAGTAATTGGTTTTTAGTTGGATTGGTCAATTTTCATGACTTATCC-A
66 CCACCATTACTAGGGGAGAATAATTGGTTGTTAGTTAGATTGGTCAATTTTCATGACTTATCCGA
*
76370883 CCTTAACCAACCACTGCCAAATTTATATAGGAA
131 -CTTAACCAACCACCGCCAAATTTATATAGGAA
*
76370916 CTTTCTCCTTAATCACCAAAGCTATACTCATCGGCTCTTGACACCACAATGCGAACAATCATCAA
1 CTTTCTCCTTAATCACCAAAGCTATACTCATCGGCTCTTGACACCAAAATGCGAACAATCATCAA
* * *
76370981 CCACCATTAAC-AGGGGAGAATAATTGGTTGTTAGTTAGTTTGGTCGATTTTCCTGACTTATCCG
66 CCACCATT-ACTAGGGGAGAATAATTGGTTGTTAGTTAGATTGGTCAATTTTCATGACTTATCCG
*
76371045 ACTTAACCGACCACCGCCAAATTTA
130 ACTTAACCAACCACCGCCAAATTTA
76371070 ACCAACTAAC
Statistics
Matches: 143, Mismatches: 9, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
162 140 0.98
163 3 0.02
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (162 bp):
CTTTCTCCTTAATCACCAAAGCTATACTCATCGGCTCTTGACACCAAAATGCGAACAATCATCAA
CCACCATTACTAGGGGAGAATAATTGGTTGTTAGTTAGATTGGTCAATTTTCATGACTTATCCGA
CTTAACCAACCACCGCCAAATTTATATAGGAA
Found at i:76371368 original size:24 final size:24
Alignment explanation
Indices: 76371322--76371369 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
76371312 AATATATATC
**
76371322 ATAATTGGATTGGGTTTGGTTAAA
1 ATAATTGGATTGGGTTAAGTTAAA
* *
76371346 ATAATTGGGTTGGGTTAATTTAAA
1 ATAATTGGATTGGGTTAAGTTAAA
76371370 CTATATATAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.27, T:0.42
Consensus pattern (24 bp):
ATAATTGGATTGGGTTAAGTTAAA
Found at i:76371390 original size:11 final size:11
Alignment explanation
Indices: 76371371--76371416 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
76371361 TAATTTAAAC
*
76371371 TATATATATAT
1 TATAAATATAT
76371382 TATAAATATAT
1 TATAAATATAT
76371393 T-TAAAATATAT
1 TAT-AAATATAT
76371404 TA-AAATCATAT
1 TATAAAT-ATAT
76371415 TA
1 TA
76371417 ACCAAACCCT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
10 5 0.16
11 26 0.84
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (11 bp):
TATAAATATAT
Found at i:76371417 original size:11 final size:10
Alignment explanation
Indices: 76371376--76371417 Score: 57
Period size: 11 Copynumber: 3.9 Consensus size: 10
76371366 TAAACTATAT
76371376 ATATATTATAA
1 ATATATTA-AA
76371387 ATATATTTAAA
1 ATATA-TTAAA
76371398 ATATATTAAA
1 ATATATTAAA
76371408 ATCATATTAA
1 AT-ATATTAA
76371418 CCAAACCCTA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
10 7 0.24
11 19 0.66
12 3 0.10
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (10 bp):
ATATATTAAA
Found at i:76371851 original size:4 final size:4
Alignment explanation
Indices: 76371842--76371868 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
76371832 CTTAACTCTC
76371842 TTAT TTAT TTAT TTAT TTAT TTAT TTA
1 TTAT TTAT TTAT TTAT TTAT TTAT TTA
76371869 AAATTAATCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
TTAT
Found at i:76373306 original size:18 final size:18
Alignment explanation
Indices: 76373283--76373323 Score: 66
Period size: 17 Copynumber: 2.3 Consensus size: 18
76373273 AAGAAAATCC
*
76373283 AAAATTTATATTTTTAAA
1 AAAATTTATAATTTTAAA
76373301 AAAA-TTATAATTTTAAA
1 AAAATTTATAATTTTAAA
76373318 AAAATT
1 AAAATT
76373324 CTAAAGAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 16 0.76
18 5 0.24
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
AAAATTTATAATTTTAAA
Found at i:76377578 original size:43 final size:42
Alignment explanation
Indices: 76377417--76377576 Score: 137
Period size: 43 Copynumber: 3.7 Consensus size: 42
76377407 ATATGTGTTA
* * * * *
76377417 TCATGTAAGACCTCATCTGGGACGTTGGCATCGACT-TATAAT
1 TCATGTAAGACCACGTCTGGGACATTGGCATCGA-TATTTGAT
* * *
76377459 TTATGTATAAGACCATGTCTGGGACATCGGCATCG-TATTTGATT
1 TCATG--TAAGACCACGTCTGGGACATTGGCATCGATATTTGA-T
* * *
76377503 TCATGTAAGACC-CTGTCTGGGACAATGACATTGATATTTGAT
1 TCATGTAAGACCAC-GTCTGGGACATTGGCATCGATATTTGAT
*
76377545 TACATGTAAGACCACGTCTGGGACGTTGGCAT
1 T-CATGTAAGACCACGTCTGGGACATTGGCAT
76377577 TGTATGAGCT
Statistics
Matches: 93, Mismatches: 17, Indels: 15
0.74 0.14 0.12
Matches are distributed among these distances:
42 29 0.31
43 35 0.38
44 29 0.31
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (42 bp):
TCATGTAAGACCACGTCTGGGACATTGGCATCGATATTTGAT
Found at i:76378403 original size:32 final size:32
Alignment explanation
Indices: 76378359--76378422 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
76378349 TATGAAGGAA
76378359 ATAGGTTAATGAATATATGATATAAATGATGT
1 ATAGGTTAATGAATATATGATATAAATGATGT
* **
76378391 ATAGGTTGATGAATATATGATATGGATGATGT
1 ATAGGTTAATGAATATATGATATAAATGATGT
76378423 GTGTTTTAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.39, C:0.00, G:0.23, T:0.38
Consensus pattern (32 bp):
ATAGGTTAATGAATATATGATATAAATGATGT
Found at i:76381505 original size:89 final size:87
Alignment explanation
Indices: 76381412--76381628 Score: 217
Period size: 89 Copynumber: 2.4 Consensus size: 87
76381402 AATCATCAAT
* * * *
76381412 CTTTTTTTAAAAAAGCAAATTAAG-TTTCTGTTTTTTTTACACTCAATTCGATACTTGAACTTTC
1 CTTTTTTCAAAAAAGC-AATTAAGCCTACT-TTTTTTTTACACTCAATTCGATACTTGAACTGTC
*
76381476 AAAATGTA-AAAAAATGGCCCTTAAA
64 AAAATGTATAAAAAA--GACCTTAAA
* * * *
76381501 C-TTTTTCAAGAAAAACAATTAAGCCCCTACTTTTTTTTTGCACTCAATTGGGTACTTGAACTGT
1 CTTTTTTCAA-AAAAGCAATTAAG--CCTACTTTTTTTTTACACTCAATTCGATACTTGAACTGT
*
76381565 CAAAATGTATAAAAAAGACCTTCAA
63 CAAAATGTATAAAAAAGACCTTAAA
*
76381590 -TTTTTTCAAAACAAGCAATTAAGCCCTTGCTTTTTTTTT
1 CTTTTTTCAAAA-AAGCAATTAAG-CC-TACTTTTTTTTT
76381629 TGCATTCAAT
Statistics
Matches: 108, Mismatches: 12, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
88 19 0.18
89 42 0.39
90 38 0.35
91 9 0.08
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.39
Consensus pattern (87 bp):
CTTTTTTCAAAAAAGCAATTAAGCCTACTTTTTTTTTACACTCAATTCGATACTTGAACTGTCAA
AATGTATAAAAAAGACCTTAAA
Found at i:76381546 original size:90 final size:89
Alignment explanation
Indices: 76381442--76381643 Score: 248
Period size: 90 Copynumber: 2.2 Consensus size: 89
76381432 TAAGTTTCTG
* * *
76381442 TTTTTTTTACACTCAATTCGATACTTGAACTTTCAAAATGTA-AAAAAATGGCCCTTAAACTTTT
1 TTTTTTTTGCACTCAATT-GATACTTGAACTGTCAAAATGTATAAAAAA--GACCTTAAACTTTT
76381506 TCAAGAA-AAACAATTAAGCCCCTAC-T
63 TCAA-AACAAACAATTAAGCCCCTACTT
* * *
76381532 TTTTTTTTGCACTCAATTGGGTACTTGAACTGTCAAAATGTATAAAAAAGACCTTCAATTTTTTC
1 TTTTTTTTGCACTCAATT-GATACTTGAACTGTCAAAATGTATAAAAAAGACCTTAAACTTTTTC
* * *
76381597 AAAACAAGCAATTAAGCCCTTGCTT
65 AAAACAAACAATTAAGCCCCTACTT
*
76381622 TTTTTTTTGCATTCAATTGATA
1 TTTTTTTTGCACTCAATTGATA
76381644 AAATGCATCA
Statistics
Matches: 97, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
88 2 0.02
89 33 0.34
90 56 0.58
91 6 0.06
ACGTcount: A:0.34, C:0.18, G:0.10, T:0.38
Consensus pattern (89 bp):
TTTTTTTTGCACTCAATTGATACTTGAACTGTCAAAATGTATAAAAAAGACCTTAAACTTTTTCA
AAACAAACAATTAAGCCCCTACTT
Found at i:76381801 original size:8 final size:9
Alignment explanation
Indices: 76381763--76381898 Score: 80
Period size: 10 Copynumber: 14.4 Consensus size: 9
76381753 ACAGTGACAA
76381763 AAAAATTAT
1 AAAAATTAT
76381772 AAAAA--AT
1 AAAAATTAT
*
76381779 AAAAATCAAT
1 AAAAAT-TAT
76381789 AAAAATTAT
1 AAAAATTAT
76381798 AAAAATTATT
1 AAAAATTA-T
**
76381808 AAACTTTAAT
1 AAAAATT-AT
*
76381818 AAAAATATTT
1 AAAAAT-TAT
*
76381828 AAAATTTAAT
1 AAAAATT-AT
*
76381838 AAAAATTAGA
1 AAAAATTA-T
*
76381848 AAAAAATAT
1 AAAAATTAT
*
76381857 AAAAATTGT
1 AAAAATTAT
*
76381866 -AAAATTTT
1 AAAAATTAT
*
76381874 ATAAAATCATAA
1 A-AAAAT--TAT
76381886 AAAAATTAT
1 AAAAATTAT
76381895 AAAA
1 AAAA
76381899 TGTATCAAAA
Statistics
Matches: 97, Mismatches: 18, Indels: 24
0.70 0.13 0.17
Matches are distributed among these distances:
7 7 0.07
8 7 0.07
9 30 0.31
10 44 0.45
11 7 0.07
12 2 0.02
ACGTcount: A:0.65, C:0.02, G:0.01, T:0.31
Consensus pattern (9 bp):
AAAAATTAT
Found at i:76381851 original size:20 final size:20
Alignment explanation
Indices: 76381776--76381879 Score: 81
Period size: 19 Copynumber: 5.3 Consensus size: 20
76381766 AATTATAAAA
* * *
76381776 AATAAAAATCAATAAAAATT
1 AATAAAAATTAGTAAAATTT
* *
76381796 -ATAAAAATTATTAAACTTT
1 AATAAAAATTAGTAAAATTT
*
76381815 AATAAAAA-TATTTAAAATTT
1 AATAAAAATTA-GTAAAATTT
* **
76381835 AATAAAAATTAGAAAAAAAT
1 AATAAAAATTAGTAAAATTT
76381855 -ATAAAAATT-GTAAAATTT
1 AATAAAAATTAGTAAAATTT
*
76381873 TATAAAA
1 AATAAAA
76381880 TCATAAAAAA
Statistics
Matches: 68, Mismatches: 12, Indels: 9
0.76 0.13 0.10
Matches are distributed among these distances:
18 6 0.09
19 32 0.47
20 28 0.41
21 2 0.03
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (20 bp):
AATAAAAATTAGTAAAATTT
Found at i:76382257 original size:38 final size:39
Alignment explanation
Indices: 76382196--76382277 Score: 105
Period size: 38 Copynumber: 2.1 Consensus size: 39
76382186 TTTCTATATA
* * *
76382196 TTTTATAATTTTTTTACGTTTTTTATAAAAATTTAC-AAT
1 TTTTATAATTTTTTAAAGATTTTTAT-AAAATTTACTAAT
*
76382235 TTTTATAA-TTTTTAAAGATTTTTATAAAATTTTCTAAT
1 TTTTATAATTTTTTAAAGATTTTTATAAAATTTACTAAT
76382273 TTTTA
1 TTTTA
76382278 ATAAAAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
37 8 0.21
38 22 0.58
39 8 0.21
ACGTcount: A:0.34, C:0.04, G:0.02, T:0.60
Consensus pattern (39 bp):
TTTTATAATTTTTTAAAGATTTTTATAAAATTTACTAAT
Found at i:76382274 original size:19 final size:18
Alignment explanation
Indices: 76382215--76382283 Score: 59
Period size: 19 Copynumber: 3.6 Consensus size: 18
76382205 TTTTTTACGT
*
76382215 TTTTTATAAAAATTTACAA
1 TTTTTAT-AAAATTTTCAA
* *
76382234 TTTTTAT-AATTTTTAAAGA
1 TTTTTATAAAATTTT-CA-A
76382253 TTTTTATAAAATTTTCTAA
1 TTTTTATAAAATTTTC-AA
76382272 TTTTTAATAAAA
1 TTTTT-ATAAAA
76382284 ATTAAATATT
Statistics
Matches: 40, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
17 5 0.12
18 1 0.03
19 21 0.52
20 13 0.32
ACGTcount: A:0.42, C:0.03, G:0.01, T:0.54
Consensus pattern (18 bp):
TTTTTATAAAATTTTCAA
Found at i:76385665 original size:16 final size:18
Alignment explanation
Indices: 76385627--76385662 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
76385617 TTTTATGTCT
*
76385627 TAAAAATTACATAATATA
1 TAAAAATAACATAATATA
76385645 TAAAAATAACATAATATA
1 TAAAAATAACATAATATA
76385663 AAATGTTACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAAATAACATAATATA
Found at i:76386717 original size:31 final size:31
Alignment explanation
Indices: 76386682--76386742 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
76386672 TATTTAAATG
*
76386682 TATACAATTGAATCTA-AATTAAAATTTTATA
1 TATACAATTGAA-CCACAATTAAAATTTTATA
*
76386713 TATACATTTGAACCACAATTAAAATTTTAT
1 TATACAATTGAACCACAATTAAAATTTTAT
76386743 TTGTATAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 2 0.07
31 25 0.93
ACGTcount: A:0.46, C:0.10, G:0.03, T:0.41
Consensus pattern (31 bp):
TATACAATTGAACCACAATTAAAATTTTATA
Found at i:76387882 original size:152 final size:152
Alignment explanation
Indices: 76387546--76388491 Score: 1249
Period size: 152 Copynumber: 6.3 Consensus size: 152
76387536 TGGCCGCACC
* * * * ** *
76387546 CGTGACAGGCGGGATTTCTCACCACCATACTACAACGACTTCGATATGGTAATTCCGAAATTAAA
1 CGTGACAGGCGGGAATACTCACCACTATACTACAACGACTTCGATGTCATAATTCCGAAATTATA
* * *
76387611 TTATTAGTT-TAAAACTACTTTAGAAGGTCAGAAAATATAAAATCAGATGATTAGATCGCCGTTG
66 TTATTTGTTAT-AAATTACTTTAGAAGGTCAGAAAATAT-AAATCAGAGGA-TAGATCGCCGTTG
*
76387675 CCGGGGATCGAACCCGGGTCACCCG
128 CCGGGGATCGAACCCGGGTCACCAG
76387700 CGTGACAGGCGGGAATACTCACCACTATACTACAACGACTTCGATGTCATAATTCCGAAATTATA
1 CGTGACAGGCGGGAATACTCACCACTATACTACAACGACTTCGATGTCATAATTCCGAAATTATA
* **
76387765 TTATTTGTTATAAATTACTTTAGAAGGTCAGAAAAAATAAATCAGAAAATAGATCGCCGTTGCCG
66 TTATTTGTTATAAATTACTTTAGAAGGTCAGAAAATATAAATCAGAGGATAGATCGCCGTTGCCG
* **
76387830 CGGATCGAACCCGGGTCATAAG
131 GGGATCGAACCCGGGTCACCAG
* * * *
76387852 CGTGACAGGCGGGAATACTCATCACTATACTACAACGACTTCGGTGTCTTAATTCCAAAATTATA
1 CGTGACAGGCGGGAATACTCACCACTATACTACAACGACTTCGATGTCATAATTCCGAAATTATA
* *
76387917 TTATTTGTTATAAAGTACTTTAGAAGGTCAGAAAATACAAATCAGAGGATAGATCGCCGTT-CCG
66 TTATTTGTTATAAATTACTTTAGAAGGTCAGAAAATATAAATCAGAGGATAGATCGCCGTTGCCG
* *
76387981 GAGATCGAAGCCGGGTCACCCA-
131 GGGATCGAACCCGGGTCA-CCAG
* * *
76388003 CCTGACAGGCGGGAATACTCACCACTATACTACTACGACTTCGATGTC-TGTATTCCGAAATTAT
1 CGTGACAGGCGGGAATACTCACCACTATACTACAACGACTTCGATGTCAT-AATTCCGAAATTAT
* * *
76388067 CGTTATTTGTTATAAATTTCTTTAGAAGGTCAGAAAAAATAAATCAGAGGATAGATCGCCGTTGC
65 -ATTATTTGTTATAAATTACTTTAGAAGGTCAGAAAATATAAATCAGAGGATAGATCGCCGTTGC
*
76388132 CGGGGATCGAACCCGGGTCACCCG
129 CGGGGATCGAACCCGGGTCACCAG
* * *
76388156 CGTGACAGGCGGGAATACTCACCACTATACTACAACGACGTCGATGTCATAGTTCCAAAATTATA
1 CGTGACAGGCGGGAATACTCACCACTATACTACAACGACTTCGATGTCATAATTCCGAAATTATA
* *
76388221 TTATTTGTTATAAATTACTTTAGAAGGTCAGAAAATATAAGTCAGAGGATAGATCGCCGGTGCC-
66 TTATTTGTTATAAATTACTTTAGAAGGTCAGAAAATATAAATCAGAGGATAGATCGCCGTTGCCG
* *
76388285 GGGATCGAACCCGGATCACCCG
131 GGGATCGAACCCGGGTCACCAG
* * * * *
76388307 CGTGACAGGC--G--TACT---CACTATACTACAACGACTCCCATGCCATAATTTCGACA-T-TA
1 CGTGACAGGCGGGAATACTCACCACTATACTACAACGACTTCGATGTCATAATTCCGAAATTATA
* * * **
76388363 GTATTTCTTATAAATTACTTTAGAAGGTCAGAAAACATAAATCAGAGGATAGATCGCAATTGCCG
66 TTATTTGTTATAAATTACTTTAGAAGGTCAGAAAATATAAATCAGAGGATAGATCGCCGTTGCCG
76388428 GGGATCGAACCCGGGTTGC-CCA-
131 GGGATCGAACCCGGG-T-CACCAG
* *
76388450 CGTGACAGGCGGAAATACTCACCACCATACTACAACGACTTC
1 CGTGACAGGCGGGAATACTCACCACTATACTACAACGACTTC
76388492 TAGTGTTCAA
Statistics
Matches: 699, Mismatches: 76, Indels: 38
0.86 0.09 0.05
Matches are distributed among these distances:
142 59 0.08
143 25 0.04
144 33 0.05
145 1 0.00
147 8 0.01
149 1 0.00
150 19 0.03
151 105 0.15
152 271 0.39
153 84 0.12
154 92 0.13
155 1 0.00
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (152 bp):
CGTGACAGGCGGGAATACTCACCACTATACTACAACGACTTCGATGTCATAATTCCGAAATTATA
TTATTTGTTATAAATTACTTTAGAAGGTCAGAAAATATAAATCAGAGGATAGATCGCCGTTGCCG
GGGATCGAACCCGGGTCACCAG
Found at i:76390812 original size:25 final size:25
Alignment explanation
Indices: 76390782--76390836 Score: 101
Period size: 25 Copynumber: 2.2 Consensus size: 25
76390772 ACCATTTCAC
*
76390782 TTATGATTTATTTTTCAATAATTTT
1 TTATGATTGATTTTTCAATAATTTT
76390807 TTATGATTGATTTTTCAATAATTTT
1 TTATGATTGATTTTTCAATAATTTT
76390832 TTATG
1 TTATG
76390837 TAAAATTTTC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.27, C:0.04, G:0.07, T:0.62
Consensus pattern (25 bp):
TTATGATTGATTTTTCAATAATTTT
Found at i:76390844 original size:25 final size:25
Alignment explanation
Indices: 76390782--76390846 Score: 78
Period size: 25 Copynumber: 2.6 Consensus size: 25
76390772 ACCATTTCAC
**
76390782 TTATGATTTATTTTTCAATAATTTT
1 TTATGATAAATTTTTCAATAATTTT
**
76390807 TTATGATTGATTTTTCAATAATTTT
1 TTATGATAAATTTTTCAATAATTTT
*
76390832 TTATG-TAAAATTTTC
1 TTATGATAAATTTTTC
76390847 TTTGTTCACA
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
24 7 0.19
25 29 0.81
ACGTcount: A:0.29, C:0.05, G:0.06, T:0.60
Consensus pattern (25 bp):
TTATGATAAATTTTTCAATAATTTT
Found at i:76391727 original size:19 final size:19
Alignment explanation
Indices: 76391682--76391728 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
76391672 TAAATCTCTG
*
76391682 TTCATATTTGTTTGTTTATT
1 TTCA-ATTTGTTTGTTTATA
* *
76391702 TTAAATTTGTTTGTTTGTA
1 TTCAATTTGTTTGTTTATA
76391721 TTCAATTT
1 TTCAATTT
76391729 ATGTTTGTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
19 20 0.87
20 3 0.13
ACGTcount: A:0.19, C:0.04, G:0.11, T:0.66
Consensus pattern (19 bp):
TTCAATTTGTTTGTTTATA
Found at i:76391995 original size:33 final size:33
Alignment explanation
Indices: 76391956--76392023 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
76391946 ATTCGTGAAC
76391956 ATAAATGAATTAAACAATCTTTGTTCATGTTCA
1 ATAAATGAATTAAACAATCTTTGTTCATGTTCA
76391989 ATAAATGAATTAAACAATCTTTGTTCATGTTCA
1 ATAAATGAATTAAACAATCTTTGTTCATGTTCA
76392022 AT
1 AT
76392024 TCGTTCAATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.40, C:0.12, G:0.09, T:0.40
Consensus pattern (33 bp):
ATAAATGAATTAAACAATCTTTGTTCATGTTCA
Found at i:76399246 original size:9 final size:9
Alignment explanation
Indices: 76399234--76399272 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
76399224 ATATTTAATT
76399234 AATTTTTAA
1 AATTTTTAA
76399243 AATTTTTAAA
1 AATTTTT-AA
*
76399253 AATATTTAA
1 AATTTTTAA
*
76399262 TATTTTTAA
1 AATTTTTAA
76399271 AA
1 AA
76399273 ATTAAAAATA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
9 17 0.68
10 8 0.32
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (9 bp):
AATTTTTAA
Found at i:76399266 original size:19 final size:19
Alignment explanation
Indices: 76399238--76399274 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
76399228 TTAATTAATT
76399238 TTTAAAATTTTTAAAAATA
1 TTTAAAATTTTTAAAAATA
*
76399257 TTTAATATTTTTAAAAAT
1 TTTAAAATTTTTAAAAAT
76399275 TAAAAATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
TTTAAAATTTTTAAAAATA
Found at i:76399289 original size:17 final size:17
Alignment explanation
Indices: 76399267--76399312 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 17
76399257 TTTAATATTT
76399267 TTAAAAATTAAAAATAA
1 TTAAAAATTAAAAATAA
*
76399284 TTAAAAATTATAAAATTA
1 TTAAAAATTA-AAAATAA
*
76399302 TAAAAAATTAA
1 TTAAAAATTAA
76399313 TATGTTTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
17 11 0.42
18 15 0.58
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (17 bp):
TTAAAAATTAAAAATAA
Found at i:76400758 original size:21 final size:20
Alignment explanation
Indices: 76400732--76400770 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
76400722 ATGAGTTTTG
76400732 ATATTTGATGATAGATTATGA
1 ATATTTGATGATAG-TTATGA
76400753 ATATTTGATGATAGTTAT
1 ATATTTGATGATAGTTAT
76400771 ACAAGTTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.36, C:0.00, G:0.18, T:0.46
Consensus pattern (20 bp):
ATATTTGATGATAGTTATGA
Found at i:76402754 original size:33 final size:33
Alignment explanation
Indices: 76402713--76402775 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
76402703 CCATTTCGAA
* *
76402713 TGTCCACACGGCCTGT-GACATGAGCGTGTCTT
1 TGTCCACACGGCATGTCCACATGAGCGTGTCTT
*
76402745 TGTCTCACACGGCATGTCCACATGGGCGTGT
1 TGTC-CACACGGCATGTCCACATGAGCGTGT
76402776 GTACCCTATT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
32 4 0.15
33 11 0.42
34 11 0.42
ACGTcount: A:0.16, C:0.29, G:0.29, T:0.27
Consensus pattern (33 bp):
TGTCCACACGGCATGTCCACATGAGCGTGTCTT
Found at i:76403855 original size:5 final size:5
Alignment explanation
Indices: 76403845--76403871 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
76403835 TTAAAATGAA
76403845 AAAAT AAAAT AAAAT AAAAT AAAAT AA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AA
76403872 CTAATAACAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:76405702 original size:44 final size:43
Alignment explanation
Indices: 76405561--76406035 Score: 226
Period size: 44 Copynumber: 10.6 Consensus size: 43
76405551 ATTCTGACCT
* * * *
76405561 ACTGCAACTTCAGAGGTG-TATA-ATTGTAGCTTTAATCTATTCC
1 ACTGCAACTTCAG-GGAGATA-AGATTGTAACTTCAATCTACTCC
* * * * *
76405604 ACTGCAACTTCAGGGAAATATGATTCGCTATCTTCAGTCTGCTCC
1 ACTGCAACTTCAGGGAGATAAGATT-G-TAACTTCAATCTACTCC
*
76405649 ACTGCAACTTTAGGGAGATAAGACTTGTAACTTCAATCTACTCC
1 ACTGCAACTTCAGGGAGATAAGA-TTGTAACTTCAATCTACTCC
* * * * *
76405693 ACTGTAACTTCAGAGAGATAAGGTT-TATAGCTTTAATCTGCTCTC
1 ACTGCAACTTCAGGGAGATAAGATTGTA-A-CTTCAATCTACTC-C
* * * * * *
76405738 -CTGCAACTTTAGAGAGATAAGATTCGCTATC-CCTGATTTACTCC
1 ACTGCAACTTCAGGGAGATAAGATT-G-TAACTTC-AATCTACTCC
* * * * *
76405782 ACTGTAATTTTAGGGAGATAAGA-TATAACTTCAATCTGCTCC
1 ACTGCAACTTCAGGGAGATAAGATTGTAACTTCAATCTACTCC
* * * **
76405824 ACTGCAACTTCAAGGAGATCATATTTGTAATTTGTAGCTTTAATCTGTTCC
1 ACTGCAACTTCAGGGAGAT-A-A---G--A-TTGTAACTTCAATCTACTCC
* * * * *
76405875 ACTACAACTTCAAGGCA-ATAAGATTCGCTACCATCAGTCTACTCC
1 ACTGCAACTTC-AGGGAGATAAGATT-G-TAACTTCAATCTACTCC
* * * *
76405920 ACTGCAACTTCAAGGAGATCAGACTTGTTGTAACTTCAACCTGCTCC
1 ACTGCAACTTCAGGGAGATAAGA----TTGTAACTTCAATCTACTCC
* * * ** * *
76405967 ACTGTAACTTCAGGGAGATAAGGTTAATGGCTTCGATCTGCTCC
1 ACTGCAACTTCAGGGAGATAAGATT-GTAACTTCAATCTACTCC
*
76406011 ACTGCAACTTCAGGGAGATGAGATT
1 ACTGCAACTTCAGGGAGATAAGATT
76406036 TACCACGGTA
Statistics
Matches: 324, Mismatches: 76, Indels: 63
0.70 0.16 0.14
Matches are distributed among these distances:
42 29 0.09
43 27 0.08
44 109 0.34
45 86 0.27
46 3 0.01
47 34 0.10
48 1 0.00
49 4 0.01
50 1 0.00
51 27 0.08
52 3 0.01
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (43 bp):
ACTGCAACTTCAGGGAGATAAGATTGTAACTTCAATCTACTCC
Found at i:76405937 original size:138 final size:130
Alignment explanation
Indices: 76405584--76406022 Score: 382
Period size: 133 Copynumber: 3.2 Consensus size: 130
76405574 AGGTGTATAA
* * * * * *
76405584 TTGTAGCTTTAATCTATTCCACTGCAACTTCAGGGAAATATGATTCGCTATCTTCAGTCTGCTCC
1 TTGTAGCTTTAATCTGTTCCACTGCAACTTCAAGG-AATAAGATTCGCTACCATCAGTCTACTCC
*
76405649 ACTGCAACTTTAGGGAGATAAGACTTGTAACTTCAATCTACTCCACTGTAACTTC-AGAGAGATA
65 ACTGCAACTTTAGGGAGATAAGA--TGTAACTTCAATCTGCTCCACTGTAACTTCAAG-GAGATA
*
76405713 AGGT
127 AGAT
* * * * * *
76405717 TTATAGCTTTAATCTGCTCTC-CTGCAACTT-TAGAGAGATAAGATTCGCTATCCCTGA-TTTAC
1 TTGTAGCTTTAATCTGTTC-CACTGCAACTTCAAG-GA-ATAAGATTCGCTA-CCATCAGTCTAC
* * * *
76405779 TCCACTGTAATTTTAGGGAGATAAGATATAACTTCAATCTGCTCCACTGCAACTTCAAGGAGATC
62 TCCACTGCAACTTTAGGGAGATAAGATGTAACTTCAATCTGCTCCACTGTAACTTCAAGGAGAT-
76405844 ATATTTGTAAT
126 A-A---G--AT
*
76405855 TTGTAGCTTTAATCTGTTCCACTACAACTTCAAGGCAATAAGATTCGCTACCATCAGTCTACTCC
1 TTGTAGCTTTAATCTGTTCCACTGCAACTTCAAGG-AATAAGATTCGCTACCATCAGTCTACTCC
* * * * *
76405920 ACTGCAACTTCAAGGAGATCAGACTTGTTGTAACTTCAACCTGCTCCACTGTAACTTCAGGGAGA
65 ACTGCAACTTTAGGGAGAT-A-A---GATGTAACTTCAATCTGCTCCACTGTAACTTCAAGGAGA
*
76405985 TAAGGT
125 TAAGAT
** * ** *
76405991 TAATGGCTTCGATCTGCTCCACTGCAACTTCA
1 TTGTAGCTTTAATCTGTTCCACTGCAACTTCA
76406023 GGGAGATGAG
Statistics
Matches: 244, Mismatches: 41, Indels: 39
0.75 0.13 0.12
Matches are distributed among these distances:
131 32 0.13
132 5 0.02
133 66 0.27
134 4 0.02
136 27 0.11
137 5 0.02
138 63 0.26
139 4 0.02
140 1 0.00
141 1 0.00
142 1 0.00
143 35 0.14
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.32
Consensus pattern (130 bp):
TTGTAGCTTTAATCTGTTCCACTGCAACTTCAAGGAATAAGATTCGCTACCATCAGTCTACTCCA
CTGCAACTTTAGGGAGATAAGATGTAACTTCAATCTGCTCCACTGTAACTTCAAGGAGATAAGAT
Found at i:76412526 original size:33 final size:33
Alignment explanation
Indices: 76412484--76412550 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
76412474 TCCTCTTCTC
76412484 TTTAGATCTCTTCTTCGAATCCAGTACAATCAA
1 TTTAGATCTCTTCTTCGAATCCAGTACAATCAA
76412517 TTTAGATCTCTTCTTCGAATCCAGTACAATCAA
1 TTTAGATCTCTTCTTCGAATCCAGTACAATCAA
76412550 T
1 T
76412551 CCTCTTTGTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.30, C:0.24, G:0.09, T:0.37
Consensus pattern (33 bp):
TTTAGATCTCTTCTTCGAATCCAGTACAATCAA
Found at i:76415247 original size:46 final size:46
Alignment explanation
Indices: 76415197--76415372 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
76415187 TGATTGAGCA
76415197 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
76415243 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
76415288 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
76415336 -CCTGAGCTCGTTGAGTTGAGTTCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
76415373 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 10, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 60 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:76415353 original size:93 final size:93
Alignment explanation
Indices: 76415194--76415365 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
76415184 GGATGATTGA
*
76415194 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
76415259 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
76415287 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
*
76415351 TTGAGTTCGAGTTCG
65 TTGAGTCCGAGTTCG
76415366 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:76433099 original size:55 final size:55
Alignment explanation
Indices: 76433034--76433139 Score: 194
Period size: 55 Copynumber: 1.9 Consensus size: 55
76433024 AAATTAAAAA
*
76433034 GTAATATAAACATATTTTAAAATTTTAAAAATAATATGGATGAGATCTAAATTGG
1 GTAATATAAACATATTTTAAAATTTTAAAAATAATATAGATGAGATCTAAATTGG
*
76433089 GTAATATAAACATATTTTAAATTTTTAAAAATAATATAGATGAGATCTAAA
1 GTAATATAAACATATTTTAAAATTTTAAAAATAATATAGATGAGATCTAAA
76433140 ATAGGCTTGC
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 49 1.00
ACGTcount: A:0.49, C:0.04, G:0.10, T:0.37
Consensus pattern (55 bp):
GTAATATAAACATATTTTAAAATTTTAAAAATAATATAGATGAGATCTAAATTGG
Found at i:76441709 original size:32 final size:32
Alignment explanation
Indices: 76441662--76441740 Score: 99
Period size: 32 Copynumber: 2.5 Consensus size: 32
76441652 GTTTACGTCT
* *
76441662 TAAACTTGTC-CAAAAGTATCTAGTT-GATACC
1 TAAACTTGTCAAAAAAGTATCTAATTAG-TACC
*
76441693 TAAACTTGTCAAAAAAGTATCTAATTAGTTCC
1 TAAACTTGTCAAAAAAGTATCTAATTAGTACC
*
76441725 TAAACTCGTCAAAAAA
1 TAAACTTGTCAAAAAA
76441741 ATATTATAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
31 10 0.24
32 31 0.74
33 1 0.02
ACGTcount: A:0.42, C:0.18, G:0.10, T:0.30
Consensus pattern (32 bp):
TAAACTTGTCAAAAAAGTATCTAATTAGTACC
Found at i:76443532 original size:14 final size:14
Alignment explanation
Indices: 76443515--76443553 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
76443505 TGTACAGTAG
76443515 ATTTTGAAAAAATA
1 ATTTTGAAAAAATA
* *
76443529 ATTTTGAAAAGATG
1 ATTTTGAAAAAATA
*
76443543 GTTTTGAAAAA
1 ATTTTGAAAAA
76443554 TATCTCGGGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.49, C:0.00, G:0.15, T:0.36
Consensus pattern (14 bp):
ATTTTGAAAAAATA
Found at i:76443637 original size:153 final size:153
Alignment explanation
Indices: 76443346--76443625 Score: 391
Period size: 153 Copynumber: 1.8 Consensus size: 153
76443336 AGCTGGACGT
* *
76443346 TTTTTTTGTACAATTGACTCTGAAAAAATAATTTTGAGAAGATGGTTCTGAAAAAATATCCCAAG
1 TTTTTTTGTACAATAGACTCTGAAAAAATAATTTTGAAAAGATGGTTCTGAAAAAATATCCCAAG
* * *
76443411 ATTTACAGGAAATTTGATAGTTGGGATGAAAAACGCTTCAAGAAAGATGCATTGTTAGCAAAAGT
66 ATTTACAGGAAATTTGATAGTTGGGATGAAAAACGCTTCAAGAAAGATGCACTATCAGCAAAAGT
76443476 ACTGAAAAAGCTCCCAGTTTGAC
131 ACTGAAAAAGCTCCCAGTTTGAC
* * * * * **
76443499 TTTTTTTGTACAGTAGATTTTGAAAAAATAATTTTGAAAAGATGGTTTTG-AAAAATATCTCGGG
1 TTTTTTTGTACAATAGACTCTGAAAAAATAATTTTGAAAAGATGGTTCTGAAAAAATATCCCAAG
* * * * *
76443563 ATTTACGGGAAATTTGATAGTTGGGTTTGAAAAATGCTTCAAGCAGGATGCACTATCAGCAAA
66 ATTTACAGGAAATTTGATAGTTGGG-ATGAAAAACGCTTCAAGAAAGATGCACTATCAGCAAA
76443626 TATATTGAAA
Statistics
Matches: 109, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
152 35 0.32
153 74 0.68
ACGTcount: A:0.37, C:0.11, G:0.20, T:0.32
Consensus pattern (153 bp):
TTTTTTTGTACAATAGACTCTGAAAAAATAATTTTGAAAAGATGGTTCTGAAAAAATATCCCAAG
ATTTACAGGAAATTTGATAGTTGGGATGAAAAACGCTTCAAGAAAGATGCACTATCAGCAAAAGT
ACTGAAAAAGCTCCCAGTTTGAC
Found at i:76443666 original size:153 final size:153
Alignment explanation
Indices: 76443366--76443667 Score: 360
Period size: 153 Copynumber: 2.0 Consensus size: 153
76443356 CAATTGACTC
*
76443366 TGAAAAAATAATTTTGAGAAGATGGTTCTGAAAAAATATCCCAAGATTTACAGGAAATTTGATAG
1 TGAAAAAATAATTTTGAAAAGATGGTTCTGAAAAAATATCCCAAGATTTACAGGAAATTTGATAG
* * * * *
76443431 TTGGGATGAAAAACGCTTCAAGAAAGATGCATTGTTAGCAAAAGTACTGAAAAAGCTCCCAGTTT
66 TTGGGATGAAAAACGCTTCAAGAAAGATGCACTATCAGCAAAAGTACTGAAAAAGCTCCAAGTTG
** *
76443496 GACTTTTTTTGTACAGTAGATTT
131 GACGGTCTTTGTACAGTAGATTT
* * ** *
76443519 TGAAAAAATAATTTTGAAAAGATGGTTTTG-AAAAATATCTCGGGATTTACGGGAAATTTGATAG
1 TGAAAAAATAATTTTGAAAAGATGGTTCTGAAAAAATATCCCAAGATTTACAGGAAATTTGATAG
* * * * * *
76443583 TTGGGTTTGAAAAATGCTTCAAGCAGGATGCACTATCAGCAAATA-TATTGAAAAAAAGCTCTAA
66 TTGGG-ATGAAAAACGCTTCAAGAAAGATGCACTATCAGCAAA-AGTACTG--AAAAAGCTCCAA
76443647 GTTGGACGGTCTTT-T-CAGTAG
127 GTTGGACGGTCTTTGTACAGTAG
76443668 TCTGGTATAA
Statistics
Matches: 125, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
152 35 0.28
153 68 0.54
154 2 0.02
155 20 0.16
ACGTcount: A:0.38, C:0.11, G:0.21, T:0.31
Consensus pattern (153 bp):
TGAAAAAATAATTTTGAAAAGATGGTTCTGAAAAAATATCCCAAGATTTACAGGAAATTTGATAG
TTGGGATGAAAAACGCTTCAAGAAAGATGCACTATCAGCAAAAGTACTGAAAAAGCTCCAAGTTG
GACGGTCTTTGTACAGTAGATTT
Found at i:76453668 original size:11 final size:11
Alignment explanation
Indices: 76453654--76453691 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
76453644 ATGAGATATT
76453654 TTATTAATTTA
1 TTATTAATTTA
76453665 TTATT-ATTTCA
1 TTATTAATTT-A
*
76453676 TTATTATTTTA
1 TTATTAATTTA
76453687 TTATT
1 TTATT
76453692 TATTATTTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
10 4 0.17
11 17 0.71
12 3 0.12
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (11 bp):
TTATTAATTTA
Found at i:76455633 original size:46 final size:46
Alignment explanation
Indices: 76455566--76455839 Score: 336
Period size: 46 Copynumber: 6.0 Consensus size: 46
76455556 GTTTTCTGAA
** *
76455566 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * *
76455612 ATGAAATGTGTAAGACCATGGTTGAAAAATACCATGGTAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * ** *
76455658 GA-GAAATGAATAAGACAATGGTTGAAAGATACCATGACAATGTGAT
1 -ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
76455704 ATGAAATGAATAAGACCATGGTCGAAAGATACCATGGAAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
76455750 AGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * * *
76455796 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
76455840 TCGAAGATAA
Statistics
Matches: 198, Mismatches: 27, Indels: 6
0.86 0.12 0.03
Matches are distributed among these distances:
45 2 0.01
46 195 0.98
47 1 0.01
ACGTcount: A:0.43, C:0.13, G:0.23, T:0.21
Consensus pattern (46 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:76455820 original size:138 final size:138
Alignment explanation
Indices: 76455566--76455824 Score: 385
Period size: 138 Copynumber: 1.9 Consensus size: 138
76455556 GTTTTCTGAA
** * * * * **
76455566 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCAT
1 ATGAAATGAATAAGACCATGGTCGAAAGATACCATGGAAACATGACAGGAAATGAATAAGACCAT
* *
76455631 GGTTGAAAAATACCATGGTAACATGACGAGAAATGAATAAGACAATGGTTGAAAGATACCATGAC
66 GGTTGAAAAATACCATGGCAACATGACGAGAAATGAATAAGACAATAGTTGAAAGATACCATGAC
76455696 AATGTGAT
131 AATGTGAT
76455704 ATGAAATGAATAAGACCATGGTCGAAAGATACCATGGAAACATGACAGGAAATGAATAAGACCAT
1 ATGAAATGAATAAGACCATGGTCGAAAGATACCATGGAAACATGACAGGAAATGAATAAGACCAT
* * *
76455769 GGTTGAAAGATACCATGGCAACATGAC-AGAAAATGAGTAAGACCATAGTTGAAAGA
66 GGTTGAAAAATACCATGGCAACATGACGAG-AAATGAATAAGACAATAGTTGAAAGA
76455825 CACTATGGCA
Statistics
Matches: 107, Mismatches: 13, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
137 2 0.02
138 105 0.98
ACGTcount: A:0.44, C:0.12, G:0.23, T:0.20
Consensus pattern (138 bp):
ATGAAATGAATAAGACCATGGTCGAAAGATACCATGGAAACATGACAGGAAATGAATAAGACCAT
GGTTGAAAAATACCATGGCAACATGACGAGAAATGAATAAGACAATAGTTGAAAGATACCATGAC
AATGTGAT
Found at i:76455953 original size:26 final size:25
Alignment explanation
Indices: 76455922--76455991 Score: 70
Period size: 26 Copynumber: 2.7 Consensus size: 25
76455912 ACCAGATGAC
*
76455922 GAATGGTTATATGAATTGGTTATACAA
1 GAATGGTTATATGAAAT-GTT-TACAA
* *
76455949 -AATGGTTGTGTGAAATGTTTACAA
1 GAATGGTTATATGAAATGTTTACAA
76455973 GAATTGGTTATATGGAAAT
1 GAA-TGGTTATAT-GAAAT
76455992 ATATGTACAA
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
24 5 0.14
25 5 0.14
26 20 0.57
27 5 0.14
ACGTcount: A:0.36, C:0.03, G:0.24, T:0.37
Consensus pattern (25 bp):
GAATGGTTATATGAAATGTTTACAA
Found at i:76458827 original size:23 final size:23
Alignment explanation
Indices: 76458800--76458848 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
76458790 GTTTTTTCCT
*
76458800 TTTTACCAAAAAAATAAAAATAA
1 TTTTACCAAAAAAATAAAAAAAA
*
76458823 TTTTACTAAAAAAATAAAAAAAA
1 TTTTACCAAAAAAATAAAAAAAA
76458846 TTT
1 TTT
76458849 AAAAAACAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (23 bp):
TTTTACCAAAAAAATAAAAAAAA
Found at i:76466681 original size:15 final size:14
Alignment explanation
Indices: 76466661--76466691 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
76466651 TAGAAAATAT
76466661 TATGAATAATAAGAA
1 TATGAATAATAA-AA
76466676 TATGAATAATAAAA
1 TATGAATAATAAAA
76466690 TA
1 TA
76466692 CAAAACATAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.25
15 12 0.75
ACGTcount: A:0.61, C:0.00, G:0.10, T:0.29
Consensus pattern (14 bp):
TATGAATAATAAAA
Found at i:76469613 original size:14 final size:17
Alignment explanation
Indices: 76469587--76469630 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 17
76469577 TGACACATCT
76469587 TAAGTA-TTAAATTTT-
1 TAAGTACTTAAATTTTA
76469602 TAA-TAC-TAAATTTTA
1 TAAGTACTTAAATTTTA
76469617 TAAGTACTTAAATT
1 TAAGTACTTAAATT
76469631 ATATTAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
14 10 0.40
15 6 0.24
16 3 0.12
17 6 0.24
ACGTcount: A:0.43, C:0.05, G:0.05, T:0.48
Consensus pattern (17 bp):
TAAGTACTTAAATTTTA
Found at i:76474492 original size:21 final size:21
Alignment explanation
Indices: 76474466--76474506 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
76474456 ATCTGCTCAA
* *
76474466 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
76474487 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
76474507 TTGCTTGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:76478359 original size:22 final size:22
Alignment explanation
Indices: 76478317--76478361 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
76478307 TAAGTTTAGG
*
76478317 GTATAAAAATAGTTCCGAATAT
1 GTATAAAAATAGTTCCCAATAT
*
76478339 GTATACAAATA-TTCTCCAATAT
1 GTATAAAAATAGTTC-CCAATAT
76478361 G
1 G
76478362 GTATTGAAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 3 0.15
22 17 0.85
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.33
Consensus pattern (22 bp):
GTATAAAAATAGTTCCCAATAT
Found at i:76485983 original size:39 final size:39
Alignment explanation
Indices: 76485934--76486073 Score: 235
Period size: 39 Copynumber: 3.6 Consensus size: 39
76485924 GCTCTGGTGA
76485934 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
*
76485973 GCTTCTGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
* *
76486012 GCTTCTGTTAGCCTTCGGGCTTCCATTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
* *
76486051 ACTTCAGTTAGACTTCGGGCTTC
1 GCTTCAGTTAGCCTTCGGGCTTC
76486074 AGATCACGAT
Statistics
Matches: 96, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 96 1.00
ACGTcount: A:0.13, C:0.26, G:0.22, T:0.39
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
Found at i:76487411 original size:54 final size:54
Alignment explanation
Indices: 76487344--76487499 Score: 149
Period size: 54 Copynumber: 2.9 Consensus size: 54
76487334 CCATGGCAAC
* * * *
76487344 ATGTGA-TATGTGATTTTCATATAAGACCATAGCTGGGCTATGGTATCA-ATG-T
1 ATGTGATTATGTGATTTCCATATAAGACCATAACTAGGCTATGGCATCAGA-GAT
* *
76487396 GATGTGATTATGTGATTTCCTTATAAGACCATAATTAGGCTATGGCATCAGAGAT
1 -ATGTGATTATGTGATTTCCATATAAGACCATAACTAGGCTATGGCATCAGAGAT
* * * * * * *
76487451 ATGTGATTATGTG-CTTCCGTATAAAATCATATCTGGGATATGGCATCAG
1 ATGTGATTATGTGATTTCCATATAAGACCATAACTAGGCTATGGCATCAG
76487500 TGTGATATGT
Statistics
Matches: 86, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
53 34 0.40
54 50 0.58
55 2 0.02
ACGTcount: A:0.29, C:0.13, G:0.22, T:0.35
Consensus pattern (54 bp):
ATGTGATTATGTGATTTCCATATAAGACCATAACTAGGCTATGGCATCAGAGAT
Found at i:76495984 original size:206 final size:206
Alignment explanation
Indices: 76495622--76496343 Score: 1142
Period size: 206 Copynumber: 3.5 Consensus size: 206
76495612 GCAGATCTGG
*
76495622 CTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGAAAATCGAAGACATAGCT
1 CTGAAGC-AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCT
* * *
76495687 GATTTGG-TTTC-CGTGTGCTTACACAGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTT
65 GATTTGGCTTTCAC--GTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTC
**
76495750 AGAGAACAAATAAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCCAACC
128 AGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCCAACC
76495815 TTCAGATGTTTATA
193 TTCAGATGTTTATA
* *
76495829 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCAAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
*
76495894 ATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
*
76495959 GAACAAATCGAAGTTTGGCGTCTCCATATTCGATGGAGGGCAGACACATAGCAGATCCAACCTTC
131 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCCAACCTTC
*
76496024 AGATGTCTATA
196 AGATGTTTATA
* * *
76496035 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGCGCTTATAAGGAGCAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
*
76496100 ATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* * * * * *
76496165 GAACAAATCGAAGTTTGGCGTTTCTATATTCAACGGAGAGCAGACACATAGCAGATCTAACTTTC
131 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCCAACCTTC
* * *
76496230 AGACGATTAGA
196 AGATGTTTATA
* * * *
76496241 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGGTCACAAGGAGCAAATCGAAGACATAGCAG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
*
76496306 ATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAG
66 ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAG
76496344 CATCTCTGTA
Statistics
Matches: 479, Mismatches: 34, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
206 467 0.97
207 11 0.02
208 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.28
Consensus pattern (206 bp):
CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCCAACCTTC
AGATGTTTATA
Found at i:76497997 original size:23 final size:23
Alignment explanation
Indices: 76497971--76498015 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
76497961 TATTTATTTT
76497971 TTAAAAAAACTATACATATATTA
1 TTAAAAAAACTATACATATATTA
* **
76497994 TTAAAAATACTATTTATATATT
1 TTAAAAAAACTATACATATATT
76498016 TATATAAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.42
Consensus pattern (23 bp):
TTAAAAAAACTATACATATATTA
Found at i:76498278 original size:38 final size:39
Alignment explanation
Indices: 76498235--76498320 Score: 97
Period size: 38 Copynumber: 2.3 Consensus size: 39
76498225 TTTTTAACTC
76498235 ATATTATATACATATTTCATTATTAACT-AT-TTATTTAT
1 ATATTATATACATATTTCATTATTAACTGATATT-TTTAT
* * ** *
76498273 GTATTATGT-GTTATTTCATTTTTAACTGATATTTTTAT
1 ATATTATATACATATTTCATTATTAACTGATATTTTTAT
76498311 ATATTATATA
1 ATATTATATA
76498321 ATTCTTTTAC
Statistics
Matches: 38, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
37 15 0.39
38 21 0.55
39 2 0.05
ACGTcount: A:0.33, C:0.06, G:0.05, T:0.57
Consensus pattern (39 bp):
ATATTATATACATATTTCATTATTAACTGATATTTTTAT
Found at i:76500510 original size:53 final size:53
Alignment explanation
Indices: 76500430--76500564 Score: 216
Period size: 53 Copynumber: 2.5 Consensus size: 53
76500420 ATCAATATCT
* *
76500430 TTCTTATTACATTTGCTATCCTTGATTAACTTATTCATTTCGAGTTAATTTCC
1 TTCTTATTACATTTGCTATCTTTGATTAACTTATTCATTTCGAGTTAACTTCC
* *
76500483 TTCTTATTACATTTTCTATCTTTGATTAACTTATTCATTTCGAGTTAACTTCT
1 TTCTTATTACATTTGCTATCTTTGATTAACTTATTCATTTCGAGTTAACTTCC
* *
76500536 TTCTTATTGCATTTGCTATATTTGATTAA
1 TTCTTATTACATTTGCTATCTTTGATTAA
76500565 TTCATTTTGA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
53 75 1.00
ACGTcount: A:0.23, C:0.16, G:0.07, T:0.53
Consensus pattern (53 bp):
TTCTTATTACATTTGCTATCTTTGATTAACTTATTCATTTCGAGTTAACTTCC
Found at i:76501068 original size:46 final size:46
Alignment explanation
Indices: 76500987--76501074 Score: 108
Period size: 46 Copynumber: 1.9 Consensus size: 46
76500977 TGAAGAAGCC
* * *
76500987 ACAAATCCTGTACCCTTGAGCTGTGATGGATTGGATTGAAGATGAT
1 ACAAATCCTATACCATTGAGCTGTGATGGATTGGATGGAAGATGAT
*
76501033 ACAAATCCTATACCATTGAGTTGT-AGTGGGA-TGGATGGAAGA
1 ACAAATCCTATACCATTGAGCTGTGA-T-GGATTGGATGGAAGA
76501075 AACCAAATTT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
45 1 0.03
46 32 0.89
47 3 0.08
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.28
Consensus pattern (46 bp):
ACAAATCCTATACCATTGAGCTGTGATGGATTGGATGGAAGATGAT
Found at i:76501552 original size:45 final size:45
Alignment explanation
Indices: 76501457--76501651 Score: 139
Period size: 45 Copynumber: 4.4 Consensus size: 45
76501447 TTAGTGGAGT
* * * * *
76501457 AGATTGAAGACA-CAAA-CTTTATCTCCCTGAAATTGCAGCAGAGC
1 AGATTGAAGATAGCAAATC-TTATTTCCCTGAAGTTGCAGCGGAAC
** * *
76501501 TA-ATTGAAGATAGCGGATCTTATTTCCCTGACGTTGCAGTGGAAC
1 -AGATTGAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGCGGAAC
** * * * * *
76501546 AGATTGAAGCCA-CCAATCTTATCTCCTTGAAGTTGCAGCGCAGC
1 AGATTGAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGCGGAAC
* * ** *
76501590 AGACTGAATATAGCAAATCTTATTTCCCAAAAGTTGCAGCGGAAT
1 AGATTGAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGCGGAAC
*
76501635 AGATTGAAGCTA-CAAAT
1 AGATTGAAGATAGCAAAT
76501652 TATGGCGGAT
Statistics
Matches: 112, Mismatches: 34, Indels: 9
0.72 0.22 0.06
Matches are distributed among these distances:
44 47 0.42
45 64 0.57
46 1 0.01
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (45 bp):
AGATTGAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGCGGAAC
Found at i:76501603 original size:89 final size:89
Alignment explanation
Indices: 76501457--76501650 Score: 214
Period size: 89 Copynumber: 2.2 Consensus size: 89
76501447 TTAGTGGAGT
* * **
76501457 AGATTGAAGACACAAACTTTATCTCCCTGAAATTGCAGCAGAGCTAATTGAAGATAGCGGATCTT
1 AGATTGAAGCCACAAACTTTATCTCCCTGAAATTGCAGCAGAGCTAACTGAAGATAGCAAATCTT
** * *
76501522 ATTTCCCTGACGTTGCAGTGGAAC
66 ATTTCCCAAAAGTTGCAGCGGAAC
* * * *
76501546 AGATTGAAGCCACCAA-TCTTATCTCCTTGAAGTTGCAGC-GCAGC-AGACTGAATATAGCAAAT
1 AGATTGAAGCCACAAACT-TTATCTCCCTGAAATTGCAGCAG-AGCTA-ACTGAAGATAGCAAAT
*
76501608 CTTATTTCCCAAAAGTTGCAGCGGAAT
63 CTTATTTCCCAAAAGTTGCAGCGGAAC
*
76501635 AGATTGAAGCTACAAA
1 AGATTGAAGCCACAAA
76501651 TTATGGCGGA
Statistics
Matches: 87, Mismatches: 15, Indels: 6
0.81 0.14 0.06
Matches are distributed among these distances:
88 3 0.03
89 84 0.97
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.26
Consensus pattern (89 bp):
AGATTGAAGCCACAAACTTTATCTCCCTGAAATTGCAGCAGAGCTAACTGAAGATAGCAAATCTT
ATTTCCCAAAAGTTGCAGCGGAAC
Found at i:76501738 original size:99 final size:99
Alignment explanation
Indices: 76501560--76501786 Score: 260
Period size: 99 Copynumber: 2.3 Consensus size: 99
76501550 TGAAGCCACC
* * * * * *
76501560 AATCTTATCTCCTTGAAGTTGCAGCGCAGCAGACTGAATATAGCAAATCTTATTTCCCAAAAGTT
1 AATCTTACCTCCTTGAAGTTGCAGCGGAGCAAACTGAAGACAACAAATCTTATTTCCCAAAAGTT
* * * *
76501625 GCAGCGGAATAGATTGAAGCTACAAATTATGGCG
66 GCAGCGGAACAGATTAAAGCTACAAATTACGACG
* * ** *
76501659 GATCTTACCTCCTTGAAGTTGCAGCGGAGCAAACTGAAGACAACGAATCTTATTTCCCTGATGTT
1 AATCTTACCTCCTTGAAGTTGCAGCGGAGCAAACTGAAGACAACAAATCTTATTTCCCAAAAGTT
*
76501724 G-TGCTGGAACAGATTAAAGCTACAAATTACGACG
66 GCAGC-GGAACAGATTAAAGCTACAAATTACGACG
* *
76501758 AATCTTATCTTCC-TGAAGTTGCAGTGGAG
1 AATCTTA-CCTCCTTGAAGTTGCAGCGGAG
76501787 TAGATTGACG
Statistics
Matches: 107, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
98 2 0.02
99 101 0.94
100 4 0.04
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (99 bp):
AATCTTACCTCCTTGAAGTTGCAGCGGAGCAAACTGAAGACAACAAATCTTATTTCCCAAAAGTT
GCAGCGGAACAGATTAAAGCTACAAATTACGACG
Found at i:76504532 original size:26 final size:26
Alignment explanation
Indices: 76504496--76504605 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
76504486 CATGAAATTC
76504496 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
76504522 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
76504548 TTATCATGGAATATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
76504574 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
76504600 TTATCA
1 TTATCA
76504606 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:76505958 original size:27 final size:27
Alignment explanation
Indices: 76505928--76505979 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
76505918 TAATAATAAT
76505928 AAAAGATAAAAGAAAT-AAAAGAATATG
1 AAAAGATAAAA-AAATGAAAAGAATATG
* *
76505955 AAAATATAAAAAAATGAATAGAATA
1 AAAAGATAAAAAAATGAAAAGAATA
76505980 CATAATAAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 4 0.18
27 18 0.82
ACGTcount: A:0.71, C:0.00, G:0.12, T:0.17
Consensus pattern (27 bp):
AAAAGATAAAAAAATGAAAAGAATATG
Found at i:76506105 original size:24 final size:22
Alignment explanation
Indices: 76506078--76506131 Score: 63
Period size: 24 Copynumber: 2.3 Consensus size: 22
76506068 TAAAGAGTAA
76506078 AAATAATAATAAAATAAATCAAAC
1 AAATAATAA-AAAATAAA-CAAAC
*
76506102 AAATAACATAAAAAATAAACAAAT
1 AAAT-A-ATAAAAAATAAACAAAC
76506126 AAATAA
1 AAATAA
76506132 ATAAGACAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
22 1 0.04
23 1 0.04
24 12 0.44
25 9 0.33
26 4 0.15
ACGTcount: A:0.74, C:0.07, G:0.00, T:0.19
Consensus pattern (22 bp):
AAATAATAAAAAATAAACAAAC
Found at i:76506107 original size:13 final size:12
Alignment explanation
Indices: 76506089--76506146 Score: 55
Period size: 13 Copynumber: 4.7 Consensus size: 12
76506079 AATAATAATA
76506089 AAATAAATCAAAC
1 AAATAAAT-AAAC
76506102 AAATAACATAAA-
1 AAATAA-ATAAAC
* *
76506114 AAATAAACAAAT
1 AAATAAATAAAC
76506126 AAATAAATAAGAC
1 AAATAAATAA-AC
*
76506139 AAGTAAAT
1 AAATAAAT
76506147 GATTCTAAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
11 4 0.11
12 15 0.39
13 17 0.45
14 2 0.05
ACGTcount: A:0.71, C:0.09, G:0.03, T:0.17
Consensus pattern (12 bp):
AAATAAATAAAC
Found at i:76506123 original size:20 final size:20
Alignment explanation
Indices: 76506093--76506132 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
76506083 ATAATAAAAT
76506093 AAATCAAACAAATAACATAAA
1 AAATCAAACAAATAA-ATAAA
76506114 AAAT-AAACAAATAAATAAA
1 AAATCAAACAAATAAATAAA
76506133 TAAGACAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.26
20 10 0.53
21 4 0.21
ACGTcount: A:0.75, C:0.10, G:0.00, T:0.15
Consensus pattern (20 bp):
AAATCAAACAAATAAATAAA
Found at i:76506131 original size:4 final size:4
Alignment explanation
Indices: 76506089--76506135 Score: 51
Period size: 4 Copynumber: 11.5 Consensus size: 4
76506079 AATAATAATA
* *
76506089 AAAT AAAT CAAAC AAAT AACAT AAA- AAAT AAAC AAAT AAAT AAAT AA
1 AAAT AAAT -AAAT AAAT AA-AT AAAT AAAT AAAT AAAT AAAT AAAT AA
76506136 GACAAGTAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
3 3 0.08
4 26 0.72
5 7 0.19
ACGTcount: A:0.74, C:0.09, G:0.00, T:0.17
Consensus pattern (4 bp):
AAAT
Found at i:76506145 original size:17 final size:16
Alignment explanation
Indices: 76506089--76506146 Score: 55
Period size: 16 Copynumber: 3.5 Consensus size: 16
76506079 AATAATAATA
* *
76506089 AAATAAATCAAACAAAT
1 AAATAAAT-AAATAAAC
76506106 AACATAAA-AAATAAAC
1 AA-ATAAATAAATAAAC
76506122 AAATAAATAAATAAGAC
1 AAATAAATAAATAA-AC
*
76506139 AAGTAAAT
1 AAATAAAT
76506147 GATTCTAAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
15 5 0.14
16 14 0.40
17 11 0.31
18 5 0.14
ACGTcount: A:0.71, C:0.09, G:0.03, T:0.17
Consensus pattern (16 bp):
AAATAAATAAATAAAC
Found at i:76506533 original size:21 final size:21
Alignment explanation
Indices: 76506509--76506550 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
76506499 TTAAAGGGGC
76506509 AAATTAAAAAATATAAAAAAT
1 AAATTAAAAAATATAAAAAAT
* * *
76506530 AAATTTAAAATTTTAAAAAAT
1 AAATTAAAAAATATAAAAAAT
76506551 TCAGAAGGAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (21 bp):
AAATTAAAAAATATAAAAAAT
Found at i:76514228 original size:26 final size:26
Alignment explanation
Indices: 76514198--76514331 Score: 241
Period size: 26 Copynumber: 5.2 Consensus size: 26
76514188 TGAAATGCCC
76514198 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
76514224 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
76514250 ATCATGGAACATTTACCTAACCTATT
1 ATCATGGAACATTTACCTAACCCATT
* *
76514276 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
76514302 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
76514328 ATCA
1 ATCA
76514332 CTTTGTACCA
Statistics
Matches: 102, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 102 1.00
ACGTcount: A:0.35, C:0.25, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:76521465 original size:26 final size:26
Alignment explanation
Indices: 76521435--76521542 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
76521425 TGAAATGCCC
76521435 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
76521461 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
76521487 ATCATGAAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
76521513 ATCATGGAACATTTATCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
76521539 ATCA
1 ATCA
76521543 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:76524650 original size:43 final size:42
Alignment explanation
Indices: 76524590--76524711 Score: 149
Period size: 43 Copynumber: 2.9 Consensus size: 42
76524580 GAGGTGTGAT
* *
76524590 TTCATGTGAGACCATGTCTGGGACATTGGCATCGATATAAGA
1 TTCATGTAAGACTATGTCTGGGACATTGGCATCGATATAAGA
* *
76524632 TTACATGTAAGACTATGTCTGGGACATTAGCATCG-TATACGA
1 TT-CATGTAAGACTATGTCTGGGACATTGGCATCGATATAAGA
* * *
76524674 TTCGTATAAGACCT-TGTCTGGGACAGTGGCATCGATAT
1 TTCATGTAAGA-CTATGTCTGGGACATTGGCATCGATAT
76524712 GTGAAAATAT
Statistics
Matches: 69, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
41 25 0.36
42 15 0.22
43 29 0.42
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (42 bp):
TTCATGTAAGACTATGTCTGGGACATTGGCATCGATATAAGA
Found at i:76524696 original size:41 final size:43
Alignment explanation
Indices: 76524598--76524711 Score: 144
Period size: 41 Copynumber: 2.7 Consensus size: 43
76524588 ATTTCATGTG
* *
76524598 AGACCATGTCTGGGACATTGGCATCGATATAAGATTACATGTA
1 AGACCTTGTCTGGGACATTGGCATCGATATAAGATTACATATA
* * *
76524641 AGA-CTATGTCTGGGACATTAGCATCG-TATACGATT-CGTATA
1 AGACCT-TGTCTGGGACATTGGCATCGATATAAGATTACATATA
*
76524682 AGACCTTGTCTGGGACAGTGGCATCGATAT
1 AGACCTTGTCTGGGACATTGGCATCGATAT
76524712 GTGAAAATAT
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
41 25 0.41
42 14 0.23
43 22 0.36
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.29
Consensus pattern (43 bp):
AGACCTTGTCTGGGACATTGGCATCGATATAAGATTACATATA
Found at i:76527381 original size:15 final size:16
Alignment explanation
Indices: 76527351--76527383 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
76527341 ATAATTATAT
*
76527351 TTTATTTCTGTGTTTA
1 TTTATTTATGTGTTTA
76527367 TTTATTTAT-TGTTTA
1 TTTATTTATGTGTTTA
76527382 TT
1 TT
76527384 ATTAATTCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.15, C:0.03, G:0.09, T:0.73
Consensus pattern (16 bp):
TTTATTTATGTGTTTA
Found at i:76527443 original size:26 final size:26
Alignment explanation
Indices: 76527414--76527466 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
76527404 TTATTACCAC
*
76527414 TATCATTACTATTATCTTTTAT-TTTT
1 TATCACTACTATTAT-TTTTATGTTTT
*
76527440 TATCACTATTATTATTTTTATGTTTT
1 TATCACTACTATTATTTTTATGTTTT
76527466 T
1 T
76527467 TATCTATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.23, C:0.09, G:0.02, T:0.66
Consensus pattern (26 bp):
TATCACTACTATTATTTTTATGTTTT
Found at i:76527501 original size:10 final size:10
Alignment explanation
Indices: 76527486--76527523 Score: 69
Period size: 10 Copynumber: 3.9 Consensus size: 10
76527476 GCGTTTCATA
76527486 ATTTATTTTT
1 ATTTATTTTT
76527496 ATTTATTTTT
1 ATTTATTTTT
76527506 ATTTATTTTT
1 ATTTATTTTT
76527516 ATTT-TTTT
1 ATTTATTTT
76527524 ACTTAATACT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
9 4 0.14
10 24 0.86
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (10 bp):
ATTTATTTTT
Found at i:76527508 original size:16 final size:16
Alignment explanation
Indices: 76527487--76527521 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
76527477 CGTTTCATAA
76527487 TTTATTTTTATTTATT
1 TTTATTTTTATTTATT
76527503 TTTATTTATT-TTTATT
1 TTTATTT-TTATTTATT
76527519 TTT
1 TTT
76527522 TTACTTAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 16 0.89
17 2 0.11
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (16 bp):
TTTATTTTTATTTATT
Found at i:76540522 original size:1 final size:1
Alignment explanation
Indices: 76540516--76540559 Score: 79
Period size: 1 Copynumber: 44.0 Consensus size: 1
76540506 TATTATCAAC
*
76540516 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
76540560 TACCAACAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
1 41 1.00
ACGTcount: A:0.98, C:0.02, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:76544107 original size:77 final size:77
Alignment explanation
Indices: 76543980--76544134 Score: 283
Period size: 77 Copynumber: 2.0 Consensus size: 77
76543970 TATATATTGA
*
76543980 ACCGCATCGCATAGTACAGAGCAGGCGATAGAAAAGAGTGTAATACTATGGACTAGAAAAAGTTT
1 ACCGCATCGCATAGTACAGAGCAGGCGAAAGAAAAGAGTGTAATACTATGGACTAGAAAAAGTTT
76544045 AACATGGAGGAG
66 AACATGGAGGAG
* *
76544057 ACCGCATCGCATAGTACAGGGCAGGTGAAAGAAAAGAGTGTAATACTATGGACTAGAAAAAGTTT
1 ACCGCATCGCATAGTACAGAGCAGGCGAAAGAAAAGAGTGTAATACTATGGACTAGAAAAAGTTT
76544122 AACATGGAGGAG
66 AACATGGAGGAG
76544134 A
1 A
76544135 GAATTTACCT
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
77 75 1.00
ACGTcount: A:0.41, C:0.14, G:0.28, T:0.18
Consensus pattern (77 bp):
ACCGCATCGCATAGTACAGAGCAGGCGAAAGAAAAGAGTGTAATACTATGGACTAGAAAAAGTTT
AACATGGAGGAG
Found at i:76549440 original size:51 final size:51
Alignment explanation
Indices: 76549364--76549672 Score: 378
Period size: 52 Copynumber: 6.2 Consensus size: 51
76549354 TACTTCTGAT
* *
76549364 CAAGTGAAAAGTGATAAGTGGTAGCTTTAGCTACA-TTATCTGATCAAGTGA
1 CAAGTG-AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGA
* * *
76549415 CAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTG-
1 CAAGT-GAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGA
* *
76549466 --A---AAAGTGATAAGT-ATAGCTTCGGCTATACTTATCTGATCAAGTGA
1 CAAGTGAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGA
76549511 C-----AAAGTGATAAGTGATAGCTT-AGCTACACTTATCTGATCAAGTGA
1 CAAGTGAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGA
*
76549556 CAAGTGGAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
1 CAAGT-GAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGA
*
76549608 CAAGTGAAAAGTGATAAGTGATAGCTT-AGCTACACTTATCTGATCAAGAGA
1 CAAGTG-AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGA
76549659 CAAAGTGATAAGTG
1 C-AAGTGA-AAGTG
76549673 GCTACACTTA
Statistics
Matches: 233, Mismatches: 10, Indels: 29
0.86 0.04 0.11
Matches are distributed among these distances:
44 31 0.13
45 47 0.20
46 7 0.03
49 1 0.00
51 73 0.31
52 74 0.32
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (51 bp):
CAAGTGAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGA
Found at i:76549472 original size:52 final size:52
Alignment explanation
Indices: 76549364--76549672 Score: 382
Period size: 51 Copynumber: 6.2 Consensus size: 52
76549354 TACTTCTGAT
* *
76549364 CAAGTGAAAAGTGATAAGTGGTAGCTTTAGCTACA-TTATCTGATCAAGTGA
1 CAAGTGAAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGA
* * * *
76549415 CAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTG----A-T--
1 CAAGTGAAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGA
* *
76549460 CAAGTGAAAAGTGATAAGT-ATAGCTTCGGCTATACTTATCTGATCAAGTGA
1 CAAGTGAAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGA
76549511 C------AAAGTGATAAGTGATAGCTT-AGCTACACTTATCTGATCAAGTGA
1 CAAGTGAAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGA
* *
76549556 CAAGTGGAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
1 CAAGTGAAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGA
*
76549608 CAAGTGAAAAGTGATAAGTGATAGCTT-AGCTACACTTATCTGATCAAGAGA
1 CAAGTGAAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGA
*
76549659 CAAAGTGATAAGTG
1 C-AAGTGAAAAGTG
76549673 GCTACACTTA
Statistics
Matches: 227, Mismatches: 14, Indels: 33
0.83 0.05 0.12
Matches are distributed among these distances:
44 23 0.10
45 53 0.23
46 7 0.03
47 1 0.00
48 2 0.01
49 1 0.00
51 73 0.32
52 67 0.30
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (52 bp):
CAAGTGAAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGA
Found at i:76549568 original size:141 final size:144
Alignment explanation
Indices: 76549358--76549672 Score: 480
Period size: 141 Copynumber: 2.2 Consensus size: 144
76549348 TTTGAGTACT
*
76549358 TCTGATCAAGTGA-AAAGTGATAAGTGGTAGCTTTAGCTACATTATCTGATCAAGTGACAAGTGG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACATTATCTGATCAAGTGACAAGTGG
*
76549422 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTG-A-T-CAAGTGAAAAGTGATAAGT-ATAG
66 AAAGTGATAAGTAATAGCTTCGGCTACACTTATCTGAAGTACAAGTGAAAAGTGATAAGTGATAG
* *
76549483 CTTCGGCTATACTTA
131 CTT-AGCTACACTTA
76549498 TCTGATCAAGTGACAAAGTGATAAGTGATAGC-TTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACA-TTATCTGATCAAGTGACAAGTG
*
76549562 GAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGT
65 GAAAGTGATAAGTAATAGCTTCGGCTACACTTATCTG---AAGT-ACAAGTGAAAAGTGATAAGT
76549627 GATAGCTTAGCTACACTTA
126 GATAGCTTAGCTACACTTA
*
76549646 TCTGATCAAGAGACAAAGTGATAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTG
76549673 GCTACACTTA
Statistics
Matches: 159, Mismatches: 6, Indels: 12
0.90 0.03 0.07
Matches are distributed among these distances:
140 22 0.14
141 74 0.47
145 1 0.01
146 1 0.01
148 54 0.34
149 7 0.04
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.29
Consensus pattern (144 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACATTATCTGATCAAGTGACAAGTGG
AAAGTGATAAGTAATAGCTTCGGCTACACTTATCTGAAGTACAAGTGAAAAGTGATAAGTGATAG
CTTAGCTACACTTA
Found at i:76549680 original size:37 final size:37
Alignment explanation
Indices: 76549636--76549745 Score: 195
Period size: 37 Copynumber: 3.0 Consensus size: 37
76549626 TGATAGCTTA
76549636 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
76549673 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
76549710 GCTACACTTATCTGATCAAGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
76549746 ATCATACGTA
Statistics
Matches: 70, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
36 12 0.17
37 58 0.83
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
Found at i:76551059 original size:49 final size:48
Alignment explanation
Indices: 76550998--76551187 Score: 294
Period size: 49 Copynumber: 3.9 Consensus size: 48
76550988 ATGTGAACAT
76550998 GTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
1 GTGA-TATGTGATT-CGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
76551048 GTGATATGTGATTTCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
1 GTGATATGTGA-TTCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
*
76551097 GTGATATGTGA-TCGTGTAAGACCATAG-TGGGCTATGGCATCGGTAT
1 GTGATATGTGATTCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
* * *
76551143 GTGATTTGTGATTACGTGTAAGACCATAGTTGGACTATGGCATCG
1 GTGATATGTGATT-CGTGTAAGACCATAGCTGGGCTATGGCATCG
76551188 AGAAAACGAA
Statistics
Matches: 133, Mismatches: 3, Indels: 9
0.92 0.02 0.06
Matches are distributed among these distances:
46 28 0.21
47 17 0.13
48 15 0.11
49 67 0.50
50 6 0.05
ACGTcount: A:0.24, C:0.14, G:0.31, T:0.31
Consensus pattern (48 bp):
GTGATATGTGATTCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
Found at i:76551138 original size:95 final size:99
Alignment explanation
Indices: 76550998--76551187 Score: 307
Period size: 95 Copynumber: 2.0 Consensus size: 99
76550988 ATGTGAACAT
*
76550998 GTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATGTGATTTC
1 GTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATGTGATTAC
*
76551063 GTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
66 GTGTAAGACCATAGCTGGACTATGGCATCGGTAA
* *
76551097 GTGA-TATGTGA-T-CGTGTAAGACCATAG-TGGGCTATGGCATCGGTATGTGATTTGTGATTAC
1 GTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATGTGATTAC
*
76551158 GTGTAAGACCATAGTTGGACTATGGCATCG
66 GTGTAAGACCATAGCTGGACTATGGCATCG
76551188 AGAAAACGAA
Statistics
Matches: 86, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
95 59 0.69
96 15 0.17
97 1 0.01
98 7 0.08
99 4 0.05
ACGTcount: A:0.24, C:0.14, G:0.31, T:0.31
Consensus pattern (99 bp):
GTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATGTGATTAC
GTGTAAGACCATAGCTGGACTATGGCATCGGTAA
Found at i:76552117 original size:48 final size:48
Alignment explanation
Indices: 76552044--76552234 Score: 287
Period size: 48 Copynumber: 4.0 Consensus size: 48
76552034 TTCGTTTTCT
* *
76552044 CGATGCCATAGTCCAACTATGGTCTTACACGTAATCACAAATCACATAC
1 CGATGCCATAGCCCAGCTATGGTCTTACACG-AATCACAAATCACATAC
* *
76552093 CGATGCCATAGCCCA-CTATGGTCTTACACG-ATCACATATCACTTAC
1 CGATGCCATAGCCCAGCTATGGTCTTACACGAATCACAAATCACATAC
* *
76552139 CGATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCACTTAC
1 CGATGCCATAGCCCAGCTATGGTCTTACACGAATCACAAATCACATAC
76552187 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCACAT
1 CGATGCCATAGCCCAGCTATGGTCTTACAC-GAATCACA-AATCACAT
76552235 GTTCACATGT
Statistics
Matches: 133, Mismatches: 5, Indels: 7
0.92 0.03 0.05
Matches are distributed among these distances:
46 29 0.22
47 15 0.11
48 61 0.46
49 22 0.17
50 6 0.05
ACGTcount: A:0.31, C:0.30, G:0.14, T:0.25
Consensus pattern (48 bp):
CGATGCCATAGCCCAGCTATGGTCTTACACGAATCACAAATCACATAC
Found at i:76552161 original size:95 final size:98
Alignment explanation
Indices: 76552044--76552232 Score: 305
Period size: 95 Copynumber: 2.0 Consensus size: 98
76552034 TTCGTTTTCT
*
76552044 CGATGCCATAGTCCAACTATGGTCTTACACGTAATCACAAATCACATACCGATGCCATAGCCCA-
1 CGATGCCATAGCCCAACTATGGTCTTACACG-AATCACAAATCACATACCGATGCCATAGCCCAG
76552108 CTATGGTCTTACAC-G-ATCACAT-ATCACTTAC
65 CTATGGTCTTACACGGAATCACATAATCACTTAC
* * *
76552139 CGATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCACTTACCGATGCCATAGCCCAGC
1 CGATGCCATAGCCCAACTATGGTCTTACACGAATCACAAATCACATACCGATGCCATAGCCCAGC
76552204 TATGGTCTTACACGGAATCACATAATCAC
66 TATGGTCTTACACGGAATCACATAATCAC
76552233 ATGTTCACAT
Statistics
Matches: 86, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
94 30 0.35
95 43 0.50
96 1 0.01
97 7 0.08
98 5 0.06
ACGTcount: A:0.31, C:0.31, G:0.14, T:0.24
Consensus pattern (98 bp):
CGATGCCATAGCCCAACTATGGTCTTACACGAATCACAAATCACATACCGATGCCATAGCCCAGC
TATGGTCTTACACGGAATCACATAATCACTTAC
Found at i:76553530 original size:36 final size:37
Alignment explanation
Indices: 76553483--76553591 Score: 186
Period size: 36 Copynumber: 3.0 Consensus size: 37
76553473 TACGTATGAT
*
76553483 CACTTATCAC-TTGTCCCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
*
76553519 CACTTATCACTTTGTTTCTTGAT-AGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
76553555 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
76553592 TAAAGCTATC
Statistics
Matches: 68, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
36 45 0.66
37 23 0.34
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.38
Consensus pattern (37 bp):
CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
Found at i:76553634 original size:52 final size:52
Alignment explanation
Indices: 76553555--76553869 Score: 384
Period size: 52 Copynumber: 6.2 Consensus size: 52
76553545 TAAGTGTAGC
* * *
76553555 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTAT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTAT
*
76553608 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTAT
* *
76553660 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTAT
* * *
76553712 CAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATAACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTAT
* * *
76553758 CAC-TTT-A----TCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTAT
* * * *
76553804 CACTTTCCACTTGTCACTTGATCAGATAACTGTAGCTAAAGCTACCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTAT
76553856 CACTTTATCACTTG
1 CACTTT-TCACTTG
76553870 ATCAGAAGTA
Statistics
Matches: 231, Mismatches: 21, Indels: 20
0.85 0.08 0.07
Matches are distributed among these distances:
46 82 0.35
47 2 0.01
48 2 0.01
52 130 0.56
53 15 0.06
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.35
Consensus pattern (52 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTAT
Found at i:76553665 original size:98 final size:98
Alignment explanation
Indices: 76553555--76553875 Score: 429
Period size: 98 Copynumber: 3.3 Consensus size: 98
76553545 TAAGTGTAGC
* *
76553555 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTCACTT
1 CACTTATCACTTTATCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTCACTT
76553620 GTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
66 GTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
76553653 CACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCAC---
1 CACTTATCACTTT--A----TCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTT
*
76553715 T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
60 TCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* * ** * *
76553751 AACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTT
1 CACTTATCACTTTATCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTCACTT
* ** *
76553816 GTCACTTGATCAGATAACTGTAGCTAAAGCTAC
66 GTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
76553849 CACTTATCACTTTATCACTTGATCAGA
1 CACTTATCACTTTATCACTTGATCAGA
76553876 AGTACTCAAA
Statistics
Matches: 196, Mismatches: 15, Indels: 24
0.83 0.06 0.10
Matches are distributed among these distances:
92 38 0.19
96 1 0.01
98 115 0.59
101 1 0.01
104 41 0.21
ACGTcount: A:0.30, C:0.22, G:0.13, T:0.35
Consensus pattern (98 bp):
CACTTATCACTTTATCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTCACTT
GTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:76556466 original size:20 final size:21
Alignment explanation
Indices: 76556441--76556482 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
76556431 ATCGATATTT
*
76556441 AACCA-TCAAATTACTTTAAA
1 AACCATTCAAATCACTTTAAA
*
76556461 AACCATTTAAATCACTTTAAA
1 AACCATTCAAATCACTTTAAA
76556482 A
1 A
76556483 CAATTTAGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.50, C:0.19, G:0.00, T:0.31
Consensus pattern (21 bp):
AACCATTCAAATCACTTTAAA
Found at i:76556483 original size:20 final size:21
Alignment explanation
Indices: 76556448--76556489 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
76556438 TTTAACCATC
* *
76556448 AAATTACTTTAAAAACCATTT
1 AAATCACTTTAAAAACAATTT
76556469 AAATCACTTT-AAAACAATTT
1 AAATCACTTTAAAAACAATTT
76556489 A
1 A
76556490 GAATTGACTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (21 bp):
AAATCACTTTAAAAACAATTT
Found at i:76559267 original size:76 final size:76
Alignment explanation
Indices: 76559135--76559287 Score: 263
Period size: 76 Copynumber: 2.0 Consensus size: 76
76559125 AGGTAAATTC
*
76559135 TCTCCTCCATGTTAAACTTTTTCTAGTCCATAGTATTACACTCTTTCTTTCACCTGCCCTGTACT
1 TCTCCTCCATGTTAAACTTTTTCTAGTCCATAGTATTACACTCTTTCTATCACCTGCCCTGTACT
76559200 ATGCGATGCGG
66 ATGCGATGCGG
* *
76559211 TCTCCTCCATGTTAAAC-TTTTCTAGTCCATAGTATTACACTCTTTTCTATCGCCTGCTCTGTAC
1 TCTCCTCCATGTTAAACTTTTTCTAGTCCATAGTATTACACTC-TTTCTATCACCTGCCCTGTAC
76559275 TATGCGATGCGG
65 TATGCGATGCGG
76559287 T
1 T
76559288 TCAATATATA
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
75 25 0.34
76 48 0.66
ACGTcount: A:0.18, C:0.28, G:0.14, T:0.40
Consensus pattern (76 bp):
TCTCCTCCATGTTAAACTTTTTCTAGTCCATAGTATTACACTCTTTCTATCACCTGCCCTGTACT
ATGCGATGCGG
Found at i:76560515 original size:16 final size:14
Alignment explanation
Indices: 76560482--76560516 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
76560472 GAAAAGACTT
*
76560482 AAAAGAAGAGAAAA
1 AAAAAAAGAGAAAA
76560496 AAAAAAAGAGAAAA
1 AAAAAAAGAGAAAA
76560510 AGAAAAA
1 A-AAAAA
76560517 CTTGACAGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 14 0.74
15 5 0.26
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (14 bp):
AAAAAAAGAGAAAA
Found at i:76560805 original size:92 final size:92
Alignment explanation
Indices: 76560624--76560790 Score: 198
Period size: 92 Copynumber: 1.8 Consensus size: 92
76560614 ACAATTTCGA
* * * *
76560624 CCATTTAAACCTTCTTTAATTTCCCCTTTCATTGCGGAGTCAATTTTCAATCTCTTCTTTATTGG
1 CCATTTAAACCTTCTTTAATTTCCCCTTTCATTGCAGAGCCAATATTCAATCTCTTCTTGATTGG
** *
76560689 AATTTGGAACCTGTTGCATAATTTTGG
66 AATTTGGAAAATGGTGCATAATTTTGG
* *
76560716 CCATTTAAACCCTT-TTTAATTTCCCCTTTTATTG-AG-GCCAATATTCAATCTTTTCCTTGATT
1 CCATTTAAA-CCTTCTTTAATTTCCCCTTTCATTGCAGAGCCAATATTCAATCTCTT-CTTGATT
*
76560778 GG-ATTTTGAAAAT
64 GGAATTTGGAAAAT
76560791 AGGTCATTAT
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
90 23 0.36
91 9 0.14
92 28 0.44
93 4 0.06
ACGTcount: A:0.23, C:0.20, G:0.11, T:0.45
Consensus pattern (92 bp):
CCATTTAAACCTTCTTTAATTTCCCCTTTCATTGCAGAGCCAATATTCAATCTCTTCTTGATTGG
AATTTGGAAAATGGTGCATAATTTTGG
Found at i:76566199 original size:22 final size:23
Alignment explanation
Indices: 76566158--76566201 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
76566148 TTAATAAATG
*
76566158 ATAAAATTATATTTTAAATTTTT
1 ATAAAATTATATATTAAATTTTT
76566181 ATAAAATTATA-ATTAAATTTT
1 ATAAAATTATATATTAAATTTT
76566202 GGCCTCGAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (23 bp):
ATAAAATTATATATTAAATTTTT
Found at i:76579720 original size:12 final size:12
Alignment explanation
Indices: 76579705--76579746 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
76579695 TTAATAATAC
76579705 TACATAAATATA
1 TACATAAATATA
*
76579717 TACACAAATATA
1 TACATAAATATA
*
76579729 TTA-AAAAATATA
1 -TACATAAATATA
76579741 TACATA
1 TACATA
76579747 TATCATATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
11 2 0.08
12 21 0.84
13 2 0.08
ACGTcount: A:0.60, C:0.10, G:0.00, T:0.31
Consensus pattern (12 bp):
TACATAAATATA
Found at i:76579767 original size:27 final size:24
Alignment explanation
Indices: 76579710--76579774 Score: 85
Period size: 24 Copynumber: 2.6 Consensus size: 24
76579700 AATACTACAT
*
76579710 AAATATATACACAAATATATTAAA
1 AAATATATACATAAATATATTAAA
*
76579734 AAATATATACATATATCATATTAAA
1 AAATATATACATAAAT-ATATTAAA
76579759 AAGAGTATATACATAA
1 AA-A-TATATACATAA
76579775 TAAATATAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
24 14 0.40
25 10 0.29
26 1 0.03
27 10 0.29
ACGTcount: A:0.58, C:0.08, G:0.03, T:0.31
Consensus pattern (24 bp):
AAATATATACATAAATATATTAAA
Found at i:76579781 original size:27 final size:25
Alignment explanation
Indices: 76579710--76579786 Score: 79
Period size: 24 Copynumber: 3.1 Consensus size: 25
76579700 AATACTACAT
* *
76579710 AAATATATACACAA-ATATATTAAA
1 AAATATATACATAATAAATATTAAA
*
76579734 AAATATATACAT-ATATCATATTAAA
1 AAATATATACATAATA-AATATTAAA
76579759 AAGAGTATATACATAATAAATA-TAAA
1 AA-A-TATATACATAATAAATATTAAA
76579785 AA
1 AA
76579787 CATAATGTGG
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
23 1 0.02
24 12 0.27
25 10 0.22
26 7 0.16
27 12 0.27
28 3 0.07
ACGTcount: A:0.61, C:0.06, G:0.03, T:0.30
Consensus pattern (25 bp):
AAATATATACATAATAAATATTAAA
Found at i:76580587 original size:22 final size:22
Alignment explanation
Indices: 76580559--76580601 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
76580549 ATAATATTAG
76580559 AATAATAAT-GACAATATTTAAC
1 AATAATAATAG-CAATATTTAAC
76580581 AATAATAATAGCAATATTTAA
1 AATAATAATAGCAATATTTAA
76580602 TAATGGAACA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 19 0.95
23 1 0.05
ACGTcount: A:0.56, C:0.07, G:0.05, T:0.33
Consensus pattern (22 bp):
AATAATAATAGCAATATTTAAC
Found at i:76581205 original size:12 final size:13
Alignment explanation
Indices: 76581166--76581209 Score: 54
Period size: 15 Copynumber: 3.3 Consensus size: 13
76581156 TTTTTCTCTC
*
76581166 TTTTTTTATTGTT
1 TTTTTTTATTATT
76581179 GTTTATTTTATTATT
1 -TTT-TTTTATTATT
76581194 TTTTTTTA-TATT
1 TTTTTTTATTATT
76581206 TTTT
1 TTTT
76581210 AGCTTAATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
12 8 0.29
13 5 0.18
14 6 0.21
15 9 0.32
ACGTcount: A:0.14, C:0.00, G:0.05, T:0.82
Consensus pattern (13 bp):
TTTTTTTATTATT
Found at i:76581519 original size:19 final size:20
Alignment explanation
Indices: 76581482--76581520 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
76581472 TGCAAGTAGT
*
76581482 GGTTGAACGGTGGGAATGGG
1 GGTTGAACGGAGGGAATGGG
*
76581502 GGTTG-ACGGAGGGGATGGG
1 GGTTGAACGGAGGGAATGGG
76581521 ACAGAAGCGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.18, C:0.05, G:0.59, T:0.18
Consensus pattern (20 bp):
GGTTGAACGGAGGGAATGGG
Found at i:76581775 original size:44 final size:45
Alignment explanation
Indices: 76581727--76581832 Score: 146
Period size: 43 Copynumber: 2.4 Consensus size: 45
76581717 GATGTAAACG
*
76581727 GGTTTTGGG-GTTAGGGTTGGCTAATGCTTTTAGTGGGCCATTCA
1 GGTTTTGGGTATTAGGGTTGGCTAATGCTTTTAGTGGGCCATTCA
* * **
76581771 GGTTTTGGGTATTAGGG--GGTTGATGCTTTTAGTGGGCCATTTG
1 GGTTTTGGGTATTAGGGTTGGCTAATGCTTTTAGTGGGCCATTCA
76581814 GGTTTTGGGTATTAGGGTT
1 GGTTTTGGGTATTAGGGTT
76581833 ATTGTTTGGG
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
43 39 0.72
44 9 0.17
45 6 0.11
ACGTcount: A:0.12, C:0.08, G:0.39, T:0.42
Consensus pattern (45 bp):
GGTTTTGGGTATTAGGGTTGGCTAATGCTTTTAGTGGGCCATTCA
Found at i:76587907 original size:17 final size:18
Alignment explanation
Indices: 76587881--76587923 Score: 56
Period size: 17 Copynumber: 2.5 Consensus size: 18
76587871 GGTCCCAAAA
76587881 TTAT-TATTTTATA-TTTT
1 TTATATATTTTA-ACTTTT
76587898 TTA-ATATTTTAACTTTT
1 TTATATATTTTAACTTTT
76587915 TTATATATT
1 TTATATATT
76587924 CTTGAGAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
16 1 0.04
17 17 0.74
18 5 0.22
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (18 bp):
TTATATATTTTAACTTTT
Found at i:76587982 original size:20 final size:20
Alignment explanation
Indices: 76587940--76587980 Score: 66
Period size: 19 Copynumber: 2.1 Consensus size: 20
76587930 AATATTTTGG
76587940 AATTTTTAATATATATTTAA
1 AATTTTTAATATATATTTAA
*
76587960 AATTTTT-ATATATTTTTAA
1 AATTTTTAATATATATTTAA
76587979 AA
1 AA
76587981 ATATATAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 13 0.65
20 7 0.35
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (20 bp):
AATTTTTAATATATATTTAA
Found at i:76595082 original size:20 final size:19
Alignment explanation
Indices: 76595043--76595098 Score: 60
Period size: 19 Copynumber: 2.8 Consensus size: 19
76595033 GTTCCCCCAA
*
76595043 AAAAACATAATGAAAA-TAG
1 AAAAACAT-ATAAAAATTAG
*
76595062 AAAATCATGATAAAAATTAG
1 AAAAACAT-ATAAAAATTAG
76595082 AAAAACATATAATAAAT
1 AAAAACATATAA-AAAT
76595099 AATTCCAAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
19 17 0.55
20 14 0.45
ACGTcount: A:0.66, C:0.05, G:0.07, T:0.21
Consensus pattern (19 bp):
AAAAACATATAAAAATTAG
Found at i:76598896 original size:28 final size:28
Alignment explanation
Indices: 76598857--76598910 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
76598847 TTAAGATTTG
* *
76598857 AAATTTGAGGTTTAAGGTTTAAAGTTTC
1 AAATTTGAGGTTCAAGATTTAAAGTTTC
*
76598885 AAATTT-ATGGTTCAAGATTTAGAGTT
1 AAATTTGA-GGTTCAAGATTTAAAGTT
76598911 AAGATTTGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 1 0.05
28 21 0.95
ACGTcount: A:0.33, C:0.04, G:0.20, T:0.43
Consensus pattern (28 bp):
AAATTTGAGGTTCAAGATTTAAAGTTTC
Found at i:76599499 original size:18 final size:18
Alignment explanation
Indices: 76599459--76599500 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
76599449 ATTTCAGTAG
76599459 AATTATGCATTATAAATT
1 AATTATGCATTATAAATT
* *
76599477 GATTATG-ATTATAATTAT
1 AATTATGCATTATAAAT-T
76599495 AATTAT
1 AATTAT
76599501 TCAAATATAC
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.48
Consensus pattern (18 bp):
AATTATGCATTATAAATT
Found at i:76600484 original size:17 final size:17
Alignment explanation
Indices: 76600452--76600484 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
76600442 AATAAAGCTA
76600452 TACTAAATATATAATAC
1 TACTAAATATATAATAC
76600469 TACTATAATATA-AATA
1 TACTA-AATATATAATA
76600485 TTAAAATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.55, C:0.09, G:0.00, T:0.36
Consensus pattern (17 bp):
TACTAAATATATAATAC
Found at i:76601123 original size:22 final size:22
Alignment explanation
Indices: 76601098--76601151 Score: 58
Period size: 21 Copynumber: 2.5 Consensus size: 22
76601088 ATTACGGAAT
76601098 ATAATTATTTTGTTTGATAAAA-
1 ATAATTATTTTGTTT-ATAAAAG
* *
76601120 ATAAATA-TTTGTTTTTAAAAG
1 ATAATTATTTTGTTTATAAAAG
*
76601141 ATTATTATTTT
1 ATAATTATTTT
76601152 TTAATTTTAG
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
20 5 0.19
21 12 0.46
22 9 0.35
ACGTcount: A:0.39, C:0.00, G:0.07, T:0.54
Consensus pattern (22 bp):
ATAATTATTTTGTTTATAAAAG
Found at i:76608858 original size:26 final size:26
Alignment explanation
Indices: 76608829--76608880 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
76608819 TCAAACATGC
76608829 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGT-AATTTAACTCCTAGGGGT
* * *
76608855 ATTTCGGTAGTTTATCTCCTAGGGGT
1 ATTTAGGTAATTTAACTCCTAGGGGT
76608881 CAAACTATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 6 0.27
26 16 0.73
ACGTcount: A:0.21, C:0.15, G:0.25, T:0.38
Consensus pattern (26 bp):
ATTTAGGTAATTTAACTCCTAGGGGT
Found at i:76610400 original size:32 final size:32
Alignment explanation
Indices: 76610363--76610427 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
76610353 AATGCTTACC
76610363 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
*
76610395 ATGCCCATCATCCATTAGCTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
76610427 A
1 A
76610428 AATGCATACA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.37, C:0.25, G:0.08, T:0.31
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:76615234 original size:12 final size:12
Alignment explanation
Indices: 76615214--76615256 Score: 68
Period size: 12 Copynumber: 3.6 Consensus size: 12
76615204 AGTACTACCT
76615214 CGGCCTCGACCA
1 CGGCCTCGACCA
*
76615226 CGGCTTCGACCA
1 CGGCCTCGACCA
*
76615238 CGGCCTCGAGCA
1 CGGCCTCGACCA
76615250 CGGCCTC
1 CGGCCTC
76615257 TTCTCCGAGT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.14, C:0.47, G:0.28, T:0.12
Consensus pattern (12 bp):
CGGCCTCGACCA
Found at i:76616885 original size:25 final size:27
Alignment explanation
Indices: 76616848--76616898 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
76616838 TCAAACATGC
76616848 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
76616874 ATTTCGGT-AATTTATCTCCTAGGGG
1 ATTTAGGTCAATTTAACTCCTAGGGG
76616899 GTAAAACTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 7 0.32
26 15 0.68
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.37
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:76618419 original size:32 final size:32
Alignment explanation
Indices: 76618382--76618446 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
76618372 AATGCTTACC
76618382 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
76618414 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
76618446 A
1 A
76618447 AATGCATACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.38, C:0.25, G:0.06, T:0.31
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:76620407 original size:45 final size:45
Alignment explanation
Indices: 76620356--76620472 Score: 153
Period size: 45 Copynumber: 2.6 Consensus size: 45
76620346 TATTTGAAAA
* * **
76620356 ATTTGCTGTGTGTCCACAACCAGAGGCAAATTCCATGTGTGGGTT
1 ATTTGCTGTGTATCCACAACCAGAGGCAAATTCCATGTGCGAATT
* *
76620401 ATTTGCTGTGTATCCATAGCCAGAGGCAAATTCCATGTGCGAATT
1 ATTTGCTGTGTATCCACAACCAGAGGCAAATTCCATGTGCGAATT
* *
76620446 ATTTGCTATGTAATCCACAACTAGAGG
1 ATTTGCTGTGT-ATCCACAACCAGAGG
76620473 TAGATTTCAT
Statistics
Matches: 61, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
45 49 0.80
46 12 0.20
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (45 bp):
ATTTGCTGTGTATCCACAACCAGAGGCAAATTCCATGTGCGAATT
Found at i:76620827 original size:15 final size:15
Alignment explanation
Indices: 76620807--76620845 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
76620797 TTGCAATTTA
*
76620807 TTTTGTGTGACATAT
1 TTTTGTATGACATAT
*
76620822 TTTTGTATGACATTT
1 TTTTGTATGACATAT
76620837 TTTTGTATG
1 TTTTGTATG
76620846 CTTAATCATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.18, C:0.05, G:0.18, T:0.59
Consensus pattern (15 bp):
TTTTGTATGACATAT
Done.