Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 233 of 255
Found at i:76862893 original size:41 final size:43
Alignment explanation
Indices: 76862817--76862903 Score: 133
Period size: 41 Copynumber: 2.1 Consensus size: 43
76862807 GTTATATGAC
* *
76862817 TTTTAGCGGCGTTTTGACCACAAACGCCACTATTGCTCT-GTT
1 TTTTAGCGACGTTTTGACCAAAAACGCCACTATTGCTCTAGTT
*
76862859 TTTTAGCGACGTTTT-ACCAAAAACGCCGCTATTGCTCTAGTT
1 TTTTAGCGACGTTTTGACCAAAAACGCCACTATTGCTCTAGTT
76862901 TTT
1 TTT
76862904 AGTGGAACGC
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
41 21 0.51
42 20 0.49
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.38
Consensus pattern (43 bp):
TTTTAGCGACGTTTTGACCAAAAACGCCACTATTGCTCTAGTT
Found at i:76862920 original size:70 final size:66
Alignment explanation
Indices: 76862839--76862971 Score: 203
Period size: 70 Copynumber: 2.0 Consensus size: 66
76862829 TTTGACCACA
*
76862839 AACGCCACTATTGCTCTGTTTTTTAGCGACGTTTTACCAAAAACGCCGCTATTGCTCTAGTTTTT
1 AACGCCACTATTGCTCTGTTTTTAAG-G-CGTTTTACCAAAAACGCCGC-ATTGCTCT-GTTTTT
76862904 AGTGG
62 AGTGG
* *
76862909 AACGCCGCTATTGCTCTGTTTTTAAGGCGTTTTACCAAAAACGCCGCATTGTTCTGTTTTTAG
1 AACGCCACTATTGCTCTGTTTTTAAGGCGTTTTACCAAAAACGCCGCATTGCTCTGTTTTTAG
76862972 CGGCGTTTTT
Statistics
Matches: 60, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
66 8 0.13
67 7 0.12
68 20 0.33
69 1 0.02
70 24 0.40
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.38
Consensus pattern (66 bp):
AACGCCACTATTGCTCTGTTTTTAAGGCGTTTTACCAAAAACGCCGCATTGCTCTGTTTTTAGTG
G
Found at i:76862991 original size:23 final size:23
Alignment explanation
Indices: 76862961--76863005 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
76862951 GCCGCATTGT
76862961 TCTGTTTTTAGCGGCGTTTTTGG
1 TCTGTTTTTAGCGGCGTTTTTGG
*
76862984 TCTGTTTTTAGTGGCGTTTTTG
1 TCTGTTTTTAGCGGCGTTTTTG
76863006 CTAAAACGCC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.04, C:0.11, G:0.29, T:0.56
Consensus pattern (23 bp):
TCTGTTTTTAGCGGCGTTTTTGG
Found at i:76863338 original size:8 final size:8
Alignment explanation
Indices: 76863325--76863350 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
76863315 AATGGATTCG
76863325 CCAAGCTA
1 CCAAGCTA
76863333 CCAAGCTA
1 CCAAGCTA
76863341 CCAAGCTA
1 CCAAGCTA
76863349 CC
1 CC
76863351 TCATTCTTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.35, C:0.42, G:0.12, T:0.12
Consensus pattern (8 bp):
CCAAGCTA
Found at i:76868800 original size:40 final size:40
Alignment explanation
Indices: 76868754--76868830 Score: 118
Period size: 40 Copynumber: 1.9 Consensus size: 40
76868744 ACACACCTTG
* * *
76868754 TGGGGATAGAATCGACCCACCCAGCCCTACACACCAAGTA
1 TGGGGATAAAATCAACCCACCCAACCCTACACACCAAGTA
*
76868794 TGGGGATAAAATCAACCCATCCAACCCTACACACCAA
1 TGGGGATAAAATCAACCCACCCAACCCTACACACCAA
76868831 ATGGTATCGT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.36, C:0.35, G:0.16, T:0.13
Consensus pattern (40 bp):
TGGGGATAAAATCAACCCACCCAACCCTACACACCAAGTA
Found at i:76869386 original size:19 final size:19
Alignment explanation
Indices: 76869351--76869388 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
76869341 GTGTGGGTCG
*
76869351 TATGAGCCCATTGGGCCCA
1 TATGAGCCCATTAGGCCCA
76869370 TATG-GCCCATCTAGGCCCA
1 TATGAGCCCAT-TAGGCCCA
76869389 ACGTGGCCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.21, C:0.34, G:0.24, T:0.21
Consensus pattern (19 bp):
TATGAGCCCATTAGGCCCA
Found at i:76872488 original size:24 final size:24
Alignment explanation
Indices: 76872461--76872515 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
76872451 TGTTTTAATG
* * *
76872461 ATTTATTCATTTTTTATGTTATTT
1 ATTTATTCATTGTTCATATTATTT
* *
76872485 ATTTGTTTATTGTTCATATTATTT
1 ATTTATTCATTGTTCATATTATTT
76872509 ATTTATT
1 ATTTATT
76872516 ACTTCTACTT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.22, C:0.04, G:0.05, T:0.69
Consensus pattern (24 bp):
ATTTATTCATTGTTCATATTATTT
Found at i:76872506 original size:20 final size:18
Alignment explanation
Indices: 76872464--76872515 Score: 54
Period size: 20 Copynumber: 2.8 Consensus size: 18
76872454 TTTAATGATT
76872464 TATTCATTTTTTA-TGTTA
1 TATT-ATTTTTTATTGTTA
76872482 T-TTATTTGTTTATTGTTCA
1 TATTATTT-TTTATTGTT-A
76872501 TATTATTTATTTATT
1 TATTATTT-TTTATT
76872516 ACTTCTACTT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
16 4 0.14
17 6 0.21
18 5 0.17
19 2 0.07
20 12 0.41
ACGTcount: A:0.21, C:0.04, G:0.06, T:0.69
Consensus pattern (18 bp):
TATTATTTTTTATTGTTA
Found at i:76891823 original size:15 final size:15
Alignment explanation
Indices: 76891805--76891835 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
76891795 GCACGAGGAC
76891805 CCACCGACTCAGCCA
1 CCACCGACTCAGCCA
76891820 CCACCGACTCAGCCA
1 CCACCGACTCAGCCA
76891835 C
1 C
76891836 TACCACCCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.55, G:0.13, T:0.06
Consensus pattern (15 bp):
CCACCGACTCAGCCA
Found at i:76894010 original size:52 final size:51
Alignment explanation
Indices: 76893914--76894015 Score: 123
Period size: 52 Copynumber: 2.0 Consensus size: 51
76893904 CCTAGACTTC
** * * *
76893914 CTCACACGGGTAGCCCACACGGCCATGTCAATCTAGCAGAATCGAAGCACGA
1 CTCACACGGGTAGAACACACGCCCATGCCAATCTAACAGAATCGAA-CACGA
* * *
76893966 CTCACACGGGTAGAACACACGCCCGTGCCATTCTAACAGGATCGAACACG
1 CTCACACGGGTAGAACACACGCCCATGCCAATCTAACAGAATCGAACACG
76894016 GCCTGAAATA
Statistics
Matches: 42, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
51 4 0.10
52 38 0.90
ACGTcount: A:0.30, C:0.33, G:0.23, T:0.14
Consensus pattern (51 bp):
CTCACACGGGTAGAACACACGCCCATGCCAATCTAACAGAATCGAACACGA
Found at i:76897189 original size:30 final size:30
Alignment explanation
Indices: 76897155--76897215 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
76897145 TCCTTAACTC
76897155 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
76897185 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
76897215 A
1 A
76897216 CGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:76903555 original size:89 final size:89
Alignment explanation
Indices: 76903446--76904051 Score: 350
Period size: 89 Copynumber: 6.8 Consensus size: 89
76903436 CGTGGCGAAT
* * *
76903446 CTTATCTCTTTGAAGTTGCAGTGGAGCAGATCGAAAATATCAAATCTTATCTCTCTGAAGTTACA
1 CTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAAATATCAAATCTTATCTCCCTGAAGTTACA
* *
76903511 ATAGAGCAAATTAAACCTATAAAC
66 GTAGAGCAAATTAAAGCTATAAAC
* * * ** * * *
76903535 CTTATCTCCCTGAAGTTGCAGTAGG-GCTGGTTGAAGTTA-CAAGTCTTATATCCCTGAAGTTAT
1 CTTATCTCCTTGAAGTTGCAGT-GGAGCAGATTGAAAATATCAAATCTTATCTCCCTGAAGTTAC
* * * * * *
76903598 AGTAGAGCAAACTGAGGATAGTGAAT
65 AGTAGAGCAAATTAAAGCTA-TAAAC
* * * * * * *
76903624 CTTATTTCCTTGAGGTTGCAATGTAACAGATT-AAAAT-TACAAATCTGATCTCCCTGAAGTTGC
1 CTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAAATAT-CAAATCTTATCTCCCTGAAGTTAC
* * * * *
76903687 AGTGGAGCAAATTGAAGTTATAGAT
65 AGTAGAGCAAATTAAAGCTATAAAC
** * * * * ** **
76903712 CTGCTCTCCTTAAAGTTGCAGTGGAGTAGATTGAGAATAGCAAATCTTATCTCTTTGAAGTTGTA
1 CTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAAATATCAAATCTTATCTCCCTGAAGTTACA
* *
76903777 GTAGAGCAGATAAAAGCTATAAAC
66 GTAGAGCAAATTAAAGCTATAAAC
* ** * *
76903801 CTTATCTTCC-TGAAGTTACAGTGGAGCATG-TTGAAGTTA-CAAGTCTTA-CTTCCGTGAAGTT
1 CTTATC-TCCTTGAAGTTGCAGTGGAGCA-GATTGAAAATATCAAATCTTATC-TCCCTGAAGTT
* * * * * * * *
76903862 GCAGTGGAGTAGATTGAAGATAGTGAAT
63 ACAGTAGAGCAAATTAAAGCTA-TAAAC
* * * * * * * *
76903890 CTTATCTCCTTGAAGTTGCAATGGAGTAGATTGAATATAGCGAATATTATCTCTCTGAAGTTGCA
1 CTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAAATATCAAATCTTATCTCCCTGAAGTTACA
* * *
76903955 GTGGAACAAATTAAAGCTACAAATTACAAAT
66 GTAGAGCAAATTAAAGCT----A-T--AAAC
* ** ** *
76903986 CTTATCTCCTTAAAGTTGCAGAT-GAGCAGATTGAAACCA-CAAATCTTATCTTTCTGAAGTTGC
1 CTTATCTCCTTGAAGTTGCAG-TGGAGCAGATTGAAAATATCAAATCTTATCTCCCTGAAGTTAC
76904049 AGT
65 AGT
76904052 GAAGAAGATT
Statistics
Matches: 388, Mismatches: 107, Indels: 38
0.73 0.20 0.07
Matches are distributed among these distances:
87 1 0.00
88 101 0.26
89 187 0.48
90 37 0.10
91 1 0.00
94 2 0.01
95 24 0.06
96 34 0.09
97 1 0.00
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.32
Consensus pattern (89 bp):
CTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAAATATCAAATCTTATCTCCCTGAAGTTACA
GTAGAGCAAATTAAAGCTATAAAC
Found at i:76903702 original size:133 final size:132
Alignment explanation
Indices: 76903456--76903976 Score: 385
Period size: 133 Copynumber: 3.9 Consensus size: 132
76903446 CTTATCTCTT
* * ** * * *
76903456 TGAAGTTGCAGTGGAGCAGATCGAAAATA-TCAAATCTTATCT-CTCTGAAGTTACAATAG-AGC
1 TGAAGTTGCAGTGGAGTAGATTGAGGATAGT-GAATCTTATCTCCT-TGAAGTTGCAAT-GTAAC
* ** * * ***
76903518 AAATTAAACCTATAAACCTTATCTCCCTGAAGTTGCAGTAGG-GCTGGTTGAAGTTACAAGTCTT
63 AGATTAAAATTACAAATCTTATCTCCCTGAAGTTGCAGT-GGAGCAAATTGAAGTTACAAGTCTT
76903582 ATATCCC
127 AT-TCCC
** * * * * * *
76903589 TGAAGTTATAGTAGAGCAAACTGAGGATAGTGAATCTTATTTCCTTGAGGTTGCAATGTAACAGA
1 TGAAGTTGCAGTGGAGTAGATTGAGGATAGTGAATCTTATCTCCTTGAAGTTGCAATGTAACAGA
* * **
76903654 TTAAAATTACAAATCTGATCTCCCTGAAGTTGCAGTGGAGCAAATTGAAGTTA-TAGATCTGCTC
66 TTAAAATTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTGAAGTTACAAG-TCTTAT-
*
76903718 TCCT
129 TCCC
* * ** * *
76903722 TAAAGTTGCAGTGGAGTAGATTGAGAATAGCAAATCTTATCTCTTTGAAGTTG-TA-GTAGAGCA
1 TGAAGTTGCAGTGGAGTAGATTGAGGATAGTGAATCTTATCTCCTTGAAGTTGCAATGTA-A-CA
* * * * * **
76903785 GA-TAAAAGCTATAAACCTTATCTTCCTGAAGTTACAGTGGAGCATGTTGAAGTTACAAGTCTTA
64 GATTAAAA-TTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTGAAGTTACAAGTCTTA
*
76903849 CTTCCG
128 -TTCCC
* * **
76903855 TGAAGTTGCAGTGGAGTAGATTGAAGATAGTGAATCTTATCTCCTTGAAGTTGCAATGGAGTAGA
1 TGAAGTTGCAGTGGAGTAGATTGAGGATAGTGAATCTTATCTCCTTGAAGTTGCAATGTAACAGA
* * * * * * *
76903920 TT-GAATATAGCGAATATTATCTCTCTGAAGTTGCAGTGGAACAAATTAAAGCTACAA
66 TTAAAAT-TA-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTGAAGTTACAA
76903977 ATTACAAATC
Statistics
Matches: 296, Mismatches: 77, Indels: 29
0.74 0.19 0.07
Matches are distributed among these distances:
131 3 0.01
132 12 0.04
133 236 0.80
134 43 0.15
135 2 0.01
ACGTcount: A:0.33, C:0.15, G:0.21, T:0.31
Consensus pattern (132 bp):
TGAAGTTGCAGTGGAGTAGATTGAGGATAGTGAATCTTATCTCCTTGAAGTTGCAATGTAACAGA
TTAAAATTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTGAAGTTACAAGTCTTATTC
CC
Found at i:76903879 original size:44 final size:45
Alignment explanation
Indices: 76903443--76904601 Score: 356
Period size: 44 Copynumber: 25.6 Consensus size: 45
76903433 AATCGTGGCG
* * *
76903443 AATCTTA-TCTCTTTGAAGTTGCAGTGGAGCAGATCGAAAATATCA
1 AATCTTACTCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGATA-CA
* * * * * ** *
76903488 AATCTTA-TCT-CTCTGAAGTTACAATAGAGCAAATTAAACCTATA
1 AATCTTACTCTCCT-TGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * * * *
76903532 AACCTTA-TCTCCCTGAAGTTGCAGTAGG-GCTGGTTGAAGTTACA
1 AATCTTACTCTCCTTGAAGTTGCAGT-GGAGCAGATTGAAGATACA
* * * ** * * * * **
76903576 AGTCTTA-TATCCCTGAAGTTATAGTAGAGCAAACTGAGGATAGTG
1 AATCTTACTCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGATA-CA
* * * * * *
76903621 AATCTTA-TTTCCTTGAGGTTGCAATGTAACAGATT-AAAATTACA
1 AATCTTACTCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGA-TACA
* * * * *
76903665 AATCTGA-TCTCCCTGAAGTTGCAGTGGAGCAAATTGAAGTTATA
1 AATCTTACTCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * * *
76903709 GATC-TGCTCTCCTTAAAGTTGCAGTGGAGTAGATTG-AGAATAGCA
1 AATCTTACTCTCCTTGAAGTTGCAGTGGAGCAGATTGAAG-ATA-CA
* * * ** * *
76903754 AATCTTA-TCTCTTTGAAGTTGTAGTAGAGCAGATAAAAGCTATA
1 AATCTTACTCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * *
76903798 AACCTTA-TCTTCC-TGAAGTTACAGTGGAGCATG-TTGAAGTTACA
1 AATCTTACTC-TCCTTGAAGTTGCAGTGGAGCA-GATTGAAGATACA
* * * **
76903842 AGTCTTACT-TCCGTGAAGTTGCAGTGGAGTAGATTGAAGATAGTG
1 AATCTTACTCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGATA-CA
* * * *
76903887 AATCTTA-TCTCCTTGAAGTTGCAATGGAGTAGATTGAATATAGCG
1 AATCTTACTCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGATA-CA
* * * *
76903932 AATATTA-TCT-CTCTGAAGTTGCAGTGGAACAAATTAAAGCTACAAATTACA
1 AATCTTACTCTCCT-TGAAGTTGCAGTGGAGCAGATT---G--A-AGA-TACA
* *
76903983 AATCTTA-TCTCCTTAAAGTTGCAGAT-GAGCAGATTGAA-ACCACA
1 AATCTTACTCTCCTTGAAGTTGCAG-TGGAGCAGATTGAAGA-TACA
* * * *
76904027 AATCTTA-TCT-TTCTGAAGTTGCAGTGAAGAAGATTGAAGATACG
1 AATCTTACTCTCCT-TGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * * * ** *
76904071 AGTCTTA-TCT-CTCTAAAGTTGCAATGGAATAGACTAAAGCTACAAGCTACA
1 AATCTTACTCTCCT-TGAAGTTGCAGTGG---AG-C---AGATTGAAGATACA
* * * * * * *
76904122 AATTTTA-TCTCCCTAAAGTTACAGTGGAGCAGATTGAAAATGCT
1 AATCTTACTCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * ** * *
76904166 AATCTTA-TTTCCCTGAAGTTGCAGTGGAATAGATTAAAGCTACAA
1 AATCTTACTCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGATAC-A
* * * * *
76904211 GTTATGAGTCTTATTC-CCCTAAAGTTGCAGTGG-G-ATGGATTGACATCATTATGGGA
1 ---A--A-TCTTACTCTCCTTGAAGTTGCAGTGGAGCA--GATTGA-A-GA-TA---CA
* * * ** *
76904267 AATCTTA-TCTCCCTAAAGTTGCAGTAGAGCAGATTGAAGCCACT
1 AATCTTACTCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * **
76904311 AATCTTA-TCT-CTCTGAAGTTGCAGTGGAGCTGATTAAAGCCACA
1 AATCTTACTCTCCT-TGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * ** * **
76904355 GATCTTA-TCTCCCTGAAGTTATAGTGGAGTAGATTGAAGCCACA
1 AATCTTACTCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * * *
76904399 AATGTTA-TCTCCCTGAAGTTGCAGTGGAGTAGATTGAAAATAGCA
1 AATCTTACTCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGATA-CA
* * ** * * *
76904444 AATTTTA-TCACCTTGAAGTTGCAGTGGAATAGATTAAAGCTATA
1 AATCTTACTCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * *
76904488 AACCTTA-TCTCCTTGAA-TTGCTGTGGAGCAGATTGAAGTTACA
1 AATCTTACTCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * * * *
76904531 AATCTTA-TCTCCCTG-AGATTGCAGTAGTGTAGATTGAA-ACAACA
1 AATCTTACTCTCCTTGAAG-TTGCAGTGGAGCAGATTGAAGA-TACA
76904575 AATTCTATAC-CT-C-TGAAGTTGCAGTGG
1 AA-TCT-TACTCTCCTTGAAGTTGCAGTGG
76904602 GTTATAAAGA
Statistics
Matches: 829, Mismatches: 216, Indels: 139
0.70 0.18 0.12
Matches are distributed among these distances:
42 1 0.00
43 43 0.05
44 433 0.52
45 203 0.24
46 8 0.01
47 4 0.00
48 5 0.01
49 4 0.00
50 29 0.03
51 86 0.10
52 9 0.01
53 1 0.00
54 2 0.00
56 1 0.00
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (45 bp):
AATCTTACTCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGATACA
Found at i:76904200 original size:139 final size:140
Alignment explanation
Indices: 76903857--76904200 Score: 383
Period size: 139 Copynumber: 2.5 Consensus size: 140
76903847 TACTTCCGTG
* * * * * *
76903857 AAGTTGCAGTGGAGTAGATTGAAGATAG-TGAATCTTATCTCCTTGAAGTTGCAATGGAGTAGAT
1 AAGTTGCAGTGGAGCAGATTGAAAAT-GCT-AATCTTATTTCCCTGAAGTTGCAGTGGAATAGAT
* * * * *
76903921 TGAATATAGCGAATATTATCTCTCTGAAGTTGCAGTGGAACAAATTAAAGCTACAAATTACAAAT
64 TGAAGATAGCGAATATTATCTCTCTAAAGTTGCAATGGAACAAACTAAAGCTACAAACTACAAAT
*
76903986 CTTATCTCCTTA
129 CTTATCTCCCTA
*** * * *
76903998 AAGTTGCAGAT-GAGCAGATTGAAACCACAAATCTTATCTT-TCTGAAGTTGCAGT-GAAGAAGA
1 AAGTTGCAG-TGGAGCAGATTGAAAATGCTAATCTTAT-TTCCCTGAAGTTGCAGTGGAA-TAGA
* * * * *
76904060 TTGAAGATA-CGAGTCTTATCTCTCTAAAGTTGCAATGGAATAGACTAAAGCTACAAGCTACAAA
63 TTGAAGATAGCGAATATTATCTCTCTAAAGTTGCAATGGAACAAACTAAAGCTACAAACTACAAA
*
76904124 TTTTATCTCCCTA
128 TCTTATCTCCCTA
*
76904137 AAGTTACAGTGGAGCAGATTGAAAATGCTAATCTTATTTCCCTGAAGTTGCAGTGGAATAGATT
1 AAGTTGCAGTGGAGCAGATTGAAAATGCTAATCTTATTTCCCTGAAGTTGCAGTGGAATAGATT
76904201 AAAGCTACAA
Statistics
Matches: 165, Mismatches: 31, Indels: 16
0.78 0.15 0.08
Matches are distributed among these distances:
138 3 0.02
139 107 0.65
140 33 0.20
141 21 0.13
142 1 0.01
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.31
Consensus pattern (140 bp):
AAGTTGCAGTGGAGCAGATTGAAAATGCTAATCTTATTTCCCTGAAGTTGCAGTGGAATAGATTG
AAGATAGCGAATATTATCTCTCTAAAGTTGCAATGGAACAAACTAAAGCTACAAACTACAAATCT
TATCTCCCTA
Found at i:76904243 original size:95 final size:95
Alignment explanation
Indices: 76904024--76904243 Score: 244
Period size: 95 Copynumber: 2.3 Consensus size: 95
76904014 GATTGAAACC
** * * * * *
76904024 ACAAATCTTATCTTTCTGAAGTTGCAGTGAAGAAGATTGAAGATACGAGTCTTATCTCTCTAAAG
1 ACAAATCTTATCTCCCTAAAGTTGCAGTGGAGAAGATTGAAAATACGAATCTTATCTCCCTAAAG
76904089 TTGCAATGGAATAGACTAAAGCTACAAGCT
66 TTGCAATGGAATAGACTAAAGCTACAAGCT
* * * * * * *
76904119 ACAAATTTTATCTCCCTAAAGTTACAGTGGAGCAGATTGAAAATGCTAATCTTATTTCCCTGAAG
1 ACAAATCTTATCTCCCTAAAGTTGCAGTGGAGAAGATTGAAAATACGAATCTTATCTCCCTAAAG
* * *
76904184 TTGCAGTGGAATAGATTAAAGCTACAAGTT
66 TTGCAATGGAATAGACTAAAGCTACAAGCT
** *
76904214 ATGAGTCTTAT-TCCCCTAAAGTTGCAGTGG
1 ACAAATCTTATCT-CCCTAAAGTTGCAGTGG
76904244 GATGGATTGA
Statistics
Matches: 102, Mismatches: 22, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
94 1 0.01
95 101 0.99
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (95 bp):
ACAAATCTTATCTCCCTAAAGTTGCAGTGGAGAAGATTGAAAATACGAATCTTATCTCCCTAAAG
TTGCAATGGAATAGACTAAAGCTACAAGCT
Found at i:76906382 original size:3 final size:3
Alignment explanation
Indices: 76906362--76906413 Score: 52
Period size: 3 Copynumber: 17.3 Consensus size: 3
76906352 TAAAAATTAG
* * * *
76906362 ATT ATTT ATT ATT GTT ATT ATT -TT TTT ATT ATT TTT ATT AGT ATT
1 ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
76906407 ATT ATT A
1 ATT ATT A
76906414 ACATTATTTT
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
2 2 0.05
3 35 0.88
4 3 0.08
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (3 bp):
ATT
Found at i:76907150 original size:17 final size:19
Alignment explanation
Indices: 76907111--76907152 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
76907101 CCTATTTCAT
* *
76907111 TTTCAAAATAAAAAGTCGA
1 TTTCAAAATAAAAAATAGA
76907130 TTTCAAAA-AAAAAATAG-
1 TTTCAAAATAAAAAATAGA
76907147 TTTCAA
1 TTTCAA
76907153 CACCAGGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 6 0.29
18 7 0.33
19 8 0.38
ACGTcount: A:0.55, C:0.10, G:0.07, T:0.29
Consensus pattern (19 bp):
TTTCAAAATAAAAAATAGA
Found at i:76907624 original size:13 final size:13
Alignment explanation
Indices: 76907608--76907632 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
76907598 AAAATTTCAA
76907608 AAAAAAAAAATTT
1 AAAAAAAAAATTT
76907621 AAAAAAAAAATT
1 AAAAAAAAAATT
76907633 GCATTTTGAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (13 bp):
AAAAAAAAAATTT
Found at i:76907624 original size:15 final size:16
Alignment explanation
Indices: 76907598--76907630 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
76907588 TTTAATTTTC
76907598 AAAATTTCAAAAAAAA
1 AAAATTTCAAAAAAAA
76907614 AAAATTT-AAAAAAAA
1 AAAATTTCAAAAAAAA
76907629 AA
1 AA
76907631 TTGCATTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (16 bp):
AAAATTTCAAAAAAAA
Found at i:76907668 original size:30 final size:30
Alignment explanation
Indices: 76907628--76907729 Score: 127
Period size: 30 Copynumber: 3.4 Consensus size: 30
76907618 TTTAAAAAAA
* *
76907628 AAATTGCATTTTGACACC-TAAACTTTTC-CT
1 AAATTTCATTTTGAC-CCTTAAAC-TTTCATT
*
76907658 AAATTTCATTTTGACCCTTAAACTTTCTTT
1 AAATTTCATTTTGACCCTTAAACTTTCATT
* *
76907688 AAATTTCACTTAGACCCTTAAACTTTCATT
1 AAATTTCATTTTGACCCTTAAACTTTCATT
76907718 AAATTTCATTTT
1 AAATTTCATTTT
76907730 AATCCTAAAT
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
29 6 0.10
30 57 0.90
ACGTcount: A:0.30, C:0.21, G:0.04, T:0.45
Consensus pattern (30 bp):
AAATTTCATTTTGACCCTTAAACTTTCATT
Found at i:76908009 original size:10 final size:10
Alignment explanation
Indices: 76907990--76908039 Score: 59
Period size: 10 Copynumber: 5.2 Consensus size: 10
76907980 TTTTTCGAAG
*
76907990 GAAAAAAGAA
1 GAAAAGAGAA
76908000 GAAAAGAGAA
1 GAAAAGAGAA
76908010 GAAAAGAGAA
1 GAAAAGAGAA
* *
76908020 -AGAGGAGAA
1 GAAAAGAGAA
76908029 GAAAAGA-AA
1 GAAAAGAGAA
76908038 GA
1 GA
76908040 GTACCGGCGT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
9 11 0.32
10 23 0.68
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (10 bp):
GAAAAGAGAA
Found at i:76908040 original size:17 final size:19
Alignment explanation
Indices: 76907993--76908035 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
76907983 TTCGAAGGAA
76907993 AAAAGAAGAAA-A-GAGAAG
1 AAAAG-AGAAAGAGGAGAAG
76908011 AAAAGAGAAAGAGGAGAAG
1 AAAAGAGAAAGAGGAGAAG
76908030 AAAAGA
1 AAAAGA
76908036 AAGAGTACCG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 5 0.22
18 6 0.26
19 12 0.52
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (19 bp):
AAAAGAGAAAGAGGAGAAG
Found at i:76908101 original size:3 final size:3
Alignment explanation
Indices: 76908095--76908140 Score: 58
Period size: 3 Copynumber: 15.0 Consensus size: 3
76908085 GCTAGACTTT
*
76908095 GAA GAA GAA GAA GGAA GAA GAA GGAA GAA GAA -AA GAG GAA GAA GAA
1 GAA GAA GAA GAA -GAA GAA GAA -GAA GAA GAA GAA GAA GAA GAA GAA
76908141 AGAAAGAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
2 2 0.05
3 30 0.79
4 6 0.16
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:76908113 original size:10 final size:10
Alignment explanation
Indices: 76908098--76908126 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
76908088 AGACTTTGAA
76908098 GAAGAAGAAG
1 GAAGAAGAAG
76908108 GAAGAAGAAG
1 GAAGAAGAAG
76908118 GAAGAAGAA
1 GAAGAAGAA
76908127 AAGAGGAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (10 bp):
GAAGAAGAAG
Found at i:76908113 original size:13 final size:13
Alignment explanation
Indices: 76908095--76908140 Score: 62
Period size: 13 Copynumber: 3.7 Consensus size: 13
76908085 GCTAGACTTT
76908095 GAAGAAGAAGAAG
1 GAAGAAGAAGAAG
76908108 GAAGAAGAAGGAA-
1 GAAGAAGAA-GAAG
76908121 GAAGAA-AAG-AG
1 GAAGAAGAAGAAG
76908132 GAAGAAGAA
1 GAAGAAGAA
76908141 AGAAAGAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
10 1 0.03
11 7 0.23
12 4 0.13
13 15 0.50
14 3 0.10
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (13 bp):
GAAGAAGAAGAAG
Found at i:76908152 original size:24 final size:24
Alignment explanation
Indices: 76908095--76908153 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 24
76908085 GCTAGACTTT
*
76908095 GAAGAAGAAGAAGGAAGAAGAAGGAA
1 GAAGAA-AAG-AGGAAGAAGAAGAAA
76908121 GAAGAAAAGAGGAAGAAGAAAGAAA
1 GAAGAAAAGAGGAAGAAG-AAGAAA
*
76908146 GAAAAAAA
1 GAAGAAAA
76908154 AAAGAAATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
24 9 0.30
25 15 0.50
26 6 0.20
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (24 bp):
GAAGAAAAGAGGAAGAAGAAGAAA
Found at i:76908281 original size:16 final size:16
Alignment explanation
Indices: 76908262--76908292 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
76908252 GAAACAAGCC
*
76908262 CAAAAAAAAATCAAAG
1 CAAAAAAAAAGCAAAG
76908278 CAAAAAAAAAGCAAA
1 CAAAAAAAAAGCAAA
76908293 AAAAAGAAGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.77, C:0.13, G:0.06, T:0.03
Consensus pattern (16 bp):
CAAAAAAAAAGCAAAG
Found at i:76908442 original size:8 final size:8
Alignment explanation
Indices: 76908431--76908485 Score: 78
Period size: 8 Copynumber: 7.0 Consensus size: 8
76908421 CCCAGCAGAA
76908431 AAAAAAAG
1 AAAAAAAG
76908439 -AAAAAAG
1 AAAAAAAG
76908446 -AAAAAAG
1 AAAAAAAG
*
76908453 GAAAAAAG
1 AAAAAAAG
76908461 AAAAAAAG
1 AAAAAAAG
76908469 AAAAAAAG
1 AAAAAAAG
76908477 AAGAAAAAG
1 AA-AAAAAG
76908486 GGGGTTCAAT
Statistics
Matches: 44, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
7 14 0.32
8 24 0.55
9 6 0.14
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (8 bp):
AAAAAAAG
Found at i:76908444 original size:7 final size:7
Alignment explanation
Indices: 76908432--76908474 Score: 68
Period size: 7 Copynumber: 5.9 Consensus size: 7
76908422 CCAGCAGAAA
76908432 AAAAAAG
1 AAAAAAG
76908439 AAAAAAG
1 AAAAAAG
76908446 AAAAAAGG
1 AAAAAA-G
76908454 AAAAAAG
1 AAAAAAG
76908461 AAAAAAAG
1 -AAAAAAG
76908469 AAAAAA
1 AAAAAA
76908475 AGAAGAAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
7 20 0.59
8 14 0.41
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:76908451 original size:15 final size:15
Alignment explanation
Indices: 76908431--76908485 Score: 83
Period size: 15 Copynumber: 3.5 Consensus size: 15
76908421 CCCAGCAGAA
76908431 AAAAAAAGAAAAAAG
1 AAAAAAAGAAAAAAG
*
76908446 AAAAAAGGAAAAAAG
1 AAAAAAAGAAAAAAG
76908461 AAAAAAAGAAAAAAAG
1 AAAAAAAG-AAAAAAG
76908477 AAGAAAAAG
1 AA-AAAAAG
76908486 GGGGTTCAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
15 21 0.58
16 9 0.25
17 6 0.17
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (15 bp):
AAAAAAAGAAAAAAG
Found at i:76909049 original size:18 final size:19
Alignment explanation
Indices: 76909024--76909079 Score: 62
Period size: 18 Copynumber: 3.1 Consensus size: 19
76909014 GAAATTTTTG
**
76909024 AATTTTCGCGTTT-TCAAA
1 AATTTTCGCGTTTGAAAAA
* *
76909042 AGTTTTCGTGTTTGAAAAA
1 AATTTTCGCGTTTGAAAAA
76909061 AATTTTCGCGTTT-AAAAA
1 AATTTTCGCGTTTGAAAAA
76909079 A
1 A
76909080 TTTCTCGTAT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
18 17 0.55
19 14 0.45
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.41
Consensus pattern (19 bp):
AATTTTCGCGTTTGAAAAA
Found at i:76909066 original size:19 final size:18
Alignment explanation
Indices: 76909024--76909471 Score: 85
Period size: 17 Copynumber: 25.1 Consensus size: 18
76909014 GAAATTTTTG
* **
76909024 AATTTTCGCGTTTTCAAA
1 AATTTTCGTGTTTAAAAA
*
76909042 AGTTTTCGTGTTTGAAAAA
1 AATTTTCGTGTTT-AAAAA
*
76909061 AATTTTCGCGTTT-AAAA
1 AATTTTCGTGTTTAAAAA
* *
76909078 AATTTCTCGTATTT-CAAA
1 AATTT-TCGTGTTTAAAAA
* * ** *
76909096 AATTGTCGTTTTTTTATA
1 AATTTTCGTGTTTAAAAA
* * *
76909114 AATCTTCGTGCTTT-CAAT
1 AATTTTCGTG-TTTAAAAA
** *
76909132 AATCCTCGTGCTTT-TAAA
1 AATTTTCGTG-TTTAAAAA
* * *
76909150 AATTCTCATGTTT-CAAA
1 AATTTTCGTGTTTAAAAA
* **
76909167 AATCTTCGTGTTT-TCAA
1 AATTTTCGTGTTTAAAAA
* * *
76909184 AATTCTAGTGTTT-CAAA
1 AATTTTCGTGTTTAAAAA
*
76909201 AATTTTCTTGTTTTCAAAAAA
1 AATTTTCGTG-TTT--AAAAA
*
76909222 AAATTTCGTGTTTTAAAAAAA
1 AATTTTCGTG-TTT--AAAAA
*
76909243 AATATTTCCGTGTTT-TAAA
1 AAT-TTT-CGTGTTTAAAAA
*
76909262 AATTTTCGTGTTT-TAAA
1 AATTTTCGTGTTTAAAAA
* *
76909279 AATTCTCGTATTT---AA
1 AATTTTCGTGTTTAAAAA
*
76909294 AATTTT--TTTTTAAGAAAA
1 AATTTTCGTGTTT-A-AAAA
*
76909312 AATTTT-GT-TTCAAAAA
1 AATTTTCGTGTTTAAAAA
* * *
76909328 AA-TGTCTTGTTT-TAAA
1 AATTTTCGTGTTTAAAAA
**
76909344 AATTCCCGTGTTTCAAAAA
1 AATTTTCGTGTTT-AAAAA
* * *
76909363 AAATGTCGTGTTTTAAGAA
1 AATTTTCGTG-TTTAAAAA
* **
76909382 AA-TTTCGTTTTTTTCCAAA
1 AATTTTCG--TGTTTAAAAA
**
76909401 AATTTTCGTGTTT-CTAA
1 AATTTTCGTGTTTAAAAA
* *
76909418 AATATTCGTGTTT--ACA
1 AATTTTCGTGTTTAAAAA
* **
76909434 AATTCTCGTGTTTTCAAA
1 AATTTTCGTGTTTAAAAA
* *
76909452 AATTCTCGTATTTAAAAA
1 AATTTTCGTGTTTAAAAA
76909470 AA
1 AA
76909472 AAACTTTCGT
Statistics
Matches: 326, Mismatches: 77, Indels: 54
0.71 0.17 0.12
Matches are distributed among these distances:
13 4 0.01
15 9 0.03
16 24 0.07
17 100 0.31
18 100 0.31
19 47 0.14
20 9 0.03
21 23 0.07
22 6 0.02
23 4 0.01
ACGTcount: A:0.33, C:0.12, G:0.10, T:0.45
Consensus pattern (18 bp):
AATTTTCGTGTTTAAAAA
Found at i:76909097 original size:37 final size:37
Alignment explanation
Indices: 76909024--76909097 Score: 96
Period size: 37 Copynumber: 2.0 Consensus size: 37
76909014 GAAATTTTTG
* * * *
76909024 AATTTTCGCGTTTTCAAAAGTTTTCGTGTTTGAAAAA
1 AATTTTCGCGTTTTAAAAAATTTTCGTATTTCAAAAA
76909061 AATTTTCGCG-TTTAAAAAATTTCTCGTATTTCAAAAA
1 AATTTTCGCGTTTTAAAAAATTT-TCGTATTTCAAAAA
76909098 TTGTCGTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
36 10 0.31
37 22 0.69
ACGTcount: A:0.34, C:0.12, G:0.12, T:0.42
Consensus pattern (37 bp):
AATTTTCGCGTTTTAAAAAATTTTCGTATTTCAAAAA
Found at i:76909196 original size:34 final size:34
Alignment explanation
Indices: 76909125--76909219 Score: 120
Period size: 34 Copynumber: 2.8 Consensus size: 34
76909115 ATCTTCGTGC
* * *
76909125 TTTCAATAATCCTCGTGCTTTTAAAAATTCTCATG
1 TTTCAAAAATCTTCGTG-TTTTCAAAATTCTCATG
76909160 TTTCAAAAATCTTCGTGTTTTCAAAATTCT-AGTG
1 TTTCAAAAATCTTCGTGTTTTCAAAATTCTCA-TG
* *
76909194 TTTCAAAAATTTTCTTGTTTTCAAAA
1 TTTCAAAAATCTTCGTGTTTTCAAAA
76909220 AAAAATTTCG
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
33 1 0.02
34 38 0.70
35 15 0.28
ACGTcount: A:0.31, C:0.16, G:0.08, T:0.45
Consensus pattern (34 bp):
TTTCAAAAATCTTCGTGTTTTCAAAATTCTCATG
Found at i:76909199 original size:16 final size:16
Alignment explanation
Indices: 76909148--76909201 Score: 56
Period size: 16 Copynumber: 3.2 Consensus size: 16
76909138 CGTGCTTTTA
76909148 AAAATTCTCA-TGTTTC
1 AAAATTCT-AGTGTTTC
* *
76909164 AAAAATCTTCGTGTTTTC
1 AAAATTC-TAGTG-TTTC
76909182 AAAATTCTAGTGTTTC
1 AAAATTCTAGTGTTTC
76909198 AAAA
1 AAAA
76909202 ATTTTCTTGT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
16 14 0.45
17 7 0.23
18 10 0.32
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.41
Consensus pattern (16 bp):
AAAATTCTAGTGTTTC
Found at i:76909226 original size:22 final size:21
Alignment explanation
Indices: 76909198--76909280 Score: 95
Period size: 21 Copynumber: 4.0 Consensus size: 21
76909188 CTAGTGTTTC
*
76909198 AAAAATTTTCTTGTTTTCAAAA
1 AAAAATTTTCGTGTTTT-AAAA
76909220 AAAAA-TTTCGTGTTTTAAAA
1 AAAAATTTTCGTGTTTTAAAA
76909240 AAAAATATTTCCGTGTTTT----
1 AAAAAT-TTT-CGTGTTTTAAAA
76909259 AAAAATTTTCGTGTTTTAAAA
1 AAAAATTTTCGTGTTTTAAAA
76909280 A
1 A
76909281 TTCTCGTATT
Statistics
Matches: 53, Mismatches: 1, Indels: 15
0.77 0.01 0.22
Matches are distributed among these distances:
17 8 0.15
18 3 0.06
19 6 0.11
20 9 0.17
21 11 0.21
22 8 0.15
23 8 0.15
ACGTcount: A:0.41, C:0.07, G:0.08, T:0.43
Consensus pattern (21 bp):
AAAAATTTTCGTGTTTTAAAA
Found at i:76909241 original size:17 final size:17
Alignment explanation
Indices: 76909045--76909470 Score: 114
Period size: 18 Copynumber: 24.0 Consensus size: 17
76909035 TTTCAAAAGT
*
76909045 TTTCGTGTTTGAAAAAAA
1 TTTCGTGTTT-TAAAAAA
*
76909063 TTTTCGCG-TTTAAAAAA
1 -TTTCGTGTTTTAAAAAA
*
76909080 TTTC-TCGTATTTCAAAAA
1 TTTCGT-GT-TTTAAAAAA
* * *
76909098 TTGTCGTTTTTTTATAAA
1 TT-TCGTGTTTTAAAAAA
* * *
76909116 TCTTCGTGCTTTCAATAA
1 T-TTCGTGTTTTAAAAAA
*
76909134 TCCTCGTGCTTTT-AAAAA
1 T-TTCGTG-TTTTAAAAAA
* *
76909152 TTCTCATG-TTTCAAAAA
1 TT-TCGTGTTTTAAAAAA
*
76909169 TCTTCGTGTTTT-CAAAA
1 T-TTCGTGTTTTAAAAAA
* * *
76909186 TTCTAGTGTTTCAAAAAT
1 TT-TCGTGTTTTAAAAAA
*
76909204 TTTCTTGTTTTCAAAAAAAAA
1 TTTCGTGTTTT----AAAAAA
76909225 TTTCGTGTTTTAAAAAAAAATA
1 TTTCGTGTTTT----AAAAA-A
*
76909247 TTTCCGTGTTTTAAAAAT
1 TTT-CGTGTTTTAAAAAA
76909265 TTTCGTGTTTT-AAAAA
1 TTTCGTGTTTTAAAAAA
*
76909281 TTCTCGT-ATTT--AAAA
1 TT-TCGTGTTTTAAAAAA
*
76909296 TTT--TTTTTTAAGAAAAAA
1 TTTCGTGTTTT---AAAAAA
*
76909314 TTT--TGTTTCAAAAAAA
1 TTTCGTGTTT-TAAAAAA
* *
76909330 TGTCTTGTTTT-AAAAA
1 TTTCGTGTTTTAAAAAA
* *
76909346 TTCCCGTGTTTCAAAAAAAA
1 TT-TCGTGTTT--TAAAAAA
*
76909366 TGTCGTGTTTTAAGAAAA
1 TTTCGTGTTTTAA-AAAA
* *
76909384 TTTCGTTTTTTTCCAAAAAT
1 TTTCG-TGTTTT--AAAAAA
*
76909404 TTTCGTGTTTCTAAAATA
1 TTTCGTGTTT-TAAAAAA
*
76909422 -TTCGTG-TTT-ACAAA
1 TTTCGTGTTTTAAAAAA
*
76909436 TTCTCGTGTTTTCAAAAA
1 TT-TCGTGTTTTAAAAAA
*
76909454 TTCTCGT-ATTTAAAAAA
1 TT-TCGTGTTTTAAAAAA
76909471 AAAACTTTCG
Statistics
Matches: 310, Mismatches: 55, Indels: 86
0.69 0.12 0.19
Matches are distributed among these distances:
12 1 0.00
13 3 0.01
14 4 0.01
15 8 0.03
16 39 0.13
17 71 0.23
18 97 0.31
19 34 0.11
20 16 0.05
21 25 0.08
22 4 0.01
23 8 0.03
ACGTcount: A:0.33, C:0.12, G:0.10, T:0.45
Consensus pattern (17 bp):
TTTCGTGTTTTAAAAAA
Found at i:76909242 original size:23 final size:23
Alignment explanation
Indices: 76909198--76909263 Score: 82
Period size: 22 Copynumber: 3.0 Consensus size: 23
76909188 CTAGTGTTTC
* * *
76909198 AAAAATTTTCTTGTTTT-CAAAA
1 AAAAATTTCCGTGTTTTAAAAAA
76909220 AAAAATTT-CGTGTTTTAAAAAA
1 AAAAATTTCCGTGTTTTAAAAAA
*
76909242 AAATATTTCCGTGTTTTAAAAA
1 AAAAATTTCCGTGTTTTAAAAA
76909264 TTTTCGTGTT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
21 7 0.18
22 19 0.49
23 13 0.33
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.41
Consensus pattern (23 bp):
AAAAATTTCCGTGTTTTAAAAAA
Found at i:76909481 original size:21 final size:20
Alignment explanation
Indices: 76909449--76909495 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 20
76909439 TCGTGTTTTC
76909449 AAAAATTCTCGTATTTAAAAA
1 AAAAATTCTCGT-TTTAAAAA
76909470 AAAAACTT-TCGTTTTAAAAA
1 AAAAA-TTCTCGTTTTAAAAA
*
76909490 AGAAAT
1 AAAAAT
76909496 ACTGCGCTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
19 1 0.04
20 12 0.50
21 9 0.38
22 2 0.08
ACGTcount: A:0.53, C:0.09, G:0.06, T:0.32
Consensus pattern (20 bp):
AAAAATTCTCGTTTTAAAAA
Found at i:76921466 original size:123 final size:123
Alignment explanation
Indices: 76921240--76921482 Score: 337
Period size: 122 Copynumber: 2.0 Consensus size: 123
76921230 AAGAAAATCA
* *
76921240 ACTCATATCACGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGC
1 ACTCATATCACGAGAGGTGAGTTAAGCCTTTTAATTTATGTTTTTCAAAAATCAACTCATATTGC
*
76921305 GAGAAGTGAGTTGAGCCTAGGGGCACGCCAAGGTATTTTTAGTTTATGTTTTAAATTG
66 GAGAAGTGAGTTGAGCCTAGGGACACGCCAAGGTATTTTTAGTTTATGTTTTAAATTG
** *
76921363 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTATGTTTTTC-AAAATCAATTCATATTGC
1 ACTCATATCACGAGAGGTGAGTTAAGCCTTTTAATTTATGTTTTTCAAAAATCAACTCATATTGC
* * ** * * *
76921427 TAGAGGTGAGTTGAGCCTCA-GGACACGCTGAGGTAATTTTAATTTCTGTTGTTAAA
66 GAGAAGTGAGTTGAGCCT-AGGGACACGCCAAGGTATTTTTAGTTTATGTT-TTAAA
76921483 AAAATCAACT
Statistics
Matches: 105, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
122 57 0.54
123 48 0.46
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.37
Consensus pattern (123 bp):
ACTCATATCACGAGAGGTGAGTTAAGCCTTTTAATTTATGTTTTTCAAAAATCAACTCATATTGC
GAGAAGTGAGTTGAGCCTAGGGACACGCCAAGGTATTTTTAGTTTATGTTTTAAATTG
Found at i:76921602 original size:72 final size:72
Alignment explanation
Indices: 76921395--76922417 Score: 1699
Period size: 72 Copynumber: 14.1 Consensus size: 72
76921385 TAAGCCTTTT
* * * ** * *
76921395 AATTTATGTTTTTCAAAA-TCAATTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
*
76921459 GTAATTTT
65 GTAATTTC
* * * *
76921467 AATTTCTGTTGTTAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGA
1 AATTTCTGTT-TT-CAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGA
76921532 GGTAATTTC
64 GGTAATTTC
* * *
76921541 AATTTCTGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
76921606 TATTTTC
66 TAATTTC
76921613 AATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
76921678 GTAATTTC
65 GTAATTTC
76921686 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
76921751 TAATTTC
66 TAATTTC
76921758 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
76921823 TATTTTC
66 TAATTTC
*
76921830 AATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
76921895 GTAATTTC
65 GTAATTTC
76921903 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
76921968 TAATTTC
66 TAATTTC
76921975 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
76922040 TATTTTC
66 TAATTTC
*
76922047 AATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
76922112 GTAATTTC
65 GTAATTTC
76922120 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
76922185 TATTTTC
66 TAATTTC
*
76922192 AATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
76922257 GTAATTTC
65 GTAATTTC
*
76922265 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
76922330 TATTTTC
66 TAATTTC
* * *
76922337 AATTTCTGCTTTTCAAAACTT-AACTCATATTGCGAGAGATGAGTTGAGCCTCAAGGCACGCTGA
1 AATTTCTG-TTTTCAAAA-TTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGA
*
76922401 GGTATTTTC
64 GGTAATTTC
76922410 AATTTCTG
1 AATTTCTG
76922418 CTTTACTAAT
Statistics
Matches: 909, Mismatches: 33, Indels: 17
0.95 0.03 0.02
Matches are distributed among these distances:
71 2 0.00
72 497 0.55
73 349 0.38
74 61 0.07
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.33
Consensus pattern (72 bp):
AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
TAATTTC
Found at i:76921795 original size:217 final size:217
Alignment explanation
Indices: 76921391--76922417 Score: 1738
Period size: 217 Copynumber: 4.7 Consensus size: 217
76921381 GAGTTAAGCC
* * * * ** *
76921391 TTTT-AATTTATGTTTTTCAAAA-TCAATTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACG
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
* * * *
76921454 CTGAGGTAATTTTAATTTCTGTTGTTAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCT
66 TTGAGGTAATTTCAATTTCTGTT-TT-CAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCT
* * *
76921519 CAGGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGT
129 CAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGT
* *
76921584 TGAGCCTCAGGACACGCTGAGGTA
194 TGAGCCTCAAGACACGTTGAGGTA
76921608 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
76921673 TTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
66 TTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
76921738 AGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTG
131 AGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTG
76921803 AGCCTCAAGACACGTTGAGGTA
196 AGCCTCAAGACACGTTGAGGTA
*
76921825 TTTTCAATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
76921890 TTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
66 TTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
76921955 AGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTG
131 AGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTG
76922020 AGCCTCAAGACACGTTGAGGTA
196 AGCCTCAAGACACGTTGAGGTA
*
76922042 TTTTCAATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
76922107 TTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
66 TTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
* *
76922172 AGACACGTTGAGGTATTTTCAATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTT
131 AGACACGTTGAGGTAATTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTT
76922237 GAGCCTCAAGACACGTTGAGGTA
195 GAGCCTCAAGACACGTTGAGGTA
* *
76922260 ATTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACA
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
* *
76922324 TTGAGGTATTTTCAATTTCTGCTTTTCAAAACTT-AACTCATATTGCGAGAGATGAGTTGAGCCT
66 TTGAGGTAATTTCAATTTCTG-TTTTCAAAA-TTCAACTCATATTGCGAGAAATGAGTTGAGCCT
* * *
76922388 CAAGGCACGCTGAGGTATTTTCAATTTCTG
129 CAAGACACGTTGAGGTAATTTCAATTTCTG
76922418 CTTTACTAAT
Statistics
Matches: 779, Mismatches: 26, Indels: 9
0.96 0.03 0.01
Matches are distributed among these distances:
217 566 0.73
218 154 0.20
219 59 0.08
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (217 bp):
TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
TTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
AGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTG
AGCCTCAAGACACGTTGAGGTA
Found at i:76922429 original size:145 final size:145
Alignment explanation
Indices: 76921395--76922417 Score: 1725
Period size: 145 Copynumber: 7.1 Consensus size: 145
76921385 TAAGCCTTTT
* * * ** * *
76921395 AATTTATGTTTTTCAAAA-TCAATTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
* * *
76921459 GTAATTTT-AATTTCTG-TTGTTAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAG
65 GT-ATTTTCAATTTCTGCTT-TT-CAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAA
*
76921522 GACACGCTGAGGTAATTTC
127 GACACGTTGAGGTAATTTC
* * *
76921541 AATTTCTGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
76921606 TATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
66 TATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
76921671 CGTTGAGGTAATTTC
131 CGTTGAGGTAATTTC
76921686 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
76921751 TAATTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
66 TATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
*
76921815 CGTTGAGGTATTTTC
131 CGTTGAGGTAATTTC
*
76921830 AATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
*
76921895 GTAATTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAC
65 GTATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAC
76921959 ACGTTGAGGTAATTTC
130 ACGTTGAGGTAATTTC
76921975 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
76922040 TATTTTCAATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
66 TATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
76922105 CGTTGAGGTAATTTC
131 CGTTGAGGTAATTTC
76922120 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
76922185 TATTTTCAATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
66 TATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
76922250 CGTTGAGGTAATTTC
131 CGTTGAGGTAATTTC
*
76922265 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
* *
76922330 TATTTTCAATTTCTGCTTTTCAAAACTT-AACTCATATTGCGAGAGATGAGTTGAGCCTCAAGGC
66 TATTTTCAATTTCTGCTTTTCAAAA-TTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAC
* *
76922394 ACGCTGAGGTATTTTC
130 ACGTTGAGGTAATTTC
76922410 AATTTCTG
1 AATTTCTG
76922418 CTTTACTAAT
Statistics
Matches: 845, Mismatches: 26, Indels: 13
0.96 0.03 0.01
Matches are distributed among these distances:
144 141 0.17
145 640 0.76
146 62 0.07
147 2 0.00
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.33
Consensus pattern (145 bp):
AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
TATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
CGTTGAGGTAATTTC
Found at i:76922523 original size:14 final size:14
Alignment explanation
Indices: 76922501--76922533 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
76922491 TCTTTTCAAA
76922501 TTCTG-TTTTTAAT
1 TTCTGTTTTTTAAT
76922514 TTCTGTTTTTTAAT
1 TTCTGTTTTTTAAT
76922528 TTCTGT
1 TTCTGT
76922534 GTTTCAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 5 0.26
14 14 0.74
ACGTcount: A:0.12, C:0.09, G:0.09, T:0.70
Consensus pattern (14 bp):
TTCTGTTTTTTAAT
Found at i:76922523 original size:86 final size:87
Alignment explanation
Indices: 76922332--76922523 Score: 214
Period size: 86 Copynumber: 2.2 Consensus size: 87
76922322 CATTGAGGTA
* * * *
76922332 TTTTCAATTTCTGCTTTTCAAAACTTAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGGCACG
1 TTTTTAATTTCTGTTTTTCAAAACTCAACTCATATTGCAAGAGATGAGTTGAGCCTCAAGGCACG
*
76922397 CTGAGGTATTTTCAATTTCTGC
66 CTGAGGTATTTTCAAATTCTGC
* * * *
76922419 TTTACTAA-TTCTACTTTTTC-AAA-TCAACTCATATTGCAAGAGGTGAGTTGAGTCTC-AGGCC
1 TTT-TTAATTTCT-GTTTTTCAAAACTCAACTCATATTGCAAGAGATGAGTTGAGCCTCAAGG--
*
76922480 ACACGCTGAGGTCTTTTCAAATTCTG-
62 -CACGCTGAGGTATTTTCAAATTCTGC
76922506 TTTTTAATTTCTGTTTTT
1 TTTTTAATTTCTGTTTTT
76922524 TAATTTCTGT
Statistics
Matches: 87, Mismatches: 12, Indels: 13
0.78 0.11 0.12
Matches are distributed among these distances:
85 3 0.03
86 37 0.43
87 17 0.20
88 30 0.34
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.40
Consensus pattern (87 bp):
TTTTTAATTTCTGTTTTTCAAAACTCAACTCATATTGCAAGAGATGAGTTGAGCCTCAAGGCACG
CTGAGGTATTTTCAAATTCTGC
Found at i:76922623 original size:53 final size:54
Alignment explanation
Indices: 76922545--76922794 Score: 386
Period size: 53 Copynumber: 4.7 Consensus size: 54
76922535 TTTCAAAAAA
* *
76922545 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTATTTTTC
76922599 AAAAATCAA-TCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTATTTTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTATTTTTC
*
76922652 AAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCC--TT--TTTCTATTTTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTATTTTTC
* *
76922702 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTGCAAATTCT-GTTTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTT--AATTTCTATTTTTC
*
76922757 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
76922795 GGCTCACGTG
Statistics
Matches: 182, Mismatches: 7, Indels: 13
0.90 0.03 0.06
Matches are distributed among these distances:
50 47 0.26
52 4 0.02
53 50 0.27
54 35 0.19
55 42 0.23
56 4 0.02
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (54 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTATTTTTC
Found at i:76923062 original size:15 final size:17
Alignment explanation
Indices: 76923036--76923069 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
76923026 TTTAATTTTC
76923036 AAAATTTCAAAAAA-AA
1 AAAATTTCAAAAAATAA
76923052 AAAATTT-AAAAAATAA
1 AAAATTTCAAAAAATAA
76923068 AA
1 AA
76923070 TTGCATTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (17 bp):
AAAATTTCAAAAAATAA
Found at i:76923130 original size:30 final size:29
Alignment explanation
Indices: 76923067--76923183 Score: 119
Period size: 30 Copynumber: 3.9 Consensus size: 29
76923057 TTAAAAAATA
* *
76923067 AAATTGCATTTTGACACCTAAACTTT-TCCT
1 AAATTTCATTTTGAC-CCTAAACTTTCT-TT
76923097 AAATTTCATTTTGACCCTTAAACTTTCTTT
1 AAATTTCATTTTGACCC-TAAACTTTCTTT
* * *
76923127 AAATTTCACTTAGACCCCTAAACTTTCATT
1 AAATTTCATTTTGA-CCCTAAACTTTCTTT
* * *
76923157 AAATTTCATTTTAATCCTAAATTTTCT
1 AAATTTCATTTTGACCCTAAACTTTCT
76923184 AAAAATTACA
Statistics
Matches: 73, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
29 12 0.16
30 57 0.78
31 4 0.05
ACGTcount: A:0.31, C:0.21, G:0.03, T:0.44
Consensus pattern (29 bp):
AAATTTCATTTTGACCCTAAACTTTCTTT
Found at i:76923446 original size:10 final size:10
Alignment explanation
Indices: 76923427--76923476 Score: 59
Period size: 10 Copynumber: 5.2 Consensus size: 10
76923417 TTTTTCGAAG
*
76923427 GAAAAAAGAA
1 GAAAAGAGAA
76923437 GAAAAGAGAA
1 GAAAAGAGAA
76923447 GAAAAGAGAA
1 GAAAAGAGAA
* *
76923457 -AGAGGAGAA
1 GAAAAGAGAA
76923466 GAAAAGA-AA
1 GAAAAGAGAA
76923475 GA
1 GA
76923477 GTACCGGCGT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
9 11 0.32
10 23 0.68
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (10 bp):
GAAAAGAGAA
Found at i:76923477 original size:17 final size:19
Alignment explanation
Indices: 76923430--76923472 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
76923420 TTCGAAGGAA
76923430 AAAAGAAGAAA-A-GAGAAG
1 AAAAG-AGAAAGAGGAGAAG
76923448 AAAAGAGAAAGAGGAGAAG
1 AAAAGAGAAAGAGGAGAAG
76923467 AAAAGA
1 AAAAGA
76923473 AAGAGTACCG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 5 0.22
18 6 0.26
19 12 0.52
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (19 bp):
AAAAGAGAAAGAGGAGAAG
Found at i:76923538 original size:3 final size:3
Alignment explanation
Indices: 76923532--76923573 Score: 59
Period size: 3 Copynumber: 14.0 Consensus size: 3
76923522 GCTAGACTTT
*
76923532 GAA GAA GAA GAA GGAA GAA GAA GAA GAA -AA GAG GAA GAA GAA
1 GAA GAA GAA GAA -GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
76923574 AGAAAGAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
2 2 0.06
3 30 0.86
4 3 0.09
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:76923550 original size:13 final size:13
Alignment explanation
Indices: 76923533--76923591 Score: 64
Period size: 14 Copynumber: 4.4 Consensus size: 13
76923523 CTAGACTTTG
*
76923533 AAGAAGAAGAAGG
1 AAGAAGAAGAAGA
76923546 AAGAAGAAGAAGAA
1 AAGAAGAAGAAG-A
*
76923560 AAGAGGAAGAAGA
1 AAGAAGAAGAAGA
* *
76923573 AAGAAAGAAAAAAA
1 AAG-AAGAAGAAGA
76923587 AAGAA
1 AAGAA
76923592 ATAATAAAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
13 18 0.46
14 21 0.54
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (13 bp):
AAGAAGAAGAAGA
Found at i:76923571 original size:27 final size:27
Alignment explanation
Indices: 76923533--76923591 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
76923523 CTAGACTTTG
* *
76923533 AAGAAGAAGAAGGAAG-AAGAAGAAGAA
1 AAGAAGAAGAAGAAAGAAAGAA-AAAAA
*
76923560 AAGAGGAAGAAGAAAGAAAGAAAAAAA
1 AAGAAGAAGAAGAAAGAAAGAAAAAAA
76923587 AAGAA
1 AAGAA
76923592 ATAATAAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 22 0.81
28 5 0.19
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (27 bp):
AAGAAGAAGAAGAAAGAAAGAAAAAAA
Found at i:76923576 original size:24 final size:25
Alignment explanation
Indices: 76923536--76923591 Score: 64
Period size: 24 Copynumber: 2.3 Consensus size: 25
76923526 GACTTTGAAG
*
76923536 AAGAAGAAGGAAGAAG-AAGAAGAA
1 AAGAAGAAGGAAGAAGAAAGAAAAA
*
76923560 AAGAGGAA-GAAGAAAGAAAGAAAAA
1 AAGAAGAAGGAAG-AAGAAAGAAAAA
76923585 AA-AAGAA
1 AAGAAGAA
76923592 ATAATAAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 4 0.15
24 14 0.52
25 9 0.33
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (25 bp):
AAGAAGAAGGAAGAAGAAAGAAAAA
Found at i:76923713 original size:16 final size:16
Alignment explanation
Indices: 76923694--76923724 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
76923684 GAAACAAGCC
*
76923694 CAAAAAAAAATCAAAG
1 CAAAAAAAAAGCAAAG
76923710 CAAAAAAAAAGCAAA
1 CAAAAAAAAAGCAAA
76923725 AAAAAGAAGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.77, C:0.13, G:0.06, T:0.03
Consensus pattern (16 bp):
CAAAAAAAAAGCAAAG
Found at i:76923878 original size:14 final size:14
Alignment explanation
Indices: 76923876--76923933 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 14
76923866 AAAAGGAAGA
76923876 AAAAGAAGAAAAAAG
1 AAAA-AAGAAAAAAG
76923891 AAAAAAGAAAAAAGG
1 AAAAAAGAAAAAA-G
76923906 AAAAAAGAAAAAAG
1 AAAAAAGAAAAAAG
76923920 AAAAAAGAAGAAAA
1 AAAAAAGAA-AAAA
76923934 AGGGGGTTCA
Statistics
Matches: 41, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
14 19 0.46
15 22 0.54
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (14 bp):
AAAAAAGAAAAAAG
Found at i:76923887 original size:22 final size:23
Alignment explanation
Indices: 76923859--76923934 Score: 102
Period size: 23 Copynumber: 3.3 Consensus size: 23
76923849 GCAGCCCAGC
*
76923859 AGAAAAAA-AAAGGAAGAAAAAGA
1 AGAAAAAAGAAA-AAAGAAAAAGA
76923882 AGAAAAAAGAAAAAAGAAAAA-A
1 AGAAAAAAGAAAAAAGAAAAAGA
*
76923904 GGAAAAAAGAAAAAAGAAAAAAGA
1 AGAAAAAAGAAAAAAG-AAAAAGA
76923928 AGAAAAA
1 AGAAAAA
76923935 GGGGGTTCAA
Statistics
Matches: 47, Mismatches: 3, Indels: 5
0.85 0.05 0.09
Matches are distributed among these distances:
22 16 0.34
23 21 0.45
24 10 0.21
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (23 bp):
AGAAAAAAGAAAAAAGAAAAAGA
Found at i:76923893 original size:7 final size:7
Alignment explanation
Indices: 76923876--76923933 Score: 89
Period size: 7 Copynumber: 7.9 Consensus size: 7
76923866 AAAAGGAAGA
76923876 AAAAGAAG
1 AAAA-AAG
76923884 AAAAAAG
1 AAAAAAG
76923891 AAAAAAG
1 AAAAAAG
76923898 AAAAAAGG
1 AAAAAA-G
76923906 AAAAAAG
1 AAAAAAG
76923913 AAAAAAG
1 AAAAAAG
76923920 AAAAAAG
1 AAAAAAG
76923927 AAGAAAA
1 AA-AAAA
76923934 AGGGGGTTCA
Statistics
Matches: 48, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
7 33 0.69
8 15 0.31
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:76924499 original size:18 final size:19
Alignment explanation
Indices: 76924474--76924529 Score: 62
Period size: 18 Copynumber: 3.1 Consensus size: 19
76924464 GAAATTTTCG
**
76924474 AATTTTCGCGTTT-TCAAA
1 AATTTTCGCGTTTGAAAAA
* *
76924492 AGTTTTCGTGTTTGAAAAA
1 AATTTTCGCGTTTGAAAAA
76924511 AATTTTCGCGTTT-AAAAA
1 AATTTTCGCGTTTGAAAAA
76924529 A
1 A
76924530 TTTCTCGTAT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
18 17 0.55
19 14 0.45
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.41
Consensus pattern (19 bp):
AATTTTCGCGTTTGAAAAA
Found at i:76924547 original size:37 final size:37
Alignment explanation
Indices: 76924474--76924547 Score: 96
Period size: 37 Copynumber: 2.0 Consensus size: 37
76924464 GAAATTTTCG
* * * *
76924474 AATTTTCGCGTTTTCAAAAGTTTTCGTGTTTGAAAAA
1 AATTTTCGCGTTTTAAAAAATTTTCGTATTTCAAAAA
76924511 AATTTTCGCG-TTTAAAAAATTTCTCGTATTTCAAAAA
1 AATTTTCGCGTTTTAAAAAATTT-TCGTATTTCAAAAA
76924548 TTGTCGTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
36 10 0.31
37 22 0.69
ACGTcount: A:0.34, C:0.12, G:0.12, T:0.42
Consensus pattern (37 bp):
AATTTTCGCGTTTTAAAAAATTTTCGTATTTCAAAAA
Found at i:76924648 original size:16 final size:16
Alignment explanation
Indices: 76924597--76924650 Score: 56
Period size: 16 Copynumber: 3.2 Consensus size: 16
76924587 CGTGCTTTTA
76924597 AAAATTCTCA-TGTTTC
1 AAAATTCT-AGTGTTTC
* *
76924613 AAAAATCTTCGTGTTTTC
1 AAAATTC-TAGTG-TTTC
76924631 AAAATTCTAGTGTTTC
1 AAAATTCTAGTGTTTC
76924647 AAAA
1 AAAA
76924651 ATTTTCTTGT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
16 14 0.45
17 7 0.23
18 10 0.32
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.41
Consensus pattern (16 bp):
AAAATTCTAGTGTTTC
Found at i:76924666 original size:18 final size:18
Alignment explanation
Indices: 76924474--76924910 Score: 157
Period size: 17 Copynumber: 24.5 Consensus size: 18
76924464 GAAATTTTCG
*
76924474 AATTTTCGCGTTTTCAAA
1 AATTTTCGTGTTTTCAAA
* **
76924492 AGTTTTCGTGTTTGAAAAA
1 AATTTTCGTGTTT-TCAAA
* *
76924511 AATTTTCGCG-TTTAAAA
1 AATTTTCGTGTTTTCAAA
*
76924528 AATTTCTCGT-ATTTCAAA
1 AATTT-TCGTGTTTTCAAA
* * *
76924546 AATTGTCGT-TTTTTATA
1 AATTTTCGTGTTTTCAAA
* * *
76924563 AATCTTCGTGCTTTCAAT
1 AATTTTCGTGTTTTCAAA
**
76924581 AATCCTCGTGCTTTT-AAA
1 AATTTTCGTG-TTTTCAAA
* *
76924599 AATTCTCATG-TTTCAAA
1 AATTTTCGTGTTTTCAAA
*
76924616 AATCTTCGTGTTTTC-AA
1 AATTTTCGTGTTTTCAAA
* *
76924633 AATTCTAGTG-TTTCAAA
1 AATTTTCGTGTTTTCAAA
*
76924650 AATTTTCTTGTTTTCAAAAAAA
1 AATTTTCGTGTTTTC----AAA
* *
76924672 AAATTTCGTGTTTTAAAAAAA
1 AATTTTCGTGTTTT---CAAA
76924693 AATATTTCCGTGTTTT-AAA
1 AAT-TTT-CGTGTTTTCAAA
76924712 AATTTTCGTGTTTT-AAA
1 AATTTTCGTGTTTTCAAA
* *
76924729 AATTCTCGT-ATTT--AA
1 AATTTTCGTGTTTTCAAA
*
76924744 AATTTT--T-TTTTAAGAAA
1 AATTTTCGTGTTTT--CAAA
*
76924761 AAATTT--TG-TTTCAAAA
1 AATTTTCGTGTTTTC-AAA
* * *
76924777 AAATGTCTTGTTTT-AAA
1 AATTTTCGTGTTTTCAAA
**
76924794 AATTCCCGTG-TTTCAAAAA
1 AATTTTCGTGTTTTC--AAA
* *
76924813 AAATGTCGTGTTTT-AAGA
1 AATTTTCGTGTTTTCAA-A
* *
76924831 AAATTTCGTTTTTTTCCAAA
1 AATTTTCG-TGTTTT-CAAA
*
76924851 AATTTTCGTG-TTTCTAA
1 AATTTTCGTGTTTTCAAA
* *
76924868 AATATTCGTG-TTT-ACA
1 AATTTTCGTGTTTTCAAA
*
76924884 AATTCTCGTGTTTTCAAA
1 AATTTTCGTGTTTTCAAA
*
76924902 AATTCTCGT
1 AATTTTCGT
76924911 ATTTAAAAAA
Statistics
Matches: 320, Mismatches: 62, Indels: 74
0.70 0.14 0.16
Matches are distributed among these distances:
13 4 0.01
15 7 0.02
16 30 0.09
17 112 0.35
18 84 0.26
19 39 0.12
20 11 0.03
21 7 0.02
22 18 0.06
23 8 0.03
ACGTcount: A:0.32, C:0.12, G:0.11, T:0.45
Consensus pattern (18 bp):
AATTTTCGTGTTTTCAAA
Found at i:76924674 original size:23 final size:22
Alignment explanation
Indices: 76924647--76924713 Score: 91
Period size: 23 Copynumber: 3.0 Consensus size: 22
76924637 CTAGTGTTTC
*
76924647 AAAAATTTTCTTGTTTTCAAAAA
1 AAAAATTTTCGTGTTTT-AAAAA
76924670 AAAAA-TTTCGTGTTTTAAAAA
1 AAAAATTTTCGTGTTTTAAAAA
*
76924691 AAAATATTTCCGTGTTTTAAAAA
1 AAAA-ATTTTCGTGTTTTAAAAA
76924714 TTTTCGTGTT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
21 9 0.22
22 11 0.28
23 20 0.50
ACGTcount: A:0.45, C:0.07, G:0.07, T:0.40
Consensus pattern (22 bp):
AAAAATTTTCGTGTTTTAAAAA
Found at i:76924678 original size:22 final size:21
Alignment explanation
Indices: 76924647--76924713 Score: 89
Period size: 22 Copynumber: 3.0 Consensus size: 21
76924637 CTAGTGTTTC
* *
76924647 AAAAATTTTCTTGTTTTCAAAA
1 AAAAAATTTCGTGTTTT-AAAA
76924669 AAAAAATTTCGTGTTTTAAAA
1 AAAAAATTTCGTGTTTTAAAA
76924690 AAAAATATTTCCGTGTTTTAAAA
1 AAAAA-ATTT-CGTGTTTTAAAA
76924713 A
1 A
76924714 TTTTCGTGTT
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
21 9 0.22
22 19 0.46
23 13 0.32
ACGTcount: A:0.45, C:0.07, G:0.07, T:0.40
Consensus pattern (21 bp):
AAAAAATTTCGTGTTTTAAAA
Found at i:76924691 original size:17 final size:17
Alignment explanation
Indices: 76924495--76924920 Score: 107
Period size: 18 Copynumber: 24.0 Consensus size: 17
76924485 TTTCAAAAGT
*
76924495 TTTCGTGTTTGAAAAAAA
1 TTTCGTGTTT-TAAAAAA
*
76924513 TTTTCGCG-TTTAAAAAA
1 -TTTCGTGTTTTAAAAAA
*
76924530 TTTC-TCGTATTTCAAAAA
1 TTTCGT-GT-TTTAAAAAA
* *
76924548 TTGTCGT-TTTTTATAAA
1 TT-TCGTGTTTTAAAAAA
* * *
76924565 TCTTCGTGCTTTCAATAA
1 T-TTCGTGTTTTAAAAAA
*
76924583 TCCTCGTGCTTTT-AAAAA
1 T-TTCGTG-TTTTAAAAAA
* *
76924601 TTCTCATG-TTTCAAAAA
1 TT-TCGTGTTTTAAAAAA
*
76924618 TCTTCGTGTTTT-CAAAA
1 T-TTCGTGTTTTAAAAAA
* * *
76924635 TTCTAGTGTTTCAAAAAT
1 TT-TCGTGTTTTAAAAAA
*
76924653 TTTCTTGTTTTCAAAAAAAAAA
1 TTTCGTGTTTT-----AAAAAA
76924675 TTTCGTGTTTTAAAAAAAAATA
1 TTTCGTGTTTT----AAAAA-A
*
76924697 TTTCCGTGTTTTAAAAAT
1 TTT-CGTGTTTTAAAAAA
76924715 TTTCGTGTTTT-AAAAA
1 TTTCGTGTTTTAAAAAA
*
76924731 TTCTCGT-ATTT--AAAA
1 TT-TCGTGTTTTAAAAAA
*
76924746 TTT--TTTTTTAAGAAAAAA
1 TTTCGTGTTTT---AAAAAA
*
76924764 TTT--TGTTTCAAAAAAA
1 TTTCGTGTTT-TAAAAAA
* *
76924780 TGTCTTGTTTT-AAAAA
1 TTTCGTGTTTTAAAAAA
* *
76924796 TTCCCGTGTTTCAAAAAAAA
1 TT-TCGTGTTT--TAAAAAA
*
76924816 TGTCGTGTTTTAAGAAAA
1 TTTCGTGTTTTAA-AAAA
* *
76924834 TTTCGTTTTTTTCCAAAAAT
1 TTTCG-TGTTTT--AAAAAA
*
76924854 TTTCGTGTTTCTAAAATA
1 TTTCGTGTTT-TAAAAAA
*
76924872 -TTCGTG-TTT-ACAAA
1 TTTCGTGTTTTAAAAAA
*
76924886 TTCTCGTGTTTTCAAAAA
1 TT-TCGTGTTTTAAAAAA
*
76924904 TTCTCGT-ATTTAAAAAA
1 TT-TCGTGTTTTAAAAAA
76924921 AAAACTTTCG
Statistics
Matches: 311, Mismatches: 52, Indels: 90
0.69 0.11 0.20
Matches are distributed among these distances:
12 1 0.00
13 3 0.01
14 4 0.01
15 8 0.03
16 39 0.13
17 83 0.27
18 87 0.28
19 32 0.10
20 16 0.05
21 11 0.04
22 19 0.06
23 8 0.03
ACGTcount: A:0.34, C:0.12, G:0.10, T:0.45
Consensus pattern (17 bp):
TTTCGTGTTTTAAAAAA
Found at i:76924892 original size:16 final size:16
Alignment explanation
Indices: 76924848--76924919 Score: 65
Period size: 17 Copynumber: 4.3 Consensus size: 16
76924838 GTTTTTTTCC
*
76924848 AAAAATTTTCGTGTTT
1 AAAAATTCTCGTGTTT
*
76924864 CTAAAATAT-TCGTGTTT
1 -AAAAAT-TCTCGTGTTT
*
76924881 ACAAATTCTCGTGTTTT
1 AAAAATTCTCGTG-TTT
*
76924898 CAAAAATTCTCGTATTT
1 -AAAAATTCTCGTGTTT
76924915 AAAAA
1 AAAAA
76924920 AAAAACTTTC
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
15 1 0.02
16 14 0.30
17 19 0.41
18 12 0.26
ACGTcount: A:0.35, C:0.12, G:0.10, T:0.43
Consensus pattern (16 bp):
AAAAATTCTCGTGTTT
Found at i:76924931 original size:21 final size:20
Alignment explanation
Indices: 76924899--76924945 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 20
76924889 TCGTGTTTTC
76924899 AAAAATTCTCGTATTTAAAAA
1 AAAAATTCTCGT-TTTAAAAA
76924920 AAAAACTT-TCGTTTTAAAAA
1 AAAAA-TTCTCGTTTTAAAAA
*
76924940 AGAAAT
1 AAAAAT
76924946 ACTGCGCTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
19 1 0.04
20 12 0.50
21 9 0.38
22 2 0.08
ACGTcount: A:0.53, C:0.09, G:0.06, T:0.32
Consensus pattern (20 bp):
AAAAATTCTCGTTTTAAAAA
Found at i:76932610 original size:56 final size:56
Alignment explanation
Indices: 76932524--76932635 Score: 224
Period size: 56 Copynumber: 2.0 Consensus size: 56
76932514 CCTTAATCCC
76932524 GATGCTTAGACGAGCCGGAGCCCTTTGGGTTTAATTCATCCAATCTCACTCTAACT
1 GATGCTTAGACGAGCCGGAGCCCTTTGGGTTTAATTCATCCAATCTCACTCTAACT
76932580 GATGCTTAGACGAGCCGGAGCCCTTTGGGTTTAATTCATCCAATCTCACTCTAACT
1 GATGCTTAGACGAGCCGGAGCCCTTTGGGTTTAATTCATCCAATCTCACTCTAACT
76932636 TGCATATCAA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (56 bp):
GATGCTTAGACGAGCCGGAGCCCTTTGGGTTTAATTCATCCAATCTCACTCTAACT
Found at i:76934068 original size:98 final size:98
Alignment explanation
Indices: 76933896--76934090 Score: 363
Period size: 98 Copynumber: 2.0 Consensus size: 98
76933886 ACAATAAAAT
*
76933896 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATTCC
1 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
*
76933961 TCTAGAATCCCAAACTCGGAATATTTCCTTTAC
66 TCTAAAATCCCAAACTCGGAATATTTCCTTTAC
76933994 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
1 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
*
76934059 TTTAAAATCCCAAACTCGGAATATTTCCTTTA
66 TCTAAAATCCCAAACTCGGAATATTTCCTTTA
76934091 TTGTTTTTAG
Statistics
Matches: 94, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
98 94 1.00
ACGTcount: A:0.37, C:0.25, G:0.10, T:0.28
Consensus pattern (98 bp):
TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
TCTAAAATCCCAAACTCGGAATATTTCCTTTAC
Found at i:76935261 original size:19 final size:19
Alignment explanation
Indices: 76935237--76935328 Score: 157
Period size: 19 Copynumber: 4.8 Consensus size: 19
76935227 AATCATATAT
76935237 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
**
76935256 TCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATA
76935275 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
76935294 TCTAGGATTGCATATCATA
1 TCTAAGATTGCATATCATA
76935313 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
76935329 CTCAAAAATT
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 67 1.00
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:76935284 original size:38 final size:38
Alignment explanation
Indices: 76935214--76935328 Score: 158
Period size: 38 Copynumber: 2.9 Consensus size: 38
76935204 AAATTAAATC
*
76935214 TCTAAGATTACAAAATCATATATTCTAAGATTGCATATCATA
1 TCTAAGATTAC-ATATC--ATA-TCTAAGATTGCATATCATA
*
76935256 TCTAAGATTATATATCATATCTAAGATTGCATATCATA
1 TCTAAGATTACATATCATATCTAAGATTGCATATCATA
* *
76935294 TCTAGGATTGCATATCATATCTAAGATTGCATATC
1 TCTAAGATTACATATCATATCTAAGATTGCATATC
76935329 CTCAAAAATT
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
38 51 0.75
39 3 0.04
41 4 0.06
42 10 0.15
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.37
Consensus pattern (38 bp):
TCTAAGATTACATATCATATCTAAGATTGCATATCATA
Found at i:76937297 original size:29 final size:28
Alignment explanation
Indices: 76937265--76937324 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 28
76937255 AATTTTTTTT
76937265 ATAAATTTTTAATCATTTTTAT-TTTTAAA
1 ATAAA-TTTT-ATCATTTTTATATTTTAAA
76937294 ATAAATTTTATCATTTTTATCATTTTAAA
1 ATAAATTTTATCATTTTTAT-ATTTTAAA
76937323 AT
1 AT
76937325 TTATAAAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
27 11 0.38
28 4 0.14
29 14 0.48
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (28 bp):
ATAAATTTTATCATTTTTATATTTTAAA
Found at i:76938977 original size:20 final size:20
Alignment explanation
Indices: 76938940--76938997 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 20
76938930 AAAACCCTTG
*
76938940 AAATTTA-AATATTGTTTTGA
1 AAATTTATAA-ATTATTTTGA
*
76938960 AAATTTATAAATTATTTTTA
1 AAATTTATAAATTATTTTGA
* * *
76938980 AACTTTTTAAAATATTTT
1 AAATTTATAAATTATTTT
76938998 TATAAATTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
20 30 0.94
21 2 0.06
ACGTcount: A:0.41, C:0.02, G:0.03, T:0.53
Consensus pattern (20 bp):
AAATTTATAAATTATTTTGA
Found at i:76939007 original size:20 final size:19
Alignment explanation
Indices: 76938954--76939008 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 19
76938944 TTAAATATTG
* *
76938954 TTTTGAAAATTTATAAATTA
1 TTTTTAAAATTT-TAAAATA
*
76938974 TTTTTAAACTTTTTAAAATA
1 TTTTTAAA-ATTTTAAAATA
76938994 TTTTTATAAATTTTA
1 TTTTTA-AAATTTTA
76939009 CATTTTCTGT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
20 24 0.83
21 5 0.17
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (19 bp):
TTTTTAAAATTTTAAAATA
Found at i:76958629 original size:73 final size:73
Alignment explanation
Indices: 76957604--76958632 Score: 1652
Period size: 73 Copynumber: 14.2 Consensus size: 73
76957594 GAGTTAAGCC
* * * * ** *
76957604 TTTT-AATTTATGTTTTTCAAAA-TCAATTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACG
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
*
76957667 CTGAGGTA
66 TTGAGGTA
* * * *
76957675 ATTT-AATTTCTG-TTGTTAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTGCTT-TT-CAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
*
76957738 CGCTGAGGTA
64 CGTTGAGGTA
* * *
76957748 ATTTCAATTTCT-ATTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
76957812 -TGAGGTA
66 TTGAGGTA
*
76957819 ATTTCAATTTCTG--TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
76957882 TTGAGGTA
66 TTGAGGTA
*
76957890 ATTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
76957954 TTGAGGTA
66 TTGAGGTA
* *
76957962 TTTTCAATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCATCAAGACACG
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
76958027 TTGAGGTA
66 TTGAGGTA
* *
76958035 TTTTCAATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACG
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
*
76958100 CTGAGGTA
66 TTGAGGTA
76958108 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
76958173 TTGAGGTA
66 TTGAGGTA
*
76958181 ATTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
76958245 TTGAGGTA
66 TTGAGGTA
*
76958253 TTTTCAATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
76958318 TTGAGGTA
66 TTGAGGTA
*
76958326 ATTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
76958390 TTGAGGTA
66 TTGAGGTA
*
76958398 TTTTCAATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
76958463 TTGAGGTA
66 TTGAGGTA
* *
76958471 ATTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACA
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
76958535 TTGAGGTA
66 TTGAGGTA
* *
76958543 TTTTCAATTTCTGCTTTTCAAAACTT-AACTCATATTGCGAGAGATGAGTTGAGCCTCAAGGCAC
1 TTTTCAATTTCTGCTTTTCAAAA-TTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
*
76958607 GCTGAGGTA
65 GTTGAGGTA
76958616 TTTTCAATTTCTGCTTT
1 TTTTCAATTTCTGCTTT
76958633 ACTAATTCTA
Statistics
Matches: 909, Mismatches: 36, Indels: 24
0.94 0.04 0.02
Matches are distributed among these distances:
70 51 0.06
71 51 0.06
72 327 0.36
73 469 0.52
74 11 0.01
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (73 bp):
TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
TTGAGGTA
Found at i:76958640 original size:145 final size:145
Alignment explanation
Indices: 76957608--76958628 Score: 1696
Period size: 145 Copynumber: 7.1 Consensus size: 145
76957598 TAAGCCTTTT
* * * ** * *
76957608 AATTTATGTTTTTCAAAA-TCAATTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
* * * *
76957672 GTAATTT-AATTTCTG-TTGTTAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGG
65 GTATTTTCAATTTCTGCTT-TT-CAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG
*
76957735 ACACGCTGAGGTAATTTC
128 ACACGTTGAGGTAATTTC
* *
76957753 AATTTCTATTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACG-TGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
76957817 TAATTTCAATTTCTG--TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
66 TATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
76957880 CGTTGAGGTAATTTC
131 CGTTGAGGTAATTTC
76957895 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
* *
76957960 TATTTTCAATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCATCAAGACA
66 TATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
*
76958025 CGTTGAGGTATTTTC
131 CGTTGAGGTAATTTC
* * *
76958040 AATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
76958105 GTATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAC
65 GTATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAC
76958170 ACGTTGAGGTAATTTC
130 ACGTTGAGGTAATTTC
76958186 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
76958251 TATTTTCAATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
66 TATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
76958316 CGTTGAGGTAATTTC
131 CGTTGAGGTAATTTC
76958331 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
76958396 TATTTTCAATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
66 TATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
76958461 CGTTGAGGTAATTTC
131 CGTTGAGGTAATTTC
*
76958476 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
* *
76958541 TATTTTCAATTTCTGCTTTTCAAAACTT-AACTCATATTGCGAGAGATGAGTTGAGCCTCAAGGC
66 TATTTTCAATTTCTGCTTTTCAAAA-TTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAC
* *
76958605 ACGCTGAGGTATTTTC
130 ACGTTGAGGTAATTTC
76958621 AATTTCTG
1 AATTTCTG
76958629 CTTTACTAAT
Statistics
Matches: 835, Mismatches: 34, Indels: 14
0.95 0.04 0.02
Matches are distributed among these distances:
142 113 0.14
143 21 0.03
144 21 0.03
145 539 0.65
146 141 0.17
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.33
Consensus pattern (145 bp):
AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
TATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
CGTTGAGGTAATTTC
Found at i:76958734 original size:14 final size:14
Alignment explanation
Indices: 76958712--76958744 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
76958702 TCTTTTCAAA
76958712 TTCTG-TTTTTAAT
1 TTCTGTTTTTTAAT
76958725 TTCTGTTTTTTAAT
1 TTCTGTTTTTTAAT
76958739 TTCTGT
1 TTCTGT
76958745 GTTTCAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 5 0.26
14 14 0.74
ACGTcount: A:0.12, C:0.09, G:0.09, T:0.70
Consensus pattern (14 bp):
TTCTGTTTTTTAAT
Found at i:76958734 original size:86 final size:87
Alignment explanation
Indices: 76958543--76958734 Score: 214
Period size: 86 Copynumber: 2.2 Consensus size: 87
76958533 CATTGAGGTA
* * * *
76958543 TTTTCAATTTCTGCTTTTCAAAACTTAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGGCACG
1 TTTTTAATTTCTGTTTTTCAAAACTCAACTCATATTGCAAGAGATGAGTTGAGCCTCAAGGCACG
*
76958608 CTGAGGTATTTTCAATTTCTGC
66 CTGAGGTATTTTCAAATTCTGC
* * * *
76958630 TTTACTAA-TTCTACTTTTTC-AAA-TCAACTCATATTGCAAGAGGTGAGTTGAGTCTC-AGGCC
1 TTT-TTAATTTCT-GTTTTTCAAAACTCAACTCATATTGCAAGAGATGAGTTGAGCCTCAAGG--
*
76958691 ACACGCTGAGGTCTTTTCAAATTCTG-
62 -CACGCTGAGGTATTTTCAAATTCTGC
76958717 TTTTTAATTTCTGTTTTT
1 TTTTTAATTTCTGTTTTT
76958735 TAATTTCTGT
Statistics
Matches: 87, Mismatches: 12, Indels: 13
0.78 0.11 0.12
Matches are distributed among these distances:
85 3 0.03
86 37 0.43
87 17 0.20
88 30 0.34
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.40
Consensus pattern (87 bp):
TTTTTAATTTCTGTTTTTCAAAACTCAACTCATATTGCAAGAGATGAGTTGAGCCTCAAGGCACG
CTGAGGTATTTTCAAATTCTGC
Found at i:76958839 original size:53 final size:54
Alignment explanation
Indices: 76958758--76959006 Score: 377
Period size: 53 Copynumber: 4.7 Consensus size: 54
76958748 TCAAAAAAAA
* *
76958758 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTATTTTTC
76958812 AAAAATCAA-TCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTATTTTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTATTTTTC
*
76958865 -AAAACCAACTCATATTGCGAGAGGTGAGTTGAGCC--TT--TTTCTATTTTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTATTTTTC
* *
76958914 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTGCAAATTCT-GTTTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTT--AATTTCTATTTTTC
*
76958969 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
76959007 GGCTCACGTG
Statistics
Matches: 180, Mismatches: 7, Indels: 15
0.89 0.03 0.07
Matches are distributed among these distances:
49 12 0.07
50 34 0.19
51 2 0.01
52 9 0.05
53 68 0.38
54 9 0.05
55 42 0.23
56 4 0.02
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (54 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTATTTTTC
Found at i:76959275 original size:13 final size:13
Alignment explanation
Indices: 76959259--76959283 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
76959249 AAATTTCAAA
76959259 AAAAAAAAAATTT
1 AAAAAAAAAATTT
76959272 AAAAAAAAAATT
1 AAAAAAAAAATT
76959284 GCATTTTGAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (13 bp):
AAAAAAAAAATTT
Found at i:76959275 original size:16 final size:17
Alignment explanation
Indices: 76959248--76959281 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
76959238 TTTAATTTTC
76959248 AAAATTTCAAAAAAAAA
1 AAAATTTCAAAAAAAAA
76959265 AAAATTT-AAAAAAAAA
1 AAAATTTCAAAAAAAAA
76959281 A
1 A
76959282 TTGCATTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (17 bp):
AAAATTTCAAAAAAAAA
Found at i:76959319 original size:30 final size:30
Alignment explanation
Indices: 76959279--76959380 Score: 127
Period size: 30 Copynumber: 3.4 Consensus size: 30
76959269 TTTAAAAAAA
* *
76959279 AAATTGCATTTTGACACC-TAAACTTTTC-CT
1 AAATTTCATTTTGAC-CCTTAAAC-TTTCATT
*
76959309 AAATTTCATTTTGACCCTTAAACTTTCTTT
1 AAATTTCATTTTGACCCTTAAACTTTCATT
* *
76959339 AAATTTCACTTAGACCCTTAAACTTTCATT
1 AAATTTCATTTTGACCCTTAAACTTTCATT
76959369 AAATTTCATTTT
1 AAATTTCATTTT
76959381 AATCCTAAAT
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
29 6 0.10
30 57 0.90
ACGTcount: A:0.30, C:0.21, G:0.04, T:0.45
Consensus pattern (30 bp):
AAATTTCATTTTGACCCTTAAACTTTCATT
Found at i:76959658 original size:10 final size:10
Alignment explanation
Indices: 76959639--76959688 Score: 59
Period size: 10 Copynumber: 5.2 Consensus size: 10
76959629 TTTTTCGAAG
*
76959639 GAAAAAAGAA
1 GAAAAGAGAA
76959649 GAAAAGAGAA
1 GAAAAGAGAA
76959659 GAAAAGAGAA
1 GAAAAGAGAA
* *
76959669 -AGAGGAGAA
1 GAAAAGAGAA
76959678 GAAAAGA-AA
1 GAAAAGAGAA
76959687 GA
1 GA
76959689 GTACCGGCGT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
9 11 0.32
10 23 0.68
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (10 bp):
GAAAAGAGAA
Found at i:76959689 original size:17 final size:19
Alignment explanation
Indices: 76959642--76959684 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
76959632 TTCGAAGGAA
76959642 AAAAGAAGAAA-A-GAGAAG
1 AAAAG-AGAAAGAGGAGAAG
76959660 AAAAGAGAAAGAGGAGAAG
1 AAAAGAGAAAGAGGAGAAG
76959679 AAAAGA
1 AAAAGA
76959685 AAGAGTACCG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 5 0.22
18 6 0.26
19 12 0.52
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (19 bp):
AAAAGAGAAAGAGGAGAAG
Found at i:76959750 original size:3 final size:3
Alignment explanation
Indices: 76959744--76959789 Score: 58
Period size: 3 Copynumber: 15.0 Consensus size: 3
76959734 GCTAGACTTT
*
76959744 GAA GAA GAA GAA GGAA GAA GAA GGAA GAA GAA -AA GAG GAA GAA GAA
1 GAA GAA GAA GAA -GAA GAA GAA -GAA GAA GAA GAA GAA GAA GAA GAA
76959790 AGAAAGAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
2 2 0.05
3 30 0.79
4 6 0.16
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:76959762 original size:10 final size:10
Alignment explanation
Indices: 76959747--76959775 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
76959737 AGACTTTGAA
76959747 GAAGAAGAAG
1 GAAGAAGAAG
76959757 GAAGAAGAAG
1 GAAGAAGAAG
76959767 GAAGAAGAA
1 GAAGAAGAA
76959776 AAGAGGAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (10 bp):
GAAGAAGAAG
Found at i:76959762 original size:13 final size:13
Alignment explanation
Indices: 76959744--76959789 Score: 62
Period size: 13 Copynumber: 3.7 Consensus size: 13
76959734 GCTAGACTTT
76959744 GAAGAAGAAGAAG
1 GAAGAAGAAGAAG
76959757 GAAGAAGAAGGAA-
1 GAAGAAGAA-GAAG
76959770 GAAGAA-AAG-AG
1 GAAGAAGAAGAAG
76959781 GAAGAAGAA
1 GAAGAAGAA
76959790 AGAAAGAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
10 1 0.03
11 7 0.23
12 4 0.13
13 15 0.50
14 3 0.10
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (13 bp):
GAAGAAGAAGAAG
Found at i:76959801 original size:24 final size:24
Alignment explanation
Indices: 76959744--76959802 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 24
76959734 GCTAGACTTT
*
76959744 GAAGAAGAAGAAGGAAGAAGAAGGAA
1 GAAGAA-AAG-AGGAAGAAGAAGAAA
76959770 GAAGAAAAGAGGAAGAAGAAAGAAA
1 GAAGAAAAGAGGAAGAAG-AAGAAA
*
76959795 GAAAAAAA
1 GAAGAAAA
76959803 AAAGAAATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
24 9 0.30
25 15 0.50
26 6 0.20
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (24 bp):
GAAGAAAAGAGGAAGAAGAAGAAA
Found at i:76959931 original size:16 final size:16
Alignment explanation
Indices: 76959912--76959942 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
76959902 GAAACAAGCC
*
76959912 CAAAAAAAAATCAAAG
1 CAAAAAAAAAGCAAAG
76959928 CAAAAAAAAAGCAAA
1 CAAAAAAAAAGCAAA
76959943 AAAAGAAGGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.77, C:0.13, G:0.06, T:0.03
Consensus pattern (16 bp):
CAAAAAAAAAGCAAAG
Found at i:76960092 original size:8 final size:8
Alignment explanation
Indices: 76960081--76960135 Score: 78
Period size: 8 Copynumber: 7.0 Consensus size: 8
76960071 CCCAGCAGAA
76960081 AAAAAAAG
1 AAAAAAAG
76960089 -AAAAAAG
1 AAAAAAAG
76960096 -AAAAAAG
1 AAAAAAAG
*
76960103 GAAAAAAG
1 AAAAAAAG
76960111 AAAAAAAG
1 AAAAAAAG
76960119 AAAAAAAG
1 AAAAAAAG
76960127 AAGAAAAAG
1 AA-AAAAAG
76960136 GGGGTTCAAT
Statistics
Matches: 44, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
7 14 0.32
8 24 0.55
9 6 0.14
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (8 bp):
AAAAAAAG
Found at i:76960094 original size:7 final size:7
Alignment explanation
Indices: 76960082--76960124 Score: 68
Period size: 7 Copynumber: 5.9 Consensus size: 7
76960072 CCAGCAGAAA
76960082 AAAAAAG
1 AAAAAAG
76960089 AAAAAAG
1 AAAAAAG
76960096 AAAAAAGG
1 AAAAAA-G
76960104 AAAAAAG
1 AAAAAAG
76960111 AAAAAAAG
1 -AAAAAAG
76960119 AAAAAA
1 AAAAAA
76960125 AGAAGAAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
7 20 0.59
8 14 0.41
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:76960101 original size:15 final size:15
Alignment explanation
Indices: 76960081--76960135 Score: 83
Period size: 15 Copynumber: 3.5 Consensus size: 15
76960071 CCCAGCAGAA
76960081 AAAAAAAGAAAAAAG
1 AAAAAAAGAAAAAAG
*
76960096 AAAAAAGGAAAAAAG
1 AAAAAAAGAAAAAAG
76960111 AAAAAAAGAAAAAAAG
1 AAAAAAAG-AAAAAAG
76960127 AAGAAAAAG
1 AA-AAAAAG
76960136 GGGGTTCAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
15 21 0.58
16 9 0.25
17 6 0.17
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (15 bp):
AAAAAAAGAAAAAAG
Found at i:76960700 original size:18 final size:19
Alignment explanation
Indices: 76960675--76960730 Score: 62
Period size: 18 Copynumber: 3.1 Consensus size: 19
76960665 GAAATTTTCG
**
76960675 AATTTTCGCGTTT-TCAAA
1 AATTTTCGCGTTTGAAAAA
* *
76960693 AGTTTTCGTGTTTGAAAAA
1 AATTTTCGCGTTTGAAAAA
76960712 AATTTTCGCGTTT-AAAAA
1 AATTTTCGCGTTTGAAAAA
76960730 A
1 A
76960731 TTTCTCGTAT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
18 17 0.55
19 14 0.45
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.41
Consensus pattern (19 bp):
AATTTTCGCGTTTGAAAAA
Found at i:76960748 original size:37 final size:37
Alignment explanation
Indices: 76960675--76960748 Score: 96
Period size: 37 Copynumber: 2.0 Consensus size: 37
76960665 GAAATTTTCG
* * * *
76960675 AATTTTCGCGTTTTCAAAAGTTTTCGTGTTTGAAAAA
1 AATTTTCGCGTTTTAAAAAATTTTCGTATTTCAAAAA
76960712 AATTTTCGCG-TTTAAAAAATTTCTCGTATTTCAAAAA
1 AATTTTCGCGTTTTAAAAAATTT-TCGTATTTCAAAAA
76960749 TTGTCGTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
36 10 0.31
37 22 0.69
ACGTcount: A:0.34, C:0.12, G:0.12, T:0.42
Consensus pattern (37 bp):
AATTTTCGCGTTTTAAAAAATTTTCGTATTTCAAAAA
Found at i:76960849 original size:16 final size:16
Alignment explanation
Indices: 76960798--76960851 Score: 56
Period size: 16 Copynumber: 3.2 Consensus size: 16
76960788 CGTGCTTTTA
76960798 AAAATTCTCA-TGTTTC
1 AAAATTCT-AGTGTTTC
* *
76960814 AAAAATCTTCGTGTTTTC
1 AAAATTC-TAGTG-TTTC
76960832 AAAATTCTAGTGTTTC
1 AAAATTCTAGTGTTTC
76960848 AAAA
1 AAAA
76960852 ATTTTCTTGT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
16 14 0.45
17 7 0.23
18 10 0.32
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.41
Consensus pattern (16 bp):
AAAATTCTAGTGTTTC
Found at i:76960867 original size:18 final size:18
Alignment explanation
Indices: 76960675--76961110 Score: 164
Period size: 17 Copynumber: 24.5 Consensus size: 18
76960665 GAAATTTTCG
*
76960675 AATTTTCGCGTTTTCAAA
1 AATTTTCGTGTTTTCAAA
* **
76960693 AGTTTTCGTGTTTGAAAAA
1 AATTTTCGTGTTT-TCAAA
* *
76960712 AATTTTCGCG-TTTAAAA
1 AATTTTCGTGTTTTCAAA
*
76960729 AATTTCTCGT-ATTTCAAA
1 AATTT-TCGTGTTTTCAAA
* * *
76960747 AATTGTCGT-TTTTTATA
1 AATTTTCGTGTTTTCAAA
* * *
76960764 AATCTTCGTGCTTTCAAT
1 AATTTTCGTGTTTTCAAA
**
76960782 AATCCTCGTGCTTTT-AAA
1 AATTTTCGTG-TTTTCAAA
* *
76960800 AATTCTCATG-TTTCAAA
1 AATTTTCGTGTTTTCAAA
*
76960817 AATCTTCGTGTTTTC-AA
1 AATTTTCGTGTTTTCAAA
* *
76960834 AATTCTAGTG-TTTCAAA
1 AATTTTCGTGTTTTCAAA
*
76960851 AATTTTCTTGTTTTCAAAAA
1 AATTTTCGTGTTTTC--AAA
* *
76960871 AAATTTCGTGTTTTAAAAAAA
1 AATTTTCGTGTTTT---CAAA
76960892 AATATTTCCGTGTTTT-AAA
1 AAT-TTT-CGTGTTTTCAAA
76960911 AATTTTCGTGTTTT-AAA
1 AATTTTCGTGTTTTCAAA
* *
76960928 AATTCTCGT-ATTT--AA
1 AATTTTCGTGTTTTCAAA
*
76960943 AATTTT--T-TTTTAAGAAA
1 AATTTTCGTGTTTT--CAAA
*
76960960 AAATTT--TG-TTTCAAAA
1 AATTTTCGTGTTTTC-AAA
* * *
76960976 AAATGTCTTGTTTT-AAA
1 AATTTTCGTGTTTTCAAA
**
76960993 AATTCCCGTG-TTTCAAAAAA
1 AATTTTCGTGTTTTC---AAA
* *
76961013 AAATGTCGTGTTTT-AAGA
1 AATTTTCGTGTTTTCAA-A
* *
76961031 AAATTTCGTTTTTTTCCAAA
1 AATTTTCG-TGTTTT-CAAA
*
76961051 AATTTTCGTG-TTTCTAA
1 AATTTTCGTGTTTTCAAA
* *
76961068 AATATTCGTG-TTT-ACA
1 AATTTTCGTGTTTTCAAA
*
76961084 AATTCTCGTGTTTTCAAA
1 AATTTTCGTGTTTTCAAA
*
76961102 AATTCTCGT
1 AATTTTCGT
76961111 ATTTAAAAAA
Statistics
Matches: 320, Mismatches: 62, Indels: 72
0.70 0.14 0.16
Matches are distributed among these distances:
13 4 0.01
15 7 0.02
16 30 0.09
17 112 0.35
18 84 0.26
19 29 0.09
20 33 0.10
21 10 0.03
22 3 0.01
23 8 0.03
ACGTcount: A:0.32, C:0.12, G:0.11, T:0.45
Consensus pattern (18 bp):
AATTTTCGTGTTTTCAAA
Found at i:76960874 original size:21 final size:20
Alignment explanation
Indices: 76960848--76960929 Score: 91
Period size: 20 Copynumber: 4.1 Consensus size: 20
76960838 CTAGTGTTTC
*
76960848 AAAAATTTTCTTGTTTTCAAA
1 AAAAATTTTCGTGTTTT-AAA
76960869 AAAAA-TTTCGTGTTTTAAAA
1 AAAAATTTTCGTGTTTT-AAA
76960889 AAAAATATTTCCGTGTTTT---
1 AAAAAT-TTT-CGTGTTTTAAA
76960908 AAAAATTTTCGTGTTTTAAA
1 AAAAATTTTCGTGTTTTAAA
76960928 AA
1 AA
76960930 TTCTCGTATT
Statistics
Matches: 53, Mismatches: 2, Indels: 13
0.78 0.03 0.19
Matches are distributed among these distances:
17 8 0.15
18 3 0.06
19 6 0.11
20 20 0.38
21 5 0.09
22 3 0.06
23 8 0.15
ACGTcount: A:0.40, C:0.07, G:0.09, T:0.44
Consensus pattern (20 bp):
AAAAATTTTCGTGTTTTAAA
Found at i:76960888 original size:17 final size:17
Alignment explanation
Indices: 76960696--76961120 Score: 114
Period size: 18 Copynumber: 24.0 Consensus size: 17
76960686 TTTCAAAAGT
*
76960696 TTTCGTGTTTGAAAAAAA
1 TTTCGTGTTT-TAAAAAA
*
76960714 TTTTCGCG-TTTAAAAAA
1 -TTTCGTGTTTTAAAAAA
*
76960731 TTTC-TCGTATTTCAAAAA
1 TTTCGT-GT-TTTAAAAAA
* *
76960749 TTGTCGT-TTTTTATAAA
1 TT-TCGTGTTTTAAAAAA
* * *
76960766 TCTTCGTGCTTTCAATAA
1 T-TTCGTGTTTTAAAAAA
*
76960784 TCCTCGTGCTTTT-AAAAA
1 T-TTCGTG-TTTTAAAAAA
* *
76960802 TTCTCATG-TTTCAAAAA
1 TT-TCGTGTTTTAAAAAA
*
76960819 TCTTCGTGTTTT-CAAAA
1 T-TTCGTGTTTTAAAAAA
* * *
76960836 TTCTAGTGTTTCAAAAAT
1 TT-TCGTGTTTTAAAAAA
*
76960854 TTTCTTGTTTTCAAAAAAAA
1 TTTCGTGTTTT---AAAAAA
76960874 TTTCGTGTTTTAAAAAAAAATA
1 TTTCGTGTTTT----AAAAA-A
*
76960896 TTTCCGTGTTTTAAAAAT
1 TTT-CGTGTTTTAAAAAA
76960914 TTTCGTGTTTT-AAAAA
1 TTTCGTGTTTTAAAAAA
*
76960930 TTCTCGT-ATTT--AAAA
1 TT-TCGTGTTTTAAAAAA
*
76960945 TTT--TTTTTTAAGAAAAAA
1 TTTCGTGTTTT---AAAAAA
*
76960963 TTT--TGTTTCAAAAAAA
1 TTTCGTGTTT-TAAAAAA
* *
76960979 TGTCTTGTTTT-AAAAA
1 TTTCGTGTTTTAAAAAA
* *
76960995 TTCCCGTGTTTCAAAAAAAAA
1 TT-TCGTGTTT---TAAAAAA
*
76961016 TGTCGTGTTTTAAGAAAA
1 TTTCGTGTTTTAA-AAAA
* *
76961034 TTTCGTTTTTTTCCAAAAAT
1 TTTCG-TGTTTT--AAAAAA
*
76961054 TTTCGTGTTTCTAAAATA
1 TTTCGTGTTT-TAAAAAA
*
76961072 -TTCGTG-TTT-ACAAA
1 TTTCGTGTTTTAAAAAA
*
76961086 TTCTCGTGTTTTCAAAAA
1 TT-TCGTGTTTTAAAAAA
*
76961104 TTCTCGT-ATTTAAAAAA
1 TT-TCGTGTTTTAAAAAA
76961121 AAACTTTCGT
Statistics
Matches: 309, Mismatches: 53, Indels: 90
0.68 0.12 0.20
Matches are distributed among these distances:
12 1 0.00
13 3 0.01
14 4 0.01
15 8 0.03
16 39 0.13
17 83 0.27
18 87 0.28
19 25 0.08
20 32 0.10
21 15 0.05
22 4 0.01
23 8 0.03
ACGTcount: A:0.33, C:0.12, G:0.10, T:0.45
Consensus pattern (17 bp):
TTTCGTGTTTTAAAAAA
Found at i:76960891 original size:22 final size:23
Alignment explanation
Indices: 76960866--76960912 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
76960856 TCTTGTTTTC
76960866 AAAAAAAATTT-CGTGTTTTAAA
1 AAAAAAAATTTCCGTGTTTTAAA
*
76960888 AAAAAATATTTCCGTGTTTTAAA
1 AAAAAAAATTTCCGTGTTTTAAA
76960911 AA
1 AA
76960913 TTTTCGTGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 10 0.43
23 13 0.57
ACGTcount: A:0.49, C:0.06, G:0.09, T:0.36
Consensus pattern (23 bp):
AAAAAAAATTTCCGTGTTTTAAA
Found at i:76961092 original size:16 final size:16
Alignment explanation
Indices: 76961048--76961119 Score: 65
Period size: 17 Copynumber: 4.3 Consensus size: 16
76961038 GTTTTTTTCC
*
76961048 AAAAATTTTCGTGTTT
1 AAAAATTCTCGTGTTT
*
76961064 CTAAAATAT-TCGTGTTT
1 -AAAAAT-TCTCGTGTTT
*
76961081 ACAAATTCTCGTGTTTT
1 AAAAATTCTCGTG-TTT
*
76961098 CAAAAATTCTCGTATTT
1 -AAAAATTCTCGTGTTT
76961115 AAAAA
1 AAAAA
76961120 AAAACTTTCG
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
15 1 0.02
16 14 0.30
17 19 0.41
18 12 0.26
ACGTcount: A:0.35, C:0.12, G:0.10, T:0.43
Consensus pattern (16 bp):
AAAAATTCTCGTGTTT
Found at i:76962101 original size:14 final size:15
Alignment explanation
Indices: 76962076--76962104 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
76962066 ACATTCAATT
76962076 AATCAGTTCATAACA
1 AATCAGTTCATAACA
76962091 AATCA-TTCATAACA
1 AATCAGTTCATAACA
76962105 TATTCAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.48, C:0.21, G:0.03, T:0.28
Consensus pattern (15 bp):
AATCAGTTCATAACA
Found at i:76963330 original size:13 final size:13
Alignment explanation
Indices: 76963312--76963341 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
76963302 GTTTCTTTTC
*
76963312 TATTTTATTTATT
1 TATTTTATTTAAT
76963325 TATTTTATTTAAT
1 TATTTTATTTAAT
76963338 TATT
1 TATT
76963342 ATAATATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (13 bp):
TATTTTATTTAAT
Found at i:76963383 original size:41 final size:42
Alignment explanation
Indices: 76963329--76963411 Score: 116
Period size: 41 Copynumber: 2.0 Consensus size: 42
76963319 TTTATTTATT
*
76963329 TTATTTAATTATTATAATATATA-CTTAACTTTTAAGTTTTA
1 TTATTTAATTATTATAATATATATCTTAACTTTAAAGTTTTA
* *
76963370 TTATTATAA-TATTATAATATATATTTTAACTTTAAATTTTTA
1 TTATT-TAATTATTATAATATATATCTTAACTTTAAAGTTTTA
76963412 AATAAATGCA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
41 19 0.51
42 18 0.49
ACGTcount: A:0.39, C:0.04, G:0.01, T:0.57
Consensus pattern (42 bp):
TTATTTAATTATTATAATATATATCTTAACTTTAAAGTTTTA
Found at i:76963926 original size:25 final size:25
Alignment explanation
Indices: 76963879--76963926 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
76963869 TCTTGAGCCA
**
76963879 TATAACAGGAAGCTCATGTGAGCTG
1 TATAACAGGAAGCTCATAAGAGCTG
* *
76963904 TATAACGGGAAGCTGATAAGAGC
1 TATAACAGGAAGCTCATAAGAGC
76963927 CATATTTAGG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.35, C:0.15, G:0.29, T:0.21
Consensus pattern (25 bp):
TATAACAGGAAGCTCATAAGAGCTG
Found at i:76964040 original size:24 final size:24
Alignment explanation
Indices: 76964007--76964068 Score: 63
Period size: 24 Copynumber: 2.5 Consensus size: 24
76963997 AGTTATATAT
* *
76964007 ATATCGGGAAG-TTCAAGCGAGCCA
1 ATATCAGGAAGCTTC-AGAGAGCCA
76964031 ATATCAGGAAGCTTCAGAGAGCCA
1 ATATCAGGAAGCTTCAGAGAGCCA
* *
76964055 TTAATTAGGAAGCT
1 AT-ATCAGGAAGCT
76964069 CATAAAGAGC
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
24 19 0.59
25 13 0.41
ACGTcount: A:0.35, C:0.18, G:0.26, T:0.21
Consensus pattern (24 bp):
ATATCAGGAAGCTTCAGAGAGCCA
Found at i:76969788 original size:18 final size:20
Alignment explanation
Indices: 76969765--76969812 Score: 55
Period size: 18 Copynumber: 2.5 Consensus size: 20
76969755 CCACATGAGC
76969765 AATTAAATTAA-T-TTTAAA
1 AATTAAATTAATTATTTAAA
**
76969783 AATTAAAAAAATTATTTAAA
1 AATTAAATTAATTATTTAAA
76969803 AATTTAAATT
1 AA-TTAAATT
76969813 TTAAAAAAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 9 0.39
19 1 0.04
20 8 0.35
21 5 0.22
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (20 bp):
AATTAAATTAATTATTTAAA
Found at i:76969804 original size:21 final size:22
Alignment explanation
Indices: 76969769--76969810 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
76969759 ATGAGCAATT
*
76969769 AAATTAATTTTAAAAATTAAAA
1 AAATTAATTTAAAAAATTAAAA
*
76969791 AAATT-ATTTAAAAATTTAAA
1 AAATTAATTTAAAAAATTAAA
76969811 TTTTAAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (22 bp):
AAATTAATTTAAAAAATTAAAA
Found at i:76969815 original size:35 final size:36
Alignment explanation
Indices: 76969774--76969850 Score: 97
Period size: 36 Copynumber: 2.2 Consensus size: 36
76969764 CAATTAAATT
*
76969774 AATTTT-AAAAA-TTAAAAAAATTATTTAAAAATT-TA
1 AATTTTAAAAAAGTT-AAAAAATTA-TAAAAAATTATA
*
76969809 AATTTTAAAAAAGTTCAAAAATTATAAAAAATTATA
1 AATTTTAAAAAAGTTAAAAAATTATAAAAAATTATA
76969845 AATTTT
1 AATTTT
76969851 TTTAATTTAA
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
35 14 0.38
36 21 0.57
37 2 0.05
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.39
Consensus pattern (36 bp):
AATTTTAAAAAAGTTAAAAAATTATAAAAAATTATA
Found at i:76969820 original size:17 final size:18
Alignment explanation
Indices: 76969800--76969850 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
76969790 AAAATTATTT
76969800 AAAAATTTAAATTTTA-A
1 AAAAATTTAAATTTTATA
* * **
76969817 AAAAGTTCAAAAATTATA
1 AAAAATTTAAATTTTATA
76969835 AAAAATTATAAATTTT
1 AAAAATT-TAAATTTT
76969851 TTTAATTTAA
Statistics
Matches: 24, Mismatches: 8, Indels: 2
0.71 0.24 0.06
Matches are distributed among these distances:
17 12 0.50
18 7 0.29
19 5 0.21
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (18 bp):
AAAAATTTAAATTTTATA
Found at i:76970301 original size:16 final size:17
Alignment explanation
Indices: 76970280--76970313 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
76970270 ATAATTGAAG
*
76970280 TTAAAT-ATATTTTTTA
1 TTAAATGATAATTTTTA
76970296 TTAAATGATAATTTTTA
1 TTAAATGATAATTTTTA
76970313 T
1 T
76970314 CTACTTATCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (17 bp):
TTAAATGATAATTTTTA
Found at i:76973434 original size:16 final size:15
Alignment explanation
Indices: 76973402--76973431 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
76973392 ACTATTGGTA
76973402 ATTTTTTAAATATTT
1 ATTTTTTAAATATTT
*
76973417 ATTTTTTTAATATTT
1 ATTTTTTAAATATTT
76973432 TATCATACTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (15 bp):
ATTTTTTAAATATTT
Found at i:76980969 original size:46 final size:46
Alignment explanation
Indices: 76980902--76981074 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
76980892 AACCCGCCCC
* *
76980902 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCA
* * *
76980948 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-ATTTGCATCCA
* * *
76980996 TCAAG-AAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 T-AAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCA
*
76981042 TAGGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
76981075 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 13, Indels: 16
0.79 0.10 0.12
Matches are distributed among these distances:
44 5 0.05
45 3 0.03
46 60 0.57
48 29 0.27
49 4 0.04
50 5 0.05
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCA
Found at i:76981017 original size:94 final size:94
Alignment explanation
Indices: 76980908--76981078 Score: 297
Period size: 94 Copynumber: 1.8 Consensus size: 94
76980898 CCCCTAAGTG
* * *
76980908 AACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
76980973 GAGTTCGGATGCCTAGTTACATTTCAAGA
66 GAGTTCGGATGCCTAGTTACATTTCAAGA
* *
76981002 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
76981067 GAGTTCGGATGC
66 GAGTTCGGATGC
76981079 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
94 72 1.00
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (94 bp):
AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATTTCAAGA
Found at i:76990181 original size:25 final size:25
Alignment explanation
Indices: 76990153--76990203 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
76990143 AAATTTACAG
76990153 AGAACTTGCATACGGTAAGATTTCA
1 AGAACTTGCATACGGTAAGATTTCA
76990178 AGAACTTGCATACGGTAAGATTTCA
1 AGAACTTGCATACGGTAAGATTTCA
76990203 A
1 A
76990204 CCTAAAATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.37, C:0.16, G:0.20, T:0.27
Consensus pattern (25 bp):
AGAACTTGCATACGGTAAGATTTCA
Found at i:76994406 original size:21 final size:21
Alignment explanation
Indices: 76994382--76994423 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
76994372 GATTCTCTAT
*
76994382 GAGTTTACTGTAAGATCCATG
1 GAGTATACTGTAAGATCCATG
* *
76994403 GAGTATACTGTGAGGTCCATG
1 GAGTATACTGTAAGATCCATG
76994424 AGATCCATTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (21 bp):
GAGTATACTGTAAGATCCATG
Found at i:76994828 original size:19 final size:19
Alignment explanation
Indices: 76994791--76994844 Score: 65
Period size: 19 Copynumber: 2.9 Consensus size: 19
76994781 TAGAAAGTTG
* *
76994791 TAAAAATTATTTAAA-AAT
1 TAAAAAATATTAAAATAAT
*
76994809 TAAAAACTATTAAAATAAT
1 TAAAAAATATTAAAATAAT
*
76994828 TAAAAAATATAAAAATA
1 TAAAAAATATTAAAATA
76994845 TATTTTTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
18 13 0.42
19 18 0.58
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (19 bp):
TAAAAAATATTAAAATAAT
Found at i:76995047 original size:27 final size:27
Alignment explanation
Indices: 76994995--76995047 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
76994985 GTGAAATTTT
* *
76994995 AAATAAAAACTAAAATATATTTTTATA
1 AAATAAAAACTAAAATATAATATTATA
*
76995022 AAATAAAAAGGTAAAATA-AATATTAT
1 AAATAAAAA-CTAAAATATAATATTAT
76995048 GCCAAATATA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 15 0.68
28 7 0.32
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.32
Consensus pattern (27 bp):
AAATAAAAACTAAAATATAATATTATA
Found at i:76998857 original size:17 final size:16
Alignment explanation
Indices: 76998837--76998892 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 16
76998827 GTTTATTTAA
76998837 TTTTTATTATTATTTTG
1 TTTTT-TTATTATTTTG
*
76998854 TTTTCTTTATTATAATTG
1 TTTT-TTTATTAT-TTTG
*
76998872 TTTTTTTATATATTTTC
1 TTTTTTTAT-TATTTTG
76998889 TTTT
1 TTTT
76998893 ATTTTATCGT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
17 22 0.67
18 11 0.33
ACGTcount: A:0.18, C:0.04, G:0.04, T:0.75
Consensus pattern (16 bp):
TTTTTTTATTATTTTG
Found at i:76998931 original size:3 final size:3
Alignment explanation
Indices: 76998923--76999000 Score: 77
Period size: 3 Copynumber: 25.0 Consensus size: 3
76998913 TATTTTAATT
* *
76998923 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA GTA TTA GTA TGTCA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-T-A TTA
* *
76998970 TTG TT- TTA TTA TTA TTG TCTCA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA T-T-A TTA TTA TTA
76999001 GTAGTAGCAG
Statistics
Matches: 63, Mismatches: 7, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
2 2 0.03
3 54 0.86
4 4 0.06
5 3 0.05
ACGTcount: A:0.28, C:0.04, G:0.06, T:0.62
Consensus pattern (3 bp):
TTA
Done.