Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 235 of 255
Found at i:77211470 original size:30 final size:30
Alignment explanation
Indices: 77211434--77211531 Score: 180
Period size: 30 Copynumber: 3.3 Consensus size: 30
77211424 ACTTTTCTCA
77211434 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
*
77211464 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
77211494 ACTAGCCACT-CTTTTCCACCACCAACTCC
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
77211523 ACTAGCCAC
1 ACTAGCCAC
77211532 ACAACTCCAC
Statistics
Matches: 66, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
29 28 0.42
30 38 0.58
ACGTcount: A:0.26, C:0.49, G:0.04, T:0.21
Consensus pattern (30 bp):
ACTAGCCACTCCTTTTCCACCACCAACTCC
Found at i:77211536 original size:17 final size:17
Alignment explanation
Indices: 77211512--77211550 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
77211502 CTCTTTTCCA
77211512 CCAC-CAACTCCACTAG
1 CCACACAACTCCACTAG
77211528 CCACACAACTCCACTAG
1 CCACACAACTCCACTAG
77211545 CCACAC
1 CCACAC
77211551 CTTTTCCACC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.33, C:0.51, G:0.05, T:0.10
Consensus pattern (17 bp):
CCACACAACTCCACTAG
Found at i:77211544 original size:76 final size:77
Alignment explanation
Indices: 77211453--77211610 Score: 302
Period size: 76 Copynumber: 2.1 Consensus size: 77
77211443 TCCTTTTCCA
77211453 CCAC-CAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACTC-TTTTCCACCAC
1 CCACACAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACTCTTTTTCCACCAC
77211516 CAACTCCACTAG
66 CAACTCCACTAG
77211528 CCACACAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACTCTTTTTCCACCAC
1 CCACACAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACTCTTTTTCCACCAC
77211593 CAACTCCACTAG
66 CAACTCCACTAG
77211605 CCACAC
1 CCACAC
77211611 CTTCTCCACC
Statistics
Matches: 81, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
75 4 0.05
76 48 0.59
77 29 0.36
ACGTcount: A:0.27, C:0.49, G:0.04, T:0.20
Consensus pattern (77 bp):
CCACACAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACTCTTTTTCCACCAC
CAACTCCACTAG
Found at i:77211558 original size:47 final size:45
Alignment explanation
Indices: 77211483--77211578 Score: 165
Period size: 47 Copynumber: 2.1 Consensus size: 45
77211473 ACCTTTTCCA
*
77211483 CCACCAACTCCACTAGCCACTCTTTTCCACCACCAACTCCACTAG
1 CCACCAACTCCACTAGCCACCCTTTTCCACCACCAACTCCACTAG
77211528 CCACACAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAG
1 CCAC-CAACTCCACTAGCCAC-CCTTTTCCACCACCAACTCCACTAG
77211575 CCAC
1 CCAC
77211579 TCTTTTTCCA
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
45 4 0.08
46 16 0.33
47 28 0.58
ACGTcount: A:0.28, C:0.50, G:0.04, T:0.18
Consensus pattern (45 bp):
CCACCAACTCCACTAGCCACCCTTTTCCACCACCAACTCCACTAG
Found at i:77211567 original size:30 final size:30
Alignment explanation
Indices: 77211528--77211624 Score: 158
Period size: 30 Copynumber: 3.2 Consensus size: 30
77211518 ACTCCACTAG
77211528 CCACACAACTCCACTAGCCACACCTTTTCCA
1 CCAC-CAACTCCACTAGCCACACCTTTTCCA
* *
77211559 CCACCAACTCCACTAGCCACTCTTTTTCCA
1 CCACCAACTCCACTAGCCACACCTTTTCCA
*
77211589 CCACCAACTCCACTAGCCACACCTTCTCCA
1 CCACCAACTCCACTAGCCACACCTTTTCCA
77211619 CCACCA
1 CCACCA
77211625 CTTGTACCTA
Statistics
Matches: 61, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
30 57 0.93
31 4 0.07
ACGTcount: A:0.27, C:0.51, G:0.03, T:0.20
Consensus pattern (30 bp):
CCACCAACTCCACTAGCCACACCTTTTCCA
Found at i:77211833 original size:17 final size:18
Alignment explanation
Indices: 77211804--77211840 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
77211794 GAGTTATTGT
77211804 GAAGACTAG-TTTTTGGA
1 GAAGACTAGTTTTTTGGA
77211821 GAAG-CTAGTTTTTTTGGA
1 GAAGACTAG-TTTTTTGGA
77211839 GA
1 GA
77211841 TTAATCAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 4 0.22
17 4 0.22
18 10 0.56
ACGTcount: A:0.27, C:0.05, G:0.30, T:0.38
Consensus pattern (18 bp):
GAAGACTAGTTTTTTGGA
Found at i:77212207 original size:25 final size:25
Alignment explanation
Indices: 77212179--77212317 Score: 97
Period size: 25 Copynumber: 5.5 Consensus size: 25
77212169 ATATTAAGTA
*
77212179 TATATATATTTTATACTATTTTATG
1 TATATATATTTTATACTATATTATG
* * * *
77212204 TATATATCTTTAATATTATATTATT
1 TATATATATTTTATACTATATTATG
* * *
77212229 TATATATATATTTTTAC-ATGTTATCT
1 TATATATAT-TTTATACTATATTAT-G
*
77212255 TATGTATATATCTTA-ACTATATTATG
1 TA--TATATATTTTATACTATATTATG
* *
77212281 TATGTAT-TTTTAACACTATATTATG
1 TATATATATTTT-ATACTATATTATG
*
77212306 TACATAT-TTTTA
1 TATATATATTTTA
77212318 ATATTATCAC
Statistics
Matches: 89, Mismatches: 18, Indels: 15
0.73 0.15 0.12
Matches are distributed among these distances:
23 3 0.03
24 6 0.07
25 54 0.61
26 11 0.12
27 8 0.09
28 7 0.08
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.56
Consensus pattern (25 bp):
TATATATATTTTATACTATATTATG
Found at i:77212216 original size:52 final size:52
Alignment explanation
Indices: 77212155--77212268 Score: 135
Period size: 52 Copynumber: 2.2 Consensus size: 52
77212145 ATATATTAGG
*
77212155 TATAT-TTTAA-ATTTATATTAAGTATATATATATTTTATAC-TATTTTATGTA
1 TATATCTTTAATA-TTATATTAAGTATATATATATTTT-TACTTATCTTATGTA
**
77212206 TATATCTTTAATATTATATTATTTATATATATATTTTTACATGTTATCTTATGTA
1 TATATCTTTAATATTATATTAAGTATATATATATTTTTAC---TTATCTTATGTA
77212261 TATATCTT
1 TATATCTT
77212269 AACTATATTA
Statistics
Matches: 54, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
51 8 0.15
52 27 0.50
53 1 0.02
55 18 0.33
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.58
Consensus pattern (52 bp):
TATATCTTTAATATTATATTAAGTATATATATATTTTTACTTATCTTATGTA
Found at i:77212229 original size:30 final size:28
Alignment explanation
Indices: 77212167--77212268 Score: 77
Period size: 27 Copynumber: 3.7 Consensus size: 28
77212157 TATTTTAAAT
* * * *
77212167 TTATATTAAGTATATATATATT-TTATA
1 TTATTTTATGTATATATCTTTTATTATA
*
77212194 CTATTTTATGTATATATCTTTAATATTATA
1 TTATTTTATGTATATATCTTT--TATTATA
* * *
77212224 TTA-TTTATATATATAT-TTTTA-CATG
1 TTATTTTATGTATATATCTTTTATTATA
*
77212249 TTATCTTATGTATATATCTT
1 TTATTTTATGTATATATCTT
77212269 AACTATATTA
Statistics
Matches: 59, Mismatches: 11, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
25 5 0.08
26 13 0.22
27 18 0.31
28 3 0.05
29 13 0.22
30 7 0.12
ACGTcount: A:0.33, C:0.05, G:0.04, T:0.58
Consensus pattern (28 bp):
TTATTTTATGTATATATCTTTTATTATA
Found at i:77212323 original size:20 final size:20
Alignment explanation
Indices: 77212298--77212353 Score: 60
Period size: 19 Copynumber: 2.8 Consensus size: 20
77212288 TTTTAACACT
77212298 ATATTATGTACATATTTTTA
1 ATATTATGTACATATTTTTA
* * *
77212318 ATATTAT-CACGTATTTTTT
1 ATATTATGTACATATTTTTA
*
77212337 TTATATATGTACATATT
1 ATAT-TATGTACATATT
77212354 GATGTAGTAT
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
19 12 0.43
20 10 0.36
21 6 0.21
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.55
Consensus pattern (20 bp):
ATATTATGTACATATTTTTA
Found at i:77212492 original size:16 final size:14
Alignment explanation
Indices: 77212473--77212506 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 14
77212463 TATTATTCTA
77212473 ATATTTTGATATTTT
1 ATATTTT-ATATTTT
77212488 GATATTTTATATTTT
1 -ATATTTTATATTTT
77212503 ATAT
1 ATAT
77212507 ATTTTATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 4 0.22
15 7 0.39
16 7 0.39
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (14 bp):
ATATTTTATATTTT
Found at i:77212501 original size:7 final size:8
Alignment explanation
Indices: 77212473--77212506 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
77212463 TATTATTCTA
77212473 ATATTTTG
1 ATATTTTG
77212481 ATATTTTG
1 ATATTTTG
77212489 ATATTTT-
1 ATATTTTG
77212496 ATATTTT-
1 ATATTTTG
77212503 ATAT
1 ATAT
77212507 ATTTTATTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 11 0.42
8 15 0.58
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (8 bp):
ATATTTTG
Found at i:77212508 original size:16 final size:15
Alignment explanation
Indices: 77212473--77212513 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 15
77212463 TATTATTCTA
77212473 ATATTTTGATATTTTG
1 ATATTTT-ATATTTTG
*
77212489 ATATTTTATATTTTAT
1 ATATTTTATATTTT-G
77212505 ATATTTTAT
1 ATATTTTAT
77212514 TATTCACATC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 7 0.30
16 16 0.70
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (15 bp):
ATATTTTATATTTTG
Found at i:77217369 original size:14 final size:15
Alignment explanation
Indices: 77217350--77217379 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
77217340 TGCAAGATAA
77217350 AATTATT-ATTTTTT
1 AATTATTAATTTTTT
77217364 AATTATTAATTTTTT
1 AATTATTAATTTTTT
77217379 A
1 A
77217380 TGAATAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (15 bp):
AATTATTAATTTTTT
Found at i:77217874 original size:15 final size:16
Alignment explanation
Indices: 77217850--77217882 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
77217840 AATGAATCAC
77217850 ATAAAAATAT-TAAAT
1 ATAAAAATATGTAAAT
*
77217865 ATAAATATATGTAAAT
1 ATAAAAATATGTAAAT
77217881 AT
1 AT
77217883 TTTAAGATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (16 bp):
ATAAAAATATGTAAAT
Found at i:77227535 original size:42 final size:42
Alignment explanation
Indices: 77227475--77227559 Score: 161
Period size: 42 Copynumber: 2.0 Consensus size: 42
77227465 TTGGTGTTGA
77227475 ATTCAAACTCTTAAAAAAAAAGGCTAAATTGCAACAAAAAGC
1 ATTCAAACTCTTAAAAAAAAAGGCTAAATTGCAACAAAAAGC
*
77227517 ATTCAAACTCTTACAAAAAAAGGCTAAATTGCAACAAAAAGC
1 ATTCAAACTCTTAAAAAAAAAGGCTAAATTGCAACAAAAAGC
77227559 A
1 A
77227560 AAGAGGAGGG
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.54, C:0.18, G:0.09, T:0.19
Consensus pattern (42 bp):
ATTCAAACTCTTAAAAAAAAAGGCTAAATTGCAACAAAAAGC
Found at i:77227553 original size:21 final size:21
Alignment explanation
Indices: 77227489--77227556 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
77227479 AAACTCTTAA
77227489 AAAAAAAGGCTAAATTGCAAC
1 AAAAAAAGGCTAAATTGCAAC
* ** * *
77227510 AAAAAGCATTC-AAACT-CTTAC
1 AAAAA-AAGGCTAAATTGC-AAC
77227531 AAAAAAAGGCTAAATTGCAAC
1 AAAAAAAGGCTAAATTGCAAC
77227552 AAAAA
1 AAAAA
77227557 GCAAAGAGGA
Statistics
Matches: 33, Mismatches: 10, Indels: 8
0.65 0.20 0.16
Matches are distributed among these distances:
20 3 0.09
21 27 0.82
22 3 0.09
ACGTcount: A:0.57, C:0.16, G:0.10, T:0.16
Consensus pattern (21 bp):
AAAAAAAGGCTAAATTGCAAC
Found at i:77227713 original size:23 final size:23
Alignment explanation
Indices: 77227687--77227738 Score: 86
Period size: 23 Copynumber: 2.3 Consensus size: 23
77227677 TAATTTTTAA
*
77227687 ATTTTGAATTATTTAATGATAAT
1 ATTTAGAATTATTTAATGATAAT
*
77227710 ATTTAGAATTATTTAGTGATAAT
1 ATTTAGAATTATTTAATGATAAT
77227733 ATTTAG
1 ATTTAG
77227739 TAAAATTCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (23 bp):
ATTTAGAATTATTTAATGATAAT
Found at i:77228474 original size:13 final size:14
Alignment explanation
Indices: 77228458--77228486 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
77228448 TGTTTACCCA
77228458 TTTATTTTATT-TC
1 TTTATTTTATTATC
77228471 TTTATTTTATTATC
1 TTTATTTTATTATC
77228485 TT
1 TT
77228487 AATCAATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.76
Consensus pattern (14 bp):
TTTATTTTATTATC
Found at i:77240888 original size:26 final size:29
Alignment explanation
Indices: 77240829--77240890 Score: 78
Period size: 27 Copynumber: 2.2 Consensus size: 29
77240819 ATTTTAAAAT
77240829 TAAATTATTTGTAGTTTAGAATTATTTGA
1 TAAATTATTTGTAGTTTAGAATTATTTGA
*
77240858 TAAATT-TTTGT-G-TTAGTAATTATTTTA
1 TAAATTATTTGTAGTTTAG-AATTATTTGA
77240885 -AAATTA
1 TAAATTA
77240891 ATTTATTAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
26 9 0.30
27 10 0.33
28 5 0.17
29 6 0.20
ACGTcount: A:0.35, C:0.00, G:0.11, T:0.53
Consensus pattern (29 bp):
TAAATTATTTGTAGTTTAGAATTATTTGA
Found at i:77243637 original size:21 final size:20
Alignment explanation
Indices: 77243613--77243667 Score: 80
Period size: 18 Copynumber: 2.9 Consensus size: 20
77243603 GGTTTTGTAT
77243613 TGTAAATTACTTTATTTTTTA
1 TGTAAATTACTTT-TTTTTTA
77243634 TGTAAATTAC--TTTTTTTA
1 TGTAAATTACTTTTTTTTTA
77243652 TGTAAATTA-TTTTTTT
1 TGTAAATTACTTTTTTT
77243668 GCATTATATT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
18 16 0.50
19 6 0.19
21 10 0.31
ACGTcount: A:0.27, C:0.04, G:0.05, T:0.64
Consensus pattern (20 bp):
TGTAAATTACTTTTTTTTTA
Found at i:77247547 original size:17 final size:17
Alignment explanation
Indices: 77247525--77247557 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
77247515 TCTTCTTTCT
77247525 TTCTTCACTGCTTCACA
1 TTCTTCACTGCTTCACA
*
77247542 TTCTTCATTGCTTCAC
1 TTCTTCACTGCTTCAC
77247558 TGCACGGTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.33, G:0.06, T:0.45
Consensus pattern (17 bp):
TTCTTCACTGCTTCACA
Found at i:77257422 original size:22 final size:22
Alignment explanation
Indices: 77257396--77257440 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
77257386 TTCTCTTTTT
77257396 TCCCATTCAAACTTATTTCTTC
1 TCCCATTCAAACTTATTTCTTC
77257418 TCCCATTCAAACTTATTTCTTC
1 TCCCATTCAAACTTATTTCTTC
77257440 T
1 T
77257441 TCCTCTCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.22, C:0.31, G:0.00, T:0.47
Consensus pattern (22 bp):
TCCCATTCAAACTTATTTCTTC
Found at i:77260151 original size:19 final size:19
Alignment explanation
Indices: 77260127--77260180 Score: 90
Period size: 19 Copynumber: 2.8 Consensus size: 19
77260117 AATCTTTAAG
77260127 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
77260146 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* *
77260165 GATACGCAATTTTAGA
1 GATATGCAATCTTAGA
77260181 AATGGTTTCA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:77265113 original size:7 final size:7
Alignment explanation
Indices: 77265098--77265128 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
77265088 CTTCTATTTC
77265098 AAAAA-A
1 AAAAAGA
77265104 AAAAAGA
1 AAAAAGA
77265111 AAAAAGA
1 AAAAAGA
77265118 AAAAAGA
1 AAAAAGA
77265125 AAAA
1 AAAA
77265129 TAGAGAGGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 5 0.21
7 19 0.79
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (7 bp):
AAAAAGA
Found at i:77266071 original size:44 final size:44
Alignment explanation
Indices: 77266011--77266467 Score: 319
Period size: 44 Copynumber: 10.4 Consensus size: 44
77266001 CAAAGAAACA
* *
77266011 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAATATAGC
1 AGATCTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* * * * * **
77266055 AGATCTGTCATTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTC
1 AGATCTGGCATCCCTGTGTTTATAGGGAA-CAGATCGAAGATAGC
* *
77266100 AG--CATGGCATCCCTGTATTTATAGGGAACA-AGTTGAAGATAGC
1 AGATC-TGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
* *
77266143 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAAC
1 AGATCTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* * * * * * **
77266187 AGATCTGACA-CTCATGTGCTTACAGCGAAGCAGATCGAGGATTTC
1 AGATCTGGCATC-CCTGTGTTTATAGGGAA-CAGATCGAAGATAGC
**
77266232 AG--CATGGCATCCCTGTGTTTATAGGGAACA-AGTTAAAGATAGC
1 AGATC-TGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
* **
77266275 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAAT
1 AGATCTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* * * * **
77266319 AGATCTGACA-CTCCTGTGCTTACAGCGAAGCAGATC-AAGGATTTC
1 AGATCTGGCATC-CCTGTGTTTATAGGGAA-CAGATCGAA-GATAGC
* *
77266364 AG--CATGGCTTCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGC
1 AGATC-TGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
* * * * * * *
77266407 AGATTTGGCATCTCTGTATTGT-CAGAGAGCAGATCGAAGATACC
1 AGATCTGGCATCCCTGTGTT-TATAGGGAACAGATCGAAGATAGC
* *
77266451 AGATTTGGCATCTCTGT
1 AGATCTGGCATCCCTGT
77266468 ATTGGCGGAG
Statistics
Matches: 317, Mismatches: 71, Indels: 50
0.72 0.16 0.11
Matches are distributed among these distances:
42 3 0.01
43 36 0.11
44 233 0.74
45 45 0.14
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.28
Consensus pattern (44 bp):
AGATCTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
Found at i:77266253 original size:132 final size:132
Alignment explanation
Indices: 77266011--77266454 Score: 719
Period size: 132 Copynumber: 3.4 Consensus size: 132
77266001 CAAAGAAACA
* * * *
77266011 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAATATAGCAGATCTGTCATTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAACAGATCTGACACTCCTGTGCTT
* *
77266076 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTATTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAGGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
77266141 GC
131 GC
*
77266143 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAACAGATCTGACACTCATGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAACAGATCTGACACTCCTGTGCTT
*
77266208 ACAGCGAAGCAGATCGAGGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTAAAGATA
66 ACAGCGAAGCAGATCGAGGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
77266273 GC
131 GC
*
77266275 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAATAGATCTGACACTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAACAGATCTGACACTCCTGTGCTT
* *
77266340 ACAGCGAAGCAGATCAAGGATTTCAGCATGGCTTCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAGGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
77266405 GC
131 GC
* * * * * *
77266407 AGATTTGGCATCTCTGTATTGT-CAGAGAGCAGATCGAAGATACCAGAT
1 AGATTTGGCATCCCTGTGTT-TATAGGGAACAGATCGAAGATAACAGAT
77266455 TTGGCATCTC
Statistics
Matches: 291, Mismatches: 20, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
132 290 1.00
133 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (132 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAACAGATCTGACACTCCTGTGCTT
ACAGCGAAGCAGATCGAGGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
GC
Found at i:77266468 original size:44 final size:44
Alignment explanation
Indices: 77266398--77266490 Score: 159
Period size: 44 Copynumber: 2.1 Consensus size: 44
77266388 GGAACAAGTT
* *
77266398 GAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATC
1 GAAGATACCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATC
*
77266442 GAAGATACCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATC
1 GAAGATACCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATC
77266486 GAAGA
1 GAAGA
77266491 CATAGCTGAT
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (44 bp):
GAAGATACCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATC
Found at i:77266810 original size:205 final size:205
Alignment explanation
Indices: 77266477--77266980 Score: 918
Period size: 205 Copynumber: 2.5 Consensus size: 205
77266467 TATTGGCGGA
* *
77266477 GAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGAT
1 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGAT
*
77266542 TTGGCATCTTTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGACGAAGGGCAGA
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGACGAAGGGCAGA
*
77266607 CACATAGCAGATCCAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGGTTTGGCATCCTTG
131 CACATAGCAGATCCAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTG
77266672 TGCTTACAAG
196 TGCTTACAAG
77266682 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGAT
1 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGAT
* * *
77266747 TTGGCATCTCTGTATTGTTAGAGAACAAATCGAAGTTTGGCATCTCCACTTCGACGGAGGGCAGA
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGACGAAGGGCAGA
*
77266812 CACATAGCAGATCCAACCTTTAGATGTTTATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTG
131 CACATAGCAGATCCAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTG
77266877 TGCTTACAAG
196 TGCTTACAAG
* *
77266887 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCAGGTGCTTACGTTGAAGCAAGTCTAAGATGAT
1 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGAT
77266952 TTGGCATCTCTGTATTGTCAGAGAACAAA
66 TTGGCATCTCTGTATTGTCAGAGAACAAA
77266981 CCAAAGAAGC
Statistics
Matches: 288, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
205 288 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (205 bp):
GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGAT
TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGACGAAGGGCAGA
CACATAGCAGATCCAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTG
TGCTTACAAG
Found at i:77267365 original size:19 final size:19
Alignment explanation
Indices: 77267341--77267438 Score: 164
Period size: 19 Copynumber: 5.2 Consensus size: 19
77267331 AATCTTTAAG
77267341 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
77267360 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
77267379 GATAT--AATCTTAGATAT
1 GATATGCAATCTTAGATAT
77267396 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
77267415 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
77267436 GAT
1 GAT
77267439 CTTGTAATCT
Statistics
Matches: 75, Mismatches: 0, Indels: 6
0.93 0.00 0.07
Matches are distributed among these distances:
17 17 0.23
19 49 0.65
21 9 0.12
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:77267371 original size:36 final size:38
Alignment explanation
Indices: 77267341--77267438 Score: 164
Period size: 36 Copynumber: 2.6 Consensus size: 38
77267331 AATCTTTAAG
77267341 GATATGCAATCTTAGATATGATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATGCAATCTTAGATAT
77267379 GATAT--AATCTTAGATATGATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATGCAATCTTAGATAT
77267415 GATATGCAATCTTGAAGATATGAT
1 GATATGCAATCTT--AGATATGAT
77267439 CTTGTAATCT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
36 36 0.64
38 11 0.20
40 9 0.16
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.37
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATATGCAATCTTAGATAT
Found at i:77268100 original size:20 final size:21
Alignment explanation
Indices: 77268077--77268116 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
77268067 ATATTTATTA
77268077 ATTATTTATACATAT-TATAT
1 ATTATTTATACATATGTATAT
*
77268097 ATTATTTTTACATATGTATA
1 ATTATTTATACATATGTATA
77268117 CTTTCATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.38, C:0.05, G:0.03, T:0.55
Consensus pattern (21 bp):
ATTATTTATACATATGTATAT
Found at i:77268384 original size:21 final size:23
Alignment explanation
Indices: 77268339--77268384 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
77268329 ATTAATTACT
* *
77268339 TATTTTATACTTATATTTATATA
1 TATTATATAATTATATTTATATA
77268362 TATTATATAATTAT-TTTAT-TA
1 TATTATATAATTATATTTATATA
77268383 TA
1 TA
77268385 AATATAAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 4 0.19
22 5 0.24
23 12 0.57
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (23 bp):
TATTATATAATTATATTTATATA
Found at i:77270390 original size:18 final size:18
Alignment explanation
Indices: 77270367--77270408 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
77270357 AATTTAGTAA
77270367 ATTCTTAACTCGAGATGG
1 ATTCTTAACTCGAGATGG
77270385 ATTCTTAACTCGAGATGG
1 ATTCTTAACTCGAGATGG
77270403 ATTCTT
1 ATTCTT
77270409 GCCCAACTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (18 bp):
ATTCTTAACTCGAGATGG
Found at i:77273459 original size:5 final size:5
Alignment explanation
Indices: 77273449--77273476 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
77273439 GATTTGTGTG
77273449 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
77273477 GAACACACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:77276809 original size:5 final size:5
Alignment explanation
Indices: 77276799--77276830 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
77276789 AAAACTGTGA
77276799 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
77276831 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:77276824 original size:9 final size:9
Alignment explanation
Indices: 77276800--77276830 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
77276790 AAACTGTGAA
77276800 AAATAAAAT
1 AAATAAAAT
77276809 AAAATAAAAT
1 -AAATAAAAT
77276819 AAATAAAAT
1 AAATAAAAT
77276828 AAA
1 AAA
77276831 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:77285557 original size:13 final size:13
Alignment explanation
Indices: 77285539--77285585 Score: 76
Period size: 13 Copynumber: 3.6 Consensus size: 13
77285529 TAAGCCACAC
77285539 GGCCGTGTGGCTA
1 GGCCGTGTGGCTA
*
77285552 GGCCGTATGGCTA
1 GGCCGTGTGGCTA
*
77285565 GGCCGTGTAGCTA
1 GGCCGTGTGGCTA
77285578 GGCCGTGT
1 GGCCGTGT
77285586 AGTATCAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 31 1.00
ACGTcount: A:0.11, C:0.23, G:0.43, T:0.23
Consensus pattern (13 bp):
GGCCGTGTGGCTA
Found at i:77286273 original size:16 final size:17
Alignment explanation
Indices: 77286252--77286285 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
77286242 GAACAAAAAA
77286252 AAAAGT-AAAAATAAAT
1 AAAAGTAAAAAATAAAT
77286268 AAAAGTAAAAAATAAAT
1 AAAAGTAAAAAATAAAT
77286285 A
1 A
77286286 GTTACTATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.76, C:0.00, G:0.06, T:0.18
Consensus pattern (17 bp):
AAAAGTAAAAAATAAAT
Found at i:77287915 original size:3 final size:3
Alignment explanation
Indices: 77287907--77287937 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
77287897 CTTCTCTCAT
77287907 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
77287938 CTTTGTTAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:77302163 original size:18 final size:18
Alignment explanation
Indices: 77302122--77302156 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
77302112 GTACTAGGTA
*
77302122 GATAAAAATGAATACTAC
1 GATAAAAATGAATAATAC
77302140 GATAAAAA-GAATAATAC
1 GATAAAAATGAATAATAC
77302157 ATATAAAGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.60, C:0.09, G:0.11, T:0.20
Consensus pattern (18 bp):
GATAAAAATGAATAATAC
Found at i:77302477 original size:7 final size:7
Alignment explanation
Indices: 77302465--77302497 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
77302455 AAATAGTATT
77302465 TAATATA
1 TAATATA
77302472 TAATATA
1 TAATATA
77302479 TAATATA
1 TAATATA
77302486 TAATATA
1 TAATATA
77302493 TAATA
1 TAATA
77302498 ACAAGAATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (7 bp):
TAATATA
Found at i:77302587 original size:25 final size:24
Alignment explanation
Indices: 77302541--77302595 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
77302531 TATAATATTT
*
77302541 ATAAAAAATAATAAGTGGTATAAAA
1 ATAAAAAATAATAAATGGTAT-AAA
* * *
77302566 ATAAAACATAATAAATGTTATATA
1 ATAAAAAATAATAAATGGTATAAA
77302590 ATAAAA
1 ATAAAA
77302596 TACATAGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
24 8 0.31
25 18 0.69
ACGTcount: A:0.64, C:0.02, G:0.07, T:0.27
Consensus pattern (24 bp):
ATAAAAAATAATAAATGGTATAAA
Found at i:77302777 original size:18 final size:18
Alignment explanation
Indices: 77302750--77302796 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 18
77302740 AGAAATAACA
*
77302750 AATAATAATAATACATAT
1 AATAAAAATAATACATAT
* *
77302768 AATAAAAATAACACTTAT
1 AATAAAAATAATACATAT
77302786 AAT-AAAATAAT
1 AATAAAAATAAT
77302797 CTTATAATGT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
17 7 0.28
18 18 0.72
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (18 bp):
AATAAAAATAATACATAT
Found at i:77302802 original size:16 final size:16
Alignment explanation
Indices: 77302750--77302804 Score: 56
Period size: 18 Copynumber: 3.2 Consensus size: 16
77302740 AGAAATAACA
*
77302750 AATAATAATAATACATAT
1 AATAA-AATAAT-CTTAT
*
77302768 AATAAAAATAACACTTAT
1 AAT-AAAATAA-TCTTAT
77302786 AATAAAATAATCTTAT
1 AATAAAATAATCTTAT
77302802 AAT
1 AAT
77302805 GTATAATATA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
16 8 0.25
17 7 0.22
18 15 0.47
19 2 0.06
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (16 bp):
AATAAAATAATCTTAT
Found at i:77305996 original size:16 final size:15
Alignment explanation
Indices: 77305975--77306070 Score: 69
Period size: 16 Copynumber: 6.3 Consensus size: 15
77305965 ATTTTTACTT
77305975 TTATTATATATATTA
1 TTATTATATATATTA
77305990 CTTATTATAT-TATT-
1 -TTATTATATATATTA
*
77306004 TTTTTATTATATATTA
1 TTATTA-TATATATTA
77306020 TGTA-TATAATATATTA
1 T-TATTAT-ATATATTA
77306036 TTTATTATAT-TATTTA
1 -TTATTATATATA-TTA
77306052 TGT-TTATAT-TATTCA
1 T-TATTATATATATT-A
77306067 TTAT
1 TTAT
77306071 ATTATTTATA
Statistics
Matches: 67, Mismatches: 2, Indels: 23
0.73 0.02 0.25
Matches are distributed among these distances:
13 5 0.07
14 6 0.09
15 23 0.34
16 28 0.42
17 5 0.07
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (15 bp):
TTATTATATATATTA
Found at i:77305998 original size:12 final size:11
Alignment explanation
Indices: 77305958--77306076 Score: 80
Period size: 12 Copynumber: 11.2 Consensus size: 11
77305948 TATATAGCAT
*
77305958 TTATTATATTT
1 TTATTATATTA
*
77305969 TTACT-T-TTA
1 TTATTATATTA
77305978 TTATATATATTA
1 TTAT-TATATTA
77305990 CTTATTATATTA
1 -TTATTATATTA
77306002 TT-TT-T-TTA
1 TTATTATATTA
77306010 TTA-TATATTA
1 TTATTATATTA
77306020 TGTA-TATAATATA
1 T-TATTAT-AT-TA
77306033 TTATT-TATTA
1 TTATTATATTA
77306043 -TATTAT-TTA
1 TTATTATATTA
77306052 TGT-TTATATTA
1 T-TATTATATTA
77306063 TTCATTATATTA
1 TT-ATTATATTA
77306075 TT
1 TT
77306077 TATAATTTTA
Statistics
Matches: 88, Mismatches: 3, Indels: 33
0.71 0.02 0.27
Matches are distributed among these distances:
8 6 0.07
9 14 0.16
10 16 0.18
11 19 0.22
12 25 0.28
13 8 0.09
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.64
Consensus pattern (11 bp):
TTATTATATTA
Found at i:77306017 original size:30 final size:29
Alignment explanation
Indices: 77305942--77306064 Score: 90
Period size: 30 Copynumber: 4.0 Consensus size: 29
77305932 TTATATTGTA
**
77305942 TTTTATTATATAGCATTTATTATATT-TTT
1 TTTTATTATATATTA-TTATTATATTATTT
77305971 ACTTTTATTATATATATTACTTATTATATTATTT
1 --TTTTA-T-TATATATTA-TTATTATATTATTT
*
77306005 TTTTATTATATATTATGTA-TATAATATATT
1 TTTTATTATATATTAT-TATTATATTAT-TT
*
77306035 ATTTATTATATTATTTATGT-TTATATTATT
1 TTTTATTATA-TA-TTAT-TATTATATTATT
77306065 CATTATATTA
Statistics
Matches: 78, Mismatches: 6, Indels: 16
0.78 0.06 0.16
Matches are distributed among these distances:
29 8 0.10
30 22 0.28
31 9 0.12
32 19 0.24
33 17 0.22
34 3 0.04
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.63
Consensus pattern (29 bp):
TTTTATTATATATTATTATTATATTATTT
Found at i:77306040 original size:27 final size:27
Alignment explanation
Indices: 77305978--77306080 Score: 91
Period size: 27 Copynumber: 3.6 Consensus size: 27
77305968 TTTACTTTTA
* *
77305978 TTATATATATTACTTAT-TATATTATTTTT
1 TTAT-TATATTATTTATATATA-TA-TTAT
*
77306007 TTATTATATATTATGTATATAATATATTAT
1 TTA-T-TATATTATTTATAT-ATATATTAT
* *
77306037 TTATTATATTATTTATGTTTATATTAT
1 TTATTATATTATTTATATATATATTAT
*
77306064 TCATTATATTATTTATA
1 TTATTATATTATTTATA
77306081 ATTTTAAGAT
Statistics
Matches: 63, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
27 23 0.37
28 12 0.19
29 4 0.06
30 18 0.29
31 3 0.05
32 3 0.05
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (27 bp):
TTATTATATTATTTATATATATATTAT
Found at i:77318835 original size:178 final size:175
Alignment explanation
Indices: 77318536--77318951 Score: 539
Period size: 178 Copynumber: 2.3 Consensus size: 175
77318526 CAACTTCCTA
* * * **
77318536 AAGTTGCGGTGGAGCAGATTGAAGCTAGATCTTGTCTCCCTAAAGTTATAGGGGAGTAGATCGGG
1 AAGTTGCAGTGGAGCAGATTGAAGTTAGATCTTGTCTCCCTGAAGTTGCAGGGGAGTAGATCGGG
* * * **
77318601 GATAACAAATCTTATCTCTTTAAAGTTTCAGTAGAGTAGATTAAATTTATAAACCTTATCTCCCT
66 GATAACAAATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAGCTATAAACCTTATCTCCCT
* *
77318666 GAAGTTGTCGTGG-GACAGATTGAAGTTATTGC-AGACCTTATCTCCCTG
131 GAAGTTGTAGTGGAG-CAGATTGAAGTCA---CAAG-CCTTATCTCCCTG
* *
77318714 AAGTTGCAGTGGAGTAGATTGAAGTTAGATCTTGTCTACCTGAAGTTGCAGGGGAGTAGATCGGG
1 AAGTTGCAGTGGAGCAGATTGAAGTTAGATCTTGTCTCCCTGAAGTTGCAGGGGAGTAGATCGGG
* *
77318779 GATAGCAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCTATAAACCTTATCTCCCT
66 GATAACAAATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAGCTATAAACCTTATCTCCCT
* *
77318844 GAAGTTGTAGTGGAGTAGATTGAAGTCACAAGTCTTATCTCCCTG
131 GAAGTTGTAGTGGAGCAGATTGAAGTCACAAGCCTTATCTCCCTG
* *** * *
77318889 AAGTTGCAGTGGAGCAGGTTGAAGTTATGAATCTCAACTCCCTGAAGTTGCAGTGGAGCAGAT
1 AAGTTGCAGTGGAGCAGATTGAAGTTA-G-ATCTTGTCTCCCTGAAGTTGCAGGGGAGTAGAT
77318952 TGAAGCAACA
Statistics
Matches: 208, Mismatches: 26, Indels: 9
0.86 0.11 0.04
Matches are distributed among these distances:
175 38 0.18
176 3 0.01
177 27 0.13
178 139 0.67
179 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (175 bp):
AAGTTGCAGTGGAGCAGATTGAAGTTAGATCTTGTCTCCCTGAAGTTGCAGGGGAGTAGATCGGG
GATAACAAATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAGCTATAAACCTTATCTCCCT
GAAGTTGTAGTGGAGCAGATTGAAGTCACAAGCCTTATCTCCCTG
Found at i:77318846 original size:44 final size:44
Alignment explanation
Indices: 77318293--77319000 Score: 308
Period size: 44 Copynumber: 15.8 Consensus size: 44
77318283 CCATAACAAG
* * *
77318293 TCTTATCTCCCTGAAGTCGCAGTGGAGCAGACTGAAGATA-ACGAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTATA--AA
* * * *
77318338 TCTTATTTCCTTAAAGTTGCAGTGGAACAGATTGAAGTTATCATGGTGAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAT-A-----AA
* * ** * *
77318388 TCTTATCTCCCCGAAGTTGCGGTGGAGCAGATTGAAGCCACAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTATAAA
** * * **
77318432 TCCCATAC-CCTTGAAGTTGC-GCGG-G-ACGAATTGAAGTTATGGCAGG
1 TCTTAT-CTCCCTGAAGTTGCAGTGGAGCA-G-ATTGAAGTTAT---AAA
* * * * * * ** *
77318478 CCTTTTTTCCCTAAAGTTGCACTGGAGCAGGTCAAAAGTTACAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT-TGAAGTTATAAA
* * * * * *
77318523 T-TTCAACTTCCTAAAGTTGCGGTGGAGCAGATTGAAG--CTAGA
1 TCTT-ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTATAAA
* * ** * * * ** * *
77318565 TCTTGTCTCCCTAAAGTTATAGGGGAGTAGATCGGGGATAACAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-TTATAAA
** * * * * * *
77318610 TCTTATCTCTTTAAAGTTTCAGTAGAGTAGATTAAATTTATAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTATAAA
* *
77318654 CCTTATCTCCCTGAAGTTGTC-GTGG-GACAGATTGAAGTTATTGCAGA
1 TCTTATCTCCCTGAAGTTG-CAGTGGAG-CAGATTGAAGTTA-T--AAA
* * *
77318701 CCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAG-T-TAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTATAAA
* * * * * ** * *
77318743 TCTTGTCTACCTGAAGTTGCAGGGGAGTAGATCGGGGATAGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA-TAAA
* * * *
77318788 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCTATAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTATAAA
* * * * * *
77318832 CCTTATCTCCCTGAAGTTGTAGTGGAGTAGATTGAAGTCACAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTATAAA
* *
77318876 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTATGAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTATAAA
* * ** * *
77318920 TCTCAACTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCAACAAT
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTATAAA
* * **
77318964 TCCTATACT-CCTGAAGTTGTAGTGGAATAGATTGAAG
1 TCTTAT-CTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
77319001 CGACAAAGTC
Statistics
Matches: 484, Mismatches: 147, Indels: 65
0.70 0.21 0.09
Matches are distributed among these distances:
41 1 0.00
42 60 0.12
43 15 0.03
44 190 0.39
45 118 0.24
46 16 0.03
47 38 0.08
48 9 0.02
49 2 0.00
50 35 0.07
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTATAAA
Found at i:77318981 original size:132 final size:132
Alignment explanation
Indices: 77318700--77319031 Score: 347
Period size: 132 Copynumber: 2.5 Consensus size: 132
77318690 GTTATTGCAG
* * * * *
77318700 ACCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGTTA-GA-TCTTGTCTACCTGAAGTTGC
1 ACCTTATCTCCCTGAAGTTGTAGTGGAGTAGATTGAAGTCACAAGTCTTATCTCCCTGAAGTTGC
* * ** * * * *
77318763 AGGGGAGTAGATCGGGGATAGCAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCTA
66 AGTGGAGCAGATCGAAGATAG-AAATCTCAACTCCCTGAAGTTGCAGTAGAGCAGATTAAAGCAA
*
77318828 TAA
130 CAA
77318831 ACCTTATCTCCCTGAAGTTGTAGTGGAGTAGATTGAAGTCACAAGTCTTATCTCCCTGAAGTTGC
1 ACCTTATCTCCCTGAAGTTGTAGTGGAGTAGATTGAAGTCACAAGTCTTATCTCCCTGAAGTTGC
* * * * *
77318896 AGTGGAGCAGGTTGAAGTTATG-AATCTCAACTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCAA
66 AGTGGAGCAGATCGAAGATA-GAAATCTCAACTCCCTGAAGTTGCAGTAGAGCAGATTAAAGCAA
77318960 CAA
130 CAA
* * *
77318963 TTCC-TATACT-CCTGAAGTTGTAGTGGAATAGATTGAAG-CGACAAAGTC-TATAC-CTCTGAA
1 -ACCTTAT-CTCCCTGAAGTTGTAGTGGAGTAGATTGAAGTC-AC-AAGTCTTAT-CTCCCTGAA
77319023 GTTGCAGTG
61 GTTGCAGTG
77319032 AGTTAGAACG
Statistics
Matches: 171, Mismatches: 22, Indels: 15
0.82 0.11 0.07
Matches are distributed among these distances:
131 40 0.23
132 89 0.52
133 41 0.24
134 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (132 bp):
ACCTTATCTCCCTGAAGTTGTAGTGGAGTAGATTGAAGTCACAAGTCTTATCTCCCTGAAGTTGC
AGTGGAGCAGATCGAAGATAGAAATCTCAACTCCCTGAAGTTGCAGTAGAGCAGATTAAAGCAAC
AA
Found at i:77319001 original size:44 final size:45
Alignment explanation
Indices: 77318798--77319031 Score: 191
Period size: 44 Copynumber: 5.3 Consensus size: 45
77318788 TCTTATCTCT
* * * * **
77318798 CTGAAGTTGCAGTAGAGCAGATTAAAG-CTATAAACCT-TATCTCC
1 CTGAAGTTGCAGTGGAGCAGATTGAAGTCAACAAGTCTATA-CTCC
* *
77318842 CTGAAGTTGTAGTGGAGTAGATTGAAGTC-ACAAGTCT-TATCTCC
1 CTGAAGTTGCAGTGGAGCAGATTGAAGTCAACAAGTCTATA-CTCC
* * **
77318886 CTGAAGTTGCAGTGGAGCAGGTTGAAGTTATGAA-TCTCA-ACTCC
1 CTGAAGTTGCAGTGGAGCAGATTGAAGTCAACAAGTCT-ATACTCC
*
77318930 CTGAAGTTGCAGTGGAGCAGATTGAAG-CAACAATTCCTATACT-C
1 CTGAAGTTGCAGTGGAGCAGATTGAAGTCAACAAGT-CTATACTCC
* ** * *
77318974 CTGAAGTTGTAGTGGAATAGATTGAAG-CGACAAAGTCTATAC-CT
1 CTGAAGTTGCAGTGGAGCAGATTGAAGTCAAC-AAGTCTATACTCC
77319018 CTGAAGTTGCAGTG
1 CTGAAGTTGCAGTG
77319032 AGTTAGAACG
Statistics
Matches: 157, Mismatches: 24, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
43 3 0.02
44 142 0.90
45 12 0.08
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (45 bp):
CTGAAGTTGCAGTGGAGCAGATTGAAGTCAACAAGTCTATACTCC
Found at i:77328510 original size:55 final size:54
Alignment explanation
Indices: 77328423--77328656 Score: 236
Period size: 55 Copynumber: 4.4 Consensus size: 54
77328413 ATTAGGGTTT
* *
77328423 AAGGATACCATGTAAGACCATGCCAAGTCATGGAAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGG-AATTGGTAA-GTTTCATAAGGC
* * * * *
77328478 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACCATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGAATTGGTAAGTT-TCATAAGGC
* * * * *
77328533 AAAGG-TCCCATGTAAGACCATGGCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGAATTGGTAAGTTTCATAAGGC
77328586 AAGGATACCATGTAAGACCATGTCGAA-ACATGGCAA-TGGTAAGTTTC--AA---
1 AAGGATACCATGTAAGACCATGTC-AAGACATGG-AATTGGTAAGTTTCATAAGGC
77328635 AAGGATACCATGTAAGACCATG
1 AAGGATACCATGTAAGACCATG
77328657 AGAAGTCATG
Statistics
Matches: 152, Mismatches: 20, Indels: 20
0.79 0.10 0.10
Matches are distributed among these distances:
49 22 0.14
52 6 0.04
53 39 0.26
54 15 0.10
55 66 0.43
56 4 0.03
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGAATTGGTAAGTTTCATAAGGC
Found at i:77328629 original size:108 final size:110
Alignment explanation
Indices: 77328430--77328630 Score: 284
Period size: 108 Copynumber: 1.8 Consensus size: 110
77328420 TTTAAGGATA
* *
77328430 CCATGTAAGACCATGCCAAGTCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
77328495 CCATGTCAAGACATGGCATTGATAAGTTACCATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACCATAAGGCAAAGGTC
* * * *
77328540 CCATGTAAGACCATGGCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
77328602 ACCATGTCGAA-ACATGGCAATGGTAAGTT
65 ACCATGTC-AAGACATGGCAATGATAAGTT
77328631 TCAAAAGGAT
Statistics
Matches: 81, Mismatches: 8, Indels: 6
0.85 0.08 0.06
Matches are distributed among these distances:
107 3 0.04
108 45 0.56
109 9 0.11
110 24 0.30
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACCATAAGGCAAAGGTC
Found at i:77328783 original size:23 final size:24
Alignment explanation
Indices: 77328746--77328790 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
77328736 AAGGTAAGGT
**
77328746 AAGGTAAGATGAGTT-ATGCTAAA
1 AAGGTAAGACAAGTTCATGCTAAA
77328769 AAGGTAAGACAAGTTCATGCTA
1 AAGGTAAGACAAGTTCATGCTA
77328791 GAAGAGCAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.42, C:0.09, G:0.24, T:0.24
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATGCTAAA
Found at i:77333820 original size:14 final size:13
Alignment explanation
Indices: 77333791--77333832 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
77333781 AAAAATTATA
77333791 AAATTTGAATTAC
1 AAATTTGAATTAC
77333804 AAATTT-AATTAGCC
1 AAATTTGAATTA--C
*
77333818 AAATTTGAATCAC
1 AAATTTGAATTAC
77333831 AA
1 AA
77333833 GTTTTAAGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
12 5 0.20
13 9 0.36
14 7 0.28
15 4 0.16
ACGTcount: A:0.48, C:0.12, G:0.07, T:0.33
Consensus pattern (13 bp):
AAATTTGAATTAC
Found at i:77335387 original size:21 final size:22
Alignment explanation
Indices: 77335361--77335409 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 22
77335351 GGTAAAAAGG
*
77335361 GGCACACAACCC-TGTGGA-AGA
1 GGCACAC-ACCCGTGTGAAGAGA
77335382 GGCACACACCCGTGTGAAGAGA
1 GGCACACACCCGTGTGAAGAGA
77335404 GGCACA
1 GGCACA
77335410 TGGCCGTATG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 4 0.16
21 12 0.48
22 9 0.36
ACGTcount: A:0.33, C:0.29, G:0.31, T:0.08
Consensus pattern (22 bp):
GGCACACACCCGTGTGAAGAGA
Found at i:77336338 original size:13 final size:13
Alignment explanation
Indices: 77336322--77336367 Score: 53
Period size: 13 Copynumber: 3.8 Consensus size: 13
77336312 AAAGTCCTGA
77336322 AAAAAATAAAAAT
1 AAAAAATAAAAAT
*
77336335 AAAAAGTAAAAAT
1 AAAAAATAAAAAT
*
77336348 ---AAATAAAAGT
1 AAAAAATAAAAAT
77336358 AAAAAATAAA
1 AAAAAATAAA
77336368 TAGTTACTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
10 8 0.30
13 19 0.70
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.15
Consensus pattern (13 bp):
AAAAAATAAAAAT
Found at i:77336353 original size:17 final size:18
Alignment explanation
Indices: 77336331--77336369 Score: 64
Period size: 17 Copynumber: 2.3 Consensus size: 18
77336321 AAAAAAATAA
77336331 AAATAAAAAGT-AAAAAT
1 AAATAAAAAGTAAAAAAT
77336348 AAAT-AAAAGTAAAAAAT
1 AAATAAAAAGTAAAAAAT
77336365 AAATA
1 AAATA
77336370 GTTACTATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.77, C:0.00, G:0.05, T:0.18
Consensus pattern (18 bp):
AAATAAAAAGTAAAAAAT
Found at i:77336354 original size:23 final size:22
Alignment explanation
Indices: 77336321--77336367 Score: 67
Period size: 23 Copynumber: 2.1 Consensus size: 22
77336311 AAAAGTCCTG
*
77336321 AAAAAAATAAAAATAAAAAGTA
1 AAAAAAATAAAAATAAAAAATA
*
77336343 AAAATAAATAAAAGTAAAAAATA
1 AAAA-AAATAAAAATAAAAAATA
77336366 AA
1 AA
77336368 TAGTTACTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 4 0.18
23 18 0.82
ACGTcount: A:0.81, C:0.00, G:0.04, T:0.15
Consensus pattern (22 bp):
AAAAAAATAAAAATAAAAAATA
Found at i:77336954 original size:36 final size:36
Alignment explanation
Indices: 77336913--77337007 Score: 163
Period size: 36 Copynumber: 2.6 Consensus size: 36
77336903 ATCTTTAAGG
77336913 ATATGCAATCTTAGATATGATACAATCTTAGATATA
1 ATATGCAATCTTAGATATGATACAATCTTAGATATA
*
77336949 ATATGCAATCTTAGATATGATACAATCTTAGATATG
1 ATATGCAATCTTAGATATGATACAATCTTAGATATA
77336985 ATATGCAATCTTGAAGATATGAT
1 ATATGCAATCTT--AGATATGAT
77337008 CTTGTAATCT
Statistics
Matches: 56, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
36 47 0.84
38 9 0.16
ACGTcount: A:0.40, C:0.11, G:0.14, T:0.36
Consensus pattern (36 bp):
ATATGCAATCTTAGATATGATACAATCTTAGATATA
Found at i:77336959 original size:19 final size:19
Alignment explanation
Indices: 77336912--77337007 Score: 137
Period size: 17 Copynumber: 5.2 Consensus size: 19
77336902 AATCTTTAAG
77336912 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
77336931 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
77336948 AATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
77336967 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
77336984 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
77337005 GAT
1 GAT
77337008 CTTGTAATCT
Statistics
Matches: 69, Mismatches: 2, Indels: 10
0.85 0.02 0.12
Matches are distributed among these distances:
17 33 0.48
19 27 0.39
21 9 0.13
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:77339660 original size:29 final size:29
Alignment explanation
Indices: 77339628--77339688 Score: 113
Period size: 29 Copynumber: 2.1 Consensus size: 29
77339618 TTCAAAGAAA
*
77339628 CTTATTTCTTCTCCCATTCAAACTTATTT
1 CTTATTTCTTCTCCCATTCAAACTCATTT
77339657 CTTATTTCTTCTCCCATTCAAACTCATTT
1 CTTATTTCTTCTCCCATTCAAACTCATTT
77339686 CTT
1 CTT
77339689 CACTTCTCTC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.20, C:0.30, G:0.00, T:0.51
Consensus pattern (29 bp):
CTTATTTCTTCTCCCATTCAAACTCATTT
Found at i:77339698 original size:29 final size:29
Alignment explanation
Indices: 77339628--77339695 Score: 100
Period size: 29 Copynumber: 2.3 Consensus size: 29
77339618 TTCAAAGAAA
* *
77339628 CTTATTTCTTCTCCCATTCAAACTTATTT
1 CTTACTTCTTCTCCCATTCAAACTCATTT
*
77339657 CTTATTTCTTCTCCCATTCAAACTCATTT
1 CTTACTTCTTCTCCCATTCAAACTCATTT
77339686 CTTCACTTCT
1 CTT-ACTTCT
77339696 CTCATTTCTT
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
29 31 0.86
30 5 0.14
ACGTcount: A:0.19, C:0.31, G:0.00, T:0.50
Consensus pattern (29 bp):
CTTACTTCTTCTCCCATTCAAACTCATTT
Found at i:77339709 original size:3 final size:3
Alignment explanation
Indices: 77339701--77339746 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
77339691 CTTCTCTCAT
77339701 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
77339747 CTTTGTTAGT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:77348110 original size:48 final size:47
Alignment explanation
Indices: 77348058--77348181 Score: 153
Period size: 48 Copynumber: 2.6 Consensus size: 47
77348048 AGTGATAATT
77348058 TTAAATTTACAATACTGTTTGATATTATT-TTAATTTATGCAAATT-TAA
1 TTAAATTT-CAATACTGTTTGATATT-TTATTAATTTATGC-AATTATAA
* *
77348106 TTAAATTTGCAATACTATTTGATATTTTATTCATTTATGCAATTATAA
1 TTAAATTT-CAATACTGTTTGATATTTTATTAATTTATGCAATTATAA
* *
77348154 TTACAATTTCAATACTGCTTGATTTTTT
1 TTA-AATTTCAATACTGTTTGATATTTT
77348182 TTTTCATTTA
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
47 6 0.09
48 56 0.84
49 5 0.07
ACGTcount: A:0.34, C:0.09, G:0.06, T:0.51
Consensus pattern (47 bp):
TTAAATTTCAATACTGTTTGATATTTTATTAATTTATGCAATTATAA
Found at i:77349804 original size:18 final size:18
Alignment explanation
Indices: 77349781--77349823 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
77349771 TGCCAAGTGC
* *
77349781 GTATCCTAGCCCTTATAT
1 GTATCCTAACCCATATAT
77349799 GTATCCTAACCCATATAT
1 GTATCCTAACCCATATAT
*
77349817 GTTTCCT
1 GTATCCT
77349824 TTTCCTAGTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.23, C:0.28, G:0.09, T:0.40
Consensus pattern (18 bp):
GTATCCTAACCCATATAT
Found at i:77353916 original size:20 final size:20
Alignment explanation
Indices: 77353891--77353963 Score: 73
Period size: 20 Copynumber: 3.8 Consensus size: 20
77353881 TCGTGTATGT
77353891 ATCAATTAACCCTAAATTTA
1 ATCAATTAACCCTAAATTTA
* *
77353911 ATCAATTAACCCTAAAACCTAA
1 ATCAATTAACCCT-AAA-TTTA
*
77353933 ATCAATT---CAT-AATTTA
1 ATCAATTAACCCTAAATTTA
77353949 ATCAATTAACCCTAA
1 ATCAATTAACCCTAA
77353964 TACCCTAAAC
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
16 9 0.22
17 2 0.05
19 4 0.10
20 14 0.34
21 3 0.07
22 9 0.22
ACGTcount: A:0.47, C:0.22, G:0.00, T:0.32
Consensus pattern (20 bp):
ATCAATTAACCCTAAATTTA
Found at i:77359296 original size:14 final size:14
Alignment explanation
Indices: 77359277--77359329 Score: 60
Period size: 14 Copynumber: 4.1 Consensus size: 14
77359267 ATATAAAAGA
77359277 GAAAGTATTCTTTT
1 GAAAGTATTCTTTT
*
77359291 GAAAGTGTTCTTTT
1 GAAAGTATTCTTTT
77359305 G---G-ATTCTTTT
1 GAAAGTATTCTTTT
*
77359315 GAAAGTGTTCTTTT
1 GAAAGTATTCTTTT
77359329 G
1 G
77359330 GAGTCCTATT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
10 8 0.25
11 1 0.03
13 1 0.03
14 22 0.69
ACGTcount: A:0.21, C:0.08, G:0.21, T:0.51
Consensus pattern (14 bp):
GAAAGTATTCTTTT
Found at i:77359315 original size:24 final size:24
Alignment explanation
Indices: 77359283--77359331 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
77359273 AAGAGAAAGT
77359283 ATTCTTTTGAAAGTGTTCTTTTGG
1 ATTCTTTTGAAAGTGTTCTTTTGG
77359307 ATTCTTTTGAAAGTGTTCTTTTGG
1 ATTCTTTTGAAAGTGTTCTTTTGG
77359331 A
1 A
77359332 GTCCTATTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.18, C:0.08, G:0.20, T:0.53
Consensus pattern (24 bp):
ATTCTTTTGAAAGTGTTCTTTTGG
Found at i:77361110 original size:24 final size:24
Alignment explanation
Indices: 77361082--77361132 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
77361072 TCTTTGTTCA
*
77361082 TTTATATGTTCACTTATTCCTTTG
1 TTTATATATTCACTTATTCCTTTG
* * *
77361106 TTTATTTATTTATTTATTCCTTTG
1 TTTATATATTCACTTATTCCTTTG
77361130 TTT
1 TTT
77361133 GTTTACTATA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.16, C:0.12, G:0.06, T:0.67
Consensus pattern (24 bp):
TTTATATATTCACTTATTCCTTTG
Found at i:77369706 original size:31 final size:32
Alignment explanation
Indices: 77369670--77369730 Score: 97
Period size: 32 Copynumber: 1.9 Consensus size: 32
77369660 ATCGCATGTG
* *
77369670 GAGCTAAACGC-ATTTGCTCAGCTATTCTACA
1 GAGCTAAACACAAGTTGCTCAGCTATTCTACA
77369701 GAGCTAAACACAAGTTGCTCAGCTATTCTA
1 GAGCTAAACACAAGTTGCTCAGCTATTCTA
77369731 TAGAATAAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
31 10 0.37
32 17 0.63
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (32 bp):
GAGCTAAACACAAGTTGCTCAGCTATTCTACA
Found at i:77370654 original size:42 final size:42
Alignment explanation
Indices: 77370595--77370682 Score: 176
Period size: 42 Copynumber: 2.1 Consensus size: 42
77370585 TAGCAGGAAT
77370595 GAGGAGTATAAACTCCTCGAACCACCATGACCATTCAATGGA
1 GAGGAGTATAAACTCCTCGAACCACCATGACCATTCAATGGA
77370637 GAGGAGTATAAACTCCTCGAACCACCATGACCATTCAATGGA
1 GAGGAGTATAAACTCCTCGAACCACCATGACCATTCAATGGA
77370679 GAGG
1 GAGG
77370683 TCAGTCGAGC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.25, G:0.22, T:0.18
Consensus pattern (42 bp):
GAGGAGTATAAACTCCTCGAACCACCATGACCATTCAATGGA
Found at i:77370888 original size:13 final size:13
Alignment explanation
Indices: 77370870--77370894 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
77370860 GGACAGAAAC
77370870 ACGGCCGTGCGAT
1 ACGGCCGTGCGAT
77370883 ACGGCCGTGCGA
1 ACGGCCGTGCGA
77370895 AAATAGGGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.32, G:0.40, T:0.12
Consensus pattern (13 bp):
ACGGCCGTGCGAT
Found at i:77380937 original size:91 final size:95
Alignment explanation
Indices: 77380778--77380978 Score: 225
Period size: 91 Copynumber: 2.2 Consensus size: 95
77380768 TCTTATTCCC
* * * * *
77380778 TGAAGTTGCAGTGGAACGGATTGAAGTTATCATGGCGAATCTTATCTCCCCGAAGTTGCAGTGGA
1 TGAAGTTGTAGTGGAACGAATTGAAGTTATCATGGCGAACCTTATCTCCCCAAAGTTGCAGTGAA
**
77380843 GCAGAT-TGAAGCCACAAATCCCATACT-CT
66 GCAGATCAAAAGCCACAAATCCCA-ACTCCT
* *
77380872 TGAAGTTGTAGTGGGACGAATTGAAG-T-T-ATGGC-AAGCCTTATCTCCCTAAAGTTGCAGTGA
1 TGAAGTTGTAGTGGAACGAATTGAAGTTATCATGGCGAA-CCTTATCTCCCCAAAGTTGCAGTGA
* ** *
77380933 AGCAGGTCAAAAGTTACAAATCTCAACTCCT
65 AGCAGATCAAAAGCCACAAATCCCAACTCCT
77380964 TGAAGTTGTAGTGGA
1 TGAAGTTGTAGTGGA
77380979 GCAGATTAAA
Statistics
Matches: 90, Mismatches: 14, Indels: 8
0.80 0.12 0.07
Matches are distributed among these distances:
90 2 0.02
91 35 0.39
92 29 0.32
93 1 0.01
94 23 0.26
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (95 bp):
TGAAGTTGTAGTGGAACGAATTGAAGTTATCATGGCGAACCTTATCTCCCCAAAGTTGCAGTGAA
GCAGATCAAAAGCCACAAATCCCAACTCCT
Found at i:77381058 original size:87 final size:87
Alignment explanation
Indices: 77380964--77381293 Score: 338
Period size: 89 Copynumber: 3.7 Consensus size: 87
77380954 CTCAACTCCT
* * *
77380964 TGAAGTTGTAGTGGAGCAGATTAAAGTTAGATCTTGTCTCCCTAAAGTTGTAGGGGAGTAGATCG
1 TGAAGTTGCAGTAGAGCAGATTAAAGTTAGATCTTGTCTCCCTAAAGTTGCAGGGGAGTAGATCG
77381029 GGGATAGCAAATCTTATCTCTC
66 GGGATAGCAAATCTTATCTCTC
* * * * ** * *
77381051 TAAAGTTGCAGTAGAGCAGATTAAAGATATAAACCTTATCTCTGTGAAGTTGCAGTGGGA-CAGA
1 TGAAGTTGCAGTAGAGCAGATTAAAG-T-TAGATCTTGTCTCCCTAAAGTTGCAG-GGGAGTAGA
* ** * *** *
77381115 TTGAAGTTATGGCAGGCCTTATCTCCC
63 TCG--GGGATAGCAAATCTTATCTCTC
* *
77381142 TGAAGTTGCAGTAGAGCATATTGAAGTTAGATCTTGTCTCCCTAAAGTTGCAGGGGAGTAGATCG
1 TGAAGTTGCAGTAGAGCAGATTAAAGTTAGATCTTGTCTCCCTAAAGTTGCAGGGGAGTAGATCG
77381207 GGGATAGCAAATCTTATCTCTC
66 GGGATAGCAAATCTTATCTCTC
* * * * * * *
77381229 TGAAGTTGCAGTAGAGTAGATTAAAGCTATAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
1 TGAAGTTGCAGTAGAGCAGATTAAAG-T-TAGATCTTGTCTCCCTAAAGTTGCAGGGGAGTAGAT
77381294 TAAAGTCACA
Statistics
Matches: 189, Mismatches: 46, Indels: 14
0.76 0.18 0.06
Matches are distributed among these distances:
87 61 0.32
88 6 0.03
89 79 0.42
90 5 0.03
91 38 0.20
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.29
Consensus pattern (87 bp):
TGAAGTTGCAGTAGAGCAGATTAAAGTTAGATCTTGTCTCCCTAAAGTTGCAGGGGAGTAGATCG
GGGATAGCAAATCTTATCTCTC
Found at i:77381093 original size:44 final size:44
Alignment explanation
Indices: 77381041--77381335 Score: 211
Period size: 44 Copynumber: 6.7 Consensus size: 44
77381031 GATAGCAAAT
* *
77381041 CTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAGATATAAAC
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGATATAAAC
** * * * **
77381085 CTTATCTCTGTGAAGTTGCAGT-GGGACAGATTGAAGTTATGGCAGGC
1 CTTATCTCCCTGAAGTTGCAGTAGAG-CAGATTAAAGATAT---AAAC
* * * *
77381132 CTTATCTCCCTGAAGTTGCAGTAGAGCATATTGAAG-T-TAGAT
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGATATAAAC
* * ** * **** * *
77381174 CTTGTCTCCCTAAAGTTGCAGGGGAGTAGATCGGGGATAGCAAAT
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGATA-TAAAC
* * *
77381219 CTTATCTCTCTGAAGTTGCAGTAGAGTAGATTAAAGCTATAAAC
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGATATAAAC
* * **
77381263 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-TCACAAGT
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGAT-ATAAAC
* *
77381307 CTTATCTCCCTGAAGTTGCGGTGGAGCAG
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAG
77381336 GTTGAAGTTA
Statistics
Matches: 199, Mismatches: 43, Indels: 18
0.77 0.17 0.07
Matches are distributed among these distances:
42 29 0.15
43 4 0.02
44 99 0.50
45 33 0.17
46 1 0.01
47 31 0.16
48 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (44 bp):
CTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGATATAAAC
Found at i:77381205 original size:178 final size:175
Alignment explanation
Indices: 77380908--77381345 Score: 590
Period size: 178 Copynumber: 2.5 Consensus size: 175
77380898 TTATGGCAAG
* * * * * ** * * * *
77380908 CCTTATCTCCCTAAAGTTGCAGTGAAGCAGGTCAAAAGTTACAAATCTCAACTCCTTGAAGTTGT
1 CCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT-TAAAGTCACAAGCCTTATCTCCCTGAAGTTGC
* *
77380973 AGTGGAGCAGATTAAAGTTAGATCTTGTCTCCCTAAAGTTGTAGGGGAGTAGATCGGGGATAGCA
65 AGTGGAGCAGATTGAAGTTAGATCTTGTCTCCCTAAAGTTGCAGGGGAGTAGATCGGGGATAGCA
77381038 AATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAGATATAAA
130 AATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAGATATAAA
** * * *
77381084 CCTTATCTCTGTGAAGTTGCAGTGG-GACAGATTGAAGTTATGGCAGGCCTTATCTCCCTGAAGT
1 CCTTATCTCCCTGAAGTTGCAGTGGAG-CAGATTAAAGTCA---CAAGCCTTATCTCCCTGAAGT
* *
77381148 TGCAGTAGAGCATATTGAAGTTAGATCTTGTCTCCCTAAAGTTGCAGGGGAGTAGATCGGGGATA
62 TGCAGTGGAGCAGATTGAAGTTAGATCTTGTCTCCCTAAAGTTGCAGGGGAGTAGATCGGGGATA
* * *
77381213 GCAAATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATTAAAGCTATAAA
127 GCAAATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAGATATAAA
* *
77381262 CCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCACAAGTCTTATCTCCCTGAAGTTGCG
1 CCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCACAAGCCTTATCTCCCTGAAGTTGCA
*
77381327 GTGGAGCAGGTTGAAGTTA
66 GTGGAGCAGATTGAAGTTA
77381346 CGAATCTCAA
Statistics
Matches: 226, Mismatches: 31, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
175 45 0.20
176 25 0.11
178 155 0.69
179 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.29
Consensus pattern (175 bp):
CCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCACAAGCCTTATCTCCCTGAAGTTGCA
GTGGAGCAGATTGAAGTTAGATCTTGTCTCCCTAAAGTTGCAGGGGAGTAGATCGGGGATAGCAA
ATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAGATATAAA
Found at i:77381235 original size:45 final size:45
Alignment explanation
Indices: 77380994--77381325 Score: 151
Period size: 44 Copynumber: 7.5 Consensus size: 45
77380984 TTAAAGTTAG
* * * * * *
77380994 ATCTTGTCTCCCTAAAGTTGTAGGGGAGTAGATCGGGGATAGCAA
1 ATCTTATCTCCCTAAAGTTGCAGGAGAGCAGATTGGAGATAGCAA
* * ** *
77381039 ATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAGATA-TAA
1 ATCTTATCTCCCTAAAGTTGCAGGAGAGCAGATTGGAGATAGCAA
* ** * * * * *
77381083 ACCTTATCTCTGTGAAGTTGCAGTGGGA-CAGATTGAAGTTATGGCAG
1 ATCTTATCTCCCTAAAGTTGCAG-GAGAGCAGATTGGAG--ATAGCAA
** * * * * *
77381130 GCCTTATCTCCCTGAAGTTGCAGTAGAGCATATTGAAGTTAG---
1 ATCTTATCTCCCTAAAGTTGCAGGAGAGCAGATTGGAGATAGCAA
* * * * *
77381172 ATCTTGTCTCCCTAAAGTTGCAGGGGAGTAGATCGGGGATAGCAA
1 ATCTTATCTCCCTAAAGTTGCAGGAGAGCAGATTGGAGATAGCAA
* * * * ** * *
77381217 ATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATTAAAGCTA-TAA
1 ATCTTATCTCCCTAAAGTTGCAGGAGAGCAGATTGGAGATAGCAA
* * **
77381261 ACCTTATCTCCCTGAAGTTGCAGTG-GAGCAGATTAAAG-TCA-CAA
1 ATCTTATCTCCCTAAAGTTGCAG-GAGAGCAGATTGGAGAT-AGCAA
* *
77381305 GTCTTATCTCCCTGAAGTTGC
1 ATCTTATCTCCCTAAAGTTGC
77381326 GGTGGAGCAG
Statistics
Matches: 219, Mismatches: 58, Indels: 21
0.73 0.19 0.07
Matches are distributed among these distances:
42 30 0.14
43 1 0.00
44 88 0.40
45 66 0.30
46 4 0.02
47 30 0.14
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (45 bp):
ATCTTATCTCCCTAAAGTTGCAGGAGAGCAGATTGGAGATAGCAA
Found at i:77381365 original size:44 final size:44
Alignment explanation
Indices: 77381228--77381419 Score: 142
Period size: 44 Copynumber: 4.4 Consensus size: 44
77381218 TCTTATCTCT
* * * ** * *
77381228 CTGAAGTTGCAGTAGAGTAGATTAAAG-CTATAAACCTTATCTCC
1 CTGAAGTTGCAGTGGAGCAGATTAAAGTC-ACAAGTCTCAACTCC
* *
77381272 CTGAAGTTGCAGTGGAGCAGATTAAAGTCACAAGTCTTATCTCC
1 CTGAAGTTGCAGTGGAGCAGATTAAAGTCACAAGTCTCAACTCC
* * * *
77381316 CTGAAGTTGCGGTGGAGCAGGTTGAAGTTACGAA-TCTCAACTCC
1 CTGAAGTTGCAGTGGAGCAGATTAAAGTCAC-AAGTCTCAACTCC
* * * * *
77381360 TTGAAGTTGCAATGGAGTAGATTGAAG-CAACAATTC-CTATACT-C
1 CTGAAGTTGCAGTGGAGCAGATTAAAGTC-ACAAGTCTC-A-ACTCC
77381404 CTGAAGTTGCAGTGGA
1 CTGAAGTTGCAGTGGA
77381420 ATAGATTGAA
Statistics
Matches: 123, Mismatches: 19, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
43 3 0.02
44 114 0.93
45 6 0.05
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (44 bp):
CTGAAGTTGCAGTGGAGCAGATTAAAGTCACAAGTCTCAACTCC
Found at i:77381429 original size:88 final size:88
Alignment explanation
Indices: 77381268--77381431 Score: 206
Period size: 88 Copynumber: 1.9 Consensus size: 88
77381258 TAAACCTTAT
* * * *
77381268 CTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCACAAGTCTTATCTCCCTGAAGTTGCGGTGGAG
1 CTCCCTGAAGTTGCAATGGAGCAGATTAAAGTCACAAGTCCTATCTCCCTGAAGTTGCAGTGGAA
*
77381333 CAGGTTGAAGTTACGAATCTCAA
66 CAGATTGAAGTTACGAATCTCAA
* * * *
77381356 CTCCTTGAAGTTGCAATGGAGTAGATTGAAG-CAACAATTCCTATACT-CCTGAAGTTGCAGTGG
1 CTCCCTGAAGTTGCAATGGAGCAGATTAAAGTC-ACAAGTCCTAT-CTCCCTGAAGTTGCAGTGG
*
77381419 AATAGATTGAAGT
64 AACAGATTGAAGT
77381432 GACTAAGTCT
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
87 1 0.02
88 61 0.95
89 2 0.03
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (88 bp):
CTCCCTGAAGTTGCAATGGAGCAGATTAAAGTCACAAGTCCTATCTCCCTGAAGTTGCAGTGGAA
CAGATTGAAGTTACGAATCTCAA
Found at i:77381444 original size:44 final size:43
Alignment explanation
Indices: 77381271--77381445 Score: 158
Period size: 44 Copynumber: 4.0 Consensus size: 43
77381261 ACCTTATCTC
* *
77381271 CCTGAAGTTGCAGTGGAGCAGATTAAAGTCACAAGTCT-TATCT
1 CCTGAAGTTGCAGTGGAGCAGATTGAAGTAACAAGTCTATA-CT
* * *
77381314 CCCTGAAGTTGCGGTGGAGCAGGTTGAAGTTACGAA-TCTCA-ACT
1 -CCTGAAGTTGCAGTGGAGCAGATTGAAGTAAC-AAGTCT-ATACT
* * * *
77381358 CCTTGAAGTTGCAATGGAGTAGATTGAAGCAACAATTCCTATACT
1 CC-TGAAGTTGCAGTGGAGCAGATTGAAGTAACAAGT-CTATACT
** *
77381403 CCTGAAGTTGCAGTGGAATAGATTGAAGTGACTAAGTCTATAC
1 CCTGAAGTTGCAGTGGAGCAGATTGAAGTAAC-AAGTCTATAC
77381446 CTTTAAAGTT
Statistics
Matches: 108, Mismatches: 15, Indels: 16
0.78 0.11 0.12
Matches are distributed among these distances:
43 4 0.04
44 91 0.84
45 13 0.12
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (43 bp):
CCTGAAGTTGCAGTGGAGCAGATTGAAGTAACAAGTCTATACT
Found at i:77381782 original size:17 final size:17
Alignment explanation
Indices: 77381762--77381798 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
77381752 GACCCTAGCT
77381762 CAATTA-AAACCCAATAA
1 CAATTACAAACCCAA-AA
77381779 CAATTACAAACCCAAAA
1 CAATTACAAACCCAAAA
77381796 CAA
1 CAA
77381799 AAAAAAACTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.59, C:0.27, G:0.00, T:0.14
Consensus pattern (17 bp):
CAATTACAAACCCAAAA
Found at i:77403860 original size:26 final size:26
Alignment explanation
Indices: 77403829--77403936 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
77403819 TGAAATGCCC
* *
77403829 ATCATGAAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
77403855 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
77403881 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
77403907 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
77403933 ATCA
1 ATCA
77403937 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:77406310 original size:26 final size:26
Alignment explanation
Indices: 77406279--77406386 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
77406269 TGAAATGCCC
* *
77406279 ATCATGAAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
77406305 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
77406331 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
77406357 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
77406383 ATCA
1 ATCA
77406387 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:77407680 original size:14 final size:13
Alignment explanation
Indices: 77407651--77407692 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
77407641 AAAAATTATA
77407651 AAATTTGAATTAC
1 AAATTTGAATTAC
77407664 AAATTT-AATTAGCC
1 AAATTTGAATTA--C
*
77407678 AAATTTGAATCAC
1 AAATTTGAATTAC
77407691 AA
1 AA
77407693 GTTTTAAGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
12 5 0.20
13 9 0.36
14 7 0.28
15 4 0.16
ACGTcount: A:0.48, C:0.12, G:0.07, T:0.33
Consensus pattern (13 bp):
AAATTTGAATTAC
Found at i:77409155 original size:50 final size:51
Alignment explanation
Indices: 77409092--77409198 Score: 162
Period size: 50 Copynumber: 2.1 Consensus size: 51
77409082 ATAAGTGATA
* * *
77409092 GGCTACACTTATCTGATCAAGGATAAGTGA-AAGTGATAAGTGATAGCTTC
1 GGCTACACTTATCTGATCAAGGACAAATGACAAGTGAAAAGTGATAGCTTC
* *
77409142 GGCTACACTTATCTGATCAAGGACAAATGACAAGTGAAAAGTGGTAGCTTT
1 GGCTACACTTATCTGATCAAGGACAAATGACAAGTGAAAAGTGATAGCTTC
77409193 GGCTAC
1 GGCTAC
77409199 CTGATCAGTG
Statistics
Matches: 51, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
50 28 0.55
51 23 0.45
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.26
Consensus pattern (51 bp):
GGCTACACTTATCTGATCAAGGACAAATGACAAGTGAAAAGTGATAGCTTC
Found at i:77409212 original size:31 final size:31
Alignment explanation
Indices: 77409174--77409260 Score: 138
Period size: 31 Copynumber: 2.8 Consensus size: 31
77409164 ACAAATGACA
*
77409174 AGTGAAAAGTGGTAGCTTTGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
77409205 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
77409236 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
77409261 AAGTGACAAG
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 50 1.00
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:77409390 original size:93 final size:95
Alignment explanation
Indices: 77409276--77409512 Score: 259
Period size: 93 Copynumber: 2.5 Consensus size: 95
77409266 ACAAGTGATT
* * * *
77409276 TTCGTATAAGACCATATCTGGGATATGGCATCGATATGAT-ATATGCT-A-CTGTATAAGGCCAT
1 TTCGTGTAAGACCATAGCTGGGCTATGGCATCGATATG-TGATATG-TGATCTGTATAAGACCAT
* * *
77409338 ATCTGGGATATGGCATC-A-GTGAGATATGTGA
64 AGCTGGGAT-TAGCATCGATATGAGATATGTGA
* * *
77409369 TTCGTGTAAGACCATAGCTGGGCTATGCCATCAATATGTGATATGTGATCTGTGTAAGACCATAG
1 TTCGTGTAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATCTGTATAAGACCATAG
* *
77409434 CTGGGCTTAGCATCGATATGTGATATGTGA
66 CTGGGATTAGCATCGATATGAGATATGTGA
* * *
77409464 TTACGTGTAAGACCGTAGCTGGGCTATGGCATTGATATATGAATATGTG
1 TT-CGTGTAAGACCATAGCTGGGCTATGGCATCGATATGTG-ATATGTG
77409513 TAAGACCATA
Statistics
Matches: 120, Mismatches: 17, Indels: 10
0.82 0.12 0.07
Matches are distributed among these distances:
92 2 0.02
93 45 0.38
94 20 0.17
95 13 0.11
96 33 0.28
97 7 0.06
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (95 bp):
TTCGTGTAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATCTGTATAAGACCATAG
CTGGGATTAGCATCGATATGAGATATGTGA
Found at i:77409424 original size:48 final size:47
Alignment explanation
Indices: 77409282--77409582 Score: 265
Period size: 42 Copynumber: 6.6 Consensus size: 47
77409272 GATTTTCGTA
* * * *
77409282 TAAGACCATATCTGGGATATGGCATCGATATGAT-ATATGCT-ACTGTA
1 TAAGACCATAGCTGGGCTATGGCATCGATATG-TGATATG-TGATTGTG
* * * * *
77409329 TAAGGCCATATCTGGGATATGGCATC-A-GTGAGATATGTGATTCGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATT-GTG
* *
77409375 TAAGACCATAGCTGGGCTATGCCATCAATATGTGATATGTGATCTGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGAT-TGTG
*
77409423 TAAGACCATAGCTGGGCT-TAGCATCGATATGTGATATGTGATTACGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATT--GTG
* * *
77409471 TAAGACCGTAGCTGGGCTATGGCATTGATATATGA-A--T-A-TGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTGTG
77409513 TAAGACCATAGCTGGGCTATGGCATC-ATTATGTGA-A---GA-TGTG
1 TAAGACCATAGCTGGGCTATGGCATCGA-TATGTGATATGTGATTGTG
* **
77409555 TAAGACCATAGTTGAACTATGGCATCGA
1 TAAGACCATAGCTGGGCTATGGCATCGA
77409583 GAAAACGAAG
Statistics
Matches: 218, Mismatches: 24, Indels: 28
0.81 0.09 0.10
Matches are distributed among these distances:
41 1 0.00
42 62 0.28
43 1 0.00
44 2 0.01
45 10 0.05
46 27 0.12
47 47 0.22
48 54 0.25
49 14 0.06
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (47 bp):
TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTGTG
Found at i:77411616 original size:17 final size:16
Alignment explanation
Indices: 77411595--77411640 Score: 65
Period size: 17 Copynumber: 2.7 Consensus size: 16
77411585 ACCGAACAAA
77411595 AAAAATAAAATAAAAAGT
1 AAAAAT-AAAT-AAAAGT
77411613 AAAAATAAATAAAAGT
1 AAAAATAAATAAAAGT
77411629 AAAAAATAAATA
1 -AAAAATAAATA
77411641 GTTACTATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.22
17 15 0.56
18 6 0.22
ACGTcount: A:0.78, C:0.00, G:0.04, T:0.17
Consensus pattern (16 bp):
AAAAATAAATAAAAGT
Found at i:77415742 original size:31 final size:32
Alignment explanation
Indices: 77415687--77415747 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
77415677 AATCTCTCAC
77415687 CTTTTTCCATAGATTAGAAAAAAAATTGGACT
1 CTTTTTCCATAGATTAGAAAAAAAATTGGACT
77415719 CTTTTTCCATAGATTA-AAAAAAAATTGGA
1 CTTTTTCCATAGATTAGAAAAAAAATTGGA
77415748 TTTACATTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 13 0.45
32 16 0.55
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.34
Consensus pattern (32 bp):
CTTTTTCCATAGATTAGAAAAAAAATTGGACT
Found at i:77431551 original size:24 final size:25
Alignment explanation
Indices: 77431485--77431552 Score: 72
Period size: 24 Copynumber: 2.8 Consensus size: 25
77431475 CCTTCCCCTT
*
77431485 TCTTTT-CCTTTTCTCTTC-TTTCC
1 TCTTTTCCCCTTTCTCTTCTTTTCC
* *
77431508 TC-CTTCTCCCTTTCTATTCTTTTCC
1 TCTTTTC-CCCTTTCTCTTCTTTTCC
77431533 TCTTTTCCCCTTT-TCTTCTT
1 TCTTTTCCCCTTTCTCTTCTT
77431553 CCCCTCCGAC
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
22 2 0.06
23 2 0.06
24 16 0.44
25 13 0.36
26 3 0.08
ACGTcount: A:0.01, C:0.37, G:0.00, T:0.62
Consensus pattern (25 bp):
TCTTTTCCCCTTTCTCTTCTTTTCC
Found at i:77433522 original size:15 final size:15
Alignment explanation
Indices: 77433502--77433538 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
77433492 GTTCTACTCG
77433502 ACCACGACACCGACC
1 ACCACGACACCGACC
*
77433517 ACCACGACACTGACC
1 ACCACGACACCGACC
77433532 ACCACGA
1 ACCACGA
77433539 TAACCTCTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.35, C:0.49, G:0.14, T:0.03
Consensus pattern (15 bp):
ACCACGACACCGACC
Found at i:77435349 original size:30 final size:30
Alignment explanation
Indices: 77435314--77435371 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
77435304 TAGGCACTTC
*
77435314 CACACGGATAATCCACATGCCCGTGTGTGA
1 CACACGGATAAGCCACATGCCCGTGTGTGA
* *
77435344 CACACGGGTAGGCCACATGCCCGTGTGT
1 CACACGGATAAGCCACATGCCCGTGTGT
77435372 CATGGCCGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (30 bp):
CACACGGATAAGCCACATGCCCGTGTGTGA
Found at i:77438559 original size:25 final size:25
Alignment explanation
Indices: 77438531--77438583 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
77438521 TAGGTTTAAG
77438531 CTTATGAGTAAGATCATTCAAAATT
1 CTTATGAGTAAGATCATTCAAAATT
77438556 CTTATGAGTAAGATCATTCAAAATT
1 CTTATGAGTAAGATCATTCAAAATT
77438581 CTT
1 CTT
77438584 TCTTAATTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.38, C:0.13, G:0.11, T:0.38
Consensus pattern (25 bp):
CTTATGAGTAAGATCATTCAAAATT
Found at i:77447272 original size:14 final size:14
Alignment explanation
Indices: 77447253--77447292 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
77447243 AATATTTTTT
77447253 TATATATTATATTA
1 TATATATTATATTA
*
77447267 TATATATCATATTA
1 TATATATTATATTA
*
77447281 TATATTTTATAT
1 TATATATTATAT
77447293 ATTTTTATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (14 bp):
TATATATTATATTA
Found at i:77449436 original size:14 final size:13
Alignment explanation
Indices: 77449407--77449448 Score: 59
Period size: 13 Copynumber: 3.2 Consensus size: 13
77449397 AAAAATTATA
77449407 AAATTTGAATTAC
1 AAATTTGAATTAC
77449420 AAATTT-AATTAGCC
1 AAATTTGAATTA--C
77449434 AAATTTGAATTAC
1 AAATTTGAATTAC
77449447 AA
1 AA
77449449 GTTTTAAGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
12 5 0.19
13 9 0.35
14 7 0.27
15 5 0.19
ACGTcount: A:0.48, C:0.10, G:0.07, T:0.36
Consensus pattern (13 bp):
AAATTTGAATTAC
Found at i:77452993 original size:24 final size:28
Alignment explanation
Indices: 77452960--77453014 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
77452950 GTATATATTG
77452960 TATATGTTTT-ATA-TA-T-GTTATATA
1 TATATGTTTTAATATTACTAGTTATATA
*
77452984 TATATTTTTTAATATTACTAGTTATATA
1 TATATGTTTTAATATTACTAGTTATATA
77453012 TAT
1 TAT
77453015 TTCTTATACA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
24 9 0.35
25 3 0.12
26 2 0.08
27 1 0.04
28 11 0.42
ACGTcount: A:0.35, C:0.02, G:0.05, T:0.58
Consensus pattern (28 bp):
TATATGTTTTAATATTACTAGTTATATA
Found at i:77453050 original size:25 final size:23
Alignment explanation
Indices: 77453011--77453068 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 23
77453001 CTAGTTATAT
77453011 ATATTTCTTATACAT-TTCCATGTAC
1 ATATTT-TTATACATCTT--ATGTAC
*
77453036 ATATTTTTATAACATCTTATGTAT
1 ATATTTTTAT-ACATCTTATGTAC
77453060 ATATTTTTA
1 ATATTTTTA
77453069 AATACTATAT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
24 18 0.60
25 10 0.33
26 2 0.07
ACGTcount: A:0.31, C:0.12, G:0.03, T:0.53
Consensus pattern (23 bp):
ATATTTTTATACATCTTATGTAC
Found at i:77465629 original size:166 final size:163
Alignment explanation
Indices: 77465360--77465917 Score: 603
Period size: 166 Copynumber: 3.4 Consensus size: 163
77465350 TGTTCCAAAG
** * * * *
77465360 ATCAACTCATAGGGCAAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCGATTTCTGCT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTTTGTT
* * *
77465425 TCCAATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
66 TTCAATTTCTGTTCTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
*
77465490 CTAAGGTAATTTCAATTTCTGTTTGTCAAAAAA
131 CTGAGGTAATTTCAATTTCTGTTTGTCAAAAAA
* * * *
77465523 ATCAACTCATATCGCGAGAGGTGAGTTGAGCCT-TGGCTCACATGCTGAGGTCTTTTCAATTTTT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-GCAC--GCTGAGGTATTTTCAATTTTT
* *
77465587 GTTTTTCAATTTCTGTTCGTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGG
63 G-TTTTCAATTTCTGTTCTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
*
77465652 CACGCTGAGGTATTTTCGATTTCTGCTTTTCAATTTCTGTCTT-TCAAAATA
127 CACGCTGAGGTA------A--------TTTCAATTTCTGT-TTGTCAAAAAA
*
77465703 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG-----T-AA-TTTTG--
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTTTGTT
*
77465759 ----ATCTCTGTT-TTC--GAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
66 TTCAATTTCTGTTCTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
77465817 CTGAGGTAATTTCAATTTCTGTTTGTCAAAAAAA
131 CTGAGGTAATTTCAATTTCTGTTTGTC-AAAAAA
* * **
77465851 ATCAACTCATATTGCGGGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATCATTGTT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTTTGTT
77465916 TT
66 TT
77465918 TCAAGAATTT
Statistics
Matches: 334, Mismatches: 28, Indels: 70
0.77 0.06 0.16
Matches are distributed among these distances:
146 2 0.01
147 15 0.04
148 50 0.15
153 1 0.00
154 2 0.01
155 4 0.01
161 53 0.16
162 2 0.01
163 35 0.10
164 8 0.02
165 19 0.06
166 68 0.20
171 5 0.01
172 3 0.01
173 1 0.00
178 7 0.02
180 55 0.16
181 4 0.01
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (163 bp):
ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTTTGTT
TTCAATTTCTGTTCTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
CTGAGGTAATTTCAATTTCTGTTTGTCAAAAAA
Found at i:77465709 original size:89 final size:86
Alignment explanation
Indices: 77465499--77465770 Score: 341
Period size: 89 Copynumber: 3.0 Consensus size: 86
77465489 GCTAAGGTAA
* *
77465499 TTTCAATTTCTGTTTGTCAAAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCT-TGGCTCA
1 TTTCAATTTCTGTTT-TC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---A
* * * *
77465563 CATGCTGAGGTCTTTTCAATTTTTGTT
61 CACGCTGAGGTATTTTCGATTTCTG-T
* *
77465590 TTTCAATTTCTGTTCGTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC
1 TTTCAATTTCTGTT-TTCAA-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
77465655 GCTGAGGTATTTTCGATTTCTGCT
64 GCTGAGGTATTTTCGATTTCTG-T
77465679 TTTCAATTTCTGTCTTTCAAAATAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
1 TTTCAATTTCTGT-TTTCAAAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
*
77465744 GCTGAGGTAATTTT-GATCTCTGT
64 GCTGAGGT-ATTTTCGATTTCTGT
77465767 TTTC
1 TTTC
77465771 GAAAATCAAC
Statistics
Matches: 163, Mismatches: 12, Indels: 15
0.86 0.06 0.08
Matches are distributed among these distances:
88 7 0.04
89 95 0.58
90 8 0.05
91 51 0.31
92 2 0.01
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.36
Consensus pattern (86 bp):
TTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
TGAGGTATTTTCGATTTCTGT
Found at i:77465807 original size:72 final size:71
Alignment explanation
Indices: 77465702--77465961 Score: 308
Period size: 72 Copynumber: 3.5 Consensus size: 71
77465692 CTTTCAAAAT
*
77465702 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTTGATCTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTTAATCTCTGT
77465767 TTTCGAA
66 TTTC-AA
* *
77465774 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTTAATCTCTGT
77465839 TTGTCAAAAAA
66 TT-TC----AA
* * *
77465850 AATCAACTCATATTGCGGGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGT-ATTTTCAATCAT-T
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTT-AATC-TCT
77465913 GTTTTTCAA
64 G-TTTTCAA
** * * * *
77465922 GAATTTATTCATATTTCTAGAGGTGAATTGAGCCTCAGGA
1 -AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
77465962 TCATACGCCG
Statistics
Matches: 162, Mismatches: 18, Indels: 15
0.83 0.09 0.08
Matches are distributed among these distances:
72 66 0.41
73 32 0.20
75 4 0.02
76 56 0.35
77 4 0.02
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (71 bp):
AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTTAATCTCTGT
TTTCAA
Found at i:77465898 original size:76 final size:74
Alignment explanation
Indices: 77465679--77465908 Score: 338
Period size: 72 Copynumber: 3.1 Consensus size: 74
77465669 GATTTCTGCT
*
77465679 TTTCAATTTCTGTCTTTCAAAATAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
1 TTTCAATTTCTGT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
77465744 GCTGAGGTAA
65 GCTGAGGTAA
** * *
77465754 TTTTGATCTCTGTTTTC--GAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
1 TTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
77465817 CTGAGGTAA
66 CTGAGGTAA
* * *
77465826 TTTCAATTTCTGTTTGTCAAAAAAAATCAACTCATATTGCGGGAGGTGAGTTGAGCCTCGGGGCA
1 TTTCAATTTCTGTTT-TC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
*
77465891 CGCTGAGGTAT
64 CGCTGAGGTAA
77465902 TTTCAAT
1 TTTCAAT
77465909 CATTGTTTTT
Statistics
Matches: 138, Mismatches: 13, Indels: 7
0.87 0.08 0.04
Matches are distributed among these distances:
72 65 0.47
73 2 0.01
74 4 0.03
75 10 0.07
76 57 0.41
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.31
Consensus pattern (74 bp):
TTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
CTGAGGTAA
Found at i:77465916 original size:76 final size:75
Alignment explanation
Indices: 77465678--77465917 Score: 321
Period size: 76 Copynumber: 3.2 Consensus size: 75
77465668 CGATTTCTGC
* *
77465678 TTTTCAATTTCTGTCTTTC-AAAATAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
1 TTTTCAATCTCTGT-TTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
77465742 ACGCTGAGGTAA
65 ACGCTGAGGT-A
* *
77465754 TTTT-GATCTCTGTTTTC---GAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
1 TTTTCAATCTCTGTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
77465815 CGCTGAGGTA
66 CGCTGAGGTA
* * * * *
77465825 ATTTCAATTTCTGTTTGTCAAAAAAAATCAACTCATATTGCGGGAGGTGAGTTGAGCCTCGGGGC
1 TTTTCAATCTCTGTTT-TCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
77465890 ACGCTGAGGTA
65 ACGCTGAGGTA
77465901 TTTTCAATCAT-TGTTTT
1 TTTTCAATC-TCTGTTTT
77465918 TCAAGAATTT
Statistics
Matches: 145, Mismatches: 13, Indels: 13
0.85 0.08 0.08
Matches are distributed among these distances:
71 4 0.03
72 60 0.41
73 2 0.01
74 4 0.03
75 8 0.06
76 66 0.46
77 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (75 bp):
TTTTCAATCTCTGTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
CGCTGAGGTA
Found at i:77467201 original size:18 final size:18
Alignment explanation
Indices: 77467175--77467213 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
77467165 CTCCCTTCTC
*
77467175 TCTCCCTTCTCTCTCCCT
1 TCTCCCTTCCCTCTCCCT
* *
77467193 TCTCTCTTCCCTCTCTCT
1 TCTCCCTTCCCTCTCCCT
77467211 TCT
1 TCT
77467214 TTTTTTTCTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (18 bp):
TCTCCCTTCCCTCTCCCT
Found at i:77467207 original size:22 final size:22
Alignment explanation
Indices: 77467156--77467210 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
77467146 GGCCGGATTC
* *
77467156 CCCTTCCCCCTCCCTTCTCTCT
1 CCCTTCTCTCTCCCTTCTCTCT
77467178 CCCTTCTCTCTCCCTTCTCTCTT
1 CCCTTCTCTCTCCCTTCTCTC-T
77467201 CCC-TCTCTCT
1 CCCTTCTCTCT
77467211 TCTTTTTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
22 26 0.87
23 4 0.13
ACGTcount: A:0.00, C:0.58, G:0.00, T:0.42
Consensus pattern (22 bp):
CCCTTCTCTCTCCCTTCTCTCT
Found at i:77467212 original size:11 final size:11
Alignment explanation
Indices: 77467165--77467210 Score: 76
Period size: 11 Copynumber: 4.2 Consensus size: 11
77467155 CCCCTTCCCC
77467165 CTCCCTTCTCT
1 CTCCCTTCTCT
77467176 CTCCCTTCTCT
1 CTCCCTTCTCT
77467187 CTCCCTTCTCT
1 CTCCCTTCTCT
77467198 CTTCCC-TCTCT
1 C-TCCCTTCTCT
77467209 CT
1 CT
77467211 TCTTTTTTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
10 1 0.03
11 29 0.85
12 4 0.12
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (11 bp):
CTCCCTTCTCT
Found at i:77468288 original size:36 final size:35
Alignment explanation
Indices: 77468241--77468326 Score: 93
Period size: 36 Copynumber: 2.4 Consensus size: 35
77468231 TTATACCATC
* *
77468241 TTATGTATATATTTTTAAATACTATATT-GTATATG
1 TTATATATATATTTTT-AATACTATATTAGTATATA
* *
77468276 TCTATATATATATTCTTAGTACTATATTACGTATATA
1 T-TATATATATATTTTTAATACTATATTA-GTATATA
*
77468313 TTATGTATATATTT
1 TTATATATATATTT
77468327 ATTTTTACCC
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
35 11 0.26
36 24 0.57
37 7 0.17
ACGTcount: A:0.34, C:0.06, G:0.07, T:0.53
Consensus pattern (35 bp):
TTATATATATATTTTTAATACTATATTAGTATATA
Found at i:77468529 original size:39 final size:39
Alignment explanation
Indices: 77468485--77468565 Score: 162
Period size: 39 Copynumber: 2.1 Consensus size: 39
77468475 AGTATATACT
77468485 TCAAACATTATATATAAGTTTACATACATACTCTTAATA
1 TCAAACATTATATATAAGTTTACATACATACTCTTAATA
77468524 TCAAACATTATATATAAGTTTACATACATACTCTTAATA
1 TCAAACATTATATATAAGTTTACATACATACTCTTAATA
77468563 TCA
1 TCA
77468566 TGTGTATACA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.43, C:0.16, G:0.02, T:0.38
Consensus pattern (39 bp):
TCAAACATTATATATAAGTTTACATACATACTCTTAATA
Found at i:77482109 original size:41 final size:41
Alignment explanation
Indices: 77481825--77482101 Score: 423
Period size: 41 Copynumber: 6.8 Consensus size: 41
77481815 ACATAAAATT
* *
77481825 TGCTAGGC-ATAAAGCCT-AGTATAATACACCAGCACAGAGCC
1 TGCTAGGCAAT-AAGCCTGA-TATAATACACCGGCACAAAGCC
*
77481866 TGCTAGGCAATAAGCCTGATATAATACACTGGCACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
* *
77481907 TGCTAGGCAATAAACCTGATTTAATACACCGGCACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
* * *
77481948 TACTAGGCAATAAGCCTGATTTAAAACACCGGCACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
* * *
77481989 TACTAGGCAATAAGCCTGATTTAAAACACCGGCACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
77482030 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
77482071 TGCTAGGCAATAAGCCTGATATAATACACCG
1 TGCTAGGCAATAAGCCTGATATAATACACCG
77482102 ATACAAAGTC
Statistics
Matches: 222, Mismatches: 12, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
41 219 0.99
42 3 0.01
ACGTcount: A:0.37, C:0.26, G:0.18, T:0.18
Consensus pattern (41 bp):
TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
Found at i:77499959 original size:24 final size:23
Alignment explanation
Indices: 77499923--77499995 Score: 89
Period size: 24 Copynumber: 3.2 Consensus size: 23
77499913 AAATGATACA
*
77499923 ATGATAATGGTTAGGTAAATGTTC
1 ATGATAATAGTTAGGTAAAT-TTC
77499947 ATGATAATAGTTAGGTAAA-TTC
1 ATGATAATAGTTAGGTAAATTTC
*
77499969 ATGAT-A-AGGTAGGTAAATTTCC
1 ATGATAATAGTTAGGTAAATTT-C
77499991 ATGAT
1 ATGAT
77499996 GGAATTTCAT
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
20 10 0.22
21 3 0.07
22 14 0.31
24 18 0.40
ACGTcount: A:0.37, C:0.05, G:0.22, T:0.36
Consensus pattern (23 bp):
ATGATAATAGTTAGGTAAATTTC
Found at i:77499993 original size:22 final size:21
Alignment explanation
Indices: 77499923--77499995 Score: 76
Period size: 22 Copynumber: 3.2 Consensus size: 21
77499913 AAATGATACA
77499923 ATGATAATGGTTAGGTAAATGTTC
1 ATGATAA-GG-TAGGTAAAT-TTC
*
77499947 ATGATAATAGTTAGGTAAA-TTC
1 ATGAT-A-AGGTAGGTAAATTTC
77499969 ATGATAAGGTAGGTAAATTTCC
1 ATGATAAGGTAGGTAAATTT-C
77499991 ATGAT
1 ATGAT
77499996 GGAATTTCAT
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
20 10 0.23
21 3 0.07
22 14 0.33
24 13 0.30
25 2 0.05
26 1 0.02
ACGTcount: A:0.37, C:0.05, G:0.22, T:0.36
Consensus pattern (21 bp):
ATGATAAGGTAGGTAAATTTC
Found at i:77503988 original size:47 final size:47
Alignment explanation
Indices: 77503937--77504468 Score: 749
Period size: 47 Copynumber: 11.1 Consensus size: 47
77503927 TTAGGATTTT
*
77503937 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
***
77503984 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCGTATGTGTGATAAGGCCGAATGGCCA
*
77504035 ATGTGATGAATGTGAACATGCGTACGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* * *
77504082 CTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
***
77504129 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCGTATGTGTGATAAGGCCGAATGGCCA
77504180 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*** *
77504227 ATGTGATGAATGTGAACCTATATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-C---ATGCGTATGTGTGATAAGGCCGAATGGCCA
77504278 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
77504325 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* * *
77504372 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
** * * *
77504419 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
77504466 ATG
1 ATG
77504469 CGAAACGTGT
Statistics
Matches: 437, Mismatches: 36, Indels: 24
0.88 0.07 0.05
Matches are distributed among these distances:
47 304 0.70
48 1 0.00
49 4 0.01
50 1 0.00
51 127 0.29
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:77504048 original size:145 final size:145
Alignment explanation
Indices: 77503938--77504468 Score: 688
Period size: 145 Copynumber: 3.7 Consensus size: 145
77503928 TAGGATTTTA
77503938 TGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCC
1 TGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCC
* *
77504003 GTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG-AACATGCGTACGTGTGAT
66 GTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAACATACGTACATGTGAT
77504067 AAGGCCGAATGGCCAC
131 AAGG-CGAATGGCCAC
*
77504083 TGTGATGGATGTGAACATGCGTATGTGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAACCC
1 TGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCC
* **
77504148 GTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG-AACATGCGTATGTGTGAT
66 GTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAACATACGTACATGTGAT
*
77504212 AAGGCCGAATGGCCAA
131 AAGG-CGAATGGCCAC
* *** *
77504228 TGTGATGAATGTGAACCTATATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 TGTGATGGATGTGAA-C---ATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*** * **
77504293 A--C--ATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG-AACATGCGTATGTG
62 ACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAACATACGTACATG
*
77504353 TGATAAGGCCGAATGGCCAA
127 TGATAAGG-CGAATGGCCAC
* * * * **
77504373 TGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACAT
1 TGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCC
*
77504438 G-A-ATATATGTG-G-TAAGGCCGAATGGCTAATG
66 GTATATATATGTGTGATAAGGCCGAATGGCCAATG
77504469 CGAAACGTGT
Statistics
Matches: 357, Mismatches: 22, Indels: 18
0.90 0.06 0.05
Matches are distributed among these distances:
141 59 0.17
142 1 0.00
143 6 0.02
144 2 0.01
145 246 0.69
146 1 0.00
147 1 0.00
149 41 0.11
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.26
Consensus pattern (145 bp):
TGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCC
GTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAACATACGTACATGTGAT
AAGGCGAATGGCCAC
Found at i:77504055 original size:98 final size:94
Alignment explanation
Indices: 77503937--77504468 Score: 749
Period size: 98 Copynumber: 5.5 Consensus size: 94
77503927 TTAGGATTTT
* *
77503937 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA--
***
77504002 CGTATATATATGTGTGATAAGGCCGAATGGCCA
64 C--ATGCGTATGTGTGATAAGGCCGAATGGCCA
* * * *
77504035 ATGTGATGAATGTGAACATGCGTACGTGTGATAAGGCCGAATGGCCACTGTGATGGATGTGAACA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
*
77504100 TGCGTATGTGTGATAAGGCTGAATGGCCA
66 TGCGTATGTGTGATAAGGCCGAATGGCCA
**
77504129 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
1 ATGTGATGAATGTGAA--C--ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
77504194 AACATGCGTATGTGTGATAAGGCCGAATGGCCA
62 AACATGCGTATGTGTGATAAGGCCGAATGGCCA
** *
77504227 ATGTGATGAATGTGAACCTATATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
1 ATGTGATGAATGTGAA-C---ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
77504292 AACATGCGTATGTGTGATAAGGCCGAATGGCCA
62 AACATGCGTATGTGTGATAAGGCCGAATGGCCA
*
77504325 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* * *
77504390 TGCATATATGAGATAAGGCCGAATGGCCA
66 TGCGTATGTGTGATAAGGCCGAATGGCCA
* * * *
77504419 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTAATG
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATG
77504469 CGAAACGTGT
Statistics
Matches: 400, Mismatches: 29, Indels: 14
0.90 0.07 0.03
Matches are distributed among these distances:
94 157 0.39
96 2 0.00
97 3 0.01
98 238 0.60
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.26
Consensus pattern (94 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:77504184 original size:24 final size:24
Alignment explanation
Indices: 77504156--77504231 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
77504146 CCGTATATAT
77504156 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
* * **
77504180 ATGTGATGA-ATGTG--AACAT-GCGT
1 ATGTG-TGATAAG-GCCGA-ATGGCCA
77504203 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
77504227 ATGTG
1 ATGTG
77504232 ATGAATGTGA
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
22 4 0.11
23 12 0.32
24 17 0.46
25 4 0.11
ACGTcount: A:0.29, C:0.13, G:0.33, T:0.25
Consensus pattern (24 bp):
ATGTGTGATAAGGCCGAATGGCCA
Found at i:77504305 original size:23 final size:23
Alignment explanation
Indices: 77504278--77504352 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
77504268 CGAATGGCCA
77504278 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
* * **
77504301 ATGTG-TGATAAG-G-CCGAATGGCCA
1 ATGTGATGA-ATGTGAAC--AT-GCGT
77504325 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
77504348 ATGTG
1 ATGTG
77504353 TGATAAGGCC
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
21 1 0.03
22 4 0.11
23 16 0.43
24 11 0.30
25 4 0.11
26 1 0.03
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.28
Consensus pattern (23 bp):
ATGTGATGAATGTGAACATGCGT
Found at i:77504531 original size:46 final size:46
Alignment explanation
Indices: 77504442--77504532 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
77504432 GAACATGAAT
* * * *
77504442 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
* * *
77504488 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTACGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATG
77504533 TGTATATATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.33, C:0.10, G:0.32, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
Done.