Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 243 of 255
Found at i:79245666 original size:59 final size:60
Alignment explanation
Indices: 79245556--79245674 Score: 170
Period size: 59 Copynumber: 2.0 Consensus size: 60
79245546 TTAAAAAAAA
* * * *
79245556 TCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATTACACACTGTGGTATTTT-AATT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACACCGAGGTATTTTCAATT
*
79245615 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA-CACACGCCGAGGTATTTTCAATT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GATCACACACCGAGGTATTTTCAATT
79245675 AAGCCTTTTG
Statistics
Matches: 53, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
59 47 0.89
60 6 0.11
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (60 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACACCGAGGTATTTTCAATT
Found at i:79245810 original size:88 final size:87
Alignment explanation
Indices: 79245615--79245857 Score: 292
Period size: 88 Copynumber: 2.7 Consensus size: 87
79245605 TATTTTAATT
*
79245615 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACGCCGAGGTATTTTCAATTAAGC-
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACA--CCGAGGTATTTTCAATT--TCT
* * *
79245679 CTTTTGATTTCTGTTTTTCAAAAAAA
62 GTTTTCATTTATGTTTTTCAAAAAAA
* *
79245705 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACCGAGGTATTTTCCATTTCTGTTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACCGAGGTATTTTCAATTTCTGTTT
* *
79245770 TCATTATTATGTTTTT-GAAAGAA
66 TCA-T-TTATGTTTTTCAAAAAAA
** * ** *
79245793 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAATTTCAATTTCTGTTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACCGAGGTATTTTCAATTTCTGTTT
79245858 CAAAAATTCA
Statistics
Matches: 134, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
86 1 0.01
87 5 0.04
88 79 0.59
89 9 0.07
90 40 0.30
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.35
Consensus pattern (87 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACCGAGGTATTTTCAATTTCTGTTT
TCATTTATGTTTTTCAAAAAAA
Found at i:79246043 original size:74 final size:72
Alignment explanation
Indices: 79245782--79246175 Score: 520
Period size: 72 Copynumber: 5.4 Consensus size: 72
79245772 ATTATTATGT
*
79245782 TTTTGAAAGAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAATTTC
1 TTTTCAAA-AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAATTTC
79245847 AATTTCTG
65 AATTTCTG
*
79245855 -TTTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTC
1 TTTTCAAAAA-TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAATTTC
79245919 AATTTCTG
65 AATTTCTG
* * *
79245927 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAACACACATTGAGGTATTTTCA
1 TTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAATTTCA
*
79245992 ATTTTTTG
66 A-TTTCTG
** * *
79246000 CTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTAATTTC
1 -TTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAATTTC
79246065 AATTTCTG
65 AATTTCTG
** ** * *** *
79246073 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTC
1 -TTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAATTTC
* *
79246138 AAATTCTA
65 AATTTCTG
*
79246146 CTTTCAAAAAAATCAACTCATATTGCGAGA
1 TTTTC--AAAAATCAACTCATATTGCGAGA
79246176 GGTGGGTTGA
Statistics
Matches: 291, Mismatches: 24, Indels: 11
0.89 0.07 0.03
Matches are distributed among these distances:
71 2 0.01
72 124 0.43
73 83 0.29
74 82 0.28
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.32
Consensus pattern (72 bp):
TTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAATTTCA
ATTTCTG
Found at i:79246137 original size:147 final size:145
Alignment explanation
Indices: 79245779--79246185 Score: 557
Period size: 147 Copynumber: 2.8 Consensus size: 145
79245769 TTCATTATTA
* *
79245779 TGTTTTTGAAAGAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAAT
1 TGTTTTTCAAA-AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTATT
** **
79245844 TTCAATTTCTG-TTTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTT
65 TTCAATTTCTGCTTTCAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACT
79245908 GAGGTAATTTCAATTTC
129 GAGGTAATTTCAATTTC
* *
79245925 TG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAACACACATTGAGGTATTT
1 TGTTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTATTT
* *
79245989 TCAATTTTTTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACT
66 TCAA-TTTCTGC-TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACT
79246054 GAGGTAATTTCAATTTC
129 GAGGTAATTTCAATTTC
** ** * ***
79246071 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTT
1 TGTTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTATTT
* * *
79246136 TCAAATTCTACTTTCAAAAAAATCAACTCATATTGCGAGAGGTGGGTTGA
66 TCAATTTCTGCTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
79246186 ACCTTTTAAT
Statistics
Matches: 231, Mismatches: 24, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
144 55 0.24
145 16 0.07
146 63 0.27
147 97 0.42
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (145 bp):
TGTTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTATTT
TCAATTTCTGCTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGA
GGTAATTTCAATTTC
Found at i:79246621 original size:217 final size:216
Alignment explanation
Indices: 79246153--79246560 Score: 543
Period size: 217 Copynumber: 1.9 Consensus size: 216
79246143 CTACTTTCAA
*
79246153 AAAAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGCT
1 AAAAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAACT
* ** ** * ***
79246218 CATATTGCTAGAGGTGAGTTGAGCCTTGGGGCACGCTGAGGTATTTTCAATTTTTTGTGTGTTTT
66 CATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTGAGGTATTTTCAATTTTCTGTGTGTAAA
** * * * * * *
79246283 AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTTTAAAAT
131 AAAATCAACTCATATTGCGAAAAGTAAGTTGAGCCTCGGGTCACATGCCAAGATATTTTCAAAAT
79246348 CTGTTTGGCAAATTCTGTTTTC
196 CTGTTT-GCAAATTCTGTTTTC
*
79246370 AAAAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTGAAAATCAACT
1 AAAAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAACT
79246435 CATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTGAGGTAATTTT-AA-TTTCTGT-TGTCA
66 CATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTGAGGT-ATTTTCAATTTTCTGTGTGT--
* ** * *
79246497 AAAAAAATCAACTCATATTGTGAAAAGTAAGTTGAGCCTTTGTTCACATGCTAAGATATTTTCA
128 AAAAAAATCAACTCATATTGCGAAAAGTAAGTTGAGCCTCGGGTCACATGCCAAGATATTTTCA
79246561 GTTTTTGTTT
Statistics
Matches: 164, Mismatches: 24, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
215 3 0.02
216 6 0.04
217 150 0.91
218 5 0.03
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.36
Consensus pattern (216 bp):
AAAAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAACT
CATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTGAGGTATTTTCAATTTTCTGTGTGTAAA
AAAATCAACTCATATTGCGAAAAGTAAGTTGAGCCTCGGGTCACATGCCAAGATATTTTCAAAAT
CTGTTTGCAAATTCTGTTTTC
Found at i:79247288 original size:35 final size:35
Alignment explanation
Indices: 79247242--79247310 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
79247232 ACTTGCCTCT
79247242 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCAC
1 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCAC
79247277 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
1 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
79247311 TCACACACCC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.17, C:0.51, G:0.12, T:0.20
Consensus pattern (35 bp):
TCCCACTCTCCCATGCTGTCTGCCACCAGCACCAC
Found at i:79247337 original size:34 final size:35
Alignment explanation
Indices: 79247259--79247338 Score: 99
Period size: 34 Copynumber: 2.3 Consensus size: 35
79247249 CTCCCATGCT
* * * * *
79247259 GTCTGCCACCAGCACCACTCCCACTCTCCCATGCT
1 GTCTGCCACCAGCACCACTCACACACCCCCATACC
79247294 GTCTGCCACCAGCACCA-TCACACACCCCCATACC
1 GTCTGCCACCAGCACCACTCACACACCCCCATACC
*
79247328 GTCTACCACCA
1 GTCTGCCACCA
79247339 CTATGCCTTT
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
34 22 0.56
35 17 0.44
ACGTcount: A:0.23, C:0.51, G:0.10, T:0.16
Consensus pattern (35 bp):
GTCTGCCACCAGCACCACTCACACACCCCCATACC
Found at i:79247700 original size:9 final size:8
Alignment explanation
Indices: 79247686--79247733 Score: 51
Period size: 9 Copynumber: 5.6 Consensus size: 8
79247676 TAATATATAT
79247686 AAAAAATA
1 AAAAAATA
79247694 CAAAAAAGTA
1 -AAAAAA-TA
* *
79247704 TAAACATA
1 AAAAAATA
79247712 AAAAAATAA
1 AAAAAAT-A
79247721 AAAAAATA
1 AAAAAATA
79247729 AAAAA
1 AAAAA
79247734 TATTTTTCAC
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
8 13 0.39
9 18 0.55
10 2 0.06
ACGTcount: A:0.81, C:0.04, G:0.02, T:0.12
Consensus pattern (8 bp):
AAAAAATA
Found at i:79247838 original size:11 final size:11
Alignment explanation
Indices: 79247822--79247856 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
79247812 CCCTTCCCCC
79247822 CTCCCTTCTCT
1 CTCCCTTCTCT
79247833 CTCCCTTCTCT
1 CTCCCTTCTCT
79247844 CTTCCC-TCTCT
1 C-TCCCTTCTCT
79247855 CT
1 CT
79247857 TCTTTTTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.04
11 18 0.78
12 4 0.17
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (11 bp):
CTCCCTTCTCT
Found at i:79248344 original size:3 final size:3
Alignment explanation
Indices: 79248336--79248360 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
79248326 TGTATTTCAA
79248336 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
79248361 GTACATTAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:79250102 original size:20 final size:20
Alignment explanation
Indices: 79250077--79250114 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
79250067 TATAGTTTTG
79250077 AGTTTAAAGTTCGAGATTCA
1 AGTTTAAAGTTCGAGATTCA
* *
79250097 AGTTTAGAGTTTGAGATT
1 AGTTTAAAGTTCGAGATT
79250115 GAAATTAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.05, G:0.24, T:0.39
Consensus pattern (20 bp):
AGTTTAAAGTTCGAGATTCA
Found at i:79250148 original size:17 final size:17
Alignment explanation
Indices: 79250126--79250160 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
79250116 AAATTAAAAA
79250126 AATTATATATCAATAAT
1 AATTATATATCAATAAT
79250143 AATTATATATCAATAAT
1 AATTATATATCAATAAT
79250160 A
1 A
79250161 TAAAAAATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (17 bp):
AATTATATATCAATAAT
Found at i:79250448 original size:15 final size:15
Alignment explanation
Indices: 79250430--79250460 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
79250420 TTTTTTTATC
*
79250430 AATTTATAAAGTAAA
1 AATTTATAAACTAAA
79250445 AATTTATAAACTAAA
1 AATTTATAAACTAAA
79250460 A
1 A
79250461 TATACTCTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.32
Consensus pattern (15 bp):
AATTTATAAACTAAA
Found at i:79254740 original size:17 final size:17
Alignment explanation
Indices: 79254714--79254749 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
79254704 TTCTAATGTA
* *
79254714 TTGTTTCAATCAAGTCT
1 TTGTTACAATCAAATCT
79254731 TTGTTACAATCAAATCT
1 TTGTTACAATCAAATCT
79254748 TT
1 TT
79254750 TCAGCTGTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.28, C:0.17, G:0.08, T:0.47
Consensus pattern (17 bp):
TTGTTACAATCAAATCT
Found at i:79262206 original size:27 final size:27
Alignment explanation
Indices: 79262165--79262489 Score: 560
Period size: 27 Copynumber: 12.0 Consensus size: 27
79262155 AAATCAGAAG
** *
79262165 AGAAATCTAAAGCTACCGAGTCGAGCA
1 AGAAATCTACTGCTACTGAGTCGAGCA
79262192 AGAAATCTACTGCTACTGAGTCGAGCA
1 AGAAATCTACTGCTACTGAGTCGAGCA
*
79262219 AGAAATCTACTGCTACTGAGTTGAGCA
1 AGAAATCTACTGCTACTGAGTCGAGCA
79262246 AGAAATCTACTGCTACTGAGTCGAGCA
1 AGAAATCTACTGCTACTGAGTCGAGCA
79262273 AGAAATCTACTGCTACTGAGTCGAGCA
1 AGAAATCTACTGCTACTGAGTCGAGCA
79262300 AGAAATCTACTGCTACTGAGTCGAGCA
1 AGAAATCTACTGCTACTGAGTCGAGCA
*
79262327 AGAAATCTACTGCTACTGAGTCGAGAA
1 AGAAATCTACTGCTACTGAGTCGAGCA
*
79262354 AGAAATCTAGTGCTACTGAGTCGAGCA
1 AGAAATCTACTGCTACTGAGTCGAGCA
79262381 AGAAATCTACTGCTACTGAGTCGAGCA
1 AGAAATCTACTGCTACTGAGTCGAGCA
* *
79262408 AGAAACCTACTGCTACTGAGTCAAGCA
1 AGAAATCTACTGCTACTGAGTCGAGCA
*
79262435 AGAAATCTACTGCTACTGAGTCAAGCA
1 AGAAATCTACTGCTACTGAGTCGAGCA
*
79262462 AGAAATCTACTGGTACTGAGTCGAGCA
1 AGAAATCTACTGCTACTGAGTCGAGCA
79262489 A
1 A
79262490 TAATTTGACC
Statistics
Matches: 284, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 284 1.00
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.22
Consensus pattern (27 bp):
AGAAATCTACTGCTACTGAGTCGAGCA
Found at i:79264597 original size:51 final size:51
Alignment explanation
Indices: 79264520--79264663 Score: 189
Period size: 51 Copynumber: 2.8 Consensus size: 51
79264510 GTCTCGGTTT
* * * *
79264520 CCAATGGTTTAAAGAAGAACCCAGGAGAGAAGCGTGCACCTAGGAGAAGCG
1 CCAATGGTTTAAAGCAGAACCCAGGAGAGAAGCATACACCTAAGAGAAGCG
* * *
79264571 CCAATGGTTTAAAGCAGAACCGAGGAGAGCAGCATACACCTAAGAGAAGTG
1 CCAATGGTTTAAAGCAGAACCCAGGAGAGAAGCATACACCTAAGAGAAGCG
* * * *
79264622 CCAATGGTTTAAAGCAGAAACCAGAAGAGGATCATACACCTA
1 CCAATGGTTTAAAGCAGAACCCAGGAGAGAAGCATACACCTA
79264664 GAAGATGCAC
Statistics
Matches: 81, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
51 81 1.00
ACGTcount: A:0.40, C:0.20, G:0.26, T:0.14
Consensus pattern (51 bp):
CCAATGGTTTAAAGCAGAACCCAGGAGAGAAGCATACACCTAAGAGAAGCG
Found at i:79264767 original size:33 final size:33
Alignment explanation
Indices: 79264707--79264769 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 33
79264697 GTACTGCTAG
*
79264707 ATCACCTGCTAAATTACCCAAAGCCACTCCTAA
1 ATCACCTGCTAAATTACCCAAACCCACTCCTAA
**
79264740 ATCACCTGCTAAATTACCGGAACCCACTCC
1 ATCACCTGCTAAATTACCCAAACCCACTCC
79264770 CACACCTGGT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.33, C:0.38, G:0.08, T:0.21
Consensus pattern (33 bp):
ATCACCTGCTAAATTACCCAAACCCACTCCTAA
Found at i:79268037 original size:20 final size:20
Alignment explanation
Indices: 79267984--79268040 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 20
79267974 GATACCAAGT
*
79267984 AAGGTATCGATACTTTTGTGA
1 AAGGTATTGATAC-TTTGTGA
* * *
79268005 AAGGTACTAATACTTTGTTA
1 AAGGTATTGATACTTTGTGA
*
79268025 AGGGTATTGATACTTT
1 AAGGTATTGATACTTT
79268041 ATTTAGATAT
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
20 19 0.66
21 10 0.34
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (20 bp):
AAGGTATTGATACTTTGTGA
Found at i:79273010 original size:39 final size:41
Alignment explanation
Indices: 79272967--79273054 Score: 99
Period size: 43 Copynumber: 2.1 Consensus size: 41
79272957 ATAAAAAATA
* *
79272967 AAATA-TATTAT-TAAAACTAGATCAATGGATTAATTGTCT
1 AAATACTATTATCTAAAACTAGATCAATAGATTAATCGTCT
* * *
79273006 AAATACTTTTTTTCGTAAAACTAGATCAATAGATTAGTCGTCT
1 AAATAC-TATTATC-TAAAACTAGATCAATAGATTAATCGTCT
79273049 AAATAC
1 AAATAC
79273055 ATTTTTGATA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
39 5 0.12
41 4 0.10
43 31 0.77
ACGTcount: A:0.41, C:0.11, G:0.10, T:0.38
Consensus pattern (41 bp):
AAATACTATTATCTAAAACTAGATCAATAGATTAATCGTCT
Found at i:79273026 original size:43 final size:43
Alignment explanation
Indices: 79272978--79273060 Score: 130
Period size: 43 Copynumber: 1.9 Consensus size: 43
79272968 AATATATTAT
* * *
79272978 TAAAACTAGATCAATGGATTAATTGTCTAAATACTTTTTTTCG
1 TAAAACTAGATCAATAGATTAATCGTCTAAATACATTTTTTCG
*
79273021 TAAAACTAGATCAATAGATTAGTCGTCTAAATACATTTTT
1 TAAAACTAGATCAATAGATTAATCGTCTAAATACATTTTT
79273061 GATAAGTCAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.37, C:0.12, G:0.11, T:0.40
Consensus pattern (43 bp):
TAAAACTAGATCAATAGATTAATCGTCTAAATACATTTTTTCG
Found at i:79273436 original size:18 final size:18
Alignment explanation
Indices: 79273397--79273435 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
79273387 CATAAATTTT
79273397 AAAAGTAAAAACTAAAAA
1 AAAAGTAAAAACTAAAAA
*
79273415 AAAAGT-AAAATTAAAAA
1 AAAAGTAAAAACTAAAAA
79273432 AAAA
1 AAAA
79273436 AAGAAAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.79, C:0.03, G:0.05, T:0.13
Consensus pattern (18 bp):
AAAAGTAAAAACTAAAAA
Found at i:79273530 original size:17 final size:16
Alignment explanation
Indices: 79273510--79273548 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 16
79273500 ACATCCATCC
79273510 TTTTTTTAAAAAAGAAT
1 TTTTTTTAAAAAA-AAT
*
79273527 TTTTCTTAAAAAAAAT
1 TTTTTTTAAAAAAAAT
79273543 TATTTT
1 T-TTTT
79273549 AAATTATATC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
16 4 0.21
17 15 0.79
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.51
Consensus pattern (16 bp):
TTTTTTTAAAAAAAAT
Found at i:79273550 original size:15 final size:16
Alignment explanation
Indices: 79273513--79273551 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
79273503 TCCATCCTTT
*
79273513 TTTTAAAAAAGAATTT
1 TTTTAAAAAAGAATTA
79273529 TTCTTAAAAAA-AATTA
1 TT-TTAAAAAAGAATTA
79273545 TTTTAAA
1 TTTTAAA
79273552 TTATATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 5 0.24
16 8 0.38
17 8 0.38
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.44
Consensus pattern (16 bp):
TTTTAAAAAAGAATTA
Found at i:79277666 original size:15 final size:15
Alignment explanation
Indices: 79277638--79277681 Score: 56
Period size: 14 Copynumber: 3.0 Consensus size: 15
79277628 AAATTGTTAT
*
79277638 TTTTTATAAAATATA
1 TTTTTATAATATATA
79277653 TTTTT-TAACTATAT-
1 TTTTTATAA-TATATA
79277667 TTTTTATAATATATA
1 TTTTTATAATATATA
79277682 AAAATTAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
14 13 0.52
15 12 0.48
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (15 bp):
TTTTTATAATATATA
Found at i:79277670 original size:14 final size:14
Alignment explanation
Indices: 79277635--79277680 Score: 58
Period size: 13 Copynumber: 3.2 Consensus size: 14
79277625 CTGAAATTGT
79277635 TATTTTTTATAAAATA
1 TATTTTTTAT--AATA
*
79277651 TATTTTTTA-ACTA
1 TATTTTTTATAATA
79277664 TATTTTTTATAATA
1 TATTTTTTATAATA
79277678 TAT
1 TAT
79277681 AAAAATTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 12 0.44
14 6 0.22
16 9 0.33
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (14 bp):
TATTTTTTATAATA
Found at i:79292803 original size:6 final size:6
Alignment explanation
Indices: 79292792--79292833 Score: 50
Period size: 6 Copynumber: 6.8 Consensus size: 6
79292782 AAGGCTGGCT
*
79292792 TTGTTC TTGTTC TTGTTC TTGTTGC ATTGTT- ATGTTC TTGTT
1 TTGTTC TTGTTC TTGTTC TTGTT-C -TTGTTC TTGTTC TTGTT
79292834 GTTTTACACT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
5 4 0.13
6 21 0.68
7 1 0.03
8 5 0.16
ACGTcount: A:0.05, C:0.12, G:0.19, T:0.64
Consensus pattern (6 bp):
TTGTTC
Found at i:79293631 original size:16 final size:16
Alignment explanation
Indices: 79293610--79293662 Score: 63
Period size: 16 Copynumber: 3.3 Consensus size: 16
79293600 ATGTTGCGAA
79293610 TCAAATTCGAAAAT-AT
1 TCAAATTCG-AAATCAT
* *
79293626 TCAAATTCTAAATGAT
1 TCAAATTCGAAATCAT
*
79293642 TCGAATTCGAAATCAT
1 TCAAATTCGAAATCAT
79293658 TCAAA
1 TCAAA
79293663 CAAGTGACTT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
15 4 0.13
16 27 0.87
ACGTcount: A:0.45, C:0.15, G:0.08, T:0.32
Consensus pattern (16 bp):
TCAAATTCGAAATCAT
Found at i:79294017 original size:22 final size:22
Alignment explanation
Indices: 79293990--79294036 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
79293980 CCAACTTAAT
*
79293990 TAAAAAATT-TAACAAAATTTTTA
1 TAAAAAATTAT-A-AAAATATTTA
79294013 TAAAAAATTATAAAAATATTTA
1 TAAAAAATTATAAAAATATTTA
79294035 TA
1 TA
79294037 CCTTTTTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 11 0.50
23 10 0.45
24 1 0.05
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (22 bp):
TAAAAAATTATAAAAATATTTA
Found at i:79294656 original size:17 final size:17
Alignment explanation
Indices: 79294636--79294671 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
79294626 TAGCTCATAT
*
79294636 ATATATATTTATTGTAA
1 ATATATATATATTGTAA
79294653 ATATATATATATTGTAA
1 ATATATATATATTGTAA
79294670 AT
1 AT
79294672 TCTAGAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (17 bp):
ATATATATATATTGTAA
Found at i:79296141 original size:22 final size:23
Alignment explanation
Indices: 79296099--79296142 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
79296089 TAATTTAATA
*
79296099 ACTAATAATGTAATTACTGTTATC
1 ACTAATAA-GTAACTACTGTTATC
79296123 ACTAATAA-TAACTACTGTTA
1 ACTAATAAGTAACTACTGTTA
79296143 AAAATACCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 11 0.58
24 8 0.42
ACGTcount: A:0.41, C:0.14, G:0.07, T:0.39
Consensus pattern (23 bp):
ACTAATAAGTAACTACTGTTATC
Found at i:79303526 original size:3 final size:3
Alignment explanation
Indices: 79303518--79303738 Score: 71
Period size: 3 Copynumber: 72.3 Consensus size: 3
79303508 ATTGCTTTGG
* * * * *
79303518 TTA TTA TTA TTA TTT TTA TTA TT- TTG TTA ATA ATA TTA TTA TAA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
79303565 -CA CTA -TA TT- TTA TCTA TTTA TTCA TT- TCA TTA TTAA TCCA TTA
1 TTA TTA TTA TTA TTA T-TA -TTA TT-A TTA TTA TTA TT-A T-TA TTA
* * * * *
79303608 -TA TTA TCA TTA CTA ATA -TA TTC TTA TTA TTT TTA TTAA TGTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A T-TA TTA
* * * * * * *
79303653 TTA TCA GTTGC TCTA CTTT TTA TTG CTA TTA TCA TTA CTA -TA TTTA
1 TTA TTA -TT-A T-TA -TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA
* *
79303699 TTA TTA TTA TTA TTA TTA CTA TTA TTA TTA TTA CTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
79303739 ATAGTAGTGT
Statistics
Matches: 160, Mismatches: 38, Indels: 40
0.67 0.16 0.17
Matches are distributed among these distances:
2 14 0.09
3 122 0.76
4 20 0.12
5 4 0.03
ACGTcount: A:0.31, C:0.09, G:0.02, T:0.58
Consensus pattern (3 bp):
TTA
Found at i:79303736 original size:15 final size:15
Alignment explanation
Indices: 79303679--79303738 Score: 81
Period size: 15 Copynumber: 4.2 Consensus size: 15
79303669 TTTTTATTGC
*
79303679 TATTATCATTACTA-
1 TATTATTATTACTAT
*
79303693 TA-T-TTATTATTAT
1 TATTATTATTACTAT
79303706 TATTATTATTACTAT
1 TATTATTATTACTAT
79303721 TATTATTATTACTAT
1 TATTATTATTACTAT
79303736 TAT
1 TAT
79303739 ATAGTAGTGT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
12 7 0.17
13 3 0.08
14 3 0.08
15 27 0.68
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (15 bp):
TATTATTATTACTAT
Found at i:79304078 original size:3 final size:3
Alignment explanation
Indices: 79304072--79304140 Score: 54
Period size: 3 Copynumber: 24.0 Consensus size: 3
79304062 TTATTTAATG
* * * * * *
79304072 TAT TAT TTT TAT TAC TAT CAA TAC TAT TAT TAT TA- TAT TGT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
79304119 TAC TAT TA- TAT TAT T-T TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT
79304141 CTTTACCTAT
Statistics
Matches: 50, Mismatches: 13, Indels: 6
0.72 0.19 0.09
Matches are distributed among these distances:
2 6 0.12
3 44 0.88
ACGTcount: A:0.32, C:0.06, G:0.01, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:79304125 original size:20 final size:19
Alignment explanation
Indices: 79304096--79304139 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 19
79304086 CTATCAATAC
* *
79304096 TATTATTATTATATTGTTAT
1 TATTACTATTATATTATT-T
79304116 TATTACTATTATATTATTT
1 TATTACTATTATATTATTT
79304135 TATTA
1 TATTA
79304140 TCTTTACCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 6 0.27
20 16 0.73
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (19 bp):
TATTACTATTATATTATTT
Found at i:79312390 original size:24 final size:24
Alignment explanation
Indices: 79312350--79312395 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
79312340 TTGAAAGGGT
* *
79312350 TTTTAAATTTTTATTTTTATAAGG
1 TTTTAAATTATTATTTTAATAAGG
79312374 TTTTAAACTTATT-TTTTAATAA
1 TTTTAAA-TTATTATTTTAATAA
79312396 AAAATTTGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 15 0.79
25 4 0.21
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.61
Consensus pattern (24 bp):
TTTTAAATTATTATTTTAATAAGG
Found at i:79317914 original size:14 final size:14
Alignment explanation
Indices: 79317892--79317928 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
79317882 AGTCAATTTC
79317892 TTTTT-CTTTTTTT
1 TTTTTACTTTTTTT
79317905 TTTTTAC-TTTTTT
1 TTTTTACTTTTTTT
*
79317918 GTTTTACTTTT
1 TTTTTACTTTT
79317929 GTCTTTTTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
13 17 0.81
14 4 0.19
ACGTcount: A:0.05, C:0.08, G:0.03, T:0.84
Consensus pattern (14 bp):
TTTTTACTTTTTTT
Found at i:79318024 original size:13 final size:12
Alignment explanation
Indices: 79317979--79318053 Score: 54
Period size: 12 Copynumber: 6.4 Consensus size: 12
79317969 TAACTTTAAA
79317979 ATTTTGAAATA-T
1 ATTTT-AAATATT
*
79317991 ATTTGAAATATT
1 ATTTTAAATATT
79318003 -TTATT-AATATAT
1 ATT-TTAAATAT-T
79318015 ATTTTAAATATT
1 ATTTTAAATATT
*
79318027 ATTTTTTAA-A--
1 A-TTTTAAATATT
79318037 ATTTTAAATATT
1 ATTTTAAATATT
79318049 ATTTT
1 ATTTT
79318054 TAAAATTTAT
Statistics
Matches: 50, Mismatches: 4, Indels: 18
0.69 0.06 0.25
Matches are distributed among these distances:
9 6 0.12
10 2 0.04
11 12 0.24
12 17 0.34
13 13 0.26
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (12 bp):
ATTTTAAATATT
Found at i:79318028 original size:22 final size:21
Alignment explanation
Indices: 79318009--79318051 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
79317999 TATTTTATTA
79318009 ATATATATTTTAAATATTATT
1 ATATATATTTTAAATATTATT
* * *
79318030 TTTTAAAATTTTAAATATTATT
1 ATAT-ATATTTTAAATATTATT
79318052 TTTAAAATTT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 2 0.11
22 16 0.89
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (21 bp):
ATATATATTTTAAATATTATT
Found at i:79318052 original size:22 final size:21
Alignment explanation
Indices: 79318017--79318094 Score: 97
Period size: 22 Copynumber: 3.7 Consensus size: 21
79318007 TAATATATAT
79318017 TTTAAATATTATTTTTTAAAA
1 TTTAAATATTATTTTTTAAAA
79318038 TTTTAAATATTA-TTTTTAAAA
1 -TTTAAATATTATTTTTTAAAA
* *
79318059 TTT-ATTATTAGTTTTATAATAA
1 TTTAAATATTA-TTTTTTAA-AA
79318081 TTTAAATATTATTT
1 TTTAAATATTATTT
79318095 AATTTGTTTT
Statistics
Matches: 49, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
19 6 0.12
20 3 0.06
21 15 0.31
22 19 0.39
23 6 0.12
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.59
Consensus pattern (21 bp):
TTTAAATATTATTTTTTAAAA
Found at i:79318064 original size:13 final size:13
Alignment explanation
Indices: 79317979--79318057 Score: 50
Period size: 13 Copynumber: 6.7 Consensus size: 13
79317969 TAACTTTAAA
*
79317979 ATTTTGAAATA-T
1 ATTTTTAAATATT
*
79317991 A-TTTGAAATATT
1 ATTTTTAAATATT
*
79318003 -TTATT-AATA-T
1 ATTTTTAAATATT
79318013 ATATTTTAAATATT
1 AT-TTTTAAATATT
*
79318027 ATTTTTTAA-A--
1 ATTTTTAAATATT
79318037 A-TTTTAAATATT
1 ATTTTTAAATATT
79318049 ATTTTTAAA
1 ATTTTTAAA
79318058 ATTTATTATT
Statistics
Matches: 52, Mismatches: 5, Indels: 19
0.68 0.07 0.25
Matches are distributed among these distances:
9 6 0.12
10 3 0.06
11 14 0.27
12 9 0.17
13 17 0.33
14 3 0.06
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.56
Consensus pattern (13 bp):
ATTTTTAAATATT
Found at i:79318128 original size:14 final size:15
Alignment explanation
Indices: 79318103--79318131 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
79318093 TTAATTTGTT
79318103 TTATAATATTTTAAA
1 TTATAATATTTTAAA
79318118 TTATAAT-TTTTAAA
1 TTATAATATTTTAAA
79318132 AATATTCAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
TTATAATATTTTAAA
Found at i:79318402 original size:22 final size:21
Alignment explanation
Indices: 79318349--79318402 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 21
79318339 ATTTTTTGCT
*
79318349 ATTAATTTTAAAAAGTTTAAA
1 ATTAATTTTGAAAAGTTTAAA
* * *
79318370 ATTTATATTTGAAATGTTTTATA
1 ATTAAT-TTTGAAAAG-TTTAAA
79318393 ATTAATTTTG
1 ATTAATTTTG
79318403 TTATTTCTCT
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
21 5 0.19
22 11 0.42
23 10 0.38
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (21 bp):
ATTAATTTTGAAAAGTTTAAA
Found at i:79318444 original size:18 final size:17
Alignment explanation
Indices: 79318416--79318474 Score: 61
Period size: 18 Copynumber: 3.6 Consensus size: 17
79318406 TTTCTCTGAC
*
79318416 ATTT-TTTTATTTTTTT
1 ATTTATTTTATTTATTT
*
79318432 CTTTATCTTTATTTATTT
1 ATTTAT-TTTATTTATTT
79318450 ATTTATTTTA-TTA-TT
1 ATTTATTTTATTTATTT
*
79318465 ATTAATTTTA
1 ATTTATTTTA
79318475 AAAAACTTGA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
15 11 0.30
16 6 0.16
17 5 0.14
18 15 0.41
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.75
Consensus pattern (17 bp):
ATTTATTTTATTTATTT
Found at i:79318536 original size:20 final size:20
Alignment explanation
Indices: 79318511--79318629 Score: 71
Period size: 21 Copynumber: 5.6 Consensus size: 20
79318501 GTTTTATAAT
79318511 ATATATTTTTAAAATTTTAA
1 ATATATTTTTAAAATTTTAA
* *
79318531 ATATATATTTGAAATTATTTT-T
1 ATATAT-TTTTAAA--ATTTTAA
* * *
79318553 CTAAATTTTAAATATTATTTTTAA
1 ATATATTTTTAA-A--A-TTTTAA
*
79318577 ATCAT-TTTTTAAAAATTTAA
1 AT-ATATTTTTAAAATTTTAA
* *
79318597 ATATTATTTTTGAAATATTAA
1 ATA-TATTTTTAAAATTTTAA
79318618 ATATATTTTTAA
1 ATATATTTTTAA
79318630 TAATATAAAA
Statistics
Matches: 76, Mismatches: 14, Indels: 18
0.70 0.13 0.17
Matches are distributed among these distances:
19 1 0.01
20 22 0.29
21 27 0.36
22 8 0.11
23 10 0.13
24 7 0.09
25 1 0.01
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.55
Consensus pattern (20 bp):
ATATATTTTTAAAATTTTAA
Found at i:79318550 original size:23 final size:22
Alignment explanation
Indices: 79318484--79318551 Score: 75
Period size: 23 Copynumber: 3.0 Consensus size: 22
79318474 AAAAAACTTG
* *
79318484 AAATGTATATTTGAAATGTTTT
1 AAATATATATTTGAAATATTTT
*
79318506 ATAATATATATTTTTAAA-ATTTT
1 A-AATATATA-TTTGAAATATTTT
79318529 AAATATATATTTGAAATTATTTT
1 AAATATATATTTGAAA-TATTTT
79318552 TCTAAATTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
21 6 0.16
22 9 0.24
23 17 0.45
24 6 0.16
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (22 bp):
AAATATATATTTGAAATATTTT
Found at i:79318593 original size:34 final size:33
Alignment explanation
Indices: 79318516--79318612 Score: 126
Period size: 33 Copynumber: 2.9 Consensus size: 33
79318506 ATAATATATA
* *
79318516 TTTTTAAAATTTTAAATA-TATATTTGAAATTAT
1 TTTTTAAAATTTTAAATATTAT-TTTTAAATCAT
79318549 TTTTCT-AAATTTTAAATATTATTTTTAAATCAT
1 TTTT-TAAAATTTTAAATATTATTTTTAAATCAT
*
79318582 TTTTTAAAAATTTAAATATTATTTTTGAAAT
1 TTTTTAAAATTTTAAATATTATTTTT-AAAT
79318613 ATTAAATATA
Statistics
Matches: 57, Mismatches: 3, Indels: 7
0.85 0.04 0.10
Matches are distributed among these distances:
32 1 0.02
33 48 0.84
34 8 0.14
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (33 bp):
TTTTTAAAATTTTAAATATTATTTTTAAATCAT
Found at i:79318638 original size:20 final size:20
Alignment explanation
Indices: 79318574--79318638 Score: 62
Period size: 20 Copynumber: 3.2 Consensus size: 20
79318564 ATATTATTTT
* *
79318574 TAAATCATT-TTTTAAAAATT
1 TAAAT-ATTATTTTTAAAATA
*
79318594 TAAATATTATTTTTGAAATA
1 TAAATATTATTTTTAAAATA
79318614 TTAAATA-TATTTTTAATAATA
1 -TAAATATTATTTTTAA-AATA
79318635 TAAA
1 TAAA
79318639 ACATTAAAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
19 3 0.08
20 25 0.66
21 10 0.26
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.49
Consensus pattern (20 bp):
TAAATATTATTTTTAAAATA
Found at i:79318821 original size:13 final size:13
Alignment explanation
Indices: 79318805--79318841 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
79318795 TTTTTTTATA
79318805 ATATTTTAAATTT
1 ATATTTTAAATTT
79318818 ATATTTTAAA--T
1 ATATTTTAAATTT
*
79318829 ATTTTTTAAATTT
1 ATATTTTAAATTT
79318842 TAAATATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
11 10 0.48
13 11 0.52
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
ATATTTTAAATTT
Found at i:79318845 original size:31 final size:29
Alignment explanation
Indices: 79318797--79318886 Score: 85
Period size: 31 Copynumber: 3.0 Consensus size: 29
79318787 ATTTATTATT
79318797 TTTTTATAATATTTTAAATTTATATTTTAAATA
1 TTTTT-TAA-ATTTTAAATTTA-ATTTTAAA-A
*
79318830 TTTTTTAAATTTTAAATATAATTTTTATAAA
1 TTTTTTAAATTTTAAATTTAA-TTTTA-AAA
* *
79318861 -TTATT-AATTTTAAAATTAATTTTAAA
1 TTTTTTAAATTTTAAATTTAATTTTAAA
79318887 GATATTCAAA
Statistics
Matches: 51, Mismatches: 4, Indels: 10
0.78 0.06 0.15
Matches are distributed among these distances:
27 2 0.04
28 5 0.10
29 12 0.24
30 5 0.10
31 17 0.33
32 5 0.10
33 5 0.10
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (29 bp):
TTTTTTAAATTTTAAATTTAATTTTAAAA
Found at i:79318854 original size:12 final size:13
Alignment explanation
Indices: 79318807--79318886 Score: 50
Period size: 12 Copynumber: 6.6 Consensus size: 13
79318797 TTTTTATAAT
79318807 ATTTTAAAT-TTA
1 ATTTTAAATATTA
79318819 TATTTTAAATATT-
1 -ATTTTAAATATTA
*
79318832 -TTTTAAATTTTA
1 ATTTTAAATATTA
* *
79318844 AATAT-AAT-TT-
1 ATTTTAAATATTA
*
79318854 -TTATAAATTATTA
1 ATTTTAAA-TATTA
79318867 ATTTTAAA-ATTA
1 ATTTTAAATATTA
79318879 ATTTTAAA
1 ATTTTAAA
79318887 GATATTCAAA
Statistics
Matches: 54, Mismatches: 5, Indels: 17
0.71 0.07 0.22
Matches are distributed among these distances:
9 3 0.06
10 2 0.04
11 13 0.24
12 17 0.31
13 11 0.20
14 8 0.15
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
ATTTTAAATATTA
Found at i:79318861 original size:114 final size:114
Alignment explanation
Indices: 79318650--79318865 Score: 296
Period size: 114 Copynumber: 1.9 Consensus size: 114
79318640 CATTAAAATA
* * *
79318650 TTTTAAATATATGACTTTTCATATTTATTATTAGTTTTATAATATTTTAAATGTATATTTTAATT
1 TTTTAAAGATATGACATTTCAAATTTATTATTAGTTTTATAATATTTTAAATGTATATTTTAATT
**
79318715 TGTTTTATAATTTTTTAATAATGATTTTTAAATTATTTAAAATATATTAT
66 TGTTTTATAATTTTAAAATAAT-ATTTTTAAATTATTTAAAATATATTAT
* *
79318765 TTTTAAAGATATGACATTTCAAATTTATTATT-TTTTTATAATATTTTAAATTTATATTTTAAAT
1 TTTTAAAGATATGACATTTCAAATTTATTATTAGTTTTATAATATTTTAAATGTATATTTT-AAT
79318829 ATT-TTTTA-AATTTTAAATATAAT-TTTTATAAATTATT
65 -TTGTTTTATAATTTTAAA-ATAATATTTT-TAAATTATT
79318866 AATTTTAAAA
Statistics
Matches: 90, Mismatches: 7, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
113 4 0.04
114 42 0.47
115 42 0.47
116 2 0.02
ACGTcount: A:0.37, C:0.02, G:0.03, T:0.58
Consensus pattern (114 bp):
TTTTAAAGATATGACATTTCAAATTTATTATTAGTTTTATAATATTTTAAATGTATATTTTAATT
TGTTTTATAATTTTAAAATAATATTTTTAAATTATTTAAAATATATTAT
Found at i:79319379 original size:14 final size:15
Alignment explanation
Indices: 79319360--79319388 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
79319350 TTTGAATATC
79319360 TTTAAAA-ATTATAA
1 TTTAAAATATTATAA
79319374 TTTAAAATATTATAA
1 TTTAAAATATTATAA
79319389 AACAAATTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TTTAAAATATTATAA
Found at i:79319474 original size:22 final size:22
Alignment explanation
Indices: 79319397--79319487 Score: 73
Period size: 22 Copynumber: 4.1 Consensus size: 22
79319387 AAAACAAATT
*
79319397 AAATAATATTTAAATTATTATAA
1 AAATAATATTTAAA-TATTAAAA
* *
79319420 AACTAATA-ATAAAT-TTGAAAA
1 AAATAATATTTAAATATT-AAAA
*
79319441 TTTAA-AATATTTAAATATTAAAA
1 --AAATAATATTTAAATATTAAAA
*
79319464 AAATAATATTTAAA-ATTTAAA
1 AAATAATATTTAAATATTAAAA
79319485 AAA
1 AAA
79319488 GTAAATTCAA
Statistics
Matches: 54, Mismatches: 8, Indels: 14
0.71 0.11 0.18
Matches are distributed among these distances:
20 2 0.04
21 15 0.28
22 18 0.33
23 17 0.31
24 2 0.04
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.37
Consensus pattern (22 bp):
AAATAATATTTAAATATTAAAA
Found at i:79321560 original size:17 final size:18
Alignment explanation
Indices: 79321519--79321553 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
79321509 TTATTATTAA
*
79321519 ATATATTTTAATTAAAAT
1 ATATAATTTAATTAAAAT
79321537 ATATAATTTAA-TAAAAT
1 ATATAATTTAATTAAAAT
79321554 TTTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
ATATAATTTAATTAAAAT
Found at i:79321715 original size:120 final size:120
Alignment explanation
Indices: 79321502--79322004 Score: 961
Period size: 120 Copynumber: 4.2 Consensus size: 120
79321492 ATGATTTTTA
* *
79321502 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTTTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAA
* *
79321567 TATTCTTATATTAATTTACTGAAATCATAATATATGATATTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
79321622 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAA
79321687 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
79321742 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAA
*
79321807 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
79321862 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAA
79321927 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
79321982 AACATAATTATTATTAAATATAT
1 AACATAATTATTATTAAATATAT
79322005 AACTTGAAAA
Statistics
Matches: 377, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 377 1.00
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.45
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAA
TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:79322355 original size:18 final size:18
Alignment explanation
Indices: 79322332--79322391 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 18
79322322 TTAAAACAAG
79322332 TTACATTCTATATTAGAA
1 TTACATTCTATATTAGAA
*** * *
79322350 TTACATAAGAAAATT-G-T
1 TTACAT-TCTATATTAGAA
79322367 TTACATTCTATATTAGAA
1 TTACATTCTATATTAGAA
79322385 TTACATT
1 TTACATT
79322392 AGAATTACAT
Statistics
Matches: 29, Mismatches: 10, Indels: 6
0.64 0.22 0.13
Matches are distributed among these distances:
16 4 0.14
17 7 0.24
18 14 0.48
19 4 0.14
ACGTcount: A:0.40, C:0.10, G:0.07, T:0.43
Consensus pattern (18 bp):
TTACATTCTATATTAGAA
Found at i:79325838 original size:24 final size:23
Alignment explanation
Indices: 79325806--79325884 Score: 74
Period size: 24 Copynumber: 3.4 Consensus size: 23
79325796 TTTTACGTTA
79325806 TAATATTATTACAGTATCAATAAT
1 TAATATTATTA-AGTATCAATAAT
* **
79325830 TAATATTA-TAAATAT-TGT-AT
1 TAATATTATTAAGTATCAATAAT
79325850 TAAAATATTATTATAGTATCAATAAT
1 T--AATATTATTA-AGTATCAATAAT
79325876 TAATATTAT
1 TAATATTAT
79325885 AAATATTGTA
Statistics
Matches: 43, Mismatches: 6, Indels: 12
0.70 0.10 0.20
Matches are distributed among these distances:
20 3 0.07
21 1 0.02
22 11 0.26
23 4 0.09
24 20 0.47
25 1 0.02
26 3 0.07
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.46
Consensus pattern (23 bp):
TAATATTATTAAGTATCAATAAT
Found at i:79325857 original size:13 final size:14
Alignment explanation
Indices: 79325833--79325897 Score: 51
Period size: 14 Copynumber: 4.4 Consensus size: 14
79325823 CAATAATTAA
79325833 TATTATAAATATTG
1 TATTATAAATATTG
*
79325847 TATTA-AAATATTAT
1 TATTATAAATATT-G
* *
79325861 TATAGTATCAATAATTAA
1 TAT--TATAAAT-ATT-G
79325879 TATTATAAATATTG
1 TATTATAAATATTG
79325893 TATTA
1 TATTA
79325898 AATGGTTCAC
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
13 7 0.17
14 13 0.32
15 3 0.07
16 8 0.20
17 3 0.07
18 7 0.17
ACGTcount: A:0.46, C:0.02, G:0.05, T:0.48
Consensus pattern (14 bp):
TATTATAAATATTG
Found at i:79325857 original size:46 final size:46
Alignment explanation
Indices: 79325807--79325899 Score: 177
Period size: 46 Copynumber: 2.0 Consensus size: 46
79325797 TTTACGTTAT
79325807 AATATTATTACAGTATCAATAATTAATATTATAAATATTGTATTAA
1 AATATTATTACAGTATCAATAATTAATATTATAAATATTGTATTAA
*
79325853 AATATTATTATAGTATCAATAATTAATATTATAAATATTGTATTAA
1 AATATTATTACAGTATCAATAATTAATATTATAAATATTGTATTAA
79325899 A
1 A
79325900 TGGTTCACTC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.48, C:0.03, G:0.04, T:0.44
Consensus pattern (46 bp):
AATATTATTACAGTATCAATAATTAATATTATAAATATTGTATTAA
Found at i:79325882 original size:21 final size:21
Alignment explanation
Indices: 79325812--79325885 Score: 58
Period size: 21 Copynumber: 3.3 Consensus size: 21
79325802 GTTATAATAT
*
79325812 TATTACAGTATCAATAATTAA
1 TATTATAGTATCAATAATTAA
* * * * *
79325833 TATTATAAATATTGTATTAAAATAT
1 TATTAT-AGTA-T-CAAT-AATTAA
79325858 TATTATAGTATCAATAATTAA
1 TATTATAGTATCAATAATTAA
79325879 TATTATA
1 TATTATA
79325886 AATATTGTAT
Statistics
Matches: 38, Mismatches: 11, Indels: 8
0.67 0.19 0.14
Matches are distributed among these distances:
21 16 0.42
22 5 0.13
23 2 0.05
24 5 0.13
25 10 0.26
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (21 bp):
TATTATAGTATCAATAATTAA
Found at i:79329942 original size:3 final size:3
Alignment explanation
Indices: 79329934--79329968 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
79329924 TCCTCCCCAC
79329934 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
79329969 CCGATACAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:79335028 original size:20 final size:21
Alignment explanation
Indices: 79334995--79335037 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 21
79334985 TTTTAATTAA
79334995 TTTCTAATAATTTTATGATTTT
1 TTTCTAAT-ATTTTATGATTTT
*
79335017 TTTCTAAT-TTTTATGGTTTT
1 TTTCTAATATTTTATGATTTT
79335037 T
1 T
79335038 AAATATTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 12 0.60
22 8 0.40
ACGTcount: A:0.21, C:0.05, G:0.07, T:0.67
Consensus pattern (21 bp):
TTTCTAATATTTTATGATTTT
Found at i:79335086 original size:41 final size:41
Alignment explanation
Indices: 79335025--79335143 Score: 118
Period size: 41 Copynumber: 2.9 Consensus size: 41
79335015 TTTTTCTAAT
*
79335025 TTTTATGGTTTTTAA-ATATTTTTATAAATTTTTTAAAAAA
1 TTTTATGGTTTTTAATTTATTTTTATAAATTTTTTAAAAAA
* * * *
79335065 TTTTATGGCTTTTAATTTATTTTTCT-AATTATTTTTATAAA
1 TTTTATGGTTTTTAATTTATTTTTATAAATT-TTTTAAAAAA
* *
79335106 TTTTAATGATTTTTATATATT-TTTTTATAAATTCTTTA
1 TTTT-ATGGTTTTTA-AT-TTATTTTTATAAATTTTTTA
79335144 TGTTTTTTTA
Statistics
Matches: 63, Mismatches: 10, Indels: 9
0.77 0.12 0.11
Matches are distributed among these distances:
40 18 0.29
41 20 0.32
42 8 0.13
43 11 0.17
44 6 0.10
ACGTcount: A:0.31, C:0.03, G:0.04, T:0.62
Consensus pattern (41 bp):
TTTTATGGTTTTTAATTTATTTTTATAAATTTTTTAAAAAA
Found at i:79335117 original size:19 final size:19
Alignment explanation
Indices: 79335090--79335128 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
79335080 TTTATTTTTC
*
79335090 TAATTATTTTTATAAATTT
1 TAATGATTTTTATAAATTT
*
79335109 TAATGATTTTTATATATTT
1 TAATGATTTTTATAAATTT
79335128 T
1 T
79335129 TTTATAAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (19 bp):
TAATGATTTTTATAAATTT
Found at i:79335118 original size:31 final size:30
Alignment explanation
Indices: 79335074--79335155 Score: 85
Period size: 31 Copynumber: 2.6 Consensus size: 30
79335064 ATTTTATGGC
* *
79335074 TTTTAATTTATTTTTCTAATTATTTTTATAAA
1 TTTTAA-TGATTTTTATAATT-TTTTTATAAA
79335106 TTTTAATGATTTTTATATATTTTTTTATAAA
1 TTTTAATGATTTTTATA-ATTTTTTTATAAA
* *
79335137 TTCTTTATG-TTTTTTTAAT
1 TT-TTAATGATTTTTATAAT
79335156 AATTCTAGAA
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
30 2 0.05
31 28 0.64
32 14 0.32
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.67
Consensus pattern (30 bp):
TTTTAATGATTTTTATAATTTTTTTATAAA
Found at i:79335981 original size:20 final size:21
Alignment explanation
Indices: 79335949--79335987 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
79335939 TTTGGTGAGA
79335949 GAGTCCAAACTTTT-TGCTTT
1 GAGTCCAAACTTTTGTGCTTT
79335969 GAGT-CAAAGCTTTTGTGCT
1 GAGTCCAAA-CTTTTGTGCT
79335988 AACAAACATT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 4 0.24
20 9 0.53
21 4 0.24
ACGTcount: A:0.21, C:0.18, G:0.21, T:0.41
Consensus pattern (21 bp):
GAGTCCAAACTTTTGTGCTTT
Found at i:79338048 original size:21 final size:19
Alignment explanation
Indices: 79338006--79338059 Score: 63
Period size: 21 Copynumber: 2.7 Consensus size: 19
79337996 CTTTAATGCA
79338006 TTTAAAAAAATTATTATAT
1 TTTAAAAAAATTATTATAT
* *
79338025 TTTAAAATAAAGTTTTTATTT
1 TTTAAAA-AAA-TTATTATAT
*
79338046 TTTAAAAAGATTAT
1 TTTAAAAAAATTAT
79338060 AAAATATCAC
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
19 10 0.34
20 5 0.17
21 14 0.48
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (19 bp):
TTTAAAAAAATTATTATAT
Found at i:79349980 original size:41 final size:41
Alignment explanation
Indices: 79349916--79349998 Score: 123
Period size: 41 Copynumber: 2.0 Consensus size: 41
79349906 AATCTTTGAA
*
79349916 TGGAATTTAGTTGTTGTAAATTTATTTTTAAGAATTTAATC
1 TGGAAATTAGTTGTTGTAAATTTATTTTTAAGAATTTAATC
* *
79349957 TGGAAATTAGTT-TATGTAGATTTATTTTTAAGAATTTGATC
1 TGGAAATTAGTTGT-TGTAAATTTATTTTTAAGAATTTAATC
79349998 T
1 T
79349999 TTTTATTTCT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
40 1 0.03
41 37 0.97
ACGTcount: A:0.31, C:0.02, G:0.16, T:0.51
Consensus pattern (41 bp):
TGGAAATTAGTTGTTGTAAATTTATTTTTAAGAATTTAATC
Found at i:79355407 original size:25 final size:25
Alignment explanation
Indices: 79355373--79355423 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
79355363 AACTTGACAC
79355373 TTGTTCTCATATTAACCCCAAAGGT
1 TTGTTCTCATATTAACCCCAAAGGT
79355398 TTGTTCTCATATTAACCCCAAAGGT
1 TTGTTCTCATATTAACCCCAAAGGT
79355423 T
1 T
79355424 ATTTAACCCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.27, C:0.24, G:0.12, T:0.37
Consensus pattern (25 bp):
TTGTTCTCATATTAACCCCAAAGGT
Found at i:79364266 original size:4 final size:4
Alignment explanation
Indices: 79364257--79364300 Score: 88
Period size: 4 Copynumber: 11.0 Consensus size: 4
79364247 TTATTATTTT
79364257 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
79364301 ACTAGTTGTA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 40 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
CATA
Found at i:79368934 original size:14 final size:15
Alignment explanation
Indices: 79368908--79368946 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
79368898 GTAAGTTATG
79368908 AATTTAATATTTAAT
1 AATTTAATATTTAAT
* *
79368923 ATTTTAAT-TTTATT
1 AATTTAATATTTAAT
79368937 AATTTAATAT
1 AATTTAATAT
79368947 ATATTTTTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
14 12 0.60
15 8 0.40
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
AATTTAATATTTAAT
Found at i:79368951 original size:15 final size:15
Alignment explanation
Indices: 79368903--79368951 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
79368893 CATGTGTAAG
*
79368903 TTATGAATTTAATAT
1 TTATTAATTTAATAT
* *
79368918 TTAATATTTTAAT-T
1 TTATTAATTTAATAT
79368932 TTATTAATTTAATAT
1 TTATTAATTTAATAT
*
79368947 ATATT
1 TTATT
79368952 TTTAAAAATT
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
14 12 0.44
15 15 0.56
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (15 bp):
TTATTAATTTAATAT
Found at i:79368954 original size:21 final size:22
Alignment explanation
Indices: 79368916--79368965 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
79368906 TGAATTTAAT
* **
79368916 ATTTAATATTTTAATTTTATTA
1 ATTTAATATTATAATTTTAAAA
*
79368938 ATTTAATA-TATATTTTTAAAA
1 ATTTAATATTATAATTTTAAAA
79368959 ATTTAAT
1 ATTTAAT
79368966 CTTGTTAGAC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 16 0.67
22 8 0.33
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (22 bp):
ATTTAATATTATAATTTTAAAA
Found at i:79369163 original size:15 final size:16
Alignment explanation
Indices: 79369138--79369181 Score: 63
Period size: 15 Copynumber: 2.8 Consensus size: 16
79369128 AATCAAGAAT
*
79369138 AAAATTTTAAATTTTA
1 AAAATATTAAATTTTA
*
79369154 AAAATA-TAAATATTA
1 AAAATATTAAATTTTA
79369169 AAAATATTAAATT
1 AAAATATTAAATT
79369182 AAGTTTAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 14 0.58
16 10 0.42
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
AAAATATTAAATTTTA
Found at i:79377450 original size:27 final size:28
Alignment explanation
Indices: 79377338--79377463 Score: 191
Period size: 28 Copynumber: 4.5 Consensus size: 28
79377328 CATGAGATTG
* * * *
79377338 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
79377367 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
79377395 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
79377423 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
79377450 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
79377464 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
27 24 0.26
28 50 0.54
29 18 0.20
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:79377460 original size:55 final size:57
Alignment explanation
Indices: 79377338--79377463 Score: 193
Period size: 55 Copynumber: 2.2 Consensus size: 57
79377328 CATGAGATTG
* *
79377338 GCACTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTTGATTATATA
* *
79377395 GCACTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTTGATTATATA
*
79377450 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
79377464 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
55 24 0.38
56 22 0.34
57 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTTGATTATATA
Found at i:79377474 original size:27 final size:27
Alignment explanation
Indices: 79377366--79377476 Score: 143
Period size: 28 Copynumber: 4.0 Consensus size: 27
79377356 TAAATTGTAC
*
79377366 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGATTATAT
*
79377394 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGATTATAT
*
79377422 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGATTATAT
* *
79377449 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGATTATAT
79377476 A
1 A
79377477 CTTTTGAATC
Statistics
Matches: 78, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
27 30 0.38
28 48 0.62
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGATTATAT
Found at i:79383022 original size:18 final size:20
Alignment explanation
Indices: 79382995--79383036 Score: 52
Period size: 18 Copynumber: 2.1 Consensus size: 20
79382985 TAAATATTAA
79382995 AAAATGTCAT-TTATTT-TT
1 AAAATGTCATATTATTTATT
*
79383013 AAAATTTCATAATTATTTATT
1 AAAATGTCAT-ATTATTTATT
79383034 AAA
1 AAA
79383037 TTAAAAATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 9 0.45
20 6 0.30
21 5 0.25
ACGTcount: A:0.43, C:0.05, G:0.02, T:0.50
Consensus pattern (20 bp):
AAAATGTCATATTATTTATT
Found at i:79388618 original size:19 final size:22
Alignment explanation
Indices: 79388596--79388640 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
79388586 AATATTTACA
79388596 TATTTTA-TTA-ATTT-AGTAT
1 TATTTTAGTTAGATTTGAGTAT
*
79388615 TATTTTAGTTAGATTTGATTAT
1 TATTTTAGTTAGATTTGAGTAT
79388637 TATT
1 TATT
79388641 AACTTTTCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 7 0.32
20 3 0.14
21 4 0.18
22 8 0.36
ACGTcount: A:0.29, C:0.00, G:0.09, T:0.62
Consensus pattern (22 bp):
TATTTTAGTTAGATTTGAGTAT
Found at i:79388779 original size:15 final size:15
Alignment explanation
Indices: 79388754--79388790 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
79388744 TTTAGGATAG
*
79388754 TAGGCTATTGGGCTT
1 TAGGTTATTGGGCTT
*
79388769 TGGGTTATTGGGCTT
1 TAGGTTATTGGGCTT
79388784 TAGGTTA
1 TAGGTTA
79388791 GTATATGGGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.14, C:0.08, G:0.35, T:0.43
Consensus pattern (15 bp):
TAGGTTATTGGGCTT
Found at i:79389700 original size:8 final size:9
Alignment explanation
Indices: 79389679--79389711 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
79389669 TTAAATGATT
79389679 TTTAAAATA
1 TTTAAAATA
79389688 TTTAAAA-A
1 TTTAAAATA
79389696 TTTAAAATA
1 TTTAAAATA
*
79389705 TTCAAAA
1 TTTAAAA
79389712 AAATAAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
8 8 0.36
9 14 0.64
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (9 bp):
TTTAAAATA
Found at i:79389701 original size:17 final size:17
Alignment explanation
Indices: 79389679--79389712 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
79389669 TTAAATGATT
*
79389679 TTTAAAATATTTAAAAA
1 TTTAAAATATTCAAAAA
79389696 TTTAAAATATTCAAAAA
1 TTTAAAATATTCAAAAA
79389713 AATAAAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (17 bp):
TTTAAAATATTCAAAAA
Found at i:79389718 original size:17 final size:17
Alignment explanation
Indices: 79389681--79389719 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
79389671 AAATGATTTT
* **
79389681 TAAAATATTTAAAAATT
1 TAAAATATTCAAAAAAA
79389698 TAAAATATTCAAAAAAA
1 TAAAATATTCAAAAAAA
79389715 TAAAA
1 TAAAA
79389720 AAAATCATAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (17 bp):
TAAAATATTCAAAAAAA
Found at i:79393900 original size:16 final size:17
Alignment explanation
Indices: 79393865--79393908 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 17
79393855 CTCGATTTGA
79393865 AAACTC-AAATG-GTTC
1 AAACTCAAAATGAGTTC
79393880 AAACTCAAAATGAGTTC
1 AAACTCAAAATGAGTTC
*
79393897 -AACTTAAAATGA
1 AAACTCAAAATGA
79393909 TCCTAAACTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 6 0.23
16 16 0.62
17 4 0.15
ACGTcount: A:0.48, C:0.16, G:0.11, T:0.25
Consensus pattern (17 bp):
AAACTCAAAATGAGTTC
Found at i:79397746 original size:186 final size:186
Alignment explanation
Indices: 79397414--79397780 Score: 524
Period size: 186 Copynumber: 2.0 Consensus size: 186
79397404 TTACTTTATA
* * *
79397414 ACTATTTTTTCTTTTTTTAATGGAATTATGTTTATAATTAAATTGTTATAATAAAGGTCGATAAT
1 ACTATTTTTTCTTTTTTTAATGGAATTATGTTTATAACTAAATTGTTATAATAAACGTCAATAAT
* * * *
79397479 GATGGTAGAACGATTGCAAAGCAATAAAAAAAGAAAAATAAGAGCACACAAATTTTACGTGAAAA
66 GACGGTAGAACGATCGCAAAGCAATAAAAAAAGAAAAATAAAAACACACAAATTTTACGTGAAAA
* *
79397544 TTCTTTCGGGAAAAAACTACAAGCAAAGGAGAAGAAATTCACTAATGTTGATAATG
131 TCCTTTCGGAAAAAAACTACAAGCAAAGGAGAAGAAATTCACTAATGTTGATAATG
79397600 ACTATTTTTTCTTTTTTTAATGGAATTATGTTTATAACTAAATTGTTATAATAAACGTCAATAAT
1 ACTATTTTTTCTTTTTTTAATGGAATTATGTTTATAACTAAATTGTTATAATAAACGTCAATAAT
* * * *
79397665 GACGGTAGAACGATCGTAAAGTAA-AAAATAAA-AATAAA-AAAAACACACAAATTTTATGTGGA
66 GACGGTAGAACGATCGCAAAGCAATAAAA-AAAGAA-AAATAAAAACACACAAATTTTACGTGAA
** ** *
79397727 AATCCTTTCGAGAAAAAAACTATGAGCAGGGGAGAAGAAATTTACTAATGTTGA
129 AATCCTTTCG-GAAAAAAACTACAAGCAAAGGAGAAGAAATTCACTAATGTTGA
79397781 AAACTGAAAG
Statistics
Matches: 160, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
185 35 0.22
186 125 0.78
ACGTcount: A:0.44, C:0.09, G:0.16, T:0.31
Consensus pattern (186 bp):
ACTATTTTTTCTTTTTTTAATGGAATTATGTTTATAACTAAATTGTTATAATAAACGTCAATAAT
GACGGTAGAACGATCGCAAAGCAATAAAAAAAGAAAAATAAAAACACACAAATTTTACGTGAAAA
TCCTTTCGGAAAAAAACTACAAGCAAAGGAGAAGAAATTCACTAATGTTGATAATG
Found at i:79404462 original size:31 final size:31
Alignment explanation
Indices: 79404427--79404489 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 31
79404417 AACCCAATGG
*
79404427 CTTAAAT-AAAAATTTCTGAATAGTTTAGTGA
1 CTTAAATGAAAAATTTC-GAATAGTTAAGTGA
* *
79404458 CTTAAATGTAAACTTTCGAATAGTTAAGTGA
1 CTTAAATGAAAAATTTCGAATAGTTAAGTGA
79404489 C
1 C
79404490 CAAAACAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 21 0.75
32 7 0.25
ACGTcount: A:0.40, C:0.10, G:0.14, T:0.37
Consensus pattern (31 bp):
CTTAAATGAAAAATTTCGAATAGTTAAGTGA
Found at i:79406999 original size:6 final size:6
Alignment explanation
Indices: 79406988--79407012 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
79406978 GTTTTTATAA
79406988 TTAAAT TTAAAT TTAAAT TTAAAT T
1 TTAAAT TTAAAT TTAAAT TTAAAT T
79407013 ATTTAAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (6 bp):
TTAAAT
Found at i:79416799 original size:83 final size:82
Alignment explanation
Indices: 79416622--79416802 Score: 190
Period size: 83 Copynumber: 2.2 Consensus size: 82
79416612 CTTAAAATGG
* * *
79416622 TAAAATTTTAATTTAAGTATTTTATAATTTATAAAATTTTAAATTAGTAATAATAAAATTACATT
1 TAAAAATTTAATTTAAGTATTTTAAAATTTATAAAATTATAAATTAGTAATAATAAAATTACATT
*
79416687 TTGATCGTTCAAAAATAA
66 TTGATCATTCAAAAAT-A
*
79416705 TAAAAATTTAATTTAA-TCA-TTTAAAATTTAT-AAATATATAAATTATTAAAATAATAAAATTA
1 TAAAAATTTAATTTAAGT-ATTTTAAAATTTATAAAAT-TATAAATTAGT--AATAATAAAATTA
* * *
79416767 TATTTTTATTATTACAAAAAT-
62 CATTTTGATCATT-CAAAAATA
* *
79416788 TTACAATTTAATTTA
1 TAAAAATTTAATTTA
79416803 CGGTCCCCAA
Statistics
Matches: 83, Mismatches: 10, Indels: 10
0.81 0.10 0.10
Matches are distributed among these distances:
81 4 0.05
82 21 0.25
83 29 0.35
84 22 0.27
85 7 0.08
ACGTcount: A:0.49, C:0.03, G:0.02, T:0.45
Consensus pattern (82 bp):
TAAAAATTTAATTTAAGTATTTTAAAATTTATAAAATTATAAATTAGTAATAATAAAATTACATT
TTGATCATTCAAAAATA
Found at i:79421643 original size:18 final size:17
Alignment explanation
Indices: 79421600--79421641 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
79421590 TATAATCGTG
*
79421600 TTTTAAATTTAATTAAA
1 TTTTAAATATAATTAAA
*
79421617 TTTTGAAATATAATTAAT
1 TTTT-AAATATAATTAAA
79421635 TTTTAAA
1 TTTTAAA
79421642 ATTTATCCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 7 0.32
18 15 0.68
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (17 bp):
TTTTAAATATAATTAAA
Found at i:79427469 original size:37 final size:37
Alignment explanation
Indices: 79427428--79427565 Score: 231
Period size: 37 Copynumber: 3.7 Consensus size: 37
79427418 TTTGAGTACT
79427428 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
*
79427465 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
*
79427502 TCTGATCAAGAGACAAAGTGATAAGTGGCTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
** *
79427539 TCTGATCAAGTGATAAAGTGATAAGTG
1 TCTGATCAAGAAACAAAGTGATAAGTG
79427566 TAGCTTCAGC
Statistics
Matches: 96, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 96 1.00
ACGTcount: A:0.39, C:0.14, G:0.21, T:0.26
Consensus pattern (37 bp):
TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
Found at i:79427518 original size:74 final size:77
Alignment explanation
Indices: 79427428--79427611 Score: 248
Period size: 74 Copynumber: 2.4 Consensus size: 77
79427418 TTTGAGTACT
*
79427428 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG-
1 TCTGATCAAGAGACAAAGTGATAAGTGGCTACACTTATCTGATCAAGAAACAAAGTGATAAGTGA
79427492 G-T-TACACTTA
66 GCTCTACACTTA
** *
79427502 TCTGATCAAGAGACAAAGTGATAAGTGGCTACACTTATCTGATCAAGTGATAAAGTGATAAGTGT
1 TCTGATCAAGAGACAAAGTGATAAGTGGCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG-
79427567 AGCTTCAGCTACACTTA
65 AGC-T---CTACACTTA
* *
79427584 TCTGATCAAGTGGCAAAGTGATAAGTGG
1 TCTGATCAAGAGACAAAGTGATAAGTGG
79427612 TAGCCTAGCT
Statistics
Matches: 96, Mismatches: 6, Indels: 8
0.87 0.05 0.07
Matches are distributed among these distances:
74 60 0.62
76 1 0.01
78 1 0.01
82 34 0.35
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.27
Consensus pattern (77 bp):
TCTGATCAAGAGACAAAGTGATAAGTGGCTACACTTATCTGATCAAGAAACAAAGTGATAAGTGA
GCTCTACACTTA
Found at i:79427645 original size:51 final size:45
Alignment explanation
Indices: 79427529--79427651 Score: 180
Period size: 45 Copynumber: 2.8 Consensus size: 45
79427519 GTGATAAGTG
** *
79427529 GCTACACTTATCTGATCAAGTGATAAAGTGATAAGTGTAGCTTCA
1 GCTACACTTATCTGATCAAGTGGCAAAGTGATAAGTGTAGCCTCA
79427574 GCTACACTTATCTGATCAAGTGGCAAAGTGATAAGTGGTAGCCT-A
1 GCTACACTTATCTGATCAAGTGGCAAAGTGATAAGT-GTAGCCTCA
*
79427619 GCTACACTTATCTGATCAAG-GAC-AAGTGATAAG
1 GCTACACTTATCTGATCAAGTGGCAAAGTGATAAG
79427652 AGGTCATATG
Statistics
Matches: 73, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
43 10 0.14
44 2 0.03
45 55 0.75
46 6 0.08
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (45 bp):
GCTACACTTATCTGATCAAGTGGCAAAGTGATAAGTGTAGCCTCA
Found at i:79441473 original size:13 final size:12
Alignment explanation
Indices: 79441443--79441493 Score: 50
Period size: 12 Copynumber: 4.1 Consensus size: 12
79441433 CAAAATTTTT
* *
79441443 AAAATTAATAAT
1 AAAATAAATAAA
79441455 AAAATAAATAAA
1 AAAATAAATAAA
79441467 CAAAATAAAATAAGA
1 -AAAAT-AAATAA-A
79441482 AAAA-AAATAAA
1 AAAATAAATAAA
79441493 A
1 A
79441494 TTTCAAAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
11 2 0.06
12 16 0.47
13 5 0.15
14 10 0.29
15 1 0.03
ACGTcount: A:0.78, C:0.02, G:0.02, T:0.18
Consensus pattern (12 bp):
AAAATAAATAAA
Found at i:79441475 original size:18 final size:17
Alignment explanation
Indices: 79441452--79441494 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 17
79441442 TAAAATTAAT
79441452 AATAAAATAA-ATAAACAA
1 AATAAAATAAGA-AAA-AA
79441470 AATAAAATAAGAAAAAA
1 AATAAAATAAGAAAAAA
79441487 AATAAAAT
1 AATAAAAT
79441495 TTCAAAAAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 10 0.42
18 13 0.54
19 1 0.04
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.16
Consensus pattern (17 bp):
AATAAAATAAGAAAAAA
Found at i:79441572 original size:27 final size:27
Alignment explanation
Indices: 79441542--79441605 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
79441532 TTTTAAAAAA
* * *
79441542 TATTTAAAATATTATGATTTCTTATAT-
1 TATTTAAAAAATTATAATTT-TTAAATG
*
79441569 TATTAAAAAAATTATAATTTTTAAATG
1 TATTTAAAAAATTATAATTTTTAAATG
79441596 TATTTAAAAA
1 TATTTAAAAA
79441606 TTGTATTTAA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
26 5 0.16
27 26 0.84
ACGTcount: A:0.47, C:0.02, G:0.03, T:0.48
Consensus pattern (27 bp):
TATTTAAAAAATTATAATTTTTAAATG
Found at i:79441985 original size:21 final size:21
Alignment explanation
Indices: 79441960--79442046 Score: 63
Period size: 22 Copynumber: 4.0 Consensus size: 21
79441950 TAAAAAATAT
79441960 TTTTAAAAATAATAATTAAAA
1 TTTTAAAAATAATAATTAAAA
*
79441981 TTTTAAAAA-AATATTATAAAACA
1 TTTTAAAAATAATA--ATTAAA-A
*
79442004 TTTTAAATAT-AT-ATTACAAA
1 TTTTAAAAATAATAATTA-AAA
*
79442024 TTTTTTAAAATTAATAATATAAA
1 --TTTTAAAAATAATAAT-TAAA
79442047 TTAAATAAGA
Statistics
Matches: 51, Mismatches: 5, Indels: 17
0.70 0.07 0.23
Matches are distributed among these distances:
20 8 0.16
21 11 0.22
22 13 0.25
23 13 0.25
24 4 0.08
25 2 0.04
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (21 bp):
TTTTAAAAATAATAATTAAAA
Found at i:79442047 original size:23 final size:22
Alignment explanation
Indices: 79441958--79442048 Score: 62
Period size: 23 Copynumber: 4.1 Consensus size: 22
79441948 GTTAAAAAAT
*
79441958 ATTTTTAAAAATAATAAT-TAA
1 ATTTTTTAAAATAATAATATAA
* * *
79441979 A-ATTTTAAAAAAATATTATAAA
1 ATTTTTTAAAATAATAATAT-AA
** * *
79442001 ACATTTT-AAATATATATTACAA
1 ATTTTTTAAAATA-ATAATATAA
79442023 ATTTTTTAAAATTAATAATATAA
1 ATTTTTTAAAA-TAATAATATAA
79442046 ATT
1 ATT
79442049 AAATAAGAAA
Statistics
Matches: 54, Mismatches: 10, Indels: 10
0.73 0.14 0.14
Matches are distributed among these distances:
20 12 0.22
21 2 0.04
22 14 0.26
23 24 0.44
24 2 0.04
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (22 bp):
ATTTTTTAAAATAATAATATAA
Found at i:79442076 original size:36 final size:37
Alignment explanation
Indices: 79442036--79442110 Score: 102
Period size: 37 Copynumber: 2.1 Consensus size: 37
79442026 TTTTAAAATT
*
79442036 AATAATAT-AAA-TTAAATAAGAAAAATAAAT-TAAGAA
1 AATAATATAAAACTTAAAAAAG-AAAA-AAATCTAAGAA
79442072 AATAATATAAAACTTAAAAAAGAAAAAAATCTAAGAA
1 AATAATATAAAACTTAAAAAAGAAAAAAATCTAAGAA
79442109 AA
1 AA
79442111 GAGATAAAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
36 12 0.34
37 15 0.43
38 8 0.23
ACGTcount: A:0.71, C:0.03, G:0.05, T:0.21
Consensus pattern (37 bp):
AATAATATAAAACTTAAAAAAGAAAAAAATCTAAGAA
Found at i:79442081 original size:18 final size:18
Alignment explanation
Indices: 79442039--79442129 Score: 64
Period size: 19 Copynumber: 4.9 Consensus size: 18
79442029 TAAAATTAAT
*
79442039 AATATAAATTAA-ATAAG
1 AATATAAATTAAGAAAAG
* *
79442056 AAAAATAAATTAAGAAAAT
1 -AATATAAATTAAGAAAAG
79442075 AATATAAAACTTAA-AAAAG
1 AATAT-AAA-TTAAGAAAAG
*
79442094 AA-AAAAATCTAAGAAAAG
1 AATATAAAT-TAAGAAAAG
79442112 AGATA-AAATATAAGAAAA
1 A-ATATAAAT-TAAGAAAA
79442130 AAAGTAAAAA
Statistics
Matches: 59, Mismatches: 7, Indels: 13
0.75 0.09 0.16
Matches are distributed among these distances:
16 1 0.02
17 6 0.10
18 22 0.37
19 25 0.42
20 5 0.08
ACGTcount: A:0.70, C:0.02, G:0.08, T:0.20
Consensus pattern (18 bp):
AATATAAATTAAGAAAAG
Found at i:79442110 original size:19 final size:20
Alignment explanation
Indices: 79442088--79442140 Score: 56
Period size: 19 Copynumber: 2.7 Consensus size: 20
79442078 ATAAAACTTA
*
79442088 AAAAAGA-AAAAAATCTAAG
1 AAAAAGAGAAAAAATATAAG
*
79442107 -AAAAGAGATAAAATATAAG
1 AAAAAGAGAAAAAATATAAG
*
79442126 AAAAAAAGTAAAAAA
1 AAAAAGAG-AAAAAA
79442141 GTAAAAAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
18 6 0.22
19 10 0.37
20 6 0.22
21 5 0.19
ACGTcount: A:0.75, C:0.02, G:0.11, T:0.11
Consensus pattern (20 bp):
AAAAAGAGAAAAAATATAAG
Found at i:79442418 original size:25 final size:26
Alignment explanation
Indices: 79442385--79442437 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 26
79442375 TTTACTGTAG
*
79442385 AAAATGGGT-TATTATTTTACATAATT
1 AAAATGGGTGGATTATTTTA-ATAATT
*
79442411 AAAA-GGGTGGGTTATTTTAATAATT
1 AAAATGGGTGGATTATTTTAATAATT
79442436 AA
1 AA
79442438 TTTATTTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.40, C:0.02, G:0.17, T:0.42
Consensus pattern (26 bp):
AAAATGGGTGGATTATTTTAATAATT
Found at i:79446717 original size:15 final size:15
Alignment explanation
Indices: 79446697--79446750 Score: 56
Period size: 15 Copynumber: 3.5 Consensus size: 15
79446687 AAAAAACTTA
79446697 ATATAAATAATGTAT
1 ATATAAATAATGTAT
*
79446712 ATATAAAAATAAT-AAT
1 ATAT--AAATAATGTAT
79446728 AATATAAATAATGTAT
1 -ATATAAATAATGTAT
*
79446744 ATGTAAA
1 ATATAAA
79446751 AATAATAATA
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
15 17 0.53
16 4 0.12
17 11 0.34
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.35
Consensus pattern (15 bp):
ATATAAATAATGTAT
Found at i:79446723 original size:17 final size:17
Alignment explanation
Indices: 79446701--79446756 Score: 71
Period size: 17 Copynumber: 3.4 Consensus size: 17
79446691 AACTTAATAT
79446701 AAATAATGTATATATAA
1 AAATAATGTATATATAA
* *
79446718 AAATAAT-AATA-ATAT
1 AAATAATGTATATATAA
*
79446733 AAATAATGTATATGTAA
1 AAATAATGTATATATAA
79446750 AAATAAT
1 AAATAAT
79446757 AATAATATAG
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
15 10 0.31
16 6 0.19
17 16 0.50
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (17 bp):
AAATAATGTATATATAA
Found at i:79446736 original size:32 final size:32
Alignment explanation
Indices: 79446695--79446765 Score: 133
Period size: 32 Copynumber: 2.2 Consensus size: 32
79446685 GAAAAAAACT
79446695 TAATATAAATAATGTATATATAAAAATAATAA
1 TAATATAAATAATGTATATATAAAAATAATAA
*
79446727 TAATATAAATAATGTATATGTAAAAATAATAA
1 TAATATAAATAATGTATATATAAAAATAATAA
79446759 TAATATA
1 TAATATA
79446766 GGAAAGTGTT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (32 bp):
TAATATAAATAATGTATATATAAAAATAATAA
Found at i:79458434 original size:38 final size:38
Alignment explanation
Indices: 79458375--79458480 Score: 105
Period size: 37 Copynumber: 2.8 Consensus size: 38
79458365 CATTTTTAAG
*
79458375 AATAT-AAAGAATATATATAAGTATGTATATG-ATGTA-A
1 AATATGAAA-AATATATATAAGTATGTATAAGAAT-TAGA
* *
79458412 AATATGCATAAATATATGTAAGTA--TATAAGAATTATGA
1 AATATG-AAAAATATATATAAGTATGTATAAGAATTA-GA
*
79458450 AATATGAAAAATATATTTAAGTATGTATAAG
1 AATATGAAAAATATATATAAGTATGTATAAG
79458481 TACGTATATA
Statistics
Matches: 57, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
36 7 0.12
37 22 0.39
38 20 0.35
39 8 0.14
ACGTcount: A:0.51, C:0.01, G:0.13, T:0.35
Consensus pattern (38 bp):
AATATGAAAAATATATATAAGTATGTATAAGAATTAGA
Found at i:79458873 original size:19 final size:17
Alignment explanation
Indices: 79458849--79458965 Score: 59
Period size: 16 Copynumber: 6.9 Consensus size: 17
79458839 TAATATTAGA
79458849 AAAATATATATAATAGTGT
1 AAAATATATATAATA-T-T
79458868 AAAATATAACTAATAATATT
1 AAAATAT-A-T-ATAATATT
*
79458888 AAAATATATACAATGA-T
1 AAAATATATATAAT-ATT
* * *
79458905 AATATATATAAAAGA-T
1 AAAATATATATAATATT
* *
79458921 -ATATGTATAT-ATAATT
1 AAAATATATATAAT-ATT
*
79458937 -ATATA-ATATAATATT
1 AAAATATATATAATATT
79458952 AAAATATA-ATAATA
1 AAAATATATATAATA
79458966 CGACATAAAA
Statistics
Matches: 80, Mismatches: 9, Indels: 21
0.73 0.08 0.19
Matches are distributed among these distances:
14 1 0.01
15 16 0.20
16 19 0.24
17 17 0.21
18 2 0.03
19 8 0.10
20 9 0.11
21 2 0.03
22 6 0.08
ACGTcount: A:0.57, C:0.02, G:0.04, T:0.37
Consensus pattern (17 bp):
AAAATATATATAATATT
Found at i:79459351 original size:6 final size:6
Alignment explanation
Indices: 79459309--79459342 Score: 59
Period size: 6 Copynumber: 5.5 Consensus size: 6
79459299 ATAAAAATAT
79459309 ATACTA ATACATA ATACTA ATACTA ATACTA ATA
1 ATACTA ATAC-TA ATACTA ATACTA ATACTA ATA
79459343 ATACTAATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 21 0.78
7 6 0.22
ACGTcount: A:0.53, C:0.15, G:0.00, T:0.32
Consensus pattern (6 bp):
ATACTA
Found at i:79459354 original size:12 final size:12
Alignment explanation
Indices: 79459304--79459345 Score: 57
Period size: 12 Copynumber: 3.3 Consensus size: 12
79459294 ACATAATAAA
79459304 AATATATACTAAT
1 AATA-ATACTAAT
79459317 ACATAATACTAAT
1 A-ATAATACTAAT
*
79459330 ACTAATACTAAT
1 AATAATACTAAT
79459342 AATA
1 AATA
79459346 CTAATAATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
12 13 0.50
13 10 0.38
14 3 0.12
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33
Consensus pattern (12 bp):
AATAATACTAAT
Found at i:79459843 original size:11 final size:11
Alignment explanation
Indices: 79459827--79459862 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
79459817 GAAAAAAAAA
79459827 GAAGAGAGAGG
1 GAAGAGAGAGG
*
79459838 GAAGAGAGAAG
1 GAAGAGAGAGG
79459849 GAAGAGAGAAGG
1 GAAGAGAG-AGG
79459861 GA
1 GA
79459863 GGGGGGAAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 18 0.82
12 4 0.18
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (11 bp):
GAAGAGAGAGG
Found at i:79464438 original size:51 final size:51
Alignment explanation
Indices: 79464278--79464435 Score: 280
Period size: 51 Copynumber: 3.1 Consensus size: 51
79464268 ACTTCTGATC
* * *
79464278 AGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAGTGATA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
79464329 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
*
79464380 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
79464431 AGTGA
1 AGTGA
79464436 TAAATGTGAT
Statistics
Matches: 103, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 103 1.00
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (51 bp):
AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
Found at i:79466689 original size:27 final size:27
Alignment explanation
Indices: 79466659--79466718 Score: 120
Period size: 27 Copynumber: 2.2 Consensus size: 27
79466649 GACAAATCAA
79466659 AAACTAAAAATAAAATCACAATAATAT
1 AAACTAAAAATAAAATCACAATAATAT
79466686 AAACTAAAAATAAAATCACAATAATAT
1 AAACTAAAAATAAAATCACAATAATAT
79466713 AAACTA
1 AAACTA
79466719 GATGTGTGCA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.67, C:0.12, G:0.00, T:0.22
Consensus pattern (27 bp):
AAACTAAAAATAAAATCACAATAATAT
Found at i:79466714 original size:16 final size:16
Alignment explanation
Indices: 79466668--79466715 Score: 52
Period size: 16 Copynumber: 3.3 Consensus size: 16
79466658 AAAACTAAAA
79466668 ATAAAATCACAATAAT
1 ATAAAATCACAATAAT
*
79466684 AT-AAA-C-TAA-AA-
1 ATAAAATCACAATAAT
79466695 ATAAAATCACAATAAT
1 ATAAAATCACAATAAT
79466711 ATAAA
1 ATAAA
79466716 CTAGATGTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 10
0.68 0.05 0.27
Matches are distributed among these distances:
11 2 0.08
12 5 0.20
13 3 0.12
14 3 0.12
15 5 0.20
16 7 0.28
ACGTcount: A:0.67, C:0.10, G:0.00, T:0.23
Consensus pattern (16 bp):
ATAAAATCACAATAAT
Found at i:79467037 original size:30 final size:30
Alignment explanation
Indices: 79467002--79467060 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
79466992 TATTTTATTG
*
79467002 TTAATTTTTTTATTATTTTA-AAGACATTTA
1 TTAATTTTGTTATTATTTTAGAA-ACATTTA
79467032 TTAATTTTGTTATTATTTTAGAAACATTT
1 TTAATTTTGTTATTATTTTAGAAACATTT
79467061 GCTTGTTAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 25 0.93
31 2 0.07
ACGTcount: A:0.32, C:0.03, G:0.05, T:0.59
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAGAAACATTTA
Found at i:79468684 original size:15 final size:16
Alignment explanation
Indices: 79468664--79468696 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
79468654 GCTCCAAAGT
*
79468664 AGGTTA-TGTTCTTGA
1 AGGTTAGTGATCTTGA
79468679 AGGTTAGTGATCTTGA
1 AGGTTAGTGATCTTGA
79468695 AG
1 AG
79468697 AGTTCTCTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.24, C:0.06, G:0.30, T:0.39
Consensus pattern (16 bp):
AGGTTAGTGATCTTGA
Found at i:79468824 original size:28 final size:29
Alignment explanation
Indices: 79468781--79468844 Score: 78
Period size: 28 Copynumber: 2.2 Consensus size: 29
79468771 TTGCTAGTAA
*
79468781 AATTTAAATATGATATTAATA-TATTTTAT
1 AATTTAAAAATGATATTAATATTATTTT-T
* *
79468810 ATTTTAAAAAT-ATATTTATATTATTTTT
1 AATTTAAAAATGATATTAATATTATTTTT
79468838 AATTTAA
1 AATTTAA
79468845 TAGATGGTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
28 15 0.50
29 15 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (29 bp):
AATTTAAAAATGATATTAATATTATTTTT
Found at i:79468946 original size:26 final size:24
Alignment explanation
Indices: 79468916--79468971 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 24
79468906 TTATGTGTTT
* *
79468916 TAAATTATATAATATATCTATGTATA
1 TAAATAATATAATATAT-TATAT-TA
*
79468942 TAAATAATTTAATATATTATATTA
1 TAAATAATATAATATATTATATTA
79468966 TAAATA
1 TAAATA
79468972 TAGAAAACAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
24 8 0.30
25 4 0.15
26 15 0.56
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (24 bp):
TAAATAATATAATATATTATATTA
Found at i:79469190 original size:20 final size:19
Alignment explanation
Indices: 79469163--79469201 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 19
79469153 TTAATGAATA
79469163 ATTTAAAA-TTTGTAAAAAT
1 ATTTAAAACTTT-TAAAAAT
79469182 ATTTAAAAACTTTTAAAAAT
1 ATTT-AAAACTTTTAAAAAT
79469202 TAGCATGAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.22
20 11 0.61
21 3 0.17
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.41
Consensus pattern (19 bp):
ATTTAAAACTTTTAAAAAT
Found at i:79472861 original size:12 final size:12
Alignment explanation
Indices: 79472844--79472868 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
79472834 AAGTATATCA
79472844 GCTTTAGTTTTT
1 GCTTTAGTTTTT
79472856 GCTTTAGTTTTT
1 GCTTTAGTTTTT
79472868 G
1 G
79472869 AGGTATAGAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.08, G:0.20, T:0.64
Consensus pattern (12 bp):
GCTTTAGTTTTT
Found at i:79473897 original size:22 final size:24
Alignment explanation
Indices: 79473836--79473904 Score: 76
Period size: 22 Copynumber: 3.0 Consensus size: 24
79473826 CTCGACTTTC
79473836 ATTTTCATATGCTTATCAAATATA
1 ATTTTCATATGCTTATCAAATATA
* *
79473860 AGTATT-ATAT--TAATCAAAT-T-
1 A-TTTTCATATGCTTATCAAATATA
79473880 ATTTTCATATGCTTATCAAATATA
1 ATTTTCATATGCTTATCAAATATA
79473904 A
1 A
79473905 GTATGCTATT
Statistics
Matches: 35, Mismatches: 4, Indels: 12
0.69 0.08 0.24
Matches are distributed among these distances:
19 3 0.09
20 5 0.14
21 1 0.03
22 16 0.46
23 1 0.03
24 6 0.17
25 3 0.09
ACGTcount: A:0.41, C:0.10, G:0.04, T:0.45
Consensus pattern (24 bp):
ATTTTCATATGCTTATCAAATATA
Found at i:79474257 original size:21 final size:21
Alignment explanation
Indices: 79474233--79474278 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
79474223 TACAATCGTG
79474233 TTAATATTTA-ATTACAAATAT
1 TTAATATTTATATT-CAAATAT
* *
79474254 TTAATTTTTATATTTAAATAT
1 TTAATATTTATATTCAAATAT
79474275 TTAA
1 TTAA
79474279 ATATAGTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 19 0.86
22 3 0.14
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.54
Consensus pattern (21 bp):
TTAATATTTATATTCAAATAT
Done.