Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 247 of 255
Found at i:80270101 original size:4 final size:4
Alignment explanation
Indices: 80270092--80270154 Score: 126
Period size: 4 Copynumber: 15.8 Consensus size: 4
80270082 AAAGAAGGTA
80270092 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
80270140 TATG TATG TATG TAT
1 TATG TATG TATG TAT
80270155 AGTGTAAGTG
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 59 1.00
ACGTcount: A:0.25, C:0.00, G:0.24, T:0.51
Consensus pattern (4 bp):
TATG
Found at i:80271520 original size:3 final size:3
Alignment explanation
Indices: 80271514--80271558 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
80271504 TGTTCTTTGC
80271514 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
80271559 TCATAATACG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:80271850 original size:33 final size:35
Alignment explanation
Indices: 80271781--80271852 Score: 112
Period size: 33 Copynumber: 2.1 Consensus size: 35
80271771 TACTGTTTTG
* *
80271781 TTATGTTATGCTTGAAAGTTTTGTTAAGGGATTAC
1 TTATGTTATGCTTGAAAGTTTTGTTAAGAGACTAC
80271816 TTATGTT-TGCTTGAAAG-TTTGTTAAGAGACTAC
1 TTATGTTATGCTTGAAAGTTTTGTTAAGAGACTAC
80271849 TTAT
1 TTAT
80271853 ATTTATATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
33 18 0.51
34 10 0.29
35 7 0.20
ACGTcount: A:0.26, C:0.07, G:0.21, T:0.46
Consensus pattern (35 bp):
TTATGTTATGCTTGAAAGTTTTGTTAAGAGACTAC
Found at i:80275514 original size:6 final size:5
Alignment explanation
Indices: 80275495--80275536 Score: 57
Period size: 5 Copynumber: 8.0 Consensus size: 5
80275485 GCTTAATCCT
*
80275495 AATAA AATAA AATAA CAATAA TAATAA AACAA AATAA AATAA
1 AATAA AATAA AATAA -AATAA -AATAA AATAA AATAA AATAA
80275537 TATCTTCTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
5 23 0.70
6 10 0.30
ACGTcount: A:0.76, C:0.05, G:0.00, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:80275522 original size:22 final size:21
Alignment explanation
Indices: 80275494--80275538 Score: 72
Period size: 22 Copynumber: 2.1 Consensus size: 21
80275484 AGCTTAATCC
*
80275494 TAATAAAATAAAATAACAATAA
1 TAATAAAACAAAATAA-AATAA
80275516 TAATAAAACAAAATAAAATAA
1 TAATAAAACAAAATAAAATAA
80275537 TA
1 TA
80275539 TCTTCTATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 7 0.32
22 15 0.68
ACGTcount: A:0.73, C:0.04, G:0.00, T:0.22
Consensus pattern (21 bp):
TAATAAAACAAAATAAAATAA
Found at i:80278821 original size:11 final size:11
Alignment explanation
Indices: 80278807--80278855 Score: 53
Period size: 11 Copynumber: 4.3 Consensus size: 11
80278797 TTTTTGGGTG
*
80278807 TTTTAATTTTC
1 TTTTTATTTTC
* *
80278818 TTTTTCTCTTTTT
1 -TTTT-TATTTTC
80278831 TTTTTATTTTC
1 TTTTTATTTTC
80278842 TTTTTATTTTC
1 TTTTTATTTTC
80278853 TTT
1 TTT
80278856 CTTTGGGTCA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
11 19 0.61
12 8 0.26
13 4 0.13
ACGTcount: A:0.08, C:0.10, G:0.00, T:0.82
Consensus pattern (11 bp):
TTTTTATTTTC
Found at i:80286012 original size:19 final size:19
Alignment explanation
Indices: 80285996--80286037 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
80285986 AGCTTAATCC
80285996 TAATAAAATAAAATAATAA
1 TAATAAAATAAAATAATAA
*
80286015 TAATAAAATAAAACAA-AA
1 TAATAAAATAAAATAATAA
80286033 TAATA
1 TAATA
80286038 TCTTCTATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 7 0.32
19 15 0.68
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.24
Consensus pattern (19 bp):
TAATAAAATAAAATAATAA
Found at i:80286301 original size:15 final size:17
Alignment explanation
Indices: 80286281--80286313 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
80286271 TCAGGGGGAG
80286281 AAAATAAA-A-ATTGGA
1 AAAATAAATAGATTGGA
80286296 AAAATAAATAGATTGGA
1 AAAATAAATAGATTGGA
80286313 A
1 A
80286314 TGAATTATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
16 1 0.06
17 7 0.44
ACGTcount: A:0.64, C:0.00, G:0.15, T:0.21
Consensus pattern (17 bp):
AAAATAAATAGATTGGA
Found at i:80295327 original size:7 final size:7
Alignment explanation
Indices: 80295311--80295342 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
80295301 CGGTCAACAA
*
80295311 TCTTTAT
1 TCTTTGT
80295318 TCTTTGT
1 TCTTTGT
80295325 TCTTTGT
1 TCTTTGT
80295332 TCTTTGT
1 TCTTTGT
80295339 TCTT
1 TCTT
80295343 CACCCATGCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.03, C:0.16, G:0.09, T:0.72
Consensus pattern (7 bp):
TCTTTGT
Found at i:80296951 original size:17 final size:17
Alignment explanation
Indices: 80296901--80296956 Score: 71
Period size: 17 Copynumber: 3.3 Consensus size: 17
80296891 TGTATTTTTT
80296901 AAAAT-TAAAATCAT-A
1 AAAATATAAAATCATAA
*
80296916 AAAATATAGAATATAATAA
1 AAAATATA-AA-ATCATAA
80296935 AAAATATAAAATCATAA
1 AAAATATAAAATCATAA
80296952 AAAAT
1 AAAAT
80296957 TGAAAATATT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
15 5 0.14
16 2 0.06
17 13 0.37
18 6 0.17
19 9 0.26
ACGTcount: A:0.70, C:0.04, G:0.02, T:0.25
Consensus pattern (17 bp):
AAAATATAAAATCATAA
Found at i:80296971 original size:35 final size:34
Alignment explanation
Indices: 80296901--80296985 Score: 95
Period size: 35 Copynumber: 2.5 Consensus size: 34
80296891 TGTATTTTTT
*
80296901 AAAATTAAAATCATAAAAATATAGAATATAATAA
1 AAAATTAAAATCATAAAAATATAGAAAATAATAA
* **
80296935 AAAATATAAAATCATAAAAA-ATTGAAAAT-ATTT
1 AAAAT-TAAAATCATAAAAATATAGAAAATAATAA
80296968 AAAATTGAAAAT-ATAAAA
1 AAAATT-AAAATCATAAAA
80296986 GAAAAAATAT
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
32 7 0.16
33 12 0.27
34 12 0.27
35 14 0.31
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (34 bp):
AAAATTAAAATCATAAAAATATAGAAAATAATAA
Found at i:80296985 original size:7 final size:7
Alignment explanation
Indices: 80296900--80297003 Score: 63
Period size: 7 Copynumber: 14.3 Consensus size: 7
80296890 TTGTATTTTT
80296900 TAAAAT-
1 TAAAATA
80296906 TAAAATCA
1 TAAAAT-A
80296914 TAAAAATA
1 T-AAAATA
*
80296922 TAGAATA
1 TAAAATA
80296929 T--AATA
1 TAAAATA
*
80296934 AAAAATA
1 TAAAATA
80296941 TAAAATCA
1 TAAAAT-A
*
80296949 TAAAAAA
1 TAAAATA
80296956 TTGAAAATA
1 -T-AAAATA
80296965 TTTAAAAT-
1 --TAAAATA
80296973 TGAAAATA
1 T-AAAATA
*
80296981 TAAAAGA
1 TAAAATA
*
80296988 AAAAATA
1 TAAAATA
80296995 TAAAATA
1 TAAAATA
80297002 TA
1 TA
80297004 TTATAAATAA
Statistics
Matches: 78, Mismatches: 9, Indels: 21
0.72 0.08 0.19
Matches are distributed among these distances:
5 4 0.05
6 7 0.09
7 39 0.50
8 11 0.14
9 15 0.19
10 2 0.03
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (7 bp):
TAAAATA
Found at i:80297108 original size:18 final size:19
Alignment explanation
Indices: 80297078--80297125 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 19
80297068 ATAAGTTATG
*
80297078 AAAAA-TAAAAATATGA-A
1 AAAAATTAACAATATGATA
*
80297095 AAAAATTAACAATATTATA
1 AAAAATTAACAATATGATA
80297114 AAAATATTAACA
1 AAAA-ATTAACA
80297126 CGTGCAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
17 5 0.19
18 9 0.35
19 5 0.19
20 7 0.27
ACGTcount: A:0.69, C:0.04, G:0.02, T:0.25
Consensus pattern (19 bp):
AAAAATTAACAATATGATA
Found at i:80297250 original size:21 final size:22
Alignment explanation
Indices: 80297208--80297250 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
80297198 TAAAATTAAA
80297208 AAAATTATAAAAAAAGATTATAT
1 AAAATTATAAAAAAAGA-TATAT
80297231 AAAATTA-AAAATAAAG-TATA
1 AAAATTATAAAA-AAAGATATA
80297251 AAATACAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 4 0.21
22 4 0.21
23 11 0.58
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (22 bp):
AAAATTATAAAAAAAGATATAT
Found at i:80302527 original size:32 final size:32
Alignment explanation
Indices: 80302491--80302556 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
80302481 TGTATCAAAA
80302491 AGTCAGTTTTGTTGAAGGGTTTCTTTGTACAG
1 AGTCAGTTTTGTTGAAGGGTTTCTTTGTACAG
80302523 AGTCAGTTTTGTTGAAGGGTTTCTTTGTACAG
1 AGTCAGTTTTGTTGAAGGGTTTCTTTGTACAG
80302555 AG
1 AG
80302557 GAATTCAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.20, C:0.09, G:0.29, T:0.42
Consensus pattern (32 bp):
AGTCAGTTTTGTTGAAGGGTTTCTTTGTACAG
Found at i:80315787 original size:13 final size:13
Alignment explanation
Indices: 80315769--80315829 Score: 77
Period size: 13 Copynumber: 4.7 Consensus size: 13
80315759 AGTTTGGCAA
80315769 TGCTTTTGAGAAG
1 TGCTTTTGAGAAG
*
80315782 TGCTTTTGATAAG
1 TGCTTTTGAGAAG
* * * *
80315795 TACTGTGGAAAAG
1 TGCTTTTGAGAAG
80315808 TGCTTTTGAGAAG
1 TGCTTTTGAGAAG
80315821 TGCTTTTGA
1 TGCTTTTGA
80315830 AAAATTTGGT
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 39 1.00
ACGTcount: A:0.25, C:0.08, G:0.28, T:0.39
Consensus pattern (13 bp):
TGCTTTTGAGAAG
Found at i:80316129 original size:33 final size:33
Alignment explanation
Indices: 80316034--80316129 Score: 76
Period size: 34 Copynumber: 2.9 Consensus size: 33
80316024 TAAAATATAA
*
80316034 ATTTTAAATATTTTTAAGAAATAAATATT-AATTAT
1 ATTTTAAATA--TTTAA-ATATAAATATTAAATTAT
* *
80316069 -TTATAAA-ATTT-AAT-TAGAGTATATAAATTAT
1 ATTTTAAATATTTAAATATA-AATAT-TAAATTAT
*
80316100 ATTTTAAATATTTAAATATAACTATTAAAT
1 ATTTTAAATATTTAAATATAAATATTAAAT
80316130 ATTTGTAATT
Statistics
Matches: 49, Mismatches: 5, Indels: 16
0.70 0.07 0.23
Matches are distributed among these distances:
28 2 0.04
29 5 0.10
30 2 0.04
31 9 0.18
32 6 0.12
33 10 0.20
34 13 0.27
35 2 0.04
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.47
Consensus pattern (33 bp):
ATTTTAAATATTTAAATATAAATATTAAATTAT
Found at i:80317949 original size:29 final size:26
Alignment explanation
Indices: 80317917--80317976 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
80317907 TTGTTTAAAT
80317917 TATAAAATTATTATTTTAAAATTTTCTTG
1 TATAAAA-TATTATTTTAAAA-TTT-TTG
** *
80317946 TATATTATATTGTTTTAAAATTTTTG
1 TATAAAATATTATTTTAAAATTTTTG
80317972 TATAA
1 TATAA
80317977 TATTTAATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
26 7 0.26
27 3 0.11
28 12 0.44
29 5 0.19
ACGTcount: A:0.37, C:0.02, G:0.05, T:0.57
Consensus pattern (26 bp):
TATAAAATATTATTTTAAAATTTTTG
Found at i:80318102 original size:26 final size:26
Alignment explanation
Indices: 80318069--80318121 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
80318059 TTTATATGCA
* *
80318069 ATTTCTTTTAAATTTATT-TATATAT
1 ATTTCTTTCAAATCTATTATATATAT
*
80318094 ATTTCCTTTCAAATCTATTATGTATAT
1 ATTT-CTTTCAAATCTATTATATATAT
80318121 A
1 A
80318122 GTTTATTCTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 4 0.17
26 12 0.52
27 7 0.30
ACGTcount: A:0.32, C:0.09, G:0.02, T:0.57
Consensus pattern (26 bp):
ATTTCTTTCAAATCTATTATATATAT
Found at i:80334198 original size:21 final size:22
Alignment explanation
Indices: 80334172--80334232 Score: 76
Period size: 21 Copynumber: 2.9 Consensus size: 22
80334162 ACATATATGT
80334172 ATAATAAT-GATGAAAAT-AATA
1 ATAATAATAG-TGAAAATAAATA
80334193 ATAATAATAGTGAAAATAAATA
1 ATAATAATAGTGAAAATAAATA
80334215 AT-ATAATAGT-AAATATAA
1 ATAATAATAGTGAAA-ATAA
80334233 TAGTAAAAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
20 3 0.08
21 27 0.73
22 7 0.19
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.30
Consensus pattern (22 bp):
ATAATAATAGTGAAAATAAATA
Found at i:80334229 original size:12 final size:12
Alignment explanation
Indices: 80334214--80334239 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
80334204 GAAAATAAAT
80334214 AATATAATAGTA
1 AATATAATAGTA
80334226 AATATAATAGTA
1 AATATAATAGTA
80334238 AA
1 AA
80334240 AAACAGATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (12 bp):
AATATAATAGTA
Found at i:80334313 original size:3 final size:3
Alignment explanation
Indices: 80334298--80334389 Score: 50
Period size: 3 Copynumber: 31.3 Consensus size: 3
80334288 TGCTAATATG
* * ** *
80334298 AAT AAT GAT AAT AAT ACT AAT AAT AAT AAT AA- AAT ACG AAG AAGT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T
* * *
80334343 -AT ATAT AAT -AT AAT AAT AAT ATT AA- AAT -AC AAT AATT AAA AAT
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT
80334386 AAT A
1 AAT A
80334390 TTATATATAA
Statistics
Matches: 67, Mismatches: 14, Indels: 16
0.69 0.14 0.16
Matches are distributed among these distances:
2 8 0.12
3 53 0.79
4 6 0.09
ACGTcount: A:0.62, C:0.03, G:0.04, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:80334402 original size:26 final size:26
Alignment explanation
Indices: 80334342--80334406 Score: 71
Period size: 26 Copynumber: 2.5 Consensus size: 26
80334332 TACGAAGAAG
* *
80334342 TATATATAATATAATAATAATATTAA
1 TATAAATAATATAAAAATAATATTAA
*
80334368 AATACAATAAT-TAAAAATAATATTATA
1 TATA-AATAATATAAAAATAATATTA-A
80334395 TATAAAT-ATATA
1 TATAAATAATATA
80334407 CAATATTCAC
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
25 2 0.06
26 21 0.66
27 9 0.28
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (26 bp):
TATAAATAATATAAAAATAATATTAA
Found at i:80335557 original size:22 final size:22
Alignment explanation
Indices: 80335523--80335575 Score: 88
Period size: 22 Copynumber: 2.4 Consensus size: 22
80335513 GGACTGTGAA
*
80335523 GGTATGGGACTGTTGTAGTGGG
1 GGTATGGGGCTGTTGTAGTGGG
*
80335545 GGTACGGGGCTGTTGTAGTGGG
1 GGTATGGGGCTGTTGTAGTGGG
80335567 GGTATGGGG
1 GGTATGGGG
80335576 TTGCTTCATG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.11, C:0.06, G:0.55, T:0.28
Consensus pattern (22 bp):
GGTATGGGGCTGTTGTAGTGGG
Found at i:80338511 original size:50 final size:51
Alignment explanation
Indices: 80338434--80338562 Score: 172
Period size: 50 Copynumber: 2.5 Consensus size: 51
80338424 GACCATGGCA
*
80338434 ACAAGTGATAAGTCATAGCTTCGGCTACACATATCTAATCAAGGA-AAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACATATCTAATCAAGGACAAA-TG
* * *
80338485 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACATATCTAATCAAGGACAAATG
* * *
80338535 ACAAGTGAAAAGTGGTAGCTTCAGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
80338563 CTGATCAGTG
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
50 42 0.61
51 27 0.39
ACGTcount: A:0.37, C:0.17, G:0.21, T:0.25
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACATATCTAATCAAGGACAAATG
Found at i:80338576 original size:31 final size:31
Alignment explanation
Indices: 80338538--80338717 Score: 263
Period size: 31 Copynumber: 5.8 Consensus size: 31
80338528 ACAAATGACA
*
80338538 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
80338569 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
80338600 AGTGAAAAGTGATAG-TTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTT-CGGCTACCTGATC
*
80338631 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
80338662 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
80338693 AGTGAATAGTGGTAGATTTGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
80338718 AAGTGACAAG
Statistics
Matches: 136, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
30 2 0.01
31 133 0.98
32 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:80338812 original size:47 final size:46
Alignment explanation
Indices: 80338742--80338906 Score: 169
Period size: 47 Copynumber: 3.7 Consensus size: 46
80338732 GAGTGATTTC
* *
80338742 CGTATAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTA
1 CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * *
80338788 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATT
1 C-GTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * *
80338835 CGTATAAGACCATAGCTGCGCTATGGCATC-----GATATATGAATA
1 CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATG-ATA
* * * *
80338877 TGTGTAAGACCATAGCTGGGCTATGGCATC
1 CGTATAAGACCATATCTGGGATATGGCATC
80338907 ATTATGTGAA
Statistics
Matches: 104, Mismatches: 13, Indels: 8
0.83 0.10 0.06
Matches are distributed among these distances:
41 7 0.07
42 29 0.28
46 27 0.26
47 41 0.39
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (46 bp):
CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
Found at i:80338894 original size:42 final size:43
Alignment explanation
Indices: 80338839--80338950 Score: 156
Period size: 42 Copynumber: 2.7 Consensus size: 43
80338829 GTGATTCGTA
* *
80338839 TAAGACCATAGCTGCGCTATGGCATCGA-TATATGAATATGTG
1 TAAGACCATAGCTGAGCTATGGCATCGATTATATGAAGATGTG
* *
80338881 TAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGATGTG
1 TAAGACCATAGCTGAGCTATGGCATCGATTATATGAAGATGTG
* *
80338923 TAAGACCATAGTTGAACTATGGCATCGA
1 TAAGACCATAGCTGAGCTATGGCATCGA
80338951 GAAAACGAAG
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
41 1 0.02
42 60 0.97
43 1 0.02
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (43 bp):
TAAGACCATAGCTGAGCTATGGCATCGATTATATGAAGATGTG
Found at i:80339901 original size:15 final size:15
Alignment explanation
Indices: 80339876--80339916 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
80339866 GATCAGTACA
80339876 TTATA-TATTAACTAG
1 TTATATTATTAAC-AG
80339891 -TATATTATTAACAG
1 TTATATTATTAACAG
80339905 TTATATTGATTA
1 TTATATT-ATTA
80339917 TTTGTTTGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.26
15 13 0.57
16 4 0.17
ACGTcount: A:0.39, C:0.05, G:0.07, T:0.49
Consensus pattern (15 bp):
TTATATTATTAACAG
Found at i:80341053 original size:29 final size:29
Alignment explanation
Indices: 80341020--80341083 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 29
80341010 CTCAAAACTT
* *
80341020 ATTTTATTTAATTATAATATATTTTTAAA
1 ATTTTATTTAATTAAAATATATTTATAAA
* *
80341049 ATTTTATTTTATTAAAATTTATTTATAAA
1 ATTTTATTTAATTAAAATATATTTATAAA
*
80341078 TTTTTA
1 ATTTTA
80341084 CAAATATAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (29 bp):
ATTTTATTTAATTAAAATATATTTATAAA
Found at i:80341071 original size:15 final size:15
Alignment explanation
Indices: 80341022--80341072 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
80341012 CAAAACTTAT
* *
80341022 TTTATTTAATTATAA
1 TTTATTTTATTAAAA
*
80341037 TATA-TTT-TTAAAA
1 TTTATTTTATTAAAA
80341050 TTTTATTTTATTAAAA
1 -TTTATTTTATTAAAA
80341066 TTTATTT
1 TTTATTT
80341073 ATAAATTTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
13 5 0.17
14 5 0.17
15 13 0.45
16 6 0.21
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (15 bp):
TTTATTTTATTAAAA
Found at i:80342296 original size:28 final size:25
Alignment explanation
Indices: 80342264--80342329 Score: 69
Period size: 25 Copynumber: 2.5 Consensus size: 25
80342254 ATCATCATTT
*
80342264 TATTAAAATATAATTAAAAATAATTGTA
1 TATTAAAAT-TAAATAAAAATAA-T-TA
* *
80342292 TATTAATATTAAATACAAATAATTA
1 TATTAAAATTAAATAAAAATAATTA
*
80342317 TATTAATATTAAA
1 TATTAAAATTAAA
80342330 AATTAAAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
25 15 0.43
26 1 0.03
27 11 0.31
28 8 0.23
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (25 bp):
TATTAAAATTAAATAAAAATAATTA
Found at i:80349640 original size:18 final size:19
Alignment explanation
Indices: 80349600--80349641 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
80349590 TATTTTGTTG
80349600 TTATTGTATAATTCTTATT
1 TTATTGTATAATTCTTATT
80349619 TTATTGT-TAATT-TTATT
1 TTATTGTATAATTCTTATT
80349636 ATTATT
1 -TTATT
80349642 TTAGATATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 5 0.23
18 10 0.45
19 7 0.32
ACGTcount: A:0.26, C:0.02, G:0.05, T:0.67
Consensus pattern (19 bp):
TTATTGTATAATTCTTATT
Found at i:80362337 original size:10 final size:10
Alignment explanation
Indices: 80362322--80362351 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
80362312 ATCATACATA
80362322 ACAATTCTTC
1 ACAATTCTTC
80362332 ACAATTCTTC
1 ACAATTCTTC
80362342 ACAATT-TTC
1 ACAATTCTTC
80362351 A
1 A
80362352 TGTTACAGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 4 0.20
10 16 0.80
ACGTcount: A:0.33, C:0.27, G:0.00, T:0.40
Consensus pattern (10 bp):
ACAATTCTTC
Found at i:80366262 original size:13 final size:13
Alignment explanation
Indices: 80366226--80366263 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
80366216 TATTTAAGAA
80366226 ATAATAATTATAAT
1 ATAATAA-TATAAT
*
80366240 -TAAAAATATAAT
1 ATAATAATATAAT
80366252 ATAATAATATAA
1 ATAATAATATAA
80366264 AGTAAAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (13 bp):
ATAATAATATAAT
Found at i:80367765 original size:132 final size:131
Alignment explanation
Indices: 80367517--80367910 Score: 438
Period size: 132 Copynumber: 3.0 Consensus size: 131
80367507 TCACCTTAGA
* * **
80367517 AAATACGAGTGAAATTCCGAA-GAGATATTCGATTATTTTGAACAAACGGGAAATTGCAACCCAG
1 AAATACGAGTGAAATTCCGAAGGA-ATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAG
* * ** * * * * *
80367581 CACGATAGGGTACTATTCCCCGAATTGCCAAGCATCGAATATCGCCTCCGTTTGAAAGGGTTTTT
65 CACGATAGGGCACGATT-CCCGAATTATCAAACACCGAGTATTGCCTTCGTTTGAAAGGGTTTTT
80367646 -AG
129 AAG
* * *
80367648 AAA-ACGTGAGTGAAATTTCGAAGGAATCTTCGATTGTTTTGAAAAAAACGAGAAATCACAACCC
1 AAATAC--GAGTGAAATTCCGAAGGAATATTCGATTGTTTTG-AACAAACGAGAAATCACAACCC
* * ** *
80367712 AACACGTTAGGGCACGATTCCCGAATTATCAAACACCGAGTATTGTATTCGTTTTGGAA-GGTTT
63 AGCACGATAGGGCACGATTCCCGAATTATCAAACACCGAGTATTGCCTTCG-TTTGAAAGGGTTT
*
80367776 TTAAT
127 TTAAG
* *
80367781 AAATACGAGTGAAA-ACCTAAAGGAATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAG
1 AAATACGAGTGAAATTCC-GAAGGAATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAG
* * **
80367845 CACGATAGGGCACGATTCTCGAATTATCAAACACCGAGTATTGCCTTCGTTTTAAAGAATTTTTA
65 CACGATAGGGCACGATTCCCGAATTATCAAACACCGAGTATTGCCTTCGTTTGAAAGGGTTTTTA
80367910 A
130 A
80367911 TAGTTGTGAA
Statistics
Matches: 218, Mismatches: 36, Indels: 18
0.80 0.13 0.07
Matches are distributed among these distances:
130 7 0.03
131 78 0.36
132 86 0.39
133 45 0.21
134 2 0.01
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (131 bp):
AAATACGAGTGAAATTCCGAAGGAATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAGC
ACGATAGGGCACGATTCCCGAATTATCAAACACCGAGTATTGCCTTCGTTTGAAAGGGTTTTTAA
G
Found at i:80367908 original size:131 final size:130
Alignment explanation
Indices: 80367541--80367912 Score: 408
Period size: 131 Copynumber: 2.8 Consensus size: 130
80367531 TTCCGAAGAG
* * ** * *
80367541 ATATTCGATTATTTTGAACAAACGGGAAATTGCAACCCAGCACGATAGGGTACTATTCCCCGAAT
1 ATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCACGATT-CCCGAAT
** * * * * * * * ** *
80367606 TGCCAAGCATCGAATATCGCCTCCGTTTGAAAGGGTTTTT-AGAAAACGTGAGTGAAATTTCGAA
65 TATCAAACACCGAGTATTGCCTTCGTTTTAAA-GGTTTTTAATAAAACG-GAGTGAAACCTCAAA
80367670 GGA
128 GGA
* * * *
80367673 ATCTTCGATTGTTTTGAAAAAAACGAGAAATCACAACCCAACACGTTAGGGCACGATTCCCGAAT
1 ATATTCGATTGTTTTG-AACAAACGAGAAATCACAACCCAGCACGATAGGGCACGATTCCCGAAT
** *
80367738 TATCAAACACCGAGTATTGTATTCGTTTTGGAAGGTTTTTAATAAATAC-GAGTGAAAACCT-AA
65 TATCAAACACCGAGTATTGCCTTCGTTTT-AAAGGTTTTTAATAAA-ACGGAGTG-AAACCTCAA
80367801 AGGA
127 AGGA
*
80367805 ATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCACGATTCTCGAATT
1 ATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCACGATTCCCGAATT
*
80367870 ATCAAACACCGAGTATTGCCTTCGTTTTAAAGAATTTTTAATA
66 ATCAAACACCGAGTATTGCCTTCGTTTTAAAG-GTTTTTAATA
80367913 GTTGTGAAAC
Statistics
Matches: 200, Mismatches: 34, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
130 3 0.01
131 80 0.40
132 72 0.36
133 43 0.22
134 2 0.01
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.28
Consensus pattern (130 bp):
ATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCACGATTCCCGAATT
ATCAAACACCGAGTATTGCCTTCGTTTTAAAGGTTTTTAATAAAACGGAGTGAAACCTCAAAGGA
Found at i:80370393 original size:32 final size:32
Alignment explanation
Indices: 80370357--80370420 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
80370347 ACGGGTGTCA
80370357 TGCTGGCGCTTGGCGTGAGGAGTACGGAGGCG
1 TGCTGGCGCTTGGCGTGAGGAGTACGGAGGCG
80370389 TGCTGGCGCTTGGCGTGAGGAGTACGGAGGCG
1 TGCTGGCGCTTGGCGTGAGGAGTACGGAGGCG
80370421 AAGGCGTAGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.12, C:0.19, G:0.50, T:0.19
Consensus pattern (32 bp):
TGCTGGCGCTTGGCGTGAGGAGTACGGAGGCG
Found at i:80374064 original size:31 final size:31
Alignment explanation
Indices: 80374026--80374236 Score: 296
Period size: 31 Copynumber: 6.8 Consensus size: 31
80374016 ACAAATGACA
* * *
80374026 AGTGAAAAGTTGTAGCTTCAGCTACCAGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
80374057 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
80374088 AGTGAAAAGTGGTAGCTTCTGCTACCTAATT
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
80374119 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
80374150 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * * *
80374181 AATGAAAAATGGTAGCTCCGGCTACTTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
80374212 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
80374237 AAGTGACAAG
Statistics
Matches: 164, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 164 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:80374411 original size:42 final size:42
Alignment explanation
Indices: 80374352--80374462 Score: 136
Period size: 42 Copynumber: 2.6 Consensus size: 42
80374342 TGATTCGTGG
* *
80374352 AAGACCATAGTTGGGCTATGGCATCGA-TATATGAATATGTGT
1 AAGACCATAG-TAGGCTATGGCATCGATTATATGAAGATGTGT
*
80374394 AAGACCATAGCTAGGCTATGGCATC-ATTATGTGAAGATGTGT
1 AAGACCATAG-TAGGCTATGGCATCGATTATATGAAGATGTGT
* *
80374436 AAGACCATAGTTGAACTATGGCATCGA
1 AAGACCATAGTAG-GCTATGGCATCGA
80374463 GAAAACGAAG
Statistics
Matches: 60, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
41 3 0.05
42 56 0.93
43 1 0.02
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.28
Consensus pattern (42 bp):
AAGACCATAGTAGGCTATGGCATCGATTATATGAAGATGTGT
Found at i:80376592 original size:44 final size:44
Alignment explanation
Indices: 80376528--80376622 Score: 172
Period size: 44 Copynumber: 2.1 Consensus size: 44
80376518 AGGTGTTATA
80376528 TATACTTGCTTATTTATTTTTAAAGCAATATGTTTGAATTTGAAT
1 TATA-TTGCTTATTTATTTTTAAAGCAATATGTTTGAATTTGAAT
*
80376573 TATATTGCTTATTTATTTTTAATGCAATATGTTTGAATTTGAAT
1 TATATTGCTTATTTATTTTTAAAGCAATATGTTTGAATTTGAAT
80376617 TATATT
1 TATATT
80376623 AGCACTACTG
Statistics
Matches: 49, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
44 45 0.92
45 4 0.08
ACGTcount: A:0.31, C:0.05, G:0.11, T:0.54
Consensus pattern (44 bp):
TATATTGCTTATTTATTTTTAAAGCAATATGTTTGAATTTGAAT
Found at i:80380512 original size:131 final size:130
Alignment explanation
Indices: 80380346--80380589 Score: 355
Period size: 131 Copynumber: 1.9 Consensus size: 130
80380336 GTGAAATTCT
* ** *
80380346 AAAGGGATATTCGATTATTTTGAACAAACAGGAAATCGCAACCCAGCATGATAGGGCACTATTCC
1 AAAGGAATATTCGATTATTTTGAACAAACAGGAAATCGCAACCCAGCACAATAGGGCACGATT-C
*
80380411 CCGAATTGCCAAACATCAAACATTAACTTCGTTTTGAAGAATTTTTAAAGACATGGGTGAAAAAC
65 CCGAATTGCCAAACATCAAACATTAACTTCGTTTTAAAGAATTTTTAAAGACATGGGTGAAAAAC
80380476 A
130 A
*
80380477 AAAGGAATATTCGATTATTTTGAACAAGC-GAGAAATCGCAACCCAGCACAATAGGGCACGATTC
1 AAAGGAATATTCGATTATTTTGAACAAACAG-GAAATCGCAACCCAGCACAATAGGGCACGATTC
* * ** **
80380541 CCGAATTGTCAAACATCGAGTATTGCCTTCGTTTTAAAGAATTTTTAAA
65 CCGAATTGCCAAACATCAAACATTAACTTCGTTTTAAAGAATTTTTAAA
80380590 TGAATAATTA
Statistics
Matches: 100, Mismatches: 12, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
130 44 0.44
131 56 0.56
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (130 bp):
AAAGGAATATTCGATTATTTTGAACAAACAGGAAATCGCAACCCAGCACAATAGGGCACGATTCC
CGAATTGCCAAACATCAAACATTAACTTCGTTTTAAAGAATTTTTAAAGACATGGGTGAAAAACA
Found at i:80381838 original size:10 final size:9
Alignment explanation
Indices: 80381819--80381855 Score: 58
Period size: 9 Copynumber: 4.1 Consensus size: 9
80381809 CCCAAGGTGA
80381819 TTTTATTTT
1 TTTTATTTT
80381828 TTTTCATTTT
1 TTTT-ATTTT
80381838 TTTTA-TTT
1 TTTTATTTT
80381846 TTTTATTTT
1 TTTTATTTT
80381855 T
1 T
80381856 GAATTTATTC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
8 8 0.31
9 9 0.35
10 9 0.35
ACGTcount: A:0.11, C:0.03, G:0.00, T:0.86
Consensus pattern (9 bp):
TTTTATTTT
Found at i:80382085 original size:28 final size:27
Alignment explanation
Indices: 80382044--80382104 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 27
80382034 CTGCAGAGAA
* **
80382044 AAAAAAGAAGGGAAAGGAA-GTTTTTTT
1 AAAAAAGAAAGGAAA-GAATGAATTTTT
80382071 AAAAAAGCAAAGGAAAGAATGAATTTTT
1 AAAAAAG-AAAGGAAAGAATGAATTTTT
80382099 AAAAAA
1 AAAAAA
80382105 AATCTGACTT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
27 10 0.34
28 19 0.66
ACGTcount: A:0.57, C:0.02, G:0.20, T:0.21
Consensus pattern (27 bp):
AAAAAAGAAAGGAAAGAATGAATTTTT
Found at i:80382675 original size:39 final size:41
Alignment explanation
Indices: 80382613--80382690 Score: 99
Period size: 39 Copynumber: 2.0 Consensus size: 41
80382603 ATTACTCTAA
* *
80382613 TATTATTTATGATATTACATCTTTATTAT-TATTATATGTTT
1 TATTATATATGATATTACATCTTTAATATATA-TATATGTTT
*
80382654 TATTATATATG-TA-TATATCTTTAATATATATATATGT
1 TATTATATATGATATTACATCTTTAATATATATATATGT
80382691 CTATTGTAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
39 19 0.58
40 4 0.12
41 10 0.30
ACGTcount: A:0.33, C:0.04, G:0.05, T:0.58
Consensus pattern (41 bp):
TATTATATATGATATTACATCTTTAATATATATATATGTTT
Found at i:80383948 original size:130 final size:130
Alignment explanation
Indices: 80383679--80384178 Score: 449
Period size: 130 Copynumber: 3.8 Consensus size: 130
80383669 GGAATTCCGG
* * * * *
80383679 AGGGATCTTCGATTGTTTTGAACAAATGAAAAAGCGCAACCCAGCACGATAGGGCTCGATTCTCA
1 AGGGATATTCGATTATTTTGAACAAATGAGAAATCGCAACCCAGCACGATAGGGCACGATTC-CA
* * * * **
80383744 --AATCGCCAAACATCGAACATCGCCTTCGTTTTGAAAGG-TTTTTAATAAACATGAATGAAAAC
65 CGAATTGCCAAACATCG-ACATCACCTTCGTTTT-AAAGGATTTTTAA-AGACATGAGTGAAATT
*
80383806 TTAA
127 TTGA
* * *
80383810 AGGAATATTCGATTATTTTGAAC-AATGAGAAATCACAACCCAGCACGATAGGGCATGATTCC-C
1 AGGGATATTCGATTATTTTGAACAAATGAGAAATCGCAACCCAGCACGATAGGGCACGATTCCAC
*** * * * *
80383873 GAATTATTAAACACCGAGTATTACCTTCGTTTTAAAGGATTTTTAGAAGACCTGAGTGAAATTTT
66 GAATTGCCAAACATCGA-CATCACCTTCGTTTTAAAGGATTTTTA-AAGACATGAGTGAAATTTT
80383938 GA
129 GA
* * * * *
80383940 AGGGATATTTGATTATCTT-AAGC-AATCGAGAAATTGCAACCCAACACGTTAGGGCACGATTCC
1 AGGGATATTCGATTATTTTGAA-CAAAT-GAGAAATCGCAACCCAGCACGATAGGGCACGATTCC
* * * * *
80384003 ACGAATTGCCAAATATCGCACATCACCTTCG-TTTAAGGGATTTTAAAAGAAATAAGTGAAATTT
64 ACGAATTGCCAAACATCG-ACATCACCTTCGTTTTAAAGGATTTTTAAAGACATGAGTGAAATTT
80384067 TGA
128 TGA
* * * * * * * *
80384070 AGTGATATTCGATTATTTTGAGCAAACGCGAAATTGCAACCCAGCACGTTAGGGCACGATCCCGC
1 AGGGATATTCGATTATTTTGAACAAATGAGAAATCGCAACCCAGCACGATAGGGCACGATTCCAC
* * * * *
80384135 GAATTGCCAAATATCAAATATCCCCTTCGTTTTAAAGAATTTTT
66 GAATTGCCAAACATC-GACATCACCTTCGTTTTAAAGGATTTTT
80384179 GAATGAATGA
Statistics
Matches: 299, Mismatches: 57, Indels: 26
0.78 0.15 0.07
Matches are distributed among these distances:
129 9 0.03
130 189 0.63
131 79 0.26
132 21 0.07
133 1 0.00
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (130 bp):
AGGGATATTCGATTATTTTGAACAAATGAGAAATCGCAACCCAGCACGATAGGGCACGATTCCAC
GAATTGCCAAACATCGACATCACCTTCGTTTTAAAGGATTTTTAAAGACATGAGTGAAATTTTGA
Found at i:80388893 original size:131 final size:132
Alignment explanation
Indices: 80388519--80389044 Score: 479
Period size: 131 Copynumber: 4.0 Consensus size: 132
80388509 TATTTGTTTG
* * ** *
80388519 AAAAT-TCCTTAAAACGAAGGCAATATT-TGATTGCTTGAAAATTCGAGAATCATGCCCTATCGT
1 AAAATCTCTTTAAAACGAAGGCAATATTCAGA-TGCTTGGCAATTCGAGAATCGTGCCCTATCGT
*** * * **
80388582 GCTGGGTTTTGATTTCTCATTTGTTCAAAATAATCGAATG-TTCCTTTAGAATCTCACTTGTGTT
65 GCTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAA-GATTCCTTTAGAATTTCACTCATG-T
80388646 TTTCT
128 TTTCT
* * ** *
80388651 -AAATC-C--TAAATA--AAGGCAATGTT-TGATATTTGGCAATTCGCGGAATCGTGCCCTATCG
1 AAAATCTCTTTAAA-ACGAAGGCAATATTCAGATGCTTGGCAATTCG-AGAATCGTGCCCTATCG
* * * * * * * *
80388709 TGCTGGGTTGCAATCTCTTGTTTCTTCAAAATAATCAAAGGTCCCTTCT-GAATTTCACTTACGT
64 TGCTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAAGATTCCTT-TAGAATTTCACTCATGT
80388773 TTTCT
128 TTTCT
* *
80388778 AAAATCTCTTTAAAACGAAGGCAATACTCAG-TGCTTGGCAATTTGAGAATCGTGCCCTATCGTG
1 AAAATCTCTTTAAAACGAAGGCAATATTCAGATGCTTGGCAATTCGAGAATCGTGCCCTATCGTG
* * * * * * *
80388842 CTGGGTTGCGATTTCTCGTTTGTTCGAAACAATCGAAGATTCCTTTGGAATTCCACTCATATCTT
66 CTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAAGATTCCTTTAGAATTTCACTCATGTTTT
80388907 -T
131 CT
* * * * * *
80388908 AAAAACTCTTCAAAACGAAGGTAATATTC-GATGTTTGGCAACTTGGGGAATCGTGCCCTATCGT
1 AAAATCTCTTTAAAACGAAGGCAATATTCAGATGCTTGGCAA-TTCGAGAATCGTGCCCTATCGT
* * *
80388972 GCTAGGTTGCAATTTC-CTGTTTGTTCAAAATAATCTAATATTCCTTTAGAATTTCACTCATGTT
65 GCTGGGTTGCAATTTCTC-GTTTGTTCAAAATAATCGAAGATTCCTTTAGAATTTCACTCATGTT
*
80389036 TTTT
129 TTCT
80389040 AAAAT
1 AAAAT
80389045 TCTAAAAATA
Statistics
Matches: 319, Mismatches: 58, Indels: 34
0.78 0.14 0.08
Matches are distributed among these distances:
127 17 0.05
128 80 0.25
129 7 0.02
130 39 0.12
131 150 0.47
132 25 0.08
133 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.37
Consensus pattern (132 bp):
AAAATCTCTTTAAAACGAAGGCAATATTCAGATGCTTGGCAATTCGAGAATCGTGCCCTATCGTG
CTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAAGATTCCTTTAGAATTTCACTCATGTTTT
CT
Found at i:80389026 original size:262 final size:259
Alignment explanation
Indices: 80388519--80389046 Score: 600
Period size: 262 Copynumber: 2.0 Consensus size: 259
80388509 TATTTGTTTG
* * *
80388519 AAAATTCCTTAAAACGAAGGCAATATTTGATTGCTTGAAAATTCGAGAATCATGCCCTATCGTGC
1 AAAATTCCTTAAAACGAAGGCAATATCTCAGTGCTTGAAAATTCGAGAATCATGCCCTATCGTGC
** * ** * *
80388584 TGGGTTTTGATTTCTCATTTGTTCAAAATAATCGAATGTTCCTTTAGAATCTCACTTGTGTTTTT
66 TGGGTTGCGATTTCTCATTTGTTCAAAACAATCGAATGTTCCTTTAGAATCTCACTCATATCTTT
** * * *
80388649 CTAAATCCTAAATAAAGGCAATGTTTGATATTTGGCAATTCGCGGAATCGTGCCCTATCGTGCTG
131 AAAAATCCTAAATAAAGGCAATATTCGATATTTGGCAATTCGCGGAATCGTGCCCTATCGTGCTA
* * *
80388714 GGTTGCAATCTCTTGTTTCTTCAAAATAATCAAAGGTCCCTTCTGAATTTCACTTACGTTTTCT
196 GGTTGCAATCTCCTGTTTCTTCAAAATAATCAAAGATCCCTTCTGAATTTCACTCACGTTTTCT
* ** * *
80388778 AAAATCTCTTTAAAACGAAGGCAATA-CTCAGTGCTTGGCAATTTGAGAATCGTGCCCTATCGTG
1 AAAAT-TCCTTAAAACGAAGGCAATATCTCAGTGCTTGAAAATTCGAGAATCATGCCCTATCGTG
* * *
80388842 CTGGGTTGCGATTTCTCGTTTGTTCGAAACAATCGAA-GATTCCTTTGGAAT-TCCACTCATATC
65 CTGGGTTGCGATTTCTCATTTGTTCAAAACAATCGAATG-TTCCTTTAGAATCT-CACTCATATC
* * * *
80388905 TTTAAAAACTCTTCAAA-ACGAAGGTAATATTCGATGTTTGGCAACTT-GGGGAATCGTGCCCTA
128 TTTAAAAA-TCCT-AAATA--AAGGCAATATTCGATATTTGGCAA-TTCGCGGAATCGTGCCCTA
* * * * *
80388968 TCGTGCTAGGTTGCAATTTCCTGTTTGTTCAAAATAATCTAATATTCCTT-TAGAATTTCACTCA
188 TCGTGCTAGGTTGCAATCTCCTGTTTCTTCAAAATAATCAAAGATCCCTTCT-GAATTTCACTCA
* *
80389032 TGTTTTTT
252 CGTTTTCT
80389040 AAAATTC
1 AAAATTC
80389047 TAAAAATAAG
Statistics
Matches: 223, Mismatches: 37, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
258 2 0.01
259 91 0.41
260 23 0.10
261 6 0.03
262 99 0.44
263 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (259 bp):
AAAATTCCTTAAAACGAAGGCAATATCTCAGTGCTTGAAAATTCGAGAATCATGCCCTATCGTGC
TGGGTTGCGATTTCTCATTTGTTCAAAACAATCGAATGTTCCTTTAGAATCTCACTCATATCTTT
AAAAATCCTAAATAAAGGCAATATTCGATATTTGGCAATTCGCGGAATCGTGCCCTATCGTGCTA
GGTTGCAATCTCCTGTTTCTTCAAAATAATCAAAGATCCCTTCTGAATTTCACTCACGTTTTCT
Found at i:80389060 original size:259 final size:258
Alignment explanation
Indices: 80388526--80389061 Score: 582
Period size: 259 Copynumber: 2.1 Consensus size: 258
80388516 TTGAAAATTC
* * * * ** *
80388526 CTTAAAACGAAGGCAATATTTGATTGCTTGAAAATTCGAGAATCATGCCCTATCGTGCTGGGTTT
1 CTTAAAAAGAAGGCAATA-CTCAGTGCTTGGCAATTCGAGAATCATGCCCTATCGTGCTGGGTTG
* * ** * * **
80388591 TGATTTCTCATTTGTTCAAAATAATCGAATGTTCCTTTAGAATCTCACTTGTGTTTTTCTAAATC
65 CGATTTCTCATTTGTTCAAAACAATCGAATGTTCCTTTAGAATCTCACTCATATCTTTAAAAATC
* * *
80388656 CTAAATAAAGGCAATGTTTGATATTTGGCAATTCGCGGAATCGTGCCCTATCGTGCTGGGTTGCA
130 CTAAATAAAGGCAATATTCGATATTTGGCAATTCGCGGAATCGTGCCCTATCGTGCTAGGTTGCA
* * *
80388721 ATCTCTTGTTTCTTCAAAATAATCAAAGGTCCCTTCTGAATTTCACTTACGTTTTCTAAAATCT
195 ATCTCCTGTTTCTTCAAAATAATCAAAGATCCCTTCTGAATTTCACTCACGTTTTCTAAAATCT
* * *
80388785 CTTTAAAACGAAGGCAATACTCAGTGCTTGGCAATTTGAGAATCGTGCCCTATCGTGCTGGGTTG
1 C-TTAAAAAGAAGGCAATACTCAGTGCTTGGCAATTCGAGAATCATGCCCTATCGTGCTGGGTTG
* * *
80388850 CGATTTCTCGTTTGTTCGAAACAATCGAA-GATTCCTTTGGAAT-TCCACTCATATCTTTAAAAA
65 CGATTTCTCATTTGTTCAAAACAATCGAATG-TTCCTTTAGAATCT-CACTCATATCTTTAAAAA
* * * *
80388913 CTCTTCAAA-ACGAAGGTAATATTCGATGTTTGGCAACTT-GGGGAATCGTGCCCTATCGTGCTA
128 -TCCT-AAATA--AAGGCAATATTCGATATTTGGCAA-TTCGCGGAATCGTGCCCTATCGTGCTA
* * * * * * *
80388976 GGTTGCAATTTCCTGTTTGTTCAAAATAATCTAATATTCCTT-TAGAATTTCACTCATGTTTTTT
188 GGTTGCAATCTCCTGTTTCTTCAAAATAATCAAAGATCCCTTCT-GAATTTCACTCACGTTTTCT
80389040 AAAAT-T
252 AAAATCT
*
80389046 C-TAAAAATAAGGCAAT
1 CTTAAAAAGAAGGCAAT
80389062 GTCTGATATC
Statistics
Matches: 230, Mismatches: 38, Indels: 18
0.80 0.13 0.06
Matches are distributed among these distances:
258 2 0.01
259 100 0.43
260 21 0.09
261 6 0.03
262 99 0.43
263 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.36
Consensus pattern (258 bp):
CTTAAAAAGAAGGCAATACTCAGTGCTTGGCAATTCGAGAATCATGCCCTATCGTGCTGGGTTGC
GATTTCTCATTTGTTCAAAACAATCGAATGTTCCTTTAGAATCTCACTCATATCTTTAAAAATCC
TAAATAAAGGCAATATTCGATATTTGGCAATTCGCGGAATCGTGCCCTATCGTGCTAGGTTGCAA
TCTCCTGTTTCTTCAAAATAATCAAAGATCCCTTCTGAATTTCACTCACGTTTTCTAAAATCT
Found at i:80389685 original size:11 final size:11
Alignment explanation
Indices: 80389668--80389737 Score: 77
Period size: 11 Copynumber: 6.0 Consensus size: 11
80389658 TTATTTCTAA
80389668 TATGTATATAT
1 TATGTATATAT
*
80389679 CATGTATATAT
1 TATGTATATAT
* *
80389690 TTTAATACTATAT
1 TAT-GTA-TATAT
80389703 TATGTATATAT
1 TATGTATATAT
80389714 TATGTATATATT
1 TATGTATATA-T
80389726 ATATGTATATAT
1 -TATGTATATAT
80389738 ATTTTTAATA
Statistics
Matches: 49, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
11 26 0.53
12 6 0.12
13 17 0.35
ACGTcount: A:0.37, C:0.03, G:0.07, T:0.53
Consensus pattern (11 bp):
TATGTATATAT
Found at i:80389748 original size:24 final size:25
Alignment explanation
Indices: 80389659--80389753 Score: 70
Period size: 24 Copynumber: 3.7 Consensus size: 25
80389649 ACATTATTAT
* * * *
80389659 TATTTCTAATATGTATATATCATGTA
1 TATTTTTAATATATATATGT-ATATA
80389685 TATATTTTAATACTATATTATGTATATA
1 TAT-TTTTAATA-TATA-TATGTATATA
* *
80389713 T-TATGT-ATATATTATATGTATATA
1 TATTTTTAATATA-TATATGTATATA
80389737 TATTTTTAATAT-TATAT
1 TATTTTTAATATATATAT
80389754 TTTTTATATA
Statistics
Matches: 55, Mismatches: 8, Indels: 14
0.71 0.10 0.18
Matches are distributed among these distances:
24 18 0.33
25 8 0.15
26 9 0.16
27 8 0.15
28 8 0.15
29 4 0.07
ACGTcount: A:0.37, C:0.03, G:0.05, T:0.55
Consensus pattern (25 bp):
TATTTTTAATATATATATGTATATA
Found at i:80389754 original size:14 final size:13
Alignment explanation
Indices: 80389732--80389809 Score: 63
Period size: 14 Copynumber: 6.0 Consensus size: 13
80389722 TATTATATGT
80389732 ATATATATTTTTA
1 ATATATATTTTTA
*
80389745 ATATTATATTTTTT
1 ATA-TATATTTTTA
*
80389759 ATATAAATTATTT-
1 ATATATATT-TTTA
80389772 ATATAT-TTTTTA
1 ATATATATTTTTA
* * *
80389784 ATATCACATTATTC
1 ATAT-ATATTTTTA
80389798 ATATAT-TTTTTA
1 ATATATATTTTTA
80389810 TATTATCCCA
Statistics
Matches: 51, Mismatches: 9, Indels: 11
0.72 0.13 0.15
Matches are distributed among these distances:
11 3 0.06
12 10 0.20
13 15 0.29
14 23 0.45
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (13 bp):
ATATATATTTTTA
Found at i:80389763 original size:11 final size:11
Alignment explanation
Indices: 80389683--80389812 Score: 53
Period size: 11 Copynumber: 10.5 Consensus size: 11
80389673 ATATATCATG
*
80389683 TATATATTTTAA
1 TATATATTTT-T
* *
80389695 TACTATATTATG
1 TA-TATATTTTT
* *
80389707 TATATATTATG
1 TATATATTTTT
80389718 TATATATTATATGT
1 TATATATT-T-T-T
80389732 ATATATATTTTT
1 -TATATATTTTT
80389744 AATATTATATTTTT
1 --TA-TATATTTTT
*
80389758 TATATAAATTATT
1 TATAT--ATTTTT
80389771 TATATATTTTT
1 TATATATTTTT
*
80389782 TAATATCACATTATT
1 T-ATAT---ATTTTT
*
80389797 CATATATTTTT
1 TATATATTTTT
80389808 TATAT
1 TATAT
80389813 TATCCCATAA
Statistics
Matches: 95, Mismatches: 10, Indels: 27
0.72 0.08 0.20
Matches are distributed among these distances:
11 35 0.37
12 11 0.12
13 22 0.23
14 14 0.15
15 13 0.14
ACGTcount: A:0.36, C:0.03, G:0.02, T:0.58
Consensus pattern (11 bp):
TATATATTTTT
Found at i:80389794 original size:26 final size:25
Alignment explanation
Indices: 80389749--80389809 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 25
80389739 TTTTTAATAT
*
80389749 TATATTTTTT-ATATAAATTATTTA
1 TATATTTTTTAATATAAATTATTCA
*
80389773 TATATTTTTTAATATCACATTATTCA
1 TATATTTTTTAATAT-AAATTATTCA
80389799 TATATTTTTTA
1 TATATTTTTTA
80389810 TATTATCCCA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
24 10 0.30
25 4 0.12
26 19 0.58
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (25 bp):
TATATTTTTTAATATAAATTATTCA
Found at i:80389872 original size:23 final size:23
Alignment explanation
Indices: 80389835--80389878 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
80389825 ACTTTCAATA
* *
80389835 CTATATTATGCATATATTTTTGC
1 CTATATTATACATATACTTTTGC
*
80389858 CTATATTATATATATACTTTT
1 CTATATTATACATATACTTTT
80389879 AATACTCAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.30, C:0.11, G:0.05, T:0.55
Consensus pattern (23 bp):
CTATATTATACATATACTTTTGC
Found at i:80390166 original size:25 final size:25
Alignment explanation
Indices: 80390123--80390181 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 25
80390113 ATATATATAT
*
80390123 TTATATTTATGTACATATTGGTATT-
1 TTAT-TTTATGTAAATATTGGTATTG
* *
80390148 TTCTTTTATTGTAAATATTGTTATTG
1 TTATTTTA-TGTAAATATTGGTATTG
80390174 TTATTTTA
1 TTATTTTA
80390182 ATATTCTTAG
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
24 4 0.14
25 17 0.61
26 7 0.25
ACGTcount: A:0.25, C:0.03, G:0.10, T:0.61
Consensus pattern (25 bp):
TTATTTTATGTAAATATTGGTATTG
Found at i:80391894 original size:18 final size:18
Alignment explanation
Indices: 80391871--80391913 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
80391861 GAAAAACGAG
* **
80391871 AATTTTTTAAAACAGGAA
1 AATTTTTGAAAACACAAA
80391889 AA-TTTTGAAAACACAAA
1 AATTTTTGAAAACACAAA
80391906 AATTTTTG
1 AATTTTTG
80391914 GGATCCGAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 14 0.67
18 7 0.33
ACGTcount: A:0.49, C:0.07, G:0.09, T:0.35
Consensus pattern (18 bp):
AATTTTTGAAAACACAAA
Found at i:80392482 original size:26 final size:27
Alignment explanation
Indices: 80392439--80392492 Score: 67
Period size: 26 Copynumber: 2.0 Consensus size: 27
80392429 TATGTATACC
*
80392439 AAATAATACATAATAATACT-AAAATA
1 AAATAATACATAACAATACTGAAAATA
*
80392465 AAATAATA-AGTAACAATAGTGAAAATA
1 AAATAATACA-TAACAATACTGAAAATA
80392492 A
1 A
80392493 TAAGCATAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 1 0.04
26 16 0.67
27 7 0.29
ACGTcount: A:0.65, C:0.06, G:0.06, T:0.24
Consensus pattern (27 bp):
AAATAATACATAACAATACTGAAAATA
Found at i:80392527 original size:18 final size:17
Alignment explanation
Indices: 80392501--80392554 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 17
80392491 AATAAGCATA
80392501 ATAATAAATATAATGATAT
1 ATAA-AAATATAAT-ATAT
*
80392520 ATAAAAATAATACTATAT
1 ATAAAAAT-ATAATATAT
*
80392538 ATAAAAGTAT-ATATAT
1 ATAAAAATATAATATAT
80392554 A
1 A
80392555 CGTACAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
16 6 0.19
17 2 0.06
18 15 0.48
19 8 0.26
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (17 bp):
ATAAAAATATAATATAT
Found at i:80392974 original size:29 final size:30
Alignment explanation
Indices: 80392942--80392998 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
80392932 ATTAGCAACG
* *
80392942 TGAAAATGATAA-AATAACAAATATTTAAA
1 TGAAAATAATAAGAACAACAAATATTTAAA
*
80392971 TGAAGATAATAAGAACAACAAATATTTA
1 TGAAAATAATAAGAACAACAAATATTTA
80392999 GAAAGTAAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 10 0.42
30 14 0.58
ACGTcount: A:0.60, C:0.05, G:0.09, T:0.26
Consensus pattern (30 bp):
TGAAAATAATAAGAACAACAAATATTTAAA
Found at i:80403268 original size:26 final size:27
Alignment explanation
Indices: 80403228--80403289 Score: 99
Period size: 26 Copynumber: 2.3 Consensus size: 27
80403218 TAAAATAAAA
*
80403228 AATAAAAAAGGGGAAAATTGGTAATGG
1 AATAAAAAAGGGGAAAATTGGTAATAG
*
80403255 AATAAAAAA-GGGAAAGTTGGTAATAG
1 AATAAAAAAGGGGAAAATTGGTAATAG
80403281 AATAAAAAA
1 AATAAAAAA
80403290 AAGTAAAGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
26 24 0.73
27 9 0.27
ACGTcount: A:0.58, C:0.00, G:0.24, T:0.18
Consensus pattern (27 bp):
AATAAAAAAGGGGAAAATTGGTAATAG
Found at i:80403290 original size:27 final size:27
Alignment explanation
Indices: 80403228--80403299 Score: 92
Period size: 26 Copynumber: 2.7 Consensus size: 27
80403218 TAAAATAAAA
* * *
80403228 AATAAAAAAGGGGAAAATTGGTAATGG
1 AATAAAAAAAGGGAAAGTTGGTAATAG
80403255 AAT-AAAAAAGGGAAAGTTGGTAATAG
1 AATAAAAAAAGGGAAAGTTGGTAATAG
* *
80403281 AATAAAAAAAAGTAAAGTT
1 AATAAAAAAAGGGAAAGTT
80403300 TTTTTTTTTG
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 23 0.59
27 16 0.41
ACGTcount: A:0.57, C:0.00, G:0.24, T:0.19
Consensus pattern (27 bp):
AATAAAAAAAGGGAAAGTTGGTAATAG
Found at i:80404868 original size:3 final size:3
Alignment explanation
Indices: 80404860--80404905 Score: 83
Period size: 3 Copynumber: 15.0 Consensus size: 3
80404850 CTATCATTGC
80404860 ATT ATT ATT ATT ATT AATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
80404906 GTTGTTGTTG
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 39 0.93
4 3 0.07
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:80404910 original size:3 final size:3
Alignment explanation
Indices: 80404904--80404935 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
80404894 ATTATTATTA
80404904 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
80404936 TTATTATTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (3 bp):
TTG
Found at i:80408794 original size:19 final size:19
Alignment explanation
Indices: 80408770--80408808 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
80408760 ATAATGGTTT
80408770 TAAAATACAAAAAAAATAA
1 TAAAATACAAAAAAAATAA
* *
80408789 TAAAATATAATAAAAATAA
1 TAAAATACAAAAAAAATAA
80408808 T
1 T
80408809 GAAGTAATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (19 bp):
TAAAATACAAAAAAAATAA
Found at i:80408854 original size:40 final size:42
Alignment explanation
Indices: 80408793--80408878 Score: 115
Period size: 40 Copynumber: 2.1 Consensus size: 42
80408783 AAATAATAAA
*
80408793 ATATAATAAAAATAATGAAGTAATTAAAA-ACCATACTATATAT
1 ATATAATAAAAATAA-GAAGTAA-TAAAAGACAATACTATATAT
*
80408836 ATATAATAAAAAT-A-AAGTAATAAAAGATAATACTATATAT
1 ATATAATAAAAATAAGAAGTAATAAAAGACAATACTATATAT
80408876 ATA
1 ATA
80408879 CATGTACGTA
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
39 5 0.12
40 21 0.52
42 1 0.03
43 13 0.32
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.30
Consensus pattern (42 bp):
ATATAATAAAAATAAGAAGTAATAAAAGACAATACTATATAT
Found at i:80412828 original size:27 final size:26
Alignment explanation
Indices: 80412798--80412852 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
80412788 CATGTATTCT
80412798 AAAAAAAAGAACATG-AAATTGAATACA
1 AAAAAAAAG-ACA-GAAAATTGAATACA
*
80412825 AAAAAAAAGAGAGAAAATTGAATACA
1 AAAAAAAAGACAGAAAATTGAATACA
80412851 AA
1 AA
80412853 GGATACAGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 1 0.04
26 16 0.62
27 9 0.35
ACGTcount: A:0.69, C:0.05, G:0.13, T:0.13
Consensus pattern (26 bp):
AAAAAAAAGACAGAAAATTGAATACA
Found at i:80413779 original size:22 final size:20
Alignment explanation
Indices: 80413734--80413818 Score: 57
Period size: 19 Copynumber: 3.9 Consensus size: 20
80413724 TTCATAAATT
80413734 TTTTATTTTATTATTATTCA
1 TTTTATTTTATTATTATTCA
80413754 -TTTA-TTTATTTATTATTGCAA
1 TTTTATTTTA-TTATTATT-C-A
* *
80413775 TTTTAGCTTTTCATGAGATTTATTTA
1 TTTTA--TTTT-AT--TA-TTATTCA
80413801 TTTTATTTTATTATTATT
1 TTTTATTTTATTATTATT
80413819 TGTTCATTTA
Statistics
Matches: 51, Mismatches: 3, Indels: 22
0.67 0.04 0.29
Matches are distributed among these distances:
18 4 0.08
19 12 0.24
20 6 0.12
21 2 0.04
22 4 0.08
23 2 0.04
24 4 0.08
25 4 0.08
26 7 0.14
27 1 0.02
28 5 0.10
ACGTcount: A:0.25, C:0.05, G:0.05, T:0.66
Consensus pattern (20 bp):
TTTTATTTTATTATTATTCA
Found at i:80413816 original size:67 final size:62
Alignment explanation
Indices: 80413678--80413866 Score: 205
Period size: 63 Copynumber: 3.1 Consensus size: 62
80413668 TTTTACAAGC
* * * *
80413678 TATTTTATTTTATTATTTACTTATTTATTTA-T-TT--AATTTTGAGTCTTTCATAAAT-TTTT
1 TATTTTATTTTATTA-TTATTTATTCATTTATTATTGAAATTTT-AGCCTTTCATGAATCTTTT
* * *
80413737 TATTTTA--TTATTATTCATTTATTTATTTATTATTGCAATTTTAGCTTTTCATGAGAT-TTATT
1 TATTTTATTTTATTATT-ATTTATTCATTTATTATTGAAATTTTAGCCTTTCATGA-ATCTT-TT
*
80413799 TATTTTATTTTATTATTATTTGTTCATTTATTATTGAAATTTTAGCCTTTCATGAATCTTTT
1 TATTTTATTTTATTATTATTTATTCATTTATTATTGAAATTTTAGCCTTTCATGAATCTTTT
80413861 TATTTT
1 TATTTT
80413867 TACTTATTTA
Statistics
Matches: 112, Mismatches: 8, Indels: 17
0.82 0.06 0.12
Matches are distributed among these distances:
56 2 0.02
57 18 0.16
58 1 0.01
59 9 0.08
60 9 0.08
61 10 0.09
62 19 0.17
63 36 0.32
64 8 0.07
ACGTcount: A:0.25, C:0.06, G:0.05, T:0.63
Consensus pattern (62 bp):
TATTTTATTTTATTATTATTTATTCATTTATTATTGAAATTTTAGCCTTTCATGAATCTTTT
Found at i:80413978 original size:11 final size:11
Alignment explanation
Indices: 80413964--80413988 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
80413954 TTTTTATTAT
80413964 TTTATTATTTA
1 TTTATTATTTA
80413975 TTTATTATTTA
1 TTTATTATTTA
80413986 TTT
1 TTT
80413989 GACCTTTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (11 bp):
TTTATTATTTA
Found at i:80414042 original size:3 final size:3
Alignment explanation
Indices: 80414034--80414088 Score: 58
Period size: 3 Copynumber: 18.3 Consensus size: 3
80414024 CTTATTACAC
* * * *
80414034 ATT ATT ATT ATT ATT ATT ATT -TAT GTT AAT ATT ATA ATT ATT GTT
1 ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT
80414079 ATT ATT ATT A
1 ATT ATT ATT A
80414089 AATTGTTATT
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
2 1 0.02
3 41 0.95
4 1 0.02
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:80428248 original size:217 final size:209
Alignment explanation
Indices: 80427782--80428707 Score: 719
Period size: 217 Copynumber: 4.3 Consensus size: 209
80427772 ATGTGCAAAT
* * *
80427782 ATCAAAGCTTTTTGGCTCAAGCTGTGTAACTTGTGGTTATGTTATAATATTATGTTGGTTGATTC
1 ATCAAAGCTTTTTGGCTCAAGCTGTGTAACTTGTGGTTGTTTTATAATATTATGTTGGTTGAGTC
* *
80427847 TTTTGTTGCCAATAGTATGGTAGAATTCCTTCACGTTCTTGTTTGTTGTTCCTAAGTTGTTTTCT
66 TTTTGGTGCCAATAGTATGGTAGAATACCTTCACGTTCTTGTTTGTTGTTCCTAAGTTGTTTTCT
* **
80427912 AGCATTTATACCCTATTTTCATGTTGAATGAAAATGACCAAAAGTTGATTTTAATGCTGGTTTTG
131 AGCATTTAGACCCTATTTTCATGTTGAATGAAAACAACCAAAAGTTGATTTTAATGCTGGTTTTG
80427977 AGTTATATGCAATC
196 AGTTATATGCAATC
* * * * *
80427991 ATCAAAGCTTTTTGACTGAAGCTATGTAAGTTGAGGTTGTTTTATAATATTATGTTGATTGCTTG
1 ATCAAAGCTTTTTGGCTCAAGCTGTGTAACTTGTGGTTGTTTTATAATATTA---TG-TTG---G
* ***
80428056 TTGAGGTCTTTTGGTGCCAATAGTATGGTAGCATACCTTTGTGTTCTTGTTTGTTGTTCCTAAGT
59 TTGA-GTCTTTTGGTGCCAATAGTATGGTAGAATACCTTCACGTTCTTGTTTGTTGTTCCTAAGT
* * * *
80428121 TGTTTTTTAGCATTTGGATCCTATTTTCATGTTGAATGAGAACAACCAAAAGTTGATTTTAATGC
123 TGTTTTCTAGCATTTAGACCCTATTTTCATGTTGAATGAAAACAACCAAAAGTTGATTTTAATGC
*
80428186 -GGTTTTTTAGTTATATGCAATC
188 TGG-TTTTGAGTTATATGCAATC
** *
80428208 ATCAAAGCTTTTTGGCTCAAGCTGTGGGACTTGTGGTTG-------------T-TT-GTTGAGAC
1 ATCAAAGCTTTTTGGCTCAAGCTGTGTAACTTGTGGTTGTTTTATAATATTATGTTGGTTGAGTC
* * * * * *
80428258 ATTCTTGGTGTCAATAGTATGGTAGTACACCTTTATGTTCTTGTTTGTTGTTCCCAAGTTGGTTT
66 -TT-TTGGTGCCAATAGTATGGTAGAATACCTTCACGTTCTTGTTTGTTGTTCCTAAGTT-GTTT
* *
80428323 T-TTGCATTTCA-ATCCTATTTTCATGTTGAATGAAAACAACCAAAAG-TGTATCTCAACGACAT
128 TCTAGCATTT-AGACCCTATTTTCATGTTGAATGAAAACAACCAAAAGTTG-AT-T--------T
* *
80428385 GACAAATTGCCATGGTTAGATGTGGATTTCAAGTTTTATGCAATC
182 ---TAA-TG-C-TGGTT---T-T-G------AGTTATATGCAATC
* *
80428430 ATCAAAGCTTTTTTGGCTCAAGCTGTGTAACTTGAGGTTGTCTTATAATATTATGTTTGTTGTTT
1 ATCAAAGCT-TTTTGGCTCAAGCTGTGTAACTTGTGGTTGTTTTATAATATTA----TGTTG---
* * * * *
80428495 GTTGAGATCCTTTGGTGCCAATAGCATGGTAGCATACATGCCTTTATGTTCTTGTTTGTTGTTCC
58 GTTGAG-TCTTTTGGTGCCAATAGTATGGTAG---A-ATACCTTCACGTTCTTGTTTGTTGTTCC
* * ** * *
80428560 TAAGTTGTTTTTTA-CAATTTTGATTCTATTTT-ATGTTCAATGAAAACGACCAAAAGTTTG-TT
118 TAAGTTGTTTTCTAGC-ATTTAGACCCTATTTTCATGTTGAATGAAAACAACCAAAAG-TTGATT
* *
80428622 TTAATG-TGGTTTTTAAGTTATAAGCAATC
181 TTAATGCTGG-TTTTGAGTTATATGCAATC
* *
80428651 CTCAAAGCTTTTTGGCTCAAGCTGTGTAACTTGTGGTTGTTTTTTAATATTATGTTG
1 ATCAAAGCTTTTTGGCTCAAGCTGTGTAACTTGTGGTTGTTTTATAATATTATGTTG
80428708 ATTGCTAGTT
Statistics
Matches: 577, Mismatches: 65, Indels: 143
0.74 0.08 0.18
Matches are distributed among these distances:
194 2 0.00
195 9 0.02
196 94 0.16
197 6 0.01
199 2 0.00
201 1 0.00
205 1 0.00
208 2 0.00
209 47 0.08
210 1 0.00
211 2 0.00
212 4 0.01
213 3 0.01
214 1 0.00
215 1 0.00
216 12 0.02
217 161 0.28
220 40 0.07
221 20 0.03
222 22 0.04
223 27 0.05
228 1 0.00
229 1 0.00
231 3 0.01
232 2 0.00
234 2 0.00
235 2 0.00
238 1 0.00
240 1 0.00
241 2 0.00
244 19 0.03
245 7 0.01
246 2 0.00
247 29 0.05
248 45 0.08
249 2 0.00
ACGTcount: A:0.24, C:0.13, G:0.20, T:0.44
Consensus pattern (209 bp):
ATCAAAGCTTTTTGGCTCAAGCTGTGTAACTTGTGGTTGTTTTATAATATTATGTTGGTTGAGTC
TTTTGGTGCCAATAGTATGGTAGAATACCTTCACGTTCTTGTTTGTTGTTCCTAAGTTGTTTTCT
AGCATTTAGACCCTATTTTCATGTTGAATGAAAACAACCAAAAGTTGATTTTAATGCTGGTTTTG
AGTTATATGCAATC
Found at i:80433404 original size:32 final size:32
Alignment explanation
Indices: 80433359--80433429 Score: 99
Period size: 32 Copynumber: 2.2 Consensus size: 32
80433349 TAGCTATTGG
80433359 TAATTAAAATCAATGCT-TAATTAAGCCTTGATT
1 TAATT-AAATCAATGCTAT-ATTAAGCCTTGATT
*
80433392 TAATTAAATCAATGCTATATTAAGGCTTGATT
1 TAATTAAATCAATGCTATATTAAGCCTTGATT
*
80433424 CAATTA
1 TAATTA
80433430 TCTAATTATC
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
32 29 0.83
33 6 0.17
ACGTcount: A:0.39, C:0.11, G:0.10, T:0.39
Consensus pattern (32 bp):
TAATTAAATCAATGCTATATTAAGCCTTGATT
Found at i:80438429 original size:11 final size:11
Alignment explanation
Indices: 80438415--80438470 Score: 58
Period size: 11 Copynumber: 4.9 Consensus size: 11
80438405 AGATAAATAT
80438415 TATTTTATTAA
1 TATTTTATTAA
*
80438426 TATTTTAATAATA
1 TATTTT-ATTA-A
*
80438439 TATTTTATTAT
1 TATTTTATTAA
* *
80438450 TATTTTAGTAT
1 TATTTTATTAA
80438461 TATTTTATTA
1 TATTTTATTA
80438471 GTATATAAAG
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
11 25 0.66
12 6 0.16
13 7 0.18
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:80438442 original size:24 final size:24
Alignment explanation
Indices: 80438410--80438470 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 24
80438400 TAATTAGATA
80438410 AATATTATTTTATTAATATTTTAAT
1 AATA-TATTTTATTAATATTTTAAT
* *
80438435 AATATATTTTATTATTATTTTAGT
1 AATATATTTTATTAATATTTTAAT
80438459 -AT-TATTTTATTA
1 AATATATTTTATTA
80438471 GTATATAAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
22 10 0.29
23 2 0.06
24 18 0.53
25 4 0.12
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (24 bp):
AATATATTTTATTAATATTTTAAT
Found at i:80440655 original size:46 final size:46
Alignment explanation
Indices: 80440603--80440817 Score: 324
Period size: 46 Copynumber: 4.7 Consensus size: 46
80440593 TGTGTGCTCT
*
80440603 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
80440649 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
80440695 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
80440741 GTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
80440787 ATGACA-GAAAATGAGTAAGCCCATAGTTGAA
1 CTGATATG-AAATGAGTAAGACCATGGTTGAA
80440818 TCACTAAATG
Statistics
Matches: 160, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
45 1 0.01
46 159 0.99
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:80441487 original size:37 final size:37
Alignment explanation
Indices: 80441430--80441581 Score: 173
Period size: 37 Copynumber: 3.9 Consensus size: 37
80441420 TATAATCACT
*
80441430 TATCAC-TTGTC-CCTGATCAGATAAGTGTAGCCACC
1 TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCACC
* *
80441465 TATCACTTTGTTTCTTGATCAGATAAGTGTAGCCACT
1 TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCACC
80441502 TATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCAC
1 TATCACTTTGTCTCTTGATCAGATAAGTGTAGC-----C-A-C-C
*
80441547 TTATCACTTTGTCTCTTGATCAGATAAGTATAGCC
1 -TATCACTTTGTCTCTTGATCAGATAAGTGTAGCC
80441582 GAAGCTATCA
Statistics
Matches: 100, Mismatches: 6, Indels: 16
0.82 0.05 0.13
Matches are distributed among these distances:
35 6 0.06
36 4 0.04
37 54 0.54
41 1 0.01
42 1 0.01
43 1 0.01
44 1 0.01
46 32 0.32
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (37 bp):
TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCACC
Found at i:80441565 original size:46 final size:46
Alignment explanation
Indices: 80441498--80441766 Score: 331
Period size: 46 Copynumber: 5.6 Consensus size: 46
80441488 TAAGTGTAGC
* **
80441498 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
80441544 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
80441590 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAGGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
80441642 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* ** *
80441688 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
80441740 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
80441767 AGTACTCAAA
Statistics
Matches: 197, Mismatches: 14, Indels: 24
0.84 0.06 0.10
Matches are distributed among these distances:
46 111 0.56
48 1 0.01
49 2 0.01
50 1 0.01
52 82 0.42
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:80441617 original size:52 final size:52
Alignment explanation
Indices: 80441541--80441760 Score: 290
Period size: 52 Copynumber: 4.3 Consensus size: 52
80441531 TAGCTAAAGC
* *
80441541 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* *
80441594 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAGGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
80441646 TATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * ** *
80441692 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
80441744 TATCACTTTGTCACTTG
1 TATCACTTT-TCACTTG
80441761 ATCAGAAGTA
Statistics
Matches: 146, Mismatches: 14, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
46 42 0.29
49 1 0.01
52 85 0.58
53 18 0.12
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
Found at i:80441663 original size:98 final size:98
Alignment explanation
Indices: 80441498--80441766 Score: 448
Period size: 98 Copynumber: 2.7 Consensus size: 98
80441488 TAAGTGTAGC
* * *
80441498 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACT
80441563 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
65 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
** *
80441597 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAGGCTATCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
*
80441662 GATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 GATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
80441695 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
80441760 GATCAGA
66 GATCAGA
80441767 AGTACTCAAA
Statistics
Matches: 158, Mismatches: 12, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
98 149 0.94
99 9 0.06
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (98 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
GATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:80443035 original size:52 final size:48
Alignment explanation
Indices: 80443016--80443218 Score: 265
Period size: 46 Copynumber: 4.3 Consensus size: 48
80443006 TGACAAGTGG
* *
80443016 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
80443062 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC-A---A
* *
80443114 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
** *
80443160 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
80443206 AAAGTGATAAGTG
1 AAAGTGATAAGTG
80443219 GCTACACTTA
Statistics
Matches: 144, Mismatches: 7, Indels: 12
0.88 0.04 0.07
Matches are distributed among these distances:
46 100 0.69
52 44 0.31
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (48 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
Found at i:80443070 original size:98 final size:98
Alignment explanation
Indices: 80442950--80443218 Score: 457
Period size: 98 Copynumber: 2.7 Consensus size: 98
80442940 TTTGAGTACT
*
80442950 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
80443015 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
**
80443048 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
80443113 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* *
80443146 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGAC-AAGT
*
80443211 GATAAGTG
65 GAAAAGTG
80443219 GCTACACTTA
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
98 149 0.93
99 11 0.07
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.28
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
Found at i:80443226 original size:37 final size:37
Alignment explanation
Indices: 80443182--80443364 Score: 316
Period size: 37 Copynumber: 5.0 Consensus size: 37
80443172 GATAGCTTTA
*
80443182 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
80443219 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
80443256 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
80443293 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
80443330 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
80443365 ATCATACGTA
Statistics
Matches: 141, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
35 11 0.08
36 4 0.03
37 126 0.89
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:80444680 original size:49 final size:49
Alignment explanation
Indices: 80444619--80444762 Score: 216
Period size: 49 Copynumber: 2.9 Consensus size: 49
80444609 ATGTGAACAT
* *
80444619 GTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTGTGGCATCGGTAA
1 GTGA-TATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
* *
80444669 GTGATATGTGATTTCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAT
1 GTGATATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
* * *
80444718 GTGATTTGTGATTACGTGTAAGACCATAGTTGGACTATGGCATCG
1 GTGATATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCG
80444763 AGAAAACGAA
Statistics
Matches: 87, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
49 83 0.95
50 4 0.05
ACGTcount: A:0.23, C:0.15, G:0.31, T:0.32
Consensus pattern (49 bp):
GTGATATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
Found at i:80447975 original size:52 final size:48
Alignment explanation
Indices: 80447956--80448158 Score: 265
Period size: 46 Copynumber: 4.3 Consensus size: 48
80447946 TGACAAGTGG
* *
80447956 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
80448002 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC-A---A
* *
80448054 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
** *
80448100 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
80448146 AAAGTGATAAGTG
1 AAAGTGATAAGTG
80448159 GCTACACTTA
Statistics
Matches: 144, Mismatches: 7, Indels: 12
0.88 0.04 0.07
Matches are distributed among these distances:
46 100 0.69
52 44 0.31
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (48 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
Found at i:80448010 original size:98 final size:98
Alignment explanation
Indices: 80447890--80448158 Score: 457
Period size: 98 Copynumber: 2.7 Consensus size: 98
80447880 TTTGAGTACT
*
80447890 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
80447955 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
**
80447988 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
80448053 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* *
80448086 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGAC-AAGT
*
80448151 GATAAGTG
65 GAAAAGTG
80448159 GCTACACTTA
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
98 149 0.93
99 11 0.07
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.28
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
Found at i:80448166 original size:37 final size:37
Alignment explanation
Indices: 80448122--80448304 Score: 316
Period size: 37 Copynumber: 5.0 Consensus size: 37
80448112 GATAGCTTTA
*
80448122 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
80448159 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
80448196 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
80448233 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
80448270 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
80448305 ATCATACGTA
Statistics
Matches: 141, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
35 11 0.08
36 4 0.03
37 126 0.89
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:80451477 original size:52 final size:49
Alignment explanation
Indices: 80451392--80451758 Score: 424
Period size: 46 Copynumber: 7.6 Consensus size: 49
80451382 TTTGAGTACT
* *
80451392 TCTGATCAAGTG---ATAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCAGCTACACTTA
* * *
80451438 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCAGCTACACTTA
* *
80451490 TCTGATCAAGTG---ATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCAGCTACACTTA
80451536 TCTGATCAAGTGAC---AAAGTGATAAGTGATAGCTTCAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCAGCTACACTTA
*
80451582 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTACACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCAGCTACACTTA
*
80451634 TCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTC-GTCTATACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCAG-CTACACTTA
* *
80451686 TCTGATCAAGAGAC---AAAGTGATAAGTGATAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCAGCTACACTTA
*
80451732 TCTGATCAAGAGAC---AAAGTGATAAGTG
1 TCTGATCAAGTGACAATAAAGTGATAAGTG
80451759 GCTGCACTTA
Statistics
Matches: 291, Mismatches: 14, Indels: 32
0.86 0.04 0.09
Matches are distributed among these distances:
46 154 0.53
47 1 0.00
48 1 0.00
49 2 0.01
50 1 0.00
51 1 0.00
52 131 0.45
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (49 bp):
TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCAGCTACACTTA
Found at i:80451512 original size:98 final size:97
Alignment explanation
Indices: 80451392--80451758 Score: 492
Period size: 98 Copynumber: 3.7 Consensus size: 97
80451382 TTTGAGTACT
* *
80451392 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGT-
*
80451457 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
65 GAAAGTGATAAGTGATAGCTTCGGCTATACTTA
* *
80451490 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAC-----
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
* *
80451550 AAAGTGATAAGTGATAGCTTCAGCTACACTTA
66 AAAGTGATAAGTGATAGCTTCGGCTATACTTA
*
80451582 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
1 TCTGATCAAGTG---A-T--AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGA
*
80451647 CAAGTGAAAAGTGATAAGTGATAGCTTCGTCTATACTTA
60 CAAGTG-AAAGTGATAAGTGATAGCTTCGGCTATACTTA
* * * *
80451686 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGAC-AAGT
80451751 GATAAGTG
65 GA-AAGTG
80451759 GCTGCACTTA
Statistics
Matches: 239, Mismatches: 16, Indels: 27
0.85 0.06 0.10
Matches are distributed among these distances:
92 41 0.17
95 1 0.00
96 1 0.00
98 145 0.61
99 10 0.04
101 1 0.00
104 40 0.17
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (97 bp):
TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
AAAGTGATAAGTGATAGCTTCGGCTATACTTA
Found at i:80451740 original size:196 final size:196
Alignment explanation
Indices: 80451406--80451758 Score: 598
Period size: 196 Copynumber: 1.8 Consensus size: 196
80451396 ATCAAGTGAT
* * *
80451406 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTA
* * * *
80451471 ATAGCTTCGGCTATACTTATCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTA
*
80451536 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
131 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
80451601 G
196 G
* *
80451602 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTA
* *
80451667 ATAGCTTCGTCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTA
66 ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTA
80451732 TCTGATCAAGAGACAAAGTGATAAGTG
131 TCTGATCAAGAGACAAAGTGATAAGTG
80451759 GCTGCACTTA
Statistics
Matches: 145, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
196 145 1.00
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (196 bp):
AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTA
ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTA
TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
G
Found at i:80451770 original size:37 final size:37
Alignment explanation
Indices: 80451722--80451867 Score: 226
Period size: 37 Copynumber: 4.0 Consensus size: 37
80451712 GATAGCTTTA
*
80451722 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
80451759 GCTGCACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
80451796 GCTACACTTATCTGATCAAGAAACAAAGTGAT-AGTTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAG-TG
**
80451833 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
80451868 ATCATACGTA
Statistics
Matches: 102, Mismatches: 5, Indels: 6
0.90 0.04 0.05
Matches are distributed among these distances:
35 9 0.09
36 8 0.08
37 85 0.83
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:80456841 original size:17 final size:17
Alignment explanation
Indices: 80456821--80456883 Score: 54
Period size: 17 Copynumber: 3.7 Consensus size: 17
80456811 TTTAAAAATT
80456821 ATATTTAATATAATAAA
1 ATATTTAATATAATAAA
* * * *
80456838 ATATTTATTATATTTAT
1 ATATTTAATATAATAAA
* * *
80456855 TTTTTTAATAAAATAAA
1 ATATTTAATATAATAAA
*
80456872 ATATTTATTATA
1 ATATTTAATATA
80456884 TTTATCGTAG
Statistics
Matches: 31, Mismatches: 15, Indels: 0
0.67 0.33 0.00
Matches are distributed among these distances:
17 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (17 bp):
ATATTTAATATAATAAA
Found at i:80456870 original size:34 final size:34
Alignment explanation
Indices: 80456824--80456888 Score: 121
Period size: 34 Copynumber: 1.9 Consensus size: 34
80456814 AAAAATTATA
*
80456824 TTTAATATAATAAAATATTTATTATATTTATTTT
1 TTTAATAAAATAAAATATTTATTATATTTATTTT
80456858 TTTAATAAAATAAAATATTTATTATATTTAT
1 TTTAATAAAATAAAATATTTATTATATTTAT
80456889 CGTAGTGTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (34 bp):
TTTAATAAAATAAAATATTTATTATATTTATTTT
Found at i:80466563 original size:50 final size:50
Alignment explanation
Indices: 80466488--80466627 Score: 271
Period size: 50 Copynumber: 2.8 Consensus size: 50
80466478 TCGAATACTA
*
80466488 CTATTTCCAAGTGTGAATTTGGGTTAATTGAATTGAGTTTATGAATTCTC
1 CTATTTCCAAGTGTGAATTTGGGTTAATTGAACTGAGTTTATGAATTCTC
80466538 CTATTTCCAAGTGTGAATTTGGGTTAATTGAACTGAGTTTATGAATTCTC
1 CTATTTCCAAGTGTGAATTTGGGTTAATTGAACTGAGTTTATGAATTCTC
80466588 CTATTTCCAAGTGTGAATTTGGGTTAATTGAACTGAGTTT
1 CTATTTCCAAGTGTGAATTTGGGTTAATTGAACTGAGTTT
80466628 TTTCACATTA
Statistics
Matches: 89, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
50 89 1.00
ACGTcount: A:0.26, C:0.11, G:0.21, T:0.43
Consensus pattern (50 bp):
CTATTTCCAAGTGTGAATTTGGGTTAATTGAACTGAGTTTATGAATTCTC
Found at i:80469073 original size:3 final size:3
Alignment explanation
Indices: 80469065--80469090 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
80469055 TGGAATCATG
80469065 GAT GAT GAT GAT GAT GAT GAT GAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GA
80469091 ACCAGGCAGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.35, T:0.31
Consensus pattern (3 bp):
GAT
Found at i:80470173 original size:10 final size:9
Alignment explanation
Indices: 80470158--80470183 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
80470148 AATATTTTTG
80470158 AAAAAAATT
1 AAAAAAATT
80470167 AAAAAAATT
1 AAAAAAATT
80470176 AAAAAAAT
1 AAAAAAAT
80470184 AGATGTGTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAAAAAATT
Found at i:80474209 original size:18 final size:18
Alignment explanation
Indices: 80474170--80474203 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
80474160 CGGTTGAATC
*
80474170 AATTTTATAATTTTTATG
1 AATTTTATAATATTTATG
80474188 AATTTT-TAATATTTAT
1 AATTTTATAATATTTAT
80474204 TTAATTGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (18 bp):
AATTTTATAATATTTATG
Found at i:80477100 original size:4 final size:4
Alignment explanation
Indices: 80477091--80477120 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
80477081 ATTCTATCAC
*
80477091 TTCT TTCT TTCT TTCT TTCT TTCT TACT TT
1 TTCT TTCT TTCT TTCT TTCT TTCT TTCT TT
80477121 AAGTCTTAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.03, C:0.23, G:0.00, T:0.73
Consensus pattern (4 bp):
TTCT
Found at i:80483548 original size:15 final size:15
Alignment explanation
Indices: 80483528--80483565 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
80483518 AAATTCAAAC
80483528 TTGACTTAACTCGAT
1 TTGACTTAACTCGAT
80483543 TTGACTTAACTCGAT
1 TTGACTTAACTCGAT
80483558 TTGA-TTAA
1 TTGACTTAA
80483566 GTCAATCTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 4 0.17
15 19 0.83
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.42
Consensus pattern (15 bp):
TTGACTTAACTCGAT
Found at i:80487478 original size:22 final size:22
Alignment explanation
Indices: 80487447--80487512 Score: 96
Period size: 22 Copynumber: 3.0 Consensus size: 22
80487437 ATCCTTAAAC
*
80487447 TATATTTTATAGGTACAATAGAG
1 TATA-TTTATAGGTACAATACAG
* *
80487470 TGTATTTATACGTACAATACAG
1 TATATTTATAGGTACAATACAG
80487492 TATATTTATAGGTACAATACA
1 TATATTTATAGGTACAATACA
80487513 AATATATATT
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
22 35 0.92
23 3 0.08
ACGTcount: A:0.39, C:0.09, G:0.14, T:0.38
Consensus pattern (22 bp):
TATATTTATAGGTACAATACAG
Found at i:80488530 original size:29 final size:30
Alignment explanation
Indices: 80488487--80488566 Score: 108
Period size: 29 Copynumber: 2.6 Consensus size: 30
80488477 GAATCAAATC
*
80488487 AAATCAAAATTTCATGTATAAAATTATACA-
1 AAATCAAAA-TTCATATATAAAATTATACAT
*
80488517 AAATCAAAATTCATATATAACATTATACATT
1 AAATCAAAATTCATATATAAAATTATACA-T
*
80488548 AAATCAAATTTCATATATA
1 AAATCAAAATTCATATATA
80488567 GTTTTAATGT
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
29 18 0.40
30 9 0.20
31 18 0.40
ACGTcount: A:0.53, C:0.11, G:0.01, T:0.35
Consensus pattern (30 bp):
AAATCAAAATTCATATATAAAATTATACAT
Found at i:80489606 original size:32 final size:31
Alignment explanation
Indices: 80489570--80489641 Score: 85
Period size: 30 Copynumber: 2.3 Consensus size: 31
80489560 AAATTAATGT
* *
80489570 ATGATAAAATTGTAT-TTTGTCTCCTTTCAAAA
1 ATGATAAAATT-TATGTTTAT-TCCCTTCAAAA
80489602 ATGATAAAA-TTATGTTTATTCCCTTCAAAA
1 ATGATAAAATTTATGTTTATTCCCTTCAAAA
*
80489632 ATGATGAAAT
1 ATGATAAAAT
80489642 AATAATTAGT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
30 21 0.60
31 5 0.14
32 9 0.26
ACGTcount: A:0.39, C:0.11, G:0.10, T:0.40
Consensus pattern (31 bp):
ATGATAAAATTTATGTTTATTCCCTTCAAAA
Found at i:80490864 original size:16 final size:16
Alignment explanation
Indices: 80490839--80490869 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
80490829 TTAAGTATAC
*
80490839 ATTTTTAAAAAAAATT
1 ATTTTAAAAAAAAATT
80490855 ATTTTAAAAAAAAAT
1 ATTTTAAAAAAAAAT
80490870 ATAAAACATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
ATTTTAAAAAAAAATT
Found at i:80493390 original size:19 final size:20
Alignment explanation
Indices: 80493366--80493405 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
80493356 AGAGGACCAA
80493366 AATGAAA-CATAA-GAAACAG
1 AATGAAAGCA-AACGAAACAG
80493385 AATGAAAGCAAACGAAACAG
1 AATGAAAGCAAACGAAACAG
80493405 A
1 A
80493406 GAAGAAACAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.62, C:0.12, G:0.17, T:0.07
Consensus pattern (20 bp):
AATGAAAGCAAACGAAACAG
Found at i:80494702 original size:18 final size:19
Alignment explanation
Indices: 80494681--80494719 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
80494671 ATATATAAAT
80494681 ATATATATTGAATA-TTGA
1 ATATATATTGAATATTTGA
*
80494699 ATATATATTGATTATTTGA
1 ATATATATTGAATATTTGA
80494718 AT
1 AT
80494720 TGAATTGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (19 bp):
ATATATATTGAATATTTGA
Found at i:80495070 original size:39 final size:40
Alignment explanation
Indices: 80494956--80495070 Score: 117
Period size: 38 Copynumber: 2.9 Consensus size: 40
80494946 CTTCGACCTC
* *
80494956 GAGTCGATGAGACACTGGGTGTCACTATATTTCTTCGGATA
1 GAGTCGATGAGACACTGGGTGTCA-AATATTACTTCGGATA
* ** ** * *
80494997 GATTCGATGAGGTACTGGGTACCAACT-TTACTTCGGCTA
1 GAGTCGATGAGACACTGGGTGTCAAATATTACTTCGGATA
*
80495036 G-GTCGATGAGACACTGGGTGTCAAATATTGCTTCG
1 GAGTCGATGAGACACTGGGTGTCAAATATTACTTCG
80495071 AACTATCCGA
Statistics
Matches: 57, Mismatches: 16, Indels: 4
0.74 0.21 0.05
Matches are distributed among these distances:
38 19 0.33
39 18 0.32
40 1 0.02
41 19 0.33
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.30
Consensus pattern (40 bp):
GAGTCGATGAGACACTGGGTGTCAAATATTACTTCGGATA
Found at i:80520254 original size:18 final size:18
Alignment explanation
Indices: 80520231--80520302 Score: 117
Period size: 18 Copynumber: 4.0 Consensus size: 18
80520221 GACCGTTTAA
80520231 GGTACTATTCACGTATAC
1 GGTACTATTCACGTATAC
80520249 GGTACTATTCACGTATAC
1 GGTACTATTCACGTATAC
**
80520267 GACACTATTCACGTATAC
1 GGTACTATTCACGTATAC
*
80520285 GGTACTGTTCACGTATAC
1 GGTACTATTCACGTATAC
80520303 AGTAGTTGGG
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 49 1.00
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.32
Consensus pattern (18 bp):
GGTACTATTCACGTATAC
Found at i:80520281 original size:36 final size:36
Alignment explanation
Indices: 80520234--80520302 Score: 129
Period size: 36 Copynumber: 1.9 Consensus size: 36
80520224 CGTTTAAGGT
80520234 ACTATTCACGTATACGGTACTATTCACGTATACGAC
1 ACTATTCACGTATACGGTACTATTCACGTATACGAC
*
80520270 ACTATTCACGTATACGGTACTGTTCACGTATAC
1 ACTATTCACGTATACGGTACTATTCACGTATAC
80520303 AGTAGTTGGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (36 bp):
ACTATTCACGTATACGGTACTATTCACGTATACGAC
Found at i:80528710 original size:3 final size:3
Alignment explanation
Indices: 80528702--80528727 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
80528692 TCATCTCTAA
80528702 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
80528728 GAAATGGCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:80534296 original size:46 final size:46
Alignment explanation
Indices: 80534229--80534404 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
80534219 TATTTGGGCA
*
80534229 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
80534275 TCCGAACTTGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
80534320 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
80534368 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80534405 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.58
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:80534384 original size:93 final size:93
Alignment explanation
Indices: 80534225--80534397 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
80534215 GGGATATTTG
* * * *
80534225 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATGTCCGAACTTGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
80534290 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
80534318 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
80534383 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
80534398 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:80535981 original size:9 final size:9
Alignment explanation
Indices: 80535967--80535992 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
80535957 TCTCCTCCCT
80535967 AATTTCACA
1 AATTTCACA
80535976 AATTTCACA
1 AATTTCACA
80535985 AATTTCAC
1 AATTTCAC
80535993 TTTCACACTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.42, C:0.23, G:0.00, T:0.35
Consensus pattern (9 bp):
AATTTCACA
Found at i:80539802 original size:24 final size:24
Alignment explanation
Indices: 80539745--80539803 Score: 91
Period size: 24 Copynumber: 2.5 Consensus size: 24
80539735 GGTTTAATGC
* *
80539745 AAATGGAGATATTTTGGAGAGATG
1 AAATGGATATATTTTGGAAAGATG
*
80539769 AAATGAATATATTTTGGAAAGATG
1 AAATGGATATATTTTGGAAAGATG
80539793 AAATGGATATA
1 AAATGGATATA
80539804 AATGGAGAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.44, C:0.00, G:0.25, T:0.31
Consensus pattern (24 bp):
AAATGGATATATTTTGGAAAGATG
Found at i:80539895 original size:20 final size:19
Alignment explanation
Indices: 80539869--80539933 Score: 62
Period size: 20 Copynumber: 3.4 Consensus size: 19
80539859 AATATTTTTA
80539869 ATTATGTAGTGATTCAAAG
1 ATTATGTAGTGATTCAAAG
* ***
80539888 ACTTATGTAAT-ATTTTTA-
1 A-TTATGTAGTGATTCAAAG
80539906 ATTATGTAGTGATTCAAAG
1 ATTATGTAGTGATTCAAAG
80539925 ATTTATGTA
1 A-TTATGTA
80539934 ATGTTTTTAA
Statistics
Matches: 34, Mismatches: 8, Indels: 7
0.69 0.16 0.14
Matches are distributed among these distances:
17 8 0.24
18 5 0.15
19 6 0.18
20 15 0.44
ACGTcount: A:0.35, C:0.05, G:0.15, T:0.45
Consensus pattern (19 bp):
ATTATGTAGTGATTCAAAG
Found at i:80539898 original size:37 final size:37
Alignment explanation
Indices: 80539844--80539956 Score: 192
Period size: 37 Copynumber: 3.1 Consensus size: 37
80539834 TTATGTTTTA
*
80539844 ATTC-AAGACTTGTGTAATATTTTTAATTATGTAGTG
1 ATTCAAAGACTTATGTAATATTTTTAATTATGTAGTG
80539880 ATTCAAAGACTTATGTAATATTTTTAATTATGTAGTG
1 ATTCAAAGACTTATGTAATATTTTTAATTATGTAGTG
* *
80539917 ATTCAAAGATTTATGTAATGTTTTTAATTATGTAGTG
1 ATTCAAAGACTTATGTAATATTTTTAATTATGTAGTG
80539954 ATT
1 ATT
80539957 TAATTCGGGT
Statistics
Matches: 73, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
36 4 0.05
37 69 0.95
ACGTcount: A:0.33, C:0.04, G:0.15, T:0.48
Consensus pattern (37 bp):
ATTCAAAGACTTATGTAATATTTTTAATTATGTAGTG
Found at i:80539912 original size:17 final size:17
Alignment explanation
Indices: 80539856--80539950 Score: 55
Period size: 17 Copynumber: 5.2 Consensus size: 17
80539846 TCAAGACTTG
80539856 TGTAATATTTTTAATTA
1 TGTAATATTTTTAATTA
* ***
80539873 TGTAGTGATTCAAAGACTTA
1 TGTAAT-ATTTTTA-A-TTA
80539893 TGTAATATTTTTAATTA
1 TGTAATATTTTTAATTA
* ***
80539910 TGTAGTGATTCAAAGATTTA
1 TGTAAT-ATTTTTA-A-TTA
*
80539930 TGTAATGTTTTTAATTA
1 TGTAATATTTTTAATTA
80539947 TGTA
1 TGTA
80539951 GTGATTTAAT
Statistics
Matches: 55, Mismatches: 17, Indels: 12
0.65 0.20 0.14
Matches are distributed among these distances:
17 20 0.36
18 10 0.18
19 9 0.16
20 16 0.29
ACGTcount: A:0.34, C:0.03, G:0.14, T:0.49
Consensus pattern (17 bp):
TGTAATATTTTTAATTA
Found at i:80539971 original size:9 final size:9
Alignment explanation
Indices: 80539957--80540102 Score: 211
Period size: 9 Copynumber: 15.6 Consensus size: 9
80539947 TGTAGTGATT
80539957 TAATTCGGG
1 TAATTCGGG
80539966 TAATTCGGG
1 TAATTCGGG
80539975 TAATTTTCGGG
1 TAA--TTCGGG
80539986 TAATTTTCGGG
1 TAA--TTCGGG
80539997 TAATTCGGG
1 TAATTCGGG
*
80540006 TAATTTGGG
1 TAATTCGGG
80540015 TAATTTTCGGG
1 TAA--TTCGGG
80540026 TAATTCGGG
1 TAATTCGGG
80540035 TAATTCGGG
1 TAATTCGGG
80540044 TAATTCGGG
1 TAATTCGGG
*
80540053 TAAGTCGGG
1 TAATTCGGG
80540062 TAATTCGGG
1 TAATTCGGG
80540071 TAATTCGGG
1 TAATTCGGG
80540080 TAATTCGGG
1 TAATTCGGG
*
80540089 TAATTCAGG
1 TAATTCGGG
80540098 TAATT
1 TAATT
80540103 TTTAACCAAA
Statistics
Matches: 128, Mismatches: 5, Indels: 8
0.91 0.04 0.06
Matches are distributed among these distances:
9 100 0.78
11 28 0.22
ACGTcount: A:0.23, C:0.10, G:0.31, T:0.37
Consensus pattern (9 bp):
TAATTCGGG
Found at i:80540279 original size:12 final size:12
Alignment explanation
Indices: 80540262--80540286 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
80540252 AAGAATTTCG
80540262 GGTCGGTTAACC
1 GGTCGGTTAACC
80540274 GGTCGGTTAACC
1 GGTCGGTTAACC
80540286 G
1 G
80540287 ACTGAACACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.36, T:0.24
Consensus pattern (12 bp):
GGTCGGTTAACC
Found at i:80542081 original size:30 final size:29
Alignment explanation
Indices: 80542047--80542104 Score: 89
Period size: 30 Copynumber: 2.0 Consensus size: 29
80542037 CATAGTATCG
*
80542047 TATCTTGGGTTTCTTTATTCTGGATTTCTC
1 TATCTTGGATTTCTTTATT-TGGATTTCTC
*
80542077 TATCTTGGATTTCTTTATTTGGTTTTCT
1 TATCTTGGATTTCTTTATTTGGATTTCT
80542105 TGTTATTTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 8 0.31
30 18 0.69
ACGTcount: A:0.10, C:0.14, G:0.16, T:0.60
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTTGGATTTCTC
Found at i:80542103 original size:14 final size:14
Alignment explanation
Indices: 80542051--80542105 Score: 65
Period size: 15 Copynumber: 3.8 Consensus size: 14
80542041 GTATCGTATC
*
80542051 TTGGGTTTCTTTAT
1 TTGGATTTCTTTAT
*
80542065 TCTGGATTTCTCTAT
1 T-TGGATTTCTTTAT
80542080 CTTGGATTTCTTTAT
1 -TTGGATTTCTTTAT
*
80542095 TTGGTTTTCTT
1 TTGGATTTCTT
80542106 GTTATTTTGT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
14 11 0.31
15 23 0.66
16 1 0.03
ACGTcount: A:0.09, C:0.13, G:0.16, T:0.62
Consensus pattern (14 bp):
TTGGATTTCTTTAT
Done.