Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 248 of 255
Found at i:80544068 original size:46 final size:46
Alignment explanation
Indices: 80544001--80544176 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
80543991 TATTTGGGCA
80544001 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
80544047 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* **
80544092 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * **
80544140 CCCGAGCTCGTTGAGTTGAGTCCGAGTTTGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80544177 GCGGGTTACT
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.58
47 28 0.26
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:80544156 original size:93 final size:93
Alignment explanation
Indices: 80543997--80544167 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
80543987 GGGATATTTG
***
80543997 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
80544062 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
80544090 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
80544155 TTGAGTCCGAGTT
66 TTGAGTCCGAGTT
80544168 TGCTTATGGG
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:80550871 original size:18 final size:20
Alignment explanation
Indices: 80550835--80550877 Score: 56
Period size: 18 Copynumber: 2.3 Consensus size: 20
80550825 ATATTTTATG
80550835 ATTA-TTTAATTAGATATAT
1 ATTATTTTAATTAGATATAT
80550854 ATTATTTTAA-TA-ATATAT
1 ATTATTTTAATTAGATATAT
*
80550872 TTTATT
1 ATTATT
80550878 ATTATTTCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 11 0.50
19 6 0.27
20 5 0.23
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (20 bp):
ATTATTTTAATTAGATATAT
Found at i:80550889 original size:11 final size:11
Alignment explanation
Indices: 80550869--80550903 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
80550859 TTTAATAATA
*
80550869 TATTTTATTAT
1 TATTTCATTAT
80550880 TATTTCATTAT
1 TATTTCATTAT
*
80550891 TATTTCTTTAT
1 TATTTCATTAT
80550902 TA
1 TA
80550904 ATTATTTAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.69
Consensus pattern (11 bp):
TATTTCATTAT
Found at i:80553098 original size:46 final size:46
Alignment explanation
Indices: 80553046--80553340 Score: 398
Period size: 46 Copynumber: 6.7 Consensus size: 46
80553036 GTGTGCTATT
80553046 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
*
80553092 TGATATGAAAAGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
*
80553138 TGATATGAAAAGTGTAAGACCATGGTTGAAAGATACCAT----A--
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
80553178 TG--A--AAA-GTGTAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
*
80553219 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
*** *
80553265 TGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
** * *
80553311 TGA-CGGAAAATGAGTAAGACCATAGTTGAA
1 TGATATG-AAATGTGTAAGACCATGGTTGAA
80553341 GGCACTATGG
Statistics
Matches: 226, Mismatches: 11, Indels: 24
0.87 0.04 0.09
Matches are distributed among these distances:
35 28 0.12
36 3 0.01
38 1 0.00
39 1 0.00
40 2 0.01
41 2 0.01
42 1 0.00
43 1 0.00
45 4 0.02
46 183 0.81
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.22
Consensus pattern (46 bp):
TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
Found at i:80553186 original size:35 final size:35
Alignment explanation
Indices: 80553140--80553211 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
80553130 TGGCAACCTG
80553140 ATATGAAAAGTGTAAGACCATGGTTGAAAGATACC
1 ATATGAAAAGTGTAAGACCATGGTTGAAAGATACC
80553175 ATATGAAAAGTGTAAGACCATGGTTGAAAGATACC
1 ATATGAAAAGTGTAAGACCATGGTTGAAAGATACC
80553210 AT
1 AT
80553212 GGCAACCTGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.43, C:0.11, G:0.22, T:0.24
Consensus pattern (35 bp):
ATATGAAAAGTGTAAGACCATGGTTGAAAGATACC
Found at i:80553222 original size:127 final size:127
Alignment explanation
Indices: 80553048--80553303 Score: 449
Period size: 127 Copynumber: 2.0 Consensus size: 127
80553038 GTGCTATTTG
*
80553048 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAAGTGTAAGACC
1 ATATGAAAAGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAAGTGTAAGACC
***
80553113 ATGGTTGAAAGATACCATGGCAACCTGATATGAAAAGTGTAAGACCATGGTTGAAAGATACC
66 ATGGTTGAAAGATACCATGGCAACCTGATATGAAAAGAACAAGACCATGGTTGAAAGATACC
*
80553175 ATATGAAAAGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACC
1 ATATGAAAAGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAAGTGTAAGACC
* *
80553240 ATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAACAAGACCATGGTTGAAAGATACC
66 ATGGTTGAAAGATACCATGGCAACCTGATATGAAAAGAACAAGACCATGGTTGAAAGATACC
80553302 AT
1 AT
80553304 GGCAACATGA
Statistics
Matches: 122, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
127 122 1.00
ACGTcount: A:0.40, C:0.14, G:0.23, T:0.23
Consensus pattern (127 bp):
ATATGAAAAGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAAGTGTAAGACC
ATGGTTGAAAGATACCATGGCAACCTGATATGAAAAGAACAAGACCATGGTTGAAAGATACC
Found at i:80553234 original size:81 final size:81
Alignment explanation
Indices: 80553094--80553257 Score: 319
Period size: 81 Copynumber: 2.0 Consensus size: 81
80553084 TGGCAACCTG
80553094 ATATGAAAAGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAAGTGTAAGACC
1 ATATGAAAAGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAAGTGTAAGACC
80553159 ATGGTTGAAAGATACC
66 ATGGTTGAAAGATACC
*
80553175 ATATGAAAAGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACC
1 ATATGAAAAGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAAGTGTAAGACC
80553240 ATGGTTGAAAGATACC
66 ATGGTTGAAAGATACC
80553256 AT
1 AT
80553258 GGCAACGTGA
Statistics
Matches: 82, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 82 1.00
ACGTcount: A:0.40, C:0.13, G:0.23, T:0.23
Consensus pattern (81 bp):
ATATGAAAAGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAAGTGTAAGACC
ATGGTTGAAAGATACC
Found at i:80554668 original size:5 final size:5
Alignment explanation
Indices: 80554658--80554685 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
80554648 CAATTTGTGA
80554658 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
80554686 GAACACACAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:80562037 original size:29 final size:29
Alignment explanation
Indices: 80561995--80562051 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
80561985 TATCTCAAAC
*
80561995 CTAGAAAGTTTTTGAAGAACAAAGGCAAT
1 CTAGAAAATTTTTGAAGAACAAAGGCAAT
80562024 CTAGAAAATTTTTGAAGAACAAAGGCAA
1 CTAGAAAATTTTTGAAGAACAAAGGCAA
80562052 AGATTTTCTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.47, C:0.11, G:0.19, T:0.23
Consensus pattern (29 bp):
CTAGAAAATTTTTGAAGAACAAAGGCAAT
Found at i:80562065 original size:21 final size:21
Alignment explanation
Indices: 80562040--80562079 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
80562030 AATTTTTGAA
80562040 GAACAAAGGCAAAGATTTTCT
1 GAACAAAGGCAAAGATTTTCT
* *
80562061 GAACAAAGGCTAAGTTTTT
1 GAACAAAGGCAAAGATTTT
80562080 ATAACTTTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.40, C:0.12, G:0.20, T:0.28
Consensus pattern (21 bp):
GAACAAAGGCAAAGATTTTCT
Found at i:80580063 original size:130 final size:129
Alignment explanation
Indices: 80579898--80580385 Score: 634
Period size: 130 Copynumber: 3.8 Consensus size: 129
80579888 AAATTCTTCA
* * *
80579898 AAACGAAGACGAAATTTAATGTTCGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAAT
1 AAACGAAGACGAGATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAAT
* *
80579963 TTCGTATTTGCTCAAAATAATCAAATTTCCCTTCGAAATTCCATTCATTTCTTTTAAAATCCCTT
66 TTCGCATTTGCTCAAAATAATCAAATATCCCTTCGAAATTCCATTCA-TTCTTTTAAAATCCCTT
*
80580028 AAACGAAGATGAGATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAAT
1 AAACGAAGACGAGATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAAT
*
80580093 TTCGCATTTGCTCAAAATAATCAAATTTCCCTTCGAAATTCCATTCA------TAAAATCCCTT
66 TTCGCATTTGCTCAAAATAATCAAATATCCCTTCGAAATTCCATTCATTCTTTTAAAATCCCTT
*
80580151 AAACGAAGATGAGATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAAT
1 AAACGAAGACGAGATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAAT
* * * * * *
80580216 TTCGCATTTGCTCAAAATAATCAAATATCACTTTGAAATTTCACTCGTGTCTTTTAAAATCCCTA
66 TTCGCATTTGCTCAAAATAATCAAATATCCCTTCGAAATTCCATTCAT-TCTTTTAAAATCCCTT
* * * * * * * * * *
80580281 AAACGAAGGCGATATTCGGTATTTGGCAATTTGTGGGATCATGCCCTAACGTGTTGGGTAGCAAT
1 AAACGAAGACGAGATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAAT
* *
80580346 TCCTCG-A-TT-CTTTAAAATAATCAAATATCCCTTCAAAATT
66 T--TCGCATTTGC-TCAAAATAATCAAATATCCCTTCGAAATT
80580386 TCACTCGGCT
Statistics
Matches: 321, Mismatches: 27, Indels: 20
0.87 0.07 0.05
Matches are distributed among these distances:
123 117 0.36
129 1 0.00
130 199 0.62
131 1 0.00
132 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (129 bp):
AAACGAAGACGAGATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAAT
TTCGCATTTGCTCAAAATAATCAAATATCCCTTCGAAATTCCATTCATTCTTTTAAAATCCCTT
Found at i:80580365 original size:253 final size:252
Alignment explanation
Indices: 80579898--80580385 Score: 683
Period size: 253 Copynumber: 1.9 Consensus size: 252
80579888 AAATTCTTCA
80579898 AAACGAAGACGAAATTTAATGTTCGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAAT
1 AAACGAAGACGAAATTTAATGTTCGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAAT
* * * * * *
80579963 TTCGTATTTGCTCAAAATAATCAAATTTCCCTTCGAAATTCCATTCATTTCTTTTAAAATCCCTT
66 TTCGCATTTGCTCAAAATAATCAAATATCACTTCGAAATTCCACTCATGTCTTTTAAAATCCCTA
* * * * *
80580028 AAACGAAGATGAGATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAAT
131 AAACGAAGACGAGATTCGATATTTGGCAATTCGCGGAATCATGCCCTAACGTGTTGGGTAGCAAT
* *
80580093 TTCGCATTTGCTCAAAATAATCAAATTTCCCTTCGAAATTCCATTCATAAAATCCCTT
196 TTCGCATTT-CTCAAAATAATCAAATATCCCTTCAAAATTCCATTCATAAAATCCCTT
* * * *
80580151 AAACGAAGATGAGATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAAT
1 AAACGAAGACGAAATTTAATGTTCGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAAT
* * *
80580216 TTCGCATTTGCTCAAAATAATCAAATATCACTTTGAAATTTCACTCGTGTCTTTTAAAATCCCTA
66 TTCGCATTTGCTCAAAATAATCAAATATCACTTCGAAATTCCACTCATGTCTTTTAAAATCCCTA
* * * * * *
80580281 AAACGAAGGCGATATTCGGTATTTGGCAATTTGTGGGATCATGCCCTAACGTGTTGGGTAGCAAT
131 AAACGAAGACGAGATTCGATATTTGGCAATTCGCGGAATCATGCCCTAACGTGTTGGGTAGCAAT
*
80580346 TCCTCG-A-TTCTTTAAAATAATCAAATATCCCTTCAAAATT
196 T--TCGCATTTC-TCAAAATAATCAAATATCCCTTCAAAATT
80580386 TCACTCGGCT
Statistics
Matches: 205, Mismatches: 27, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
252 1 0.00
253 200 0.98
254 1 0.00
255 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (252 bp):
AAACGAAGACGAAATTTAATGTTCGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAAT
TTCGCATTTGCTCAAAATAATCAAATATCACTTCGAAATTCCACTCATGTCTTTTAAAATCCCTA
AAACGAAGACGAGATTCGATATTTGGCAATTCGCGGAATCATGCCCTAACGTGTTGGGTAGCAAT
TTCGCATTTCTCAAAATAATCAAATATCCCTTCAAAATTCCATTCATAAAATCCCTT
Found at i:80582224 original size:14 final size:14
Alignment explanation
Indices: 80582205--80582272 Score: 73
Period size: 14 Copynumber: 4.5 Consensus size: 14
80582195 TTCATTTACA
80582205 TTGCATTGCATCAT
1 TTGCATTGCATCAT
80582219 TTGCATTGCATCAT
1 TTGCATTGCATCAT
**
80582233 TTGCATCATTTGCATTGT
1 TTG---CA-TTGCATCAT
80582251 ATTGCATTGCATCAT
1 -TTGCATTGCATCAT
80582266 TTGCATT
1 TTGCATT
80582273 AAATTTCCCA
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
14 24 0.53
15 7 0.16
16 2 0.04
17 2 0.04
18 7 0.16
19 3 0.07
ACGTcount: A:0.21, C:0.19, G:0.15, T:0.46
Consensus pattern (14 bp):
TTGCATTGCATCAT
Found at i:80584843 original size:15 final size:15
Alignment explanation
Indices: 80584806--80584855 Score: 57
Period size: 17 Copynumber: 3.3 Consensus size: 15
80584796 TGAGATATTC
* *
80584806 AAAAAAAAGAGAAAG
1 AAAAAGAAGAAAAAG
80584821 AAATAAAGAAGAAAAAG
1 -AA-AAAGAAGAAAAAG
80584838 AAAAAGAAG-AAAAG
1 AAAAAGAAGAAAAAG
80584852 AAAA
1 AAAA
80584856 GAAAAGGAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
14 9 0.29
15 7 0.23
16 4 0.13
17 11 0.35
ACGTcount: A:0.80, C:0.00, G:0.18, T:0.02
Consensus pattern (15 bp):
AAAAAGAAGAAAAAG
Found at i:80584843 original size:23 final size:23
Alignment explanation
Indices: 80584809--80584853 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
80584799 GATATTCAAA
*
80584809 AAAAAGAGAAAGAA-ATAAAGAAG
1 AAAAAGAAAAAGAAGA-AAAGAAG
80584832 AAAAAGAAAAAGAAGAAAAGAA
1 AAAAAGAAAAAGAAGAAAAGAA
80584854 AAGAAAAGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 19 0.95
24 1 0.05
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (23 bp):
AAAAAGAAAAAGAAGAAAAGAAG
Found at i:80586307 original size:132 final size:132
Alignment explanation
Indices: 80586070--80586379 Score: 521
Period size: 132 Copynumber: 2.3 Consensus size: 132
80586060 GGCCTATGAG
* *
80586070 GCTAAAATTTTAGATCTCGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAAACGGCGAATTTGAG
1 GCTAAAATTTCAGATCTCGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAAACGGCGAATCTGAG
*
80586135 CTTCCTGAAGTTGCAGTGAAGTAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGT
66 CTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGT
80586200 AA
131 AA
* * * *
80586202 GCTAAAATTTCAGATCTCGTTTCCCTGAAATTACAGTGAAGCAGATCGAAGATGGCGAATCTGAG
1 GCTAAAATTTCAGATCTCGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAAACGGCGAATCTGAG
* *
80586267 CTTCCTGAAGTTGTAGTGAAGCAGATTTAAGCCACCAACCTAGCTTCCTAAAGTTGTAGTGGAGT
66 CTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGT
*
80586332 AG
131 AA
*
80586334 GCTAAAATTTCAGATCTCGTTTCCCTTAAGTTGCAGTGAAGCAGAT
1 GCTAAAATTTCAGATCTCGTTTCCCTGAAGTTGCAGTGAAGCAGAT
80586380 TTAAGCCACC
Statistics
Matches: 165, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 165 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (132 bp):
GCTAAAATTTCAGATCTCGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAAACGGCGAATCTGAG
CTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGT
AA
Found at i:80586420 original size:87 final size:88
Alignment explanation
Indices: 80586274--80586467 Score: 336
Period size: 87 Copynumber: 2.2 Consensus size: 88
80586264 GAGCTTCCTG
* *
80586274 AAGTTGTAGTGAAGCAGATTTAAGCCACCAACCTAGCTTCCTAAAGTTGTAGTGGAGTAGGCTAA
1 AAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTAA
*
80586339 AATTTC-AGATCTCGTTTCCCTT
66 AATTTCAAGATCTCGTTTCCCTA
80586361 AAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTAA
1 AAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTAA
*
80586426 AATTTCAAGATCTTGTTTCCCTA
66 AATTTCAAGATCTCGTTTCCCTA
*
80586449 AAGTTGCAGTGAAACAGAT
1 AAGTTGCAGTGAAGCAGAT
80586468 CGAAGACGGC
Statistics
Matches: 101, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
87 69 0.68
88 32 0.32
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (88 bp):
AAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTAA
AATTTCAAGATCTCGTTTCCCTA
Found at i:80586448 original size:45 final size:44
Alignment explanation
Indices: 80586313--80586459 Score: 118
Period size: 44 Copynumber: 3.3 Consensus size: 44
80586303 AACCTAGCTT
* *
80586313 CCTAAAGTTGTAGTGGAGTAGGCTAAAATTTCAGATCTCGTTTC
1 CCTAAAGTTGCAGTGGAGTAGGCTAAAATTTCAGATCTAGTTTC
* * * ** ***** * *
80586357 CCTTAAGTTGCAGTGAAGCAGATTTAAGCCACCA-ACCTAG-CTC
1 CCTAAAGTTGCAGTGGAGTAG-GCTAAAATTTCAGATCTAGTTTC
* *
80586400 CCTAAAGTTGTAGTGGAGTAGGCTAAAATTTCAAGATCTTGTTTC
1 CCTAAAGTTGCAGTGGAGTAGGCTAAAATTTC-AGATCTAGTTTC
80586445 CCTAAAGTTGCAGTG
1 CCTAAAGTTGCAGTG
80586460 AAACAGATCG
Statistics
Matches: 70, Mismatches: 29, Indels: 7
0.66 0.27 0.07
Matches are distributed among these distances:
42 4 0.06
43 20 0.29
44 25 0.36
45 21 0.30
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.31
Consensus pattern (44 bp):
CCTAAAGTTGCAGTGGAGTAGGCTAAAATTTCAGATCTAGTTTC
Found at i:80586531 original size:133 final size:132
Alignment explanation
Indices: 80586361--80587478 Score: 1241
Period size: 133 Copynumber: 8.5 Consensus size: 132
80586351 CGTTTCCCTT
*
80586361 AAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCT-A
1 AAGTTGCAGTGAAGCAGATTTAAGCCA-CATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGA
* * *
80586425 AAATTTCAAGATCTTGTTTCCCTAAAGTTGCAGTGAAACAGATCGAAGACGGCGAATCTGAGCTT
65 AGATTT-AAGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTGAGCTT
*
80586490 CCTA
129 CCTG
* *
80586494 AAGTTGCAGTGAAGCAGACTTAAGCCACTATCCTAGCTCCCTAAGGTTGTAGTGGAGTAGGCTGA
1 AAGTTGCAGTGAAGCAGATTTAAGCCAC-ATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGA
*
80586559 AGA-TTATAGATCTCGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTGAGCTT
65 AGATTTA-AGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTGAGCTT
80586623 CCTG
129 CCTG
*
80586627 AAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCT-A
1 AAGTTGCAGTGAAGCAGATTTAAGCCA-CATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGA
* * *
80586691 AAATTTCAAGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCAAAGACGGTGAATCTGAGCTT
65 AGATTT-AAGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTGAGCTT
80586756 CCTG
129 CCTG
* * * *
80586760 AAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTTGCTTCTTAAAGTTGTAGTGGAGTAGGCT-A
1 AAGTTGCAGTGAAGCAGATTTAAGCCA-CATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGA
* * * *
80586824 AAATTTCAAGATCTTGTTTCCCTAAAGTTGCAGTGAAACAGATCGAAGATGGCGAATCTGAGCTT
65 AGATTT-AAGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTGAGCTT
80586889 CCTG
129 CCTG
* * *
80586893 AAGATGCAGCGAAGCAGATTTAAG---CATCCTAGCTCCCTAAGGTTGTAGTGGAGTAGGCTGAA
1 AAGTTGCAGTGAAGCAGATTTAAGCCACATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAA
* *
80586955 GA-TTATAGATCTTG-TTCCCTG-AGATTGCAATGGAGCAGATCGAAGACGGCGAATCT-AGGCT
66 GATTTA-AGATCTTGTTTCCCTGAAG-TTGCAGTGAAGCAGATCGAAGACGGCGAATCTGA-GCT
80587016 TCCTG
128 TCCTG
* * **
80587021 ATGTTGCA--GAAGCAGATTTAAG-CA-AGTCCTACCTCTATAAAGTTGTAGTGGAGTAGGCTGA
1 AAGTTGCAGTGAAGCAGATTTAAGCCACA-TCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGA
* * ** * * * ***
80587082 GGATTGT-AGATCTCGCCTCCCTGAAGTTGCAGTGAGGCAAATCAAAGACGATAAATCTTG-GCT
65 AGATT-TAAGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATC-TGAGCT
80587145 TCCTG
128 TCCTG
* * * *
80587150 AAGATGCAGCGAAGCAGATTTGAG---CATCCTAGCTCCCTAAGGTTGTAGTGGAGTAGGCTGAA
1 AAGTTGCAGTGAAGCAGATTTAAGCCACATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAA
** *
80587212 GA-TTATAGATCTTGTTTCCCTG-AGATTGCAGTGGGGCAGATCGAAAACGGCGAATCT-AGGCT
66 GATTTA-AGATCTTGTTTCCCTGAAG-TTGCAGTGAAGCAGATCGAAGACGGCGAATCTGA-GCT
80587274 TCCTG
128 TCCTG
* * * * *
80587279 ATGTTGCAGTAAAGCAGATTTAAG-CA-AGTTCTAACTCTCTAAAGTTGTAGTGGAGTAGGCTGA
1 AAGTTGCAGTGAAGCAGATTTAAGCCACA-TCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGA
* * * * * * ***
80587342 GGATTGT-AGATCTCGTCTCCCTGAAGTTGCAGTGAGGCAAATCAAAGACGATAAATCTTG-GCT
65 AGATT-TAAGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATC-TGAGCT
80587405 TCCTG
128 TCCTG
* * * * * *
80587410 AAGATGCTGTGAAGCAGATTTAAG-CA-AGTCCTAGCTCCCTAAAGTAGGTGGTGAAGTAAGCTG
1 AAGTTGCAGTGAAGCAGATTTAAGCCACA-TCCTAGCTCCCTAAAGT-TGTAGTGGAGTAGGCTG
80587473 AAGATT
64 AAGATT
80587479 GTAGGTCTTA
Statistics
Matches: 847, Mismatches: 102, Indels: 73
0.83 0.10 0.07
Matches are distributed among these distances:
126 14 0.02
127 5 0.01
128 93 0.11
129 181 0.21
130 9 0.01
131 130 0.15
132 27 0.03
133 383 0.45
134 5 0.01
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (132 bp):
AAGTTGCAGTGAAGCAGATTTAAGCCACATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAA
GATTTAAGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTGAGCTTCC
TG
Found at i:80586531 original size:220 final size:220
Alignment explanation
Indices: 80586138--80586600 Score: 743
Period size: 220 Copynumber: 2.1 Consensus size: 220
80586128 ATTTGAGCTT
*
80586138 CCTGAAGTTGCAGTGAAGTAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAAG
1 CCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAAG
* *
80586203 CTAAAATTTCAGATCTCGTTTCCCTGAAATTACAGTGAAGCAGATCGAAGATGGCGAATCTGAGC
66 CTAAAATTTCAGATCTCGTTTCCCTGAAATTACAGTGAAACAGATCGAAGACGGCGAATCTGAGC
* * * *
80586268 TTCCTGAAGTTGTAGTGAAGCAGATTTAAGCCACCAACCTAGCTTCCTAAAGTTGTAGTGGAGTA
131 TTCCTAAAGTTGCAGTGAAGCAGACTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTA
80586333 GGCT-AAAATT-TCAGATCTCGTTTC
196 GGCTGAAAATTAT-AGATCTCGTTTC
* *
80586357 CCTTAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGG
1 CCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAAG
* *
80586422 CTAAAATTTCAAGATCTTGTTTCCCT-AAAGTTGCAGTGAAACAGATCGAAGACGGCGAATCTGA
66 CTAAAATTTC-AGATCTCGTTTCCCTGAAA-TTACAGTGAAACAGATCGAAGACGGCGAATCTGA
* * *
80586486 GCTTCCTAAAGTTGCAGTGAAGCAGACTTAAGCCACTATCCTAGCTCCCTAAGGTTGTAGTGGAG
129 GCTTCCTAAAGTTGCAGTGAAGCAGACTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAG
*
80586551 TAGGCTGAAGATTATAGATCTCGTTTC
194 TAGGCTGAAAATTATAGATCTCGTTTC
80586578 CCTGAAGTTGCAGTGAAGCAGAT
1 CCTGAAGTTGCAGTGAAGCAGAT
80586601 CGAAGACGGC
Statistics
Matches: 224, Mismatches: 16, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
219 75 0.33
220 109 0.49
221 39 0.17
222 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (220 bp):
CCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAAG
CTAAAATTTCAGATCTCGTTTCCCTGAAATTACAGTGAAACAGATCGAAGACGGCGAATCTGAGC
TTCCTAAAGTTGCAGTGAAGCAGACTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTA
GGCTGAAAATTATAGATCTCGTTTC
Found at i:80586629 original size:45 final size:44
Alignment explanation
Indices: 80586578--80586916 Score: 164
Period size: 45 Copynumber: 7.6 Consensus size: 44
80586568 ATCTCGTTTC
*
80586578 CCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTGAGCTT
1 CCTGAAGTTGCAGTGAAGCAGATCTAAGACGGCGAATCT-AGCTT
* ** * * *
80586623 CCTGAAGTTGCAGTGAAGCAGATTTAAG-CCACCAACCTAGCTC
1 CCTGAAGTTGCAGTGAAGCAGATCTAAGACGGCGAATCTAGCTT
* * * * * * *** * * *
80586666 CCTAAAGTTGTAGTGGAGTAG-GCTAAAATTTCAAGATCTTGTTT
1 CCTGAAGTTGCAGTGAAGCAGATCTAAGACGGCGA-ATCTAGCTT
* *
80586710 CCCTGAAGTTGCAGTGAAGCAGATCAAAGACGGTGAATCTGAGCTT
1 -CCTGAAGTTGCAGTGAAGCAGATCTAAGACGGCGAATCT-AGCTT
* ** * * *
80586756 CCTGAAGTTGCAGTGAAGCAGATTTAAG-CCACCAACCTTGCTT
1 CCTGAAGTTGCAGTGAAGCAGATCTAAGACGGCGAATCTAGCTT
* * * * * * * *** * * *
80586799 CTTAAAGTTGTAGTGGAGTAG-GCTAAAATTTCAAGATCTTGTTT
1 CCTGAAGTTGCAGTGAAGCAGATCTAAGACGGCGA-ATCTAGCTT
* * * *
80586843 CCCTAAAGTTGCAGTGAAACAGATCGAAGATGGCGAATCTGAGCTT
1 -CCTGAAGTTGCAGTGAAGCAGATCTAAGACGGCGAATCT-AGCTT
* * *
80586889 CCTGAAGATGCAGCGAAGCAGATTTAAG
1 CCTGAAGTTGCAGTGAAGCAGATCTAAG
80586917 CATCCTAGCT
Statistics
Matches: 207, Mismatches: 77, Indels: 20
0.68 0.25 0.07
Matches are distributed among these distances:
42 6 0.03
43 45 0.22
44 23 0.11
45 115 0.56
46 18 0.09
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (44 bp):
CCTGAAGTTGCAGTGAAGCAGATCTAAGACGGCGAATCTAGCTT
Found at i:80586727 original size:88 final size:88
Alignment explanation
Indices: 80586270--80586733 Score: 350
Period size: 88 Copynumber: 5.3 Consensus size: 88
80586260 ATCTGAGCTT
* *
80586270 CCTGAAGTTGTAGTGAAGCAGATTTAAGCCACCAACCTAGCTTCCTAAAGTTGTAGTGGAGTAGG
1 CCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGG
*
80586335 CTAAAATTTC-AGATCTCGTTTC
66 CTAAAATTTCAAGATCTAGTTTC
*
80586357 CCTTAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGG
1 CCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGG
*
80586422 CTAAAATTTCAAGATCTTGTTTC
66 CTAAAATTTCAAGATCTAGTTTC
* * ** ** * * * * * *
80586445 CCTAAAGTTGCAGTGAAACAGATCGAAGACGGCGAATCTGAGCTTCCTAAAGTTGCAGTGAAGCA
1 CCTGAAGTTGCAGTGAAGCAGATTTAAG-CCACCAACCT-AGCTCCCTAAAGTTGTAGTGGAGTA
* * ** ** *
80586510 GACT-TAA-GCCACTATCCTAG-CTC
64 GGCTAAAATTTCAAGAT-CTAGTTTC
* * * ** * ** * * * * * * *
80586533 CCT-AAGGTTGTAGTGGAGTAGGCTGAAGATTA-TAGATCTCGTTTCCCTGAAGTTGCAGTGAAG
1 CCTGAA-GTTGCAGTGAAGCAGATTTAAG-CCACCA-ACCTAG-CTCCCTAAAGTTGTAGTGGAG
* * * * *** * *
80586596 CAGATCGAAGACGGCGA-ATCTGAGCTT-
62 TAG-GCTAAAATTTCAAGATCT-AGTTTC
80586623 CCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGG
1 CCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGG
*
80586688 CTAAAATTTCAAGATCTTGTTTC
66 CTAAAATTTCAAGATCTAGTTTC
80586711 CCTGAAGTTGCAGTGAAGCAGAT
1 CCTGAAGTTGCAGTGAAGCAGAT
80586734 CAAAGACGGT
Statistics
Matches: 289, Mismatches: 72, Indels: 31
0.74 0.18 0.08
Matches are distributed among these distances:
87 85 0.29
88 131 0.45
89 19 0.07
90 49 0.17
91 5 0.02
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (88 bp):
CCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGG
CTAAAATTTCAAGATCTAGTTTC
Found at i:80587737 original size:44 final size:44
Alignment explanation
Indices: 80587670--80588332 Score: 959
Period size: 44 Copynumber: 15.1 Consensus size: 44
80587660 GACCAGACAT
* * *
80587670 ATTTGGCGTCTCTGTAGTAGCGGAGAGCAAATCGAAGATAGCAG
1 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
*
80587714 ATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
1 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
* * * **
80587758 ATTTGGCGTCTCTATGTTGGCGGAGAGTAGATCGAAGATAATAG
1 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
* *
80587802 ATTTGGCATCTCTGTATTAGCGGAGAGCAGATCGAAGATAGCAG
1 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
*
80587846 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAGGATAGCAG
1 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
* *
80587890 ATTTGGCGTCTCTGTGTTGGCGGAGAGCAGATCGAAGATAGTAG
1 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
* *
80587934 ATTTGGCGTCTCTGTATTGGCGGAGAACAGATCGAAGATAGTAG
1 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
* * *
80587978 ATTTGGCATCTCTGTATTGGGGGAGAGCAGATCGAAGATAGTAG
1 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
* *
80588022 ATTTGGCGTCTCTATATTGGCGGAGAGCAGATCGATGATAGCAG
1 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
*
80588066 ATTTGGCGTCTCTGTCTTGGCGGAGAGCAGATCGAAGATAGCAG
1 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
* * *
80588110 ATTTGGCGTCTCTGTGTTGGCGAAGAGCAGATCGAAGATAGTAG
1 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
* *
80588154 ATTTGGCGTCTCTGTATTGGCGGAGAGCAAATCGAGGATAGCAG
1 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
* * *
80588198 ATTTGGCGTCTCTGTGTTGGCAGAGAGCAGATCGAAGATAGTAG
1 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
* *
80588242 ATTTGGCGTTTATGTATTGGCGGAGAGCAGATCGAAGAT-GACAG
1 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG-CAG
* * * * * * *
80588286 ATTTGGTGTATCTATATTGGCAGAGAGCAGATTGAAAATAACAG
1 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
80588330 ATT
1 ATT
80588333 GGTGTTCTCG
Statistics
Matches: 555, Mismatches: 62, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
43 1 0.00
44 554 1.00
ACGTcount: A:0.27, C:0.14, G:0.33, T:0.27
Consensus pattern (44 bp):
ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
Found at i:80590765 original size:130 final size:128
Alignment explanation
Indices: 80590599--80591086 Score: 576
Period size: 130 Copynumber: 3.8 Consensus size: 128
80590589 AAATTCTTCA
* * * *
80590599 AAACGAAGACGAAATTTAATGTTCGGCAATTTGCGGAATCGTGCCCTAACGTGTTGGGTTGCAAT
1 AAACGAAGACGAGATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAAT
* *
80590664 TTCGTATTTGCTCAAAATAATCAAATTTCCCTTCGAAATTCTATTCATTTCTTTTAAAATCCCTT
66 TTCGCATTTGCTCAAAATAATCAAATATCCCTTCGAAATTC--TTCATTTCTTTTAAAATCCCTT
*
80590729 AAACGAAGATGAGATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAAT
1 AAACGAAGACGAGATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAAT
* * *
80590794 TTCGCATTTGCTTAAAATAATCAAATTTCCCTTCGAAATTC--CA-TTC--ATAAAATCCCTT
66 TTCGCATTTGCTCAAAATAATCAAATATCCCTTCGAAATTCTTCATTTCTTTTAAAATCCCTT
* *
80590852 AAACGAAGATGAGATTTGATGTTTGGCAATTCGCAGAATCGTGCCCTAACGTGTTGGGTTGCAAT
1 AAACGAAGACGAGATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAAT
* * * * * * * *
80590917 TTCGCATTTGATCAAAATAATCGAATATCACTTTGAAATTTCGCTCGTGTCTTTTAAAATCCCTA
66 TTCGCATTTGCTCAAAATAATCAAATATCCCTTCGAAA-TTC-TTCATTTCTTTTAAAATCCCTT
* * * * * * * * *
80590982 AAACGAAGGCGATATTCGGTATTTGGCAATTTGTGGGATCGTGCCCTAACGTGTTGGGTAGCAAT
1 AAACGAAGACGAGATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAAT
* * * *
80591047 TCCTCG-A-TTGTTTAAAATAATCAAATATCTCTTCAAAATT
66 T--TCGCATTTGCTCAAAATAATCAAATATCCCTTCGAAATT
80591087 TCACTCGGCT
Statistics
Matches: 313, Mismatches: 36, Indels: 19
0.85 0.10 0.05
Matches are distributed among these distances:
123 107 0.34
124 3 0.01
125 3 0.01
126 2 0.01
127 1 0.00
128 2 0.01
129 2 0.01
130 189 0.60
131 1 0.00
132 3 0.01
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.34
Consensus pattern (128 bp):
AAACGAAGACGAGATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAAT
TTCGCATTTGCTCAAAATAATCAAATATCCCTTCGAAATTCTTCATTTCTTTTAAAATCCCTT
Found at i:80591064 original size:253 final size:253
Alignment explanation
Indices: 80590599--80591086 Score: 649
Period size: 253 Copynumber: 1.9 Consensus size: 253
80590589 AAATTCTTCA
* *
80590599 AAACGAAGACGAAATTTAATGTTCGGCAATTTGCGGAATCGTGCCCTAACGTGTTGGGTTGCAAT
1 AAACGAAGACGAAATTTAATGTTCGGCAATTCGCAGAATCGTGCCCTAACGTGTTGGGTTGCAAT
* * * * * * *
80590664 TTCGTATTTGCTCAAAATAATCAAATTTCCCTTCGAAATTCTATTCATTTCTTTTAAAATCCCTT
66 TTCGCATTTGATCAAAATAATCAAATATCACTTCGAAATTCTACTCATGTCTTTTAAAATCCCTA
* * * *
80590729 AAACGAAGATGAGATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAAT
131 AAACGAAGACGAGATTCGATATTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTAGCAAT
* *
80590794 TTCGCATTTGCTTAAAATAATCAAATTTCCCTTCGAAATTCCATTCATAAAATCCCTT
196 TTCGCATTTGCTTAAAATAATCAAATATCCCTTCAAAATTCCATTCATAAAATCCCTT
* * * *
80590852 AAACGAAGATGAGATTTGATGTTTGGCAATTCGCAGAATCGTGCCCTAACGTGTTGGGTTGCAAT
1 AAACGAAGACGAAATTTAATGTTCGGCAATTCGCAGAATCGTGCCCTAACGTGTTGGGTTGCAAT
* * * *
80590917 TTCGCATTTGATCAAAATAATCGAATATCACTTTGAAATT-TCGCTCGTGTCTTTTAAAATCCCT
66 TTCGCATTTGATCAAAATAATCAAATATCACTTCGAAATTCT-ACTCATGTCTTTTAAAATCCCT
* * * * * *
80590981 AAAACGAAGGCGATATTCGGTATTTGGCAATTTGTGGGATCGTGCCCTAACGTGTTGGGTAGCAA
130 AAAACGAAGACGAGATTCGATATTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTAGCAA
* *
80591046 TTCCTCG-A-TTGTTTAAAATAATCAAATATCTCTTCAAAATT
195 TT--TCGCATTTGCTTAAAATAATCAAATATCCCTTCAAAATT
80591087 TCACTCGGCT
Statistics
Matches: 201, Mismatches: 31, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
252 1 0.00
253 196 0.98
254 1 0.00
255 3 0.01
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.34
Consensus pattern (253 bp):
AAACGAAGACGAAATTTAATGTTCGGCAATTCGCAGAATCGTGCCCTAACGTGTTGGGTTGCAAT
TTCGCATTTGATCAAAATAATCAAATATCACTTCGAAATTCTACTCATGTCTTTTAAAATCCCTA
AAACGAAGACGAGATTCGATATTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTAGCAAT
TTCGCATTTGCTTAAAATAATCAAATATCCCTTCAAAATTCCATTCATAAAATCCCTT
Found at i:80593587 original size:20 final size:19
Alignment explanation
Indices: 80593557--80593602 Score: 65
Period size: 20 Copynumber: 2.4 Consensus size: 19
80593547 AAATTGATTG
*
80593557 AAAAGAAAATTGAAAAATA
1 AAAAAAAAATTGAAAAATA
*
80593576 AAGAAAAAAATTGAAAATTA
1 AA-AAAAAAATTGAAAAATA
80593596 AAAAAAA
1 AAAAAAA
80593603 TGGTTCAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 7 0.29
20 17 0.71
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.15
Consensus pattern (19 bp):
AAAAAAAAATTGAAAAATA
Found at i:80599741 original size:31 final size:29
Alignment explanation
Indices: 80599703--80599772 Score: 86
Period size: 29 Copynumber: 2.3 Consensus size: 29
80599693 ACTATCAAAA
**
80599703 TAGTCACTTTTGTTTAGCTTAGGTTACATTT
1 TAGTCACTTTTGTTT-G-AAAGGTTACATTT
* *
80599734 TAGTCACTTATGTTTGAAATGTTACATTT
1 TAGTCACTTTTGTTTGAAAGGTTACATTT
80599763 TAGTCACTTT
1 TAGTCACTTT
80599773 CGTTATCACG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
29 19 0.56
30 1 0.03
31 14 0.41
ACGTcount: A:0.23, C:0.13, G:0.14, T:0.50
Consensus pattern (29 bp):
TAGTCACTTTTGTTTGAAAGGTTACATTT
Found at i:80601994 original size:16 final size:16
Alignment explanation
Indices: 80601962--80602002 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
80601952 GTATTATATG
80601962 ATTA-AATA-TAAATA
1 ATTATAATATTAAATA
80601976 ATTAATAATATTAAA-A
1 ATT-ATAATATTAAATA
80601992 ATTATAATATT
1 ATTATAATATT
80602003 TTATATTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 3 0.12
15 9 0.38
16 8 0.33
17 4 0.17
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
ATTATAATATTAAATA
Found at i:80601996 original size:38 final size:39
Alignment explanation
Indices: 80601954--80602029 Score: 93
Period size: 38 Copynumber: 2.0 Consensus size: 39
80601944 TTAATAATGT
80601954 ATTAT-ATGATTAAATATAAATAA-TTAATAATATTAAAA
1 ATTATAAT-ATTAAATATAAATAATTTAATAATATTAAAA
** * *
80601992 ATTATAATATTTTATATTAATAATTTAATAATCTTAAA
1 ATTATAATATTAAATATAAATAATTTAATAATATTAAA
80602030 TATTTTTAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
38 17 0.53
39 15 0.47
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.45
Consensus pattern (39 bp):
ATTATAATATTAAATATAAATAATTTAATAATATTAAAA
Found at i:80603242 original size:31 final size:31
Alignment explanation
Indices: 80603176--80603240 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
80603166 TGGCTTTATG
* **
80603176 AAATTATAAAAATTTGGTTTAAATTTTTTAA
1 AAATTATAAAAATTAGGTTTAAATAATTTAA
80603207 AAATTATAAAAATATAGGTTATAAA-AATTTAA
1 AAATTATAAAAAT-TAGGTT-TAAATAATTTAA
80603239 AA
1 AA
80603241 TTCTATTTGT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
31 13 0.45
32 12 0.41
33 4 0.14
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (31 bp):
AAATTATAAAAATTAGGTTTAAATAATTTAA
Found at i:80604489 original size:16 final size:16
Alignment explanation
Indices: 80604470--80604545 Score: 59
Period size: 16 Copynumber: 4.8 Consensus size: 16
80604460 AATTATATAA
80604470 ATTATATTAATAATAT
1 ATTATATTAATAATAT
* *
80604486 ATTATATGATTAA-AT
1 ATTATATTAATAATAT
80604501 ATTAATAATTAATAATAT
1 ATT-AT-ATTAATAATAT
* *
80604519 -TAAAAATT-ATAATAT
1 AT-TATATTAATAATAT
*
80604534 TTTATATTAATA
1 ATTATATTAATA
80604546 TTTTAATAAT
Statistics
Matches: 46, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
15 16 0.35
16 20 0.43
17 8 0.17
18 2 0.04
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.47
Consensus pattern (16 bp):
ATTATATTAATAATAT
Found at i:80604509 original size:26 final size:25
Alignment explanation
Indices: 80604473--80604555 Score: 86
Period size: 22 Copynumber: 3.4 Consensus size: 25
80604463 TATATAAATT
80604473 ATATTAATAATATATTATATGATTAA
1 ATATTAATAATATATTATAT-ATTAA
*
80604499 ATATTAATAAT-TAATA-ATATTAA
1 ATATTAATAATATATTATATATTAA
*
80604522 AAATT-ATAATAT-TT-TATATTAA
1 ATATTAATAATATATTATATATTAA
*
80604544 TATTTTAATAAT
1 -ATATTAATAAT
80604556 TATAAAAATA
Statistics
Matches: 48, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
22 13 0.27
23 13 0.27
24 7 0.15
25 4 0.08
26 11 0.23
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (25 bp):
ATATTAATAATATATTATATATTAA
Found at i:80604528 original size:38 final size:39
Alignment explanation
Indices: 80604486--80604564 Score: 92
Period size: 38 Copynumber: 2.1 Consensus size: 39
80604476 TTAATAATAT
80604486 ATTAT-ATGATTAAATATTAATA-ATTAATAA-TATTAAAA
1 ATTATAAT-ATTAAATATTAATATATTAATAATTA-TAAAA
** *
80604524 ATTATAATATTTTATATTAATATTTTAATAATTATAAAA
1 ATTATAATATTAAATATTAATATATTAATAATTATAAAA
80604563 AT
1 AT
80604565 AAAAATAAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
38 17 0.49
39 16 0.46
40 2 0.06
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.47
Consensus pattern (39 bp):
ATTATAATATTAAATATTAATATATTAATAATTATAAAA
Found at i:80604555 original size:46 final size:47
Alignment explanation
Indices: 80604479--80604570 Score: 118
Period size: 45 Copynumber: 2.0 Consensus size: 47
80604469 AATTATATTA
* *
80604479 ATAATATATTATATGATTAAATATTAATAATTAATAATATTAAAAATT
1 ATAATATATTATATGATTAAATATTAATAATT-ATAAAAATAAAAATT
*
80604527 ATAATAT-TT-TAT-ATTAATATTTTAATAATTATAAAAATAAAAAT
1 ATAATATATTATATGATTAA-ATATTAATAATTATAAAAATAAAAAT
80604571 AAATTTTATT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
45 17 0.43
46 14 0.35
47 2 0.05
48 7 0.17
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.45
Consensus pattern (47 bp):
ATAATATATTATATGATTAAATATTAATAATTATAAAAATAAAAATT
Found at i:80605494 original size:28 final size:29
Alignment explanation
Indices: 80605449--80605525 Score: 108
Period size: 28 Copynumber: 2.8 Consensus size: 29
80605439 TTTTTAAATT
80605449 TACAATT-AAAAATATAATAATGTTAGGC
1 TACAATTAAAAAATATAATAATGTTAGGC
80605477 -ACAATTAAAAAATATAATAATGTTAGGC
1 TACAATTAAAAAATATAATAATGTTAGGC
* *
80605505 TTC-ATTAAAATA-ATAATAATG
1 TACAATTAAAAAATATAATAATG
80605526 AACAGTCGGT
Statistics
Matches: 45, Mismatches: 2, Indels: 5
0.87 0.04 0.10
Matches are distributed among these distances:
27 15 0.33
28 29 0.64
29 1 0.02
ACGTcount: A:0.52, C:0.06, G:0.09, T:0.32
Consensus pattern (29 bp):
TACAATTAAAAAATATAATAATGTTAGGC
Found at i:80605621 original size:17 final size:17
Alignment explanation
Indices: 80605601--80605650 Score: 68
Period size: 17 Copynumber: 2.9 Consensus size: 17
80605591 TTATATTACA
80605601 AAATATTTATTATTAAT
1 AAATATTTATTATTAAT
80605618 AAAT-TTATAATT-TTAAT
1 AAATATT-T-ATTATTAAT
80605635 AAATATTTATTATTAA
1 AAATATTTATTATTAA
80605651 AATATTAATC
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
16 5 0.17
17 19 0.66
18 5 0.17
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (17 bp):
AAATATTTATTATTAAT
Found at i:80605655 original size:15 final size:15
Alignment explanation
Indices: 80605600--80605656 Score: 53
Period size: 15 Copynumber: 3.5 Consensus size: 15
80605590 TTTATATTAC
80605600 AAAATATTTATTATT
1 AAAATATTTATTATT
*
80605615 AATAA-ATTTATAATTTT
1 AA-AATATTTAT--TATT
80605632 AATAAATATTTATTATT
1 -A-AAATATTTATTATT
80605649 AAAATATT
1 AAAATATT
80605657 AATCTTGAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 12
0.71 0.04 0.25
Matches are distributed among these distances:
15 15 0.44
16 3 0.09
17 6 0.18
18 3 0.09
19 7 0.21
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
AAAATATTTATTATT
Found at i:80605715 original size:15 final size:16
Alignment explanation
Indices: 80605695--80605725 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
80605685 AGAATAATTA
80605695 TTTAAAA-TTATTATT
1 TTTAAAATTTATTATT
80605710 TTTAAAATTTATTATT
1 TTTAAAATTTATTATT
80605726 AAAATAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TTTAAAATTTATTATT
Found at i:80605847 original size:22 final size:23
Alignment explanation
Indices: 80605808--80605850 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
80605798 AATTTAAATA
* *
80605808 ATTAAATATGTATGTTTAATAAT
1 ATTAAAAATGTATATTTAATAAT
80605831 ATTAAAAAT-TATATTTAATA
1 ATTAAAAATGTATATTTAATA
80605851 TTTTAAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.47
Consensus pattern (23 bp):
ATTAAAAATGTATATTTAATAAT
Found at i:80609481 original size:20 final size:20
Alignment explanation
Indices: 80609435--80609484 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
80609425 ACCAAAAAAT
*
80609435 AAAAATAAAATAATAATGAC
1 AAAAATAAAATAAAAATGAC
* *
80609455 GATAATAAAATAAAAAATG-C
1 AAAAATAAAAT-AAAAATGAC
80609475 AAAAATAAAA
1 AAAAATAAAA
80609485 GCATATATAT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
20 18 0.75
21 6 0.25
ACGTcount: A:0.72, C:0.04, G:0.06, T:0.18
Consensus pattern (20 bp):
AAAAATAAAATAAAAATGAC
Found at i:80613474 original size:5 final size:5
Alignment explanation
Indices: 80613464--80613496 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
80613454 GATAGTGAGA
80613464 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
80613497 GAACACACAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:80617930 original size:5 final size:5
Alignment explanation
Indices: 80617920--80617962 Score: 86
Period size: 5 Copynumber: 8.6 Consensus size: 5
80617910 TAATTTGAGA
80617920 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
80617963 GAACGCACAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 38 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:80618938 original size:61 final size:61
Alignment explanation
Indices: 80618831--80618951 Score: 154
Period size: 61 Copynumber: 2.0 Consensus size: 61
80618821 GCCCGCATGC
* * * *
80618831 CCGTGTGGCCCACATGGCCCAAATAGCCTAACCCGTATGACCCACACGGCCTCACACATAT
1 CCGTGTGGCCCACATGACCCAAATAGCCCAACCCGTATGACACACACAGCCTCACACATAT
* * * *
80618892 CCGTGTGGTCCACATGACCCAAATAGCCCATA-CCGTGTGTCACACACAGCCTGACACATA
1 CCGTGTGGCCCACATGACCCAAATAGCCCA-ACCCGTATGACACACACAGCCTCACACATA
80618952 GGCGTGCAGT
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
61 50 0.98
62 1 0.02
ACGTcount: A:0.27, C:0.37, G:0.18, T:0.17
Consensus pattern (61 bp):
CCGTGTGGCCCACATGACCCAAATAGCCCAACCCGTATGACACACACAGCCTCACACATAT
Found at i:80619973 original size:13 final size:13
Alignment explanation
Indices: 80619955--80620000 Score: 85
Period size: 13 Copynumber: 3.6 Consensus size: 13
80619945 ATAGTTTAAT
80619955 AATAAAATAAAGA
1 AATAAAATAAAGA
80619968 AATAAAATAAAGA
1 AATAAAATAAAGA
80619981 AATAAAATAAAGA
1 AATAAAATAAAGA
80619994 AA-AAAAT
1 AATAAAAT
80620001 GAAATAAAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
12 5 0.15
13 28 0.85
ACGTcount: A:0.78, C:0.00, G:0.07, T:0.15
Consensus pattern (13 bp):
AATAAAATAAAGA
Found at i:80620009 original size:13 final size:12
Alignment explanation
Indices: 80619958--80620014 Score: 69
Period size: 13 Copynumber: 4.4 Consensus size: 12
80619948 GTTTAATAAT
80619958 AAAATAAAGAAA
1 AAAATAAAGAAA
80619970 TAAAATAAAGAAA
1 -AAAATAAAGAAA
80619983 TAAAATAAAGAAA
1 -AAAATAAAGAAA
*
80619996 AAAATGAAATAAA
1 AAAAT-AAAGAAA
80620009 AGAAAT
1 A-AAAT
80620015 GAAAAAGAAA
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
12 5 0.12
13 32 0.78
14 4 0.10
ACGTcount: A:0.77, C:0.00, G:0.09, T:0.14
Consensus pattern (12 bp):
AAAATAAAGAAA
Found at i:80620040 original size:22 final size:23
Alignment explanation
Indices: 80620007--80620050 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
80619997 AAATGAAATA
*
80620007 AAAGAAATGAAA-A-AGAAAAAG
1 AAAGAAACGAAACAGAGAAAAAG
80620028 AAAGCAAACGAAACAGAGAAAAA
1 AAAG-AAACGAAACAGAGAAAAA
80620051 CACGGGAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 4 0.21
22 7 0.37
23 1 0.05
24 7 0.37
ACGTcount: A:0.73, C:0.07, G:0.18, T:0.02
Consensus pattern (23 bp):
AAAGAAACGAAACAGAGAAAAAG
Found at i:80621313 original size:15 final size:15
Alignment explanation
Indices: 80621287--80621334 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
80621277 TATCAAATTT
*
80621287 ATATTAATTGAAATC
1 ATATTGATTGAAATC
* * *
80621302 ATTTTGATTGAATTT
1 ATATTGATTGAAATC
80621317 ATATTGATTGAAAT-
1 ATATTGATTGAAATC
80621331 ATAT
1 ATAT
80621335 ATTATATATA
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
14 4 0.15
15 23 0.85
ACGTcount: A:0.40, C:0.02, G:0.10, T:0.48
Consensus pattern (15 bp):
ATATTGATTGAAATC
Found at i:80621952 original size:18 final size:19
Alignment explanation
Indices: 80621931--80621971 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
80621921 AATGAAATGA
80621931 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
80621949 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
80621968 GAAA
1 GAAA
80621972 CATGAACCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:80622858 original size:19 final size:19
Alignment explanation
Indices: 80622834--80622907 Score: 132
Period size: 19 Copynumber: 3.9 Consensus size: 19
80622824 ATAATCTTCA
80622834 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
80622853 ATGATATGTAATCTTAGAT
1 ATGATATGCAATCTTAGAT
80622872 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
80622890 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
80622908 AGATATGATT
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
18 17 0.33
19 35 0.67
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.38
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:80622881 original size:37 final size:38
Alignment explanation
Indices: 80622834--80622914 Score: 132
Period size: 37 Copynumber: 2.2 Consensus size: 38
80622824 ATAATCTTCA
*
80622834 ATGATATGCAATCTTAGATATGATATGTAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
80622872 ATGAT-TGCAATCTTAGATATGATATGCAATCTTAGA-
1 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
80622908 A-GATATG
1 ATGATATG
80622915 ATTTTGTAAT
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
35 3 0.07
36 3 0.07
37 30 0.73
38 5 0.12
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.37
Consensus pattern (38 bp):
ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:80622929 original size:23 final size:22
Alignment explanation
Indices: 80622834--80622930 Score: 88
Period size: 19 Copynumber: 4.8 Consensus size: 22
80622824 ATAATCTTCA
80622834 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
*
80622853 ATGATATGTAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
80622872 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
80622890 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
80622912 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
80622931 GATTTAATTT
Statistics
Matches: 69, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
18 17 0.25
19 32 0.46
22 8 0.12
23 12 0.17
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.39
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:80624058 original size:19 final size:19
Alignment explanation
Indices: 80624031--80624068 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
80624021 TGTCTAAAAC
80624031 TTTTCTAAATAACTTTTAA
1 TTTTCTAAATAACTTTTAA
*
80624050 TTTTTTAAATAACTTTTAA
1 TTTTCTAAATAACTTTTAA
80624069 GTCATGTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.37, C:0.08, G:0.00, T:0.55
Consensus pattern (19 bp):
TTTTCTAAATAACTTTTAA
Found at i:80631155 original size:15 final size:16
Alignment explanation
Indices: 80631135--80631165 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
80631125 AAGAATATCA
80631135 TTTAAAA-TTATTATT
1 TTTAAAATTTATTATT
80631150 TTTAAAATTTATTATT
1 TTTAAAATTTATTATT
80631166 AAAATATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TTTAAAATTTATTATT
Found at i:80631161 original size:13 final size:14
Alignment explanation
Indices: 80631135--80631172 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
80631125 AAGAATATCA
80631135 TTTAAAATTATTATT
1 TTTAAAA-TATTATT
80631150 TTTAAAAT-TTATT
1 TTTAAAATATTATT
*
80631163 ATTAAAATAT
1 TTTAAAATAT
80631173 AATTAAAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
13 12 0.57
14 2 0.10
15 7 0.33
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
TTTAAAATATTATT
Found at i:80631304 original size:22 final size:22
Alignment explanation
Indices: 80631279--80631322 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
80631269 TATGTTTATA
80631279 ATATTAAAATTTATAATATTTT
1 ATATTAAAATTTATAATATTTT
* *
80631301 ATATTAATATTTTTAATATTTT
1 ATATTAAAATTTATAATATTTT
80631323 TAAAAATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (22 bp):
ATATTAAAATTTATAATATTTT
Found at i:80635701 original size:21 final size:21
Alignment explanation
Indices: 80635675--80635715 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
80635665 ATCTGCTCAA
* *
80635675 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
80635696 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
80635716 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:80640078 original size:31 final size:31
Alignment explanation
Indices: 80640040--80641060 Score: 569
Period size: 31 Copynumber: 34.5 Consensus size: 31
80640030 GAAGTTCGTA
80640040 TTCAGAACAAGACAACATCGAAGTGTGTATT
1 TTCAGAACAAGACAACATCGAAGTGTGTATT
* * * *
80640071 TTCAGAACAGGAAAACATTGAAATGTGTA-T
1 TTCAGAACAAGACAACATCGAAGTGTGTATT
* * **
80640101 TT-AGAGA-AGGACAATATCGAAGTGCATATT
1 TTCAGA-ACAAGACAACATCGAAGTGTGTATT
* * * * *
80640131 TTCAAAATATGACAACACCGAAATGTGTATT
1 TTCAGAACAAGACAACATCGAAGTGTGTATT
* * * * *
80640162 TT-TGAAACAAGACAACACCAAAATGCGTATT
1 TTCAG-AACAAGACAACATCGAAGTGTGTATT
* * * * *
80640193 TTCAAAATAGGACAACACCAAAGTGTGTATT
1 TTCAGAACAAGACAACATCGAAGTGTGTATT
* *
80640224 TTCAGAACAAGACAACATTGAAGTGCGTA--
1 TTCAGAACAAGACAACATCGAAGTGTGTATT
*
80640253 TTCAGAACAAGACAACATCGAAGTGCGTATT
1 TTCAGAACAAGACAACATCGAAGTGTGTATT
* *
80640284 TTCAGAAGAGGACAACATCGAAGTGTGTATT
1 TTCAGAACAAGACAACATCGAAGTGTGTATT
* * *
80640315 TTTAGAA-TAG-C-AC--CGAAGTGCGTA--
1 TTCAGAACAAGACAACATCGAAGTGTGTATT
* * * * *
80640339 TTCAGAACAGGACAGCATCAAAATGCGTATT
1 TTCAGAACAAGACAACATCGAAGTGTGTATT
* * * * *
80640370 TTTAAAATAGGACAACA-CTAAAGTGTGTATT
1 TTCAGAACAAGACAACATC-GAAGTGTGTATT
* *
80640401 TTCAGAACAAGACAACATTGAAGTGCGTA--
1 TTCAGAACAAGACAACATCGAAGTGTGTATT
* *
80640430 TTCAAAACAAGACGACATCGAAGTGTGTATT
1 TTCAGAACAAGACAACATCGAAGTGTGTATT
* * *
80640461 TTTAGAAGAGGACAACATCGAAGTGTGTATT
1 TTCAGAACAAGACAACATCGAAGTGTGTATT
* *
80640492 TTTAGAAC-A-AC-AC--CGAAGTGCGTA--
1 TTCAGAACAAGACAACATCGAAGTGTGTATT
* * * * *
80640516 TTCAGAACAGGACAGCACCGAAATGCGTATT
1 TTCAGAACAAGACAACATCGAAGTGTGTATT
* * * * *
80640547 TTTAAAATAGGGCAACA-CTGAAGTGTGTATT
1 TTCAGAACAAGACAACATC-GAAGTGTGTATT
* **
80640578 TTCAGAACAAGACAACA-CTGAAATACGTA--
1 TTCAGAACAAGACAACATC-GAAGTGTGTATT
*
80640607 TTCAGAACAAGACAACATCGAAGTGCGTATT
1 TTCAGAACAAGACAACATCGAAGTGTGTATT
* * *
80640638 TTTAGAAGAGGACAACATCGAAGTGTGTATT
1 TTCAGAACAAGACAACATCGAAGTGTGTATT
*
80640669 TTTAGAAC-A-AC-AC--CGAAGTGTGTA--
1 TTCAGAACAAGACAACATCGAAGTGTGTATT
* * *
80640693 TTCAGAACAAGACAGCA-CTGAAGTTTATATT
1 TTCAGAACAAGACAACATC-GAAGTGTGTATT
* * *
80640724 TTCAAAATAGGACAACATCGAAGTGTGTATT
1 TTCAGAACAAGACAACATCGAAGTGTGTATT
*
80640755 TCCAGAACAAGACAACA-CTGAAGTGTGTA--
1 TTCAGAACAAGACAACATC-GAAGTGTGTATT
*
80640784 TTC-GAAACAAGACAACATCGAAGAGTGTATT
1 TTCAG-AACAAGACAACATCGAAGTGTGTATT
* * * *
80640815 TTTAGAAC-A-AC-AC--CGAA--GCGCATA
1 TTCAGAACAAGACAACATCGAAGTGTGTATT
* * **
80640839 TTCAGAACAGGACAGCGCCGAAGT-TCGTATT
1 TTCAGAACAAGACAACATCGAAGTGT-GTATT
* * * * *
80640870 TTCAAAATAGGACAACACCGAAGT-TCATATT
1 TTCAGAACAAGACAACATCGAAGTGT-GTATT
* * *
80640901 TTCA-AATTAGGACAACACCGAAGTGTGTATT
1 TTCAGAA-CAAGACAACATCGAAGTGTGTATT
* * * *
80640932 TTTAGGATAAGACAACA-CTGAAGTGCGTA--
1 TTCAGAACAAGACAACATC-GAAGTGTGTATT
*
80640961 TTCAGAACAAGACAACATCAAAGTGTGTATAT
1 TTCAGAACAAGACAACATCGAAGTGTGTAT-T
* *
80640993 TT-AGAAC-A-AC-AC-T-AAAGTGCGTA--
1 TTCAGAACAAGACAACATCGAAGTGTGTATT
* * *
80641016 TTCAGAACAAAACAACACCGAAGTGCGTATT
1 TTCAGAACAAGACAACATCGAAGTGTGTATT
* *
80641047 TTCAAAATAAGACA
1 TTCAGAACAAGACA
80641061 GTACTGAACT
Statistics
Matches: 773, Mismatches: 149, Indels: 136
0.73 0.14 0.13
Matches are distributed among these distances:
23 2 0.00
24 36 0.05
25 3 0.00
26 53 0.07
27 7 0.01
28 12 0.02
29 190 0.25
30 20 0.03
31 444 0.57
32 6 0.01
ACGTcount: A:0.40, C:0.16, G:0.19, T:0.24
Consensus pattern (31 bp):
TTCAGAACAAGACAACATCGAAGTGTGTATT
Found at i:80640131 original size:60 final size:60
Alignment explanation
Indices: 80640050--80640308 Score: 159
Period size: 60 Copynumber: 4.2 Consensus size: 60
80640040 TTCAGAACAA
** * **
80640050 GACAACATCGAAGTGTGTATTTTCAGAACAGGAAAACATTGAAATGTGTATTTAGAGAAG
1 GACAACATCGAAGTGCATATTTTCAAAACAGGAAAACACCGAAATGTGTATTTAGAGAAG
* * * * * * *
80640110 GACAATATCGAAGTGCATATTTTCAAAATATGACAACACCGAAATGTGTATTTTTGAAACAA
1 GACAACATCGAAGTGCATATTTTCAAAACAGGAAAACACCGAAATGTGTA-TTTAGAGA-AG
* * * * * * *
80640172 GACAACACCAAAATGCGTATTTTCAAAATAGGACAACACC-AAAGTGTGTATTTTCAGA-ACAA
1 GACAACATCGAAGTGCATATTTTCAAAACAGGAAAACACCGAAA-TGTGTA-TTT-AGAGA-AG
* * * * * * * *
80640234 GACAACATTGAAGTGCGTA--TTCAGAACAAGACAACATCGAAGTGCGTATTTTCAGA-AGAG
1 GACAACATCGAAGTGCATATTTTCAAAACAGGAAAACACCGAAATGTGTA-TTT-AGAGA-AG
80640294 GACAACATCGAAGTG
1 GACAACATCGAAGTG
80640309 TGTATTTTTA
Statistics
Matches: 162, Mismatches: 32, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
60 85 0.52
61 11 0.07
62 64 0.40
63 2 0.01
ACGTcount: A:0.41, C:0.15, G:0.19, T:0.24
Consensus pattern (60 bp):
GACAACATCGAAGTGCATATTTTCAAAACAGGAAAACACCGAAATGTGTATTTAGAGAAG
Found at i:80640382 original size:86 final size:90
Alignment explanation
Indices: 80640014--80640979 Score: 734
Period size: 91 Copynumber: 10.8 Consensus size: 90
80640004 GCGCTATGTC
* * *
80640014 AAAAGAGGACAACACCGAAGT-TCGTA--TTCAGAACAAGACAACATCGAAGTGTGTATTTTCAG
1 AAAATAGGACAACATCGAAGTGT-GTATTTTCAGAACAAGACAACA-CGAAGTGCGTA--TTCAG
* * * * *
80640076 AACAGGAAAACATTGAAATGTGTA--TTT
62 AACAAGACAGCATCGAAATGCGTATTTTT
* * ** * * * * * **
80640103 AGAGA-AGGACAATATCGAAGTGCATATTTTCAAAATATGACAACACCGAAATGTGTATTTTTGA
1 A-AAATAGGACAACATCGAAGTGTGTATTTTCAGAACAAGACAACA-CGAAGTGCGTA-TTCAG-
* * * *
80640167 AACAAGACAACACCAAAATGCGTATTTTC
62 AACAAGACAGCATCGAAATGCGTATTTTT
* * *
80640196 AAAATAGGACAACACCAAAGTGTGTATTTTCAGAACAAGACAACATTGAAGTGCGTATTCAGAAC
1 AAAATAGGACAACATCGAAGTGTGTATTTTCAGAACAAGACAACA-CGAAGTGCGTATTCAGAAC
* * *
80640261 AAGACAACATCGAAGTGCGTATTTTC
65 AAGACAGCATCGAAATGCGTATTTTT
* * * *
80640287 AGAAGAGGACAACATCGAAGTGTGTATTTTTAGAA-TAG-C-AC-CGAAGTGCGTATTCAGAACA
1 AAAATAGGACAACATCGAAGTGTGTATTTTCAGAACAAGACAACACGAAGTGCGTATTCAGAACA
* *
80640348 GGACAGCATCAAAATGCGTATTTTT
66 AGACAGCATCGAAATGCGTATTTTT
* * *
80640373 AAAATAGGACAACA-CTAAAGTGTGTATTTTCAGAACAAGACAACATTGAAGTGCGTATTCAAAA
1 AAAATAGGACAACATC-GAAGTGTGTATTTTCAGAACAAGACAACA-CGAAGTGCGTATTCAGAA
* *
80640437 CAAGAC-GACATCGAAGTGTGTATTTTT
64 CAAGACAG-CATCGAAATGCGTATTTTT
* * *
80640464 AGAAGAGGACAACATCGAAGTGTGTATTTTTAGAAC-A-AC-AC-CGAAGTGCGTATTCAGAACA
1 AAAATAGGACAACATCGAAGTGTGTATTTTCAGAACAAGACAACACGAAGTGCGTATTCAGAACA
* *
80640525 GGACAGCACCGAAATGCGTATTTTT
66 AGACAGCATCGAAATGCGTATTTTT
* * *
80640550 AAAATAGGGCAACA-CTGAAGTGTGTATTTTCAGAACAAGACAACACTGAAATACGTATTCAGAA
1 AAAATAGGACAACATC-GAAGTGTGTATTTTCAGAACAAGACAACAC-GAAGTGCGTATTCAGAA
* *
80640614 CAAGACAACATCGAAGTGCGTATTTTT
64 CAAGACAGCATCGAAATGCGTATTTTT
* * * *
80640641 AGAAGAGGACAACATCGAAGTGTGTATTTTTAGAAC-A-AC-AC-CGAAGTGTGTATTCAGAACA
1 AAAATAGGACAACATCGAAGTGTGTATTTTCAGAACAAGACAACACGAAGTGCGTATTCAGAACA
* *** *
80640702 AGACAGCA-CTGAAGTTTATATTTTC
66 AGACAGCATC-GAAATGCGTATTTTT
* *
80640727 AAAATAGGACAACATCGAAGTGTGTATTTCCAGAACAAGACAACACTGAAGTGTGTATTC-GAAA
1 AAAATAGGACAACATCGAAGTGTGTATTTTCAGAACAAGACAACAC-GAAGTGCGTATTCAG-AA
* *
80640791 CAAGACAACATCGAAGA-GTGTA-TTTT
64 CAAGACAGCATCGAA-ATGCGTATTTTT
* * * * * * * * * *
80640817 ----TAGAACAACACCGAA--GCGCATATTCAGAACAGGACAGCGCCGAAGTTCGTATTTTCAAA
1 AAAATAGGACAACATCGAAGTGTGTATTTTCAGAACAAGACAAC-ACGAAGTGCGTA--TTCAGA
* * * * * * * *
80640876 ATAGGACAACACCGAAGTTCATATTTTC
63 ACAAGACAGCATCGAAATGCGTATTTTT
* * * * *
80640904 AAATTAGGACAACACCGAAGTGTGTATTTTTAGGATAAGACAACACTGAAGTGCGTATTCAGAAC
1 AAAATAGGACAACATCGAAGTGTGTATTTTCAGAACAAGACAACAC-GAAGTGCGTATTCAGAAC
*
80640969 AAGACAACATC
65 AAGACAGCATC
80640980 AAAGTGTGTA
Statistics
Matches: 695, Mismatches: 136, Indels: 90
0.75 0.15 0.10
Matches are distributed among these distances:
84 25 0.04
85 4 0.01
86 233 0.34
87 9 0.01
88 11 0.02
89 28 0.04
90 17 0.02
91 292 0.42
92 9 0.01
93 67 0.10
ACGTcount: A:0.39, C:0.17, G:0.20, T:0.24
Consensus pattern (90 bp):
AAAATAGGACAACATCGAAGTGTGTATTTTCAGAACAAGACAACACGAAGTGCGTATTCAGAACA
AGACAGCATCGAAATGCGTATTTTT
Found at i:80640699 original size:24 final size:25
Alignment explanation
Indices: 80640649--80640702 Score: 74
Period size: 26 Copynumber: 2.2 Consensus size: 25
80640639 TTAGAAGAGG
* *
80640649 ACAACATCGAAGTGTGTATTTTTAGA
1 ACAACACCGAAGTGTGTA-TTTCAGA
80640675 ACAACACCGAAGTGTGTA-TTCAGA
1 ACAACACCGAAGTGTGTATTTCAGA
80640699 ACAA
1 ACAA
80640703 GACAGCACTG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 9 0.35
26 17 0.65
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.26
Consensus pattern (25 bp):
ACAACACCGAAGTGTGTATTTCAGA
Found at i:80640712 original size:146 final size:146
Alignment explanation
Indices: 80640562--80640891 Score: 393
Period size: 146 Copynumber: 2.3 Consensus size: 146
80640552 AATAGGGCAA
* * *
80640562 CACTGAAGTGTGTATTTTCAGAACAAGACAACACT-GAAATACGTA-TT-CAGAACAAGACAACA
1 CACTGAAGT-TGTATTTTCAAAATAGGACAACACTCGAAATACGTATTTCCAGAACAAGACAACA
** * * * *
80640624 -TCGAAGTGCGTATTTTTAGAAGAGGACAACATCGAAGTGTGTATTTTTAGAACAACACCGAAGT
65 CT-GAAGTGCGTA-TTCGA-AACAAGACAACATCGAAGAGTGTATTTTTAGAACAACACCGAAGC
**
80640688 GTGTATTCAGAACAAGACAG
127 GCATATTCAGAACAAGACAG
* * **
80640708 CACTGAAGTTTATATTTTCAAAATAGGACAACA-TCGAAGTGTGTATTTCCAGAACAAGACAACA
1 CACTGAAG-TTGTATTTTCAAAATAGGACAACACTCGAAATACGTATTTCCAGAACAAGACAACA
*
80640772 CTGAAGTGTGTATTCGAAACAAGACAACATCGAAGAGTGTATTTTTAGAACAACACCGAAGCGCA
65 CTGAAGTGCGTATTCGAAACAAGACAACATCGAAGAGTGTATTTTTAGAACAACACCGAAGCGCA
*
80640837 TATTCAGAACAGGACAG
130 TATTCAGAACAAGACAG
* *
80640854 CGCCGAAGTTCGTATTTTCAAAATAGGACAACAC-CGAA
1 CACTGAAGTT-GTATTTTCAAAATAGGACAACACTCGAA
80640892 GTTCATATTT
Statistics
Matches: 157, Mismatches: 20, Indels: 14
0.82 0.10 0.07
Matches are distributed among these distances:
145 3 0.02
146 123 0.78
147 6 0.04
148 24 0.15
149 1 0.01
ACGTcount: A:0.39, C:0.18, G:0.20, T:0.23
Consensus pattern (146 bp):
CACTGAAGTTGTATTTTCAAAATAGGACAACACTCGAAATACGTATTTCCAGAACAAGACAACAC
TGAAGTGCGTATTCGAAACAAGACAACATCGAAGAGTGTATTTTTAGAACAACACCGAAGCGCAT
ATTCAGAACAAGACAG
Found at i:80640968 original size:146 final size:147
Alignment explanation
Indices: 80640609--80640970 Score: 412
Period size: 146 Copynumber: 2.5 Consensus size: 147
80640599 AATACGTATT
* * * *
80640609 CAGAACAAGACAACATCGAAGTGCGTATTTTTAGAAGAGGACAACATCGAAGTGTGTATTTTTAG
1 CAGAACAAGACAACACCGAAGTGTGTATTTTTAGAACAAGACAACATCGAAGTGTGTA-TTTTAG
* ** * *
80640674 AACAACACCGAAGTGTGTATTCAGAACAAGACAGCACTGAAGTTTATATTTTCAAAATAGGACAA
65 AACAACACCGAAGCGCATATTCAGAACAAGACAGCACCGAAGTTCATATTTTCAAAATAGGACAA
* *
80640739 CATCGAAGTGTGTATTTC
130 CACCGAAGTGTATATTTC
* ** *
80640757 CAGAACAAGACAACACTGAAGTGTGTA-TTCGA-AACAAGACAACATCGAAGAGTGTATTTTTAG
1 CAGAACAAGACAACACCGAAGTGTGTATTTTTAGAACAAGACAACATCGAAGTGTGTA-TTTTAG
* * *
80640820 AACAACACCGAAGCGCATATTCAGAACAGGACAGCGCCGAAGTTCGTATTTTCAAAATAGGACAA
65 AACAACACCGAAGCGCATATTCAGAACAAGACAGCACCGAAGTTCATATTTTCAAAATAGGACAA
*
80640885 CACCGAAGT-TCATATTTT
130 CACCGAAGTGT-ATATTTC
* * * * * *
80640903 CA-AATTAGGACAACACCGAAGTGTGTATTTTTAGGATAAGACAACA-CTGAAGTGCGTA-TTCA
1 CAGAA-CAAGACAACACCGAAGTGTGTATTTTTAGAACAAGACAACATC-GAAGTGTGTATTTTA
80640965 GAACAA
64 GAACAA
80640971 GACAACATCA
Statistics
Matches: 180, Mismatches: 29, Indels: 12
0.81 0.13 0.05
Matches are distributed among these distances:
145 3 0.02
146 128 0.71
147 7 0.04
148 42 0.23
ACGTcount: A:0.39, C:0.17, G:0.20, T:0.24
Consensus pattern (147 bp):
CAGAACAAGACAACACCGAAGTGTGTATTTTTAGAACAAGACAACATCGAAGTGTGTATTTTAGA
ACAACACCGAAGCGCATATTCAGAACAAGACAGCACCGAAGTTCATATTTTCAAAATAGGACAAC
ACCGAAGTGTATATTTC
Found at i:80640984 original size:29 final size:28
Alignment explanation
Indices: 80640952--80641046 Score: 90
Period size: 29 Copynumber: 3.4 Consensus size: 28
80640942 GACAACACTG
80640952 AAGTGCGTATTCAGAACAAGACAACATCA
1 AAGTGCGTATTCAGAACAA-ACAACATCA
* *
80640981 AAGTGTGTATATTTAGAAC-AAC-AC-T-A
1 AAGTGCG--TATTCAGAACAAACAACATCA
* *
80641007 AAGTGCGTATTCAGAACAAAACAACACCG
1 AAGTGCGTATTCAGAAC-AAACAACATCA
80641036 AAGTGCGTATT
1 AAGTGCGTATT
80641047 TTCAAAATAA
Statistics
Matches: 53, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
24 9 0.17
26 10 0.19
27 3 0.06
28 2 0.04
29 19 0.36
30 1 0.02
31 9 0.17
ACGTcount: A:0.42, C:0.18, G:0.18, T:0.22
Consensus pattern (28 bp):
AAGTGCGTATTCAGAACAAACAACATCA
Found at i:80641022 original size:24 final size:24
Alignment explanation
Indices: 80640943--80641025 Score: 76
Period size: 24 Copynumber: 3.2 Consensus size: 24
80640933 TTAGGATAAG
*
80640943 ACAACACTGAAGTGCGTATTCAGA
1 ACAACACTAAAGTGCGTATTCAGA
* *
80640967 ACAAGACAACATCAAAGTGTGTATATTTAGA
1 AC-A-AC-AC-T-AAAGTGCG--TATTCAGA
80640998 ACAACACTAAAGTGCGTATTCAGA
1 ACAACACTAAAGTGCGTATTCAGA
80641022 ACAA
1 ACAA
80641026 AACAACACCG
Statistics
Matches: 47, Mismatches: 5, Indels: 14
0.71 0.08 0.21
Matches are distributed among these distances:
24 13 0.28
25 1 0.02
26 9 0.19
27 3 0.06
28 3 0.06
29 8 0.17
30 1 0.02
31 9 0.19
ACGTcount: A:0.43, C:0.18, G:0.17, T:0.22
Consensus pattern (24 bp):
ACAACACTAAAGTGCGTATTCAGA
Found at i:80641029 original size:26 final size:26
Alignment explanation
Indices: 80640945--80641029 Score: 75
Period size: 26 Copynumber: 3.2 Consensus size: 26
80640935 AGGATAAGAC
*
80640945 AACACTGAAGTGCGTATTCAGAACAA
1 AACACTAAAGTGCGTATTCAGAACAA
* * *
80640971 GACAACATCAAAGTGTGTATATTTAGAAC--
1 AAC-AC-T-AAAGTGCG--TATTCAGAACAA
80641000 AACACTAAAGTGCGTATTCAGAACAA
1 AACACTAAAGTGCGTATTCAGAACAA
80641026 AACA
1 AACA
80641030 ACACCGAAGT
Statistics
Matches: 45, Mismatches: 7, Indels: 14
0.68 0.11 0.21
Matches are distributed among these distances:
24 9 0.20
26 13 0.29
27 3 0.07
28 3 0.07
29 8 0.18
31 9 0.20
ACGTcount: A:0.45, C:0.18, G:0.16, T:0.21
Consensus pattern (26 bp):
AACACTAAAGTGCGTATTCAGAACAA
Found at i:80641039 original size:177 final size:176
Alignment explanation
Indices: 80640012--80640998 Score: 1064
Period size: 177 Copynumber: 5.6 Consensus size: 176
80640002 GAGCGCTATG
* *
80640012 TCAAAAGAGGACAACACCGAAGT-TCGTA--TTCAGAACAAGACAACA-TCGAAGTGTGTATTTT
1 TCAAAATAGGACAACACCGAAGTGT-GTATTTTCAGAACAAGACAACACT-GAAGTGCGTA--TT
* * * * ** * **
80640073 CAGAACAGGAAAACATTGAAATGTGTATTTAGAGAAG-GACAATATCGAAGTGCATATTTTCAAA
62 CAGAACAAGACAACATCGAAGTGTGTATTTTTAGAAGAGACAACATCGAAGTGTGTATTTT----
* * ** * * * *
80640137 ATATG-ACAACACCGAAATGTGTATTTTTGAAACAAGACAACACCAAAATGCGTATTT
123 -TA-GAACAACACCGAAGTGCGTA-TTCAG-AACAGGACAGCACCGAAATGCATATTT
* *
80640194 TCAAAATAGGACAACACCAAAGTGTGTATTTTCAGAACAAGACAACATTGAAGTGCGTATTCAGA
1 TCAAAATAGGACAACACCGAAGTGTGTATTTTCAGAACAAGACAACACTGAAGTGCGTATTCAGA
* * *
80640259 ACAAGACAACATCGAAGTGCGTATTTTCAGAAGAGGACAACATCGAAGTGTGTATTTTTAGAATA
66 ACAAGACAACATCGAAGTGTGTATTTTTAGAAGA-GACAACATCGAAGTGTGTATTTTTAGAACA
* * * *
80640324 GCACCGAAGTGCGTATTCAGAACAGGACAGCATCAAAATGCGTATTT
130 ACACCGAAGTGCGTATTCAGAACAGGACAGCACCGAAATGCATATTT
* ** * *
80640371 TTAAAATAGGACAACACTAAAGTGTGTATTTTCAGAACAAGACAACATTGAAGTGCGTATTCAAA
1 TCAAAATAGGACAACACCGAAGTGTGTATTTTCAGAACAAGACAACACTGAAGTGCGTATTCAGA
*
80640436 ACAAGACGACATCGAAGTGTGTATTTTTAGAAGAGGACAACATCGAAGTGTGTATTTTTAGAACA
66 ACAAGACAACATCGAAGTGTGTATTTTTAGAAGA-GACAACATCGAAGTGTGTATTTTTAGAACA
*
80640501 ACACCGAAGTGCGTATTCAGAACAGGACAGCACCGAAATGCGTATTT
130 ACACCGAAGTGCGTATTCAGAACAGGACAGCACCGAAATGCATATTT
* * * * *
80640548 TTAAAATAGGGCAACACTGAAGTGTGTATTTTCAGAACAAGACAACACTGAAATACGTATTCAGA
1 TCAAAATAGGACAACACCGAAGTGTGTATTTTCAGAACAAGACAACACTGAAGTGCGTATTCAGA
*
80640613 ACAAGACAACATCGAAGTGCGTATTTTTAGAAGAGGACAACATCGAAGTGTGTATTTTTAGAACA
66 ACAAGACAACATCGAAGTGTGTATTTTTAGAAGA-GACAACATCGAAGTGTGTATTTTTAGAACA
* * * * **
80640678 ACACCGAAGTGTGTATTCAGAACAAGACAGCACTGAAGTTTATATTT
130 ACACCGAAGTGCGTATTCAGAACAGGACAGCACCGAAATGCATATTT
* * *
80640725 TCAAAATAGGACAACATCGAAGTGTGTATTTCCAGAACAAGACAACACTGAAGTGTGTATTC-GA
1 TCAAAATAGGACAACACCGAAGTGTGTATTTTCAGAACAAGACAACACTGAAGTGCGTATTCAG-
* * * * * *
80640789 AACAAGACAACATCGAAGAGTGTATTTTT---AGA-ACAACACCGAA--GCGCATATTCAGAACA
65 AACAAGACAACATCGAAGTGTGTATTTTTAGAAGAGACAACATCGAAGTGTGTATTTTTAGAACA
* * * * * *
80640848 GGACAGCGCCGAAGTTCGTATTTTCAAAATAGGACAACACCGAAGTTCATATTT
130 --ACA---CCGAAGTGCGTA--TTCAGAACAGGACAGCACCGAAATGCATATTT
* * * *
80640902 TCAAATTAGGACAACACCGAAGTGTGTATTTTTAGGATAAGACAACACTGAAGTGCGTATTCAGA
1 TCAAAATAGGACAACACCGAAGTGTGTATTTTCAGAACAAGACAACACTGAAGTGCGTATTCAGA
* *
80640967 ACAAGACAACATCAAAGTGTGTATATTTAGAA
66 ACAAGACAACATCGAAGTGTGTATTTTTAGAA
80640999 CAACACTAAA
Statistics
Matches: 706, Mismatches: 80, Indels: 40
0.85 0.10 0.05
Matches are distributed among these distances:
170 12 0.02
172 13 0.02
174 3 0.00
175 10 0.01
176 1 0.00
177 541 0.77
178 5 0.01
179 16 0.02
180 1 0.00
182 56 0.08
183 1 0.00
184 46 0.07
185 1 0.00
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.25
Consensus pattern (176 bp):
TCAAAATAGGACAACACCGAAGTGTGTATTTTCAGAACAAGACAACACTGAAGTGCGTATTCAGA
ACAAGACAACATCGAAGTGTGTATTTTTAGAAGAGACAACATCGAAGTGTGTATTTTTAGAACAA
CACCGAAGTGCGTATTCAGAACAGGACAGCACCGAAATGCATATTT
Found at i:80641040 original size:55 final size:58
Alignment explanation
Indices: 80640912--80641045 Score: 175
Period size: 55 Copynumber: 2.3 Consensus size: 58
80640902 TCAAATTAGG
* * *
80640912 ACAACACCGAAGTGTGTATTTTTAGGATAAGACAACACTGAAGTGCGTATTCAGAACAAG
1 ACAACACCGAAGTGTGTATATTTAGG--AAGACAACACTAAAGTGCGTATTCAGAACAAA
* *
80640972 ACAACATCAAAGTGTGTATATTTA-G-A-ACAACACTAAAGTGCGTATTCAGAACAAA
1 ACAACACCGAAGTGTGTATATTTAGGAAGACAACACTAAAGTGCGTATTCAGAACAAA
*
80641027 ACAACACCGAAGTGCGTAT
1 ACAACACCGAAGTGTGTAT
80641046 TTTCAAAATA
Statistics
Matches: 66, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
55 43 0.65
56 1 0.02
59 1 0.02
60 21 0.32
ACGTcount: A:0.41, C:0.18, G:0.19, T:0.22
Consensus pattern (58 bp):
ACAACACCGAAGTGTGTATATTTAGGAAGACAACACTAAAGTGCGTATTCAGAACAAA
Found at i:80641076 original size:323 final size:322
Alignment explanation
Indices: 80640397--80641078 Score: 788
Period size: 323 Copynumber: 2.1 Consensus size: 322
80640387 CTAAAGTGTG
* * * * * * *
80640397 TATTTTCAGAACAAGACAACATTGAAGTGCGTA-TT-CAAAACAAGACGACA-TCGAAGTGTGTA
1 TATTTTCAAAATAAGACAACATCGAACTGTGTATTTCCAGAACAAGACAACACT-GAAGTGTGTA
** * * * * *
80640459 TTTTTAGAAGAGGACAACATCGAAGTGTGTATTTTTAGAACAACACCGAAGTGCGTATTCAGAAC
65 -TTCGA-AACAAGACAACATCGAAGAGTGTATTTTTAGAACAACACCGAAGCGCATATTCAGAAC
* * * *
80640524 AGGACAGCACCGAAATGCGTATTTTTAAAATAGGGCAACACTGAAGTGTGTATTTTCAGAACAAG
128 AGGACAGCACCGAAATGCGTATTTTCAAAATAGGACAACACCGAAGTGTATATTTTCAGAACAAG
* * * *
80640589 ACAACACTGAAATACGTATTCAGAACAAGACAACATCGAAGTGCGTATTTTTAGAAGAGGACAAC
193 ACAACACCGAAATACGTATTCAGAACAAGACAACATCGAAGTGCGTA-TTTCAGAACAAGACAAC
* * * * * * * **
80640654 ATCGAAGTGTGTATTTTTAGAACAACACCGAAGTGTGTATTCAGAACAAGACAGCACTGAAGTTT
257 ATCAAAGTGTGTATATTTAGAACAACACCAAAGTGCGTATTCAGAACAAAACAACACCGAAGTGC
80640719 A
322 A
* *
80640720 TATTTTCAAAATAGGACAACATCGAAGTGTGTATTTCCAGAACAAGACAACACTGAAGTGTGTAT
1 TATTTTCAAAATAAGACAACATCGAACTGTGTATTTCCAGAACAAGACAACACTGAAGTGTGTAT
80640785 TCGAAACAAGACAACATCGAAGAGTGTATTTTTAGAACAACACCGAAGCGCATATTCAGAACAGG
66 TCGAAACAAGACAACATCGAAGAGTGTATTTTTAGAACAACACCGAAGCGCATATTCAGAACAGG
* * * * *
80640850 ACAGCGCCGAAGTTCGTATTTTCAAAATAGGACAACACCGAAGT-TCATATTTTCA-AATTAGGA
131 ACAGCACCGAAATGCGTATTTTCAAAATAGGACAACACCGAAGTGT-ATATTTTCAGAA-CAAGA
* ** * * *
80640913 CAACACCGAAGTGTGTATTTTTAGGATAAGACAACA-CTGAAGTGCGTA-TTCAGAACAAGACAA
194 CAACACCGAAATACGTA--TTCAGAACAAGACAACATC-GAAGTGCGTATTTCAGAACAAGACAA
*
80640976 CATCAAAGTGTGTATATTTAGAACAACACTAAAGTGCGTATTCAGAACAAAACAACACCGAAGTG
256 CATCAAAGTGTGTATATTTAGAACAACACCAAAGTGCGTATTCAGAACAAAACAACACCGAAGTG
*
80641041 CG
321 CA
80641043 TATTTTCAAAATAAGACAGTAC-T-GAACTGTGTATTT
1 TATTTTCAAAATAAGACA--ACATCGAACTGTGTATTT
80641079 AAAACAAGAC
Statistics
Matches: 303, Mismatches: 46, Indels: 20
0.82 0.12 0.05
Matches are distributed among these distances:
322 3 0.01
323 243 0.80
324 7 0.02
325 49 0.16
326 1 0.00
ACGTcount: A:0.39, C:0.17, G:0.20, T:0.25
Consensus pattern (322 bp):
TATTTTCAAAATAAGACAACATCGAACTGTGTATTTCCAGAACAAGACAACACTGAAGTGTGTAT
TCGAAACAAGACAACATCGAAGAGTGTATTTTTAGAACAACACCGAAGCGCATATTCAGAACAGG
ACAGCACCGAAATGCGTATTTTCAAAATAGGACAACACCGAAGTGTATATTTTCAGAACAAGACA
ACACCGAAATACGTATTCAGAACAAGACAACATCGAAGTGCGTATTTCAGAACAAGACAACATCA
AAGTGTGTATATTTAGAACAACACCAAAGTGCGTATTCAGAACAAAACAACACCGAAGTGCA
Found at i:80641106 original size:29 final size:29
Alignment explanation
Indices: 80641074--80641176 Score: 75
Period size: 29 Copynumber: 3.5 Consensus size: 29
80641064 CTGAACTGTG
* *
80641074 TATTTAAAACAAGACAGC-ATCAAAGTACA
1 TATTTAAAACAAAACAACAAT-AAAGTACA
* *
80641103 TATTTTCAAAATAAAACAACAATAAAGTATA
1 TA-TTT-AAAACAAAACAACAATAAAGTACA
** * *
80641134 TATTTAAAACATGAGAACACTGAAA-TACA
1 TATTTAAAACAAAACAACAAT-AAAGTACA
*
80641163 TATTCAAAACAAAA
1 TATTTAAAACAAAA
80641177 TTTTGCGTAT
Statistics
Matches: 57, Mismatches: 13, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
29 27 0.47
30 9 0.16
31 19 0.33
32 2 0.04
ACGTcount: A:0.55, C:0.14, G:0.07, T:0.24
Consensus pattern (29 bp):
TATTTAAAACAAAACAACAATAAAGTACA
Found at i:80645064 original size:19 final size:19
Alignment explanation
Indices: 80645040--80645079 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
80645030 TAATTTTAGT
80645040 GAACTTTATTTCTTCTTTG
1 GAACTTTATTTCTTCTTTG
80645059 GAACTTTATTTCTTCTTTG
1 GAACTTTATTTCTTCTTTG
80645078 GA
1 GA
80645080 GTTAAACTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.17, C:0.15, G:0.12, T:0.55
Consensus pattern (19 bp):
GAACTTTATTTCTTCTTTG
Found at i:80645163 original size:21 final size:21
Alignment explanation
Indices: 80645137--80645179 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
80645127 AGTATAAAGA
80645137 TTAAATTGATGAATTTAATAG
1 TTAAATTGATGAATTTAATAG
80645158 TTAAATTGATGAATTTAATAG
1 TTAAATTGATGAATTTAATAG
80645179 T
1 T
80645180 ATAATAGAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.42, C:0.00, G:0.14, T:0.44
Consensus pattern (21 bp):
TTAAATTGATGAATTTAATAG
Found at i:80645512 original size:133 final size:135
Alignment explanation
Indices: 80645335--80645596 Score: 332
Period size: 138 Copynumber: 1.9 Consensus size: 135
80645325 AGAAAATATG
* * * * * * *
80645335 TTTAAAATGATATTCTTGATAGAGATACACATAAATTCCGAATATAAACA-ATA-AAATGGATAT
1 TTTAAAACGATATTATTAAGAGAGATACAAATAAATTCCGAATATAAACAGACAGAAACGGATAT
* *
80645398 GAAATAATAAAAAAAAGTGAAGTTTAAGAAATGATGCCGAGAACTTATCTATATATAAGTGGTTT
66 GAAATAATAAAAAAAAGTGAAGTTTAAGAAATGATGACGAGAACTTACCTATATATAAGTGGTTT
80645463 GAATT
131 GAATT
* *
80645468 TTTAAAACGATATTATTAAGAGAGATATAAAT-AATTCTCGAATATAAATATGGACAGGAAACGG
1 TTTAAAACGATATTATTAAGAGAGATACAAATAAATTC-CGAATATAAACA--GACA-GAAACGG
* * * *
80645532 ATATGAAATAATAAAAAAATGTGAAGTTTGAGAAATGATGATGAGAACTTGCCTATATATAAGTG
62 ATATGAAATAATAAAAAAAAGTGAAGTTTAAGAAATGATGACGAGAACTTACCTATATATAAGTG
80645597 CAATCGGGTT
Statistics
Matches: 108, Mismatches: 15, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
132 5 0.05
133 37 0.34
136 2 0.02
138 64 0.59
ACGTcount: A:0.47, C:0.07, G:0.17, T:0.30
Consensus pattern (135 bp):
TTTAAAACGATATTATTAAGAGAGATACAAATAAATTCCGAATATAAACAGACAGAAACGGATAT
GAAATAATAAAAAAAAGTGAAGTTTAAGAAATGATGACGAGAACTTACCTATATATAAGTGGTTT
GAATT
Found at i:80647381 original size:18 final size:18
Alignment explanation
Indices: 80647348--80647425 Score: 57
Period size: 18 Copynumber: 3.9 Consensus size: 18
80647338 CATGAGTTTA
*
80647348 TATTTTTTTATGAATTTTT
1 TATTTTTTTA-CAATTTTT
80647367 TATTTTTTTACAATTATTAATGT
1 TATTTTTTTACAA-T-TT--T-T
*
80647390 ATATTTTTTTATAATTTTT
1 -TATTTTTTTACAATTTTT
* *
80647409 AATTTTTCTACAATTTT
1 TATTTTTTTACAATTTT
80647426 GCACTCATCT
Statistics
Matches: 48, Mismatches: 5, Indels: 13
0.73 0.08 0.20
Matches are distributed among these distances:
18 16 0.33
19 12 0.25
20 3 0.06
22 3 0.06
23 2 0.04
24 12 0.25
ACGTcount: A:0.27, C:0.04, G:0.03, T:0.67
Consensus pattern (18 bp):
TATTTTTTTACAATTTTT
Found at i:80647503 original size:16 final size:18
Alignment explanation
Indices: 80647482--80647524 Score: 54
Period size: 16 Copynumber: 2.4 Consensus size: 18
80647472 CTACAGGTAC
80647482 ATTTTTATAAATT-TT-T
1 ATTTTTATAAATTATTAT
*
80647498 ATTTTTATGAATTATTAAT
1 ATTTTTATAAATTATT-AT
80647517 ATTTTTAT
1 ATTTTTAT
80647525 TTTTTGAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
16 12 0.52
17 2 0.09
19 9 0.39
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (18 bp):
ATTTTTATAAATTATTAT
Found at i:80647521 original size:24 final size:23
Alignment explanation
Indices: 80647486--80647534 Score: 64
Period size: 25 Copynumber: 2.1 Consensus size: 23
80647476 AGGTACATTT
80647486 TTATAAA-TTTTTATTTTTATGAA
1 TTATAAATTTTTTATTTTT-TGAA
*
80647509 TTATTAATATTTTTATTTTTTGAA
1 TTATAAAT-TTTTTATTTTTTGAA
80647533 TT
1 TT
80647535 TTTTATAGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 6 0.26
24 6 0.26
25 11 0.48
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (23 bp):
TTATAAATTTTTTATTTTTTGAA
Found at i:80647550 original size:24 final size:25
Alignment explanation
Indices: 80647498--80647550 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 25
80647488 ATAAATTTTT
* *
80647498 ATTTTTATGAATTATTAATATTTTT
1 ATTTTTATGAATTATTAATAGTTTA
* *
80647523 ATTTTT-TGAATTTTTTATAGTTTA
1 ATTTTTATGAATTATTAATAGTTTA
80647547 ATTT
1 ATTT
80647551 AATTTTAAAC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 18 0.75
25 6 0.25
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.66
Consensus pattern (25 bp):
ATTTTTATGAATTATTAATAGTTTA
Found at i:80648442 original size:15 final size:14
Alignment explanation
Indices: 80648422--80648469 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
80648412 ATTATAAAAT
*
80648422 TTAAAAGGTTTTAA
1 TTAAAAAGTTTTAA
80648436 TTAAAAA-TTTTATA
1 TTAAAAAGTTTTA-A
*
80648450 TTAAAAATGTTTAAA
1 TTAAAAA-GTTTTAA
80648465 TTAAA
1 TTAAA
80648470 TTATTAATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
13 5 0.17
14 14 0.48
15 6 0.21
16 4 0.14
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (14 bp):
TTAAAAAGTTTTAA
Found at i:80650842 original size:11 final size:11
Alignment explanation
Indices: 80650826--80650856 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
80650816 GGAAACATAC
*
80650826 GCAATAGCAAA
1 GCAATAGAAAA
80650837 GCAATAGAAAA
1 GCAATAGAAAA
80650848 GCAATAGAA
1 GCAATAGAA
80650857 CAAGAAGGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.58, C:0.13, G:0.19, T:0.10
Consensus pattern (11 bp):
GCAATAGAAAA
Found at i:80653561 original size:14 final size:14
Alignment explanation
Indices: 80653542--80653574 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
80653532 TTAGAAAATT
80653542 AAATTA-TAATTCTA
1 AAATTATTAATT-TA
80653556 AAATTATTAATTTA
1 AAATTATTAATTTA
80653570 AAATT
1 AAATT
80653575 TTATAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (14 bp):
AAATTATTAATTTA
Found at i:80658757 original size:14 final size:15
Alignment explanation
Indices: 80658738--80658779 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
80658728 TGGTAAACTA
80658738 AAAAAATTAAATGCT
1 AAAAAATTAAATGCT
* *
80658753 -CAAAATATAAATGTT
1 AAAAAAT-TAAATGCT
80658768 AAAAAATTAAAT
1 AAAAAATTAAAT
80658780 TATAATTAGA
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
14 5 0.23
15 12 0.55
16 5 0.23
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.29
Consensus pattern (15 bp):
AAAAAATTAAATGCT
Found at i:80660955 original size:5 final size:5
Alignment explanation
Indices: 80660945--80660972 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
80660935 AAAATGTGTG
80660945 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
80660973 GAATACATAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:80668366 original size:21 final size:21
Alignment explanation
Indices: 80668335--80668391 Score: 87
Period size: 21 Copynumber: 2.7 Consensus size: 21
80668325 GGTGGATCAG
*
80668335 CTCTCACGAGCTTCTGTTCAA
1 CTCTTACGAGCTTCTGTTCAA
*
80668356 CTTTTACGAGCTTCTGTTCAA
1 CTCTTACGAGCTTCTGTTCAA
*
80668377 CTCTTATGAGCTTCT
1 CTCTTACGAGCTTCT
80668392 CTTAATGATG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.18, C:0.28, G:0.14, T:0.40
Consensus pattern (21 bp):
CTCTTACGAGCTTCTGTTCAA
Found at i:80670357 original size:22 final size:22
Alignment explanation
Indices: 80670329--80670396 Score: 136
Period size: 22 Copynumber: 3.1 Consensus size: 22
80670319 AAACCAAGCC
80670329 AGATAAAATTTTGAACATTAGG
1 AGATAAAATTTTGAACATTAGG
80670351 AGATAAAATTTTGAACATTAGG
1 AGATAAAATTTTGAACATTAGG
80670373 AGATAAAATTTTGAACATTAGG
1 AGATAAAATTTTGAACATTAGG
80670395 AG
1 AG
80670397 GAACTTGAAG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 46 1.00
ACGTcount: A:0.46, C:0.04, G:0.19, T:0.31
Consensus pattern (22 bp):
AGATAAAATTTTGAACATTAGG
Found at i:80676556 original size:31 final size:32
Alignment explanation
Indices: 80676505--80676589 Score: 97
Period size: 31 Copynumber: 2.8 Consensus size: 32
80676495 ATACACACAT
* *
80676505 ATAATATATA-CTAAATAAAATAATAAAAT-A
1 ATAATAAATATCTAATTAAAATAATAAAATAA
* *
80676535 ATAATAAATATCTTATTAAAAT-ATTAAATAA
1 ATAATAAATATCTAATTAAAATAATAAAATAA
*
80676566 ATAATAATTATCTAATT-AAATAAT
1 ATAATAAATATCTAATTAAAATAAT
80676590 TATAACATAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
30 19 0.41
31 27 0.59
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (32 bp):
ATAATAAATATCTAATTAAAATAATAAAATAA
Found at i:80676575 original size:23 final size:23
Alignment explanation
Indices: 80676516--80676575 Score: 56
Period size: 23 Copynumber: 2.7 Consensus size: 23
80676506 TAATATATAC
80676516 TAAAT-AA-AATAA-TAAAATAA
1 TAAATAAATAATAATTAAAATAA
* * *
80676536 T-AATAAATATCTTATTAAAATAT
1 TAAATAAATA-ATAATTAAAATAA
80676559 TAAATAAATAATAATTA
1 TAAATAAATAATAATTA
80676576 TCTAATTAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 7
0.71 0.12 0.17
Matches are distributed among these distances:
19 3 0.10
20 3 0.10
21 1 0.03
22 2 0.07
23 13 0.43
24 8 0.27
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (23 bp):
TAAATAAATAATAATTAAAATAA
Found at i:80677652 original size:20 final size:20
Alignment explanation
Indices: 80677601--80677652 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
80677591 AATAAAATTG
*
80677601 TAATATTAAATAAATTATTA
1 TAATATTAAATAAATTATGA
* *
80677621 AAATAATT-AATAATTTATGA
1 TAAT-ATTAAATAAATTATGA
80677641 TAATATTAAATA
1 TAATATTAAATA
80677653 TAAATAATTA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
19 3 0.12
20 20 0.77
21 3 0.12
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (20 bp):
TAATATTAAATAAATTATGA
Found at i:80678118 original size:25 final size:25
Alignment explanation
Indices: 80678087--80678137 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
80678077 CAAGTTAATC
80678087 GAATCGAGTTTCGAGTTCAAGTCAA
1 GAATCGAGTTTCGAGTTCAAGTCAA
80678112 GAATCGAGTTTCGAGTTCAAGTCAA
1 GAATCGAGTTTCGAGTTCAAGTCAA
80678137 G
1 G
80678138 TTGAATCTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.27
Consensus pattern (25 bp):
GAATCGAGTTTCGAGTTCAAGTCAA
Found at i:80684341 original size:18 final size:18
Alignment explanation
Indices: 80684318--80684374 Score: 87
Period size: 18 Copynumber: 3.2 Consensus size: 18
80684308 CCCAACTACT
*
80684318 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
**
80684336 GTATACGTGAATAGTGTC
1 GTATACGTGAATAGTACC
80684354 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
80684372 GTA
1 GTA
80684375 AACGGTCGTA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.28
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:80688485 original size:21 final size:18
Alignment explanation
Indices: 80688475--80688512 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
80688465 AATCTAAATT
80688475 TATTTTATAATAATATAA
1 TATTTTATAATAATATAA
80688493 TATTTTATAATAAT-TAA
1 TATTTTATAATAATATAA
80688510 TAT
1 TAT
80688513 CATATATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
TATTTTATAATAATATAA
Found at i:80697381 original size:8 final size:8
Alignment explanation
Indices: 80697370--80697404 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
80697360 TAATCTTTTA
80697370 AAAATTAT
1 AAAATTAT
80697378 AAAATTAT
1 AAAATTAT
*
80697386 AAGATTAT
1 AAAATTAT
*
80697394 AAAATGAT
1 AAAATTAT
80697402 AAA
1 AAA
80697405 GTCACATTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.31
Consensus pattern (8 bp):
AAAATTAT
Found at i:80699939 original size:21 final size:21
Alignment explanation
Indices: 80699915--80699957 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
80699905 TCTTCAATTA
80699915 ACACTCACAGAAGACTCAAAG
1 ACACTCACAGAAGACTCAAAG
*
80699936 ACACTCACAGCAGACTCAAAG
1 ACACTCACAGAAGACTCAAAG
80699957 A
1 A
80699958 AGCTCTATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.47, C:0.30, G:0.14, T:0.09
Consensus pattern (21 bp):
ACACTCACAGAAGACTCAAAG
Found at i:80702952 original size:379 final size:379
Alignment explanation
Indices: 80702253--80703376 Score: 2185
Period size: 379 Copynumber: 3.0 Consensus size: 379
80702243 GCATTCAATA
*
80702253 GCAATAAATTATAATGAGAACAAGAGATGAACACACAATTGCGTCTGTTGATGTGCATATGTGTG
1 GCAATAAATTATAATGAAAACAAGAGATGAACACACAATTGCGTCTGTTGATGTGCATATGTGTG
80702318 AGACAAAGAGAGAGGGAGAGGATAAATCAAACCAAATGAAAAAAAGCGAAGAAAGCACAAATTAA
66 AGACAAAGAGAGAGGGAGAGGATAAATCAAACCAAATGAAAAAAAGCGAAGAAAGCACAAATTAA
* *
80702383 ATCAAATGAAAAGATTCAGAGATTCGTTAACCAAATGAAAAGAAGTAAAGAAAGCACAAATTAAA
131 ATCAAATGAAAAGATTCAGAGATTCGTTAACCAAATGAAAATAAGCAAAGAAAGCACAAATTAAA
*
80702448 TCAACAACAAGAAGGAAAAAAAAGAGCTCACTCTTTCGGTCGTTCATTTCAAAGAAAAAAACTGT
196 TCAACAACAAGAAGGAAAAAAAAGAGCTCACTCTTTCGGTCGTTCATTTCAAAGGAAAAAACTGT
80702513 TGCATTCAACACCTGGATTGGGAAGTTTCCCATTCACTTCCCAGGATTATCTTCACTGCTTTTTC
261 TGCATTCAACACCTGGATTGGGAAGTTTCCCATTCACTTCCCAGGATTATCTTCACTGCTTTTTC
80702578 CTCAATTTTGACCCAAATTTCCCCAATCATCTTATTTCTAAGAAACTTACAAAT
326 CTCAATTTTGACCCAAATTTCCCCAATCATCTTATTTCTAAGAAACTTACAAAT
80702632 GCAATAAATTATAATGAAAACAAGAGATGAACACACAATTGCGTCTGTTGATGTGCATATGTGTG
1 GCAATAAATTATAATGAAAACAAGAGATGAACACACAATTGCGTCTGTTGATGTGCATATGTGTG
80702697 AGACAAAGAGAGAGGGAGAGGATAAATCAAACCAAATGAAAAAAAGCGAAGAAAGCACAAATTAA
66 AGACAAAGAGAGAGGGAGAGGATAAATCAAACCAAATGAAAAAAAGCGAAGAAAGCACAAATTAA
80702762 ATCAAATGAAAAGATTCAGAGATTCGTTAACCAAATGAAAATAAGCAAAGAAAGCACAAATTAAA
131 ATCAAATGAAAAGATTCAGAGATTCGTTAACCAAATGAAAATAAGCAAAGAAAGCACAAATTAAA
80702827 TCAACAACAAGAAGGAAAAAAAAGAGCTCACTCTTTCGGTCGTTCATTTCAAAGGAAAAAACTGT
196 TCAACAACAAGAAGGAAAAAAAAGAGCTCACTCTTTCGGTCGTTCATTTCAAAGGAAAAAACTGT
80702892 TGCATTCAACACCTGGATTGGGAAGTTTCCCATTCACTTCCCAGGATTATCTTCACTGCTTTTTC
261 TGCATTCAACACCTGGATTGGGAAGTTTCCCATTCACTTCCCAGGATTATCTTCACTGCTTTTTC
*
80702957 CTCAATTTTGACCCAAATTTCCCCAATCATCTTATTTCTAAGAAACTTACAACT
326 CTCAATTTTGACCCAAATTTCCCCAATCATCTTATTTCTAAGAAACTTACAAAT
80703011 GCAATAAATTATAATGAAAACAAGAGATGAACACACAATTGCGTCTGTTGATGTGCATATGTGTG
1 GCAATAAATTATAATGAAAACAAGAGATGAACACACAATTGCGTCTGTTGATGTGCATATGTGTG
* *
80703076 AGACAAGGAGAGAGGGAGAGGATAAATCAAACCAAATGAAAAAAAGTGAAGAAAGCACAAATTAA
66 AGACAAAGAGAGAGGGAGAGGATAAATCAAACCAAATGAAAAAAAGCGAAGAAAGCACAAATTAA
80703141 ATCAAATGAAAAGATTCAGAGATTCGTTAACCAAATGAAAATAAGCAAAGAAAGCACAAATTAAA
131 ATCAAATGAAAAGATTCAGAGATTCGTTAACCAAATGAAAATAAGCAAAGAAAGCACAAATTAAA
80703206 TCAACAACAAGAAGGAAAAAAAAGAGCTCACTCTTTCGGTCGTTCATTTCAAAGGAAAAAACTGT
196 TCAACAACAAGAAGGAAAAAAAAGAGCTCACTCTTTCGGTCGTTCATTTCAAAGGAAAAAACTGT
80703271 TGCATTCAACACCTGGATTGGGAAGTTTCCCATTCACTTCCCAGGATTATCTTCACTGCTTTTTC
261 TGCATTCAACACCTGGATTGGGAAGTTTCCCATTCACTTCCCAGGATTATCTTCACTGCTTTTTC
80703336 CTCAATTTTGACCCAAATTTCCCCAATCATCTTATTTCTAA
326 CTCAATTTTGACCCAAATTTCCCCAATCATCTTATTTCTAA
80703377 TCATTTTATT
Statistics
Matches: 738, Mismatches: 7, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
379 738 1.00
ACGTcount: A:0.42, C:0.18, G:0.16, T:0.24
Consensus pattern (379 bp):
GCAATAAATTATAATGAAAACAAGAGATGAACACACAATTGCGTCTGTTGATGTGCATATGTGTG
AGACAAAGAGAGAGGGAGAGGATAAATCAAACCAAATGAAAAAAAGCGAAGAAAGCACAAATTAA
ATCAAATGAAAAGATTCAGAGATTCGTTAACCAAATGAAAATAAGCAAAGAAAGCACAAATTAAA
TCAACAACAAGAAGGAAAAAAAAGAGCTCACTCTTTCGGTCGTTCATTTCAAAGGAAAAAACTGT
TGCATTCAACACCTGGATTGGGAAGTTTCCCATTCACTTCCCAGGATTATCTTCACTGCTTTTTC
CTCAATTTTGACCCAAATTTCCCCAATCATCTTATTTCTAAGAAACTTACAAAT
Found at i:80703380 original size:15 final size:15
Alignment explanation
Indices: 80703360--80703391 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
80703350 AAATTTCCCC
80703360 AATCATCTTATTTCT
1 AATCATCTTATTTCT
*
80703375 AATCATTTTATTTCT
1 AATCATCTTATTTCT
80703390 AA
1 AA
80703392 GAAACTTACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.16, G:0.00, T:0.53
Consensus pattern (15 bp):
AATCATCTTATTTCT
Found at i:80704099 original size:64 final size:64
Alignment explanation
Indices: 80704024--80704170 Score: 267
Period size: 64 Copynumber: 2.3 Consensus size: 64
80704014 TATAGTATTT
*
80704024 AAATTAGAGGATTAGAACTTAAGATTTTAAAATTCTCAAATTTCTAACCTTATTAATTCAATCA
1 AAATTAGAGGATTCGAACTTAAGATTTTAAAATTCTCAAATTTCTAACCTTATTAATTCAATCA
* *
80704088 AAATTAAAGGATTCGAACTTAAGATTTTAAAATTCTCAAATTTCTAACCTTATTCATTCAATCA
1 AAATTAGAGGATTCGAACTTAAGATTTTAAAATTCTCAAATTTCTAACCTTATTAATTCAATCA
80704152 AAATTAGAGGATTCGAACT
1 AAATTAGAGGATTCGAACT
80704171 ATAATAACAT
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 79 1.00
ACGTcount: A:0.41, C:0.14, G:0.09, T:0.36
Consensus pattern (64 bp):
AAATTAGAGGATTCGAACTTAAGATTTTAAAATTCTCAAATTTCTAACCTTATTAATTCAATCA
Found at i:80707757 original size:21 final size:21
Alignment explanation
Indices: 80707733--80707785 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
80707723 CATTGTTTCT
*
80707733 AATCTCACCGCTACAGTACCC
1 AATCTCACCGCTACAGTAACC
*
80707754 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
80707775 AATCTCACCGC
1 AATCTCACCGC
80707786 CATCGCTGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.30, C:0.40, G:0.09, T:0.21
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:80709837 original size:21 final size:22
Alignment explanation
Indices: 80709804--80709852 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
80709794 ATATACAAAA
*
80709804 AAAAATTATA-TTTGACCCTTT
1 AAAAATTATATTTTAACCCTTT
*
80709825 TAAAATT-TGATTTTAACCCTTT
1 AAAAATTAT-ATTTTAACCCTTT
80709847 AAAAAT
1 AAAAAT
80709853 AAATTTTTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 7 0.30
22 15 0.65
ACGTcount: A:0.41, C:0.12, G:0.04, T:0.43
Consensus pattern (22 bp):
AAAAATTATATTTTAACCCTTT
Found at i:80710761 original size:21 final size:20
Alignment explanation
Indices: 80710737--80710775 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
80710727 GTTTTGTATT
80710737 TATTAAATATATATTATTATA
1 TATTAAATATATA-TATTATA
* *
80710758 TATTACATATCTATATTA
1 TATTAAATATATATATTA
80710776 AAAAAATTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (20 bp):
TATTAAATATATATATTATA
Found at i:80724507 original size:16 final size:15
Alignment explanation
Indices: 80724488--80724537 Score: 64
Period size: 15 Copynumber: 3.3 Consensus size: 15
80724478 TTTTAATCTA
80724488 AATTCAAAATAATTC
1 AATTCAAAATAATTC
*
80724503 GAATTTAAAATAATTC
1 -AATTCAAAATAATTC
* *
80724519 AACTCAAAATAATCC
1 AATTCAAAATAATTC
80724534 AATT
1 AATT
80724538 TTGAAAAATT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
15 15 0.52
16 14 0.48
ACGTcount: A:0.52, C:0.14, G:0.02, T:0.32
Consensus pattern (15 bp):
AATTCAAAATAATTC
Found at i:80726085 original size:3 final size:3
Alignment explanation
Indices: 80726077--80726101 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
80726067 TTATCATCCA
80726077 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
80726102 GTGTTTGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:80729446 original size:23 final size:23
Alignment explanation
Indices: 80729420--80729486 Score: 57
Period size: 23 Copynumber: 2.9 Consensus size: 23
80729410 GTAAGGCTGC
80729420 AAATGTTAGGTTAGAATTGTAGT
1 AAATGTTAGGTTAGAATTGTAGT
* **
80729443 AAAT-TTA-TTCTAGAATTTGTTTT
1 AAATGTTAGGT-TAGAA-TTGTAGT
* *
80729466 AAATGCTAGGCTAGAATTGTA
1 AAATGTTAGGTTAGAATTGTA
80729487 CTAAGTTTAT
Statistics
Matches: 33, Mismatches: 7, Indels: 8
0.69 0.15 0.17
Matches are distributed among these distances:
21 1 0.03
22 8 0.24
23 17 0.52
24 7 0.21
ACGTcount: A:0.34, C:0.04, G:0.19, T:0.42
Consensus pattern (23 bp):
AAATGTTAGGTTAGAATTGTAGT
Found at i:80731687 original size:23 final size:23
Alignment explanation
Indices: 80731656--80731710 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 23
80731646 TAATGATGTG
80731656 AATAATAAAATAT-ATAAATATAA
1 AATAATAAAATATCA-AAATATAA
* *
80731679 AATATTAAAATATCAAAATATTAG
1 AATAATAAAATATCAAAATA-TAA
80731703 AATAATAA
1 AATAATAA
80731711 TTAATATTGA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 17 0.63
24 10 0.37
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (23 bp):
AATAATAAAATATCAAAATATAA
Found at i:80731696 original size:8 final size:7
Alignment explanation
Indices: 80731660--80731699 Score: 53
Period size: 8 Copynumber: 5.3 Consensus size: 7
80731650 GATGTGAATA
80731660 ATAAAAT
1 ATAAAAT
80731667 ATATAAAT
1 ATA-AAAT
80731675 ATAAAAT
1 ATAAAAT
80731682 ATTAAAAT
1 A-TAAAAT
80731690 ATCAAAAT
1 AT-AAAAT
80731698 AT
1 AT
80731700 TAGAATAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
7 9 0.30
8 21 0.70
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (7 bp):
ATAAAAT
Found at i:80731698 original size:16 final size:15
Alignment explanation
Indices: 80731660--80731706 Score: 60
Period size: 16 Copynumber: 3.1 Consensus size: 15
80731650 GATGTGAATA
80731660 ATAAAATA-TATAAAT
1 ATAAAATATTA-AAAT
80731675 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
80731690 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
80731706 A
1 A
80731707 ATAATTAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
15 14 0.48
16 15 0.52
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:80731706 original size:8 final size:8
Alignment explanation
Indices: 80731656--80731706 Score: 52
Period size: 8 Copynumber: 6.5 Consensus size: 8
80731646 TAATGATGTG
*
80731656 AATAATAA
1 AATATTAA
80731664 AATA-TATA
1 AATATTA-A
80731672 AATA-TAA
1 AATATTAA
80731679 AATATTAA
1 AATATTAA
*
80731687 AATATCAA
1 AATATTAA
*
80731695 AATATTAG
1 AATATTAA
80731703 AATA
1 AATA
80731707 ATAATTAATA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
7 7 0.18
8 31 0.82
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:80731920 original size:22 final size:23
Alignment explanation
Indices: 80731860--80731921 Score: 72
Period size: 25 Copynumber: 2.7 Consensus size: 23
80731850 GATAATATTA
*
80731860 AAAATATGTACATAATATAGTGTT
1 AAAATATATACATAATATAG-GTT
*
80731884 AAAATTACATACATAATATA-GTT
1 AAAA-TATATACATAATATAGGTT
*
80731907 AAGATATATACATAA
1 AAAATATATACATAA
80731922 GATAACATGT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
22 10 0.30
23 6 0.18
24 4 0.12
25 13 0.39
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (23 bp):
AAAATATATACATAATATAGGTT
Found at i:80731972 original size:25 final size:25
Alignment explanation
Indices: 80731944--80732075 Score: 93
Period size: 25 Copynumber: 5.6 Consensus size: 25
80731934 AAAAACAAAT
*
80731944 ATATATAAATAATATAATATTAAAG
1 ATATATACATAATATAATATTAAAG
* * *
80731969 ATATATACATAAAATAGTA-TAATAT
1 ATATATACATAATATAATATTAA-AG
* *
80731994 ATATATACGTAATATAGA-ATTTAA-
1 ATATATACATAATATA-ATATTAAAG
* *
80732018 A-ATATACCTAATAT-AT-TAAAAG
1 ATATATACATAATATAATATTAAAG
*
80732040 A-ATATATATAATATAATATT-AAG
1 ATATATACATAATATAATATTAAAG
*
80732063 AAATATA-ATAATA
1 ATATATACATAATA
80732076 ACAAAAAAAG
Statistics
Matches: 85, Mismatches: 14, Indels: 18
0.73 0.12 0.15
Matches are distributed among these distances:
21 4 0.05
22 12 0.14
23 24 0.28
24 10 0.12
25 33 0.39
26 2 0.02
ACGTcount: A:0.57, C:0.03, G:0.05, T:0.36
Consensus pattern (25 bp):
ATATATACATAATATAATATTAAAG
Found at i:80732645 original size:30 final size:30
Alignment explanation
Indices: 80732611--80732698 Score: 158
Period size: 30 Copynumber: 2.9 Consensus size: 30
80732601 GGAGCAAGTG
*
80732611 TGGCTAGTGGATTTGGTGGTGGAAAAGGTA
1 TGGCTAGTGGAGTTGGTGGTGGAAAAGGTA
*
80732641 TGGCTAGTGGAGTTGGTGGTGGAAAAGGTG
1 TGGCTAGTGGAGTTGGTGGTGGAAAAGGTA
80732671 TGGCTAGTGGAGTTGGTGGTGGAAAAGG
1 TGGCTAGTGGAGTTGGTGGTGGAAAAGG
80732699 CTAAGATTTA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 56 1.00
ACGTcount: A:0.22, C:0.03, G:0.48, T:0.27
Consensus pattern (30 bp):
TGGCTAGTGGAGTTGGTGGTGGAAAAGGTA
Found at i:80732672 original size:60 final size:60
Alignment explanation
Indices: 80732564--80732698 Score: 175
Period size: 60 Copynumber: 2.2 Consensus size: 60
80732554 TAGGTACAAG
* * * *
80732564 TGGTGGTGGAGCAA-GTATGGTTAGTGGAGTAGGTAATGGAGCAAGTGTGGCTAGTGGATT
1 TGGTGGTGGA-AAAGGTATGGCTAGTGGAGTAGGTAATGGAGAAAGTGTGGCTAGTGGAGT
* **
80732624 TGGTGGTGGAAAAGGTATGGCTAGTGGAGTTGGTGGTGGA-AAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTATGGCTAGTGGAGTAGGTAATGGAGAAA-GTGTGGCTAGTGGAGT
80732684 TGGTGGTGGAAAAGG
1 TGGTGGTGGAAAAGG
80732699 CTAAGATTTA
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
59 4 0.06
60 62 0.94
ACGTcount: A:0.23, C:0.04, G:0.47, T:0.27
Consensus pattern (60 bp):
TGGTGGTGGAAAAGGTATGGCTAGTGGAGTAGGTAATGGAGAAAGTGTGGCTAGTGGAGT
Found at i:80733723 original size:73 final size:72
Alignment explanation
Indices: 80733590--80733805 Score: 281
Period size: 73 Copynumber: 3.0 Consensus size: 72
80733580 TAAATTGAAA
* * * *
80733590 AAACAAAAATTGAAAATACGTCAGCGTGCGAGCTGAGGCTCAACTCACCTCTTGCAATATGAGTT
1 AAACAGAAATTGAAAATACCTCAGC-TGTGAGCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
80733655 GATTTGAC
65 GATTTGAC
* * *
80733663 GAACAGAAATTGAAAAGACCTCAGCATGTGAGCTGAGGCTCAACTCACCTCTCGCGATATGAGTT
1 AAACAGAAATTGAAAATACCTCAGC-TGTGAGCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
80733728 GATTTTTGAC
65 GA--TTTGAC
* ** * *
80733738 AAACAGAAATTGAAATTACCTCAGC-GTGTCCTGAGGCTCGACTCACCTCTCGTAATATGAGTTG
1 AAACAGAAATTGAAAATACCTCAGCTGTGAGCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
80733802 ATTT
66 ATTT
80733806 CTTTGAAGAG
Statistics
Matches: 125, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
71 3 0.02
73 94 0.75
75 28 0.22
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.26
Consensus pattern (72 bp):
AAACAGAAATTGAAAATACCTCAGCTGTGAGCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTGAC
Found at i:80733893 original size:89 final size:89
Alignment explanation
Indices: 80733733--80734159 Score: 674
Period size: 89 Copynumber: 4.8 Consensus size: 89
80733723 GAGTTGATTT
* * * * *
80733733 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCGACTCACCTCTCGTAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
80733798 GTTGATTTCTTTGAAGAGCAGAAA
66 GTTGATTTTTTTGAAGAGCAGAAA
* ** *
80733822 TTGGAAAGTAGAAATCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
80733887 GTTGATTTTTTTTAAGAGCAGAAA
66 GTTGATTTTTTTGAAGAGCAGAAA
80733911 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
80733976 GTTAATTTTTTTGAAGAGCAGAAA
66 GTTGATTTTTTTGAAGAGCAGAAA
* * * *
80734000 TTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCTTAAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
80734065 GCTGATTTTTTTGAAGAGCAGAAA
66 GTTGATTTTTTTGAAGAGCAGAAA
* * *
80734089 TTGAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGTTCAACTAACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
80734154 GTTGAT
66 GTTGAT
80734160 CTTTGAAACA
Statistics
Matches: 307, Mismatches: 31, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
89 307 1.00
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.27
Consensus pattern (89 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTTTGAAGAGCAGAAA
Found at i:80733924 original size:14 final size:14
Alignment explanation
Indices: 80733905--80733931 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
80733895 TTTTTAAGAG
80733905 CAGAAATTGAAAAA
1 CAGAAATTGAAAAA
80733919 CAGAAATTGAAAA
1 CAGAAATTGAAAA
80733932 TACCTCAGCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.63, C:0.07, G:0.15, T:0.15
Consensus pattern (14 bp):
CAGAAATTGAAAAA
Found at i:80734098 original size:14 final size:14
Alignment explanation
Indices: 80734075--80734109 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
80734065 GCTGATTTTT
*
80734075 TTGAAGAGCAGAAA
1 TTGAAAAGCAGAAA
80734089 TTGAAAAGCAGAAA
1 TTGAAAAGCAGAAA
80734103 TTGAAAA
1 TTGAAAA
80734110 TACCTCAGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.54, C:0.06, G:0.23, T:0.17
Consensus pattern (14 bp):
TTGAAAAGCAGAAA
Found at i:80746105 original size:16 final size:15
Alignment explanation
Indices: 80746084--80746131 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
80746074 GATGTGAATA
80746084 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
80746100 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
80746115 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
80746131 A
1 A
80746132 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:80746107 original size:24 final size:24
Alignment explanation
Indices: 80746080--80746135 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
80746070 TAATGATGTG
*
80746080 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
* *
80746104 AATATTAAAATATCAAAATATTAG
1 AATAATAAAATATCAAAATATTAA
80746128 AATAATAA
1 AATAATAA
80746136 TAATTAATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:80746114 original size:8 final size:8
Alignment explanation
Indices: 80746080--80746131 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
80746070 TAATGATGTG
*
80746080 AATAATAA
1 AATATTAA
80746088 AATATATAA
1 AATAT-TAA
80746097 AATA-TAA
1 AATATTAA
80746104 AATATTAA
1 AATATTAA
*
80746112 AATATCAA
1 AATATTAA
*
80746120 AATATTAG
1 AATATTAA
80746128 AATA
1 AATA
80746132 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:80746346 original size:22 final size:24
Alignment explanation
Indices: 80746283--80746347 Score: 80
Period size: 25 Copynumber: 2.8 Consensus size: 24
80746273 CGTGATAATA
*
80746283 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAG-G
*
80746308 TTAAAAATACATACATAATATA-G
1 TTAAAAATATATACATAATATAGG
*
80746331 TT-AAGATATATACATAA
1 TTAAAAATATATACATAA
80746348 GATAACATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 13 0.36
23 3 0.08
25 20 0.56
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (24 bp):
TTAAAAATATATACATAATATAGG
Found at i:80746398 original size:25 final size:25
Alignment explanation
Indices: 80746370--80746426 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 25
80746360 AAAAACAAAT
* *
80746370 ATATATAAATAATATAATATTAAAG
1 ATATATAAATAAAATAATATAAAAG
* * *
80746395 ATATATACATAAAATAGTATAAAAT
1 ATATATAAATAAAATAATATAAAAG
80746420 ATATATA
1 ATATATA
80746427 TACGTAATAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATATAAATAAAATAATATAAAAG
Found at i:80747067 original size:30 final size:30
Alignment explanation
Indices: 80747033--80747093 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
80747023 AATGGAGCAA
*
80747033 GTGTGGCTAGTGGATTTGGTGGTGGAAAAG
1 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
80747063 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
1 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
80747093 G
1 G
80747094 CTAAGATTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.20, C:0.03, G:0.49, T:0.28
Consensus pattern (30 bp):
GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
Found at i:80750063 original size:31 final size:31
Alignment explanation
Indices: 80750022--80750094 Score: 101
Period size: 31 Copynumber: 2.4 Consensus size: 31
80750012 TTTAAAAAAA
* **
80750022 AATTCAGTGACTTAAATAAAAACTTTTGAAT
1 AATTTAGTGACTTAAATAAAAACTTTCAAAT
* *
80750053 AGTTTAGTGACTTAAATGAAAACTTTCAAAT
1 AATTTAGTGACTTAAATAAAAACTTTCAAAT
80750084 AATTTAGTGAC
1 AATTTAGTGAC
80750095 CAAATTATAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.42, C:0.10, G:0.12, T:0.36
Consensus pattern (31 bp):
AATTTAGTGACTTAAATAAAAACTTTCAAAT
Done.