Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 249 of 255
Found at i:80750671 original size:20 final size:20
Alignment explanation
Indices: 80750643--80750688 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
80750633 AAACAATAGC
*
80750643 AAAATAGCAACAAAACAGGA
1 AAAAAAGCAACAAAACAGGA
* * *
80750663 AAAAAAGCAATAAAATAGTA
1 AAAAAAGCAACAAAACAGGA
80750683 AAAAAA
1 AAAAAA
80750689 TAACAATTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.72, C:0.09, G:0.11, T:0.09
Consensus pattern (20 bp):
AAAAAAGCAACAAAACAGGA
Found at i:80751383 original size:5 final size:5
Alignment explanation
Indices: 80751373--80751399 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
80751363 AACTAGTAAT
80751373 AATAA AATAA AATAA AATAA AATAA AA
1 AATAA AATAA AATAA AATAA AATAA AA
80751400 CTCAACTAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:80757368 original size:26 final size:26
Alignment explanation
Indices: 80757329--80757436 Score: 162
Period size: 26 Copynumber: 4.2 Consensus size: 26
80757319 TGGTACAAAT
80757329 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
80757355 TGTTAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
80757381 TGATAATGGGTTAGGTACATGTTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
80757407 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80757433 TGAT
1 TGAT
80757437 GGGCATTTCA
Statistics
Matches: 71, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 71 1.00
ACGTcount: A:0.31, C:0.07, G:0.24, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:80761688 original size:16 final size:16
Alignment explanation
Indices: 80761643--80761691 Score: 55
Period size: 16 Copynumber: 3.0 Consensus size: 16
80761633 CTAAGTGATT
80761643 TTATTTTATTAAA-AATA
1 TTATTTT-TTAAATAA-A
* *
80761660 TTATATTTGAAATAAA
1 TTATTTTTTAAATAAA
80761676 TTATTTTTTAAATAAA
1 TTATTTTTTAAATAAA
80761692 ATAAGATATT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
16 19 0.70
17 8 0.30
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (16 bp):
TTATTTTTTAAATAAA
Found at i:80762063 original size:18 final size:18
Alignment explanation
Indices: 80762036--80762074 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
80762026 TATATCTCTT
*
80762036 ATATATATATATTATAAA
1 ATATAAATATATTATAAA
* *
80762054 ATATAAATATTTTTTAAA
1 ATATAAATATATTATAAA
80762072 ATA
1 ATA
80762075 ATATAAATGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
ATATAAATATATTATAAA
Found at i:80772563 original size:18 final size:17
Alignment explanation
Indices: 80772531--80772568 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
80772521 AAAGAAGAAG
*
80772531 AAATTAAAAATATTTTT
1 AAATTAAAAATATTTAT
80772548 AAATTAAAAATAATTTAT
1 AAATTAAAAAT-ATTTAT
80772566 AAA
1 AAA
80772569 CATTTTAAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
AAATTAAAAATATTTAT
Found at i:80776618 original size:59 final size:59
Alignment explanation
Indices: 80776553--80776740 Score: 141
Period size: 59 Copynumber: 3.2 Consensus size: 59
80776543 ATTTTATTAA
80776553 ATCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTTATAGT
* * ** * * * ** * * * *
80776612 ATCATATATTATGATTTTAGTA-AATTCATA-TAAGAATATTGATTATTAGAATTTTATTA-A
1 ATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCA-AATTA-TATTTTA-TAGT
* * * * *
80776672 ATTATATATTTTAATTAAAATATTTTTAATAATT-ATTATTTTAATTTATATTTTACAGT
1 ATCATATATTTTAATTAAAATATATTTAAT-ATTAATTATTTCAAATTATATTTTATAGT
80776731 ATCATATATT
1 ATCATATATT
80776741 ATGATTTGAG
Statistics
Matches: 90, Mismatches: 31, Indels: 16
0.66 0.23 0.12
Matches are distributed among these distances:
57 5 0.06
58 10 0.11
59 36 0.40
60 25 0.28
61 9 0.10
62 4 0.04
63 1 0.01
ACGTcount: A:0.41, C:0.03, G:0.04, T:0.52
Consensus pattern (59 bp):
ATCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTTATAGT
Found at i:80776667 original size:119 final size:120
Alignment explanation
Indices: 80776542--80776830 Score: 483
Period size: 119 Copynumber: 2.4 Consensus size: 120
80776532 AATTATTTTA
*
80776542 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTT
* * *
80776607 ATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATT-AG
66 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* * *
80776661 AATTTTATTAAATTATATATTTTAATTAAAATATTTTTAATAATT-ATTATTTTAATTTATATTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAAT-ATTAATTATTTCAAATTATATTT
80776725 TACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
65 TACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
80776781 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTAT
80776831 GTTTAAATAT
Statistics
Matches: 158, Mismatches: 9, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
119 108 0.68
120 50 0.32
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTT
ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:80776688 original size:18 final size:18
Alignment explanation
Indices: 80776662--80776717 Score: 63
Period size: 15 Copynumber: 3.5 Consensus size: 18
80776652 GATTATTAGA
80776662 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAATTATAT
80776679 ATTTTAATTAAA--ATAT
1 ATTTTAATTAAATTATAT
80776695 -TTTTAA-T-AATTAT-T
1 ATTTTAATTAAATTATAT
80776709 ATTTTAATT
1 ATTTTAATT
80776718 TATATTTTAC
Statistics
Matches: 34, Mismatches: 0, Indels: 11
0.76 0.00 0.24
Matches are distributed among these distances:
13 2 0.06
14 2 0.06
15 14 0.41
16 5 0.15
17 5 0.15
18 6 0.18
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (18 bp):
ATTTTAATTAAATTATAT
Found at i:80776798 original size:59 final size:58
Alignment explanation
Indices: 80776616--80776798 Score: 137
Period size: 56 Copynumber: 3.1 Consensus size: 58
80776606 TATAGTATCA
*
80776616 TATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATT-AGAATTTTATTAAAT
1 TATATTATGATTTAAGTAAATTCATATAAGAATATT-ATTATTAAGAATTTTATTAAAT
* * * * * * *
80776674 TATA-TAT--TTTAATTAAAATAT-TTTTAATAATTATTATT-TTAATTTATATTTTA-CAGTAT
1 TATATTATGATTTAAGT-AAAT-TCATATAAGAA-TATTATTATTAA--GA-ATTTTATTA-AAT
*
80776733 CATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
1 --TATATTATGATTTAAGTAAATTCATATAAGAATATT-ATTATTAAGAATTTTATTAAAT
80776794 TATAT
1 TATAT
80776799 ATTTTAATTA
Statistics
Matches: 92, Mismatches: 16, Indels: 33
0.65 0.11 0.23
Matches are distributed among these distances:
55 7 0.08
56 14 0.15
57 8 0.09
58 6 0.07
59 13 0.14
61 12 0.13
62 10 0.11
63 13 0.14
64 9 0.10
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.50
Consensus pattern (58 bp):
TATATTATGATTTAAGTAAATTCATATAAGAATATTATTATTAAGAATTTTATTAAAT
Found at i:80776810 original size:18 final size:17
Alignment explanation
Indices: 80776782--80776816 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
80776772 ATTATTAAGA
*
80776782 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
80776799 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
80776817 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:80776926 original size:147 final size:149
Alignment explanation
Indices: 80776770--80777044 Score: 500
Period size: 147 Copynumber: 1.9 Consensus size: 149
80776760 ATAAGAATAT
*
80776770 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
80776835 AAATATGAGTAAATTATTTATTATTGAT-ATTAATAATCTTATTAAAATTTAAATAA-AATAATT
66 AAATATGAGTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAATT
80776898 TACCAAAACAAATTTCTGC
131 TACCAAAACAAATTTCTGC
80776917 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
* *
80776982 AAATATGATTAAATTATTTATTTTTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
66 AAATATGAGTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
80777045 CAATAATCAT
Statistics
Matches: 122, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
147 90 0.74
148 27 0.22
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.04, T:0.46
Consensus pattern (149 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
AAATATGAGTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAATT
TACCAAAACAAATTTCTGC
Found at i:80776957 original size:18 final size:17
Alignment explanation
Indices: 80776929--80776963 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
80776919 ATTATTAAGA
*
80776929 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
80776946 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
80776964 TAAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:80777174 original size:44 final size:45
Alignment explanation
Indices: 80777125--80777219 Score: 129
Period size: 45 Copynumber: 2.1 Consensus size: 45
80777115 TTACACCTCT
* * *
80777125 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACATCTATTCC
** *
80777169 ATTACATTCAACCAAACAGTTGATTTGCTATTACACATCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACATCTATTCC
80777214 ATTACA
1 ATTACA
80777220 CCTCTAATCC
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 18 0.41
45 26 0.59
ACGTcount: A:0.34, C:0.26, G:0.05, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACATCTATTCC
Found at i:80777219 original size:16 final size:16
Alignment explanation
Indices: 80777200--80777251 Score: 77
Period size: 16 Copynumber: 3.2 Consensus size: 16
80777190 GATTTGCTAT
* * *
80777200 TACACATCTATTCCAT
1 TACACCTCTAATCCAA
80777216 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
80777232 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
80777248 TACA
1 TACA
80777252 GCGAACCAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.37, C:0.35, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:80790518 original size:79 final size:79
Alignment explanation
Indices: 80790387--80790553 Score: 244
Period size: 79 Copynumber: 2.1 Consensus size: 79
80790377 GATGCCACCA
** * * *
80790387 AACTCCCTCAAGTCTTCTTTTAGTTTGCCCATTCCTCCATTACGTCAAATTTTCCTATCTTCATC
1 AACTCCCTCAAGTCCCCTTTCAGTTCGCCCATTCCTCCATTACGCCAAATTTTCCTATCTTCATC
*
80790452 TAACCCGTTAAAGT
66 TAACCCGTCAAAGT
* * *
80790466 AACTCCCTCGAGTCCCCTTTCAGTTCGTCCATTCCTCCATTATGCCAAATTTTCCTATCTTCATC
1 AACTCCCTCAAGTCCCCTTTCAGTTCGCCCATTCCTCCATTACGCCAAATTTTCCTATCTTCATC
*
80790531 TAACCTGTCAAAGT
66 TAACCCGTCAAAGT
80790545 AACTCCCTC
1 AACTCCCTC
80790554 TGTACTCCGC
Statistics
Matches: 78, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
79 78 1.00
ACGTcount: A:0.22, C:0.34, G:0.08, T:0.37
Consensus pattern (79 bp):
AACTCCCTCAAGTCCCCTTTCAGTTCGCCCATTCCTCCATTACGCCAAATTTTCCTATCTTCATC
TAACCCGTCAAAGT
Found at i:80804167 original size:19 final size:20
Alignment explanation
Indices: 80804143--80804180 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
80804133 ATTGTTTGGA
80804143 TATTGTATAA-AA-CTTATTT
1 TATTGT-TAATAATCTTATTT
80804162 TATTGTTAATAATCTTATT
1 TATTGTTAATAATCTTATT
80804181 ATTTTAAAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 3 0.18
19 8 0.47
20 6 0.35
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.55
Consensus pattern (20 bp):
TATTGTTAATAATCTTATTT
Found at i:80805101 original size:16 final size:15
Alignment explanation
Indices: 80805080--80805127 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
80805070 GATGTGAATA
80805080 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
80805096 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
80805111 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
80805127 A
1 A
80805128 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:80805103 original size:24 final size:24
Alignment explanation
Indices: 80805076--80805131 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
80805066 TAATGATGTG
*
80805076 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
* *
80805100 AATATTAAAATATCAAAATATTAG
1 AATAATAAAATATCAAAATATTAA
80805124 AATAATAA
1 AATAATAA
80805132 TAATTAATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:80805110 original size:8 final size:8
Alignment explanation
Indices: 80805076--80805127 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
80805066 TAATGATGTG
*
80805076 AATAATAA
1 AATATTAA
80805084 AATATATAA
1 AATAT-TAA
80805093 AATA-TAA
1 AATATTAA
80805100 AATATTAA
1 AATATTAA
*
80805108 AATATCAA
1 AATATTAA
*
80805116 AATATTAG
1 AATATTAA
80805124 AATA
1 AATA
80805128 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:80805346 original size:22 final size:24
Alignment explanation
Indices: 80805283--80805347 Score: 80
Period size: 25 Copynumber: 2.8 Consensus size: 24
80805273 CGTGATAATA
*
80805283 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAG-G
*
80805308 TTAAAAATACATACATAATATA-G
1 TTAAAAATATATACATAATATAGG
*
80805331 TT-AAGATATATACATAA
1 TTAAAAATATATACATAA
80805348 GATAACATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 13 0.36
23 3 0.08
25 20 0.56
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (24 bp):
TTAAAAATATATACATAATATAGG
Found at i:80805475 original size:22 final size:23
Alignment explanation
Indices: 80805438--80805496 Score: 68
Period size: 22 Copynumber: 2.6 Consensus size: 23
80805428 ATAGAATTTA
*
80805438 AAATATACCTAATATATTA-AAAG
1 AAATATA-ATAATATATTATAAAG
*
80805461 AACATAT-ATAATATATTATTAAG
1 AA-ATATAATAATATATTATAAAG
80805484 AAATATAATAATA
1 AAATATAATAATA
80805497 ACAAAAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
22 14 0.45
23 13 0.42
24 4 0.13
ACGTcount: A:0.58, C:0.05, G:0.03, T:0.34
Consensus pattern (23 bp):
AAATATAATAATATATTATAAAG
Found at i:80806072 original size:30 final size:30
Alignment explanation
Indices: 80806038--80806106 Score: 129
Period size: 30 Copynumber: 2.3 Consensus size: 30
80806028 TGGAGCAAGT
80806038 GTGGCTAGTGGAGTTGGTGGTGGAAAAGGA
1 GTGGCTAGTGGAGTTGGTGGTGGAAAAGGA
*
80806068 GTGGCTAGTGGAGTTGGTGGTGGAAAAGGT
1 GTGGCTAGTGGAGTTGGTGGTGGAAAAGGA
80806098 GTGGCTAGT
1 GTGGCTAGT
80806107 TGAGAAAAGT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.20, C:0.04, G:0.49, T:0.26
Consensus pattern (30 bp):
GTGGCTAGTGGAGTTGGTGGTGGAAAAGGA
Found at i:80806817 original size:14 final size:14
Alignment explanation
Indices: 80806798--80806847 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
80806788 GAGTTGATTT
* *
80806798 TTGAAAAATATAAA
1 TTGAAAAACAGAAA
80806812 TTGAAAAAACAGAAA
1 TTG-AAAAACAGAAA
*
80806827 TTGAAAAGCAGAAA
1 TTGAAAAACAGAAA
80806841 TT-AAAAA
1 TTGAAAAA
80806848 GACCTCAGCA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
13 4 0.13
14 15 0.48
15 12 0.39
ACGTcount: A:0.64, C:0.04, G:0.12, T:0.20
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:80806960 original size:73 final size:73
Alignment explanation
Indices: 80806827--80807070 Score: 292
Period size: 73 Copynumber: 3.3 Consensus size: 73
80806817 AAAACAGAAA
* * **
80806827 TTGA-AAAGCAGAAATTAAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATA
1 TTGACAAA-CAGAAATTGAAAATACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAATA
80806891 TGAGTTAATTT
63 TGAGTTAATTT
* * *
80806902 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTTTCGCAATATAA
1 TTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
*
80806967 GTTGATTT
66 GTTAATTT
* * * *
80806975 TTGAAAAAAAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGACAAACAGAAA-TTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
*
80807040 AGTTGATTTTTT
65 AGTT-A--ATTT
*
80807052 TTTACAAACAGAAATTGAA
1 TTGACAAACAGAAATTGAA
80807071 GAACAGAAAT
Statistics
Matches: 143, Mismatches: 21, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
73 50 0.35
74 49 0.34
75 23 0.16
76 7 0.05
77 14 0.10
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.28
Consensus pattern (73 bp):
TTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTAATTT
Found at i:80807027 original size:74 final size:72
Alignment explanation
Indices: 80806827--80807050 Score: 304
Period size: 74 Copynumber: 3.0 Consensus size: 72
80806817 AAAACAGAAA
* * *
80806827 TTGAAAAGCAGAAATTAAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTAAAAATACCTCAGC--GTG-TCCGAGGCTCAACTCACCTCTCGCAATAT
*
80806892 GAGTTAATTT
63 GAGTTGATTT
* * * * *
80806902 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTTTCGCAATATAA
1 TTGAAAAACAGAAATTAAAAATACCTCAGCGTGT-CCGAGGCTCAACTCACCTCTCGCAATATGA
80806967 GTTGATTT
65 GTTGATTT
*
80806975 TTGAAAAAAAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAA-TTAAAAATACCTCAGCGTGTCC-GAGGCTCAACTCACCTCTCGCAATATG
80807040 AGTTGATTT
64 AGTTGATTT
80807049 TT
1 TT
80807051 TTTTACAAAC
Statistics
Matches: 131, Mismatches: 15, Indels: 7
0.86 0.10 0.05
Matches are distributed among these distances:
73 52 0.40
74 54 0.41
75 25 0.19
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (72 bp):
TTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTT
Found at i:80807077 original size:14 final size:14
Alignment explanation
Indices: 80807058--80807084 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
80807048 TTTTTTTACA
80807058 AACAGAAATTGAAG
1 AACAGAAATTGAAG
80807072 AACAGAAATTGAA
1 AACAGAAATTGAA
80807085 AAGACCTCAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.07, G:0.19, T:0.15
Consensus pattern (14 bp):
AACAGAAATTGAAG
Found at i:80807190 original size:54 final size:55
Alignment explanation
Indices: 80807106--80807213 Score: 155
Period size: 54 Copynumber: 2.0 Consensus size: 55
80807096 ATGTGAGCCG
* * * *
80807106 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACA-AACAGAAATTAAA
1 AGGCTCAACTCACCTCTCGCAACATAAGTTGATTTTTGAAACAACAAAAATTAAA
* *
80807160 AGGCTTAACTCACTTCTCGCAACATAAGTTGATTTTTGAAACAACAAAAATTAA
1 AGGCTCAACTCACCTCTCGCAACATAAGTTGATTTTTGAAACAACAAAAATTAA
80807214 GAATACCTCA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
54 36 0.77
55 11 0.23
ACGTcount: A:0.39, C:0.19, G:0.13, T:0.29
Consensus pattern (55 bp):
AGGCTCAACTCACCTCTCGCAACATAAGTTGATTTTTGAAACAACAAAAATTAAA
Found at i:80807386 original size:127 final size:127
Alignment explanation
Indices: 80807072--80807415 Score: 462
Period size: 128 Copynumber: 2.7 Consensus size: 127
80807062 GAAATTGAAG
*
80807072 AACAGAAATTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AACAGAAATTGAAAATACCTCAGC--GTGA-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * * *
80807136 GATTTTTGACAAACAGAAATTAAAAGGCTTAACTCACTTCTCGCAACATAAGTTGATTTTTGAAA
63 GA-TTTTGAAAAACAGAAATTAAAAGGCTTAACCCACCTCTCGCAACATAAGTTGATTCTTGAAA
80807201 C
127 C
* *
80807202 AACAAAAATT-AAGAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA
1 AACAGAAATTGAA-AATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* * * *
80807266 TTTTGAAAAAGTAGAAATTAAAAGG-TTCAACCCACCTCTCGCAATATGAGTTGATTCTTGACA-
65 TTTTGAAAAA-CAGAAATTAAAAGGCTT-AACCCACCTCTCGCAACATAAGTTGATTCTTGAAAC
* * *
80807329 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
80807394 TTTGAAAAACAAAAATTAAAAG
66 TTTGAAAAACAGAAATTAAAAG
80807416 TATCTCAACG
Statistics
Matches: 191, Mismatches: 18, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
126 11 0.06
127 79 0.41
128 80 0.42
129 2 0.01
130 19 0.10
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.26
Consensus pattern (127 bp):
AACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTGAAAAACAGAAATTAAAAGGCTTAACCCACCTCTCGCAACATAAGTTGATTCTTGAAAC
Found at i:80807442 original size:72 final size:72
Alignment explanation
Indices: 80807292--80807468 Score: 255
Period size: 72 Copynumber: 2.4 Consensus size: 72
80807282 ATTAAAAGGT
* * * * * *
80807292 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCAGCGTGT
1 TCAACTCACCTCTCGCAATATGAGTTGATT-TTGAAAAACAAAAATTAAAAGTACCTCAACGTGT
80807357 CCTGAGGC
65 CCTGAGGC
* *
80807365 TCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGTATCTCAACGTGTC
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGTACCTCAACGTGTC
*
80807430 TTGAGGC
66 CTGAGGC
*
80807437 TCAACTCATCTCTCGCAATATGAGTTGATTTT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTT
80807469 CCTTGAAAAG
Statistics
Matches: 93, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
72 65 0.70
73 28 0.30
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (72 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGTACCTCAACGTGTC
CTGAGGC
Found at i:80811410 original size:6 final size:7
Alignment explanation
Indices: 80811394--80811420 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
80811384 GAGTGGAAAG
80811394 AAAATTA
1 AAAATTA
80811401 AAAATTA
1 AAAATTA
80811408 AAAATTA
1 AAAATTA
80811415 AAAATT
1 AAAATT
80811421 GAAGGGGTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (7 bp):
AAAATTA
Found at i:80827467 original size:19 final size:18
Alignment explanation
Indices: 80827431--80827469 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
80827421 GTTTTTCTTA
* *
80827431 TAGATTAAGTTATTTTAT
1 TAGAATAAGTTATATTAT
80827449 TAGAATAAGATTATATTAT
1 TAGAATAAG-TTATATTAT
80827468 TA
1 TA
80827470 ATATTATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (18 bp):
TAGAATAAGTTATATTAT
Found at i:80828408 original size:47 final size:47
Alignment explanation
Indices: 80828344--80828454 Score: 145
Period size: 47 Copynumber: 2.4 Consensus size: 47
80828334 GACATTGAGT
* *
80828344 CGATG-AGACACTATGTGT-CGACTACTGTTAAAGTTCCGGATTTGTTC
1 CGATGAAG-CACTATGTGTACGA-TAATGTTAAAGTTCCGGATTTATTC
* * *
80828391 CGATGAAGTACTTTGTGTACTATAATGTTAAAGTTCCGGATTTATTC
1 CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTATTC
80828438 CGATGAAGCACTATGTG
1 CGATGAAGCACTATGTG
80828455 CTTATCCCGG
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
47 51 0.93
48 4 0.07
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (47 bp):
CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTATTC
Found at i:80831245 original size:106 final size:106
Alignment explanation
Indices: 80831128--80831335 Score: 321
Period size: 106 Copynumber: 2.0 Consensus size: 106
80831118 TCTCCGTATT
*
80831128 AAAAAATACTTTTAGG-TTAAAAATGTTTTCCATCGTAAAAGTAACGAAGAACATTTAGCTTTTA
1 AAAAAACACTTTT-GGATTAAAAATGTTTTCCATCGTAAAAGTAACGAAGAACATTTAGCTTTTA
80831192 CCGTTAAAAGTGCGGTTAAAAAG-ATTTTTTCCACCCAACTTG
65 CCGTTAAAAGTGCGGTT-AAAAGTATTTTTTCCACCCAACTTG
* * * *
80831234 AAAAAACACTTTTGGATTAAAAGTGTTTTCTATCGTAAAAGTAATGAAGAACATTTAGCTTTTGC
1 AAAAAACACTTTTGGATTAAAAATGTTTTCCATCGTAAAAGTAACGAAGAACATTTAGCTTTTAC
* *
80831299 CGTTAAAAGTGCGGTTAAACGTTTTTTTTCCACCCAA
66 CGTTAAAAGTGCGGTTAAAAGTATTTTTTCCACCCAA
80831336 ACTCAAAGCT
Statistics
Matches: 93, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
105 6 0.06
106 87 0.94
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Consensus pattern (106 bp):
AAAAAACACTTTTGGATTAAAAATGTTTTCCATCGTAAAAGTAACGAAGAACATTTAGCTTTTAC
CGTTAAAAGTGCGGTTAAAAGTATTTTTTCCACCCAACTTG
Found at i:80834071 original size:10 final size:10
Alignment explanation
Indices: 80834058--80834090 Score: 50
Period size: 9 Copynumber: 3.3 Consensus size: 10
80834048 ATTTTTACGA
80834058 TTTTTAAAA-
1 TTTTTAAAAT
80834067 TTTTTAAAAT
1 TTTTTAAAAT
80834077 TTTTTATAAAT
1 TTTTTA-AAAT
80834088 TTT
1 TTT
80834091 AAATTATTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 9 0.41
10 6 0.27
11 7 0.32
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (10 bp):
TTTTTAAAAT
Found at i:80835934 original size:15 final size:15
Alignment explanation
Indices: 80835914--80835942 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
80835904 GTCCGACCCT
80835914 TTAAAATAAATAAAA
1 TTAAAATAAATAAAA
80835929 TTAAAATAAATAAA
1 TTAAAATAAATAAA
80835943 GGTAAATACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (15 bp):
TTAAAATAAATAAAA
Found at i:80835948 original size:15 final size:15
Alignment explanation
Indices: 80835915--80835948 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
80835905 TCCGACCCTT
*
80835915 TAAAATAAATAAAAT
1 TAAAATAAATAAAAG
*
80835930 TAAAATAAATAAAGG
1 TAAAATAAATAAAAG
80835945 TAAA
1 TAAA
80835949 TACTTTCAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.24
Consensus pattern (15 bp):
TAAAATAAATAAAAG
Found at i:80836715 original size:4 final size:4
Alignment explanation
Indices: 80836708--80836740 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
80836698 GTGTGAATGA
80836708 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT A
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT A
80836741 CCCTTTTAGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.48
Consensus pattern (4 bp):
ATGT
Found at i:80839163 original size:2 final size:2
Alignment explanation
Indices: 80839152--80839183 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
80839142 GTCAATACAT
80839152 AC AC AC -C AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
80839184 TAAATATACC
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:80840093 original size:37 final size:37
Alignment explanation
Indices: 80840052--80840126 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
80840042 AAGTACAAGG
80840052 AGATTGATGTTAAAAAACCAAATGTCTATGGAGGATA
1 AGATTGATGTTAAAAAACCAAATGTCTATGGAGGATA
80840089 AGATTGATGTTAAAAAACCAAATGTCTATGGAGGATA
1 AGATTGATGTTAAAAAACCAAATGTCTATGGAGGATA
80840126 A
1 A
80840127 AAAGATGAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.44, C:0.08, G:0.21, T:0.27
Consensus pattern (37 bp):
AGATTGATGTTAAAAAACCAAATGTCTATGGAGGATA
Found at i:80842095 original size:16 final size:16
Alignment explanation
Indices: 80842049--80842097 Score: 55
Period size: 16 Copynumber: 3.0 Consensus size: 16
80842039 TACAAATTAA
80842049 AAATAATTATAAAAGAAT
1 AAATAA-TATAAAA-AAT
* *
80842067 -AATTATATTAAAAAT
1 AAATAATATAAAAAAT
80842082 AAATAATATAAAAAAT
1 AAATAATATAAAAAAT
80842098 TTCAATATGG
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
15 3 0.12
16 19 0.73
17 4 0.15
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (16 bp):
AAATAATATAAAAAAT
Found at i:80843449 original size:18 final size:18
Alignment explanation
Indices: 80843423--80843459 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
80843413 ATTGAGAATT
80843423 TTTATAAA-TATTTTGAA
1 TTTATAAATTATTTTGAA
80843440 TTTATGAAATTATTTTGAA
1 TTTAT-AAATTATTTTGAA
80843459 T
1 T
80843460 ACTTTTTTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 5 0.28
18 3 0.17
19 10 0.56
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (18 bp):
TTTATAAATTATTTTGAA
Found at i:80846077 original size:19 final size:20
Alignment explanation
Indices: 80846055--80846097 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
80846045 TTAAAATTTT
80846055 TAAAAATA-TTAAAAAATTA
1 TAAAAATATTTAAAAAATTA
*
80846074 TAAAAATATTTTAAAAATTA
1 TAAAAATATTTAAAAAATTA
80846094 -AAAA
1 TAAAA
80846098 TTATAAAAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 12 0.55
20 10 0.45
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (20 bp):
TAAAAATATTTAAAAAATTA
Found at i:80846091 original size:11 final size:11
Alignment explanation
Indices: 80846047--80846091 Score: 53
Period size: 10 Copynumber: 4.5 Consensus size: 11
80846037 CTATTTCTTT
80846047 AAAAT-TTTTA
1 AAAATATTTTA
80846057 AAAATA--TTA
1 AAAATATTTTA
*
80846066 AAAA-ATTATA
1 AAAATATTTTA
80846076 AAAATATTTTA
1 AAAATATTTTA
80846087 AAAAT
1 AAAAT
80846092 TAAAAATTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
8 1 0.03
9 7 0.24
10 11 0.38
11 10 0.34
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (11 bp):
AAAATATTTTA
Found at i:80851055 original size:14 final size:16
Alignment explanation
Indices: 80851023--80851059 Score: 53
Period size: 14 Copynumber: 2.5 Consensus size: 16
80851013 TTTAAAAAAT
80851023 ATTT-ATATTATATTA
1 ATTTAATATTATATTA
80851038 ATTTAATATTA-A-TA
1 ATTTAATATTATATTA
80851052 ATTTAATA
1 ATTTAATA
80851060 ATTTTTTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 10 0.48
15 5 0.24
16 6 0.29
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
ATTTAATATTATATTA
Found at i:80851773 original size:48 final size:48
Alignment explanation
Indices: 80851702--80851798 Score: 194
Period size: 48 Copynumber: 2.0 Consensus size: 48
80851692 TTTAAAAGAA
80851702 AATCAAACATATCCGTATCAAACACATACTGAACTCAAGATTTTTCAT
1 AATCAAACATATCCGTATCAAACACATACTGAACTCAAGATTTTTCAT
80851750 AATCAAACATATCCGTATCAAACACATACTGAACTCAAGATTTTTCAT
1 AATCAAACATATCCGTATCAAACACATACTGAACTCAAGATTTTTCAT
80851798 A
1 A
80851799 CTTTTTGCAG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.42, C:0.23, G:0.06, T:0.29
Consensus pattern (48 bp):
AATCAAACATATCCGTATCAAACACATACTGAACTCAAGATTTTTCAT
Found at i:80860526 original size:9 final size:9
Alignment explanation
Indices: 80860512--80860536 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
80860502 GAAACATTTA
80860512 TTTTAATAT
1 TTTTAATAT
80860521 TTTTAATAT
1 TTTTAATAT
80860530 TTTTAAT
1 TTTTAAT
80860537 GTATTATATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (9 bp):
TTTTAATAT
Found at i:80861313 original size:16 final size:16
Alignment explanation
Indices: 80861292--80861330 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
80861282 GAACTTTGAT
80861292 AATATAAGGTTTTACA
1 AATATAAGGTTTTACA
80861308 AATATAAGGTTTTACA
1 AATATAAGGTTTTACA
80861324 AAT-TAAG
1 AATATAAG
80861331 CATGCAAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 4 0.17
16 19 0.83
ACGTcount: A:0.46, C:0.05, G:0.13, T:0.36
Consensus pattern (16 bp):
AATATAAGGTTTTACA
Found at i:80869346 original size:3 final size:3
Alignment explanation
Indices: 80869338--80869369 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
80869328 ACACCTTTTA
80869338 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
80869370 ATAAAACATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:80869680 original size:47 final size:49
Alignment explanation
Indices: 80869577--80869696 Score: 136
Period size: 47 Copynumber: 2.5 Consensus size: 49
80869567 CTTATAACTT
*
80869577 AATTAGGATTAAGAAAATTATATTTTATAAATATATATTAGTTAGAATTG
1 AATTAGGATTAAGAAAATTATATTTTAT-AATATATATTAGCTAGAATTG
* * * * *
80869627 ATTTAGGATTACGGAATTTATA-TTTAT-ATATATCTTAGCTAGAATTG
1 AATTAGGATTAAGAAAATTATATTTTATAATATATATTAGCTAGAATTG
* * *
80869674 AATTAGGGTCACGAAAATTATAT
1 AATTAGGATTAAGAAAATTATAT
80869697 ATAGAGTTCA
Statistics
Matches: 58, Mismatches: 11, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
47 35 0.60
49 5 0.09
50 18 0.31
ACGTcount: A:0.41, C:0.04, G:0.14, T:0.41
Consensus pattern (49 bp):
AATTAGGATTAAGAAAATTATATTTTATAATATATATTAGCTAGAATTG
Found at i:80873241 original size:18 final size:17
Alignment explanation
Indices: 80873202--80873247 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
80873192 ATAATTGTGA
*
80873202 ATTAAATTATAATTATT
1 ATTAAATTATAATTAAT
* *
80873219 TTTAAATGTGTAATTAAT
1 ATTAAAT-TATAATTAAT
80873237 ATTAAATTATA
1 ATTAAATTATA
80873248 TTTTTTAAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
17 9 0.39
18 14 0.61
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (17 bp):
ATTAAATTATAATTAAT
Found at i:80873597 original size:43 final size:44
Alignment explanation
Indices: 80873536--80873631 Score: 142
Period size: 43 Copynumber: 2.2 Consensus size: 44
80873526 AAAATTATAT
* * * *
80873536 TTTATAAATATATATTAGTTAGAATTGATTTAGTATTACG-AAA
1 TTTATATATATATATTAGTTAGAATTGAATTAGGATCACGTAAA
80873579 TTTATATATATATATTAGTTAGAATTGAATTAGGATCACGTAAA
1 TTTATATATATATATTAGTTAGAATTGAATTAGGATCACGTAAA
80873623 -TTATATATA
1 TTTATATATA
80873632 GAGTTCAATA
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
43 45 0.94
44 3 0.06
ACGTcount: A:0.42, C:0.03, G:0.11, T:0.44
Consensus pattern (44 bp):
TTTATATATATATATTAGTTAGAATTGAATTAGGATCACGTAAA
Found at i:80885111 original size:15 final size:15
Alignment explanation
Indices: 80885091--80885130 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
80885081 TTATTATTAT
80885091 TTATTTTTAATATAA
1 TTATTTTTAATATAA
**
80885106 TTATTTTTTTTATAA
1 TTATTTTTAATATAA
80885121 TTATTCTTTA
1 TTATT-TTTA
80885131 TTCATAAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
15 18 0.86
16 3 0.14
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.68
Consensus pattern (15 bp):
TTATTTTTAATATAA
Found at i:80889664 original size:15 final size:16
Alignment explanation
Indices: 80889644--80889676 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
80889634 ACTAAAGATT
80889644 TTAATTACTTT-TATA
1 TTAATTACTTTATATA
80889659 TTAATTACTTTATATA
1 TTAATTACTTTATATA
80889675 TT
1 TT
80889677 TAGTTTAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.65
16 6 0.35
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (16 bp):
TTAATTACTTTATATA
Found at i:80890103 original size:21 final size:18
Alignment explanation
Indices: 80890079--80890122 Score: 52
Period size: 21 Copynumber: 2.3 Consensus size: 18
80890069 TTACACGTTC
80890079 TGTAATTTGACTATTTTCTTT
1 TGTAATTT--CTATTTTC-TT
*
80890100 TGTAATTTTTATTTTCTT
1 TGTAATTTCTATTTTCTT
80890118 TGTAA
1 TGTAA
80890123 CATTGAAGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 7 0.32
19 7 0.32
21 8 0.36
ACGTcount: A:0.20, C:0.07, G:0.09, T:0.64
Consensus pattern (18 bp):
TGTAATTTCTATTTTCTT
Found at i:80891127 original size:60 final size:59
Alignment explanation
Indices: 80891030--80891143 Score: 201
Period size: 60 Copynumber: 1.9 Consensus size: 59
80891020 AATGAATTTT
80891030 TTAATTTAAAAAAATCAATATACTCTTAGATAATTTACTCTTTGATCCTTTTTGCAATA
1 TTAATTTAAAAAAATCAATATACTCTTAGATAATTTACTCTTTGATCCTTTTTGCAATA
* *
80891089 TTAATTTTAAAAAAATCAATCTACTCTTAGATAGTTTACTCTTTGATCCTTTTTG
1 TTAA-TTTAAAAAAATCAATATACTCTTAGATAATTTACTCTTTGATCCTTTTTG
80891144 TAATCTAACA
Statistics
Matches: 52, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
59 4 0.08
60 48 0.92
ACGTcount: A:0.34, C:0.14, G:0.06, T:0.46
Consensus pattern (59 bp):
TTAATTTAAAAAAATCAATATACTCTTAGATAATTTACTCTTTGATCCTTTTTGCAATA
Found at i:80896347 original size:24 final size:24
Alignment explanation
Indices: 80896314--80896361 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
80896304 TCAAATGAGA
* *
80896314 CTTTATTTTCAACATTTCCATTGT
1 CTTTAGTTTCAACAATTCCATTGT
*
80896338 CTTTAGTTTCAACAATTGCATTGT
1 CTTTAGTTTCAACAATTCCATTGT
80896362 TTTCATCAGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.23, C:0.19, G:0.08, T:0.50
Consensus pattern (24 bp):
CTTTAGTTTCAACAATTCCATTGT
Found at i:80903947 original size:25 final size:25
Alignment explanation
Indices: 80903918--80903970 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 25
80903908 CGCCCATATT
80903918 ATTTTAATTT-TT-AATAATTTTATAC
1 ATTTTAATTTATTGAA-AATTTTA-AC
*
80903943 ATTTTTATTTATTGAAAATTTTAAC
1 ATTTTAATTTATTGAAAATTTTAAC
80903968 ATT
1 ATT
80903971 ATTTTAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
25 14 0.56
26 9 0.36
27 2 0.08
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.58
Consensus pattern (25 bp):
ATTTTAATTTATTGAAAATTTTAAC
Found at i:80904049 original size:15 final size:16
Alignment explanation
Indices: 80904029--80904059 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
80904019 TCTAAATTAC
80904029 ATAACAT-ATATAAAA
1 ATAACATAATATAAAA
80904044 ATAACATAATATAAAA
1 ATAACATAATATAAAA
80904060 TATTATAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (16 bp):
ATAACATAATATAAAA
Found at i:80907902 original size:13 final size:13
Alignment explanation
Indices: 80907840--80907902 Score: 58
Period size: 13 Copynumber: 4.8 Consensus size: 13
80907830 CTCTGGCCCT
80907840 TAAATCTAAACCC
1 TAAATCTAAACCC
* *
80907853 TAAATTTTAAA-TC
1 TAAA-TCTAAACCC
*
80907866 TCAAATTTAAACCC
1 T-AAATCTAAACCC
80907880 TAAA-CTTAAACCC
1 TAAATC-TAAACCC
80907893 TAAATCTAAA
1 TAAATCTAAA
80907903 TTTTAAATTT
Statistics
Matches: 41, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
13 30 0.73
14 11 0.27
ACGTcount: A:0.48, C:0.22, G:0.00, T:0.30
Consensus pattern (13 bp):
TAAATCTAAACCC
Found at i:80913063 original size:107 final size:107
Alignment explanation
Indices: 80912877--80913091 Score: 403
Period size: 107 Copynumber: 2.0 Consensus size: 107
80912867 ACTCACAACT
* * *
80912877 TCCTACATTGACAACAATGTCGATGTAATTCAAGCTAAAATTTAATCATAATAACCATGCATAAG
1 TCCTAAATTGACAACAATGTCGATGCAATTCAAACTAAAATTTAATCATAATAACCATGCATAAG
80912942 TAATTATAAATTATTAGGCTACAAATCTAATTACTAAATGAG
66 TAATTATAAATTATTAGGCTACAAATCTAATTACTAAATGAG
80912984 TCCTAAATTGACAACAATGTCGATGCAATTCAAACTAAAATTTAATCATAATAACCATGCATAAG
1 TCCTAAATTGACAACAATGTCGATGCAATTCAAACTAAAATTTAATCATAATAACCATGCATAAG
80913049 TAATTATAAATTATTAGGCTACAAATCTAATTACTAAATGAG
66 TAATTATAAATTATTAGGCTACAAATCTAATTACTAAATGAG
80913091 T
1 T
80913092 TTTTAAATAC
Statistics
Matches: 105, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
107 105 1.00
ACGTcount: A:0.44, C:0.15, G:0.10, T:0.32
Consensus pattern (107 bp):
TCCTAAATTGACAACAATGTCGATGCAATTCAAACTAAAATTTAATCATAATAACCATGCATAAG
TAATTATAAATTATTAGGCTACAAATCTAATTACTAAATGAG
Found at i:80913338 original size:3 final size:3
Alignment explanation
Indices: 80913330--80913357 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
80913320 CAATCACTTC
80913330 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
80913358 ATTCATTACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:80916499 original size:67 final size:69
Alignment explanation
Indices: 80916415--80916557 Score: 159
Period size: 67 Copynumber: 2.1 Consensus size: 69
80916405 TAAGATTCAA
* * * *
80916415 TAAAATATATTTATAAAACCCTATAAAA-TTAAGAAATTGTAA-TAAAAATAT-ATAATA-TTTT
1 TAAAATATATTTATAAAACACTATAAAATTTAA-AAATTATAATTAAAAATATAAAAATAGTTAT
*
80916476 AATAT
65 AAAAT
* * * *
80916481 TAAAATATGTGTTATAAAATATTATAAAATTTAAAAATTATAATTTAAAATATAAAAATAGTTAT
1 TAAAATATAT-TTATAAAACACTATAAAATTTAAAAATTATAATTAAAAATATAAAAATAGTTAT
80916546 AAAAT
65 AAAAT
80916551 TAAAATA
1 TAAAATA
80916558 GTTGCATTTT
Statistics
Matches: 63, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
66 9 0.14
67 23 0.37
68 12 0.19
69 5 0.08
70 14 0.22
ACGTcount: A:0.57, C:0.02, G:0.03, T:0.38
Consensus pattern (69 bp):
TAAAATATATTTATAAAACACTATAAAATTTAAAAATTATAATTAAAAATATAAAAATAGTTATA
AAAT
Found at i:80916550 original size:19 final size:17
Alignment explanation
Indices: 80916496--80916555 Score: 57
Period size: 21 Copynumber: 3.2 Consensus size: 17
80916486 TATGTGTTAT
80916496 AAAATATTATAAAATTTA
1 AAAATATTATAAAA-TTA
*
80916514 AAAATTATAATTTAAAATATA
1 AAAA-TAT--TATAAAAT-TA
80916535 AAAATAGTTATAAAATTA
1 AAAATA-TTATAAAATTA
80916553 AAA
1 AAA
80916556 TAGTTGCATT
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
18 9 0.26
19 10 0.29
20 3 0.09
21 13 0.37
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (17 bp):
AAAATATTATAAAATTA
Found at i:80922165 original size:5 final size:5
Alignment explanation
Indices: 80922155--80922202 Score: 64
Period size: 5 Copynumber: 9.6 Consensus size: 5
80922145 AAGAAATTTT
80922155 TATTA TATTA TA-T- TATTA TATTA TATTATA TATTA TATTA TATTA TAT
1 TATTA TATTA TATTA TATTA TATTA TA-T-TA TATTA TATTA TATTA TAT
80922203 AAATAAGTAA
Statistics
Matches: 39, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
3 2 0.05
4 2 0.05
5 29 0.74
6 2 0.05
7 4 0.10
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATTA
Found at i:80922172 original size:13 final size:13
Alignment explanation
Indices: 80922154--80922195 Score: 77
Period size: 13 Copynumber: 3.3 Consensus size: 13
80922144 TAAGAAATTT
80922154 TTATTATATTATA
1 TTATTATATTATA
80922167 TTATTATATTATA
1 TTATTATATTATA
80922180 TTA-TATATTATA
1 TTATTATATTATA
80922192 TTAT
1 TTAT
80922196 ATTATATAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
12 12 0.43
13 16 0.57
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
TTATTATATTATA
Found at i:80924003 original size:51 final size:49
Alignment explanation
Indices: 80923923--80924061 Score: 144
Period size: 45 Copynumber: 2.9 Consensus size: 49
80923913 TTACTGATCA
* * * *
80923923 GGCAC-TTATGTGCCGACTACTATTACTGTTACCGTTACTGTTACCGATTC
1 GGCACTTTGTGTGTCGAATACTGTTACTGTTACCGTTACTGTT--CGATTC
80923973 GGCACTTTGTGTGTCGAATACTGTTACTGTTACCGTTA----TCGATTC
1 GGCACTTTGTGTGTCGAATACTGTTACTGTTACCGTTACTGTTCGATTC
* * * **
80924018 AGCACTTTGTGTGTTGAATACTGTTACTTTTACTATTACTGTTC
1 GGCACTTTGTGTGTCGAATACTGTTACTGTTACCGTTACTGTTC
80924062 TGGATTTGTT
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
45 39 0.52
47 1 0.01
49 2 0.03
50 5 0.07
51 28 0.37
ACGTcount: A:0.19, C:0.21, G:0.19, T:0.41
Consensus pattern (49 bp):
GGCACTTTGTGTGTCGAATACTGTTACTGTTACCGTTACTGTTCGATTC
Found at i:80924045 original size:45 final size:45
Alignment explanation
Indices: 80923946--80924050 Score: 156
Period size: 45 Copynumber: 2.3 Consensus size: 45
80923936 CGACTACTAT
* * *
80923946 TACTGTTACCGTTACTGTTACCGATTCGGCACTTTGTGTGTCGAA
1 TACTGTTACTGTTACCGTTACCGATTCAGCACTTTGTGTGTCGAA
* *
80923991 TACTGTTACTGTTACCGTTATCGATTCAGCACTTTGTGTGTTGAA
1 TACTGTTACTGTTACCGTTACCGATTCAGCACTTTGTGTGTCGAA
*
80924036 TACTGTTACTTTTAC
1 TACTGTTACTGTTAC
80924051 TATTACTGTT
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 54 1.00
ACGTcount: A:0.19, C:0.20, G:0.19, T:0.42
Consensus pattern (45 bp):
TACTGTTACTGTTACCGTTACCGATTCAGCACTTTGTGTGTCGAA
Found at i:80924504 original size:18 final size:18
Alignment explanation
Indices: 80924224--80924523 Score: 192
Period size: 18 Copynumber: 16.3 Consensus size: 18
80924214 AAAGGTATAA
* * *
80924224 AATAACTGATTATTTCTG
1 AATAATTGATTGTTACTG
* *
80924242 AATAATTGACTGTTACCG
1 AATAATTGATTGTTACTG
*
80924260 AGTAATTGATTGTTACTG
1 AATAATTGATTGTTACTG
* * *
80924278 GATAATAGACTGTTACTG
1 AATAATTGATTGTTACTG
* *
80924296 AATAATTGAATATTACTG
1 AATAATTGATTGTTACTG
* **
80924314 AATAAATGATCATTACTG
1 AATAATTGATTGTTACTG
* **
80924332 AATAACTGATCATTACTG
1 AATAATTGATTGTTACTG
* *
80924350 AATAACTGATTGTCACTG
1 AATAATTGATTGTTACTG
* *
80924368 AATAAATGATTGTTACTA
1 AATAATTGATTGTTACTG
* * *
80924386 AATAACTTAATTGCTATTG
1 AATAA-TTGATTGTTACTG
*
80924405 AAT-ATCTGATT-TTACTA
1 AATAAT-TGATTGTTACTG
*
80924422 AATAATTGACTGTTACTGG
1 AATAATTGATTGTTACT-G
*
80924441 ATAACCGATCAATTGATTGATACTG
1 ---A---AT-AATTGATTGTTACTG
* * * *
80924466 AATAACTGGTTATTATTG
1 AATAATTGATTGTTACTG
*
80924484 AATAATTGATTGTTACCG
1 AATAATTGATTGTTACTG
*
80924502 AAT-ATTGACTGTTACTG
1 AATAATTGATTGTTACTG
80924519 AATAA
1 AATAA
80924524 ATAATTGTTT
Statistics
Matches: 218, Mismatches: 51, Indels: 26
0.74 0.17 0.09
Matches are distributed among these distances:
17 26 0.12
18 162 0.74
19 13 0.06
22 2 0.01
25 3 0.01
26 12 0.06
ACGTcount: A:0.36, C:0.11, G:0.15, T:0.38
Consensus pattern (18 bp):
AATAATTGATTGTTACTG
Found at i:80924514 original size:17 final size:17
Alignment explanation
Indices: 80924483--80924522 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
80924473 GGTTATTATT
*
80924483 GAATAATTGATTGTTACC
1 GAAT-ATTGACTGTTACC
*
80924501 GAATATTGACTGTTACT
1 GAATATTGACTGTTACC
80924518 GAATA
1 GAATA
80924523 AATAATTGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.35, C:0.10, G:0.17, T:0.38
Consensus pattern (17 bp):
GAATATTGACTGTTACC
Found at i:80925294 original size:59 final size:60
Alignment explanation
Indices: 80925160--80925294 Score: 145
Period size: 59 Copynumber: 2.3 Consensus size: 60
80925150 ACACAACAAC
* *
80925160 TTCT-ACATTGGGGCTTGCACATTTTTTTTGTCCAAGTTAATCATTGAACTTGATAATTG
1 TTCTCACATAGGGGCTTGCACATTTTTTTTGTCCAAGTTAATCACTGAACTTGATAATTG
* * * * *
80925219 TTCTCAAATTA-AGGCTTG-A-AGTTTTTTTTGTCCAAGTTAGTCCCTGAACTTGGTAATTG
1 TTCTCACA-TAGGGGCTTGCACA-TTTTTTTTGTCCAAGTTAATCACTGAACTTGATAATTG
80925278 TT-TCCACATAGGGGCTT
1 TTCT-CACATAGGGGCTT
80925295 AAACTTTAGG
Statistics
Matches: 62, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
58 4 0.06
59 49 0.79
60 8 0.13
61 1 0.02
ACGTcount: A:0.23, C:0.16, G:0.19, T:0.42
Consensus pattern (60 bp):
TTCTCACATAGGGGCTTGCACATTTTTTTTGTCCAAGTTAATCACTGAACTTGATAATTG
Found at i:80926957 original size:3 final size:3
Alignment explanation
Indices: 80926951--80927128 Score: 94
Period size: 3 Copynumber: 58.3 Consensus size: 3
80926941 TTTTTCTAAA
* * * *
80926951 ATT ATT AAT ATT ATT AAT ATT ATT TTT ATT -TCT ATT ATT ATT ACT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT
* * * * * * * * * *
80926996 AAT ATC ACT ATC ATC ATC ATC ATC ATC ATC ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* *
80927044 ATT ATT ATT ATT ACTT -TT TTT ACT ATCT AATGT ATT ATT A-T ACCTT
1 ATT ATT ATT ATT A-TT ATT ATT ATT AT-T -AT-T ATT ATT ATT A--TT
* **
80927090 ATT ATT ATT ATT ATT ATT -GT ATT ATT GCT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
80927129 AATTTTCCTT
Statistics
Matches: 140, Mismatches: 25, Indels: 20
0.76 0.14 0.11
Matches are distributed among these distances:
2 6 0.04
3 123 0.88
4 6 0.04
5 5 0.04
ACGTcount: A:0.32, C:0.10, G:0.02, T:0.57
Consensus pattern (3 bp):
ATT
Found at i:80927347 original size:22 final size:22
Alignment explanation
Indices: 80927307--80927348 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
80927297 TTTGTCTTAT
*
80927307 TGTTATTACTATTTGTATTTAC
1 TGTTATTACTATATGTATTTAC
80927329 TGTTATTACTACTAT-TATTT
1 TGTTATTACTA-TATGTATTT
80927349 TTTACTTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 16 0.89
23 2 0.11
ACGTcount: A:0.24, C:0.10, G:0.07, T:0.60
Consensus pattern (22 bp):
TGTTATTACTATATGTATTTAC
Found at i:80927372 original size:25 final size:27
Alignment explanation
Indices: 80927303--80927372 Score: 72
Period size: 25 Copynumber: 2.6 Consensus size: 27
80927293 ATTATTTGTC
*
80927303 TTATTGTTATTACTATTTGTATTTACTG
1 TTATTATTATTACTA-TTGTATTTACTG
* * * *
80927331 TTATTACTACTATTATT-T-TTTACTT
1 TTATTATTATTACTATTGTATTTACTG
80927356 TTATTATTATTACTATT
1 TTATTATTATTACTATT
80927373 ATTATCACTA
Statistics
Matches: 34, Mismatches: 8, Indels: 3
0.76 0.18 0.07
Matches are distributed among these distances:
25 20 0.59
26 1 0.03
27 2 0.06
28 11 0.32
ACGTcount: A:0.24, C:0.09, G:0.04, T:0.63
Consensus pattern (27 bp):
TTATTATTATTACTATTGTATTTACTG
Found at i:80927398 original size:40 final size:40
Alignment explanation
Indices: 80927325--80927407 Score: 107
Period size: 40 Copynumber: 2.1 Consensus size: 40
80927315 CTATTTGTAT
* *
80927325 TTACTGTTATTACTACTATTATTTTTTACTTTTATTATTA
1 TTACTATTATTACTACTATTATTTTTTACTTTTATTACTA
*
80927365 TTACTATTATTA-TCACTATTA-TTTTTATTTTTTATTACTA
1 TTACTATTATTACT-ACTATTATTTTTTA-CTTTTATTACTA
80927405 TTA
1 TTA
80927408 TCATTTTAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
39 7 0.18
40 31 0.82
ACGTcount: A:0.27, C:0.10, G:0.01, T:0.63
Consensus pattern (40 bp):
TTACTATTATTACTACTATTATTTTTTACTTTTATTACTA
Found at i:80927461 original size:3 final size:3
Alignment explanation
Indices: 80927453--80927589 Score: 93
Period size: 3 Copynumber: 43.0 Consensus size: 3
80927443 ATTTAATACA
80927453 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAGT GTAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T -TAT TAT TAT
* * *
80927500 TAT TAA TAT TAGT GTAT GTTT CTAT TAT ATAT ATATT TAT ATAT ATAG
1 TAT TAT TAT TA-T -TAT -TAT -TAT TAT -TAT -TA-T TAT -TAT -TAT
* *
80927548 TAT TAT T-T TAAT TAC T-T TAT T-T TAA TAT TAT TAT TA- TAT TAT
1 TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
80927590 ATGTCTTCCT
Statistics
Matches: 111, Mismatches: 11, Indels: 24
0.76 0.08 0.16
Matches are distributed among these distances:
2 7 0.06
3 74 0.67
4 25 0.23
5 5 0.05
ACGTcount: A:0.34, C:0.01, G:0.04, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:80927671 original size:7 final size:7
Alignment explanation
Indices: 80927606--80927672 Score: 55
Period size: 7 Copynumber: 9.3 Consensus size: 7
80927596 TCCTTTTGTG
80927606 TTTATTTA
1 TTTA-TTA
*
80927614 TTTATTGT
1 TTTATT-A
80927622 TTTATTA
1 TTTATTA
*
80927629 TTAATTAA
1 TTTATT-A
**
80927637 TTTAGCA
1 TTTATTA
80927644 -TTATTA
1 TTTATTA
*
80927650 ATTATTA
1 TTTATTA
80927657 TTTATTA
1 TTTATTA
80927664 TTTATTA
1 TTTATTA
80927671 TT
1 TT
80927673 GTCCTTGTTA
Statistics
Matches: 47, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
6 4 0.09
7 29 0.62
8 14 0.30
ACGTcount: A:0.30, C:0.01, G:0.03, T:0.66
Consensus pattern (7 bp):
TTTATTA
Found at i:80929165 original size:26 final size:26
Alignment explanation
Indices: 80929136--80929243 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
80929126 TGGTACAAAT
80929136 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
80929162 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80929188 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
80929214 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80929240 TGAT
1 TGAT
80929244 GGGAATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:80933195 original size:20 final size:20
Alignment explanation
Indices: 80933158--80933196 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
80933148 GACTCTTTTT
* *
80933158 TATTATTATTTGTTTTAAAC
1 TATTATTATTTATCTTAAAC
*
80933178 TATTTTTATTTATCTTAAA
1 TATTATTATTTATCTTAAA
80933197 TTTCATACAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.31, C:0.05, G:0.03, T:0.62
Consensus pattern (20 bp):
TATTATTATTTATCTTAAAC
Found at i:80933311 original size:27 final size:26
Alignment explanation
Indices: 80933214--80933336 Score: 144
Period size: 26 Copynumber: 4.8 Consensus size: 26
80933204 CATTAAACTG
*
80933214 TTTTAAATTGTTTTAGATA-TATT-A
1 TTTTAAATTGTTTTATATATTATTCA
* * *
80933238 TTTTAAATTATTTTATATACTATACA
1 TTTTAAATTGTTTTATATATTATTCA
* * *
80933264 CTTTAAATTGTTTTGTATATTATTTA
1 TTTTAAATTGTTTTATATATTATTCA
*
80933290 TTTTAAATTTGTTTTATGTATTATTCA
1 TTTTAAA-TTGTTTTATATATTATTCA
80933317 TTTTAAATTGTTTTAT-TATT
1 TTTTAAATTGTTTTATATATT
80933337 TACATTAATT
Statistics
Matches: 83, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
24 17 0.20
25 7 0.08
26 36 0.43
27 23 0.28
ACGTcount: A:0.30, C:0.03, G:0.06, T:0.61
Consensus pattern (26 bp):
TTTTAAATTGTTTTATATATTATTCA
Found at i:80933324 original size:53 final size:50
Alignment explanation
Indices: 80933214--80933331 Score: 148
Period size: 53 Copynumber: 2.3 Consensus size: 50
80933204 CATTAAACTG
80933214 TTTTAAATTGTTTTAGATATATTATTTTAAATTATTTTATATACTATACA
1 TTTTAAATTGTTTTAGATATATTATTTTAAATTATTTTATATACTATACA
* * * * *
80933264 CTTTAAATTGTTTT-GTATATTATTTATTTTAAATTTGTTTTATGTATTATTCA
1 TTTTAAATTGTTTTAG-ATA-TA-TTATTTTAAA-TTATTTTATATACTATACA
80933317 TTTTAAATTGTTTTA
1 TTTTAAATTGTTTTA
80933332 TTATTTACAT
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
49 1 0.02
50 16 0.28
51 2 0.04
52 10 0.18
53 28 0.49
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.60
Consensus pattern (50 bp):
TTTTAAATTGTTTTAGATATATTATTTTAAATTATTTTATATACTATACA
Found at i:80933374 original size:49 final size:49
Alignment explanation
Indices: 80933281--80933374 Score: 111
Period size: 49 Copynumber: 1.9 Consensus size: 49
80933271 TTGTTTTGTA
** * *
80933281 TATTATTTATTTTAAATTTGTTTTATGTATTATTCATTTTAAATTGTTT
1 TATTATTTACATTAAATTTGTTTTATATATTATTCATTTCAAATTGTTT
*
80933330 TATTATTTACATT-AATTTTTTTTCATATATTA-TCAATTTCAAATT
1 TATTATTTACATTAAATTTGTTTT-ATATATTATTC-ATTTCAAATT
80933375 TTTATATGTA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
48 11 0.29
49 27 0.71
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (49 bp):
TATTATTTACATTAAATTTGTTTTATATATTATTCATTTCAAATTGTTT
Found at i:80933541 original size:26 final size:26
Alignment explanation
Indices: 80933469--80933542 Score: 78
Period size: 26 Copynumber: 2.8 Consensus size: 26
80933459 TGAATTTCTT
** *
80933469 TTTACATAACATTTACTTTAAATTCA
1 TTTACATATTATTTATTTTAAATTCA
* *
80933495 TTTATATATTATTTATCTTAAATT-A
1 TTTACATATTATTTATTTTAAATTCA
*
80933520 TTTTACATATTATTTGTTTTAAA
1 -TTTACATATTATTTATTTTAAA
80933543 CTTTTTTTCC
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
25 1 0.03
26 38 0.97
ACGTcount: A:0.35, C:0.08, G:0.01, T:0.55
Consensus pattern (26 bp):
TTTACATATTATTTATTTTAAATTCA
Found at i:80935207 original size:23 final size:22
Alignment explanation
Indices: 80935167--80935222 Score: 55
Period size: 21 Copynumber: 2.6 Consensus size: 22
80935157 CCAATTTTAC
80935167 ATAAAGATATACCTA-TATATATA
1 ATAAAGATATA--TACTATATATA
* *
80935190 TTAAAGATATATAC-ATATGTA
1 ATAAAGATATATACTATATATA
80935211 ATAAA-ATATATA
1 ATAAAGATATATA
80935223 AATAACATGA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
20 7 0.24
21 12 0.41
23 10 0.34
ACGTcount: A:0.54, C:0.05, G:0.05, T:0.36
Consensus pattern (22 bp):
ATAAAGATATATACTATATATA
Found at i:80935293 original size:18 final size:19
Alignment explanation
Indices: 80935267--80935306 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
80935257 TATGATAAAA
*
80935267 ATAATAATATACATAATAT
1 ATAATAATACACATAATAT
*
80935286 ATAA-AATACATATAATAT
1 ATAATAATACACATAATAT
80935304 ATA
1 ATA
80935307 CATATACTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (19 bp):
ATAATAATACACATAATAT
Found at i:80935307 original size:13 final size:14
Alignment explanation
Indices: 80935267--80935312 Score: 58
Period size: 13 Copynumber: 3.2 Consensus size: 14
80935257 TATGATAAAA
80935267 ATAATAATATACAT
1 ATAATAATATACAT
*
80935281 AATATATAAAATACAT
1 -ATA-ATAATATACAT
80935297 ATAAT-ATATACAT
1 ATAATAATATACAT
80935310 ATA
1 ATA
80935313 CTAGAAATGA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 10 0.36
14 2 0.07
15 6 0.21
16 10 0.36
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.35
Consensus pattern (14 bp):
ATAATAATATACAT
Found at i:80935436 original size:21 final size:19
Alignment explanation
Indices: 80935406--80935449 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
80935396 AGAAATACTT
*
80935406 AATATATA-ATAAT-TTAA
1 AATATATACATAATATAAA
80935423 AATATATACATAATATAAA
1 AATATATACATAATATAAA
80935442 AATATATA
1 AATATATA
80935450 TAGAACGTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 8 0.33
18 5 0.21
19 11 0.46
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.36
Consensus pattern (19 bp):
AATATATACATAATATAAA
Found at i:80935818 original size:3 final size:3
Alignment explanation
Indices: 80935810--80935842 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
80935800 ATGACAACAC
80935810 ATA ATA ATA ATA ATA ATA A-A ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
80935843 ATTAAAGTAG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.07
3 27 0.93
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:80935834 original size:14 final size:14
Alignment explanation
Indices: 80935810--80935843 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
80935800 ATGACAACAC
80935810 ATAATAATAATAATA
1 ATAA-AATAATAATA
80935825 ATAAAATAATAATA
1 ATAAAATAATAATA
80935839 ATAAA
1 ATAAA
80935844 TTAAAGTAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 15 0.79
15 4 0.21
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (14 bp):
ATAAAATAATAATA
Found at i:80936426 original size:16 final size:16
Alignment explanation
Indices: 80936405--80936439 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
80936395 AAAATTCTAA
* *
80936405 TTTTTTTGTTTTATTT
1 TTTTTTTATATTATTT
80936421 TTTTTTTATATTATTT
1 TTTTTTTATATTATTT
80936437 TTT
1 TTT
80936440 CCTTTATTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.11, C:0.00, G:0.03, T:0.86
Consensus pattern (16 bp):
TTTTTTTATATTATTT
Found at i:80937661 original size:18 final size:18
Alignment explanation
Indices: 80937638--80937672 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
80937628 TCAAAAATGT
*
80937638 TGTTTTAGTAAACCAAAA
1 TGTTTTAGTAAAACAAAA
*
80937656 TGTTTTATTAAAACAAA
1 TGTTTTAGTAAAACAAA
80937673 GGTGATCCGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.09, G:0.09, T:0.37
Consensus pattern (18 bp):
TGTTTTAGTAAAACAAAA
Found at i:80940214 original size:3 final size:3
Alignment explanation
Indices: 80940206--80940250 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
80940196 AGTTACCTTG
80940206 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
80940251 AGCAAGAATA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:80942439 original size:26 final size:26
Alignment explanation
Indices: 80942402--80942485 Score: 132
Period size: 26 Copynumber: 3.2 Consensus size: 26
80942392 TGATACAAAT
* *
80942402 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
80942428 TGATAATGGGTTAGGTATATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
80942454 TGATAATGGGTTAGGTAAAGGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
80942480 TGATAA
1 TGATAA
80942486 GAATTTCATG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.32, C:0.05, G:0.26, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:80945382 original size:14 final size:14
Alignment explanation
Indices: 80945355--80945463 Score: 50
Period size: 13 Copynumber: 7.6 Consensus size: 14
80945345 TAATTTTAAT
*
80945355 AAATATTTATTATTA
1 AAATA-TTAATATTA
80945370 AAATATTAATATTA
1 AAATATTAATATTA
* *
80945384 AATTTTCAATAATATGTGA
1 AA--AT-ATTAATAT-T-A
80945403 ATAATATT-AT-TTA
1 A-AATATTAATATTA
* *
80945416 AAATTATTATTTTTA
1 AAA-TATTAATATTA
*
80945431 AAAT-TTATTATTA
1 AAATATTAATATTA
80945444 AAATA--AA-ATTA
1 AAATATTAATATTA
80945455 AAATATTAA
1 AAATATTAA
80945464 ATAATTTATT
Statistics
Matches: 74, Mismatches: 8, Indels: 26
0.69 0.07 0.24
Matches are distributed among these distances:
11 9 0.12
12 3 0.04
13 20 0.27
14 13 0.18
15 12 0.16
16 3 0.04
17 9 0.12
18 2 0.03
19 2 0.03
20 1 0.01
ACGTcount: A:0.50, C:0.01, G:0.02, T:0.47
Consensus pattern (14 bp):
AAATATTAATATTA
Found at i:80945438 original size:16 final size:16
Alignment explanation
Indices: 80945407--80945443 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
80945397 ATGTGAATAA
80945407 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
80945423 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
80945439 TATTA
1 TATTA
80945444 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:80945495 original size:22 final size:22
Alignment explanation
Indices: 80945451--80945510 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 22
80945441 TTAAAATAAA
*
80945451 ATTAAAATATTAAA-TA-ATTT
1 ATTAAAATAATAAATTATATTT
80945471 ATTAAAATAATAAATTATATTT
1 ATTAAAATAATAAATTATATTT
* * *
80945493 ATTATATTAATAATTTAT
1 ATTAAAATAATAAATTAT
80945511 TATAGGACTA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.38
21 2 0.06
22 19 0.56
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATTAAAATAATAAATTATATTT
Found at i:80946161 original size:31 final size:31
Alignment explanation
Indices: 80946125--80946197 Score: 94
Period size: 31 Copynumber: 2.4 Consensus size: 31
80946115 TTACAAAATG
*
80946125 GTTATTGAATTATTCGAA-AGTTTTCATTTAA
1 GTTATTGAACTATTC-AATAGTTTTCATTTAA
* *
80946156 GTTATTAAACTATTCAATAGTTTTTATTTAA
1 GTTATTGAACTATTCAATAGTTTTCATTTAA
*
80946187 GTCATTGAACT
1 GTTATTGAACT
80946198 GTTAAGTTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
30 2 0.06
31 34 0.94
ACGTcount: A:0.33, C:0.08, G:0.11, T:0.48
Consensus pattern (31 bp):
GTTATTGAACTATTCAATAGTTTTCATTTAA
Found at i:80954797 original size:17 final size:16
Alignment explanation
Indices: 80954772--80954803 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
80954762 ATAGAGAATG
80954772 AAAAAAAAATTAAAAA
1 AAAAAAAAATTAAAAA
80954788 AAAAAGAAAATTAAAA
1 AAAAA-AAAATTAAAA
80954804 GAACATAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.84, C:0.00, G:0.03, T:0.12
Consensus pattern (16 bp):
AAAAAAAAATTAAAAA
Found at i:80961570 original size:73 final size:75
Alignment explanation
Indices: 80961429--80961575 Score: 244
Period size: 75 Copynumber: 2.0 Consensus size: 75
80961419 TTTCTAGGAT
*
80961429 ATTTAAGTACATAGGTCAATTTTGAAAAAAAAATAAAAAAAGATATCTTGCAAGAAGCCGTTGAA
1 ATTTAAGGACATAGGTCAATTTTGAAAAAAAAATAAAAAAAGATATCTTGCAAGAAGCCGTTGAA
80961494 AACGCGTCCC
66 AACGCGTCCC
* * *
80961504 ATTTAAGGACATAGGTCAATTTTGAAAAAAAAA-AAAAAACG-TGTCTTGCAAGAAGCTGTTGAA
1 ATTTAAGGACATAGGTCAATTTTGAAAAAAAAATAAAAAAAGATATCTTGCAAGAAGCCGTTGAA
80961567 AACGCGTCC
66 AACGCGTCC
80961576 TGTAAGACAC
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
73 29 0.43
74 7 0.10
75 32 0.47
ACGTcount: A:0.44, C:0.14, G:0.18, T:0.24
Consensus pattern (75 bp):
ATTTAAGGACATAGGTCAATTTTGAAAAAAAAATAAAAAAAGATATCTTGCAAGAAGCCGTTGAA
AACGCGTCCC
Found at i:80972278 original size:29 final size:29
Alignment explanation
Indices: 80972239--80972297 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
80972229 CTCTCAAACA
80972239 TCACTCATAAAATTCTATAATTAATACAT
1 TCACTCATAAAATTCTATAATTAATACAT
*
80972268 TCACTCGTAAAATTCTATAATTAATACAT
1 TCACTCATAAAATTCTATAATTAATACAT
80972297 T
1 T
80972298 TTTAATTTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.42, C:0.17, G:0.02, T:0.39
Consensus pattern (29 bp):
TCACTCATAAAATTCTATAATTAATACAT
Found at i:80980123 original size:21 final size:21
Alignment explanation
Indices: 80980097--80980137 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
80980087 ATCTGCTCAA
* *
80980097 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
80980118 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
80980138 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:80983873 original size:17 final size:17
Alignment explanation
Indices: 80983851--80983886 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
80983841 ATCGAGATTA
80983851 TAATTTTTACGATAATC
1 TAATTTTTACGATAATC
80983868 TAATTTTTACGATAATC
1 TAATTTTTACGATAATC
80983885 TA
1 TA
80983887 CAAGATAGTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.36, C:0.11, G:0.06, T:0.47
Consensus pattern (17 bp):
TAATTTTTACGATAATC
Found at i:80984802 original size:18 final size:17
Alignment explanation
Indices: 80984771--80984805 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
80984761 GATTTAGGCT
80984771 TTAAATTTTTTAATTAA
1 TTAAATTTTTTAATTAA
80984788 TTAAATTTATTTAATTAA
1 TTAAATTT-TTTAATTAA
80984806 AAATCTATTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
TTAAATTTTTTAATTAA
Found at i:80988280 original size:26 final size:25
Alignment explanation
Indices: 80988250--80988314 Score: 77
Period size: 22 Copynumber: 2.7 Consensus size: 25
80988240 AAGTATACGT
80988250 ACAATAGTATAAAAGATATATA-ACTA
1 ACAATA-TATAAAAGATATATACA-TA
80988276 ACAATAT-T-AAAG-TATATACATA
1 ACAATATATAAAAGATATATACATA
80988298 ACAATATATAAAA-ATAT
1 ACAATATATAAAAGATAT
80988315 GATATTAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
22 15 0.43
23 6 0.17
24 7 0.20
25 1 0.03
26 6 0.17
ACGTcount: A:0.58, C:0.08, G:0.05, T:0.29
Consensus pattern (25 bp):
ACAATATATAAAAGATATATACATA
Found at i:80988366 original size:11 final size:11
Alignment explanation
Indices: 80988327--80988402 Score: 62
Period size: 11 Copynumber: 6.5 Consensus size: 11
80988317 TATTAAAAAC
80988327 ATATATACATA
1 ATATATACATA
*
80988338 ATAATATGAAATA
1 AT-ATAT-ACATA
*
80988351 TATATATATATA
1 -ATATATACATA
* *
80988363 ATATAGTATTAGA
1 ATATA-TA-CATA
*
80988376 ATATTTACATA
1 ATATATACATA
80988387 ATATATACATA
1 ATATATACATA
80988398 ATATA
1 ATATA
80988403 AATACTAATG
Statistics
Matches: 53, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
11 24 0.45
12 12 0.23
13 15 0.28
14 2 0.04
ACGTcount: A:0.53, C:0.04, G:0.04, T:0.39
Consensus pattern (11 bp):
ATATATACATA
Found at i:80988366 original size:13 final size:13
Alignment explanation
Indices: 80988288--80988411 Score: 52
Period size: 13 Copynumber: 9.9 Consensus size: 13
80988278 AATATTAAAG
*
80988288 TATATACATAACAA
1 TATATACATAA-TA
*
80988302 TATATA-AAAATA
1 TATATACATAATA
* *
80988314 TGATATTA-AAAACA
1 T-ATA-TACATAATA
80988328 TATATACATAATA
1 TATATACATAATA
*
80988341 -ATATGAAAT-ATA
1 TATAT-ACATAATA
*
80988353 TATATATATAATA
1 TATATACATAATA
* *
80988366 TAGTAT-TAGAATA
1 TA-TATACATAATA
80988379 T-T-TACAT-A-A
1 TATATACATAATA
80988388 TATATACATAATA
1 TATATACATAATA
*
80988401 TAAATAC-TAAT
1 TATATACATAAT
80988412 GATGTTAAAA
Statistics
Matches: 87, Mismatches: 11, Indels: 26
0.70 0.09 0.21
Matches are distributed among these distances:
9 2 0.02
10 3 0.03
11 7 0.08
12 19 0.22
13 39 0.45
14 17 0.20
ACGTcount: A:0.55, C:0.06, G:0.03, T:0.36
Consensus pattern (13 bp):
TATATACATAATA
Found at i:80993716 original size:28 final size:28
Alignment explanation
Indices: 80993660--80993722 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
80993650 GTCATTATCA
*
80993660 ACCCCATAAGTTATAAAACCCTTCTTAT
1 ACCCCATAAGTTATAAAACCCTTCCTAT
* * **
80993688 ACCCCATAAGTTATGAGACTTTTCCTAT
1 ACCCCATAAGTTATAAAACCCTTCCTAT
80993716 ACCCCAT
1 ACCCCAT
80993723 TAATATGGGA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.32, C:0.30, G:0.06, T:0.32
Consensus pattern (28 bp):
ACCCCATAAGTTATAAAACCCTTCCTAT
Found at i:80994301 original size:42 final size:43
Alignment explanation
Indices: 80994216--80994301 Score: 122
Period size: 44 Copynumber: 2.0 Consensus size: 43
80994206 ATATTTCATT
*
80994216 TCCATAATCAAACAAATCCAGCACTGTGGAATCAATCAAATTCA
1 TCCATAATCAAACAAATCCAGCAC-GTGGAATCAAACAAATTCA
*
80994260 TCCATAATCAAACAAATCGTA-CAC-TGGAATCAAACAAATTCA
1 TCCATAATCAAACAAATC-CAGCACGTGGAATCAAACAAATTCA
80994302 GAAAATTAGT
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
42 17 0.44
44 21 0.54
45 1 0.03
ACGTcount: A:0.45, C:0.24, G:0.08, T:0.22
Consensus pattern (43 bp):
TCCATAATCAAACAAATCCAGCACGTGGAATCAAACAAATTCA
Found at i:80997627 original size:26 final size:26
Alignment explanation
Indices: 80997590--80997671 Score: 128
Period size: 26 Copynumber: 3.2 Consensus size: 26
80997580 TGATACAAAT
* * *
80997590 TGATAATAGGTTATGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
80997616 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80997642 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80997668 TGAT
1 TGAT
80997672 TGGAATTTCA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.33, C:0.06, G:0.23, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:80999324 original size:27 final size:26
Alignment explanation
Indices: 80999284--80999449 Score: 179
Period size: 27 Copynumber: 6.2 Consensus size: 26
80999274 AGGAAGCGTC
*
80999284 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
80999311 CTGGTGGCTTTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* * *
80999338 CTAGTGGCTATGCCACAAATATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
80999365 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
80999392 CTGGTGGCTCTGCCATGATTATCTGTAT
1 CTGGTGGCTCTGCCA-CATTATCTG-AT
* * *
80999420 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
80999446 CTGG
1 CTGG
80999450 CAGCCATGCT
Statistics
Matches: 118, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
26 8 0.07
27 93 0.79
28 17 0.14
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:80999448 original size:54 final size:54
Alignment explanation
Indices: 80999284--80999449 Score: 244
Period size: 54 Copynumber: 3.1 Consensus size: 54
80999274 AGGAAGCGTC
*
80999284 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTTTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* *
80999338 CTAGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* ** * *
80999392 CTGGTGGCTCTGCCATGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGGCTCTGCCACATATATCTGTT
80999446 CTGG
1 CTGG
80999450 CAGCCATGCT
Statistics
Matches: 101, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
54 83 0.82
55 18 0.18
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:81001770 original size:24 final size:23
Alignment explanation
Indices: 81001743--81001825 Score: 64
Period size: 24 Copynumber: 3.7 Consensus size: 23
81001733 ACATCTCCAT
81001743 AATCAAACAAATCCAACGCTGTGG
1 AATCAAACAAATCCAAC-CTGTGG
* * * *
81001767 AATCAGACAAATTCATCC-AT--
1 AATCAAACAAATCCAACCTGTGG
***
81001787 AATCAAACAAATAGTACACTGTGG
1 AATCAAACAAATCCAAC-CTGTGG
81001811 AATCAAACAAATCCA
1 AATCAAACAAATCCA
81001826 GAAAATTAGT
Statistics
Matches: 42, Mismatches: 13, Indels: 8
0.67 0.21 0.13
Matches are distributed among these distances:
20 12 0.29
21 1 0.02
22 2 0.05
23 1 0.02
24 26 0.62
ACGTcount: A:0.47, C:0.23, G:0.11, T:0.19
Consensus pattern (23 bp):
AATCAAACAAATCCAACCTGTGG
Found at i:81001809 original size:44 final size:44
Alignment explanation
Indices: 81001738--81001822 Score: 125
Period size: 44 Copynumber: 1.9 Consensus size: 44
81001728 TCCATACATC
* * *
81001738 TCCATAATCAAACAAATCCAACGCTGTGGAATCAGACAAATTCA
1 TCCATAATCAAACAAATACAACACTGTGGAATCAAACAAATTCA
**
81001782 TCCATAATCAAACAAATAGTACACTGTGGAATCAAACAAAT
1 TCCATAATCAAACAAATACAACACTGTGGAATCAAACAAAT
81001823 CCAGAAAATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 36 1.00
ACGTcount: A:0.46, C:0.22, G:0.11, T:0.21
Consensus pattern (44 bp):
TCCATAATCAAACAAATACAACACTGTGGAATCAAACAAATTCA
Found at i:81002110 original size:40 final size:41
Alignment explanation
Indices: 81002066--81002152 Score: 113
Period size: 40 Copynumber: 2.1 Consensus size: 41
81002056 TCAAATACAT
81002066 TTAAAACAAATATTAAAACAAGAAACAAA-TAAAAAATATA
1 TTAAAACAAATATTAAAACAAGAAACAAATTAAAAAATATA
* * * * *
81002106 TTAAAACAATTCTTAAAACAATACACAAATTGAAAAATATA
1 TTAAAACAAATATTAAAACAAGAAACAAATTAAAAAATATA
*
81002147 ATAAAA
1 TTAAAA
81002153 ATTGATTATA
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
40 25 0.62
41 15 0.38
ACGTcount: A:0.66, C:0.09, G:0.02, T:0.23
Consensus pattern (41 bp):
TTAAAACAAATATTAAAACAAGAAACAAATTAAAAAATATA
Found at i:81003948 original size:12 final size:12
Alignment explanation
Indices: 81003931--81003964 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
81003921 CGGCCCGCCC
81003931 ATATTAATTTTT
1 ATATTAATTTTT
*
81003943 ATATTATTTTTT
1 ATATTAATTTTT
81003955 ATA-TAATTTT
1 ATATTAATTTT
81003965 AAAATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 6 0.30
12 14 0.70
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:81004124 original size:30 final size:29
Alignment explanation
Indices: 81004088--81004149 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 29
81004078 ACTTAATAAG
81004088 CAAATGCCTCTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAA-AAAATTAA
*
81004118 CAAATGCCTTTAAAATAATAAAAAATTAA
1 CAAATGCCTCTAAAATAATAAAAAATTAA
81004147 CAA
1 CAA
81004150 TAAAATTAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 11 0.35
30 20 0.65
ACGTcount: A:0.58, C:0.15, G:0.03, T:0.24
Consensus pattern (29 bp):
CAAATGCCTCTAAAATAATAAAAAATTAA
Found at i:81004341 original size:17 final size:17
Alignment explanation
Indices: 81004319--81004352 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
81004309 TCTTACCCGA
81004319 GGCACATCACACTCTTT
1 GGCACATCACACTCTTT
*
81004336 GGCACATCATACTCTTT
1 GGCACATCACACTCTTT
81004353 AGCCTTCAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.32, G:0.12, T:0.32
Consensus pattern (17 bp):
GGCACATCACACTCTTT
Found at i:81008422 original size:21 final size:21
Alignment explanation
Indices: 81008362--81008467 Score: 79
Period size: 21 Copynumber: 5.0 Consensus size: 21
81008352 TTCCATTTAG
* *
81008362 CTCTTACGAGCTTCTGTTTAA
1 CTCTTATGAGCTTCTGTTCAA
* * *
81008383 CTCATATAAG-TTTTCGTTCAA
1 CTCTTATGAGCTTCT-GTTCAA
81008404 CTCTTATGAGCTTCTGTTCAA
1 CTCTTATGAGCTTCTGTTCAA
* * * * *
81008425 CCCTTATGGGTTTCTGTTTAG
1 CTCTTATGAGCTTCTGTTCAA
* * *
81008446 CACTTATGTGGTTCTGTTCAA
1 CTCTTATGAGCTTCTGTTCAA
81008467 C
1 C
81008468 CTTCGGGCTT
Statistics
Matches: 65, Mismatches: 18, Indels: 4
0.75 0.21 0.05
Matches are distributed among these distances:
20 3 0.05
21 59 0.91
22 3 0.05
ACGTcount: A:0.19, C:0.22, G:0.16, T:0.43
Consensus pattern (21 bp):
CTCTTATGAGCTTCTGTTCAA
Found at i:81016655 original size:22 final size:21
Alignment explanation
Indices: 81016627--81016668 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
81016617 AAGGCCGTGG
81016627 CTTCCTTTCTTCTTTCTCTTTT
1 CTTCCTTT-TTCTTTCTCTTTT
*
81016649 CTTCCTTTTTCTTTTTCTTT
1 CTTCCTTTTTCTTTCTCTTT
81016669 CTTTTTCGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (21 bp):
CTTCCTTTTTCTTTCTCTTTT
Found at i:81016666 original size:16 final size:17
Alignment explanation
Indices: 81016639--81016675 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
81016629 TCCTTTCTTC
81016639 TTTCTCTTTTCTTCCTT
1 TTTCTCTTTTCTTCCTT
*
81016656 TTTCT-TTTTCTTTCTT
1 TTTCTCTTTTCTTCCTT
81016672 TTTC
1 TTTC
81016676 GTTTGGTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTCTCTTTTCTTCCTT
Done.