Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 250 of 255
Found at i:81018442 original size:4 final size:4
Alignment explanation
Indices: 81018433--81018466 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
81018423 ACAAATTGTT
* *
81018433 TTTA TTTA TTTA TTTA TTCA TTTA TTTG TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
81018467 ACCTTTTTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.21, C:0.03, G:0.03, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:81020665 original size:38 final size:38
Alignment explanation
Indices: 81020609--81020888 Score: 380
Period size: 38 Copynumber: 7.3 Consensus size: 38
81020599 GGCACGAAGG
* * * * *
81020609 CCCGAATATAATACCAGCACTAGGCCTGCGAGATTTAT
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
81020647 CCCGGATATAATACCAGCACAAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
** * * **
81020685 CCCGGATATTTTACCAACATGAAGCCTGCAGGTCTTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGC-GGGATTTAA
81020724 GCCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 -CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
81020763 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
** **
81020801 CCCGGATATTTTACCAGCACGAAGCCTGCCGGTCTTTAA
1 CCCGGATATAATACCAGCACGAAGCCTG-CGGGATTTAA
81020840 GCCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 -CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
81020879 CCCGGATATA
1 CCCGGATATA
81020889 CATCGAATAT
Statistics
Matches: 212, Mismatches: 26, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
38 131 0.62
39 30 0.14
40 51 0.24
ACGTcount: A:0.30, C:0.27, G:0.22, T:0.21
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:81020750 original size:78 final size:76
Alignment explanation
Indices: 81020609--81020888 Score: 380
Period size: 78 Copynumber: 3.6 Consensus size: 76
81020599 GGCACGAAGG
* * * * * *
81020609 CCCGAATATAATACCAGCACTAGGCCTGCGAGATTTATCCCGGATATAATACCAGCACAAAGCCT
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCT
81020674 GCGGGATTTAA
66 GCGGGATTTAA
** * * **
81020685 CCCGGATATTTTACCAACATGAAGCCTGCAGGTCTTTAAGCCCGGATATAATACCAGCACGAAGC
1 CCCGGATATAATACCAGCACGAAGCCTGC-GGGATTTAA-CCCGGATATAATACCAGCACGAAGC
81020750 CTGCGGGATTTAA
64 CTGCGGGATTTAA
**
81020763 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATTTTACCAGCACGAAGCCT
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCT
**
81020828 GCCGGTCTTTAA
66 G-CGGGATTTAA
81020840 GCCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATA
1 -CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATA
81020889 CATCGAATAT
Statistics
Matches: 177, Mismatches: 23, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
76 48 0.27
77 20 0.11
78 109 0.62
ACGTcount: A:0.30, C:0.27, G:0.22, T:0.21
Consensus pattern (76 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCT
GCGGGATTTAA
Found at i:81020812 original size:116 final size:116
Alignment explanation
Indices: 81020608--81020888 Score: 481
Period size: 116 Copynumber: 2.4 Consensus size: 116
81020598 AGGCACGAAG
* * * * *
81020608 GCCCGAATATAATACCAGCACTAGGCCTGCGAGATTTATCCCGGATATAATACCAGCACAAAGCC
1 GCCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACAAAGCC
*
81020673 TGCGGGATTTAACCCGGATATTTTACCAACATGAAGCCTGCAGGTCTTTAA
66 TGCGGGATTTAACCCGGATATTTTACCAACACGAAGCCTGCAGGTCTTTAA
*
81020724 GCCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCC
1 GCCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACAAAGCC
* *
81020789 TGCGGGATTTAACCCGGATATTTTACCAGCACGAAGCCTGCCGGTCTTTAA
66 TGCGGGATTTAACCCGGATATTTTACCAACACGAAGCCTGCAGGTCTTTAA
81020840 GCCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATA
1 GCCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATA
81020889 CATCGAATAT
Statistics
Matches: 156, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
116 156 1.00
ACGTcount: A:0.30, C:0.27, G:0.22, T:0.21
Consensus pattern (116 bp):
GCCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACAAAGCC
TGCGGGATTTAACCCGGATATTTTACCAACACGAAGCCTGCAGGTCTTTAA
Found at i:81022017 original size:5 final size:5
Alignment explanation
Indices: 81021991--81022048 Score: 62
Period size: 5 Copynumber: 10.8 Consensus size: 5
81021981 ATGTGTTAAA
* *
81021991 ATATAT ATATT AAATT ATTATT ATATT ATAGT ATATT ATATTAT ATATT
1 ATAT-T ATATT ATATT A-TATT ATATT ATATT ATATT ATA-T-T ATATT
81022040 ATATT ATAT
1 ATATT ATAT
81022049 AAATAAGTAA
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
5 31 0.69
6 10 0.22
7 4 0.09
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (5 bp):
ATATT
Found at i:81022027 original size:10 final size:9
Alignment explanation
Indices: 81021992--81022049 Score: 61
Period size: 8 Copynumber: 6.7 Consensus size: 9
81021982 TGTGTTAAAA
81021992 TATATATAT
1 TATATATAT
*
81022001 TAAAT-TAT
1 TATATATAT
81022009 TAT-TATAT
1 TATATATAT
81022017 TATAGTATAT
1 TATA-TATAT
81022027 TATAT-TA-
1 TATATATAT
81022034 TATATTATAT
1 TATA-TATAT
81022044 TATATA
1 TATATA
81022050 AATAAGTAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
7 5 0.12
8 14 0.34
9 9 0.22
10 13 0.32
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (9 bp):
TATATATAT
Found at i:81022039 original size:12 final size:12
Alignment explanation
Indices: 81021994--81022049 Score: 69
Period size: 12 Copynumber: 4.5 Consensus size: 12
81021984 TGTTAAAATA
*
81021994 TATATATTAAAT
1 TATATATTATAT
81022006 TAT-TATTATATT
1 TATATATTATA-T
81022018 ATAGTATATTATAT
1 -TA-TATATTATAT
81022032 TATATATTATAT
1 TATATATTATAT
81022044 TATATA
1 TATATA
81022050 AATAAGTAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 6 0.15
12 20 0.51
13 4 0.10
14 2 0.05
15 7 0.18
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (12 bp):
TATATATTATAT
Found at i:81023389 original size:16 final size:17
Alignment explanation
Indices: 81023370--81023404 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
81023360 ATAGATATAT
81023370 ATATATTGAATA-TTGA
1 ATATATTGAATATTTGA
*
81023386 ATATATTGATTATTTGA
1 ATATATTGAATATTTGA
81023403 AT
1 AT
81023405 TGAATTGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.40, C:0.00, G:0.11, T:0.49
Consensus pattern (17 bp):
ATATATTGAATATTTGA
Found at i:81034288 original size:37 final size:37
Alignment explanation
Indices: 81034227--81034335 Score: 195
Period size: 37 Copynumber: 3.0 Consensus size: 37
81034217 TACGTATGAT
81034227 CACTTATCAC-TTG-TTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
81034262 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
81034299 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
81034336 TAAAGCTATC
Statistics
Matches: 71, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
35 10 0.14
36 3 0.04
37 58 0.82
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.39
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:81034352 original size:46 final size:46
Alignment explanation
Indices: 81034299--81034665 Score: 446
Period size: 46 Copynumber: 7.6 Consensus size: 46
81034289 TAAGTGTAGC
* **
81034299 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
81034345 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
81034391 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
81034443 CACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
81034495 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
81034541 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* ** *
81034587 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
81034639 CACTTATCACTTTATCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
81034666 AGTACTCAAA
Statistics
Matches: 291, Mismatches: 17, Indels: 26
0.87 0.05 0.08
Matches are distributed among these distances:
46 155 0.53
48 1 0.00
49 1 0.00
50 2 0.01
51 3 0.01
52 129 0.44
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:81034418 original size:52 final size:52
Alignment explanation
Indices: 81034342--81034659 Score: 426
Period size: 52 Copynumber: 6.3 Consensus size: 52
81034332 TAGCTAAAGC
* *
81034342 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
81034395 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * *
81034447 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
81034499 TATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
81034545 TATCAC-TTT-A----TCACTTGATCAGATAAGTATAGCCGAAGCTATTACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * ** *
81034591 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
81034643 TATCACTTTATCACTTG
1 TATCACTTT-TCACTTG
81034660 ATCAGAAGTA
Statistics
Matches: 239, Mismatches: 16, Indels: 20
0.87 0.06 0.07
Matches are distributed among these distances:
46 84 0.35
47 2 0.01
48 2 0.01
52 133 0.56
53 18 0.08
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
Found at i:81034607 original size:196 final size:196
Alignment explanation
Indices: 81034299--81034651 Score: 607
Period size: 196 Copynumber: 1.8 Consensus size: 196
81034289 TAAGTGTAGC
* * * * *
81034299 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTATCACT
*
81034364 TGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTTCACTTGTCACTTGATCAGATAAGT
66 TGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGT
* *
81034429 GTAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTA
131 GTAGCCAAAGCTACCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTA
81034494 T
196 T
*
81034495 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTATCACT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTATCACT
*
81034560 TGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTTGTCACTTGATCAGATAAGT
66 TGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGT
*
81034625 GTAGCTAAAGCTACCACTTATCACTTT
131 GTAGCCAAAGCTACCACTTATCACTTT
81034652 ATCACTTGAT
Statistics
Matches: 146, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
196 146 1.00
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (196 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTATCACT
TGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGT
GTAGCCAAAGCTACCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTA
T
Found at i:81034654 original size:98 final size:97
Alignment explanation
Indices: 81034299--81034665 Score: 501
Period size: 98 Copynumber: 3.7 Consensus size: 97
81034289 TAAGTGTAGC
* * * *
81034299 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTT-TCAC-TTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACT
81034364 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
64 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
*
81034398 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCCACTTG
1 CAC-TTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTT--A----
* *
81034463 TCACTTGATCAGATAAGTGTAGCTGAAGCTATCACTTAT
59 TCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
81034502 CAC--T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTATCACTTG
1 CACTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTTG
*
81034562 ATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 ATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
81034594 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCACTT
1 CACTTT-CACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTT
81034659 GATCAGA
65 GATCAGA
81034666 AGTACTCAAA
Statistics
Matches: 240, Mismatches: 15, Indels: 27
0.85 0.05 0.10
Matches are distributed among these distances:
92 39 0.16
94 1 0.00
96 1 0.00
98 150 0.62
99 7 0.03
100 2 0.01
101 1 0.00
104 39 0.16
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (97 bp):
CACTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTTG
ATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:81038000 original size:15 final size:15
Alignment explanation
Indices: 81037980--81038010 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
81037970 TAAGAGAATG
*
81037980 CGCTAGGAGGGGCTA
1 CGCTAGGAGGGACTA
81037995 CGCTAGGAGGGACTA
1 CGCTAGGAGGGACTA
81038010 C
1 C
81038011 ACCAGGAGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.23, G:0.42, T:0.13
Consensus pattern (15 bp):
CGCTAGGAGGGACTA
Found at i:81038714 original size:17 final size:17
Alignment explanation
Indices: 81038692--81038727 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
81038682 TGTAATTTGA
81038692 TCTTCTTCTTCTT-CTTT
1 TCTTCTTCTT-TTGCTTT
81038709 TCTTCTTCTTTTGCTTT
1 TCTTCTTCTTTTGCTTT
81038726 TC
1 TC
81038728 CTTTTTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 2 0.11
17 16 0.89
ACGTcount: A:0.00, C:0.28, G:0.03, T:0.69
Consensus pattern (17 bp):
TCTTCTTCTTTTGCTTT
Found at i:81040789 original size:12 final size:12
Alignment explanation
Indices: 81040772--81040798 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
81040762 AAGGATAAGC
81040772 TTCGATGACAGT
1 TTCGATGACAGT
81040784 TTCGATGACAGT
1 TTCGATGACAGT
81040796 TTC
1 TTC
81040799 AACTGCACGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.37
Consensus pattern (12 bp):
TTCGATGACAGT
Found at i:81041899 original size:15 final size:15
Alignment explanation
Indices: 81041881--81041910 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
81041871 TTATTGTCAC
81041881 TTCCTTATCTCCCAT
1 TTCCTTATCTCCCAT
81041896 TTCCTTATCTCCCAT
1 TTCCTTATCTCCCAT
81041911 CTCAATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.40, G:0.00, T:0.47
Consensus pattern (15 bp):
TTCCTTATCTCCCAT
Found at i:81043552 original size:25 final size:24
Alignment explanation
Indices: 81043524--81043573 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
81043514 AAGCCATTCG
* *
81043524 TGTTTTAGGTATATATCATTTTTAT
1 TGTTTTAGATATATAT-ATATTTAT
*
81043549 TGTTTTATATATATATATATTTAT
1 TGTTTTAGATATATATATATTTAT
81043573 T
1 T
81043574 ACACTTCTAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 8 0.36
25 14 0.64
ACGTcount: A:0.28, C:0.02, G:0.08, T:0.62
Consensus pattern (24 bp):
TGTTTTAGATATATATATATTTAT
Found at i:81057077 original size:20 final size:20
Alignment explanation
Indices: 81057011--81057078 Score: 52
Period size: 21 Copynumber: 3.3 Consensus size: 20
81057001 CTTGGAAAGT
*
81057011 TTTTTGTATTTATAATTAATG
1 TTTTT-TATTTTTAATTAATG
*
81057032 TTTTGATGATATTTT--TTAAT-
1 TTTT--TTAT-TTTTAATTAATG
81057052 TATTTTTATTTTTAATTAATG
1 T-TTTTTATTTTTAATTAATG
81057073 TTTTTT
1 TTTTTT
81057079 TAAAAATATT
Statistics
Matches: 37, Mismatches: 3, Indels: 15
0.67 0.05 0.27
Matches are distributed among these distances:
18 4 0.11
19 3 0.08
20 11 0.30
21 13 0.35
22 2 0.05
23 4 0.11
ACGTcount: A:0.25, C:0.00, G:0.07, T:0.68
Consensus pattern (20 bp):
TTTTTTATTTTTAATTAATG
Found at i:81058752 original size:27 final size:27
Alignment explanation
Indices: 81058722--81058775 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
81058712 AAAAGATCAT
81058722 GACTAACTAAATAATCCCATAATTGTA
1 GACTAACTAAATAATCCCATAATTGTA
81058749 GACTAACTAAATAATCCCATAATTGTA
1 GACTAACTAAATAATCCCATAATTGTA
81058776 AACTTTGATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.44, C:0.19, G:0.07, T:0.30
Consensus pattern (27 bp):
GACTAACTAAATAATCCCATAATTGTA
Found at i:81063360 original size:13 final size:12
Alignment explanation
Indices: 81063333--81063382 Score: 52
Period size: 13 Copynumber: 4.2 Consensus size: 12
81063323 ACATGTATAT
81063333 ATAAAATA-T-A
1 ATAAAATATTAA
81063343 ATAAAATATTAGA
1 ATAAAATATTA-A
*
81063356 ATAAAA-ATGAA
1 ATAAAATATTAA
81063367 ATAAAAATATTAA
1 AT-AAAATATTAA
81063380 ATA
1 ATA
81063383 TGAAAATATA
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
10 8 0.24
11 4 0.12
12 8 0.24
13 13 0.39
ACGTcount: A:0.68, C:0.00, G:0.04, T:0.28
Consensus pattern (12 bp):
ATAAAATATTAA
Found at i:81063428 original size:23 final size:23
Alignment explanation
Indices: 81063409--81063462 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
81063399 TGTATACGCG
*
81063409 TACATAATAAAAATATATACTAA
1 TACATAATAAAAATATATACGAA
*
81063432 TACATAATAATAATA-ATA-GTAA
1 TACATAATAAAAATATATACG-AA
81063454 TAC-TAATAA
1 TACATAATAA
81063463 TACTAATAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 6 0.21
22 8 0.29
23 14 0.50
ACGTcount: A:0.59, C:0.07, G:0.02, T:0.31
Consensus pattern (23 bp):
TACATAATAAAAATATATACGAA
Found at i:81063443 original size:3 final size:3
Alignment explanation
Indices: 81063412--81063482 Score: 63
Period size: 3 Copynumber: 23.3 Consensus size: 3
81063402 ATACGCGTAC
* * * *
81063412 ATA ATA AAA ATA TATA CTA ATA CATA ATA ATA ATA ATA GTA ATA CTA
1 ATA ATA ATA ATA -ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA
* *
81063459 ATA ATA CTA ATA AT- ATA AAA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
81063483 CAAGGATATT
Statistics
Matches: 53, Mismatches: 12, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
2 2 0.04
3 45 0.85
4 6 0.11
ACGTcount: A:0.62, C:0.06, G:0.01, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:81065303 original size:95 final size:94
Alignment explanation
Indices: 81065142--81065583 Score: 719
Period size: 95 Copynumber: 4.7 Consensus size: 94
81065132 AAGATCTACA
* * *
81065142 ATCTTCAATCTATTCCACTGCCAGATACAGGAGATAGAGTTATCGGCTTCAATGTACTCC-CATG
1 ATCTTCAATCTATTCCACTGCCAAATGCAGGAGATAGAGTTATCGGCTTTAATGTACTCCAC-TG
*
81065206 TAGTCAGGGAAGTAAAATCTGCCATCTTTG
65 TAGTCAGGGAGGTAAAATCTGCCATCTTTG
*
81065236 ATCTTCAATCTATTCCACTGCCAAATGCAGAGAGATAGAGTTATCGGCTTTAATGTACTCTACTG
1 ATCTTCAATCTATTCCACTGCCAAATGCAG-GAGATAGAGTTATCGGCTTTAATGTACTCCACTG
81065301 TAGTCAGGGAGGTAAAATCTGCCATCTTTG
65 TAGTCAGGGAGGTAAAATCTGCCATCTTTG
81065331 ATCTTCAATCTATTCCACTGCCAAATGCAGAGAGATAGAGTTATCGGCTTTAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATGCAG-GAGATAGAGTTATCGGCTTTAATGTACTCCACTG
* *
81065396 TAGTCAGTGAGGTAAAATCTGCCATCTTCG
65 TAGTCAGGGAGGTAAAATCTGCCATCTTTG
* *
81065426 ATCTTCAATCTATTCCACTGTCAAATGCAGGGAGATAGAGTTATCGGC-TTCATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATGCA-GGAGATAGAGTTATCGGCTTTAATGTACTCCACTG
81065490 TAGTCAGGGAGGTAAAATCTGCCATCTTTG
65 TAGTCAGGGAGGTAAAATCTGCCATCTTTG
*
81065520 ATC-TCAATCTATTCCACTGCCAAATACCAGGAGATAGGAGTTATCGGCTTTAATGTACTCCACT
1 ATCTTCAATCTATTCCACTGCCAAAT-GCAGGAGATA-GAGTTATCGGCTTTAATGTACTCCACT
81065584 NNNNNNNNNN
Statistics
Matches: 327, Mismatches: 15, Indels: 11
0.93 0.04 0.03
Matches are distributed among these distances:
93 28 0.09
94 87 0.27
95 210 0.64
96 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (94 bp):
ATCTTCAATCTATTCCACTGCCAAATGCAGGAGATAGAGTTATCGGCTTTAATGTACTCCACTGT
AGTCAGGGAGGTAAAATCTGCCATCTTTG
Found at i:81065507 original size:189 final size:189
Alignment explanation
Indices: 81065142--81065583 Score: 737
Period size: 189 Copynumber: 2.3 Consensus size: 189
81065132 AAGATCTACA
* *
81065142 ATCTTCAATCTATTCCACTGCCAGATACAGGAGATAGAGTTATCGGCTTCAATGTACTCC-CATG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGAGATAGAGTTATCGGCTTTAATGTACTCCAC-TG
*
81065206 TAGTCAGGGAAGTAAAATCTGCCATCTTTGATCTTCAATCTATTCCACTGCCAAATGCAGAGAGA
65 TAGTCAGGGAAGTAAAATCTGCCATCTTCGATCTTCAATCTATTCCACTGCCAAATGCAGAGAGA
*
81065271 TAGAGTTATCGGCTTTAATGTACTCTACTGTAGTCAGGGAGGTAAAATCTGCCATCTTTG
130 TAGAGTTATCGGCTTTAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTTG
*
81065331 ATCTTCAATCTATTCCACTGCCAAATGCAGAGAGATAGAGTTATCGGCTTTAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAG-GAGATAGAGTTATCGGCTTTAATGTACTCCACTG
* * * *
81065396 TAGTCAGTGAGGTAAAATCTGCCATCTTCGATCTTCAATCTATTCCACTGTCAAATGCAGGGAGA
65 TAGTCAGGGAAGTAAAATCTGCCATCTTCGATCTTCAATCTATTCCACTGCCAAATGCAGAGAGA
*
81065461 TAGAGTTATCGGC-TTCATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTTG
130 TAGAGTTATCGGCTTTAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTTG
81065520 ATC-TCAATCTATTCCACTGCCAAATACCAGGAGATAGGAGTTATCGGCTTTAATGTACTCCACT
1 ATCTTCAATCTATTCCACTGCCAAATA-CAGGAGATA-GAGTTATCGGCTTTAATGTACTCCACT
81065584 NNNNNNNNNN
Statistics
Matches: 238, Mismatches: 11, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
188 28 0.12
189 105 0.44
190 104 0.44
191 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (189 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGGAGATAGAGTTATCGGCTTTAATGTACTCCACTGT
AGTCAGGGAAGTAAAATCTGCCATCTTCGATCTTCAATCTATTCCACTGCCAAATGCAGAGAGAT
AGAGTTATCGGCTTTAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTTG
Found at i:81080408 original size:38 final size:38
Alignment explanation
Indices: 81080357--81080513 Score: 215
Period size: 38 Copynumber: 3.9 Consensus size: 38
81080347 TGATATGAAA
81080357 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTT
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTT
81080395 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATAT
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACC---T-T
* *
81080437 GAAATGTGTAAGACCATGGTTGAAAGATACCATCGCAACCTG
1 ----TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTT
*
81080479 TGTGTAAGACCATGGTTGAAAGATACCATGACAAC
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
81080514 ATGACAGAAA
Statistics
Matches: 107, Mismatches: 4, Indels: 16
0.84 0.03 0.13
Matches are distributed among these distances:
38 69 0.64
41 1 0.01
42 1 0.01
43 1 0.01
46 35 0.33
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.24
Consensus pattern (38 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTT
Found at i:81080462 original size:46 final size:45
Alignment explanation
Indices: 81080395--81080557 Score: 171
Period size: 46 Copynumber: 3.7 Consensus size: 45
81080385 TGGCAACCTT
81080395 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA-ATGAAA
*
81080441 TGTGTAAGACCATGGTTGAAAGATACCATCGCAACC----TG---
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAATGAAA
* *
81080479 TGTGTAAGACCATGGTTGAAAGATACCATGACAACATGACA-GAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA-ATG-AAA
** * * *
81080525 TGAATAAGACCATAGTTGAAAGACACTATGGCA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA
81080558 TCACGTCAAA
Statistics
Matches: 98, Mismatches: 10, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
38 33 0.34
41 2 0.02
42 1 0.01
46 62 0.63
ACGTcount: A:0.39, C:0.17, G:0.23, T:0.22
Consensus pattern (45 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAATGAAA
Found at i:81080483 original size:84 final size:84
Alignment explanation
Indices: 81080346--81080547 Score: 316
Period size: 84 Copynumber: 2.4 Consensus size: 84
81080336 AGTGTGCTCT
* *
81080346 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTTTGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATCGCAACCTGTGTGTAAGACCATGGT
*
81080411 TGAAAGATACCATGGCAAC
66 TGAAAGATACCATGACAAC
81080430 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATCGCAACCTGTGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATCGCAACCTGTGTGTAAGACCATGGT
81080495 TGAAAGATACCATGACAAC
66 TGAAAGATACCATGACAAC
* * ** *
81080514 ATGACA-GAAAATGAATAAGACCATAGTTGAAAGA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGA
81080548 CACTATGGCA
Statistics
Matches: 109, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
83 1 0.01
84 108 0.99
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (84 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATCGCAACCTGTGTGTAAGACCATGGT
TGAAAGATACCATGACAAC
Found at i:81080863 original size:23 final size:25
Alignment explanation
Indices: 81080818--81080864 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
81080808 AATAAATATA
*
81080818 CATAAAATATATGGAAATGATGAAG
1 CATAAAATATATGGAAATAATGAAG
*
81080843 CATAAAATAT-T-GATATAATGAA
1 CATAAAATATATGGAAATAATGAA
81080865 ATGAATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 10 0.50
ACGTcount: A:0.53, C:0.04, G:0.15, T:0.28
Consensus pattern (25 bp):
CATAAAATATATGGAAATAATGAAG
Found at i:81085959 original size:40 final size:40
Alignment explanation
Indices: 81085904--81085989 Score: 154
Period size: 40 Copynumber: 2.1 Consensus size: 40
81085894 TATGTGCATA
* *
81085904 GCATTCGTGTGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCATGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
81085944 GCATTCATGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCATGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
81085984 GCATTC
1 GCATTC
81085990 GTGTTGGTTG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (40 bp):
GCATTCATGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
Found at i:81091833 original size:17 final size:17
Alignment explanation
Indices: 81091808--81091842 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
81091798 ATAGTTCGAT
*
81091808 TCGAGCTTTACTTTGTA
1 TCGAACTTTACTTTGTA
*
81091825 TCGAACTTTGCTTTGTA
1 TCGAACTTTACTTTGTA
81091842 T
1 T
81091843 TGTGGTCATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.17, C:0.17, G:0.17, T:0.49
Consensus pattern (17 bp):
TCGAACTTTACTTTGTA
Found at i:81093173 original size:29 final size:30
Alignment explanation
Indices: 81093131--81093190 Score: 86
Period size: 29 Copynumber: 2.0 Consensus size: 30
81093121 TTATGGAAGA
* *
81093131 GATGGAGAACTTGTTCGTT-AAGAGTTCGT
1 GATGAAGAACTTGTTCGTTGAAGAATTCGT
*
81093160 GATGAAGAACTTGTTTGTTGAAGAATTCGT
1 GATGAAGAACTTGTTCGTTGAAGAATTCGT
81093190 G
1 G
81093191 TCAAGGTGGA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 17 0.63
30 10 0.37
ACGTcount: A:0.27, C:0.08, G:0.30, T:0.35
Consensus pattern (30 bp):
GATGAAGAACTTGTTCGTTGAAGAATTCGT
Found at i:81093269 original size:16 final size:18
Alignment explanation
Indices: 81093234--81093272 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
81093224 AATCCTTATC
*
81093234 AAAATAAAACACAATGGT
1 AAAATAAAACACAATAGT
81093252 AAAATAAAACA-AA-AGT
1 AAAATAAAACACAATAGT
81093268 AAAAT
1 AAAAT
81093273 CCATATAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 7 0.35
17 2 0.10
18 11 0.55
ACGTcount: A:0.69, C:0.08, G:0.08, T:0.15
Consensus pattern (18 bp):
AAAATAAAACACAATAGT
Found at i:81101574 original size:25 final size:26
Alignment explanation
Indices: 81101546--81101596 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
81101536 TTTATTTCAT
81101546 TAAATAAAAAAT-TTTAAAAATATAA
1 TAAATAAAAAATATTTAAAAATATAA
* *
81101571 TAAATCAAATATATTTAAAAATATAA
1 TAAATAAAAAATATTTAAAAATATAA
81101597 AAACAAATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (26 bp):
TAAATAAAAAATATTTAAAAATATAA
Found at i:81101588 original size:26 final size:24
Alignment explanation
Indices: 81101558--81101606 Score: 80
Period size: 26 Copynumber: 2.0 Consensus size: 24
81101548 AATAAAAAAT
81101558 TTTAAAAATATAATAAATCAAATATA
1 TTTAAAAATATAA-AAA-CAAATATA
81101584 TTTAAAAATATAAAAACAAATAT
1 TTTAAAAATATAAAAACAAATAT
81101607 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (24 bp):
TTTAAAAATATAAAAACAAATATA
Found at i:81101604 original size:12 final size:12
Alignment explanation
Indices: 81101589--81101621 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
81101579 ATATATTTAA
81101589 AAATATAAAAAC
1 AAATATAAAAAC
*
81101601 AAATATTAAAAC
1 AAATATAAAAAC
81101613 AAATA-AAAA
1 AAATATAAAA
81101622 TGATACTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 3 0.16
12 16 0.84
ACGTcount: A:0.76, C:0.06, G:0.00, T:0.18
Consensus pattern (12 bp):
AAATATAAAAAC
Found at i:81101616 original size:24 final size:25
Alignment explanation
Indices: 81101561--81101622 Score: 67
Period size: 26 Copynumber: 2.6 Consensus size: 25
81101551 AAAAAATTTT
**
81101561 AAAAATATAATAAATCAAATATATTT
1 AAAAATATAA-AAATCAAATATATAA
81101587 AAAAATATAAAAA-CAAATAT-TAA
1 AAAAATATAAAAATCAAATATATAA
*
81101610 AACAA-ATAAAAAT
1 AAAAATATAAAAAT
81101623 GATACTAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
22 7 0.22
23 5 0.16
24 7 0.22
25 3 0.09
26 10 0.31
ACGTcount: A:0.69, C:0.05, G:0.00, T:0.26
Consensus pattern (25 bp):
AAAAATATAAAAATCAAATATATAA
Found at i:81103255 original size:3 final size:3
Alignment explanation
Indices: 81103249--81103286 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
81103239 ATTTGTAAAT
81103249 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
81103287 TATAGGCGGC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:81107947 original size:21 final size:21
Alignment explanation
Indices: 81107877--81107944 Score: 82
Period size: 21 Copynumber: 3.2 Consensus size: 21
81107867 ACAGTCTGAA
* *
81107877 ACACGAGCGTGTCCTATGGCT
1 ACACGAGCGTGTCCCATGTCT
* *
81107898 ACACAAGCGTGTCCCAGGTCT
1 ACACGAGCGTGTCCCATGTCT
* *
81107919 ACACGGGCGTGTCCCATGTCC
1 ACACGAGCGTGTCCCATGTCT
81107940 ACACG
1 ACACG
81107945 GGCATGTGTG
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 39 1.00
ACGTcount: A:0.21, C:0.34, G:0.26, T:0.19
Consensus pattern (21 bp):
ACACGAGCGTGTCCCATGTCT
Found at i:81108449 original size:4 final size:4
Alignment explanation
Indices: 81108440--81108480 Score: 82
Period size: 4 Copynumber: 10.2 Consensus size: 4
81108430 ATAAATATAA
81108440 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT A
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT A
81108481 AATGTGTATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 37 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (4 bp):
ATTT
Found at i:81110412 original size:31 final size:31
Alignment explanation
Indices: 81110377--81110444 Score: 100
Period size: 31 Copynumber: 2.2 Consensus size: 31
81110367 TATAATTTGA
* *
81110377 TCATTGAACTATTCAAAAGTTTTTATTTAAG
1 TCATTGAACTATTCAAAAGTTTGTATTCAAG
* *
81110408 TCATTGAATTATTCAAATGTTTGTATTCAAG
1 TCATTGAACTATTCAAAAGTTTGTATTCAAG
81110439 TCATTG
1 TCATTG
81110445 TGTTGTTAAG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.32, C:0.10, G:0.12, T:0.46
Consensus pattern (31 bp):
TCATTGAACTATTCAAAAGTTTGTATTCAAG
Found at i:81111009 original size:16 final size:16
Alignment explanation
Indices: 81110976--81111009 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
81110966 GAAGCCTATT
* *
81110976 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
81110992 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
81111008 AA
1 AA
81111010 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:81114403 original size:21 final size:21
Alignment explanation
Indices: 81114326--81114405 Score: 72
Period size: 21 Copynumber: 3.8 Consensus size: 21
81114316 TGTGAAGAGG
*
81114326 GGCACACGACCGTGTGACTGAA
1 GGCACACGCCCGTGTGACT-AA
* * * *
81114348 -ACACACACCCGTGTGAAATGA
1 GGCACACGCCCGTGTG-ACTAA
**
81114369 GGCACACGGTCGTGTGACTAA
1 GGCACACGCCCGTGTGACTAA
81114390 GGCACACGCCCGTGTG
1 GGCACACGCCCGTGTG
81114406 GACCAGGGAC
Statistics
Matches: 43, Mismatches: 13, Indels: 5
0.70 0.21 0.08
Matches are distributed among these distances:
21 30 0.70
22 13 0.30
ACGTcount: A:0.26, C:0.29, G:0.30, T:0.15
Consensus pattern (21 bp):
GGCACACGCCCGTGTGACTAA
Found at i:81115181 original size:7 final size:8
Alignment explanation
Indices: 81115157--81115184 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
81115147 TAATTAGAAT
81115157 AAATTAAA
1 AAATTAAA
81115165 AAATTAAA
1 AAATTAAA
81115173 AAATTAAA
1 AAATTAAA
81115181 AAAT
1 AAAT
81115185 AAGAAATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (8 bp):
AAATTAAA
Found at i:81120299 original size:132 final size:132
Alignment explanation
Indices: 81120120--81120403 Score: 403
Period size: 132 Copynumber: 2.2 Consensus size: 132
81120110 GTATCCATTT
* *
81120120 AAAAATTTTTTAAAACGAAGACGAGATTCGATATTTGGCAATTCGCGGAATAGTGCCCTAACGTG
1 AAAAATTCTTTAAAACGAAGACGAGATGCGATATTTGGCAATTCGCGGAATAGTGCCCTAACGTG
* * *
81120185 TTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTCGTGCCTT
66 TTGGGTTGCAATTTCGCGTTTGCTCAAAATAACCAAATATCCCTCCAAAATTTCACTCGTGCCTT
81120250 TC
131 TC
* * *
81120252 AAAAATTCTTTAAAACGGAGGCGATG-TGCGATATTTGGCAATTCGCGGAATCGTGCCCTAACGT
1 AAAAATTCTTTAAAACGAAGACGA-GATGCGATATTTGGCAATTCGCGGAATAGTGCCCTAACGT
* * * * *
81120316 GTTGGGTTGCAATTTCTCGTTTGCTTAAAATAACCAAATATCCCTCCAAAATTTCACGCATGTC-
65 GTTGGGTTGCAATTTCGCGTTTGCTCAAAATAACCAAATATCCCTCCAAAATTTCACTCGTGCCT
81120380 TTC
130 TTC
81120383 TAAAAA-TCATTTAAAACGAAG
1 -AAAAATTC-TTTAAAACGAAG
81120404 GCAATATTCG
Statistics
Matches: 135, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
131 5 0.04
132 129 0.96
133 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (132 bp):
AAAAATTCTTTAAAACGAAGACGAGATGCGATATTTGGCAATTCGCGGAATAGTGCCCTAACGTG
TTGGGTTGCAATTTCGCGTTTGCTCAAAATAACCAAATATCCCTCCAAAATTTCACTCGTGCCTT
TC
Found at i:81120487 original size:131 final size:132
Alignment explanation
Indices: 81120120--81120487 Score: 375
Period size: 132 Copynumber: 2.8 Consensus size: 132
81120110 GTATCCATTT
* * * * * * * *
81120120 AAAAATTTTTTAAAACGAAGACGAGATTCGATATTTGGCAATTCGCGGAAT-AGTGCCCTAACGT
1 AAAAATTCTTTAAAACGAAGGCAATATGCGACATTTGACAATTCGAGGAATCA-TGCCCTAACGT
* * * * * *
81120184 GTTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTCGTGCCT
65 GCTGGGTTGCAATTTCTCGTTTGCTTAAAATAATCGAATATCCCTCCAAAATTTCACGCATGCCT
81120249 TTC
130 TTC
* * * * * * *
81120252 AAAAATTCTTTAAAACGGAGGCGATGTGCGATATTTGGCAATTCGCGGAATCGTGCCCTAACGTG
1 AAAAATTCTTTAAAACGAAGGCAATATGCGACATTTGACAATTCGAGGAATCATGCCCTAACGTG
* * * *
81120317 TTGGGTTGCAATTTCTCGTTTGCTTAAAATAACCAAATATCCCTCCAAAATTTCACGCATGTC-T
66 CTGGGTTGCAATTTCTCGTTTGCTTAAAATAATCGAATATCCCTCCAAAATTTCACGCATGCCTT
81120381 TC
131 TC
* * * * **
81120383 TAAAAA-TCATTTAAAACGAAGGCAATATTCGGCGTTTGACGATTC-AGGAATCATGCCCTATTG
1 -AAAAATTC-TTTAAAACGAAGGCAATATGCGACATTTGACAATTCGAGGAATCATGCCCTAACG
** *
81120446 TGCTGGGTTGTGATTTCTCGTTTGCTTAAAACAATCGAATAT
64 TGCTGGGTTGCAATTTCTCGTTTGCTTAAAATAATCGAATAT
81120488 TCCTTTAGGT
Statistics
Matches: 199, Mismatches: 34, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
131 55 0.28
132 144 0.72
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.32
Consensus pattern (132 bp):
AAAAATTCTTTAAAACGAAGGCAATATGCGACATTTGACAATTCGAGGAATCATGCCCTAACGTG
CTGGGTTGCAATTTCTCGTTTGCTTAAAATAATCGAATATCCCTCCAAAATTTCACGCATGCCTT
TC
Found at i:81120502 original size:131 final size:128
Alignment explanation
Indices: 81120298--81120649 Score: 305
Period size: 129 Copynumber: 2.7 Consensus size: 128
81120288 GGCAATTCGC
* * ** * * *
81120298 GGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCTCGTTTGCTTAAAATAACCAAATATCCCTCC
1 GGAATCGTGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGCTTAAAACAATCGAATATCCCTCC
* * *
81120363 AAAATTTCACGCATGTCTT-CTAAAAATCATTT-AAAACGAAGGCAATATTCGGCGTTTGACGAT
66 AAAATTTCACGCATGT-TTACTAAAAA-CATTTCAAAACAAAAG--ATATTCGACGTTTGACGAT
81120426 TCA
127 T-A
* * * **
81120429 GGAATCATGCCCTATTGTGCTGGGTTGTGATTTCTCGTTTGCTTAAAACAATCGAATATTCCTTT
1 GGAATCGTGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGCTTAAAACAATCGAATATCCCTCC
*** * * * * * * *
81120494 AGGTTTTCACTCATGTTTATTAAAAACCTTTCAAAACAAAAGATGTTCGATGTTTGGCGATTG
66 AAAATTTCACGCATGTTTACTAAAAACATTTCAAAACAAAAGATATTCGACGTTTGACGATTA
* * * *
81120557 GAGAATCGTGCCCTATCGTGCTGGGTTGTGCTTTTTCATTTGCTCT-AAACAATCGAAGATCCCT
1 G-GAATCGTGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGCT-TAAAACAATCGAATATCCCT
* * ** * *
81120621 TCAAAGTTTCATTCACGTTTTCTAAAAAC
64 CCAAAATTTCACGCATGTTTACTAAAAAC
81120650 CCTCTAAAAC
Statistics
Matches: 177, Mismatches: 40, Indels: 10
0.78 0.18 0.04
Matches are distributed among these distances:
128 1 0.01
129 90 0.51
130 7 0.04
131 79 0.45
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.35
Consensus pattern (128 bp):
GGAATCGTGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGCTTAAAACAATCGAATATCCCTCC
AAAATTTCACGCATGTTTACTAAAAACATTTCAAAACAAAAGATATTCGACGTTTGACGATTA
Found at i:81120607 original size:129 final size:132
Alignment explanation
Indices: 81120146--81120716 Score: 344
Period size: 132 Copynumber: 4.4 Consensus size: 132
81120136 GAAGACGAGA
* * * * * ** * * *
81120146 TTCGATATTTGGCAATTCGCG-GAATAGTGCCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTC
1 TTCGATGTTTGGCAGTTCG-GAGAATCGTGCCCTATCGTGCTGGGTTGTGATTTCTCATTTGCTT
* * * ** * ** * ** *
81120210 AAAATAATCGAATATCCCTTCAAAATTTCACTCGTGCCTTTC-AAAAATTCTTTAAAAC-GGAGG
65 AAAACAATCGAAGATCCCTTCAAAGTTTCACTCACG-TTTTCTAAAAACCCTCTAAAACAAAAGA
*
81120273 CGATG
129 AG-TG
* * * * * ** *
81120278 TGCGATATTTGGCAATTCGCG-GAATCGTGCCCTAACGTGTTGGGTTGCAATTTCTCGTTTGCTT
1 TTCGATGTTTGGCAGTTCG-GAGAATCGTGCCCTATCGTGCTGGGTTGTGATTTCTCATTTGCTT
* * * * * * * * * * * * * *
81120342 AAAATAACCAAATATCCCTCCAAAATTTCACGCATGTCTTCTAAAAATCATTTAAAACGAAGGCA
65 AAAACAATCGAAGATCCCTTCAAAGTTTCACTCACGTTTTCTAAAAACCCTCTAAAACAAAAG-A
*
81120407 A-TA
129 AGTG
** * * * * *
81120410 TTCGGCGTTTGAC-GATTCAG-GAATCATGCCCTATTGTGCTGGGTTGTGATTTCTCGTTTGCTT
1 TTCGATGTTTGGCAG-TTCGGAGAATCGTGCCCTATCGTGCTGGGTTGTGATTTCTCATTTGCTT
* * * * * *
81120473 AAAACAATCGAATATTCCTT-TAGGTTTTCACTCATGTTTAT-TAAAAA-CCTTTCAAAACAAAA
65 AAAACAATCGAAGATCCCTTCAAAG-TTTCACTCACGTTT-TCTAAAAACCCTCT-AAAACAAAA
81120535 G-A-TG
127 GAAGTG
* *
81120539 TTCGATGTTTGGC-GATT-GGAGAATCGTGCCCTATCGTGCTGGGTTGTGCTTTTTCATTTGCTC
1 TTCGATGTTTGGCAG-TTCGGAGAATCGTGCCCTATCGTGCTGGGTTGTGATTTCTCATTTGCT-
* *
81120602 T-AAACAATCGAAGATCCCTTCAAAGTTTCATTCACGTTTTCTAAAAACCCTCTAAAACGAAAGA
64 TAAAACAATCGAAGATCCCTTCAAAGTTTCACTCACGTTTTCTAAAAACCCTCTAAAACAAAAGA
81120666 AGTG
129 AGTG
* * *
81120670 TTTGATGTTTGGCAGTTCGGGGAATAGTGCCCTATCGTGCTGGGTTG
1 TTCGATGTTTGGCAGTTCGGAGAATCGTGCCCTATCGTGCTGGGTTG
81120717 CAATCTCCCG
Statistics
Matches: 357, Mismatches: 66, Indels: 32
0.78 0.15 0.07
Matches are distributed among these distances:
128 2 0.01
129 97 0.27
130 13 0.04
131 98 0.27
132 146 0.41
133 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.34
Consensus pattern (132 bp):
TTCGATGTTTGGCAGTTCGGAGAATCGTGCCCTATCGTGCTGGGTTGTGATTTCTCATTTGCTTA
AAACAATCGAAGATCCCTTCAAAGTTTCACTCACGTTTTCTAAAAACCCTCTAAAACAAAAGAAG
TG
Found at i:81122132 original size:28 final size:29
Alignment explanation
Indices: 81122092--81122155 Score: 78
Period size: 28 Copynumber: 2.2 Consensus size: 29
81122082 CTTTAATAAT
81122092 TTTTAAAAAATTAAA-T-TAATTTTTATTA
1 TTTTAAAAAATTAAAGTGT-ATTTTTATTA
* *
81122120 TTTTGAAATATTAAAGTGTATTTTTATTA
1 TTTTAAAAAATTAAAGTGTATTTTTATTA
81122149 TTATTAA
1 TT-TTAA
81122156 TTTAGGGTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
28 13 0.43
29 13 0.43
30 4 0.13
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.55
Consensus pattern (29 bp):
TTTTAAAAAATTAAAGTGTATTTTTATTA
Found at i:81130947 original size:34 final size:34
Alignment explanation
Indices: 81130904--81130971 Score: 118
Period size: 34 Copynumber: 2.0 Consensus size: 34
81130894 AGGCACAAGG
*
81130904 TGCTCTCTAGGTGCTAGAAACCTTGTATTGCCTC
1 TGCTCTCTAGGCGCTAGAAACCTTGTATTGCCTC
*
81130938 TGCTCTCTAGGCGCTAGAACCCTTGTATTGCCTC
1 TGCTCTCTAGGCGCTAGAAACCTTGTATTGCCTC
81130972 ACGAGCAAGG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.16, C:0.29, G:0.21, T:0.34
Consensus pattern (34 bp):
TGCTCTCTAGGCGCTAGAAACCTTGTATTGCCTC
Found at i:81134201 original size:21 final size:21
Alignment explanation
Indices: 81134169--81134222 Score: 65
Period size: 22 Copynumber: 2.6 Consensus size: 21
81134159 TACTGGTAAA
*
81134169 AAATGTTCTAATA-TTGCACG
1 AAATTTTCTAATAGTTGCACG
81134189 AAATTTTCATAATAGTTGCACG
1 AAATTTTC-TAATAGTTGCACG
* *
81134211 TAATTTTTTAAT
1 AAATTTTCTAAT
81134223 TAATTGTGAG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
20 7 0.24
21 9 0.31
22 13 0.45
ACGTcount: A:0.35, C:0.11, G:0.11, T:0.43
Consensus pattern (21 bp):
AAATTTTCTAATAGTTGCACG
Found at i:81136810 original size:38 final size:38
Alignment explanation
Indices: 81136767--81136843 Score: 127
Period size: 38 Copynumber: 2.0 Consensus size: 38
81136757 TTTCAAATTA
81136767 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
* * *
81136805 ACATGTTTAACCGTGGTATATCCCCTTAGCACCACGTT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
81136843 A
1 A
81136844 ATGAATCAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.29
Consensus pattern (38 bp):
ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
Found at i:81140460 original size:10 final size:10
Alignment explanation
Indices: 81140429--81140461 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
81140419 ATTTAAGAAA
81140429 AATAATATAT
1 AATAATATAT
81140439 AATAAGTA-AT
1 AATAA-TATAT
81140449 AATAATATAT
1 AATAATATAT
81140459 AAT
1 AAT
81140462 TAAAAATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
9 2 0.10
10 17 0.81
11 2 0.10
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (10 bp):
AATAATATAT
Found at i:81140460 original size:17 final size:18
Alignment explanation
Indices: 81140429--81140472 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 18
81140419 ATTTAAGAAA
81140429 AATAAT-ATATAATAAGT
1 AATAATAATATAATAAGT
*
81140446 AATAATAATAT-ATAATT
1 AATAATAATATAATAAGT
*
81140463 AAAAATAATA
1 AATAATAATA
81140473 CTTATAACAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 20 0.83
18 4 0.17
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (18 bp):
AATAATAATATAATAAGT
Found at i:81140469 original size:20 final size:20
Alignment explanation
Indices: 81140429--81140539 Score: 70
Period size: 20 Copynumber: 5.5 Consensus size: 20
81140419 ATTTAAGAAA
*
81140429 AATAATATATAA-TAAGTAAT
1 AATAATATATAATTAA-AAAT
81140449 AATAATATATAATTAAAAAT
1 AATAATATATAATTAAAAAT
* **
81140469 AATACT-TATAACAAAATAATTT
1 AATAATATATAATTAAA-AA--T
* *
81140491 TATAATATATAATATAAAAGT
1 AATAATATATAAT-TAAAAAT
* *
81140512 AA-AAT-TAGAATAAAAAAT
1 AATAATATATAATTAAAAAT
81140530 AAT-ATATATA
1 AATAATATATA
81140540 GAATAATATA
Statistics
Matches: 69, Mismatches: 14, Indels: 17
0.69 0.14 0.17
Matches are distributed among these distances:
18 9 0.13
19 16 0.23
20 25 0.36
21 5 0.07
22 5 0.07
23 6 0.09
24 3 0.04
ACGTcount: A:0.61, C:0.02, G:0.03, T:0.34
Consensus pattern (20 bp):
AATAATATATAATTAAAAAT
Found at i:81140543 original size:21 final size:21
Alignment explanation
Indices: 81140495--81140558 Score: 64
Period size: 21 Copynumber: 3.1 Consensus size: 21
81140485 TAATTTTATA
*
81140495 ATATATAAT-ATAAAAGTAAA-
1 ATATAGAATAATAAAA-TAAAT
81140515 AT-TAGAATAA-AAAATAATAT
1 ATATAGAATAATAAAATAA-AT
*
81140535 ATATAGAATAATATAATAAAT
1 ATATAGAATAATAAAATAAAT
81140556 ATA
1 ATA
81140559 GGACTAAATT
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
18 3 0.08
19 10 0.27
20 5 0.14
21 13 0.35
22 6 0.16
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (21 bp):
ATATAGAATAATAAAATAAAT
Found at i:81143789 original size:18 final size:19
Alignment explanation
Indices: 81143768--81143807 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
81143758 GAAACAGGAG
81143768 GAAAAAG-AAAGGAAGAAA
1 GAAAAAGAAAAGGAAGAAA
*
81143786 GAAAAAGAAAAGGGAGAAA
1 GAAAAAGAAAAGGAAGAAA
81143805 GAA
1 GAA
81143808 GGAGACGAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (19 bp):
GAAAAAGAAAAGGAAGAAA
Found at i:81144698 original size:24 final size:25
Alignment explanation
Indices: 81144632--81144703 Score: 60
Period size: 24 Copynumber: 3.0 Consensus size: 25
81144622 GAGCATCTCG
* * *
81144632 TTAT-TAGCTCTTATGAGCTTCTCG
1 TTATATAGCTCTTAGGAGCTTCCCA
* *
81144656 TTATATGGTTCTT-GCGAGCTTCCCA
1 TTATATAGCTCTTAG-GAGCTTCCCA
*
81144681 TTA-ATAGCTCTTAGGAGCATCCC
1 TTATATAGCTCTTAGGAGCTTCCC
81144704 GATTGGTTGT
Statistics
Matches: 37, Mismatches: 8, Indels: 6
0.73 0.16 0.12
Matches are distributed among these distances:
24 19 0.51
25 18 0.49
ACGTcount: A:0.19, C:0.24, G:0.18, T:0.39
Consensus pattern (25 bp):
TTATATAGCTCTTAGGAGCTTCCCA
Found at i:81144869 original size:24 final size:25
Alignment explanation
Indices: 81144831--81144919 Score: 94
Period size: 24 Copynumber: 3.7 Consensus size: 25
81144821 CTCTCCGGAG
*
81144831 CTTCCTGATATTGGCTCGC-TTGAA
1 CTTCCCGATATTGGCTCGCTTTGAA
**
81144855 CTTTTCGATATTGGCTC-CTTTGAA
1 CTTCCCGATATTGGCTCGCTTTGAA
* *
81144879 CTTCCCGATATTGGCTCG-TATGAG
1 CTTCCCGATATTGGCTCGCTTTGAA
* *
81144903 CTTCCCGTTAATGGCTC
1 CTTCCCGATATTGGCTC
81144920 TCCTAAACTT
Statistics
Matches: 54, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
23 1 0.02
24 53 0.98
ACGTcount: A:0.16, C:0.26, G:0.20, T:0.38
Consensus pattern (25 bp):
CTTCCCGATATTGGCTCGCTTTGAA
Found at i:81144977 original size:25 final size:24
Alignment explanation
Indices: 81144890--81144984 Score: 84
Period size: 25 Copynumber: 3.8 Consensus size: 24
81144880 TTCCCGATAT
*
81144890 TGGCTCGTATGAGCTTCCCGTTAA
1 TGGCTCGTATGAGCTTCCCGTTTA
* * *
81144914 TGGCTC-TCCTAAACTTCCCGTTATA
1 TGGCTCGT-ATGAGCTTCCCGTT-TA
* * *
81144939 TAGCTCGAAAGAGCTTCCCGTTTA
1 TGGCTCGTATGAGCTTCCCGTTTA
81144963 TGTGCTCGTATGAGCATTCCCG
1 TG-GCTCGTATGAGC-TTCCCG
81144985 AATATGAATT
Statistics
Matches: 53, Mismatches: 13, Indels: 8
0.72 0.18 0.11
Matches are distributed among these distances:
23 1 0.02
24 20 0.38
25 26 0.49
26 6 0.11
ACGTcount: A:0.19, C:0.27, G:0.21, T:0.33
Consensus pattern (24 bp):
TGGCTCGTATGAGCTTCCCGTTTA
Found at i:81149027 original size:46 final size:45
Alignment explanation
Indices: 81148961--81149051 Score: 105
Period size: 46 Copynumber: 2.0 Consensus size: 45
81148951 CCCCTTAATA
* *
81148961 CTTATTCTAAATTTCTTTATATATATTATTTTAAACTTGTCTTATT
1 CTTATTCTAAATTTCTTTATATAGATTATTTTAAAC-TCTCTTATT
* *
81149007 CTTATT-TAAACTTGTC-TTATATAGCTTCTTTTAAACTCTCTTATT
1 CTTATTCTAAA-TT-TCTTTATATAGATTATTTTAAACTCTCTTATT
81149052 TGTTTTAAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
45 12 0.31
46 25 0.64
47 2 0.05
ACGTcount: A:0.26, C:0.14, G:0.03, T:0.56
Consensus pattern (45 bp):
CTTATTCTAAATTTCTTTATATAGATTATTTTAAACTCTCTTATT
Found at i:81149041 original size:25 final size:21
Alignment explanation
Indices: 81148989--81149070 Score: 71
Period size: 21 Copynumber: 3.9 Consensus size: 21
81148979 ATATATATTA
81148989 TTTTAAACTTGTCTTATTCTT
1 TTTTAAACTTGTCTTATTCTT
*
81149010 ATTTAAACTTGTCTTATATAGCTT
1 TTTTAAACTTGTCTTAT-T--CTT
* *
81149034 CTTTTAAAC-TCTCTTATT-TG
1 -TTTTAAACTTGTCTTATTCTT
*
81149054 TTTTAAA-TTGTTTTATT
1 TTTTAAACTTGTCTTATT
81149071 ATTGTTCATC
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
19 14 0.28
20 1 0.02
21 16 0.32
22 1 0.02
23 1 0.02
24 10 0.20
25 7 0.14
ACGTcount: A:0.23, C:0.12, G:0.06, T:0.59
Consensus pattern (21 bp):
TTTTAAACTTGTCTTATTCTT
Found at i:81150023 original size:26 final size:26
Alignment explanation
Indices: 81149994--81150049 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
81149984 TGATACAAAT
81149994 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81150020 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81150046 TGAT
1 TGAT
81150050 GAGAATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:81156062 original size:26 final size:26
Alignment explanation
Indices: 81156033--81156112 Score: 142
Period size: 26 Copynumber: 3.1 Consensus size: 26
81156023 ATACAAATTT
81156033 ATAATGGGTTAGGTAAATGTTCCATG
1 ATAATGGGTTAGGTAAATGTTCCATG
* *
81156059 ATAATGGGTTAGGTATATGTTTCATG
1 ATAATGGGTTAGGTAAATGTTCCATG
81156085 ATAATGGGTTAGGTAAATGTTCCATG
1 ATAATGGGTTAGGTAAATGTTCCATG
81156111 AT
1 AT
81156113 GGGAATTTCA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.30, C:0.06, G:0.26, T:0.38
Consensus pattern (26 bp):
ATAATGGGTTAGGTAAATGTTCCATG
Found at i:81160084 original size:36 final size:34
Alignment explanation
Indices: 81160007--81160087 Score: 94
Period size: 36 Copynumber: 2.3 Consensus size: 34
81159997 TGAGTATTGG
*
81160007 TATTGTGA-TATTGAATTGAATTGAATTCATGAA
1 TATTGTGATTATTGAATTGAATTGAATTAATGAA
*
81160040 TATATGTGATTGTTGATATTGAATTGAATGTAAGTGAA
1 TAT-TGTGATTATTGA-ATTGAATTGAAT-TAA-TGAA
81160078 T-TTGTGATTA
1 TATTGTGATTA
81160088 ATGTGTAATG
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
33 3 0.08
34 5 0.12
35 5 0.12
36 19 0.47
37 3 0.08
38 5 0.12
ACGTcount: A:0.33, C:0.01, G:0.21, T:0.44
Consensus pattern (34 bp):
TATTGTGATTATTGAATTGAATTGAATTAATGAA
Found at i:81162458 original size:23 final size:22
Alignment explanation
Indices: 81162403--81162465 Score: 63
Period size: 23 Copynumber: 2.7 Consensus size: 22
81162393 CTAGAATTTT
* *
81162403 TCTCTTCTTTTTTTTTCTTCTCC
1 TCTCTTC-TTTTTTTCCTTCTTC
*
81162426 TCCTCCTCTTTTTTTCCTTCTTC
1 T-CTCTTCTTTTTTTCCTTCTTC
81162449 TCTGCTTCTTCTTTTTC
1 TCT-CTTCTT-TTTTTC
81162466 TTTTACTACC
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
22 2 0.06
23 20 0.61
24 11 0.33
ACGTcount: A:0.00, C:0.33, G:0.02, T:0.65
Consensus pattern (22 bp):
TCTCTTCTTTTTTTCCTTCTTC
Found at i:81162461 original size:26 final size:24
Alignment explanation
Indices: 81162404--81162469 Score: 71
Period size: 26 Copynumber: 2.6 Consensus size: 24
81162394 TAGAATTTTT
81162404 CTCTTCTTTTTTTTTCTTCTCCTC
1 CTCTTCTTTTTTTTTCTTCTCCTC
*
81162428 CTCCTCTTTTTTTCCTTCTTCT-CTGC
1 CTCTTCTTTTTTT--TTCTTCTCCT-C
*
81162454 TTCTTCTTTTTCTTTT
1 CTCTTCTTTTT-TTTT
81162470 ACTACCTAGC
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
24 12 0.34
25 4 0.11
26 17 0.49
27 2 0.06
ACGTcount: A:0.00, C:0.32, G:0.02, T:0.67
Consensus pattern (24 bp):
CTCTTCTTTTTTTTTCTTCTCCTC
Found at i:81164368 original size:3 final size:3
Alignment explanation
Indices: 81164360--81164404 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
81164350 CTACTTTAAT
81164360 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
81164405 CTACTACTTC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:81164633 original size:20 final size:19
Alignment explanation
Indices: 81164610--81164655 Score: 65
Period size: 20 Copynumber: 2.4 Consensus size: 19
81164600 AATACTACGC
* *
81164610 TATATATATTTTTGTATTAT
1 TATATATATTTTT-AAATAT
81164630 TATATATATTTTTAAATAT
1 TATATATATTTTTAAATAT
81164649 TATATAT
1 TATATAT
81164656 TGAGTATTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 11 0.46
20 13 0.54
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (19 bp):
TATATATATTTTTAAATAT
Found at i:81164902 original size:24 final size:26
Alignment explanation
Indices: 81164857--81164904 Score: 66
Period size: 24 Copynumber: 1.9 Consensus size: 26
81164847 TTAATACATG
81164857 TTTTATATATGTATATATTATGTATA
1 TTTTATATATGTATATATTATGTATA
81164883 TTTTA-ATAT-TATAT-TATATGTA
1 TTTTATATATGTATATAT-TATGTA
81164905 CATACTCATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 1 0.05
24 11 0.52
25 4 0.19
26 5 0.24
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.58
Consensus pattern (26 bp):
TTTTATATATGTATATATTATGTATA
Found at i:81168612 original size:31 final size:29
Alignment explanation
Indices: 81168593--81168664 Score: 83
Period size: 29 Copynumber: 2.4 Consensus size: 29
81168583 AAAATAATAG
**
81168593 CATAAGTGACTAAAACGTAACATTTCAAA
1 CATAAGTGACTAAAACGTAACAAATCAAA
81168622 CATAAGTGACTAAAACGTAACCTGAAA-CAAA
1 CATAAGTGACTAAAACGTAA-C--AAATCAAA
*
81168653 CAAAAGTGACTA
1 CATAAGTGACTA
81168665 TTTTTGTAGT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
29 20 0.54
30 1 0.03
31 15 0.41
32 1 0.03
ACGTcount: A:0.50, C:0.18, G:0.12, T:0.19
Consensus pattern (29 bp):
CATAAGTGACTAAAACGTAACAAATCAAA
Found at i:81170278 original size:25 final size:26
Alignment explanation
Indices: 81170233--81170281 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
81170223 TGGTAAATTA
*
81170233 AATATTTTAAAATTTTAAATATAACG
1 AATATTTTAAAAATTTAAATATAACG
81170259 AATA-TTTAAATAATTT-AATATAA
1 AATATTTTAAA-AATTTAAATATAA
81170282 ATTATGAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 13 0.62
26 8 0.38
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (26 bp):
AATATTTTAAAAATTTAAATATAACG
Found at i:81177796 original size:18 final size:20
Alignment explanation
Indices: 81177775--81177815 Score: 59
Period size: 18 Copynumber: 2.1 Consensus size: 20
81177765 AAAATATTTA
*
81177775 TTTTGATGT-TTTTA-ATAT
1 TTTTGATGTATTATATATAT
81177793 TTTTGATGTATTATATATAT
1 TTTTGATGTATTATATATAT
81177813 TTT
1 TTT
81177816 AAAATTATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 9 0.45
19 4 0.20
20 7 0.35
ACGTcount: A:0.24, C:0.00, G:0.10, T:0.66
Consensus pattern (20 bp):
TTTTGATGTATTATATATAT
Found at i:81177846 original size:12 final size:12
Alignment explanation
Indices: 81177816--81177848 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
81177806 TATATATTTT
81177816 AAAATT-ATATA
1 AAAATTAATATA
81177827 AAAA-TAATATA
1 AAAATTAATATA
81177838 AAAATTAATAT
1 AAAATTAATAT
81177849 GGGCGGGCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:81178507 original size:39 final size:39
Alignment explanation
Indices: 81178452--81178529 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
81178442 TTCCAGTTAA
*
81178452 ACAATACAATTGTCACAAAAGCTATTATAACATGAAAAC
1 ACAATACAATTATCACAAAAGCTATTATAACATGAAAAC
81178491 ACAATACAATTATCACAAAAGCTATTATAACATGAAAAC
1 ACAATACAATTATCACAAAAGCTATTATAACATGAAAAC
81178530 TAGGCATTCC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.53, C:0.18, G:0.06, T:0.23
Consensus pattern (39 bp):
ACAATACAATTATCACAAAAGCTATTATAACATGAAAAC
Found at i:81180293 original size:22 final size:23
Alignment explanation
Indices: 81180251--81180293 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
81180241 AAGTCTCCGT
* *
81180251 ACGCCAGCATGGCTCCCGTACAC
1 ACGCCAGCATCGCACCCGTACAC
81180274 ACGCCAGCA-CGCACCCGTAC
1 ACGCCAGCATCGCACCCGTAC
81180294 CTGCAAGAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.23, C:0.47, G:0.21, T:0.09
Consensus pattern (23 bp):
ACGCCAGCATCGCACCCGTACAC
Found at i:81181968 original size:15 final size:16
Alignment explanation
Indices: 81181945--81181988 Score: 54
Period size: 18 Copynumber: 2.7 Consensus size: 16
81181935 ATGCTTTTCG
*
81181945 TCATGTATTTTTG-TA
1 TCATATATTTTTGATA
81181960 TCATATATTTTTGTACTA
1 TCATATATTTTTG-A-TA
81181978 TCATATATTTT
1 TCATATATTTT
81181989 GTTAACTTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
15 12 0.48
18 13 0.52
ACGTcount: A:0.25, C:0.09, G:0.07, T:0.59
Consensus pattern (16 bp):
TCATATATTTTTGATA
Found at i:81182782 original size:131 final size:132
Alignment explanation
Indices: 81182535--81182785 Score: 360
Period size: 131 Copynumber: 1.9 Consensus size: 132
81182525 ATAATCATTC
** *
81182535 AAAAGTTCTTCAAAACGAAGACGAGATTCGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTG
1 AAAAGTTCTTCAAAACGAAGACGAGATTCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
*** * * *
81182600 TTGGGTTGCAATTTCGCGTTTGTTCAAAATAATCGAATATCACATCGAAATTTCACTCGCGTCTT
66 TCAAGTTGCAATTTCGCGTTTGTCCAAAATAATCGAACATCACATCAAAATTTCACTCGCGTCTT
81182665 TT
131 TT
81182667 AAAA-TTCTTCAAAACGAAGACGAGATTCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
1 AAAAGTTCTTCAAAACGAAGACGAGATTCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
* * * * * *
81182731 TCAAGTTGCAATTTTGTGTTTGTCCAAAGTAATCGAGCATCCCTTCAAAATTTCA
66 TCAAGTTGCAATTTCGCGTTTGTCCAAAATAATCGAACATCACATCAAAATTTCA
81182786 TTCATATCTT
Statistics
Matches: 104, Mismatches: 15, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
131 100 0.96
132 4 0.04
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (132 bp):
AAAAGTTCTTCAAAACGAAGACGAGATTCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
TCAAGTTGCAATTTCGCGTTTGTCCAAAATAATCGAACATCACATCAAAATTTCACTCGCGTCTT
TT
Found at i:81182801 original size:131 final size:132
Alignment explanation
Indices: 81182535--81182816 Score: 350
Period size: 131 Copynumber: 2.1 Consensus size: 132
81182525 ATAATCATTC
* ** *
81182535 AAAAGTTCTTCAAAACGAAGACGAGATTCGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTG
1 AAAAATTCTTCAAAACGAAGACGAGATTCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
*** * * * * *
81182600 TTGGGTTGCAATTTCGCGTTTGTTCAAAATAATCGAATATCACATCGAAATTTCACTCGCGTCTT
66 TCAAGTTGCAATTTCGCGTTTGTCCAAAATAATCGAACATCACATCAAAATTTCACTCACATCTT
81182665 -T
131 CT
*
81182666 TAAAATTCTTCAAAACGAAGACGAGATTCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
1 AAAAATTCTTCAAAACGAAGACGAGATTCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
* * * * * * * *
81182731 TCAAGTTGCAATTTTGTGTTTGTCCAAAGTAATCGAGCATCCCTTCAAAATTTCATTCATATCTT
66 TCAAGTTGCAATTTCGCGTTTGTCCAAAATAATCGAACATCACATCAAAATTTCACTCACATCTT
81182796 CT
131 CT
* *
81182798 AAAAATTATTTAAAACGAA
1 AAAAATTCTTCAAAACGAA
81182817 AGCTATATTC
Statistics
Matches: 126, Mismatches: 24, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
131 109 0.87
132 17 0.13
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.32
Consensus pattern (132 bp):
AAAAATTCTTCAAAACGAAGACGAGATTCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
TCAAGTTGCAATTTCGCGTTTGTCCAAAATAATCGAACATCACATCAAAATTTCACTCACATCTT
CT
Found at i:81183859 original size:25 final size:25
Alignment explanation
Indices: 81183809--81183861 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 25
81183799 TACTTTTATA
*
81183809 TATTATTATGTACATTTATTAGTAT
1 TATTATTATGTACATTTATTACTAT
81183834 TATTAGTTATGTATC-TTTA-TACTAT
1 TATTA-TTATGTA-CATTTATTACTAT
81183859 TAT
1 TAT
81183862 AGTATATTCC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
25 13 0.52
26 11 0.44
27 1 0.04
ACGTcount: A:0.30, C:0.06, G:0.08, T:0.57
Consensus pattern (25 bp):
TATTATTATGTACATTTATTACTAT
Found at i:81184224 original size:21 final size:24
Alignment explanation
Indices: 81184186--81184237 Score: 65
Period size: 22 Copynumber: 2.3 Consensus size: 24
81184176 CTTTATTATA
81184186 TATATATTCTTATATATTATG-TG
1 TATATATTCTTATATATTATGTTG
* *
81184209 TATATATT-TTA-GTATTATGTTT
1 TATATATTCTTATATATTATGTTG
81184231 TATATAT
1 TATATAT
81184238 CTATCTTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 7 0.27
22 11 0.42
23 8 0.31
ACGTcount: A:0.31, C:0.02, G:0.08, T:0.60
Consensus pattern (24 bp):
TATATATTCTTATATATTATGTTG
Found at i:81197733 original size:16 final size:16
Alignment explanation
Indices: 81197704--81197774 Score: 106
Period size: 16 Copynumber: 4.4 Consensus size: 16
81197694 GTTTGGCTCA
81197704 CTGTAATGGAATAGAG
1 CTGTAATGGAATAGAG
* *
81197720 CTGCAATTGAATAGAG
1 CTGTAATGGAATAGAG
*
81197736 CTGTAATGGAATAAAG
1 CTGTAATGGAATAGAG
81197752 CTGTAATGGAATAGAG
1 CTGTAATGGAATAGAG
*
81197768 TTGTAAT
1 CTGTAAT
81197775 CAGTAATTCA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.38, C:0.07, G:0.27, T:0.28
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:81197858 original size:39 final size:41
Alignment explanation
Indices: 81197756--81197861 Score: 101
Period size: 44 Copynumber: 2.5 Consensus size: 41
81197746 ATAAAGCTGT
81197756 AATGGAATAGA-GTTGTAATCAGTAATTCAACTGTTTGGTTG
1 AATGGAATAGATGTTGTAAT-AGTAATTCAACTGTTTGGTTG
* * ***
81197797 AATGGAATGGAATAGAACTGTAATAGT-ATTCTTGTGTTTGGTTG
1 AATGGAATAG-AT-G--TTGTAATAGTAATTCAACTGTTTGGTTG
81197841 AATGGAAT-GATGTTGTAATAG
1 AATGGAATAGATGTTGTAATAG
81197862 AATAAGAAAA
Statistics
Matches: 54, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
39 8 0.15
41 10 0.19
42 3 0.06
43 1 0.02
44 23 0.43
45 3 0.06
46 6 0.11
ACGTcount: A:0.32, C:0.05, G:0.26, T:0.37
Consensus pattern (41 bp):
AATGGAATAGATGTTGTAATAGTAATTCAACTGTTTGGTTG
Found at i:81197915 original size:28 final size:28
Alignment explanation
Indices: 81197882--81197937 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
81197872 AAAACTAAAA
81197882 TGACCAGAATACCCTTAGCAGAATTTTT
1 TGACCAGAATACCCTTAGCAGAATTTTT
81197910 TGACCAGAATACCCTTAGCAGAATTTTT
1 TGACCAGAATACCCTTAGCAGAATTTTT
81197938 GTTAGGTAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.32
Consensus pattern (28 bp):
TGACCAGAATACCCTTAGCAGAATTTTT
Found at i:81198127 original size:58 final size:57
Alignment explanation
Indices: 81197968--81198134 Score: 171
Period size: 58 Copynumber: 2.9 Consensus size: 57
81197958 TATTATTATT
* * * * *
81197968 AAATTTTAATA-AGATTATTATTAAAAATAATTTAATAAAAATAATAAATAATTTAATC
1 AAATTTTAACATA-ATTATTACTAAATATAATTTAA-AAAAATAATATATAATTTAATA
* *
81198026 ATATTTTAACATAATTATTACTAAATATAATTTAACAAAATAATATATAATTTAATA
1 AAATTTTAACATAATTATTACTAAATATAATTTAAAAAAATAATATATAATTTAATA
* *
81198083 AAATTCTTAATATAATTATTA-T-TATATGAA-TTAAAAAATCATAATATATAAT
1 AAATT-TTAACATAATTATTACTAAATAT-AATTTAAAAAA--ATAATATATAAT
81198135 ACTATAAAAT
Statistics
Matches: 93, Mismatches: 11, Indels: 10
0.82 0.10 0.09
Matches are distributed among these distances:
56 11 0.12
57 26 0.28
58 55 0.59
59 1 0.01
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.41
Consensus pattern (57 bp):
AAATTTTAACATAATTATTACTAAATATAATTTAAAAAAATAATATATAATTTAATA
Found at i:81205007 original size:20 final size:19
Alignment explanation
Indices: 81204982--81205028 Score: 51
Period size: 18 Copynumber: 2.4 Consensus size: 19
81204972 ATTTTATCAA
*
81204982 AATTAAATCTTGAATTTAAT
1 AATTAAATCCT-AATTTAAT
*
81205002 AATT-AATCCTATTTTAAT
1 AATTAAATCCTAATTTAAT
81205020 AATTCAAAT
1 AATT-AAAT
81205029 TTAATAATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 11 0.48
19 5 0.22
20 7 0.30
ACGTcount: A:0.45, C:0.09, G:0.02, T:0.45
Consensus pattern (19 bp):
AATTAAATCCTAATTTAAT
Found at i:81206545 original size:12 final size:12
Alignment explanation
Indices: 81206515--81206545 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
81206505 TCGTTAAAAC
*
81206515 TCTTGTATTCTT
1 TCTTGTCTTCTT
81206527 TCTTGTCTTCTT
1 TCTTGTCTTCTT
81206539 TCTTGTC
1 TCTTGTC
81206546 CTATTTTTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.03, C:0.23, G:0.10, T:0.65
Consensus pattern (12 bp):
TCTTGTCTTCTT
Found at i:81213805 original size:20 final size:20
Alignment explanation
Indices: 81213780--81213817 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
81213770 AAAGGTTTCG
81213780 TTTAAATAGTATTATGTTAT
1 TTTAAATAGTATTATGTTAT
* *
81213800 TTTAAATATTTTTATGTT
1 TTTAAATAGTATTATGTT
81213818 TACCCTTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.61
Consensus pattern (20 bp):
TTTAAATAGTATTATGTTAT
Found at i:81220202 original size:14 final size:14
Alignment explanation
Indices: 81220183--81220210 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
81220173 TATTTACCTT
81220183 CGATCAATATTATC
1 CGATCAATATTATC
81220197 CGATCAATATTATC
1 CGATCAATATTATC
81220211 TTTATCTTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.21, G:0.07, T:0.36
Consensus pattern (14 bp):
CGATCAATATTATC
Found at i:81220770 original size:23 final size:23
Alignment explanation
Indices: 81220744--81220789 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
81220734 GGGATATTAG
81220744 ATATTGACTAGTTATATACGAAC
1 ATATTGACTAGTTATATACGAAC
81220767 ATATTGACTAGTTATATACGAAC
1 ATATTGACTAGTTATATACGAAC
81220790 TCAAAATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (23 bp):
ATATTGACTAGTTATATACGAAC
Found at i:81223549 original size:73 final size:73
Alignment explanation
Indices: 81223413--81223550 Score: 231
Period size: 73 Copynumber: 1.9 Consensus size: 73
81223403 CCGTACTACC
* * **
81223413 CTCCCACTTCAGGGGTTGATCCACACACCTTCTATCCTTCTTTGTGACTCGACCAATTTCACTAT
1 CTCCCACTTCAGGGGTTAATCCACACACCTTCTATCCTTCTTTGTGACTCAACCAATACCACTAT
81223478 GTGGGATA
66 GTGGGATA
*
81223486 CTCCCACTTCGGGGGTTAATCCACACACCTTCTATCCTTCTTTGTGACTCAACCAATACCACTAT
1 CTCCCACTTCAGGGGTTAATCCACACACCTTCTATCCTTCTTTGTGACTCAACCAATACCACTAT
81223551 TTGAGTCCAA
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
73 60 1.00
ACGTcount: A:0.22, C:0.33, G:0.14, T:0.32
Consensus pattern (73 bp):
CTCCCACTTCAGGGGTTAATCCACACACCTTCTATCCTTCTTTGTGACTCAACCAATACCACTAT
GTGGGATA
Found at i:81224828 original size:6 final size:7
Alignment explanation
Indices: 81224811--81224837 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
81224801 TTTACACCCT
81224811 TTTTTTA
1 TTTTTTA
81224818 TTTTTTA
1 TTTTTTA
81224825 TTTTTTA
1 TTTTTTA
81224832 TTTTTT
1 TTTTTT
81224838 TGCTCGATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (7 bp):
TTTTTTA
Found at i:81230967 original size:19 final size:20
Alignment explanation
Indices: 81230943--81230982 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
81230933 TTTATTTTTA
81230943 TTTTAAATATTTTAAT-ATT
1 TTTTAAATATTTTAATGATT
*
81230962 TTTTAAATTTTTTAATGATT
1 TTTTAAATATTTTAATGATT
81230982 T
1 T
81230983 ATATTATTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 15 0.79
20 4 0.21
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.65
Consensus pattern (20 bp):
TTTTAAATATTTTAATGATT
Found at i:81234219 original size:92 final size:91
Alignment explanation
Indices: 81234027--81234223 Score: 295
Period size: 92 Copynumber: 2.2 Consensus size: 91
81234017 ACTCTTTGTA
* *
81234027 TAAGGGTTGGGAGATGTATGCCTAAAGCAACGCTTAAATAAGAGTTGCCTTTATGTAGTCCTAAG
1 TAAGGGTTGGTATATGTATGCCTAAAGCAACGCTTAAATAAGAGTTGCCTTTATGTAGTCCTAAG
* *
81234092 ACGACACTTTTGTGGTGACATTTTCC
66 ACGACACTTTTGTGGCGACACTTTCC
* * * * *
81234118 TAAGGGTTGGTATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTTTGTGTTGTCCTAA
1 TAAGGGTTGGTATATGTATGCCTAAAGCAACGCTTAAATAAGAGTT-GCCTTTATGTAGTCCTAA
81234183 GACGACACTTTTGTGGCGACACTTTCC
65 GACGACACTTTTGTGGCGACACTTTCC
*
81234210 TAAGTGTTGGTATA
1 TAAGGGTTGGTATA
81234224 GACTATGCTT
Statistics
Matches: 95, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
91 42 0.44
92 53 0.56
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (91 bp):
TAAGGGTTGGTATATGTATGCCTAAAGCAACGCTTAAATAAGAGTTGCCTTTATGTAGTCCTAAG
ACGACACTTTTGTGGCGACACTTTCC
Found at i:81234366 original size:132 final size:132
Alignment explanation
Indices: 81234118--81234487 Score: 641
Period size: 132 Copynumber: 2.8 Consensus size: 132
81234108 GACATTTTCC
* * *
81234118 TAAGGGTTGGTATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTTTGTGTTGTCCTAA
1 TAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTTTGTCTAGTCCTAA
* * *
81234183 GACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGTATAGACTATGCTTTGGCCAACTCTTTG
66 GACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAAACTACGCTTTGGCCAACTCTTTG
81234248 TA
131 TA
*
81234250 TAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTGAATAAGATTTGGCTTTTGTCTAGTCCTAA
1 TAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTTTGTCTAGTCCTAA
*
81234315 GACGACACTTTTGTGGCGACACTTTTCTAAGTGTTGGGATAAACTACGCTTTGGCCAACTCTTTG
66 GACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAAACTACGCTTTGGCCAACTCTTTG
81234380 TA
131 TA
*
81234382 TAAGGGTTGGGATATGTATGCCTAAGACAACGCTTGAATAAGAGTTGGCTTTTGTCTAGTCCTAA
1 TAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTTTGTCTAGTCCTAA
* *
81234447 GACGACAGTTTTGGGGCGACACTTTCCTAAGTGTTGGGATA
66 GACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATA
81234488 CACTTGTCTG
Statistics
Matches: 225, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 225 1.00
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (132 bp):
TAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTTTGTCTAGTCCTAA
GACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAAACTACGCTTTGGCCAACTCTTTG
TA
Found at i:81234778 original size:21 final size:21
Alignment explanation
Indices: 81234731--81234778 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 21
81234721 TTAGTTTAGG
* * *
81234731 GTTTAAGGTTTAGTGCTTAAA
1 GTTTATGGTTTAGGGATTAAA
* *
81234752 GATTATGGTTTAGGGATTATA
1 GTTTATGGTTTAGGGATTAAA
81234773 GTTTAT
1 GTTTAT
81234779 ATAGTTTAAG
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.27, C:0.02, G:0.25, T:0.46
Consensus pattern (21 bp):
GTTTATGGTTTAGGGATTAAA
Found at i:81234846 original size:22 final size:21
Alignment explanation
Indices: 81234821--81234869 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 21
81234811 GGTTTGGGGT
81234821 TTATGATTTTAGGGTTTTATGA
1 TTATGA-TTTAGGGTTTTATGA
* *
81234843 TTATGGATTTGGGGTTTTGTGA
1 TTAT-GATTTAGGGTTTTATGA
81234865 TTATG
1 TTATG
81234870 GGTTTGCGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 1 0.04
22 21 0.88
23 2 0.08
ACGTcount: A:0.18, C:0.00, G:0.29, T:0.53
Consensus pattern (21 bp):
TTATGATTTAGGGTTTTATGA
Found at i:81234870 original size:22 final size:22
Alignment explanation
Indices: 81234832--81234875 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
81234822 TATGATTTTA
81234832 GGGTTTTATGATTATGGATTTG
1 GGGTTTTATGATTATGGATTTG
* *
81234854 GGGTTTTGTGATTATGGGTTTG
1 GGGTTTTATGATTATGGATTTG
81234876 CGATTAATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.14, C:0.00, G:0.36, T:0.50
Consensus pattern (22 bp):
GGGTTTTATGATTATGGATTTG
Found at i:81235002 original size:22 final size:22
Alignment explanation
Indices: 81234967--81235008 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
81234957 TTATGATTAC
*
81234967 GGTTTAGGGTTTTATGGTTTGT
1 GGTTTAGGGTTTTAAGGTTTGT
81234989 GGTTTAGGAG-TTTAAGGTTT
1 GGTTTAGG-GTTTTAAGGTTT
81235009 ATTATTTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 17 0.94
23 1 0.06
ACGTcount: A:0.14, C:0.00, G:0.36, T:0.50
Consensus pattern (22 bp):
GGTTTAGGGTTTTAAGGTTTGT
Found at i:81235061 original size:14 final size:14
Alignment explanation
Indices: 81235042--81235095 Score: 65
Period size: 14 Copynumber: 3.9 Consensus size: 14
81235032 ATGGTCTTGA
81235042 GGTTTAGGGTTTGT
1 GGTTTAGGGTTTGT
* * *
81235056 GGTTTAAGGCTTAT
1 GGTTTAGGGTTTGT
81235070 GGTTTAGGGTTTAG-
1 GGTTTAGGGTTT-GT
81235084 GGTTTAGGGTTT
1 GGTTTAGGGTTT
81235096 TGATAAAAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
14 33 1.00
ACGTcount: A:0.13, C:0.02, G:0.39, T:0.46
Consensus pattern (14 bp):
GGTTTAGGGTTTGT
Found at i:81235094 original size:21 final size:21
Alignment explanation
Indices: 81235014--81235095 Score: 67
Period size: 21 Copynumber: 3.8 Consensus size: 21
81235004 GGTTTATTAT
** *
81235014 TTTAAGGTTTAAGATTTTATGG
1 TTTAAGGTTT-AGGGTTTGTGG
*
81235036 TCTTGAGGTTTAGGGTTTGTGG
1 T-TTAAGGTTTAGGGTTTGTGG
* *
81235058 TTTAAGGCTTATGGTTTAG-GG
1 TTTAAGGTTTAGGGTTT-GTGG
*
81235079 TTTAGGGTTTAGGGTTT
1 TTTAAGGTTTAGGGTTT
81235096 TGATAAAAAT
Statistics
Matches: 48, Mismatches: 10, Indels: 5
0.76 0.16 0.08
Matches are distributed among these distances:
21 29 0.60
22 11 0.23
23 8 0.17
ACGTcount: A:0.17, C:0.02, G:0.33, T:0.48
Consensus pattern (21 bp):
TTTAAGGTTTAGGGTTTGTGG
Found at i:81235571 original size:47 final size:47
Alignment explanation
Indices: 81235502--81235667 Score: 296
Period size: 47 Copynumber: 3.5 Consensus size: 47
81235492 TAAGAATGTG
*
81235502 TGCATACTTTACCCGGATAAAGTATGTATTAGCAGATTCACTAATTA
1 TGCATACTTTACCCGGATAAAGTATGTATTAGCAGATTCACTAATAA
81235549 TGCATACTTTACCCGGATAAAGTATGTATTAGCAGATTCACTAATAA
1 TGCATACTTTACCCGGATAAAGTATGTATTAGCAGATTCACTAATAA
* *
81235596 TGCATATTTTACTCGGATAAAGTATGTATTAGCAGATTCACTAATAA
1 TGCATACTTTACCCGGATAAAGTATGTATTAGCAGATTCACTAATAA
*
81235643 TGCATACTTTACCCGGGTAAAGTAT
1 TGCATACTTTACCCGGATAAAGTAT
81235668 ACATTATTTA
Statistics
Matches: 113, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 113 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (47 bp):
TGCATACTTTACCCGGATAAAGTATGTATTAGCAGATTCACTAATAA
Found at i:81238628 original size:36 final size:36
Alignment explanation
Indices: 81238567--81238955 Score: 164
Period size: 37 Copynumber: 10.6 Consensus size: 36
81238557 ATTATACGTG
* * *
81238567 TCTATCCCAATCTTTTTTTATAGGTTGTTTTAAATAATA
1 TCTATCCCAA-CCTTTTTTA-AGGTTGCTTTAAA-AAGA
* *
81238606 TCTATCCCAA-CTTTTTTAAGGTTGCTTTAAACAGG
1 TCTATCCCAACCTTTTTTAAGGTTGCTTTAAAAAGA
* * * * * *
81238641 TCTATCCCAACCTTTTTTAAAAGTTACCTTAGACATGG
1 TCTATCCCAACCTTTTTT-AAGGTTGCTTTA-AAAAGA
* * *
81238679 TCTATCCCAACC-TTTTTAAGGTTGCCTT-AGACGA
1 TCTATCCCAACCTTTTTTAAGGTTGCTTTAAAAAGA
* * * * * *
81238713 GTCTATTCCGACCTTTTTTAAAGGTTGCCTTAGACAGG
1 -TCTATCCCAACCTTTTTT-AAGGTTGCTTTAAAAAGA
* *
81238751 TCTATCCCAACCTTTTTTTATAGGTTGTTTTAGACAATG-
1 TCTATCCCAACC-TTTTTTA-AGGTTGCTTTA-A-AAAGA
* * ** *
81238790 TCGATCCCAACC-TTTTTAAGGTTGCTTTAGACGGC
1 TCTATCCCAACCTTTTTTAAGGTTGCTTTAAAAAGA
* * *
81238825 TCTATCCCAA-CTATTTTTAAAAGTTGCCTTAAGCAAGA
1 TCTATCCCAACCT-TTTTT-AAGGTTGCTTTAA-AAAGA
* ** * * * *
81238863 ACTATATCGACC-TTTTTAAGGTTG-TCTTAGATAGG
1 TCTATCCCAACCTTTTTTAAGGTTGCT-TTAAAAAGA
* * * * ** *
81238898 TTTATCACAACCTTTTTCAAAGGTTGGTCTTAACTAGG
1 TCTATCCCAACCTTTTT-TAAGGTTGCT-TTAAAAAGA
*
81238936 TCTATCCCAACCCTTTTTAA
1 TCTATCCCAACCTTTTTTAA
81238956 AGGTCGGCAT
Statistics
Matches: 264, Mismatches: 65, Indels: 44
0.71 0.17 0.12
Matches are distributed among these distances:
34 6 0.02
35 39 0.15
36 61 0.23
37 73 0.28
38 61 0.23
39 22 0.08
40 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.14, T:0.40
Consensus pattern (36 bp):
TCTATCCCAACCTTTTTTAAGGTTGCTTTAAAAAGA
Found at i:81238689 original size:73 final size:72
Alignment explanation
Indices: 81238606--81238959 Score: 292
Period size: 73 Copynumber: 4.8 Consensus size: 72
81238596 TTAAATAATA
* * *
81238606 TCTATCCCAACTTTTTTAAGGTTGCTTTAAACAGGTCTATCCCAACCTTTTTTAAAAGTTACCTT
1 TCTATCCCAACTTTTTTAAGGTTGCTTTAGACAGGTCTATCCCAACCTTTTTTAAAGGTTGCCTT
81238671 AGACATGG
66 AGACA-GG
* * * *
81238679 TCTATCCCAACCTTTTTAAGGTTGCCTTAGAC-GAGTCTATTCCGACCTTTTTTAAAGGTTGCCT
1 TCTATCCCAACTTTTTTAAGGTTGCTTTAGACAG-GTCTATCCCAACCTTTTTTAAAGGTTGCCT
81238743 TAGACAGG
65 TAGACAGG
* * *
81238751 TCTATCCCAACCTTTTTTTATAGGTTGTTTTAGACAATGTCGATCCCAACC-TTTTT-AAGGTTG
1 TCTATCCCAA-C-TTTTTTA-AGGTTGCTTTAGAC-AGGTCTATCCCAACCTTTTTTAAAGGTTG
*
81238814 CTTTAGAC-GG
62 CCTTAGACAGG
* * ** ** *
81238824 CTCTATCCCAACTATTTTTAAAAGTTGCCTTA-AGCAAGAACTATATCGACC-TTTTT-AAGGTT
1 -TCTATCCCAACT-TTTTT-AAGGTTGCTTTAGA-C-AGGTCTATCCCAACCTTTTTTAAAGGTT
* *
81238886 GTCTTAGATAGG
61 GCCTTAGACAGG
* * * * *
81238898 TTTATCACAACCTTTTTCAAAGGTTGGTCTTA-ACTAGGTCTATCCCAACCCTTTTTAAAGGT
1 TCTATCCCAA-CTTTTT-TAAGGTTGCT-TTAGAC-AGGTCTATCCCAACCTTTTTTAAAGGT
81238960 CGGCATTGAC
Statistics
Matches: 225, Mismatches: 40, Indels: 30
0.76 0.14 0.10
Matches are distributed among these distances:
72 15 0.07
73 134 0.60
74 44 0.20
75 22 0.10
76 10 0.04
ACGTcount: A:0.25, C:0.21, G:0.15, T:0.38
Consensus pattern (72 bp):
TCTATCCCAACTTTTTTAAGGTTGCTTTAGACAGGTCTATCCCAACCTTTTTTAAAGGTTGCCTT
AGACAGG
Found at i:81238814 original size:111 final size:109
Alignment explanation
Indices: 81238606--81238856 Score: 328
Period size: 111 Copynumber: 2.3 Consensus size: 109
81238596 TTAAATAATA
*
81238606 TCTATCCCAACTTTTTT-AAGGTTGCTTTAAACAGGTCTATCCCAACCTTTTTTAAAAGTTACCT
1 TCTATCCCAACTTTTTTAAAGGTTGCCTTAAACAGGTCTATCCCAACCTTTTTTAAAAGTTACCT
*
81238670 TAGACATGGTCTATCCCAACCTTTTTAAGGTTGCCTTAGACGAG-
66 TAGACATGGTCGATCCCAACCTTTTTAAGGTTGCCTTAGACG-GC
* * * * * **
81238714 TCTATTCCGACCTTTTTTAAAGGTTGCCTTAGACAGGTCTATCCCAACCTTTTTTTATAGGTTGT
1 TCTA-TCCCAACTTTTTTAAAGGTTGCCTTAAACAGGTCTATCCCAACC-TTTTTTAAAAGTTAC
* *
81238779 TTTAGACAAT-GTCGATCCCAACCTTTTTAAGGTTGCTTTAGACGGC
64 CTTAGAC-ATGGTCGATCCCAACCTTTTTAAGGTTGCCTTAGACGGC
*
81238825 TCTATCCCAACTATTTTTAAAAGTTGCCTTAA
1 TCTATCCCAACT-TTTTTAAAGGTTGCCTTAA
81238857 GCAAGAACTA
Statistics
Matches: 122, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
108 4 0.03
109 11 0.09
110 35 0.29
111 70 0.57
112 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (109 bp):
TCTATCCCAACTTTTTTAAAGGTTGCCTTAAACAGGTCTATCCCAACCTTTTTTAAAAGTTACCT
TAGACATGGTCGATCCCAACCTTTTTAAGGTTGCCTTAGACGGC
Found at i:81238878 original size:184 final size:185
Alignment explanation
Indices: 81238566--81238953 Score: 484
Period size: 184 Copynumber: 2.1 Consensus size: 185
81238556 TATTATACGT
* * * *
81238566 GTCTATCCCAATCTTTTTTTATAGGTTGTTTTAAATAATATCTATCCCAACTTTTTTAAGGTTGC
1 GTCTATCCCAACCTTTTTTTATAGGTTGTTTTAAACAATATCGATCCCAACCTTTTTAAGGTTGC
* ** *
81238631 TTTAAACAGGTCTATCCCAACCTTTTTTAAAAGTTACCTTAGACATGGTCTATCCCAACCTTTTT
66 TTTAAACAGGTCTATCCCAACCTTTTTTAAAAGTTACCTTAGACAAGAACTATACCAACCTTTTT
* *
81238696 AAGGTTGCCTTAGACGA-GTCTATTC-CGACCTTTTTTAAAGGTT-GCCTTAGAC-AG
131 AAGGTTGCCTTAGA-GAGGTCTA-TCACAACCTTTTTCAAAGGTTGGCCTTA-ACTAG
* *
81238750 GTCTATCCCAACCTTTTTTTATAGGTTGTTTTAGACAATGTCGATCCCAACCTTTTTAAGGTTGC
1 GTCTATCCCAACCTTTTTTTATAGGTTGTTTTAAACAATATCGATCCCAACCTTTTTAAGGTTGC
* * * *
81238815 TTTAGAC-GGCTCTATCCCAA-CTATTTTTAAAAGTTGCCTTA-AGCAAGAACTATATCGACCTT
66 TTTAAACAGG-TCTATCCCAACCT-TTTTTAAAAGTTACCTTAGA-CAAGAACTATACCAACCTT
* * * *
81238877 TTTAAGGTTGTCTTAGATAGGTTTATCACAACCTTTTTCAAAGGTTGGTCTTAACTAG
128 TTTAAGGTTGCCTTAGAGAGGTCTATCACAACCTTTTTCAAAGGTTGGCCTTAACTAG
*
81238935 GTCTATCCCAACCCTTTTT
1 GTCTATCCCAACCTTTTTT
81238954 AAAGGTCGGC
Statistics
Matches: 176, Mismatches: 21, Indels: 13
0.84 0.10 0.06
Matches are distributed among these distances:
183 8 0.05
184 143 0.81
185 25 0.14
ACGTcount: A:0.25, C:0.21, G:0.14, T:0.40
Consensus pattern (185 bp):
GTCTATCCCAACCTTTTTTTATAGGTTGTTTTAAACAATATCGATCCCAACCTTTTTAAGGTTGC
TTTAAACAGGTCTATCCCAACCTTTTTTAAAAGTTACCTTAGACAAGAACTATACCAACCTTTTT
AAGGTTGCCTTAGAGAGGTCTATCACAACCTTTTTCAAAGGTTGGCCTTAACTAG
Found at i:81238879 original size:111 final size:109
Alignment explanation
Indices: 81238606--81238893 Score: 275
Period size: 111 Copynumber: 2.6 Consensus size: 109
81238596 TTAAATAATA
* * * ** * * **
81238606 TCTA-TCCCAACTTTTTT-AAGGTTGCTTTAAACAGGTCTATCCCAACCTTTTTTAAAAGTTACC
1 TCTATTCCCAACTTTTTTAAAAGTTGCCTTAGACAGAACTATACCAACCTTTTTT-AAGGTTGTC
*
81238669 TTAGACATGGTCTATCCCAACCTTTTTAAGGTTGCCTTAGACGAG
65 TTAGACATGGTCGATCCCAACCTTTTTAAGGTTGCCTTAGACGAG
* * * ** *
81238714 TCTATTCCGACCTTTTTTAAAGGTTGCCTTAGACAGGTCTATCCCAACCTTTTTTTATAGGTTGT
1 TCTATTCCCAACTTTTTTAAAAGTTGCCTTAGACAGAACTATACCAACC-TTTTTTA-AGGTTGT
* *
81238779 TTTAGACAAT-GTCGATCCCAACCTTTTTAAGGTTGCTTTAGACG-G
64 CTTAGAC-ATGGTCGATCCCAACCTTTTTAAGGTTGCCTTAGACGAG
* *
81238824 CTCTA-TCCCAACTATTTTTAAAAGTTGCCTTA-AGCAAGAACTATATCGACC-TTTTTAAGGTT
1 -TCTATTCCCAACT-TTTTTAAAAGTTGCCTTAGA-C-AGAACTATACCAACCTTTTTTAAGGTT
81238886 GTCTTAGA
62 GTCTTAGA
81238894 TAGGTTTATC
Statistics
Matches: 152, Mismatches: 19, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
108 4 0.03
109 23 0.15
110 43 0.28
111 70 0.46
112 12 0.08
ACGTcount: A:0.25, C:0.22, G:0.15, T:0.38
Consensus pattern (109 bp):
TCTATTCCCAACTTTTTTAAAAGTTGCCTTAGACAGAACTATACCAACCTTTTTTAAGGTTGTCT
TAGACATGGTCGATCCCAACCTTTTTAAGGTTGCCTTAGACGAG
Found at i:81238936 original size:38 final size:36
Alignment explanation
Indices: 81238606--81238959 Score: 165
Period size: 37 Copynumber: 9.6 Consensus size: 36
81238596 TTAAATAATA
* * * *
81238606 TCTATCCCAA-CTTTTTTAAGGTTG-CTTTAAACAGG
1 TCTATCACAACCTTTTTAAAGGTTGTC-TTAGATAGG
* * ** *
81238641 TCTATCCCAACCTTTTTTAAAAGTTACCTTAGACATGG
1 TCTATCACAACC-TTTTTAAAGGTTGTCTTAGATA-GG
* * *
81238679 TCTATCCCAACCTTTTT-AAGGTTGCCTTAGA-CGAG
1 TCTATCACAACCTTTTTAAAGGTTGTCTTAGATAG-G
* * *
81238714 TCTATTC-CGACCTTTTTTAAAGGTTGCCTTAGACAGG
1 TCTA-TCACAACC-TTTTTAAAGGTTGTCTTAGATAGG
* * * * *
81238751 TCTATCCCAACCTTTTTTTATAGGTTGTTTTAGACAATG
1 TCTATCACAACC--TTTTTAAAGGTTGTCTTAGA-TAGG
* * *
81238790 TCGATCCCAACCTTTTT-AAGGTTG-CTTTAGA-CGG
1 TCTATCACAACCTTTTTAAAGGTTGTC-TTAGATAGG
* * * * *
81238824 CTCTATCCCAACTATTTTTAAAAGTTGCCTTAAGCA-AGA
1 -TCTATCACAAC-CTTTTTAAAGGTTGTCTT-AG-ATAGG
* *
81238863 ACTAT-ATCGACCTTTTT-AAGGTTGTCTTAGATAGG
1 TCTATCA-CAACCTTTTTAAAGGTTGTCTTAGATAGG
*
81238898 TTTATCACAACCTTTTTCAAAGGTTGGTCTTA-ACTAGG
1 TCTATCACAACCTTTTT-AAAGGTT-GTCTTAGA-TAGG
*
81238936 TCTATCCCAACCCTTTTTAAAGGT
1 TCTATCACAA-CCTTTTTAAAGGT
81238960 CGGCATTGAC
Statistics
Matches: 255, Mismatches: 37, Indels: 51
0.74 0.11 0.15
Matches are distributed among these distances:
34 3 0.01
35 45 0.18
36 48 0.19
37 69 0.27
38 68 0.27
39 22 0.09
ACGTcount: A:0.25, C:0.21, G:0.15, T:0.38
Consensus pattern (36 bp):
TCTATCACAACCTTTTTAAAGGTTGTCTTAGATAGG
Found at i:81240298 original size:21 final size:21
Alignment explanation
Indices: 81240265--81240309 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
81240255 AAAGATGTGT
*
81240265 ATTGGATTGAATTGA-GTATAA
1 ATTGGATTAAATTGATGT-TAA
*
81240286 ATTGTATTAAATTGATGTTAA
1 ATTGGATTAAATTGATGTTAA
81240307 ATT
1 ATT
81240310 CATTCATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 19 0.90
22 2 0.10
ACGTcount: A:0.38, C:0.00, G:0.18, T:0.44
Consensus pattern (21 bp):
ATTGGATTAAATTGATGTTAA
Found at i:81240664 original size:25 final size:25
Alignment explanation
Indices: 81240622--81240688 Score: 64
Period size: 25 Copynumber: 2.7 Consensus size: 25
81240612 CGAAAGTGCA
* * *
81240622 TCCCGATATTTGGCTCTTATGAGCG
1 TCCCGTTATATGGCTCTTATAAGCG
* * *
81240647 TCCCGTTATATGGTTCTTGTAAGCT
1 TCCCGTTATATGGCTCTTATAAGCG
*
81240672 TCCCGTTA-ATAGCTCTT
1 TCCCGTTATATGGCTCTT
81240689 TGGAGCATCC
Statistics
Matches: 34, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
24 7 0.21
25 27 0.79
ACGTcount: A:0.16, C:0.24, G:0.19, T:0.40
Consensus pattern (25 bp):
TCCCGTTATATGGCTCTTATAAGCG
Found at i:81242300 original size:11 final size:11
Alignment explanation
Indices: 81242284--81242310 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
81242274 AAGGGACAAC
81242284 ATGATTGATTT
1 ATGATTGATTT
81242295 ATGATTGATTT
1 ATGATTGATTT
81242306 ATGAT
1 ATGAT
81242311 ATGAATGAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.30, C:0.00, G:0.19, T:0.52
Consensus pattern (11 bp):
ATGATTGATTT
Found at i:81243273 original size:17 final size:17
Alignment explanation
Indices: 81243251--81243284 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
81243241 CAGGGGAAAG
*
81243251 AAAGAAGGAAAGAAAAA
1 AAAGAAAGAAAGAAAAA
*
81243268 AAAGAAAGAAGGAAAAA
1 AAAGAAAGAAAGAAAAA
81243285 GGAAAAAATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (17 bp):
AAAGAAAGAAAGAAAAA
Found at i:81245214 original size:14 final size:14
Alignment explanation
Indices: 81245195--81245222 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
81245185 TAGGGTCTGA
81245195 ATTTAGCCTGGACT
1 ATTTAGCCTGGACT
81245209 ATTTAGCCTGGACT
1 ATTTAGCCTGGACT
81245223 GGTAATTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.36
Consensus pattern (14 bp):
ATTTAGCCTGGACT
Found at i:81245429 original size:46 final size:46
Alignment explanation
Indices: 81245377--81245656 Score: 366
Period size: 46 Copynumber: 6.0 Consensus size: 46
81245367 GAGTGTGCTC
81245377 TCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAA
1 TCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAA
81245423 TCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAA
1 TCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAA
* *
81245469 CCTGATATGAAATGTGTAAGACCATAGTTGAAAGATACCATGGCAA
1 TCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAA
* *
81245515 TGTGATATGAAATGTGTAAGACCATGGTTGAAAGATACTATGGCAA
1 TCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAA
* * * * * *
81245561 CGTGACAGAAAAT-AAATGAGTAAGACCATAGTTGAAAGACACTATGGCAA
1 --T--CTG-ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAA
* * **
81245611 -CGTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAA
1 TC-TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAA
81245657 CATGACAGAA
Statistics
Matches: 208, Mismatches: 19, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
45 4 0.02
46 165 0.79
48 1 0.00
50 35 0.17
51 3 0.01
ACGTcount: A:0.40, C:0.13, G:0.24, T:0.23
Consensus pattern (46 bp):
TCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAA
Found at i:81245632 original size:96 final size:95
Alignment explanation
Indices: 81245386--81245704 Score: 407
Period size: 96 Copynumber: 3.4 Consensus size: 95
81245376 CTCTGATATG
* * *
81245386 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAATC-TGATATGAAATGTGTAAGACCATGG
1 AAATGAGTAAGACCATAGTTGAAAGACACCATGGCAA-CGTGATATGAAATGTGTAAGACCATGG
* *
81245450 TTGAAAGATACCATGGCAAC---CTG-ATAT
65 TTGAAAGATACCATGGCAACTGACAGAAAAT
* * *
81245477 GAAATGTGTAAGACCATAGTTGAAAGATACCATGGCAATGTGATATGAAATGTGTAAGACCATGG
1 -AAATGAGTAAGACCATAGTTGAAAGACACCATGGCAACGTGATATGAAATGTGTAAGACCATGG
*
81245542 TTGAAAGATACTATGGCAACGTGACAGAAAAT
65 TTGAAAGATACCATGGCAAC-TGACAGAAAAT
* * * **
81245574 AAATGAGTAAGACCATAGTTGAAAGACACTATGGCAACGTGACATGAAAAGAATAAGACCATGGT
1 AAATGAGTAAGACCATAGTTGAAAGACACCATGGCAACGTGATATGAAATGTGTAAGACCATGGT
81245639 TGAAAGATACCATGGCAACATGACAGAAAAT
66 TGAAAGATACCATGGCAAC-TGACAGAAAAT
* * *
81245670 GAATGAGTAAGACTATAGTTG-AAGACACTATGGCA
1 AAATGAGTAAGACCATAGTTGAAAGACACCATGGCA
81245705 TCATGTCAAA
Statistics
Matches: 204, Mismatches: 17, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
92 80 0.39
95 14 0.07
96 107 0.52
97 3 0.01
ACGTcount: A:0.41, C:0.13, G:0.24, T:0.22
Consensus pattern (95 bp):
AAATGAGTAAGACCATAGTTGAAAGACACCATGGCAACGTGATATGAAATGTGTAAGACCATGGT
TGAAAGATACCATGGCAACTGACAGAAAAT
Found at i:81247680 original size:42 final size:42
Alignment explanation
Indices: 81247634--81247747 Score: 113
Period size: 43 Copynumber: 2.7 Consensus size: 42
81247624 TTTAATCTTG
* *
81247634 AAAAAAGTCCTAAAGAATATTTACATATTAATTTAAGATTCTA
1 AAAAAAGTCCTAAAGAATATTTA-AAATTAATTTAAAATTCTA
* * *
81247677 AAAAAGATTCCTATACG-ATATTTAAAATTAGTTTAAAATTCTA
1 AAAAA-AGTCCTA-AAGAATATTTAAAATTAATTTAAAATTCTA
* * * *
81247720 AAAAAAATCCTACATAATATTTATAATT
1 AAAAAAGTCCTAAAGAATATTTAAAATT
81247748 TTTCTAGGGT
Statistics
Matches: 58, Mismatches: 10, Indels: 7
0.77 0.13 0.09
Matches are distributed among these distances:
42 17 0.29
43 26 0.45
44 13 0.22
45 2 0.03
ACGTcount: A:0.49, C:0.10, G:0.05, T:0.36
Consensus pattern (42 bp):
AAAAAAGTCCTAAAGAATATTTAAAATTAATTTAAAATTCTA
Found at i:81248639 original size:41 final size:41
Alignment explanation
Indices: 81248582--81248665 Score: 132
Period size: 41 Copynumber: 2.0 Consensus size: 41
81248572 TAGTAGTAGT
**
81248582 AATGATAATAATAATTTGGACCATTGACAGACCCAAAAAGA
1 AATGATAATAATAATTTAAACCATTGACAGACCCAAAAAGA
* *
81248623 AATGATAATAATAATTTAAACCATTGACGGACTCAAAAAGA
1 AATGATAATAATAATTTAAACCATTGACAGACCCAAAAAGA
81248664 AA
1 AA
81248666 AGAAAATTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.51, C:0.13, G:0.13, T:0.23
Consensus pattern (41 bp):
AATGATAATAATAATTTAAACCATTGACAGACCCAAAAAGA
Found at i:81249316 original size:11 final size:11
Alignment explanation
Indices: 81249300--81249342 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
81249290 GTATATTTAC
*
81249300 ATTAATATGGT
1 ATTAATATTGT
*
81249311 ATTAATACTTTT
1 ATTAATA-TTGT
81249323 CATTAATATTGT
1 -ATTAATATTGT
81249335 ATTAATAT
1 ATTAATAT
81249343 CTCTATATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
11 15 0.56
12 5 0.19
13 7 0.26
ACGTcount: A:0.37, C:0.05, G:0.07, T:0.51
Consensus pattern (11 bp):
ATTAATATTGT
Found at i:81252104 original size:14 final size:13
Alignment explanation
Indices: 81252071--81252118 Score: 55
Period size: 14 Copynumber: 3.7 Consensus size: 13
81252061 TTACCTGCAG
*
81252071 TTTTATT-TTTTA
1 TTTTATTATTATA
81252083 TTTT-TTATTATA
1 TTTTATTATTATA
81252095 GTTTTATTATTATA
1 -TTTTATTATTATA
81252109 TTTTGATTAT
1 TTTT-ATTAT
81252119 ATTTTTTTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
11 2 0.06
12 8 0.26
13 8 0.26
14 13 0.42
ACGTcount: A:0.23, C:0.00, G:0.04, T:0.73
Consensus pattern (13 bp):
TTTTATTATTATA
Found at i:81252117 original size:25 final size:26
Alignment explanation
Indices: 81252069--81252128 Score: 72
Period size: 25 Copynumber: 2.4 Consensus size: 26
81252059 ATTTACCTGC
* *
81252069 AGTTTTATT-TTTTATTTTTTATTAT
1 AGTTTTATTATTATATTTTTGATTAT
81252094 AGTTTTATTATTATA-TTTTGATTAT
1 AGTTTTATTATTATATTTTTGATTAT
*
81252119 A-TTTTTTTAT
1 AGTTTTATTAT
81252129 ACAATACTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 8 0.26
25 19 0.61
26 4 0.13
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.72
Consensus pattern (26 bp):
AGTTTTATTATTATATTTTTGATTAT
Done.