Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 253 of 255
Found at i:81895125 original size:21 final size:22
Alignment explanation
Indices: 81895099--81895145 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
81895089 CTCTGCTCAA
*
81895099 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
81895120 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
81895142 ACTC
1 ACTC
81895146 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:81901977 original size:32 final size:32
Alignment explanation
Indices: 81901940--81902009 Score: 77
Period size: 32 Copynumber: 2.2 Consensus size: 32
81901930 CATTGTACTC
* *
81901940 AAAATTAGTTAATTTTAATTCTTATATTTTTT
1 AAAATTAGTCAATTTTAATTCATATATTTTTT
* * * * *
81901972 CAAATTGGTCGATTTTAGTTCATGTATTTTTT
1 AAAATTAGTCAATTTTAATTCATATATTTTTT
81902004 AAAATT
1 AAAATT
81902010 TGAAATTTTA
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.31, C:0.06, G:0.09, T:0.54
Consensus pattern (32 bp):
AAAATTAGTCAATTTTAATTCATATATTTTTT
Found at i:81902411 original size:9 final size:10
Alignment explanation
Indices: 81902399--81902443 Score: 58
Period size: 10 Copynumber: 4.7 Consensus size: 10
81902389 AAAAAGGGAA
81902399 AATAA-AAAT
1 AATAATAAAT
81902408 AATAAT-AAT
1 AATAATAAAT
*
81902417 AATAATAATT
1 AATAATAAAT
*
81902427 AATAATTAAT
1 AATAATAAAT
81902437 AATAATA
1 AATAATA
81902444 GTAATAGTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
9 14 0.47
10 16 0.53
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (10 bp):
AATAATAAAT
Found at i:81902413 original size:3 final size:3
Alignment explanation
Indices: 81902399--81902456 Score: 71
Period size: 3 Copynumber: 18.7 Consensus size: 3
81902389 AAAAAGGGAA
* *
81902399 AAT AAA AAT AAT AAT AAT AAT AAT AATT AAT AATT AAT AAT AAT AGT
1 AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AA-T AAT AAT AAT AAT
*
81902446 AAT AGT AAT AA
1 AAT AAT AAT AA
81902457 GTTTAATATT
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
3 41 0.87
4 6 0.13
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:81903677 original size:87 final size:90
Alignment explanation
Indices: 81903586--81903760 Score: 232
Period size: 87 Copynumber: 2.0 Consensus size: 90
81903576 TTGGTAATTG
* **
81903586 AACTTCACACTTTTTCTTAATTTGGTA-TCTAAA-TTTTT-TTGTCCAATTTGATACCCAAACTT
1 AACTTCACACTTTTTCTTAAATTGGTACT-TAAACTTTTTAGAGTCCAATTTGATACCCAAACTT
81903648 GACAC-TTTTCTTAATTTGGTACCTA
65 GACACTTTTTCTTAATTTGGTACCTA
* * * *
81903673 AACTTTACATTTTTTCTTAAATTGGTACTTAAACTTTTTGAGAGTCCAATTTGGTACCTAAACTT
1 AACTTCACACTTTTTCTTAAATTGGTACTTAAACTTTTT-AGAGTCCAATTTGATACCCAAACTT
*
81903738 GACTCTTTTTCTTAATTTGGTAC
65 GACACTTTTTCTTAATTTGGTAC
81903761 ATAATTTTTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
87 28 0.37
88 6 0.08
90 24 0.32
91 17 0.23
ACGTcount: A:0.26, C:0.18, G:0.10, T:0.46
Consensus pattern (90 bp):
AACTTCACACTTTTTCTTAAATTGGTACTTAAACTTTTTAGAGTCCAATTTGATACCCAAACTTG
ACACTTTTTCTTAATTTGGTACCTA
Found at i:81903691 original size:31 final size:31
Alignment explanation
Indices: 81903586--81903709 Score: 107
Period size: 31 Copynumber: 4.2 Consensus size: 31
81903576 TTGGTAATTG
* * *
81903586 AACTTCACACTTTTTCTTAATTTGGTATCTA
1 AACTTTACATTTTTTCTTAATTTGGTACCTA
* * * *
81903617 AA-TTT---TTTTGTC-CAATTTGATACCCA
1 AACTTTACATTTTTTCTTAATTTGGTACCTA
* *
81903643 AACTTGACA-CTTTTCTTAATTTGGTACCTA
1 AACTTTACATTTTTTCTTAATTTGGTACCTA
* *
81903673 AACTTTACATTTTTTCTTAAATTGGTACTTA
1 AACTTTACATTTTTTCTTAATTTGGTACCTA
81903704 AACTTT
1 AACTTT
81903710 TTGAGAGTCC
Statistics
Matches: 70, Mismatches: 17, Indels: 12
0.71 0.17 0.12
Matches are distributed among these distances:
26 12 0.17
27 7 0.10
29 4 0.06
30 21 0.30
31 26 0.37
ACGTcount: A:0.27, C:0.18, G:0.07, T:0.48
Consensus pattern (31 bp):
AACTTTACATTTTTTCTTAATTTGGTACCTA
Found at i:81903758 original size:31 final size:30
Alignment explanation
Indices: 81903586--81903760 Score: 96
Period size: 31 Copynumber: 5.9 Consensus size: 30
81903576 TTGGTAATTG
* *
81903586 AACTTCACACTTTTTCTTAATTTGGTATCTA
1 AACTT-ACTCTTTTTCTTAATTTGGTACCTA
* * *
81903617 AA-TT--T-TTTTGTC-CAATTTGATACCCA
1 AACTTACTCTTTT-TCTTAATTTGGTACCTA
*
81903643 AACTTGACAC-TTTTCTTAATTTGGTACCTA
1 AACTT-ACTCTTTTTCTTAATTTGGTACCTA
* *
81903673 AACTTTACAT-TTTTTCTTAAATTGGTACTTA
1 AAC-TTAC-TCTTTTTCTTAATTTGGTACCTA
** ***** *
81903704 AACTTTTTGAGAGTC-CAATTTGGTACCTA
1 AACTTACTCTTTTTCTTAATTTGGTACCTA
81903733 AACTTGACTCTTTTTCTTAATTTGGTAC
1 AACTT-ACTCTTTTTCTTAATTTGGTAC
81903761 ATAATTTTTT
Statistics
Matches: 102, Mismatches: 29, Indels: 26
0.65 0.18 0.17
Matches are distributed among these distances:
26 16 0.16
27 4 0.04
29 19 0.19
30 28 0.27
31 35 0.34
ACGTcount: A:0.26, C:0.18, G:0.10, T:0.46
Consensus pattern (30 bp):
AACTTACTCTTTTTCTTAATTTGGTACCTA
Found at i:81906197 original size:48 final size:47
Alignment explanation
Indices: 81906107--81906197 Score: 121
Period size: 47 Copynumber: 1.9 Consensus size: 47
81906097 ATGAAAAATC
* * **
81906107 AAAATATATAAAAATACATAATTTTTTTAAAACGTAATAATAAATTT
1 AAAATATATAAAAATAAATAATTTTTTAAAAAAATAATAATAAATTT
81906154 AAAATATATAAAAATAAATACATATTTTTAAAAAAAT-ATAATAA
1 AAAATATATAAAAATAAATA-AT-TTTTTAAAAAAATAATAATAA
81906198 CAAATTTCAT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
47 19 0.50
48 9 0.24
49 10 0.26
ACGTcount: A:0.60, C:0.03, G:0.01, T:0.35
Consensus pattern (47 bp):
AAAATATATAAAAATAAATAATTTTTTAAAAAAATAATAATAAATTT
Found at i:81906248 original size:11 final size:11
Alignment explanation
Indices: 81906232--81906257 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
81906222 AAATTATCTC
81906232 ACCTTCCTAAG
1 ACCTTCCTAAG
81906243 ACCTTCCTAAG
1 ACCTTCCTAAG
81906254 ACCT
1 ACCT
81906258 ATGCCTTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.38, G:0.08, T:0.27
Consensus pattern (11 bp):
ACCTTCCTAAG
Found at i:81910139 original size:5 final size:5
Alignment explanation
Indices: 81910122--81910154 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
81910112 CTTTTTAGGC
*
81910122 ATAAA ATAGA ATAAA ATAAA ATAAA ATAAA ATA
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATA
81910155 TTTTATGTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (5 bp):
ATAAA
Found at i:81910480 original size:22 final size:22
Alignment explanation
Indices: 81910415--81910482 Score: 68
Period size: 22 Copynumber: 3.1 Consensus size: 22
81910405 AAATTAATAA
* *
81910415 ATAAAATATTAAATTT-TATTTT
1 ATAAAAT-TAAAATTTATAATTT
* *
81910437 AT-AAATTGATATTTATATATTT
1 ATAAAATTAAAATTTATA-ATTT
81910459 ATAAAATTAAAATTTATAATTT
1 ATAAAATTAAAATTTATAATTT
81910481 AT
1 AT
81910483 TGTAATGGAA
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
20 6 0.16
21 6 0.16
22 13 0.34
23 13 0.34
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.51
Consensus pattern (22 bp):
ATAAAATTAAAATTTATAATTT
Found at i:81912601 original size:39 final size:39
Alignment explanation
Indices: 81912520--81912605 Score: 102
Period size: 39 Copynumber: 2.2 Consensus size: 39
81912510 AGGAAATTAC
* * *
81912520 ATTTTTTTATTTTTATAATTTTTAAAAGTTTAAATTAAA
1 ATTTTATTATTTTTATAATTTTTAAAAGATTAAAGTAAA
* **
81912559 ATTTTATTATTTTTTATTATTTTTAAAA-ATTAAAGTGTA
1 ATTTTATTA-TTTTTATAATTTTTAAAAGATTAAAGTAAA
81912598 ATTTTATT
1 ATTTTATT
81912606 TTTATTAATT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
39 23 0.57
40 17 0.43
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.60
Consensus pattern (39 bp):
ATTTTATTATTTTTATAATTTTTAAAAGATTAAAGTAAA
Found at i:81912631 original size:16 final size:16
Alignment explanation
Indices: 81912612--81912667 Score: 60
Period size: 18 Copynumber: 3.4 Consensus size: 16
81912602 TATTTTTATT
*
81912612 AATTTAAGATTTTAAA
1 AATTTAAAATTTTAAA
81912628 AATTTTAAAAATTTTAAA
1 AA-TTT-AAAATTTTAAA
**
81912646 AA-TTAAAATAATAAA
1 AATTTAAAATTTTAAA
81912661 AATTTAA
1 AATTTAA
81912668 TTTTAGAGGG
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
15 11 0.32
16 8 0.24
17 3 0.09
18 12 0.35
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (16 bp):
AATTTAAAATTTTAAA
Found at i:81912637 original size:8 final size:9
Alignment explanation
Indices: 81912620--81912649 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
81912610 TTAATTTAAG
81912620 ATTTTAAAA
1 ATTTTAAAA
81912629 ATTTTAAAA
1 ATTTTAAAA
81912638 ATTTTAAAA
1 ATTTTAAAA
81912647 ATT
1 ATT
81912650 AAAATAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (9 bp):
ATTTTAAAA
Found at i:81913339 original size:65 final size:66
Alignment explanation
Indices: 81913257--81913388 Score: 248
Period size: 65 Copynumber: 2.0 Consensus size: 66
81913247 AATTATTTTA
*
81913257 ACTTCACCTTTGAGATTGAATATTGAACCTAAAACCGAT-AAATTAATTATTTAGTTGATTTGAT
1 ACTTCACCCTTGAGATTGAATATTGAACCTAAAACCGATAAAATTAATTATTTAGTTGATTTGAT
81913321 C
66 C
81913322 ACTTCACCCTTGAGATTGAATATTGAACCTAAAACCGATAAAATTAATTATTTAGTTGATTTGAT
1 ACTTCACCCTTGAGATTGAATATTGAACCTAAAACCGATAAAATTAATTATTTAGTTGATTTGAT
81913387 C
66 C
81913388 A
1 A
81913389 TCGGTCTGAT
Statistics
Matches: 65, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
65 38 0.58
66 27 0.42
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.37
Consensus pattern (66 bp):
ACTTCACCCTTGAGATTGAATATTGAACCTAAAACCGATAAAATTAATTATTTAGTTGATTTGAT
C
Found at i:81921101 original size:16 final size:17
Alignment explanation
Indices: 81921071--81921105 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
81921061 ATTAAGTAAA
81921071 AATATTATAAGATTTAT
1 AATATTATAAGATTTAT
*
81921088 AATA-TATAATATTTAT
1 AATATTATAAGATTTAT
81921104 AA
1 AA
81921106 AAATGTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (17 bp):
AATATTATAAGATTTAT
Found at i:81929604 original size:5 final size:6
Alignment explanation
Indices: 81929590--81929614 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
81929580 AAATCTCAAC
81929590 AAAATA AAAATA AAAATA AAAATA A
1 AAAATA AAAATA AAAATA AAAATA A
81929615 TTTAATTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:81935647 original size:16 final size:16
Alignment explanation
Indices: 81935603--81935649 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
81935593 GACCCAAATT
* *
81935603 AAAATAAATTGGATTC
1 AAAATAAATTGAACTC
*
81935619 AAAAT-GATCTGAACTC
1 AAAATAAAT-TGAACTC
81935635 AAAATAAATTGAACT
1 AAAATAAATTGAACT
81935650 TGACTCGAAC
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
15 2 0.08
16 21 0.84
17 2 0.08
ACGTcount: A:0.51, C:0.11, G:0.11, T:0.28
Consensus pattern (16 bp):
AAAATAAATTGAACTC
Found at i:81942156 original size:26 final size:26
Alignment explanation
Indices: 81942074--81942164 Score: 94
Period size: 26 Copynumber: 3.5 Consensus size: 26
81942064 ATTACATATT
*
81942074 ATTTTATTAAATTATATTTAATAATA
1 ATTTTATTAAAATATATTTAATAATA
* * ** *
81942100 ATTATGTTAAAATATGGTTAA-ATTA
1 ATTTTATTAAAATATATTTAATAATA
* *
81942125 TTTTTTAATAAAATATATTTAATAATA
1 -ATTTTATTAAAATATATTTAATAATA
81942152 ATTTTATTAAAAT
1 ATTTTATTAAAAT
81942165 TTAATAACAA
Statistics
Matches: 48, Mismatches: 15, Indels: 4
0.72 0.22 0.06
Matches are distributed among these distances:
25 3 0.06
26 42 0.88
27 3 0.06
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (26 bp):
ATTTTATTAAAATATATTTAATAATA
Found at i:81942355 original size:16 final size:16
Alignment explanation
Indices: 81942334--81942390 Score: 78
Period size: 16 Copynumber: 3.6 Consensus size: 16
81942324 TGAATTACTT
81942334 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
**
81942350 ATTACAGCTCTATTTA
1 ATTACAGCTCTATTCC
*
81942366 ATTACAACTCTATTCC
1 ATTACAGCTCTATTCC
*
81942382 ATTAGAGCT
1 ATTACAGCT
81942391 AACCAAACGT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:81942919 original size:27 final size:28
Alignment explanation
Indices: 81942879--81942931 Score: 81
Period size: 27 Copynumber: 1.9 Consensus size: 28
81942869 TAGTAAACTT
*
81942879 TAAAATACACATAAAATTATAAAAATTA
1 TAAAATACACATAAAAATATAAAAATTA
*
81942907 TAAAAT-CATATAAAAATATAAAAAT
1 TAAAATACACATAAAAATATAAAAAT
81942932 ATTTATAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 17 0.74
28 6 0.26
ACGTcount: A:0.66, C:0.06, G:0.00, T:0.28
Consensus pattern (28 bp):
TAAAATACACATAAAAATATAAAAATTA
Found at i:81942930 original size:8 final size:8
Alignment explanation
Indices: 81942889--81942933 Score: 54
Period size: 8 Copynumber: 5.2 Consensus size: 8
81942879 TAAAATACAC
*
81942889 ATAAAATT
1 ATAAAAAT
81942897 ATAAAAATT
1 ATAAAAA-T
81942906 ATAAAATCAT
1 ATAAAA--AT
81942916 ATAAAAAT
1 ATAAAAAT
81942924 ATAAAAAT
1 ATAAAAAT
81942932 AT
1 AT
81942934 TTATAAATAA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
8 18 0.55
9 7 0.21
10 7 0.21
11 1 0.03
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (8 bp):
ATAAAAAT
Found at i:81943187 original size:51 final size:53
Alignment explanation
Indices: 81943070--81943188 Score: 152
Period size: 55 Copynumber: 2.2 Consensus size: 53
81943060 TTAAATAAGT
* * *
81943070 TAAAGTCTTCAAGGAATGAATTATGCATGCTATGGAGCTTTTCGTTATGCTATGC
1 TAAAGTGTTCAAGAAAGGAATTATGCATGCTA--GAGCTTTTCGTTATGCTATGC
* *
81943125 TAAAGTGTTCAAGAAAGGAATTATGCATGCTA-CGCTTTT-GTTATGCTATGT
1 TAAAGTGTTCAAGAAAGGAATTATGCATGCTAGAGCTTTTCGTTATGCTATGC
*
81943176 TGAAGTGTTCAAG
1 TAAAGTGTTCAAG
81943189 CAATAAATTA
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
51 23 0.40
52 6 0.10
55 29 0.50
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.36
Consensus pattern (53 bp):
TAAAGTGTTCAAGAAAGGAATTATGCATGCTAGAGCTTTTCGTTATGCTATGC
Found at i:81943198 original size:51 final size:53
Alignment explanation
Indices: 81943070--81943199 Score: 156
Period size: 51 Copynumber: 2.5 Consensus size: 53
81943060 TTAAATAAGT
* *
81943070 TAAAGTCTTCAAGGAATGAATTATGCATGCTATGGAGCTTTTCGTTATGCTATGC
1 TAAAGTGTTCAAGAAATGAATTATGCATGCTA--GAGCTTTTCGTTATGCTATGC
* * *
81943125 TAAAGTGTTCAAGAAAGGAATTATGCATGCTA-CGCTTTT-GTTATGCTATGT
1 TAAAGTGTTCAAGAAATGAATTATGCATGCTAGAGCTTTTCGTTATGCTATGC
* * *
81943176 TGAAGTGTTCAAGCAATAAATTAT
1 TAAAGTGTTCAAGAAATGAATTAT
81943200 ATATATATAT
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
51 31 0.47
52 6 0.09
55 29 0.44
ACGTcount: A:0.31, C:0.12, G:0.21, T:0.36
Consensus pattern (53 bp):
TAAAGTGTTCAAGAAATGAATTATGCATGCTAGAGCTTTTCGTTATGCTATGC
Found at i:81943984 original size:24 final size:24
Alignment explanation
Indices: 81943957--81944008 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
81943947 TTAGTAAGTC
*
81943957 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
81943981 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
81944005 AAAT
1 AAAT
81944009 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:81945955 original size:24 final size:24
Alignment explanation
Indices: 81945928--81945979 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
81945918 TTAGTAAGTC
*
81945928 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
81945952 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
81945976 AAAT
1 AAAT
81945980 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:81948342 original size:17 final size:17
Alignment explanation
Indices: 81948322--81948360 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
81948312 TTTTAATTTG
81948322 AATTTTGGTTTTCTTAA
1 AATTTTGGTTTTCTTAA
81948339 AATTTTGGTTTTCTTAA
1 AATTTTGGTTTTCTTAA
81948356 AATTT
1 AATTT
81948361 GGAGCAAGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.26, C:0.05, G:0.10, T:0.59
Consensus pattern (17 bp):
AATTTTGGTTTTCTTAA
Found at i:81950896 original size:19 final size:19
Alignment explanation
Indices: 81950872--81950909 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
81950862 GAAATGAATA
*
81950872 ATTTCAGGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
81950891 ATTTCAAGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
81950910 GCAATCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.32
Consensus pattern (19 bp):
ATTTCAAGCAAATAGGTTG
Found at i:81951823 original size:19 final size:20
Alignment explanation
Indices: 81951790--81951829 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
81951780 GTATATATAT
81951790 ATAAAATAAAGAAAAT-AAA
1 ATAAAATAAAGAAAATGAAA
81951809 ATAAAATAACA-AAAATGAAA
1 ATAAAATAA-AGAAAATGAAA
81951829 A
1 A
81951830 ATGAACAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.78, C:0.03, G:0.05, T:0.15
Consensus pattern (20 bp):
ATAAAATAAAGAAAATGAAA
Found at i:81952532 original size:28 final size:28
Alignment explanation
Indices: 81952501--81952556 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
81952491 ATTAGTAAAC
* *
81952501 TATAAAATACATATAAAATTATAAAAAT
1 TATAAAATACATAAAAAAATATAAAAAT
*
81952529 TATAAAATGCATAAAAAAATATAAAAAT
1 TATAAAATACATAAAAAAATATAAAAAT
81952557 ATTTACAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.66, C:0.04, G:0.02, T:0.29
Consensus pattern (28 bp):
TATAAAATACATAAAAAAATATAAAAAT
Found at i:81954587 original size:17 final size:17
Alignment explanation
Indices: 81954556--81954612 Score: 57
Period size: 17 Copynumber: 3.5 Consensus size: 17
81954546 TAATAAATTT
*
81954556 AAAATATAATATATAATA
1 AAAATAT-ATTTATAATA
*
81954574 AAAATATATTTATAAGA
1 AAAATATATTTATAATA
*
81954591 ATAATA-A-TTAT-ATA
1 AAAATATATTTATAATA
81954605 AAAATATA
1 AAAATATA
81954613 AAATATATTG
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
14 7 0.21
15 5 0.15
16 1 0.03
17 13 0.39
18 7 0.21
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (17 bp):
AAAATATATTTATAATA
Found at i:81955115 original size:40 final size:38
Alignment explanation
Indices: 81955070--81955191 Score: 144
Period size: 40 Copynumber: 3.2 Consensus size: 38
81955060 AAGATTACAA
*
81955070 AATCATATCTTCTAAGATTGTATATCATATCTATGATTGC
1 AATCATA--TTCTAAGATTGTATATCATATCTAAGATTGC
81955110 AATCATA-TCTAAGATTGTATCGTATCATATCTAAGATTGC
1 AATCATATTCTAAGATTGTA---TATCATATCTAAGATTGC
*
81955150 AATCATATT-TAAGATTG--TATCATATCTAAGATTAC
1 AATCATATTCTAAGATTGTATATCATATCTAAGATTGC
81955185 ATATCAT
1 A-ATCAT
81955192 TGAAGATTAT
Statistics
Matches: 75, Mismatches: 2, Indels: 14
0.82 0.02 0.15
Matches are distributed among these distances:
35 18 0.24
36 5 0.07
37 12 0.16
40 39 0.52
41 1 0.01
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.40
Consensus pattern (38 bp):
AATCATATTCTAAGATTGTATATCATATCTAAGATTGC
Found at i:81955116 original size:18 final size:18
Alignment explanation
Indices: 81955080--81955182 Score: 109
Period size: 18 Copynumber: 5.5 Consensus size: 18
81955070 AATCATATCT
*
81955080 TCTAAGATTGTATATCATA
1 TCTAAGATTGCA-ATCATA
*
81955099 TCTATGATTGCAATCATA
1 TCTAAGATTGCAATCATA
*
81955117 TCTAAGATTGTATCGTATCATA
1 TCTAAGATTG---C-AATCATA
81955139 TCTAAGATTGCAATCATA
1 TCTAAGATTGCAATCATA
* *
81955157 TTTAAGATTG-TATCATA
1 TCTAAGATTGCAATCATA
81955174 TCTAAGATT
1 TCTAAGATT
81955183 ACATATCATT
Statistics
Matches: 72, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
17 14 0.19
18 30 0.42
19 11 0.15
21 1 0.01
22 16 0.22
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.41
Consensus pattern (18 bp):
TCTAAGATTGCAATCATA
Found at i:81955788 original size:83 final size:83
Alignment explanation
Indices: 81955575--81955927 Score: 598
Period size: 83 Copynumber: 4.2 Consensus size: 83
81955565 TTCGATTTGT
* * *
81955575 AAGGATGTCAAATCATCTTGAGTCTGTTTGAGAACATTTGAGAATCATATCTGCAAGGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGA
*
81955640 CTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
* * * *
81955658 AAGGATGCCTAAACCATCTTGAGTCTGTTTGAGAACATTTGAAAGTCATGTCTGTAGGGTCCTCG
1 AAGGATGCC-AAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCG
*
81955723 GTTTGTTCCTTGTAAGCAC
65 ATTTGTTCCTTGTAAGCAC
*
81955742 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGA
81955807 TTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
*
81955825 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGA
81955890 TTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
81955908 AAGGATGCCAAACCATCTTG
1 AAGGATGCCAAACCATCTTG
81955928 GATCTGCTTC
Statistics
Matches: 254, Mismatches: 15, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
83 179 0.70
84 75 0.30
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (83 bp):
AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGA
TTTGTTCCTTGTAAGCAC
Found at i:81956062 original size:119 final size:119
Alignment explanation
Indices: 81955851--81956105 Score: 411
Period size: 119 Copynumber: 2.1 Consensus size: 119
81955841 CTTGAGTCTG
* * * * * *
81955851 TTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
81955916 CAAACCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
66 CAAACCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
* *
81955970 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
* * *
81956035 CAGATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGTTATA
66 CAAACCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
81956089 TTTGAGAACGTCTGAGA
1 TTTGAGAACGTCTGAGA
81956106 AACATCTGAA
Statistics
Matches: 125, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
119 125 1.00
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (119 bp):
TTTGAGAACGTCTGAGAGTCAAATCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
CAAACCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
Found at i:81956110 original size:43 final size:43
Alignment explanation
Indices: 81956062--81956148 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
81956052 GCTTCAGTAT
81956062 AAACATCTGAAGGTTAGATCTGTTATATTTGAGAACGTCTGAG
1 AAACATCTGAAGGTTAGATCTGTTATATTTGAGAACGTCTGAG
81956105 AAACATCTGAAGGTTAGATCTGTTATATTTGAGAACGTCTGAG
1 AAACATCTGAAGGTTAGATCTGTTATATTTGAGAACGTCTGAG
81956148 A
1 A
81956149 GTCAAATCTG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.32
Consensus pattern (43 bp):
AAACATCTGAAGGTTAGATCTGTTATATTTGAGAACGTCTGAG
Found at i:81956210 original size:162 final size:162
Alignment explanation
Indices: 81955943--81956267 Score: 614
Period size: 162 Copynumber: 2.0 Consensus size: 162
81955933 GCTTCAGTAT
81955943 AAACATCTGAAGGTTAGATCTGCTATATTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCG
1 AAACATCTGAAGGTTAGATCTGCTATATTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCG
* *
81956008 ATTTGTTTCTTGTAAACACAAGAATACCAGATCATCTTGGATCTGCTTCAGTATAAACATCTGAA
66 ATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAA
*
81956073 GGTTAGATCTGTTATATTTGAGAACGTCTGAG
131 GGTTAGATCTGCTATATTTGAGAACGTCTGAG
*
81956105 AAACATCTGAAGGTTAGATCTGTTATATTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCG
1 AAACATCTGAAGGTTAGATCTGCTATATTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCG
81956170 ATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAA
66 ATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAA
81956235 GGTTAGATCTGCTATATTTGAGAACGTCTGAG
131 GGTTAGATCTGCTATATTTGAGAACGTCTGAG
81956267 A
1 A
81956268 GTCAAATCTG
Statistics
Matches: 159, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
162 159 1.00
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (162 bp):
AAACATCTGAAGGTTAGATCTGCTATATTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCG
ATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAA
GGTTAGATCTGCTATATTTGAGAACGTCTGAG
Found at i:81956218 original size:281 final size:281
Alignment explanation
Indices: 81955851--81956386 Score: 946
Period size: 281 Copynumber: 1.9 Consensus size: 281
81955841 CTTGAGTCTG
* * * * *
81955851 TTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGC
1 TTTGAGAACATCTGAGAGTCAAATCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
81955916 CAAACCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATTTGAGAACGT
66 CAAACCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATTTGAGAACGT
* *
81955981 CTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACCAGATCATCTT
131 CTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTT
*
81956046 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGTTATATTTGAGAACGTCTGAGAAACAT
196 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATTTGAGAACGTCTGAGAAACAT
81956111 CTGAAGGTTAGATCTGTTATA
261 CTGAAGGTTAGATCTGTTATA
* *
81956132 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
1 TTTGAGAACATCTGAGAGTCAAATCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
*
81956197 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATTTGAGAACGT
66 CAAACCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATTTGAGAACGT
*
81956262 CTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTT
131 CTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTT
* *
81956327 GGATCTGCTTCAGTATAAATATCTGAAGGTTAGATCTGCTATCTTTGAGAACGTCTGAGA
196 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATTTGAGAACGTCTGAGA
81956387 GTCAAATCTA
Statistics
Matches: 241, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
281 241 1.00
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.33
Consensus pattern (281 bp):
TTTGAGAACATCTGAGAGTCAAATCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
CAAACCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATTTGAGAACGT
CTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTT
GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATTTGAGAACGTCTGAGAAACAT
CTGAAGGTTAGATCTGTTATA
Found at i:81956319 original size:119 final size:119
Alignment explanation
Indices: 81956105--81956493 Score: 697
Period size: 119 Copynumber: 3.3 Consensus size: 119
81956095 AACGTCTGAG
*
81956105 AAACATCTGAAGGTTAGATCTGTTATATTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCG
1 AAACATCTGAAGGTTAGATCTGCTATATTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCG
81956170 ATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTGGATCTGCTTCAGTAT
66 ATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTGGATCTGCTTCAGTAT
81956224 AAACATCTGAAGGTTAGATCTGCTATATTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCG
1 AAACATCTGAAGGTTAGATCTGCTATATTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCG
*
81956289 ATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCAGTAT
66 ATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTGGATCTGCTTCAGTAT
* * *
81956343 AAATATCTGAAGGTTAGATCTGCTATCTTTGAGAACGTCTGAGAGTCAAATCTACTATGTCCTCG
1 AAACATCTGAAGGTTAGATCTGCTATATTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCG
* * *
81956408 ATTTGTTCATTGTAAACACAAGATTACCAAATCATCTTGGATCTACTTCAGTAT
66 ATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTGGATCTGCTTCAGTAT
*
81956462 AAACATCTGAAGGTTAGATCTGCTATCTTTGA
1 AAACATCTGAAGGTTAGATCTGCTATATTTGA
81956494 TCTGTTCCCT
Statistics
Matches: 260, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
119 260 1.00
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (119 bp):
AAACATCTGAAGGTTAGATCTGCTATATTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCG
ATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTGGATCTGCTTCAGTAT
Found at i:81956527 original size:44 final size:44
Alignment explanation
Indices: 81956479--81956672 Score: 180
Period size: 44 Copynumber: 4.4 Consensus size: 44
81956469 TGAAGGTTAG
81956479 ATCTGCTATCTTTGATCTGTTCCCTATAAACACAGGGATGCCAA
1 ATCTGCTATCTTTGATCTGTTCCCTATAAACACAGGGATGCCAA
* *
81956523 ATCTGCTATC-TTCAACTTGTTCCCTATAAACACAGGGATGCC--
1 ATCTGCTATCTTTGATC-TGTTCCCTATAAACACAGGGATGCCAA
** ** * * * * * *
81956565 ATGCTGAAATCTTCAATCTGCTTCGCTGTAAGCACAGGAATGTCAG
1 AT-CTGCTATCTTTGATCTG-TTCCCTATAAACACAGGGATGCCAA
* * *
81956611 ATCTACTATCTTTGATCTATTCCCTATAAACATAGGGATGCCAA
1 ATCTGCTATCTTTGATCTGTTCCCTATAAACACAGGGATGCCAA
*
81956655 ATCTTG-TTTCTTTGATCT
1 ATC-TGCTATCTTTGATCT
81956673 ACATTGTCCC
Statistics
Matches: 116, Mismatches: 27, Indels: 14
0.74 0.17 0.09
Matches are distributed among these distances:
42 2 0.02
43 12 0.10
44 88 0.76
45 12 0.10
46 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.34
Consensus pattern (44 bp):
ATCTGCTATCTTTGATCTGTTCCCTATAAACACAGGGATGCCAA
Found at i:81957541 original size:7 final size:7
Alignment explanation
Indices: 81957529--81957561 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
81957519 GCCTCTCCAT
81957529 TTTTTTC
1 TTTTTTC
81957536 TTTTTTC
1 TTTTTTC
81957543 TTTTTTCC
1 TTTTTT-C
81957551 TTTTTT-
1 TTTTTTC
81957557 TTTTT
1 TTTTT
81957562 GAAATAGAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
6 5 0.20
7 13 0.52
8 7 0.28
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTC
Found at i:81963910 original size:17 final size:17
Alignment explanation
Indices: 81963888--81963948 Score: 86
Period size: 17 Copynumber: 3.5 Consensus size: 17
81963878 AATCATATCT
81963888 TCTAAGATTGTATCATA
1 TCTAAGATTGTATCATA
* *
81963905 TCTAAGATTGCAATTATA
1 TCTAAGATTG-TATCATA
*
81963923 TTTAAGATTGTATCATA
1 TCTAAGATTGTATCATA
81963940 TCTAAGATT
1 TCTAAGATT
81963949 ACATATCATT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
17 23 0.62
18 14 0.38
ACGTcount: A:0.36, C:0.10, G:0.11, T:0.43
Consensus pattern (17 bp):
TCTAAGATTGTATCATA
Found at i:81968277 original size:39 final size:39
Alignment explanation
Indices: 81968234--81968309 Score: 116
Period size: 39 Copynumber: 1.9 Consensus size: 39
81968224 AAATCTATTT
** *
81968234 ATAACAACTTAATTTTTATTTAAATATATATATAATTCA
1 ATAACAACCCAATTTTTATTTAAATATAAATATAATTCA
*
81968273 ATAACAACCCAATTTTTATTTAAATTTAAATATAATT
1 ATAACAACCCAATTTTTATTTAAATATAAATATAATT
81968310 GAATCTTATA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.46, C:0.09, G:0.00, T:0.45
Consensus pattern (39 bp):
ATAACAACCCAATTTTTATTTAAATATAAATATAATTCA
Found at i:81968436 original size:11 final size:11
Alignment explanation
Indices: 81968420--81968450 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
81968410 GATAAACAAA
81968420 AAAAAAAAAAG
1 AAAAAAAAAAG
81968431 AAAAAAAAAAG
1 AAAAAAAAAAG
81968442 AAAAGAAAA
1 AAAA-AAAA
81968451 GTCAAGAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 15 0.79
12 4 0.21
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:81968438 original size:16 final size:16
Alignment explanation
Indices: 81968417--81968450 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
81968407 TGAGATAAAC
81968417 AAAAAAAAAAAAAGAA
1 AAAAAAAAAAAAAGAA
*
81968433 AAAAAAAAGAAAAGAA
1 AAAAAAAAAAAAAGAA
81968449 AA
1 AA
81968451 GTCAAGAATG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAAAAAGAA
Found at i:81970399 original size:34 final size:34
Alignment explanation
Indices: 81970343--81970423 Score: 126
Period size: 34 Copynumber: 2.4 Consensus size: 34
81970333 CCATCTCAAT
*
81970343 ACAGTATCAAATATGCAGTAGGGCCTTAGCCCATC
1 ACAGTATC-AGTATGCAGTAGGGCCTTAGCCCATC
* *
81970378 ACAGTATCAGTATGCATTAGGGTCTTAGCCCATC
1 ACAGTATCAGTATGCAGTAGGGCCTTAGCCCATC
81970412 ACAGTATCAGTA
1 ACAGTATCAGTA
81970424 GTAGTCATGC
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
34 35 0.81
35 8 0.19
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (34 bp):
ACAGTATCAGTATGCAGTAGGGCCTTAGCCCATC
Found at i:81973138 original size:26 final size:25
Alignment explanation
Indices: 81973099--81973208 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 25
81973089 TGATACAAAT
*
81973099 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAAT-GGTTAGGTAAATGTTTCA
81973125 TGATAATGGATTAGGTAAATGTTTCA
1 TGATAATGG-TTAGGTAAATGTTTCA
81973151 TGATAATGTGTTAGGTAAATGTTTCA
1 TGATAATG-GTTAGGTAAATGTTTCA
81973177 TGATAATGGTTTAGGTAAATGTTTCA
1 TGATAATGG-TTAGGTAAATGTTTCA
81973203 TGATAA
1 TGATAA
81973209 GAATTTCATG
Statistics
Matches: 80, Mismatches: 1, Indels: 6
0.92 0.01 0.07
Matches are distributed among these distances:
25 3 0.04
26 76 0.95
27 1 0.01
ACGTcount: A:0.34, C:0.05, G:0.23, T:0.39
Consensus pattern (25 bp):
TGATAATGGTTAGGTAAATGTTTCA
Found at i:81973158 original size:13 final size:13
Alignment explanation
Indices: 81973142--81973208 Score: 52
Period size: 13 Copynumber: 5.2 Consensus size: 13
81973132 GGATTAGGTA
81973142 AATGTTTCATGAT
1 AATGTTTCATGAT
*
81973155 AATGTGTT-A-GGT
1 AATGT-TTCATGAT
81973167 AAATGTTTCATGAT
1 -AATGTTTCATGAT
*
81973181 AATGGTTT-A-GGT
1 AAT-GTTTCATGAT
81973193 AAATGTTTCATGAT
1 -AATGTTTCATGAT
81973207 AA
1 AA
81973209 GAATTTCATG
Statistics
Matches: 42, Mismatches: 4, Indels: 16
0.68 0.06 0.26
Matches are distributed among these distances:
12 10 0.24
13 22 0.52
14 10 0.24
ACGTcount: A:0.33, C:0.04, G:0.21, T:0.42
Consensus pattern (13 bp):
AATGTTTCATGAT
Found at i:81974722 original size:26 final size:26
Alignment explanation
Indices: 81974693--81974745 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
81974683 TTTACAGTTT
81974693 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
81974719 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
81974745 T
1 T
81974746 GCATGTTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:81976315 original size:39 final size:40
Alignment explanation
Indices: 81976272--81976352 Score: 137
Period size: 40 Copynumber: 2.0 Consensus size: 40
81976262 AAATCTATTT
* *
81976272 ATAACAACTTAATTTT-TATTTAAATTTATATATAATTCA
1 ATAACAACTTAATTTTGTATTTAAATTTAAATATAAATCA
81976311 ATAACAACTTAATTTTGTATTTAAATTTAAATATAAATCA
1 ATAACAACTTAATTTTGTATTTAAATTTAAATATAAATCA
81976351 AT
1 AT
81976353 CTTATAATAT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
39 16 0.41
40 23 0.59
ACGTcount: A:0.46, C:0.07, G:0.01, T:0.46
Consensus pattern (40 bp):
ATAACAACTTAATTTTGTATTTAAATTTAAATATAAATCA
Found at i:81976567 original size:50 final size:50
Alignment explanation
Indices: 81976512--81976607 Score: 174
Period size: 50 Copynumber: 1.9 Consensus size: 50
81976502 ATTCCACTTT
**
81976512 TGGCCAAGAAAATGAAAATAAAGACAAAAAGTTGTTCAATTATTGATTTA
1 TGGCCAAGAAAATGAAAATAAAGACAAAAAACTGTTCAATTATTGATTTA
81976562 TGGCCAAGAAAATGAAAATAAAGACAAAAAACTGTTCAATTATTGA
1 TGGCCAAGAAAATGAAAATAAAGACAAAAAACTGTTCAATTATTGA
81976608 GTCTTAGCTC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 44 1.00
ACGTcount: A:0.50, C:0.09, G:0.16, T:0.25
Consensus pattern (50 bp):
TGGCCAAGAAAATGAAAATAAAGACAAAAAACTGTTCAATTATTGATTTA
Found at i:81980558 original size:11 final size:10
Alignment explanation
Indices: 81980542--81980571 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
81980532 TGAGATAAAC
81980542 AAAAAAAAAG
1 AAAAAAAAAG
81980552 AAAAAAAAAG
1 AAAAAAAAAG
*
81980562 AAAATAAAAG
1 AAAAAAAAAG
81980572 TCAAGAATGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.87, C:0.00, G:0.10, T:0.03
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:81983318 original size:121 final size:121
Alignment explanation
Indices: 81983092--81983329 Score: 293
Period size: 121 Copynumber: 2.0 Consensus size: 121
81983082 GATATGGGGA
*
81983092 TTTGTCGATTTTCACACAGTCGTGTCCCTTGGGCACACGAGTGTGTGAATTTAGGAATTAAGGAT
1 TTTGTCGATTTTCACACAGCCGTGTCCCTTGGGCACACGAGTGTGTGAATTTAGGAATTAAGGAT
* * **
81983157 TTAGGGATTTGGAGTCACATGGCCTGGCCACATGGCCGTGTAGCCGATTTGGTAAT
66 TGAGGGATTTGGAGTCACACGGCCTGGCCACACAGCCGTGTAGCCGATTTGGTAAT
* * * * *
81983213 TTTGTTGATTTTCACACGGCCGTGTCCAC-TGGGCACATGGGTGTGTGAATTTTA-GAATTAGGG
1 TTTGTCGATTTTCACACAGCCGTGTCC-CTTGGGCACACGAGTGTGTGAA-TTTAGGAATTAAGG
* * * * *
81983276 ATTCGA-GGATTTTGAGTCACACGGCCTGGCCATACAGTCGTGTGGCTGATTTGG
64 ATT-GAGGGATTTGGAGTCACACGGCCTGGCCACACAGCCGTGTAGCCGATTTGG
81983330 GGATTTAGGG
Statistics
Matches: 99, Mismatches: 15, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
121 93 0.94
122 6 0.06
ACGTcount: A:0.20, C:0.18, G:0.30, T:0.32
Consensus pattern (121 bp):
TTTGTCGATTTTCACACAGCCGTGTCCCTTGGGCACACGAGTGTGTGAATTTAGGAATTAAGGAT
TGAGGGATTTGGAGTCACACGGCCTGGCCACACAGCCGTGTAGCCGATTTGGTAAT
Found at i:81985858 original size:18 final size:18
Alignment explanation
Indices: 81985832--81985871 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
81985822 TTTTTATCAA
81985832 TAATCAAATTCTACCCCT
1 TAATCAAATTCTACCCCT
* *
81985850 TAATTAAATTCTATCCCT
1 TAATCAAATTCTACCCCT
81985868 TAAT
1 TAAT
81985872 ACATCGATGC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.35, C:0.25, G:0.00, T:0.40
Consensus pattern (18 bp):
TAATCAAATTCTACCCCT
Found at i:81990739 original size:65 final size:65
Alignment explanation
Indices: 81990665--81990795 Score: 262
Period size: 65 Copynumber: 2.0 Consensus size: 65
81990655 ATTCAGCAAT
81990665 ACGAATGATCAAACGTATTTAAGAAACTTACCAAAAATCTAATCTCAACTAAAGGGAAGCAATAA
1 ACGAATGATCAAACGTATTTAAGAAACTTACCAAAAATCTAATCTCAACTAAAGGGAAGCAATAA
81990730 ACGAATGATCAAACGTATTTAAGAAACTTACCAAAAATCTAATCTCAACTAAAGGGAAGCAATAA
1 ACGAATGATCAAACGTATTTAAGAAACTTACCAAAAATCTAATCTCAACTAAAGGGAAGCAATAA
81990795 A
1 A
81990796 AAAAAGGGTA
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 66 1.00
ACGTcount: A:0.50, C:0.17, G:0.12, T:0.21
Consensus pattern (65 bp):
ACGAATGATCAAACGTATTTAAGAAACTTACCAAAAATCTAATCTCAACTAAAGGGAAGCAATAA
Found at i:81990876 original size:76 final size:76
Alignment explanation
Indices: 81990779--81990937 Score: 309
Period size: 76 Copynumber: 2.1 Consensus size: 76
81990769 TAATCTCAAC
81990779 TAAAGGGAAGCAATAAAAAAAAGGGTAATTCACAATATTAATGGGGTTTAAGGGTTAAAATGGAT
1 TAAAGGGAAGCAATAAAAAAAAGGGTAATTCACAATATTAATGGGGTTTAAGGGTTAAAATGGAT
81990844 GGGATTAGGCT
66 GGGATTAGGCT
81990855 TAAAGGGAAGCAATAAAAAAAAGGGTAATTCACAATATTAATGGGGTTTAAGGGTTAAAATGGAT
1 TAAAGGGAAGCAATAAAAAAAAGGGTAATTCACAATATTAATGGGGTTTAAGGGTTAAAATGGAT
81990920 GGGATTAGGCT
66 GGGATTAGGCT
*
81990931 AAAAGGG
1 TAAAGGG
81990938 GTTTATTAGT
Statistics
Matches: 82, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
76 82 1.00
ACGTcount: A:0.43, C:0.05, G:0.28, T:0.24
Consensus pattern (76 bp):
TAAAGGGAAGCAATAAAAAAAAGGGTAATTCACAATATTAATGGGGTTTAAGGGTTAAAATGGAT
GGGATTAGGCT
Found at i:81993657 original size:16 final size:17
Alignment explanation
Indices: 81993625--81993657 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
81993615 AAATTTCATC
*
81993625 ACAAATTATTATTTGTG
1 ACAAATTATTATATGTG
81993642 ACAAATT-TTATATGTG
1 ACAAATTATTATATGTG
81993658 GCACAATAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.36, C:0.06, G:0.12, T:0.45
Consensus pattern (17 bp):
ACAAATTATTATATGTG
Found at i:81993723 original size:16 final size:17
Alignment explanation
Indices: 81993702--81993734 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
81993692 TTGTGTCGAG
81993702 TTAAATT-ATACTACAA
1 TTAAATTGATACTACAA
*
81993718 TTAAATTGTTACTACAA
1 TTAAATTGATACTACAA
81993735 ATGTATAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.45, C:0.12, G:0.03, T:0.39
Consensus pattern (17 bp):
TTAAATTGATACTACAA
Found at i:81998322 original size:16 final size:18
Alignment explanation
Indices: 81998303--81998345 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
81998293 ATTGCTTTCA
81998303 TATTTTATTTG-T-TCTT
1 TATTTTATTTGCTCTCTT
*
81998319 TATTCTATTTGTCTCTCTT
1 TATTTTATTTG-CTCTCTT
81998338 TATTTTAT
1 TATTTTAT
81998346 AAATTTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 10 0.45
18 1 0.05
19 11 0.50
ACGTcount: A:0.14, C:0.12, G:0.05, T:0.70
Consensus pattern (18 bp):
TATTTTATTTGCTCTCTT
Found at i:82009241 original size:17 final size:17
Alignment explanation
Indices: 82009182--82009241 Score: 63
Period size: 17 Copynumber: 3.5 Consensus size: 17
82009172 TAATAAATTT
82009182 AAAATATAATATATAATAA
1 AAAATATAAT-TAT-ATAA
82009201 AAAATAT-ATT-TAT-A
1 AAAATATAATTATATAA
*
82009215 AGAATAATAATTATATAA
1 AAAAT-ATAATTATATAA
82009233 AAAATATAA
1 AAAATATAA
82009242 AATATATTGG
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
14 5 0.14
15 4 0.11
16 4 0.11
17 8 0.23
18 7 0.20
19 7 0.20
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (17 bp):
AAAATATAATTATATAA
Found at i:82009747 original size:17 final size:17
Alignment explanation
Indices: 82009725--82009785 Score: 86
Period size: 17 Copynumber: 3.5 Consensus size: 17
82009715 AATCATATCT
82009725 TCTAAGATTGTATCATA
1 TCTAAGATTGTATCATA
* *
82009742 TCTAAGATTGCAATTATA
1 TCTAAGATTG-TATCATA
*
82009760 TTTAAGATTGTATCATA
1 TCTAAGATTGTATCATA
82009777 TCTAAGATT
1 TCTAAGATT
82009786 ACATATCATT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
17 23 0.62
18 14 0.38
ACGTcount: A:0.36, C:0.10, G:0.11, T:0.43
Consensus pattern (17 bp):
TCTAAGATTGTATCATA
Found at i:82010942 original size:30 final size:30
Alignment explanation
Indices: 82010915--82010988 Score: 112
Period size: 30 Copynumber: 2.5 Consensus size: 30
82010905 TTTTCAAGTG
**
82010915 TGGTGGTATTGAGATTTCTTTTGTCAAGCC
1 TGGTGGTATTGAGATTTCTTTTGTCAAGAA
* *
82010945 TAGTGGTATTGCGATTTCTTTTGTCAAGAA
1 TGGTGGTATTGAGATTTCTTTTGTCAAGAA
82010975 TGGTGGTATTGAGA
1 TGGTGGTATTGAGA
82010989 CTGTATATGG
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.20, C:0.09, G:0.28, T:0.42
Consensus pattern (30 bp):
TGGTGGTATTGAGATTTCTTTTGTCAAGAA
Found at i:82016546 original size:10 final size:10
Alignment explanation
Indices: 82016531--82016560 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
82016521 AGATAAACAA
82016531 AAAAAAAAAG
1 AAAAAAAAAG
82016541 AAAAAAAAAG
1 AAAAAAAAAG
*
82016551 AAAAGAAAAG
1 AAAAAAAAAG
82016561 TCAAGAATGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:82016549 original size:15 final size:15
Alignment explanation
Indices: 82016529--82016559 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
82016519 TGAGATAAAC
82016529 AAAAAAAAAAAGAAA
1 AAAAAAAAAAAGAAA
*
82016544 AAAAAAGAAAAGAAA
1 AAAAAAAAAAAGAAA
82016559 A
1 A
82016560 GTCAAGAATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAAGAAA
Found at i:82018506 original size:34 final size:34
Alignment explanation
Indices: 82018450--82018530 Score: 126
Period size: 34 Copynumber: 2.4 Consensus size: 34
82018440 CCATCTCAAT
*
82018450 ACAGTATCAAATATGCAGTAGGGCCTTAGCCCATC
1 ACAGTATC-AGTATGCAGTAGGGCCTTAGCCCATC
* *
82018485 ACAGTATCAGTATGCATTAGGGTCTTAGCCCATC
1 ACAGTATCAGTATGCAGTAGGGCCTTAGCCCATC
82018519 ACAGTATCAGTA
1 ACAGTATCAGTA
82018531 GTAGTCATGC
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
34 35 0.81
35 8 0.19
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (34 bp):
ACAGTATCAGTATGCAGTAGGGCCTTAGCCCATC
Found at i:82019512 original size:19 final size:19
Alignment explanation
Indices: 82019477--82019522 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
82019467 CAAAGAACAG
* *
82019477 AGAAGAAGAGAAAGAAAGA
1 AGAAGAAGAAAAAGAAAAA
82019496 AGAAGAA-AAAAATGAAAAA
1 AGAAGAAGAAAAA-GAAAAA
82019515 AGAAGAAG
1 AGAAGAAG
82019523 TGGAGGAGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.72, C:0.00, G:0.26, T:0.02
Consensus pattern (19 bp):
AGAAGAAGAAAAAGAAAAA
Found at i:82021204 original size:26 final size:25
Alignment explanation
Indices: 82021165--82021274 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 25
82021155 TGATACAAAT
*
82021165 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAAT-GGTTAGGTAAATGTTTCA
82021191 TGATAATGGATTAGGTAAATGTTTCA
1 TGATAATGG-TTAGGTAAATGTTTCA
82021217 TGATAATGTGTTAGGTAAATGTTTCA
1 TGATAATG-GTTAGGTAAATGTTTCA
82021243 TGATAATGGTTTAGGTAAATGTTTCA
1 TGATAATGG-TTAGGTAAATGTTTCA
82021269 TGATAA
1 TGATAA
82021275 GAATTTCATG
Statistics
Matches: 80, Mismatches: 1, Indels: 6
0.92 0.01 0.07
Matches are distributed among these distances:
25 3 0.04
26 76 0.95
27 1 0.01
ACGTcount: A:0.34, C:0.05, G:0.23, T:0.39
Consensus pattern (25 bp):
TGATAATGGTTAGGTAAATGTTTCA
Found at i:82021224 original size:13 final size:13
Alignment explanation
Indices: 82021208--82021274 Score: 52
Period size: 13 Copynumber: 5.2 Consensus size: 13
82021198 GGATTAGGTA
82021208 AATGTTTCATGAT
1 AATGTTTCATGAT
*
82021221 AATGTGTT-A-GGT
1 AATGT-TTCATGAT
82021233 AAATGTTTCATGAT
1 -AATGTTTCATGAT
*
82021247 AATGGTTT-A-GGT
1 AAT-GTTTCATGAT
82021259 AAATGTTTCATGAT
1 -AATGTTTCATGAT
82021273 AA
1 AA
82021275 GAATTTCATG
Statistics
Matches: 42, Mismatches: 4, Indels: 16
0.68 0.06 0.26
Matches are distributed among these distances:
12 10 0.24
13 22 0.52
14 10 0.24
ACGTcount: A:0.33, C:0.04, G:0.21, T:0.42
Consensus pattern (13 bp):
AATGTTTCATGAT
Found at i:82022790 original size:26 final size:26
Alignment explanation
Indices: 82022760--82022812 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
82022750 TTTATAGTTT
82022760 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
82022786 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
82022812 T
1 T
82022813 GCATGTTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:82024381 original size:39 final size:40
Alignment explanation
Indices: 82024338--82024418 Score: 137
Period size: 40 Copynumber: 2.0 Consensus size: 40
82024328 AAATCTATTT
* *
82024338 ATAACAACTTAATTTT-TATTTAAATTTATATATAATTCA
1 ATAACAACTTAATTTTGTATTTAAATTTAAATATAAATCA
82024377 ATAACAACTTAATTTTGTATTTAAATTTAAATATAAATCA
1 ATAACAACTTAATTTTGTATTTAAATTTAAATATAAATCA
82024417 AT
1 AT
82024419 CTTATAATAT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
39 16 0.41
40 23 0.59
ACGTcount: A:0.46, C:0.07, G:0.01, T:0.46
Consensus pattern (40 bp):
ATAACAACTTAATTTTGTATTTAAATTTAAATATAAATCA
Found at i:82024642 original size:50 final size:50
Alignment explanation
Indices: 82024587--82024682 Score: 174
Period size: 50 Copynumber: 1.9 Consensus size: 50
82024577 ATTCCACTTT
**
82024587 TGGCCAAGAAAATGAAAATAAAGACAAAAAGTTGTTCAATTATTGATTTA
1 TGGCCAAGAAAATGAAAATAAAGACAAAAAACTGTTCAATTATTGATTTA
82024637 TGGCCAAGAAAATGAAAATAAAGACAAAAAACTGTTCAATTATTGA
1 TGGCCAAGAAAATGAAAATAAAGACAAAAAACTGTTCAATTATTGA
82024683 GTCTTAGCTC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 44 1.00
ACGTcount: A:0.50, C:0.09, G:0.16, T:0.25
Consensus pattern (50 bp):
TGGCCAAGAAAATGAAAATAAAGACAAAAAACTGTTCAATTATTGATTTA
Found at i:82028501 original size:67 final size:66
Alignment explanation
Indices: 82028423--82028626 Score: 338
Period size: 67 Copynumber: 3.0 Consensus size: 66
82028413 TGAAAATAAA
* *
82028423 GACAACAAGTTGAATTCTTGATTGAGTCTTAGCTAAGTTGTTATTGATATTGTTGCCAGTGTAAA
1 GACAAGAAGTTGAATTCTTGATTGAGTCTTAGCTAAGTTGCTATTGATATTGTTGCC-GTGTAAA
82028488 AG
65 AG
*
82028490 GACAAGAAGTTGAATTCTTGATTGAGTCTTAGCTCAGTTGCTATTGATATTGTTGCCGGTGTAAA
1 GACAAGAAGTTGAATTCTTGATTGAGTCTTAGCTAAGTTGCTATTGATATTGTTGCC-GTGTAAA
82028555 AG
65 AG
82028557 GACAAGAAGTTGAATTCTTGATTGAGTCTTAGCTCAA-TTGCTATTGATATTGTTGCCGATGTAA
1 GACAAGAAGTTGAATTCTTGATTGAGTCTTAGCT-AAGTTGCTATTGATATTGTTGCCG-TGTAA
82028621 AAG
64 AAG
82028624 GAC
1 GAC
82028627 GTGAGTTTGA
Statistics
Matches: 130, Mismatches: 5, Indels: 4
0.94 0.04 0.03
Matches are distributed among these distances:
66 1 0.01
67 128 0.98
68 1 0.01
ACGTcount: A:0.29, C:0.12, G:0.24, T:0.36
Consensus pattern (66 bp):
GACAAGAAGTTGAATTCTTGATTGAGTCTTAGCTAAGTTGCTATTGATATTGTTGCCGTGTAAAA
G
Found at i:82049423 original size:132 final size:132
Alignment explanation
Indices: 82049186--82049934 Score: 1257
Period size: 132 Copynumber: 5.7 Consensus size: 132
82049176 AAGGAACATA
* *
82049186 TCCTATCTTCCTATATTAGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATATTGGTGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATACTGGTGG
* * *
82049251 CGAAGTAGATCACAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGATAGCA
66 CGAAGTAGATCGCAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCA
82049316 GG
131 GG
* * *
82049318 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGACGACGCAGATCTTGTCTTCCCATACTGGTGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATACTGGTGG
*
82049383 CGAAGTAGATCGCAGAAAACAGATCTTATCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCA
66 CGAAGTAGATCGCAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCA
82049448 GG
131 GG
* *
82049450 T-CTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCCTACTGATGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATACTGGTGG
82049514 CGAAGTAGATCGCAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCA
66 CGAAGTAGATCGCAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCA
*
82049579 AG
131 GG
*
82049581 TCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATACTGATGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATACTGGTGG
82049646 CGAAGTAGATCGCAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCA
66 CGAAGTAGATCGCAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCA
82049711 GG
131 GG
* * *
82049713 TCCTATCTTTCTATATTGGTAGGAAGTGGATCGAAGACGCAGATCTTGTCTTCCCATACTGGTGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATACTGGTGG
* * *
82049778 CGAAGTAGATCGCAGAAAACAGATCTTGTCTTCATGTATTGGCATGAAGTAAATCGAAGGTAGCA
66 CGAAGTAGATCGCAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCA
*
82049843 GA
131 GG
* * *
82049845 TCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATACAGATCTTGTCTTCCCATACTGGTGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATACTGGTGG
* * *
82049910 TGAAGTAGATCGAAGAAAGCAGATC
66 CGAAGTAGATCGCAGAAAACAGATC
82049935 GACGATGGCG
Statistics
Matches: 582, Mismatches: 34, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
131 124 0.21
132 458 0.79
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.29
Consensus pattern (132 bp):
TCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATACTGGTGG
CGAAGTAGATCGCAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCA
GG
Found at i:82049655 original size:263 final size:264
Alignment explanation
Indices: 82049186--82049934 Score: 1259
Period size: 263 Copynumber: 2.8 Consensus size: 264
82049176 AAGGAACATA
* *
82049186 TCCTATCTTCCTATATTAGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATATTGGTGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATACTGGTGG
* *
82049251 CGAAGTAGATCACAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGATAGCA
66 CGAAGTAGATCGCAGAAAACAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGATAGCA
* * * *
82049316 GGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGACGACGCAGATCTTGTCTTCCCATACTGGT
131 AGTCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATACTGGT
82049381 GGCGAAGTAGATCGCAGAAAACAGATCTTATCTTCATGTATTGGCGTGAAGTAGATCGAAGATAG
196 GGCGAAGTAGATCGCAGAAAACAGATCTTATCTTCATGTATTGGCGTGAAGTAGATCGAAGATAG
82049446 CAGG
261 CAGG
* *
82049450 T-CTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCCTACTGATGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATACTGGTGG
*
82049514 CGAAGTAGATCGCAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCA
66 CGAAGTAGATCGCAGAAAACAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGATAGCA
*
82049579 AGTCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATACTGAT
131 AGTCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATACTGGT
*
82049644 GGCGAAGTAGATCGCAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAG
196 GGCGAAGTAGATCGCAGAAAACAGATCTTATCTTCATGTATTGGCGTGAAGTAGATCGAAGATAG
82049709 CAGG
261 CAGG
* * *
82049713 TCCTATCTTTCTATATTGGTAGGAAGTGGATCGAAGACGCAGATCTTGTCTTCCCATACTGGTGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATACTGGTGG
* *
82049778 CGAAGTAGATCGCAGAAAACAGATCTTGTCTTCATGTATTGGCATGAAGTAAATCGAAGGTAGC-
66 CGAAGTAGATCGCAGAAAACAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGATAGCA
* * *
82049842 AGATCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATACAGATCTTGTCTTCCCATACTGG
131 AG-TCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATACTGG
* * *
82049907 TGGTGAAGTAGATCGAAGAAAGCAGATC
195 TGGCGAAGTAGATCGCAGAAAACAGATC
82049935 GACGATGGCG
Statistics
Matches: 455, Mismatches: 28, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
263 252 0.55
264 203 0.45
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.29
Consensus pattern (264 bp):
TCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATACTGGTGG
CGAAGTAGATCGCAGAAAACAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGATAGCA
AGTCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATACTGGT
GGCGAAGTAGATCGCAGAAAACAGATCTTATCTTCATGTATTGGCGTGAAGTAGATCGAAGATAG
CAGG
Found at i:82049914 original size:88 final size:89
Alignment explanation
Indices: 82049191--82049934 Score: 500
Period size: 88 Copynumber: 8.5 Consensus size: 89
82049181 ACATATCCTA
* * * * * * *
82049191 TCTTCCTATATTAGTAG-GAAGTGGATCAAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGA
1 TCTTCCTATATTGGTGGTGAAGTAGATCGAAGATAGCAGATCTTATCTTCCTATATTGGTAGCGA
*
82049254 AGTAGAT-CACAGAAAGCAGATCTTG
66 AGTAGATCCA-AGATA-CAGATCTTG
* * ** * *
82049279 TCTTCATGTATTGG-CATGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGGTAG-GA
1 TCTTCCTATATTGGTGGTGAAGTAGATCGAAGATAGCAGATCTTATCTTCCTATATTGGTAGCGA
* * * **
82049342 AGTGGATCGACGACGCAGATCTTG
66 AGTAGATCCAAGATACAGATCTTG
* * * * * * * * * *
82049366 TCTTCCCATACTGGTGGCGAAGTAGATCGCAGAAAACAGATCTTATCTTCATGTATTGG-CGTGA
1 TCTTCCTATATTGGTGGTGAAGTAGATCGAAGATAGCAGATCTTATCTTCCTATATTGGTAGCGA
* * *
82049430 AGTAGATCGAAGATAGCAGGTC-TA
66 AGTAGATCCAAGATA-CAGATCTTG
* * * * ** * * *
82049454 TCTTCCTATATTGGTAG-GAAGTGGATCAAAGAT-GCAGATCTTGTCTTCCCCTACTGATGGCGA
1 TCTTCCTATATTGGTGGTGAAGTAGATCGAAGATAGCAGATCTTATCTTCCTATATTGGTAGCGA
*
82049517 AGTAGATCGC-AGAAAACAGATCTTG
66 AGTAGATC-CAAG-ATACAGATCTTG
* * * *
82049542 TCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCA-AGTCCTATCTTCCTATATTGGTAG-G
1 TCTTCCTATATTGGTGGTGAAGTAGATCGAAGATAGCAGA-TCTTATCTTCCTATATTGGTAGCG
* * *
82049604 AAGTGGATCAAAGATGCAGATCTTG
65 AAGTAGATCCAAGATACAGATCTTG
* * * * * * * * * * * *
82049629 TCTTCCCATACTGATGGCGAAGTAGATCGCAGAAAACAGATCTTGTCTTCATGTATTGG-CGTGA
1 TCTTCCTATATTGGTGGTGAAGTAGATCGAAGATAGCAGATCTTATCTTCCTATATTGGTAGCGA
* * * *
82049693 AGTAGATCGAAGATAGCAGGTCCTA
66 AGTAGATCCAAGATA-CAGATCTTG
* * * * * * * *
82049718 TCTTTCTATATTGGTAG-GAAGTGGATCGAAGA-CGCAGATCTTGTCTTCCCATACTGGTGGCGA
1 TCTTCCTATATTGGTGGTGAAGTAGATCGAAGATAGCAGATCTTATCTTCCTATATTGGTAGCGA
*
82049781 AGTAGATCGC-AGAAAACAGATCTTG
66 AGTAGATC-CAAG-ATACAGATCTTG
* * ** * * * *
82049806 TCTTCATGTATTGG-CATGAAGTAAATCGAAGGTAGCAGATCCTATCTTCCTATATTGATAG-GA
1 TCTTCCTATATTGGTGGTGAAGTAGATCGAAGATAGCAGATCTTATCTTCCTATATTGGTAGCGA
*
82049869 AGTGGATCCAAGATACAGATCTTG
66 AGTAGATCCAAGATACAGATCTTG
* * *
82049893 TCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAGCAGATC
1 TCTTCCTATATTGGTGGTGAAGTAGATCGAAGATAGCAGATC
82049935 GACGATGGCG
Statistics
Matches: 490, Mismatches: 141, Indels: 50
0.72 0.21 0.07
Matches are distributed among these distances:
86 17 0.03
87 112 0.23
88 273 0.56
89 88 0.18
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.29
Consensus pattern (89 bp):
TCTTCCTATATTGGTGGTGAAGTAGATCGAAGATAGCAGATCTTATCTTCCTATATTGGTAGCGA
AGTAGATCCAAGATACAGATCTTG
Found at i:82062739 original size:16 final size:16
Alignment explanation
Indices: 82062710--82062749 Score: 71
Period size: 16 Copynumber: 2.4 Consensus size: 16
82062700 TTTTATTTAT
82062710 TTATTTATTTATTATTA
1 TTATTT-TTTATTATTA
82062727 TTATTTTTTATTATTA
1 TTATTTTTTATTATTA
82062743 TTATTTT
1 TTATTTT
82062750 CATTATTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 17 0.74
17 6 0.26
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (16 bp):
TTATTTTTTATTATTA
Found at i:82062746 original size:25 final size:24
Alignment explanation
Indices: 82062702--82062758 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 24
82062692 TGGCCTACTT
82062702 TTATTTATTTATTTATTTATTATT-A
1 TTATTT-TTTATTTATTTATT-TTCA
82062727 TTATTTTTTA-TTATTATTATTTTCA
1 TTATTTTTTATTTA-T-TTATTTTCA
82062752 TTATTTT
1 TTATTTT
82062759 CATTAAATTC
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
23 3 0.10
24 7 0.24
25 19 0.66
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.74
Consensus pattern (24 bp):
TTATTTTTTATTTATTTATTTTCA
Found at i:82062757 original size:9 final size:8
Alignment explanation
Indices: 82062713--82062763 Score: 50
Period size: 9 Copynumber: 5.9 Consensus size: 8
82062703 TATTTATTTA
82062713 TTTATTTAT
1 TTTA-TTAT
82062722 TATTATTAT
1 T-TTATTAT
82062731 TTT-TTAT
1 TTTATTAT
82062738 TATTATTAT
1 T-TTATTAT
82062747 TTTCATTAT
1 TTT-ATTAT
82062756 TTTCATTA
1 TTT-ATTA
82062764 AATTCCGGCA
Statistics
Matches: 38, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
7 5 0.13
8 6 0.16
9 24 0.63
10 3 0.08
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.71
Consensus pattern (8 bp):
TTTATTAT
Found at i:82063404 original size:22 final size:23
Alignment explanation
Indices: 82063390--82063439 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
82063380 TATTCACCAA
82063390 ATAAATAATTATTA-TCATACAAT
1 ATAAATAATT-TTATTCATACAAT
* *
82063413 ATAAATAATTTTATTTATATAAT
1 ATAAATAATTTTATTCATACAAT
82063436 ATAA
1 ATAA
82063440 GTTACGAATG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 3 0.12
23 21 0.88
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (23 bp):
ATAAATAATTTTATTCATACAAT
Found at i:82065117 original size:16 final size:17
Alignment explanation
Indices: 82065096--82065129 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
82065086 TTATAAAAAT
*
82065096 ATTAAAA-AATTTTAAA
1 ATTAAAATAATTATAAA
82065112 ATTAAAATAATTATAAA
1 ATTAAAATAATTATAAA
82065129 A
1 A
82065130 AAATAGTATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
ATTAAAATAATTATAAA
Found at i:82065130 original size:28 final size:28
Alignment explanation
Indices: 82065078--82065133 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
82065068 TAACAAATAA
*
82065078 TTTAAAATTTATAAAAATATTAAAAAAT
1 TTTAAAATTTATAAAAATATAAAAAAAT
82065106 TTTAAAA-TTA-AAATAATTATAAAAAAAT
1 TTTAAAATTTATAAA-AA-TATAAAAAAAT
82065134 AGTATGAAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
26 3 0.12
27 5 0.20
28 17 0.68
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (28 bp):
TTTAAAATTTATAAAAATATAAAAAAAT
Found at i:82068859 original size:2 final size:2
Alignment explanation
Indices: 82068854--82068886 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
82068844 TGTATATATA
82068854 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T- TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
82068887 GGTTTCAATG
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:82070091 original size:30 final size:29
Alignment explanation
Indices: 82070035--82070092 Score: 71
Period size: 30 Copynumber: 2.0 Consensus size: 29
82070025 AAAATTGTAT
*
82070035 TTTAGTCTTCTTAAAAGGAAAAAAAATTG
1 TTTAGTCTTCTTAAAAAGAAAAAAAATTG
* * *
82070064 TTTAGTTCTTTTTAAAAATAAATAAAATT
1 TTTAG-TCTTCTTAAAAAGAAAAAAAATT
82070093 ATAAATTAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.45, C:0.05, G:0.09, T:0.41
Consensus pattern (29 bp):
TTTAGTCTTCTTAAAAAGAAAAAAAATTG
Found at i:82073247 original size:38 final size:38
Alignment explanation
Indices: 82073196--82073272 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
82073186 CCCACATGAT
82073196 ATAGAAATAAGACTGGCAACCATAATTTTATTTTATTC
1 ATAGAAATAAGACTGGCAACCATAATTTTATTTTATTC
82073234 ATAGAAATAAGACTGGCAACCATAATTTTATTTTATTC
1 ATAGAAATAAGACTGGCAACCATAATTTTATTTTATTC
82073272 A
1 A
82073273 ATCATTGACA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.40, C:0.13, G:0.10, T:0.36
Consensus pattern (38 bp):
ATAGAAATAAGACTGGCAACCATAATTTTATTTTATTC
Found at i:82075391 original size:25 final size:25
Alignment explanation
Indices: 82075362--82075413 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
82075352 ACTTTATTTA
82075362 AATATAAA-TTCGATATTCAAAACTC
1 AATATAAATTTCGA-ATTCAAAACTC
* *
82075387 AATATAAATTTTGAATTCTAAACTC
1 AATATAAATTTCGAATTCAAAACTC
82075412 AA
1 AA
82075414 ACTACTACCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 20 0.83
26 4 0.17
ACGTcount: A:0.48, C:0.13, G:0.04, T:0.35
Consensus pattern (25 bp):
AATATAAATTTCGAATTCAAAACTC
Found at i:82078339 original size:22 final size:22
Alignment explanation
Indices: 82078314--82078381 Score: 68
Period size: 24 Copynumber: 3.0 Consensus size: 22
82078304 TCATAATTTG
82078314 TTGTTATGTATATATTTTAATA
1 TTGTTATGTATATATTTTAATA
*
82078336 TTGTTAGATATATATATTTTGTAATA
1 TTGTT--ATGTATATA-TTT-TAATA
*
82078362 TTG-TATGTATAT-TTCTAATA
1 TTGTTATGTATATATTTTAATA
82078382 CCATTATTTA
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
20 5 0.13
21 2 0.05
22 5 0.13
23 7 0.18
24 8 0.21
25 4 0.10
26 8 0.21
ACGTcount: A:0.32, C:0.01, G:0.10, T:0.56
Consensus pattern (22 bp):
TTGTTATGTATATATTTTAATA
Found at i:82078511 original size:21 final size:22
Alignment explanation
Indices: 82078467--82078511 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
82078457 AGTATAAATA
*
82078467 TATATACATAAATCATATAAGTT
1 TATATACAT-AATCATACAAGTT
*
82078490 TATATACAT-ATCATACATGTT
1 TATATACATAATCATACAAGTT
82078511 T
1 T
82078512 CCTTATTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 11 0.55
23 9 0.45
ACGTcount: A:0.42, C:0.11, G:0.04, T:0.42
Consensus pattern (22 bp):
TATATACATAATCATACAAGTT
Found at i:82078633 original size:21 final size:20
Alignment explanation
Indices: 82078605--82078645 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
82078595 TAGTATATGT
* *
82078605 TTTCTGTATGTATGTATATA
1 TTTCTGTATATATATATATA
82078625 TTTCTTGTATATATATATATA
1 TTTC-TGTATATATATATATA
82078646 GGTATATATC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.29, C:0.05, G:0.10, T:0.56
Consensus pattern (20 bp):
TTTCTGTATATATATATATA
Found at i:82082654 original size:12 final size:12
Alignment explanation
Indices: 82082637--82082677 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
82082627 TTCATGATTG
*
82082637 GCATTCATTTAT
1 GCATTCATTCAT
82082649 GCATTCATTCAT
1 GCATTCATTCAT
*
82082661 TCATTCATTCATT
1 GCATTCATTCA-T
82082674 GCAT
1 GCAT
82082678 ATCCCATAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
12 21 0.84
13 4 0.16
ACGTcount: A:0.24, C:0.22, G:0.07, T:0.46
Consensus pattern (12 bp):
GCATTCATTCAT
Found at i:82082657 original size:4 final size:4
Alignment explanation
Indices: 82082638--82082673 Score: 54
Period size: 4 Copynumber: 9.0 Consensus size: 4
82082628 TCATGATTGG
* *
82082638 CATT CATT TATG CATT CATT CATT CATT CATT CATT
1 CATT CATT CATT CATT CATT CATT CATT CATT CATT
82082674 GCATATCCCA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.25, C:0.22, G:0.03, T:0.50
Consensus pattern (4 bp):
CATT
Found at i:82091016 original size:54 final size:54
Alignment explanation
Indices: 82090928--82091036 Score: 173
Period size: 54 Copynumber: 2.0 Consensus size: 54
82090918 TATTTTGATG
**
82090928 TTTTAATTTCTATTTTTCAAAAATCAACTTATATTGCAAGAGGTGAGTTAAGCC
1 TTTTAATTTCTATTTTTCAAAAATCAACACATATTGCAAGAGGTGAGTTAAGCC
* * *
82090982 TTTTAATTTCTGTTTTTCAAAAATCAACACATATTGCGAGAGGTGAGTTGAGCC
1 TTTTAATTTCTATTTTTCAAAAATCAACACATATTGCAAGAGGTGAGTTAAGCC
82091036 T
1 T
82091037 CGAGACATAT
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.39
Consensus pattern (54 bp):
TTTTAATTTCTATTTTTCAAAAATCAACACATATTGCAAGAGGTGAGTTAAGCC
Found at i:82091330 original size:90 final size:90
Alignment explanation
Indices: 82091158--82091412 Score: 192
Period size: 102 Copynumber: 2.7 Consensus size: 90
82091148 AGGTCTGTTT
* ** * **
82091158 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGATACGCTGAGGTTTTTTCAAATTCTGTTT
1 TCAACTCATATTGAGAGAGGTGAGTTGAGCCTCAGGATACGCCAAGGTATTTTCAAATTCTGTAC
** *
82091223 TTTCAGTTTATATTTTTTTCAAAAA
66 TTTCAAATTATAGTTTTTTCAAAAA
* *
82091248 TCAACTCATATTGAGAGAGGTGAGTTGAGCC-CTGGGTCACATGCCAAGGTATTTTCAAATTCTG
1 TCAACTCATATTGAGAGAGGTGAGTTGAGCCTCAGGAT-AC--GCCAAGGTATTTTCAAATTCTG
* *
82091312 -ACTTTCAAATTCTGTTTTTAATTTCTACTTGTCAAAAA
63 TACTTTCAAA------TTAT-AGTT-T--TT-TCAAAAA
* * * **
82091350 TCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGGACACGCTGAGGTATTTT-AAATTTCTGT
1 TCAACTCATATTGAGAGAGGTGAGTTGAGCCTCAGGATACGCCAAGGTATTTTCAAA-TTCTGT
82091413 TTGTCAAAAA
Statistics
Matches: 130, Mismatches: 18, Indels: 23
0.76 0.11 0.13
Matches are distributed among these distances:
89 4 0.03
90 32 0.25
91 5 0.04
92 19 0.15
97 3 0.02
98 4 0.03
99 4 0.03
100 16 0.12
101 2 0.02
102 38 0.29
103 3 0.02
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (90 bp):
TCAACTCATATTGAGAGAGGTGAGTTGAGCCTCAGGATACGCCAAGGTATTTTCAAATTCTGTAC
TTTCAAATTATAGTTTTTTCAAAAA
Found at i:82091635 original size:166 final size:159
Alignment explanation
Indices: 82091312--82091693 Score: 401
Period size: 166 Copynumber: 2.3 Consensus size: 159
82091302 TCAAATTCTG
* * * * *
82091312 ACTTTCAAATTCTGTTTTTAATTTCTACTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG
1 ACTTTCAATTTCTATTTTTAATGTCTA-TT-TTAAAAATCAACTCATATTGCGAGAGGTGAGTTA
* * * *
82091377 AGTCTCAGGACACGCTGAGGTATTTTAAATTTCTGTTTGTCAAAAATCAACTCATATTGCAAGCG
64 AGCCTCAGGACACACTGAGGTATTTTAAATTGCTGTTTGTCAAAAATCAACTCATATTGCAAGAG
*
82091442 GTGAGTTGAGCCTTGGCTCACGTGTTGAGCC
129 GTGAGTTAAGCCTTGGCTCACGTGTTGAGCC
* * *
82091473 ACTTTCAATTTCTGTTTTTAATGTCTGTTTT-TAAATCAACTCATATTGCGAGAGGTGAGTTAAG
1 ACTTTCAATTTCTATTTTTAATGTCTATTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTAAG
* * *
82091537 CCTCGGGTCACACATCGAGGTATTTTCAAAATCTGCT-TTTAAGTTTC-AAAAGCTAACTCATAT
66 CCTCAGGACACAC-T-GAGGTATTTT--AAAT-TGCTGTTT--G--TCAAAAATC-AACTCATAT
* * * *
82091600 TGCGAGAGGTGAGTTAAGCTTTGGCTCATGTGTTGAGCT
121 TGCAAGAGGTGAGTTAAGCCTTGGCTCACGTGTTGAGCC
* * * * *
82091639 ATTTTTAATTTCTATTTTTACTTTCTATTTTAAAGAATCAATTCATATTGCGAGA
1 ACTTTCAATTTCTATTTTTAATGTCTATTTTAAA-AATCAACTCATATTGCGAGA
82091694 AATGGGTTGA
Statistics
Matches: 183, Mismatches: 26, Indels: 17
0.81 0.12 0.08
Matches are distributed among these distances:
158 40 0.22
159 2 0.01
160 12 0.07
161 24 0.13
162 7 0.04
163 3 0.02
164 1 0.01
165 5 0.03
166 69 0.38
167 1 0.01
168 19 0.10
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.38
Consensus pattern (159 bp):
ACTTTCAATTTCTATTTTTAATGTCTATTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTAAG
CCTCAGGACACACTGAGGTATTTTAAATTGCTGTTTGTCAAAAATCAACTCATATTGCAAGAGGT
GAGTTAAGCCTTGGCTCACGTGTTGAGCC
Found at i:82091655 original size:13 final size:13
Alignment explanation
Indices: 82091637--82091669 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
82091627 ATGTGTTGAG
82091637 CTATTTTTAATTT
1 CTATTTTTAATTT
*
82091650 CTATTTTTACTTT
1 CTATTTTTAATTT
82091663 CTATTTT
1 CTATTTT
82091670 AAAGAATCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.18, C:0.12, G:0.00, T:0.70
Consensus pattern (13 bp):
CTATTTTTAATTT
Found at i:82091658 original size:81 final size:81
Alignment explanation
Indices: 82091419--82091658 Score: 221
Period size: 85 Copynumber: 2.9 Consensus size: 81
82091409 CTGTTTGTCA
* * * * * *
82091419 AAAATCAACTCATATTGCAAGCGGTGAGTTGAGCCTTGGCTCACGTGTTGAGCCACTTTCAATTT
1 AAAAGCAACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCTCACGTGTTGAGCTATTTTCAATTT
*
82091484 CTGTTTTTAATGTCTGTTTT
66 CTGTTTTTAA----TGTTTC
* * * * *** * * **
82091504 TAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCGGGTCACACATCGAGGTATTTTCAAAAT
1 AAAAGCAACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCTCACGTGTTGAGCTATTTTCAATTT
*
82091569 CTGCTTTTAA-GTTTC
66 CTGTTTTTAATGTTTC
* * *
82091584 AAAAGCTAACTCATATTGCGAGAGGTGAGTTAAGCTTTGGCTCATGTGTTGAGCTATTTTTAATT
1 AAAAGC-AACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCTCACGTGTTGAGCTATTTTCAATT
*
82091649 TCTATTTTTA
65 TCTGTTTTTA
82091659 CTTTCTATTT
Statistics
Matches: 121, Mismatches: 33, Indels: 6
0.76 0.21 0.04
Matches are distributed among these distances:
80 8 0.07
81 54 0.45
85 59 0.49
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.38
Consensus pattern (81 bp):
AAAAGCAACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCTCACGTGTTGAGCTATTTTCAATTT
CTGTTTTTAATGTTTC
Found at i:82093696 original size:21 final size:22
Alignment explanation
Indices: 82093652--82093696 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
82093642 AGTATAAATA
*
82093652 TATATACATATATCATATAAGTT
1 TATATACA-ATATCATACAAGTT
*
82093675 TATATAC-ATATCATACATGTT
1 TATATACAATATCATACAAGTT
82093696 T
1 T
82093697 CCTTATTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 13 0.65
23 7 0.35
ACGTcount: A:0.40, C:0.11, G:0.04, T:0.44
Consensus pattern (22 bp):
TATATACAATATCATACAAGTT
Found at i:82097671 original size:31 final size:29
Alignment explanation
Indices: 82097600--82097672 Score: 87
Period size: 31 Copynumber: 2.4 Consensus size: 29
82097590 ATAAATATCA
*
82097600 AAATTATATAC-TAATTTTGGTTTAATGT
1 AAATTATATACATAATTTTGATTTAATGT
82097628 ATAATT-TGATACATAAATTTTGATTTAATGT
1 A-AATTAT-ATACAT-AATTTTGATTTAATGT
82097659 AAATATATATACAT
1 AAAT-TATATACAT
82097673 GAAACTTTAA
Statistics
Matches: 38, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
28 2 0.05
29 8 0.21
30 4 0.11
31 23 0.61
32 1 0.03
ACGTcount: A:0.41, C:0.04, G:0.08, T:0.47
Consensus pattern (29 bp):
AAATTATATACATAATTTTGATTTAATGT
Found at i:82098611 original size:21 final size:21
Alignment explanation
Indices: 82098570--82098613 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
82098560 ACTCAAAATA
*
82098570 TTATAATTTATATATATTTTT
1 TTATAATTTATATATAATTTT
*
82098591 TTATAAATTTAT-TCTAATTTT
1 TTAT-AATTTATATATAATTTT
82098612 TT
1 TT
82098614 TCACTCATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (21 bp):
TTATAATTTATATATAATTTT
Found at i:82109793 original size:58 final size:58
Alignment explanation
Indices: 82109716--82109827 Score: 174
Period size: 58 Copynumber: 1.9 Consensus size: 58
82109706 AAAAAGCTTA
82109716 AGCCCCAATATAGTAACAATTG-CCAAGTTTAGGGCCTAACTTGGACAAAAAAAATTCG
1 AGCCCCAATATAGTAACAATTGTCC-AGTTTAGGGCCTAACTTGGACAAAAAAAATTCG
* *
82109774 AGCCCCAATGTGAG-AACAATTGTCCAGTTTAGGGCCTAACTTGGACAGAAAAAA
1 AGCCCCAATAT-AGTAACAATTGTCCAGTTTAGGGCCTAACTTGGACAAAAAAAA
82109828 GTTCAGATCC
Statistics
Matches: 50, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
58 46 0.92
59 4 0.08
ACGTcount: A:0.38, C:0.21, G:0.20, T:0.21
Consensus pattern (58 bp):
AGCCCCAATATAGTAACAATTGTCCAGTTTAGGGCCTAACTTGGACAAAAAAAATTCG
Found at i:82110966 original size:32 final size:33
Alignment explanation
Indices: 82110908--82110978 Score: 85
Period size: 32 Copynumber: 2.2 Consensus size: 33
82110898 GGTTTCCGAA
*
82110908 AAAAATATCTATTTTTATTTGTTATTTTCATTTC
1 AAAAATATCTATTTTCATTTGTTATTTT-ATTTC
*
82110942 AAAAA-AT-TATTTTCATTT-TCTATTTTATTTT
1 AAAAATATCTATTTTCATTTGT-TATTTTATTTC
82110973 AAAAAT
1 AAAAAT
82110979 TAGAAATCAT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
31 10 0.30
32 16 0.48
33 2 0.06
34 5 0.15
ACGTcount: A:0.35, C:0.07, G:0.01, T:0.56
Consensus pattern (33 bp):
AAAAATATCTATTTTCATTTGTTATTTTATTTC
Found at i:82111012 original size:27 final size:27
Alignment explanation
Indices: 82110972--82111024 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
82110962 TATTTTATTT
* *
82110972 TAAAAATTAGAAATCATGTTCAATAAA
1 TAAAAATAAAAAATCATGTTCAATAAA
* *
82110999 TAAAAATAAAAAATTATTTTCAATAA
1 TAAAAATAAAAAATCATGTTCAATAA
82111025 TGAAAGTACG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.58, C:0.06, G:0.04, T:0.32
Consensus pattern (27 bp):
TAAAAATAAAAAATCATGTTCAATAAA
Found at i:82111871 original size:26 final size:26
Alignment explanation
Indices: 82111842--82111949 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
82111832 TGGTACAAAT
82111842 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
82111868 TGATAATGGATTAGGTAAATATTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
82111894 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
82111920 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
82111946 TGAT
1 TGAT
82111950 GGGCATTTCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.32, C:0.06, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:82115167 original size:17 final size:17
Alignment explanation
Indices: 82115145--82115178 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
82115135 GATTACATGT
82115145 TGTATA-TATAATAGAAG
1 TGTATATTAT-ATAGAAG
82115162 TGTATATTATATAGAAG
1 TGTATATTATATAGAAG
82115179 AAGAAAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 13 0.81
18 3 0.19
ACGTcount: A:0.44, C:0.00, G:0.18, T:0.38
Consensus pattern (17 bp):
TGTATATTATATAGAAG
Found at i:82116146 original size:29 final size:30
Alignment explanation
Indices: 82116104--82116161 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 30
82116094 TTAAATTTAT
* *
82116104 TTAATTCTTTTTAATAATATAAAGATTAAA
1 TTAATTCTATTTAATAATAAAAAGATTAAA
82116134 TTAA-TCTATTTAATAATAAAAAGATTAA
1 TTAATTCTATTTAATAATAAAAAGATTAA
82116162 TTTGATTCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 22 0.85
30 4 0.15
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.43
Consensus pattern (30 bp):
TTAATTCTATTTAATAATAAAAAGATTAAA
Found at i:82117219 original size:22 final size:22
Alignment explanation
Indices: 82117191--82117235 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
82117181 TAAAGCAAAG
*
82117191 CATTCAACTTCATAGAAAATTC
1 CATTCAACTTCATACAAAATTC
* *
82117213 CATTCAATTTCATACAAGATTC
1 CATTCAACTTCATACAAAATTC
82117235 C
1 C
82117236 TAACCCTAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.38, C:0.24, G:0.04, T:0.33
Consensus pattern (22 bp):
CATTCAACTTCATACAAAATTC
Found at i:82118223 original size:19 final size:19
Alignment explanation
Indices: 82118201--82118240 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
82118191 GAAATTATTT
82118201 TAAACTTCACAAATAAAGA
1 TAAACTTCACAAATAAAGA
82118220 TAAACTTCACAAATAAAGA
1 TAAACTTCACAAATAAAGA
82118239 TA
1 TA
82118241 GGGATTGACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.57, C:0.15, G:0.05, T:0.23
Consensus pattern (19 bp):
TAAACTTCACAAATAAAGA
Found at i:82119958 original size:36 final size:35
Alignment explanation
Indices: 82119908--82119982 Score: 98
Period size: 36 Copynumber: 2.1 Consensus size: 35
82119898 AGAATCAGTT
* * * *
82119908 GTTTTTGTTGTTGTTTCGCTATTATATTGTTATTA
1 GTTTTTGTTATTGTTTAGATATTATATAGTTATTA
82119943 GTTTGTTGTTATTGTTTAGATATTATATAGTTATTA
1 GTTT-TTGTTATTGTTTAGATATTATATAGTTATTA
82119979 -TTTT
1 GTTTT
82119983 ATTATTAATC
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
34 1 0.03
35 7 0.20
36 27 0.77
ACGTcount: A:0.19, C:0.03, G:0.16, T:0.63
Consensus pattern (35 bp):
GTTTTTGTTATTGTTTAGATATTATATAGTTATTA
Found at i:82129194 original size:24 final size:24
Alignment explanation
Indices: 82129144--82129194 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
82129134 TTAATTGGTA
**
82129144 TTTTCCATTGATTTATGGTTTTTT
1 TTTTCCATTGATTTATGGTTTGAT
* *
82129168 TTTTCGATTGCTTTATGGTTTGAT
1 TTTTCCATTGATTTATGGTTTGAT
82129192 TTT
1 TTT
82129195 GAGGAATCGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.12, C:0.08, G:0.16, T:0.65
Consensus pattern (24 bp):
TTTTCCATTGATTTATGGTTTGAT
Found at i:82130965 original size:20 final size:20
Alignment explanation
Indices: 82130922--82130965 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
82130912 ATAGAAGGAT
* *
82130922 TAAATTTCTAAAAATTAAAT
1 TAAATTTCTAAAAATAAAAG
82130942 TAAATTTCTAAAAATAAAAG
1 TAAATTTCTAAAAATAAAAG
82130962 TAAA
1 TAAA
82130966 GATACTAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.59, C:0.05, G:0.02, T:0.34
Consensus pattern (20 bp):
TAAATTTCTAAAAATAAAAG
Found at i:82134964 original size:21 final size:21
Alignment explanation
Indices: 82134938--82134978 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
82134928 ATCTGCTCAA
* *
82134938 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
82134959 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
82134979 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:82146018 original size:8 final size:8
Alignment explanation
Indices: 82146007--82146035 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
82145997 AATAAATAAA
82146007 AAAATTAT
1 AAAATTAT
82146015 AAAATTAT
1 AAAATTAT
82146023 AAAATTAT
1 AAAATTAT
82146031 AAAAT
1 AAAAT
82146036 AATATAATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (8 bp):
AAAATTAT
Found at i:82146019 original size:16 final size:16
Alignment explanation
Indices: 82146000--82146037 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
82145990 AATTTTCAAT
82146000 AAATAAAAAAATTATA
1 AAATAAAAAAATTATA
* *
82146016 AAATTATAAAATTATA
1 AAATAAAAAAATTATA
82146032 AAATAA
1 AAATAA
82146038 TATAATATAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (16 bp):
AAATAAAAAAATTATA
Found at i:82151946 original size:378 final size:377
Alignment explanation
Indices: 82151246--82151968 Score: 981
Period size: 378 Copynumber: 1.9 Consensus size: 377
82151236 CATCATCTTC
* * *
82151246 ACAAAGCTTCTCCAAATGATGACTCGTTTCAATTTGTCCATTAAAGTGTTGACTTTTTTCTCGAA
1 ACAAAGCTTCTCCAAATGAAGACTCGGTTCAATTTGTCCATTAAAGTGTTGACTTTCTTCTCGAA
*
82151311 CTTCATTAATCGATTCCCTTCTGCCTTCCATTTGTTCTTCAAACCCTTCCGTTCTTCCATCACAA
66 CCTCATTAATCGATTCCCTTCTGCCTTCCATTTGTTCTTCAAACCCTTCCGTTCTTCCATCACAA
* *
82151376 GCTCTATCCTGGCCTTTCTCTTCAACACTTTGTCTTTCAACTTCACACCGAGTTTCAGATTCTGC
131 GCTCTATCCTGGCCATTCACTTCAACACTTTGTCTTTCAACTTCACACCGAGTTTCAGATTC-GC
* ** ** * ** * *
82151441 AGCTTGACCACTGTTTACCCCGTTGCAGCCATCAAAAGCCTTGACTTCACTCCACTTCCCTTGGA
195 AGCTCGACCACCATTTACCCCACTCCAGCCATCAAAAGCCTCAACTTCACTCCACTTCCCTCGAA
* * * * * * *
82151506 CTAAAGTTTGATCTTCCTTCTCAACACTATTTGAAACGTTCAACCTATGACTCATTTCCTCCTCA
260 CCAAAGCTCGATCTTCCTTCTCAACACAATTTGAAACGTTCAACCCAAGACTCATCTCCTCCTCA
82151571 TT-CTGCAAATCACCATCATCTTCATTATTAACGCATACCATCTTTCCATTCCT
325 TTCCTG-AAATCACCATCATCTTCATTATTAACGCATACCATCTTTCCATTCCT
* *
82151624 ACAAAGCTTCTCCAAATGAAGACTCGGTTCGATTTGTTCATTAAAGTGTTGACTTTCTTCTCGAA
1 ACAAAGCTTCTCCAAATGAAGACTCGGTTCAATTTGTCCATTAAAGTGTTGACTTTCTTCTCGAA
*
82151689 CCTCATTAA-CGGATTCCCTTCTGCCTTCCATTTGTTCTTCAAACCCTTCCGTTCTTTCATCACA
66 CCTCATTAATC-GATTCCCTTCTGCCTTCCATTTGTTCTTCAAACCCTTCCGTTCTTCCATCACA
* * *
82151753 AGCTAC-ATTCTGGCCATTCACTTCAACACTTTGTCTTTCAACTTCACATCG-TTTCTCAGATTC
130 AGCT-CTATCCTGGCCATTCACTTCAACACTTTGTCTTTCAACTTCACACCGAGTT-TCAGATTC
* * * * *
82151816 -CAGAACTCGATCACCATTTACTCCACTCCATCCATTGAAAA-CCTCAACTTCACTCCCCTTCCC
193 GCAG--CTCGACCACCATTTACCCCACTCCAGCCA-TCAAAAGCCTCAACTTCACTCCACTTCCC
* * * *
82151879 TCGAACCAAGGCTCGATCTTCCTTCTCATCACAATTTGAAACTTTCAACCCAAGACTCGTCTCCT
255 TCGAACCAAAGCTCGATCTTCCTTCTCAACACAATTTGAAACGTTCAACCCAAGACTCATCTCCT
*
82151944 CCTCGTTCCTGAAATCACCATCATC
320 CCTCATTCCTGAAATCACCATCATC
82151969 CATACAAACC
Statistics
Matches: 299, Mismatches: 39, Indels: 14
0.85 0.11 0.04
Matches are distributed among these distances:
376 3 0.01
377 3 0.01
378 284 0.95
379 9 0.03
ACGTcount: A:0.23, C:0.32, G:0.10, T:0.35
Consensus pattern (377 bp):
ACAAAGCTTCTCCAAATGAAGACTCGGTTCAATTTGTCCATTAAAGTGTTGACTTTCTTCTCGAA
CCTCATTAATCGATTCCCTTCTGCCTTCCATTTGTTCTTCAAACCCTTCCGTTCTTCCATCACAA
GCTCTATCCTGGCCATTCACTTCAACACTTTGTCTTTCAACTTCACACCGAGTTTCAGATTCGCA
GCTCGACCACCATTTACCCCACTCCAGCCATCAAAAGCCTCAACTTCACTCCACTTCCCTCGAAC
CAAAGCTCGATCTTCCTTCTCAACACAATTTGAAACGTTCAACCCAAGACTCATCTCCTCCTCAT
TCCTGAAATCACCATCATCTTCATTATTAACGCATACCATCTTTCCATTCCT
Found at i:82153790 original size:76 final size:76
Alignment explanation
Indices: 82153664--82153815 Score: 304
Period size: 76 Copynumber: 2.0 Consensus size: 76
82153654 TAATACGTAC
82153664 TTGAATCCATTGATACGTTGAATAATCTATCACACTAACTCAACAAGAACAAAAGGAAACTAGAT
1 TTGAATCCATTGATACGTTGAATAATCTATCACACTAACTCAACAAGAACAAAAGGAAACTAGAT
82153729 ATTGATGCATA
66 ATTGATGCATA
82153740 TTGAATCCATTGATACGTTGAATAATCTATCACACTAACTCAACAAGAACAAAAGGAAACTAGAT
1 TTGAATCCATTGATACGTTGAATAATCTATCACACTAACTCAACAAGAACAAAAGGAAACTAGAT
82153805 ATTGATGCATA
66 ATTGATGCATA
82153816 CTTAAATGTC
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
76 76 1.00
ACGTcount: A:0.43, C:0.17, G:0.13, T:0.26
Consensus pattern (76 bp):
TTGAATCCATTGATACGTTGAATAATCTATCACACTAACTCAACAAGAACAAAAGGAAACTAGAT
ATTGATGCATA
Found at i:82158285 original size:23 final size:23
Alignment explanation
Indices: 82158252--82158303 Score: 95
Period size: 23 Copynumber: 2.2 Consensus size: 23
82158242 ATTTTAACTT
82158252 TTTATATGTAAAGAATATTTTATA
1 TTTA-ATGTAAAGAATATTTTATA
82158276 TTTAATGTAAAGAATATTTTATA
1 TTTAATGTAAAGAATATTTTATA
82158299 TTTAA
1 TTTAA
82158304 ATTAATAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
23 24 0.86
24 4 0.14
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (23 bp):
TTTAATGTAAAGAATATTTTATA
Found at i:82160982 original size:28 final size:28
Alignment explanation
Indices: 82160943--82161003 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
82160933 TCAACTTTCA
*
82160943 AAATT-TAATATTATTTAATATTTATGT
1 AAATTATAATATTAATTAATATTTATGT
*
82160970 AAATTATAATATTAATTAATATTTCTGT
1 AAATTATAATATTAATTAATATTTATGT
82160998 AAATTA
1 AAATTA
82161004 AATTTACTAG
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 5 0.16
28 26 0.84
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.51
Consensus pattern (28 bp):
AAATTATAATATTAATTAATATTTATGT
Found at i:82163367 original size:36 final size:36
Alignment explanation
Indices: 82163327--82163416 Score: 126
Period size: 36 Copynumber: 2.5 Consensus size: 36
82163317 TGAAAACTTT
**
82163327 GGACAGTTTGTTCCAGTCAGCAGTGCTGAGAGCTTC
1 GGACAGTTTGTTCCAGTCAGCAGTGCCAAGAGCTTC
* *
82163363 GGACAGTTTGTTCCAGTCAGCGGTGCCAATAGCTTC
1 GGACAGTTTGTTCCAGTCAGCAGTGCCAAGAGCTTC
* *
82163399 GGATAGTTTGCTCCAGTC
1 GGACAGTTTGTTCCAGTC
82163417 CGAGGGGTCG
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 48 1.00
ACGTcount: A:0.19, C:0.23, G:0.29, T:0.29
Consensus pattern (36 bp):
GGACAGTTTGTTCCAGTCAGCAGTGCCAAGAGCTTC
Found at i:82164629 original size:75 final size:76
Alignment explanation
Indices: 82164505--82164655 Score: 295
Period size: 75 Copynumber: 2.0 Consensus size: 76
82164495 TCCTATTCAC
82164505 ACCAAGGAATAGATAAAAAAAATAAATCAGTAGGAAGCTTTTTCTACTTCTTAAAAGCGCTTCGA
1 ACCAAGGAATAGATAAAAAAAATAAATCAGTAGGAAGCTTTTTCTACTTCTTAAAAGCGCTTCGA
82164570 GAAACAAAATA
66 GAAACAAAATA
82164581 ACCAAGGAATAGATAAAAAAAAT-AATCAGTAGGAAGCTTTTTCTACTTCTTAAAAGCGCTTCGA
1 ACCAAGGAATAGATAAAAAAAATAAATCAGTAGGAAGCTTTTTCTACTTCTTAAAAGCGCTTCGA
82164645 GAAACAAAATA
66 GAAACAAAATA
82164656 GCTTATAGCT
Statistics
Matches: 75, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
75 52 0.69
76 23 0.31
ACGTcount: A:0.47, C:0.15, G:0.15, T:0.24
Consensus pattern (76 bp):
ACCAAGGAATAGATAAAAAAAATAAATCAGTAGGAAGCTTTTTCTACTTCTTAAAAGCGCTTCGA
GAAACAAAATA
Found at i:82168525 original size:20 final size:20
Alignment explanation
Indices: 82168492--82168533 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
82168482 TTTTTTTATT
82168492 ATTTTTTAAGAATTTTAATAC
1 ATTTTTTAAGAATTTTAA-AC
*
82168513 ATTTTTTTA-AATTTTAAAC
1 ATTTTTTAAGAATTTTAAAC
82168532 AT
1 AT
82168534 CTTAAATAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 4 0.20
20 8 0.40
21 8 0.40
ACGTcount: A:0.38, C:0.05, G:0.02, T:0.55
Consensus pattern (20 bp):
ATTTTTTAAGAATTTTAAAC
Found at i:82172027 original size:69 final size:69
Alignment explanation
Indices: 82171916--82172050 Score: 270
Period size: 69 Copynumber: 2.0 Consensus size: 69
82171906 ATAACACACA
82171916 TTAGATTCAAGTCAATTTGATGGTCAATGTTAGAAATTAGGGAAGAAAGTTGTTTGGATTTTGGT
1 TTAGATTCAAGTCAATTTGATGGTCAATGTTAGAAATTAGGGAAGAAAGTTGTTTGGATTTTGGT
82171981 TACC
66 TACC
82171985 TTAGATTCAAGTCAATTTGATGGTCAATGTTAGAAATTAGGGAAGAAAGTTGTTTGGATTTTGGT
1 TTAGATTCAAGTCAATTTGATGGTCAATGTTAGAAATTAGGGAAGAAAGTTGTTTGGATTTTGGT
82172050 T
66 T
82172051 CGTAGATTAA
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 66 1.00
ACGTcount: A:0.30, C:0.06, G:0.25, T:0.39
Consensus pattern (69 bp):
TTAGATTCAAGTCAATTTGATGGTCAATGTTAGAAATTAGGGAAGAAAGTTGTTTGGATTTTGGT
TACC
Done.