Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 26 of 255
Found at i:7075346 original size:93 final size:93
Alignment explanation
Indices: 7075217--7075388 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
7075207 CGCCCATAAG
* * * *
7075217 CGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTTGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
7075282 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
7075310 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
7075375 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
7075389 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:7075385 original size:46 final size:46
Alignment explanation
Indices: 7075210--7075385 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
7075200 TGTAACCCGC
* * * *
7075210 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
7075256 CCATAAGTGAACTTGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
7075306 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
7075349 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
7075386 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:7075404 original size:46 final size:46
Alignment explanation
Indices: 7075259--7075397 Score: 135
Period size: 47 Copynumber: 3.0 Consensus size: 46
7075249 TTCGCATCCA
*
7075259 TAAGTGAACTTGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATC
* * * * *
7075307 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA--
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATC
7075352 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
7075398 CTAGTGACAT
Statistics
Matches: 74, Mismatches: 10, Indels: 16
0.74 0.10 0.16
Matches are distributed among these distances:
44 8 0.11
45 2 0.03
46 28 0.38
47 29 0.39
48 2 0.03
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
Found at i:7079978 original size:11 final size:12
Alignment explanation
Indices: 7079954--7079986 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
7079944 ATTTATAAAA
7079954 TAGAAAAATATT
1 TAGAAAAATATT
*
7079966 TATAAAAAT-TT
1 TAGAAAAATATT
7079977 TAGAAAAATA
1 TAGAAAAATA
7079987 AAATCTTGAG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
11 10 0.56
12 8 0.44
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (12 bp):
TAGAAAAATATT
Found at i:7080735 original size:16 final size:16
Alignment explanation
Indices: 7080714--7080745 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
7080704 ATTTCACACC
*
7080714 CTAATACAGCTCATTG
1 CTAATACAACTCATTG
7080730 CTAATACAACTCATTG
1 CTAATACAACTCATTG
7080746 ACTTCTATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.25, G:0.09, T:0.31
Consensus pattern (16 bp):
CTAATACAACTCATTG
Found at i:7081393 original size:14 final size:14
Alignment explanation
Indices: 7081363--7081392 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
7081353 GGCTGACAGC
7081363 AAAGAAAAAAGTCA
1 AAAGAAAAAAGTCA
7081377 AAAG-AAAAAGTCA
1 AAAGAAAAAAGTCA
7081390 AAA
1 AAA
7081393 AAGATGGATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.75
14 4 0.25
ACGTcount: A:0.73, C:0.07, G:0.13, T:0.07
Consensus pattern (14 bp):
AAAGAAAAAAGTCA
Found at i:7081937 original size:136 final size:135
Alignment explanation
Indices: 7081688--7081963 Score: 464
Period size: 136 Copynumber: 2.0 Consensus size: 135
7081678 CTGTTATAGC
* * *
7081688 AGCTAGCTTTGTAAGATAGTCAAGGTAATAAGATCTAAAGCAATGGTCTTCTCTAGTGATTATCA
1 AGCTAGCTTTGTAAGATAGTCAAGGTAATAAGATCTAAAGCAATGATCTTCCCTACTGATTATCA
7081753 ACAGTTTTAGATTTTAAGACAGGATGATCAGCAGACATAATCTACTATAGATACAAATTAATACG
66 ACAGTTTTAGATTTTAAGACAGGATGATCAGCAGACATAATCTACTATAGATACAAATTAATACG
7081818 AAAAG
131 AAAAG
* *
7081823 AGCTATGCTTTGTAAGATAGTCAAGGTAATAAGATCTGAAGCAATGAT-TTCCCCTACTGATTTT
1 AGCTA-GCTTTGTAAGATAGTCAAGGTAATAAGATCTAAAGCAATGATCTT-CCCTACTGATTAT
*
7081887 CAACAGTTTTAGATTTTAAGACAGGATGATCAGCAGACATAGTCTACTATAGATACAAATTAATA
64 CAACAGTTTTAGATTTTAAGACAGGATGATCAGCAGACATAATCTACTATAGATACAAATTAATA
*
7081952 CGCAAAG
129 CGAAAAG
7081959 AGCTA
1 AGCTA
7081964 CCCAGAAGCA
Statistics
Matches: 132, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
135 7 0.05
136 125 0.95
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.30
Consensus pattern (135 bp):
AGCTAGCTTTGTAAGATAGTCAAGGTAATAAGATCTAAAGCAATGATCTTCCCTACTGATTATCA
ACAGTTTTAGATTTTAAGACAGGATGATCAGCAGACATAATCTACTATAGATACAAATTAATACG
AAAAG
Found at i:7095231 original size:19 final size:19
Alignment explanation
Indices: 7095207--7095251 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
7095197 TTTATCTAAA
7095207 AAAATAA-AAATATTACATT
1 AAAATAATAAA-ATTACATT
*
7095226 AAAATAATAAAATTATATT
1 AAAATAATAAAATTACATT
7095245 -AAATAAT
1 AAAATAAT
7095252 GGGTTGTATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 7 0.29
19 14 0.58
20 3 0.12
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.33
Consensus pattern (19 bp):
AAAATAATAAAATTACATT
Found at i:7095323 original size:33 final size:33
Alignment explanation
Indices: 7095276--7095344 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 33
7095266 TTAATAATTC
7095276 ATAACAAAAGAGTAAATTATAATAGATAAGAGA
1 ATAACAAAAGAGTAAATTATAATAGATAAGAGA
* *
7095309 ATAACAAAATAGTAAATTATAATAGGTAAGAGA
1 ATAACAAAAGAGTAAATTATAATAGATAAGAGA
7095342 ATA
1 ATA
7095345 GTCATAAATG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.59, C:0.03, G:0.14, T:0.23
Consensus pattern (33 bp):
ATAACAAAAGAGTAAATTATAATAGATAAGAGA
Found at i:7098228 original size:3 final size:3
Alignment explanation
Indices: 7098220--7098268 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
7098210 AAAGAAAATA
7098220 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
7098268 A
1 A
7098269 GGGGCAACAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:7101043 original size:174 final size:173
Alignment explanation
Indices: 7100794--7101183 Score: 641
Period size: 174 Copynumber: 2.3 Consensus size: 173
7100784 TTACTACTCA
* * *
7100794 CTAATATAAATAATC--AA-AGAA-AAAT-A-AATAATAATAATAATAATAGGGCCACCAAAAAT
1 CTAATATAAATAATCAAAATACAATAAATAATAATAATAATAATAATAAAAGGGCCAACAAAAAT
* *
7100853 GTGCAAATAAGAAAATGAGTAATAAAAATTTTAGAATAAAAAAGGTAAAGAAATAATACCTAGGT
66 GTGCAAATAAGAAAATGAGTAATAAAAATTTTAAAATAAAAAAGGTAAAGAAATAATACATAGGT
7100918 AAATAAACCAATAAATCAATCAATCCATAATTACTATTCTAATT
131 AAATAAACCAATAAATCAATCAATCCATAATTACTATTCTAA-T
7100962 CTAATATAAATAATCAAAATACAATAAATAATAATAATAATAATAATAACAAGGG-CAACAAAAA
1 CTAATATAAATAATCAAAATACAATAAATAATAATAATAATAATAATAA-AAGGGCCAACAAAAA
7101026 TGTGCAAATAAGAAAATGAGTAATAAAAATTTTAAAATAAAAAAGGTAAAGAAATAATACATAGG
65 TGTGCAAATAAGAAAATGAGTAATAAAAATTTTAAAATAAAAAAGGTAAAGAAATAATACATAGG
*
7101091 TAAATAAACCGATAAATCAATCAATCCATAATTACTATTCTAAT
130 TAAATAAACCAATAAATCAATCAATCCATAATTACTATTCTAAT
* *
7101135 ATAATATAAATAATCAAAATACAATAAATAATAATAACAATAATAATAA
1 CTAATATAAATAATCAAAATACAATAAATAATAATAATAATAATAATAA
7101184 TAATCAAATG
Statistics
Matches: 207, Mismatches: 8, Indels: 9
0.92 0.04 0.04
Matches are distributed among these distances:
168 15 0.07
170 2 0.01
171 3 0.01
172 4 0.02
173 49 0.24
174 130 0.63
175 4 0.02
ACGTcount: A:0.58, C:0.09, G:0.07, T:0.25
Consensus pattern (173 bp):
CTAATATAAATAATCAAAATACAATAAATAATAATAATAATAATAATAAAAGGGCCAACAAAAAT
GTGCAAATAAGAAAATGAGTAATAAAAATTTTAAAATAAAAAAGGTAAAGAAATAATACATAGGT
AAATAAACCAATAAATCAATCAATCCATAATTACTATTCTAAT
Found at i:7104042 original size:39 final size:36
Alignment explanation
Indices: 7103999--7104070 Score: 90
Period size: 36 Copynumber: 1.9 Consensus size: 36
7103989 CTCAATTTTT
*
7103999 TTTCAAATTTATGTCAACTATTTATATTATTGAATTAAA
1 TTTCAAATTT-TGT--ACTATTTATATTATTAAATTAAA
* *
7104038 TTTCATATTTTGTACTATTTATTTTATTAAATT
1 TTTCAAATTTTGTACTATTTATATTATTAAATT
7104071 GTTTAATCAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
36 18 0.60
38 3 0.10
39 9 0.30
ACGTcount: A:0.33, C:0.07, G:0.04, T:0.56
Consensus pattern (36 bp):
TTTCAAATTTTGTACTATTTATATTATTAAATTAAA
Found at i:7104239 original size:60 final size:60
Alignment explanation
Indices: 7104148--7104333 Score: 331
Period size: 60 Copynumber: 3.1 Consensus size: 60
7104138 GTGTTAAAAT
7104148 TTTTTTATTGATATCAATTTCACATTTTATCTTTAAAATAACTTATTAAAAAATTATTAA
1 TTTTTTATTGATATCAATTTCACATTTTATCTTTAAAATAACTTATTAAAAAATTATTAA
*
7104208 TTTTCTATTGATATCAATTTCACATTTTATCTTTAAAATAACTTATTAAAAAATTATTAA
1 TTTTTTATTGATATCAATTTCACATTTTATCTTTAAAATAACTTATTAAAAAATTATTAA
* *
7104268 TTTTTTATTGATATCAATTTCACATTTTATCTTTAAAATAATTTATT-AAAAATTATT-T
1 TTTTTTATTGATATCAATTTCACATTTTATCTTTAAAATAACTTATTAAAAAATTATTAA
7104326 TTTTTTAT
1 TTTTTTAT
7104334 ATTTAATATA
Statistics
Matches: 122, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
58 8 0.07
59 10 0.08
60 104 0.85
ACGTcount: A:0.38, C:0.08, G:0.02, T:0.53
Consensus pattern (60 bp):
TTTTTTATTGATATCAATTTCACATTTTATCTTTAAAATAACTTATTAAAAAATTATTAA
Found at i:7106072 original size:13 final size:13
Alignment explanation
Indices: 7106054--7106099 Score: 65
Period size: 13 Copynumber: 3.5 Consensus size: 13
7106044 AGCAATATAA
7106054 TGTTGAAATCTCC
1 TGTTGAAATCTCC
* **
7106067 TGTTGAAATATAA
1 TGTTGAAATCTCC
7106080 TGTTGAAATCTCC
1 TGTTGAAATCTCC
7106093 TGTTGAA
1 TGTTGAA
7106100 CATTTTACCT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.39
Consensus pattern (13 bp):
TGTTGAAATCTCC
Found at i:7106083 original size:26 final size:26
Alignment explanation
Indices: 7106047--7106099 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
7106037 ACCCAGAAGC
7106047 AATATAATGTTGAAATCTCCTGTTGA
1 AATATAATGTTGAAATCTCCTGTTGA
7106073 AATATAATGTTGAAATCTCCTGTTGA
1 AATATAATGTTGAAATCTCCTGTTGA
7106099 A
1 A
7106100 CATTTTACCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.36, C:0.11, G:0.15, T:0.38
Consensus pattern (26 bp):
AATATAATGTTGAAATCTCCTGTTGA
Found at i:7108333 original size:14 final size:15
Alignment explanation
Indices: 7108306--7108335 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
7108296 ATAACTTTCT
7108306 AAATATTTATTATTA
1 AAATATTTATTATTA
7108321 AAATATTTA-TATTA
1 AAATATTTATTATTA
7108335 A
1 A
7108336 TCAAAATGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
AAATATTTATTATTA
Found at i:7109673 original size:36 final size:36
Alignment explanation
Indices: 7109629--7109708 Score: 151
Period size: 36 Copynumber: 2.2 Consensus size: 36
7109619 AGCTTAGGAG
7109629 GTATGTTAAGTAGGTTGTATATAAATTATATGCTAT
1 GTATGTTAAGTAGGTTGTATATAAATTATATGCTAT
7109665 GTATGTTAAGTAGGTTGTATATAAATTATATGCTAT
1 GTATGTTAAGTAGGTTGTATATAAATTATATGCTAT
7109701 GTTATGTT
1 G-TATGTT
7109709 TCTTAAAAAT
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
36 37 0.86
37 6 0.14
ACGTcount: A:0.31, C:0.03, G:0.20, T:0.46
Consensus pattern (36 bp):
GTATGTTAAGTAGGTTGTATATAAATTATATGCTAT
Found at i:7110029 original size:17 final size:17
Alignment explanation
Indices: 7110004--7110037 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
7109994 TTGGAGGTAT
* *
7110004 GATATGATATGATATGA
1 GATAAGATAAGATATGA
7110021 GATAAGATAAGATATGA
1 GATAAGATAAGATATGA
7110038 AACATGCTAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.24, T:0.29
Consensus pattern (17 bp):
GATAAGATAAGATATGA
Found at i:7122311 original size:89 final size:89
Alignment explanation
Indices: 7122145--7122320 Score: 201
Period size: 89 Copynumber: 2.0 Consensus size: 89
7122135 ATTCACTTTG
* * * * * *
7122145 GTATTTGAACTTTCAAAATGCATCAAAAAGGCTCTAAAACTTTTTTAAAAAGGAAATTAAGCCCT
1 GTATTTGAACTTTCAAAATGAATCAAAAAAGCCCTAAAACTTTTTAAAAAAAGAAATTAAGCCCC
*
7122210 AGGTTTTATTTTGCACTCAATTAA
66 AGATTTTATTTTGCACTCAATTAA
* * * * * *
7122234 GTATTTGAACTTTTAAATTTAATCAAAAAAGCCCTTAAACTTTTTCAAAAAAAGCAATTATGCCC
1 GTATTTGAACTTTCAAAATGAATCAAAAAAGCCCTAAAACTTTTT-AAAAAAAGAAATTAAGCCC
* *
7122299 CCGATTTT-TTTTGCTCTCAATT
65 CAGATTTTATTTTGCACTCAATT
7122321 GGGTACTTGA
Statistics
Matches: 71, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
89 51 0.72
90 20 0.28
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.37
Consensus pattern (89 bp):
GTATTTGAACTTTCAAAATGAATCAAAAAAGCCCTAAAACTTTTTAAAAAAAGAAATTAAGCCCC
AGATTTTATTTTGCACTCAATTAA
Found at i:7122360 original size:21 final size:21
Alignment explanation
Indices: 7122334--7122391 Score: 107
Period size: 21 Copynumber: 2.8 Consensus size: 21
7122324 TACTTGAATG
7122334 GTCAACTGTTAAAGTTTAATA
1 GTCAACTGTTAAAGTTTAATA
7122355 GTCAACTGTTAAAGTTTAATA
1 GTCAACTGTTAAAGTTTAATA
*
7122376 GTCAACTATTAAAGTT
1 GTCAACTGTTAAAGTT
7122392 AACGGTCAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38
Consensus pattern (21 bp):
GTCAACTGTTAAAGTTTAATA
Found at i:7122577 original size:90 final size:88
Alignment explanation
Indices: 7122401--7122662 Score: 287
Period size: 90 Copynumber: 2.9 Consensus size: 88
7122391 TAACGGTCAA
* * * * * * * *
7122401 AGGGCCTTTTTGATGTA-TCTGACAGTTGAAGTACCCAATTAAGTG-AAAA-AAAATTAGGGGCC
1 AGGGCCTTTTTGATGTATTTTGAAAGTTCAAGT-TCCAATTGAGTGCAAAATAAAA-CAAGGGCT
*
7122463 TAAGTACTTTTTTTGAAAAAATTTG
64 TAATTACTTTTTTTGAAAAAATTTG
*
7122488 AGGGCCTTTTTGATGTATTTTGAAAGTTCAAGTTCTCAATTGAGTGCAAAATAAAACCAGTGGCT
1 AGGGCCTTTTTGATGTATTTTGAAAGTTCAAGTTC-CAATTGAGTGCAAAATAAAACAAG-GGCT
* *
7122553 TAATTGCTTTTTTTGAAAATATTTG
64 TAATTACTTTTTTTGAAAAAATTTG
* * * * *
7122578 AGGGCCTTTTTAATGTATTTTAAAAGTTCAAGTATCCAAGTGAATGCAAAATAAAAGCAAGGGTT
1 AGGGCCTTTTTGATGTATTTTGAAAGTTCAAGT-TCCAATTGAGTGCAAAATAAAA-CAAGGGCT
*
7122643 TAATTACTTTTTTTTAAAAA
64 TAATTACTTTTTTTGAAAAA
7122663 GTTAGAGGAC
Statistics
Matches: 147, Mismatches: 21, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
87 18 0.12
88 21 0.14
89 5 0.03
90 98 0.67
91 5 0.03
ACGTcount: A:0.34, C:0.11, G:0.18, T:0.37
Consensus pattern (88 bp):
AGGGCCTTTTTGATGTATTTTGAAAGTTCAAGTTCCAATTGAGTGCAAAATAAAACAAGGGCTTA
ATTACTTTTTTTGAAAAAATTTG
Found at i:7122974 original size:16 final size:16
Alignment explanation
Indices: 7122953--7122990 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
7122943 AGAACACAAA
7122953 TATAAATTGAA-ATAAT
1 TATAAATT-AACATAAT
*
7122969 TATAAATTAACATATT
1 TATAAATTAACATAAT
7122985 TATAAA
1 TATAAA
7122991 ATTTTTAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 2 0.10
16 18 0.90
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.39
Consensus pattern (16 bp):
TATAAATTAACATAAT
Found at i:7123425 original size:67 final size:67
Alignment explanation
Indices: 7123340--7123628 Score: 220
Period size: 67 Copynumber: 4.3 Consensus size: 67
7123330 TTCACGAAGA
* * *
7123340 TGAGACATATCTCTAAAAATTGATAGTCAAGCCCCTCCATGAACCGTTTAATGGCTCTCCACAGA
1 TGAGACATAACTCCAAAAATTGATAGTCGAGCCCCTCCATGAACCGTTTAATGGCTCTCCACAGA
7123405 GG
66 GG
* * * * * * * * * *** * * **
7123407 TGAGACATAACTCCAAAAACTGATAGTTGGGACCTTCTATGAATCATTCAGCAGCCCTACGTAGA
1 TGAGACATAACTCCAAAAATTGATAGTCGAGCCCCTCCATGAACCGTTTAATGGCTCTCCACAGA
7123472 GG
66 GG
* * * * * * ** * *
7123474 TGAGGCATAACACCAAAAATTGAAAATCGAG-CTCTCCATGAACTGTTTAATCACTCTCTACGGA
1 TGAGACATAACTCCAAAAATTGATAGTCGAGCCCCTCCATGAACCGTTTAATGGCTCTCCACAGA
*
7123538 GA
66 GG
* * * * * *
7123540 TGAGGCATATCTCCAAAAATTGATAGTTGAGCCCCTCCATGAATCGTTTAGTGGCTCTCCACAAA
1 TGAGACATAACTCCAAAAATTGATAGTCGAGCCCCTCCATGAACCGTTTAATGGCTCTCCACAGA
*
7123605 AG
66 GG
7123607 TGAGACATATATCTCCAAAAAT
1 TGAGACATA-A-CTCCAAAAAT
7123629 ATAACTCCAG
Statistics
Matches: 157, Mismatches: 62, Indels: 4
0.70 0.28 0.02
Matches are distributed among these distances:
66 43 0.27
67 104 0.66
69 10 0.06
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.25
Consensus pattern (67 bp):
TGAGACATAACTCCAAAAATTGATAGTCGAGCCCCTCCATGAACCGTTTAATGGCTCTCCACAGA
GG
Found at i:7125415 original size:19 final size:19
Alignment explanation
Indices: 7125391--7125430 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
7125381 TTTCAGTTTC
*
7125391 ATTTTGTTACTTTTGTAAT
1 ATTTTGTAACTTTTGTAAT
7125410 ATTTTGTAACTTTTGTAAT
1 ATTTTGTAACTTTTGTAAT
7125429 AT
1 AT
7125431 CAAAAGTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.25, C:0.05, G:0.10, T:0.60
Consensus pattern (19 bp):
ATTTTGTAACTTTTGTAAT
Found at i:7125559 original size:16 final size:16
Alignment explanation
Indices: 7125538--7125575 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
7125528 AGAACACAAA
7125538 TATAAATTGAA-ATAAT
1 TATAAATT-AACATAAT
*
7125554 TATAAATTAACATATT
1 TATAAATTAACATAAT
7125570 TATAAA
1 TATAAA
7125576 ATTTTTAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 2 0.10
16 18 0.90
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.39
Consensus pattern (16 bp):
TATAAATTAACATAAT
Found at i:7126010 original size:67 final size:67
Alignment explanation
Indices: 7125925--7126213 Score: 204
Period size: 67 Copynumber: 4.3 Consensus size: 67
7125915 TTCACGAAAA
* * * *
7125925 TGAGACATATCTCTAAAAA-TGTATAGTCAAGCCCCTCCATGAACCGTTTAATGGCTCTCCCCAG
1 TGAGACATAACTCCAAAAATTG-ATAGTCGAGCCCCTCCATGAACCGTTTAATGGCTCTCCACAG
7125989 AGG
65 AGG
* * * * ** * * * *** * * **
7125992 TGAGACATAACTCCAAAAACTGATAGTTGGGACCCTTTATGAATCATTCAGCAGCCCTACGTAGA
1 TGAGACATAACTCCAAAAATTGATAGTCGAGCCCCTCCATGAACCGTTTAATGGCTCTCCACAGA
7126057 GG
66 GG
* * * * * * ** *
7126059 TGAGGCATAACACCAAAAATTGAAAATCGAG-CTCTCCATGAACTGTTTAATCACTCTCCACGGA
1 TGAGACATAACTCCAAAAATTGATAGTCGAGCCCCTCCATGAACCGTTTAATGGCTCTCCACAGA
*
7126123 GA
66 GG
* * * * * *
7126125 TGAGGCATATCTCCAAAAATTGATAGTTGAGCCCCTCCATGAATCGTTTAGTGGCTCTCCACAAA
1 TGAGACATAACTCCAAAAATTGATAGTCGAGCCCCTCCATGAACCGTTTAATGGCTCTCCACAGA
*
7126190 AG
66 GG
7126192 TGAGACATATATCTCCAAAAAT
1 TGAGACATA-A-CTCCAAAAAT
7126214 ATAACTCCAG
Statistics
Matches: 159, Mismatches: 59, Indels: 6
0.71 0.26 0.03
Matches are distributed among these distances:
66 44 0.28
67 103 0.65
68 2 0.01
69 10 0.06
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (67 bp):
TGAGACATAACTCCAAAAATTGATAGTCGAGCCCCTCCATGAACCGTTTAATGGCTCTCCACAGA
GG
Found at i:7134031 original size:44 final size:44
Alignment explanation
Indices: 7133983--7134069 Score: 174
Period size: 44 Copynumber: 2.0 Consensus size: 44
7133973 AACATATACG
7133983 TACAAACTATAAATCACATATATTTTTTTTATCATTTATATGTT
1 TACAAACTATAAATCACATATATTTTTTTTATCATTTATATGTT
7134027 TACAAACTATAAATCACATATATTTTTTTTATCATTTATATGT
1 TACAAACTATAAATCACATATATTTTTTTTATCATTTATATGT
7134070 AATTAGCTAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.37, C:0.11, G:0.02, T:0.49
Consensus pattern (44 bp):
TACAAACTATAAATCACATATATTTTTTTTATCATTTATATGTT
Found at i:7136751 original size:3 final size:3
Alignment explanation
Indices: 7136743--7136773 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
7136733 CATACTTTCC
7136743 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT C
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT C
7136774 GTTGTTGTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.35, G:0.00, T:0.32
Consensus pattern (3 bp):
CAT
Found at i:7140303 original size:169 final size:159
Alignment explanation
Indices: 7140103--7140437 Score: 472
Period size: 159 Copynumber: 2.0 Consensus size: 159
7140093 ATCCCGTCAA
* *
7140103 AGGTAATTTTCTTTCATTTGCTTCATTCATGACATGTTTTTCTTTGCTTCATTCATGACTATGCA
1 AGGTAATTTTCTTTCATTTGCTTAATTCATGACATGCTTTTCTTTGCTT--TTCATGA-TATGC-
* * * * *
7140168 ATGATTGTTTTTATTATCTGCTAGCTTTGTAAGATAGTCAAGGAAGTCAACTTCATTGCTTCATT
62 -T-ACTG---TTA-TAGCAGCTAGCTCTGTAAGATAGTCAAGGAAGTCAACTTCACTGCTTCATT
*
7140233 TTCAGTTCTAATCTCTCAACACATTTCGGCCACTAAGTC
121 TTCAGTTCTAATCTCTCAACACATTTCAGCCACTAAGTC
* * *
7140272 AGGTAATTTTCTTTCATTTGCTTAATTCATGACATGCTTTTCTTTGCTTTTGATTATCTGCTACT
1 AGGTAATTTTCTTTCATTTGCTTAATTCATGACATGCTTTTCTTTGCTTTTCATGATATGCTACT
7140337 GTTATAGCAGCTAGCTCTGTAAGATAGTCAAGGAAGTCAACTTCACTGCTTCATTTTCAGTTCTA
66 GTTATAGCAGCTAGCTCTGTAAGATAGTCAAGGAAGTCAACTTCACTGCTTCATTTTCAGTTCTA
*
7140402 ATCTCTCAACACTTTTCAGCCACTAAGTC
131 ATCTCTCAACACATTTCAGCCACTAAGTC
7140431 AGGTAAT
1 AGGTAAT
7140438 AAGATCTGAA
Statistics
Matches: 154, Mismatches: 12, Indels: 10
0.88 0.07 0.06
Matches are distributed among these distances:
159 91 0.59
160 3 0.02
163 3 0.02
164 1 0.01
166 4 0.03
167 5 0.03
169 47 0.31
ACGTcount: A:0.24, C:0.20, G:0.14, T:0.42
Consensus pattern (159 bp):
AGGTAATTTTCTTTCATTTGCTTAATTCATGACATGCTTTTCTTTGCTTTTCATGATATGCTACT
GTTATAGCAGCTAGCTCTGTAAGATAGTCAAGGAAGTCAACTTCACTGCTTCATTTTCAGTTCTA
ATCTCTCAACACATTTCAGCCACTAAGTC
Found at i:7141195 original size:10 final size:11
Alignment explanation
Indices: 7141170--7141197 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
7141160 TATAAAATAA
7141170 AAAAATTCTAG
1 AAAAATTCTAG
7141181 AAAAATTCTAG
1 AAAAATTCTAG
7141192 AAAAAT
1 AAAAAT
7141198 AAAATCTTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.61, C:0.07, G:0.07, T:0.25
Consensus pattern (11 bp):
AAAAATTCTAG
Found at i:7142218 original size:26 final size:27
Alignment explanation
Indices: 7142167--7142218 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 27
7142157 CCTACTTTCC
* *
7142167 TTTCATTTGCTTATTTCATTACATGCT
1 TTTCATTTGCTTAATTCATGACATGCT
7142194 TTTC-TTTGCTTAATT-ATGACTATGC
1 TTTCATTTGCTTAATTCATGAC-ATGC
7142219 AATGATTGCT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 4 0.18
26 14 0.64
27 4 0.18
ACGTcount: A:0.19, C:0.17, G:0.10, T:0.54
Consensus pattern (27 bp):
TTTCATTTGCTTAATTCATGACATGCT
Found at i:7142377 original size:26 final size:28
Alignment explanation
Indices: 7142342--7142394 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 28
7142332 GGTAATTTTC
*
7142342 TTTCATTTGCTTCCTTCATGAC-ATGCT
1 TTTCATTTGCTTCATTCATGACTATGCT
7142369 TTTC-TTTGCTTCATTCATGACTATGC
1 TTTCATTTGCTTCATTCATGACTATGC
7142395 AATGATTGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 16 0.67
27 8 0.33
ACGTcount: A:0.15, C:0.25, G:0.11, T:0.49
Consensus pattern (28 bp):
TTTCATTTGCTTCATTCATGACTATGCT
Found at i:7146342 original size:36 final size:36
Alignment explanation
Indices: 7146302--7146373 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
7146292 CATATTATAG
*
7146302 AACTTGTAGTATAATTA-CATTTTAATTTATAAAATA
1 AACTTGTACTATAATTATC-TTTTAATTTATAAAATA
*
7146338 AACTTGTACTATAATTATCTTTTAGTTTATAAAATA
1 AACTTGTACTATAATTATCTTTTAATTTATAAAATA
7146374 TCATTTATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
36 32 0.97
37 1 0.03
ACGTcount: A:0.42, C:0.07, G:0.06, T:0.46
Consensus pattern (36 bp):
AACTTGTACTATAATTATCTTTTAATTTATAAAATA
Found at i:7149279 original size:29 final size:28
Alignment explanation
Indices: 7149212--7149279 Score: 66
Period size: 28 Copynumber: 2.4 Consensus size: 28
7149202 GGTGGTATAA
**
7149212 TTTGGAGATTTTGGGTAAGGGTTTTGAT
1 TTTGGAGATTTTGGGTAAGGGTTTCAAT
* * *
7149240 TTTGG-GAATTTTTGTTTAGGGTTTCCAAT
1 TTTGGAG-ATTTTGGGTAAGGGTTT-CAAT
7149269 TTTGGAGATTT
1 TTTGGAGATTT
7149280 CTCACACCGC
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
27 1 0.03
28 19 0.59
29 11 0.34
30 1 0.03
ACGTcount: A:0.18, C:0.03, G:0.29, T:0.50
Consensus pattern (28 bp):
TTTGGAGATTTTGGGTAAGGGTTTCAAT
Found at i:7153478 original size:20 final size:20
Alignment explanation
Indices: 7153453--7153494 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
7153443 GATGATATGG
*
7153453 AACCACTTGTGTACTGATGT
1 AACCACTTGTGTACTAATGT
7153473 AACCACTTGTGTACTAATGT
1 AACCACTTGTGTACTAATGT
7153493 AA
1 AA
7153495 ATCAAAATGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (20 bp):
AACCACTTGTGTACTAATGT
Found at i:7156097 original size:26 final size:25
Alignment explanation
Indices: 7156068--7156166 Score: 110
Period size: 26 Copynumber: 3.8 Consensus size: 25
7156058 CTTTGTTTTT
7156068 AGGGGGTTGTTTTTTGTTTTTTGAGG
1 AGGGGGTTGTTTTTTGTTTTTTG-GG
* *
7156094 AGGGGTTTTTTTTTTTTGTTTTTT-GG
1 AGGGG--GTTGTTTTTTGTTTTTTGGG
*
7156120 AGGAGGGTTGTTTTTTGTTTTTTGGA
1 AGG-GGGTTGTTTTTTGTTTTTTGGG
*
7156146 ATAGGGGTTGTTTTTTGTTTT
1 A-GGGGGTTGTTTTTTGTTTT
7156167 GGAAAGGCTA
Statistics
Matches: 62, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
25 15 0.24
26 29 0.47
27 3 0.05
28 15 0.24
ACGTcount: A:0.08, C:0.00, G:0.32, T:0.60
Consensus pattern (25 bp):
AGGGGGTTGTTTTTTGTTTTTTGGG
Found at i:7156099 original size:25 final size:26
Alignment explanation
Indices: 7156070--7156166 Score: 126
Period size: 25 Copynumber: 3.7 Consensus size: 26
7156060 TTGTTTTTAG
7156070 GGGGTTGTTTTTTGTTTTTT-GAGGA
1 GGGGTTGTTTTTTGTTTTTTGGAGGA
*
7156095 GGGGTTTTTTTTTTTTGTTTTTTGGAGGA
1 GGGG---TTGTTTTTTGTTTTTTGGAGGA
**
7156124 -GGGTTGTTTTTTGTTTTTTGGAATA
1 GGGGTTGTTTTTTGTTTTTTGGAGGA
7156149 GGGGTTGTTTTTTGTTTT
1 GGGGTTGTTTTTTGTTTT
7156167 GGAAAGGCTA
Statistics
Matches: 63, Mismatches: 4, Indels: 9
0.83 0.05 0.12
Matches are distributed among these distances:
25 23 0.37
26 17 0.27
28 18 0.29
29 5 0.08
ACGTcount: A:0.07, C:0.00, G:0.32, T:0.61
Consensus pattern (26 bp):
GGGGTTGTTTTTTGTTTTTTGGAGGA
Found at i:7156109 original size:28 final size:31
Alignment explanation
Indices: 7156074--7156143 Score: 110
Period size: 28 Copynumber: 2.3 Consensus size: 31
7156064 TTTTAGGGGG
7156074 TTGTTTTTTGTTTTTT-GAGGAGGG-GTTTT
1 TTGTTTTTTGTTTTTTGGAGGAGGGTGTTTT
7156103 TT-TTTTTTGTTTTTTGGAGGAGGGTTGTTTT
1 TTGTTTTTTGTTTTTTGGAGGAGGG-TGTTTT
7156134 TTGTTTTTTG
1 TTGTTTTTTG
7156144 GAATAGGGGT
Statistics
Matches: 37, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
28 13 0.35
29 10 0.27
31 7 0.19
32 7 0.19
ACGTcount: A:0.06, C:0.00, G:0.29, T:0.66
Consensus pattern (31 bp):
TTGTTTTTTGTTTTTTGGAGGAGGGTGTTTT
Found at i:7156330 original size:26 final size:25
Alignment explanation
Indices: 7156297--7156391 Score: 100
Period size: 26 Copynumber: 3.6 Consensus size: 25
7156287 TAGCCTTTCC
* *
7156297 AAAACAAAAAACAACACTTATTCCAA
1 AAAACAAAAAACAAC-CCTACTCCAA
*
7156323 AAAACAAAAAACAACCCTCCTCCAA
1 AAAACAAAAAACAACCCTACTCCAA
*
7156348 AAAACAAAAAAAAAACAACCCCTCCTCCAA
1 AAAAC----AAAAAACAA-CCCTACTCCAA
7156378 AAAACAAAAAACAA
1 AAAACAAAAAACAA
7156392 TCCCCTAAAA
Statistics
Matches: 61, Mismatches: 3, Indels: 10
0.82 0.04 0.14
Matches are distributed among these distances:
25 12 0.20
26 24 0.39
29 9 0.15
30 16 0.26
ACGTcount: A:0.63, C:0.28, G:0.00, T:0.08
Consensus pattern (25 bp):
AAAACAAAAAACAACCCTACTCCAA
Found at i:7156331 original size:25 final size:24
Alignment explanation
Indices: 7156280--7156357 Score: 70
Period size: 24 Copynumber: 3.2 Consensus size: 24
7156270 GATTAATCTC
* * *
7156280 CAAAAACTAGCCT-TTCCAAAACA
1 CAAAAACAACCCTATTCCAAAAAA
*
7156303 -AAAAACAACACTTATTCCAAAAAA
1 CAAAAACAAC-CCTATTCCAAAAAA
**
7156327 CAAAAAACAACCCTCCTCCAAAAAA
1 C-AAAAACAACCCTATTCCAAAAAA
7156352 CAAAAA
1 CAAAAA
7156358 AAAAACAACC
Statistics
Matches: 44, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
22 7 0.16
23 2 0.05
24 14 0.32
25 12 0.27
26 9 0.20
ACGTcount: A:0.58, C:0.28, G:0.01, T:0.13
Consensus pattern (24 bp):
CAAAAACAACCCTATTCCAAAAAA
Found at i:7156367 original size:29 final size:30
Alignment explanation
Indices: 7156323--7156388 Score: 116
Period size: 30 Copynumber: 2.2 Consensus size: 30
7156313 CTTATTCCAA
7156323 AAAACAAAAAACAA-CCCTCCTCCAAAAAAC
1 AAAA-AAAAAACAACCCCTCCTCCAAAAAAC
7156353 AAAAAAAAAACAACCCCTCCTCCAAAAAAC
1 AAAAAAAAAACAACCCCTCCTCCAAAAAAC
7156383 AAAAAA
1 AAAAAA
7156389 CAATCCCCTA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
29 9 0.26
30 26 0.74
ACGTcount: A:0.64, C:0.30, G:0.00, T:0.06
Consensus pattern (30 bp):
AAAAAAAAAACAACCCCTCCTCCAAAAAAC
Found at i:7165490 original size:703 final size:703
Alignment explanation
Indices: 7164145--7165552 Score: 2753
Period size: 703 Copynumber: 2.0 Consensus size: 703
7164135 CATATGAGCC
7164145 TATAATGGGTGAGGATCGAGGAATCTGCTGGTTCGGGTACCCTTACTTTAGAACCAAACCTCATG
1 TATAATGGGTGAGGATCGAGGAATCTGCTGGTTCGGGTACCCTTACTTTAGAACCAAACCTCATG
7164210 TAGTGAACCTTAGGAGCCCACCCTAGGTAGAACCACCTCGAACCCCTAGTATTCACCCAAATAGG
66 TAGTGAACCTTAGGAGCCCACCCTAGGTAGAACCACCTCGAACCCCTAGTATTCACCCAAATAGG
7164275 TGTTCTATTTATTCTTGCTTGCTTTTGCTTTGTACTAACATGTTTTCTTTTGGTTATGATTGCAT
131 TGTTCTATTTATTCTTGCTTGCTTTTGCTTTGTACTAACATGTTTTCTTTTGGTTATGATTGCAT
7164340 TGCATTTTCATCATAAAAAGAGGTGTTGATTCACGTTCGGTTGTTAAATAGAGAGCTTGTCATAA
196 TGCATTTTCATCATAAAAAGAGGTGTTGATTCACGTTCGGTTGTTAAATAGAGAGCTTGTCATAA
* **
7164405 GGAAATGAGTTTCTTGATAAAGTGGATAATAATATGGTTGTCCGAATATGGTCTAAGGAAACGTG
261 GGAAATGAGTTTCTTGATAAAGTGGATAATAATACGGTTGTCCGAATATGGTCTAAAAAAACGTG
*
7164470 ATAAGAGAGGGATGTTAGTTTAATGGAGGACTACACAACCATTGCTTCGTTGCCCGAGAATTCAA
326 ATAAGAGAGGGATGTTAGTTTAATGGAGGACTACACAACCATTGCTCCGTTGCCCGAGAATTCAA
7164535 AGTGACAAGGATTATTCGAGAGCTGCTCAATTTTTTTTAAAGAGAAGCCAACAAGCATCACGAGG
391 AGTGACAAGGATTATTCGAGAGCTGCTCAATTTTTTTTAAAGAGAAGCCAACAAGCATCACGAGG
7164600 TTGAGTGAGCAACGAGTCACGGCCCGGATCAAGTAAAAGGAGATAGAAGAGACGTCCCTTTTGAA
456 TTGAGTGAGCAACGAGTCACGGCCCGGATCAAGTAAAAGGAGATAGAAGAGACGTCCCTTTTGAA
7164665 GAGTTTGTGAGACTTATCTTAACACTCGAATGAAGAAGAGGATCGAAGGACTCCGCCTATGAGGG
521 GAGTTTGTGAGACTTATCTTAACACTCGAATGAAGAAGAGGATCGAAGGACTCCGCCTATGAGGG
7164730 CGAAACTGTATATATATATCCGCTTTATGTAAAGAGATTTGTTTTCTAATAAGGTTGTTCTAATA
586 CGAAACTGTATATATATATCCGCTTTATGTAAAGAGATTTGTTTTCTAATAAGGTTGTTCTAATA
*
7164795 GAATTGAACCAAGAATCAACGTCTCTTTTTGCATTCATTTCATACTTTTGCAT
651 GAATTGAACCAAGAATCAACGTCTCTTTTTGCATTCATTTCATACATTTGCAT
7164848 TATAATGGGTGAGGATCGAGGAATCTGCTGGTTCGGGTACCCTTACTTTAGAACCAAACCTCATG
1 TATAATGGGTGAGGATCGAGGAATCTGCTGGTTCGGGTACCCTTACTTTAGAACCAAACCTCATG
7164913 TAGTGAACCTTAGGAGCCCACCCTAGGTAGAACCACCTCGAACCCCTAGTATTCACCCAAATAGG
66 TAGTGAACCTTAGGAGCCCACCCTAGGTAGAACCACCTCGAACCCCTAGTATTCACCCAAATAGG
7164978 TGTTCTATTTATTCTTGCTTGCTTTTGCTTTGTACTAACATGTTTTCTTTTGGTTATGATTGCAT
131 TGTTCTATTTATTCTTGCTTGCTTTTGCTTTGTACTAACATGTTTTCTTTTGGTTATGATTGCAT
7165043 TGCATTTTCATCATAAAAAGAGGTGTTGATTCACGTTCGGTTGTTAAATAGAGAGCTTGTCATAA
196 TGCATTTTCATCATAAAAAGAGGTGTTGATTCACGTTCGGTTGTTAAATAGAGAGCTTGTCATAA
7165108 GGAAATGAGTTTCTTGATAAAGTGGATAATAATACGGTTGTCCGAATATGGTCTAAAAAAACGTG
261 GGAAATGAGTTTCTTGATAAAGTGGATAATAATACGGTTGTCCGAATATGGTCTAAAAAAACGTG
7165173 ATAAGAGAGGGATGTTAGTTTAATGGAGGACTACACAACCATTGCTCCGTTGCCCGAGAATTCAA
326 ATAAGAGAGGGATGTTAGTTTAATGGAGGACTACACAACCATTGCTCCGTTGCCCGAGAATTCAA
*
7165238 AGTGACAAGGATTATTCGAGAGCTGCTCAATTTTTTTTAAAGAGAAGCCAACGAGCATCACGAGG
391 AGTGACAAGGATTATTCGAGAGCTGCTCAATTTTTTTTAAAGAGAAGCCAACAAGCATCACGAGG
*
7165303 TTGAGTGAGCAACGAGTCACGGCCTGGATCAAGTAAAAGGAGATAGAAGAGACGTCCCTTTTGAA
456 TTGAGTGAGCAACGAGTCACGGCCCGGATCAAGTAAAAGGAGATAGAAGAGACGTCCCTTTTGAA
7165368 GAGTTTGTGAGACTTATCTTAACACTCGAATGAAGAAGAGGATCGAAGGACTCCGCCTATGAGGG
521 GAGTTTGTGAGACTTATCTTAACACTCGAATGAAGAAGAGGATCGAAGGACTCCGCCTATGAGGG
7165433 CGAAACTGTATATATATATCCGCTTTATGTAAAGAGATTTGTTTTCTAATAAGGTTGTTCTAATA
586 CGAAACTGTATATATATATCCGCTTTATGTAAAGAGATTTGTTTTCTAATAAGGTTGTTCTAATA
7165498 GAATTGAACCAAGAATCAACGTCTCTTTTTGCATTCATTTCATACATTTGCAT
651 GAATTGAACCAAGAATCAACGTCTCTTTTTGCATTCATTTCATACATTTGCAT
7165551 TA
1 TA
7165553 CATTGCATCA
Statistics
Matches: 698, Mismatches: 7, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
703 698 1.00
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (703 bp):
TATAATGGGTGAGGATCGAGGAATCTGCTGGTTCGGGTACCCTTACTTTAGAACCAAACCTCATG
TAGTGAACCTTAGGAGCCCACCCTAGGTAGAACCACCTCGAACCCCTAGTATTCACCCAAATAGG
TGTTCTATTTATTCTTGCTTGCTTTTGCTTTGTACTAACATGTTTTCTTTTGGTTATGATTGCAT
TGCATTTTCATCATAAAAAGAGGTGTTGATTCACGTTCGGTTGTTAAATAGAGAGCTTGTCATAA
GGAAATGAGTTTCTTGATAAAGTGGATAATAATACGGTTGTCCGAATATGGTCTAAAAAAACGTG
ATAAGAGAGGGATGTTAGTTTAATGGAGGACTACACAACCATTGCTCCGTTGCCCGAGAATTCAA
AGTGACAAGGATTATTCGAGAGCTGCTCAATTTTTTTTAAAGAGAAGCCAACAAGCATCACGAGG
TTGAGTGAGCAACGAGTCACGGCCCGGATCAAGTAAAAGGAGATAGAAGAGACGTCCCTTTTGAA
GAGTTTGTGAGACTTATCTTAACACTCGAATGAAGAAGAGGATCGAAGGACTCCGCCTATGAGGG
CGAAACTGTATATATATATCCGCTTTATGTAAAGAGATTTGTTTTCTAATAAGGTTGTTCTAATA
GAATTGAACCAAGAATCAACGTCTCTTTTTGCATTCATTTCATACATTTGCAT
Found at i:7165549 original size:19 final size:19
Alignment explanation
Indices: 7165525--7165571 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
7165515 AACGTCTCTT
*
7165525 TTTGCATT-CATTTCATACA
1 TTTGCATTACATTGCAT-CA
7165544 TTTGCATTACATTGCATCA
1 TTTGCATTACATTGCATCA
*
7165563 TATGCATTA
1 TTTGCATTA
7165572 GATTTTCATG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.28, C:0.19, G:0.09, T:0.45
Consensus pattern (19 bp):
TTTGCATTACATTGCATCA
Found at i:7169932 original size:46 final size:46
Alignment explanation
Indices: 7169870--7170623 Score: 173
Period size: 46 Copynumber: 16.4 Consensus size: 46
7169860 ATAATTCTAT
7169870 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
* * ** * * *
7169916 CTTCCTGTATTTGGCAG-CGAAGTAGATCAAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGC
* * * * ** *
7169962 CTCCCTG-A-CT-ACAGTGGAGTACATTGAAG-CCG-ATAATTCTAT--
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCA-GA-TCT-TGC
7170004 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
* ** ** * * *
7170050 CTTCCTGTATTTGGCAG-CAAAGTAGATCAAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGC
* * * * ** *
7170096 CTCCCTG-A-CT-ACAGTGGAGTACATTGAAG-CCG-ATAATTCTAT--
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCA-GA-TCT-TGC
* * *
7170138 CTCCCTGTATTTGGTAGTGGAATAGATTGAAGATTGAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGA-T-----T-GCAGATCTTGC
* * * *
7170191 CTCCCTG-A-CT-GCAGTGGAGTACATTGAAGCCAAT--A-ATTCTAT--
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAG--ATTGCAGA-TCT-TGC
* *
7170233 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGAT------T-GCAGATCTTGC
* * * *
7170286 CTCCCTG-A-CT-ACAGTGGAGTACATTGAAGATTGCA-ACTCTAT--
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGA-TCT-TGC
* * *
7170328 CTCCCTGTATTTGGCAGTTGAATAGATTGAAGATCGAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGAT------T-GCAGATCTTGC
* * * * * ** * * **
7170381 CTCCATGTGA-CT-ACAGTGGAGTACATTGAAG-CCG-ATAACTCTAT
1 CTCCCTGT-ATTTGGCAGTGGAATAGATTGAAGATTGCAGATCT-TGC
7170425 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
* * * ** * * *
7170471 CTTCCTGTATTTGGCAG-CGAAGCAGATCAAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGC
* * * * * ** * * **
7170517 CTCCATGTGA-CT-ACAGTGGAGTACATTGAAG-CCG-ATAACTCTAT
1 CTCCCTGT-ATTTGGCAGTGGAATAGATTGAAGATTGCAGATCT-TGC
* *
7170561 CTCCCTGTATTTAGCAGTGGAATAGATTGAAGATTGTAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
*
7170607 CTTCCTGTATTTGGCAG
1 CTCCCTGTATTTGGCAG
7170624 CGAAGCAGAT
Statistics
Matches: 491, Mismatches: 138, Indels: 158
0.62 0.18 0.20
Matches are distributed among these distances:
41 2 0.00
42 34 0.07
43 45 0.09
44 37 0.08
45 119 0.24
46 147 0.30
47 10 0.02
49 1 0.00
50 34 0.07
51 6 0.01
52 28 0.06
53 26 0.05
54 2 0.00
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (46 bp):
CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
Found at i:7170002 original size:134 final size:134
Alignment explanation
Indices: 7169762--7170737 Score: 1200
Period size: 134 Copynumber: 7.1 Consensus size: 134
7169752 GCAGAGTAGG
* *
7169762 TTGAAGATTGCAGATCTTGCCTTCCTGTGTTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTA
1 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGTAGATCAAAGATGGCAGATTTTA
7169827 CCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAA
66 CCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAA
7169892 TAGA
131 TAGA
7169896 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGTAGATCAAAGATGGCAGATTTTA
1 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGTAGATCAAAGATGGCAGATTTTA
7169961 CCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAA
66 CCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAA
7170026 TAGA
131 TAGA
*
7170030 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCAAAGTAGATCAAAGATGGCAGATTTTA
1 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGTAGATCAAAGATGGCAGATTTTA
*
7170095 CCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGTAGTGGAA
66 CCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAA
7170160 TAGA
131 TAGA
* * * * * * * ** *****
7170164 TTGAAGATTGAAGATGGCAGATTTTACCTCCCTG-A-CT-GCAGTGGAGTACATTGAAGCCAATA
1 TTGAAGA-T-----T-GCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGTAGATCAAAGATGGCA
* * * * * * * * *
7170226 -ATTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAGATTTTACCTCC
59 GATTTTACCTCCCTG-A-CT-ACAGTGGAGTACATTGAAG--C--CGAT---A-ATTCTATCTCC
* * * *
7170290 CTG-A-CT-ACAGTGGAGTACA
113 CTGTATTTGGCAGTGGAATAGA
* * *
7170309 TTGAAGATTGCA-ACTCTAT--CTCCCTGTATTTGGCAGTTGAATAGATTGAAGATCGAAGATGG
1 TTGAAGATTGCAGA-TCT-TGCCTTCCTGTATTTGGCAG-CG-A-AG--T--AGATCAAAGATGG
* *
7170371 CAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATT
57 CAGATTTTACCTCC--CTGACTACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATT
7170436 TGGCAGTGGAATAGA
120 TGGCAGTGGAATAGA
*
7170451 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTA
1 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGTAGATCAAAGATGGCAGATTTTA
* * *
7170516 CCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTAGCAGTGG
66 CCTCC--CTGACTACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGG
7170581 AATAGA
129 AATAGA
* *
7170587 TTGAAGATTGTAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTA
1 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGTAGATCAAAGATGGCAGATTTTA
*
7170652 CCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAA
66 CCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAA
7170717 TAGA
131 TAGA
*
7170721 TCGAAGATTGCA-ATCTT
1 TTGAAGATTGCAGATCTT
7170738 ATCTTCCTAA
Statistics
Matches: 735, Mismatches: 68, Indels: 79
0.83 0.08 0.09
Matches are distributed among these distances:
133 5 0.01
134 343 0.47
135 1 0.00
136 160 0.22
137 20 0.03
138 21 0.03
139 16 0.02
140 26 0.04
141 20 0.03
142 27 0.04
143 22 0.03
144 4 0.01
145 18 0.02
146 1 0.00
147 26 0.04
148 22 0.03
149 1 0.00
150 2 0.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (134 bp):
TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGTAGATCAAAGATGGCAGATTTTA
CCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAA
TAGA
Found at i:7170194 original size:95 final size:95
Alignment explanation
Indices: 7170073--7170458 Score: 630
Period size: 95 Copynumber: 4.0 Consensus size: 95
7170063 GCAGCAAAGT
* *
7170073 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTAT
1 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
7170138 CTCCCTGTATTTGGTAGTGGAATAGATTGA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGA
* * * *
7170168 AGATTGAAGATGGCAGATTTTACCTCCCTGACTGCAGTGGAGTACATTGAAGCCAATAATTCTAT
1 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
7170233 CTCCCTGTATTTGGCAGTGGAATAGATTGA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGA
** *
7170263 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGATTG-CAACTCTA
1 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAG-CCGATAACTCTA
*
7170327 TCTCCCTGTATTTGGCAGTTGAATAGATTGA
65 TCTCCCTGTATTTGGCAGTGGAATAGATTGA
*
7170358 AGATCGAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
1 AGATCGAAGATGGCAGATTTTACCTCC--CTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
7170423 ATCTCCCTGTATTTGGCAGTGGAATAGATTGA
64 ATCTCCCTGTATTTGGCAGTGGAATAGATTGA
7170455 AGAT
1 AGAT
7170459 TGCAGATCTT
Statistics
Matches: 269, Mismatches: 18, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
95 203 0.75
96 1 0.00
97 65 0.24
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (95 bp):
AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATTTGGCAGTGGAATAGATTGA
Found at i:7170217 original size:50 final size:50
Alignment explanation
Indices: 7170153--7170318 Score: 150
Period size: 50 Copynumber: 3.4 Consensus size: 50
7170143 TGTATTTGGT
*
7170153 AGTGGAATAGATTGAAGATTGAAGATGGCAGATTTTACCTCCCTGACTGC
1 AGTGGAATACATTGAAGATTGAAGATGGCAGATTTTACCTCCCTGACTGC
* ** * * *
7170203 AGTGGAGTACATTGAAG---CCA-AT---A-ATTCTATCTCCCTGTATTTGGC
1 AGTGGAATACATTGAAGATTGAAGATGGCAGATTTTACCTCCCTG-A-CT-GC
* * *
7170248 AGTGGAATAGATTGAAGATCGAAGATGGCAGATTTTACCTCCCTGACTAC
1 AGTGGAATACATTGAAGATTGAAGATGGCAGATTTTACCTCCCTGACTGC
*
7170298 AGTGGAGTACATTGAAGATTG
1 AGTGGAATACATTGAAGATTG
7170319 CAACTCTATC
Statistics
Matches: 87, Mismatches: 18, Indels: 22
0.69 0.14 0.17
Matches are distributed among these distances:
42 12 0.14
43 2 0.02
44 1 0.01
45 17 0.20
46 2 0.02
47 1 0.01
48 1 0.01
49 2 0.02
50 34 0.39
51 1 0.01
52 2 0.02
53 12 0.14
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (50 bp):
AGTGGAATACATTGAAGATTGAAGATGGCAGATTTTACCTCCCTGACTGC
Found at i:7173851 original size:40 final size:40
Alignment explanation
Indices: 7173610--7173870 Score: 343
Period size: 40 Copynumber: 6.6 Consensus size: 40
7173600 GGTGTCAACA
* * * *
7173610 ATAACCGAGCTAAGTCCCGAAAGCATTTGTGCTAGTGA--
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
7173648 ATAATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAA--CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
7173689 ATATCCGGGCTAAGTCCTGAAGGCATTTGTGCGAGCTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
7173729 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
7173769 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
7173809 ATAACCGGGCTAAGTCCCGAAGGCAATTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* **
7173849 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
7173871 TACTTGGTTT
Statistics
Matches: 200, Mismatches: 17, Indels: 11
0.88 0.07 0.05
Matches are distributed among these distances:
38 4 0.02
39 46 0.23
40 147 0.74
41 3 0.01
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:7176159 original size:22 final size:23
Alignment explanation
Indices: 7176134--7176176 Score: 54
Period size: 22 Copynumber: 1.9 Consensus size: 23
7176124 AAAGCCGAGG
7176134 AGCTCAGTAT-GGAG-AAAAGAAA
1 AGCTCA-TATGGGAGCAAAAGAAA
*
7176156 AGCTGATATGGGAGCAAAAGA
1 AGCTCATATGGGAGCAAAAGA
7176177 GTTTCGTAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 3 0.17
22 9 0.50
23 6 0.33
ACGTcount: A:0.47, C:0.09, G:0.30, T:0.14
Consensus pattern (23 bp):
AGCTCATATGGGAGCAAAAGAAA
Found at i:7181835 original size:40 final size:40
Alignment explanation
Indices: 7181726--7181976 Score: 341
Period size: 40 Copynumber: 6.3 Consensus size: 40
7181716 TATTCGGATG
* * * *
7181726 ATAACCGAGCTAAGTCCCGAAAGCATTTGTGCTAGTGA--
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
7181764 ATAATTCCGAGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAA--CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
7181805 ATATCCGGGCTAAGTCCTGAAGGCATTTGTGCGAGCTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
7181845 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
7181885 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
7181925 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
*
7181965 ATATCC-GGCTAA
1 ATAACCGGGCTAA
7181977 ACCCCGAGGG
Statistics
Matches: 193, Mismatches: 14, Indels: 11
0.89 0.06 0.05
Matches are distributed among these distances:
38 4 0.02
39 37 0.19
40 149 0.77
41 3 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:7184479 original size:17 final size:19
Alignment explanation
Indices: 7184437--7184482 Score: 92
Period size: 19 Copynumber: 2.4 Consensus size: 19
7184427 TGTTAATTAA
7184437 AATATATTCCATTTTTATT
1 AATATATTCCATTTTTATT
7184456 AATATATTCCATTTTTATT
1 AATATATTCCATTTTTATT
7184475 AATATATT
1 AATATATT
7184483 AATAAAATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.35, C:0.09, G:0.00, T:0.57
Consensus pattern (19 bp):
AATATATTCCATTTTTATT
Found at i:7189143 original size:47 final size:46
Alignment explanation
Indices: 7189079--7189170 Score: 116
Period size: 47 Copynumber: 2.0 Consensus size: 46
7189069 GTGTATATAT
*
7189079 TTATATATATTATTATTTAATTACTTTATT-TTAATATTATTATTATG
1 TTATATATATTATTATTTAATTA--TTATTGCTAATATTATTATTATG
* *
7189126 TTATATATATT-TGTATTTCATTATTATTGCTAGTATTATTATTAT
1 TTATATATATTAT-TATTTAATTATTATTGCTAATATTATTATTAT
7189171 TATTAATATT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
45 5 0.12
46 15 0.38
47 20 0.50
ACGTcount: A:0.32, C:0.03, G:0.04, T:0.61
Consensus pattern (46 bp):
TTATATATATTATTATTTAATTATTATTGCTAATATTATTATTATG
Found at i:7189149 original size:134 final size:131
Alignment explanation
Indices: 7189007--7189313 Score: 411
Period size: 134 Copynumber: 2.3 Consensus size: 131
7188997 TCATTTCTAA
* * * *
7189007 TATTATTATTATTATTATTATTATTACCCTTATTAATATTAGTGTATGTTTTTATTATATATGTG
1 TATTATTATTATTATTATTATTATTATCATTATTAATATTAGTGTATGTTTTTATTATATAGGTA
* *
7189072 TATATATTTATATATATTATTA-TTTAATTACTTTATTTTAATATTATTATTA-TGTTATATATA
66 TATATATTTATATATAGTATTATTTTAATTACTTTATTTTAATATTATTATTACTATTAT-TAT-
*
7189135 TTT
129 TAT
** * *
7189138 GTATTTCATTATTATTGCTAGTATTATTATTATTATTAATATTAGTGTATGTTTTTATTATATAG
1 -TA-TT-ATTATTATTATTATTATTATTATCATTATTAATATTAGTGTATGTTTTTATTATATAG
7189203 GTATATATATTTATATATAGTATTATTTTTAATTACTTTATTTTAATATTATTATTACTATTATT
63 GTATATATATTTATATATAGTATTA-TTTTAATTACTTTATTTTAATATTATTATTACTATTATT
7189268 ATTAT
127 ATTAT
* * * *
7189273 TATTATTATTATTATTATCACTATTATCGTTATTACTATTA
1 TATTATTATTATTATTATTATTATTATCATTATTAATATTA
7189314 TTAATTTTTT
Statistics
Matches: 151, Mismatches: 19, Indels: 10
0.84 0.11 0.06
Matches are distributed among these distances:
132 31 0.21
133 4 0.03
134 76 0.50
135 2 0.01
136 33 0.22
137 5 0.03
ACGTcount: A:0.32, C:0.04, G:0.05, T:0.59
Consensus pattern (131 bp):
TATTATTATTATTATTATTATTATTATCATTATTAATATTAGTGTATGTTTTTATTATATAGGTA
TATATATTTATATATAGTATTATTTTAATTACTTTATTTTAATATTATTATTACTATTATTATTA
T
Found at i:7189439 original size:3 final size:3
Alignment explanation
Indices: 7188986--7189422 Score: 148
Period size: 3 Copynumber: 144.7 Consensus size: 3
7188976 TTTTATTAAA
* *
7188986 TAT TAT TAT TAT CAT T-T CTAA TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT
* ** * *
7189031 TAC CCT TAT TAA TAT TAGT GTAT GT-T T-T TAT TAT ATAT GT-G TAT
1 TAT TAT TAT TAT TAT TA-T -TAT -TAT TAT TAT TAT -TAT -TAT TAT
* * *
7189075 ATAT T-T ATAT ATAT TAT TAT T-T AAT TAC T-T TAT T-T TAA TAT TAT
1 -TAT TAT -TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * ** *
7189119 TAT TA- TGT TA- TAT ATAT T-T GTAT T-T CAT TAT TAT TGC TAG TAT
1 TAT TAT TAT TAT TAT -TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT
* *
7189162 TAT TAT TAT TAT TAA TAT TAGT GTAT GT-T T-T TAT TAT ATAGG TA-
1 TAT TAT TAT TAT TAT TAT TA-T -TAT -TAT TAT TAT TAT -TA-T TAT
* * * *
7189206 TAT ATAT T-T ATAT ATAG TAT TAT TTT TAAT TAC T-T TAT T-T TAA TAT
1 TAT -TAT TAT -TAT -TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT
* * *
7189252 TAT TAT TAC TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT CAC TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
** * * * *
7189300 CGT TAT TAC TAT TAT TAAT T-T T-T TACT TA- TAC TAT TGT TGT TAT
1 TAT TAT TAT TAT TAT T-AT TAT TAT TA-T TAT TAT TAT TAT TAT TAT
* * * *
7189344 TAT TAT TAT TCCT GAT T-T TAT TAT TAT TAAT GTAT TAT TGT TAT TCTT
1 TAT TAT TAT T-AT TAT TAT TAT TAT TAT T-AT -TAT TAT TAT TAT T-AT
*
7189392 TAT T-T TAT TAT TAC TAT TAT T-T CTAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TA
7189423 CAATTGTAGC
Statistics
Matches: 325, Mismatches: 66, Indels: 86
0.68 0.14 0.18
Matches are distributed among these distances:
2 35 0.11
3 234 0.72
4 51 0.16
5 5 0.02
ACGTcount: A:0.30, C:0.05, G:0.05, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:7189488 original size:3 final size:3
Alignment explanation
Indices: 7189474--7189546 Score: 51
Period size: 3 Copynumber: 24.3 Consensus size: 3
7189464 GTTTATTTAC
* ** *
7189474 TTA TTA TT- TTA TTA TTAA TTA AT- TTA GCA TTA TTTA TTA TTA TCA
1 TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA -TTA TTA TTA TTA
* * *
7189519 TTA TTA TTT TTA TTA TTC TTA CTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
7189547 CTTTTTAAAT
Statistics
Matches: 52, Mismatches: 14, Indels: 8
0.70 0.19 0.11
Matches are distributed among these distances:
2 3 0.06
3 43 0.83
4 6 0.12
ACGTcount: A:0.30, C:0.05, G:0.01, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:7192203 original size:12 final size:11
Alignment explanation
Indices: 7192186--7192235 Score: 50
Period size: 12 Copynumber: 4.5 Consensus size: 11
7192176 ATGTAAACTA
7192186 AAAAAACATAAT
1 AAAAAA-ATAAT
7192198 -AAAAAATATAT
1 AAAAAAATA-AT
*
7192209 AATAAAA-AAT
1 AAAAAAATAAT
7192219 AAAAAAATATAT
1 AAAAAAATA-AT
7192231 AAAAA
1 AAAAA
7192236 TTACCTTTTC
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
10 11 0.34
11 9 0.28
12 12 0.38
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (11 bp):
AAAAAAATAAT
Found at i:7192210 original size:14 final size:14
Alignment explanation
Indices: 7192184--7192219 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
7192174 ATATGTAAAC
7192184 TAAAAAA-ACATAA
1 TAAAAAATACATAA
*
7192197 TAAAAAATATATAA
1 TAAAAAATACATAA
7192211 TAAAAAATA
1 TAAAAAATA
7192220 AAAAAATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
13 7 0.33
14 14 0.67
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.22
Consensus pattern (14 bp):
TAAAAAATACATAA
Found at i:7192220 original size:24 final size:23
Alignment explanation
Indices: 7192187--7192232 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
7192177 TGTAAACTAA
7192187 AAAAACATAATAAAAAATATATAAT
1 AAAAACAT-A-AAAAAATATATAAT
7192212 AAAAA-ATAAAAAAATATATAA
1 AAAAACATAAAAAAATATATAA
7192233 AAATTACCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 13 0.62
23 1 0.05
24 2 0.10
25 5 0.24
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (23 bp):
AAAAACATAAAAAAATATATAAT
Found at i:7192228 original size:20 final size:20
Alignment explanation
Indices: 7192195--7192235 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 20
7192185 AAAAAAACAT
7192195 AATAAAAAATATATAATAAAA
1 AATAAAAAATATAT-ATAAAA
7192216 AATAAAAAA-ATATATAAAA
1 AATAAAAAATATATATAAAA
7192235 A
1 A
7192236 TTACCTTTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 7 0.35
20 4 0.20
21 9 0.45
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (20 bp):
AATAAAAAATATATATAAAA
Found at i:7192840 original size:3 final size:3
Alignment explanation
Indices: 7192834--7192955 Score: 61
Period size: 3 Copynumber: 40.0 Consensus size: 3
7192824 TCATTCCTAA
* * * *
7192834 TAT TAT TAA TAC TAT TAT T-T CTAT TAT TAT TAT TGT TAT TAT TAA
1 TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT
* ** * * * *
7192879 TAT TCT GGT TAT TAA CA- TAT TAT TAT TTT TAAT GTAT TAT TAT TAC
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT -TAT TAT TAT TAT
* *
7192925 TAGT TAT TAC TAT T-T CTAG TAT TAT TAT TAT
1 TA-T TAT TAT TAT TAT -TAT TAT TAT TAT TAT
7192956 ATATAATATT
Statistics
Matches: 88, Mismatches: 23, Indels: 16
0.69 0.18 0.13
Matches are distributed among these distances:
2 3 0.03
3 78 0.89
4 6 0.07
5 1 0.01
ACGTcount: A:0.31, C:0.06, G:0.05, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:7193441 original size:30 final size:27
Alignment explanation
Indices: 7193388--7193443 Score: 76
Period size: 30 Copynumber: 2.0 Consensus size: 27
7193378 ATTGTGTATA
*
7193388 TTCTTAATATTATATATTGTATATATT
1 TTCTTAATACTATATATTGTATATATT
7193415 TTCTTAATAACTATATTATATGTATATAT
1 TTCTTAAT-ACTATA-TAT-TGTATATAT
7193444 AGTACATGCA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
27 8 0.32
28 5 0.20
29 3 0.12
30 9 0.36
ACGTcount: A:0.36, C:0.05, G:0.04, T:0.55
Consensus pattern (27 bp):
TTCTTAATACTATATATTGTATATATT
Found at i:7196927 original size:16 final size:17
Alignment explanation
Indices: 7196895--7196927 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
7196885 TTTATAAGTA
*
7196895 TATATCAATCGTTTCAT
1 TATATCAATCATTTCAT
7196912 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
7196928 GTGTCATCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.33, C:0.15, G:0.03, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:7197432 original size:92 final size:92
Alignment explanation
Indices: 7197223--7197484 Score: 382
Period size: 92 Copynumber: 2.9 Consensus size: 92
7197213 TGCCATAGTG
* * *
7197223 TCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCAATGGTATCTTTCAACCATGGTCTTA
1 TCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
* *
7197288 TTC-TTTTATGTCACGTTGCCACGGTA
66 TTCATTTCATATCACGTTGCCACGGTA
* *
7197314 TCTTTCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
1 TCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
* *
7197379 TTCATTTCATATCACGTTGCTATGGTA
66 TTCATTTCATATCACGTTGCCACGGTA
* * * *
7197406 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTA
1 TCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
**
7197471 CACATTTCATATCA
66 TTCATTTCATATCA
7197485 GAGAGGACAC
Statistics
Matches: 153, Mismatches: 17, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
91 63 0.41
92 90 0.59
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.42
Consensus pattern (92 bp):
TCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
TTCATTTCATATCACGTTGCCACGGTA
Found at i:7197485 original size:46 final size:46
Alignment explanation
Indices: 7197213--7197484 Score: 341
Period size: 46 Copynumber: 5.9 Consensus size: 46
7197203 TTTGACATGA
* * * * *
7197213 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATATCACGT
* * * *
7197259 TGCAATGGTATCTTTCAACCATGGTCTTATTC-TTTTATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* * *** *
7197304 TGCCACGGTATCTTTCAACCATGGTCTTATTCATTTCCCGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
*
7197350 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* * *
7197396 TGCTATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
*
7197442 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCA
7197485 GAGAGGACAC
Statistics
Matches: 201, Mismatches: 23, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
44 3 0.01
45 37 0.18
46 161 0.80
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
Found at i:7202013 original size:23 final size:23
Alignment explanation
Indices: 7201959--7202013 Score: 58
Period size: 23 Copynumber: 2.4 Consensus size: 23
7201949 CAGTTGATGT
*
7201959 TATTTTTATTAATTTATAATTAA
1 TATTTTTATTAATTTATAATAAA
** *
7201982 TATAATTATTTATATTATAA-AAA
1 TATTTTTATTAAT-TTATAATAAA
7202005 TATTTTTAT
1 TATTTTTAT
7202014 ATTTAAAATT
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
23 19 0.76
24 6 0.24
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (23 bp):
TATTTTTATTAATTTATAATAAA
Found at i:7202021 original size:17 final size:19
Alignment explanation
Indices: 7201970--7202022 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 19
7201960 ATTTTTATTA
* *
7201970 ATTTATAATTAATATAATT
1 ATTTATATTTAAAATAATT
7201989 ATTTATATTATAAAA-ATATT
1 ATTTATATT-TAAAATA-ATT
7202009 -TTTATATTTAAAAT
1 ATTTATATTTAAAAT
7202023 TGTGAAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
18 5 0.17
19 17 0.59
20 7 0.24
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
ATTTATATTTAAAATAATT
Found at i:7202415 original size:19 final size:21
Alignment explanation
Indices: 7202388--7202429 Score: 52
Period size: 19 Copynumber: 2.1 Consensus size: 21
7202378 ATAATTTAAT
*
7202388 TTTTTTAAACAAT-T-TAAAA
1 TTTTATAAACAATATGTAAAA
*
7202407 TTTTATAAATAATATGTAAAA
1 TTTTATAAACAATATGTAAAA
7202428 TT
1 TT
7202430 CTAAAATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 11 0.58
20 1 0.05
21 7 0.37
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (21 bp):
TTTTATAAACAATATGTAAAA
Found at i:7213504 original size:132 final size:133
Alignment explanation
Indices: 7213198--7214236 Score: 1258
Period size: 132 Copynumber: 7.9 Consensus size: 133
7213188 AATCTTGGGT
* * * *
7213198 CTACTCCACTACAACTTTAAGGAGCTAGGGTGGTGACTCAAATCTGCTTCACTGCAACATCAGGA
1 CTACTCCACTACAACTTTAGGGAGCTAGGATGGTGACTTAAATCTGCTTCACTGCAACATCAGAA
* * *
7213263 AGCCTAGATCCGCTGTCTTCAATCTGCTCCACTGCAATCTCAGGAAAACAAGATCTACAATCTTC
66 AGCCTAGATTCGCTGTCTTCGATCTGCTCCACTGCAATCTCAGGGAAACAAGATCTACAATCTTC
7213328 AAC
131 AAC
* **
7213331 CTACTCCACTACAACTTTAAGGAGCTAGGATGGTGGTTTAAATCTGCTTCACTGCAACATCAGAA
1 CTACTCCACTACAACTTTAGGGAGCTAGGATGGTGACTTAAATCTGCTTCACTGCAACATCAGAA
*
7213396 AGCCTAGATTCGCTGTCTTCGATCTGC-CC-CTTGCAATCTCAGGGAAACAAGATCTACAATATT
66 AGCCTAGATTCGCTGTCTTCGATCTGCTCCAC-TGCAATCTCAGGGAAACAAGATCTACAATCTT
*
7213459 CAGC
130 CAAC
* * * * *
7213463 CTACTCCACTACAACCTTAGGGAGCTACGATGGT-AGCTTAAATCTGCTTCGCTGCAACTTTAGG
1 CTACTCCACTACAACTTTAGGGAGCTAGGATGGTGA-CTTAAATCTGCTTCACTGCAACATCA-G
* * * * * * *
7213527 AAA-CCGAGATTCACCGTCTTCGATCTGCT---C--C-A-CT---GGAGACGAGGTCTGCAATCT
64 AAAGCCTAGATTCGCTGTCTTCGATCTGCTCCACTGCAATCTCAGGGAAACAAGATCTACAATCT
****
7213581 TGGGT
129 TCAAC
* *
7213586 CTACTCCACTACAACTTTAGGGAGCTAGGGTGGTGACTTAAATCTGCTTCGCTGCAACATCAAGA
1 CTACTCCACTACAACTTTAGGGAGCTAGGATGGTGACTTAAATCTGCTTCACTGCAACATC-AGA
* * **
7213651 AA-CCTAGATCCGCCGTCTTTAATCTGCTCCACTGCAATCTCAGGGAAACAAGATCTACAATCTT
65 AAGCCTAGATTCGCTGTCTTCGATCTGCTCCACTGCAATCTCAGGGAAACAAGATCTACAATCTT
7213715 CAAC
130 CAAC
* * * *
7213719 TTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGCAATATCAGGA
1 CTACTCCACTACAACTTTAGGGAGCTAGGATGGTGACTTAAATCTGCTTCACTGCAACATCAGAA
* * *
7213784 AGCCTAGATCCGCTGTCTTCGATCTGCTCCACTACAATCTCAGGAAAACAAGATCTACAATCTTC
66 AGCCTAGATTCGCTGTCTTCGATCTGCTCCACTGCAATCTCAGGGAAACAAGATCTACAATCTTC
7213849 AAC
131 AAC
** *
7213852 CTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGTTTAAATCTGCTTCACTGCAACATCAGGA
1 CTACTCCACTACAACTTTAGGGAGCTAGGATGGTGACTTAAATCTGCTTCACTGCAACATCAGAA
7213917 AGCCTAGATTCGCTGTCTTCGATCTGC-CC-CTTGCAATCTCAGGGAAACAAGATCTACAATCTT
66 AGCCTAGATTCGCTGTCTTCGATCTGCTCCAC-TGCAATCTCAGGGAAACAAGATCTACAATCTT
7213980 CAAC
130 CAAC
* * * * * *
7213984 CTACTCTACTACAACTTCAGGGAGCTAGGTTAGTGACTTAAATCTGTTTCACTGCAACTTCAGAA
1 CTACTCCACTACAACTTTAGGGAGCTAGGATGGTGACTTAAATCTGCTTCACTGCAACATCAGAA
* * * **
7214049 AGTCAAGATTCG-TCGTCTTCGATCTACTCCACTGCAA-CTTCAGGGAAACAAGATCTGTAAT-T
66 AGCCTAGATTCGCT-GTCTTCGATCTGCTCCACTGCAATC-TCAGGGAAACAAGATCTACAATCT
7214111 TCAAC
129 TCAAC
* * * * * *
7214116 CTACTCCACTACAACTTTAGGGAGCTAGGTTAGTGACTTAAATCTGCTTTACTGCAGCTTCAGGA
1 CTACTCCACTACAACTTTAGGGAGCTAGGATGGTGACTTAAATCTGCTTCACTGCAACATCAGAA
* * * *
7214181 AGTCAAGATTC-ATCGTCTTCGATCTACTCCACTGCAA-CTTCAGGGAAACAAGATCT
66 AGCCTAGATTCGCT-GTCTTCGATCTGCTCCACTGCAATC-TCAGGGAAACAAGATCT
7214237 GTAGGATTCG
Statistics
Matches: 799, Mismatches: 84, Indels: 47
0.86 0.09 0.05
Matches are distributed among these distances:
123 96 0.12
124 2 0.00
126 3 0.00
127 1 0.00
128 2 0.00
129 1 0.00
130 2 0.00
131 4 0.01
132 349 0.44
133 338 0.42
134 1 0.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.27
Consensus pattern (133 bp):
CTACTCCACTACAACTTTAGGGAGCTAGGATGGTGACTTAAATCTGCTTCACTGCAACATCAGAA
AGCCTAGATTCGCTGTCTTCGATCTGCTCCACTGCAATCTCAGGGAAACAAGATCTACAATCTTC
AAC
Found at i:7214233 original size:45 final size:44
Alignment explanation
Indices: 7213955--7214234 Score: 130
Period size: 45 Copynumber: 6.3 Consensus size: 44
7213945 CCTTGCAATC
* * * *
7213955 TCAGGGAAACAAGATCTACA-ATCTTCAACCTACTCTACTACAACT
1 TCAGGGAAACAAGAT-T-CATGTCTTCAATCTACTCCACTGCAACT
* * * * * ** *
7214000 TCAGGG-AGCTAGGTT-AGTGACTTAAATCTGTTTCACTGCAACT
1 TCAGGGAAACAAGATTCA-TGTCTTCAATCTACTCCACTGCAACT
* *
7214043 TCA--GAAAGTCAAGATTCGTCGTCTTCGATCTACTCCACTGCAACT
1 TCAGGGAAA--CAAGATTCAT-GTCTTCAATCTACTCCACTGCAACT
* * *
7214088 TCAGGGAAACAAGA-TC-TGTAATTTCAACCTACTCCACTACAACT
1 TCAGGGAAACAAGATTCATGT--CTTCAATCTACTCCACTGCAACT
* * * * * * * ** *
7214132 TTAGGG-AGCTAGGTT-AGTGACTTAAATCTGCTTTACTGCAGCT
1 TCAGGGAAACAAGATTCA-TGTCTTCAATCTACTCCACTGCAACT
* *
7214175 TCA-GGAAGTCAAGATTCATCGTCTTCGATCTACTCCACTGCAACT
1 TCAGGGAA-ACAAGATTCAT-GTCTTCAATCTACTCCACTGCAACT
7214220 TCAGGGAAACAAGAT
1 TCAGGGAAACAAGAT
7214235 CTGTAGGATT
Statistics
Matches: 165, Mismatches: 51, Indels: 38
0.65 0.20 0.15
Matches are distributed among these distances:
41 2 0.01
42 5 0.03
43 43 0.26
44 44 0.27
45 63 0.38
46 4 0.02
47 4 0.02
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.28
Consensus pattern (44 bp):
TCAGGGAAACAAGATTCATGTCTTCAATCTACTCCACTGCAACT
Found at i:7220102 original size:20 final size:20
Alignment explanation
Indices: 7220077--7220116 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
7220067 TTAGAAGTAA
7220077 GGCCAACACCGAAATATGGG
1 GGCCAACACCGAAATATGGG
*
7220097 GGCCAACACCGAAATGTGGG
1 GGCCAACACCGAAATATGGG
7220117 CTGGTTGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.25, G:0.33, T:0.10
Consensus pattern (20 bp):
GGCCAACACCGAAATATGGG
Found at i:7228398 original size:30 final size:27
Alignment explanation
Indices: 7228345--7228400 Score: 76
Period size: 30 Copynumber: 2.0 Consensus size: 27
7228335 ATTGTGTATA
*
7228345 TTCTTAATATTATATATTGTATATATT
1 TTCTTAATACTATATATTGTATATATT
7228372 TTCTTAATAACTATATTATATGTATATAT
1 TTCTTAAT-ACTATA-TAT-TGTATATAT
7228401 AGTACATGCG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
27 8 0.32
28 5 0.20
29 3 0.12
30 9 0.36
ACGTcount: A:0.36, C:0.05, G:0.04, T:0.55
Consensus pattern (27 bp):
TTCTTAATACTATATATTGTATATATT
Found at i:7233764 original size:30 final size:31
Alignment explanation
Indices: 7233730--7233791 Score: 99
Period size: 30 Copynumber: 2.0 Consensus size: 31
7233720 ATTTATTTTA
*
7233730 TTGTTAATTTTCTTATTATTTTA-AAGGAAT
1 TTGTTAATTTTCTTATTATTTTAGAAGCAAT
*
7233760 TTGTTAATTTTTTTATTATTTTAGAAGCAAT
1 TTGTTAATTTTCTTATTATTTTAGAAGCAAT
7233791 T
1 T
7233792 GCTTGTTAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 22 0.76
31 7 0.24
ACGTcount: A:0.29, C:0.03, G:0.10, T:0.58
Consensus pattern (31 bp):
TTGTTAATTTTCTTATTATTTTAGAAGCAAT
Found at i:7238471 original size:7 final size:7
Alignment explanation
Indices: 7238459--7238495 Score: 74
Period size: 7 Copynumber: 5.3 Consensus size: 7
7238449 ACCAATATAA
7238459 ATAATAT
1 ATAATAT
7238466 ATAATAT
1 ATAATAT
7238473 ATAATAT
1 ATAATAT
7238480 ATAATAT
1 ATAATAT
7238487 ATAATAT
1 ATAATAT
7238494 AT
1 AT
7238496 GTAGTGTTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (7 bp):
ATAATAT
Found at i:7241889 original size:5 final size:5
Alignment explanation
Indices: 7241875--7241938 Score: 55
Period size: 5 Copynumber: 13.0 Consensus size: 5
7241865 CAATCTTTCT
* *
7241875 TTTTA TTTTTA TTTT- TATTTA -TTT- TTTTC TTTTA TTATT- TATTA
1 TTTTA -TTTTA TTTTA T-TTTA TTTTA TTTTA TTTTA TT-TTA TTTTA
7241919 TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA
7241939 GTTAAATATT
Statistics
Matches: 49, Mismatches: 3, Indels: 13
0.75 0.05 0.20
Matches are distributed among these distances:
4 9 0.18
5 33 0.67
6 7 0.14
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:7241914 original size:20 final size:20
Alignment explanation
Indices: 7241881--7241930 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
7241871 TTCTTTTTAT
*
7241881 TTTTA-TTT-TTATTTATTT
1 TTTTATTTTATTATTTATTA
*
7241899 TTTTCTTTTATTATTTATTA
1 TTTTATTTTATTATTTATTA
7241919 TTTTATTTTATT
1 TTTTATTTTATT
7241931 TTATTTTAGT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
18 4 0.15
19 3 0.11
20 20 0.74
ACGTcount: A:0.18, C:0.02, G:0.00, T:0.80
Consensus pattern (20 bp):
TTTTATTTTATTATTTATTA
Found at i:7243122 original size:118 final size:118
Alignment explanation
Indices: 7242896--7243108 Score: 372
Period size: 118 Copynumber: 1.8 Consensus size: 118
7242886 TATTTTCCAT
* * * *
7242896 GGTTATGAGTACAGCTTAGATCGTGACTGACTGATTAACCGGGGTAGGGTGCTTGGGTTGTCATT
1 GGTTATGAGTACAGCTCAAATCATGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
7242961 CTACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTAGCCGA
66 CTACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTAGCCGA
**
7243014 GGTTATGAGTATGGCTCAAATCATGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
1 GGTTATGAGTACAGCTCAAATCATGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
7243079 CTACTTCGCGTCAAAAGGTTGTGTGACGTG
66 CTACTTCGCGTCAAAAGGTTGTGTGACGTG
7243109 TTGGGTAAAA
Statistics
Matches: 89, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
118 89 1.00
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (118 bp):
GGTTATGAGTACAGCTCAAATCATGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
CTACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTAGCCGA
Found at i:7243266 original size:18 final size:18
Alignment explanation
Indices: 7243239--7243286 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
7243229 GTAAATAAAT
* *
7243239 AATAATAAAATTTAAAAA
1 AATAAAAAAATATAAAAA
7243257 AATAAAAAAA-ATAAAAA
1 AATAAAAAAATATAAAAA
*
7243274 AAGGAAAAAAATA
1 AA-TAAAAAAATA
7243287 AGAGAAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
17 8 0.32
18 16 0.64
19 1 0.04
ACGTcount: A:0.79, C:0.00, G:0.04, T:0.17
Consensus pattern (18 bp):
AATAAAAAAATATAAAAA
Found at i:7243281 original size:17 final size:16
Alignment explanation
Indices: 7243251--7243303 Score: 61
Period size: 17 Copynumber: 3.2 Consensus size: 16
7243241 TAATAAAATT
*
7243251 TAAAAAAATAAAAAAAA
1 TAAAAAAA-GAAAAAAA
7243268 TAAAAAAAGGAAAAAAA
1 TAAAAAAA-GAAAAAAA
* *
7243285 TAAGAGAAGAAAAAAA
1 TAAAAAAAGAAAAAAA
7243301 TAA
1 TAA
7243304 GTACTAATAA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
16 11 0.34
17 21 0.66
ACGTcount: A:0.81, C:0.00, G:0.09, T:0.09
Consensus pattern (16 bp):
TAAAAAAAGAAAAAAA
Found at i:7243296 original size:16 final size:17
Alignment explanation
Indices: 7243261--7243304 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
7243251 TAAAAAAATA
*
7243261 AAAAAAATAAAAAAAGG
1 AAAAAAATAAGAAAAGG
*
7243278 AAAAAAATAAGAGAA-G
1 AAAAAAATAAGAAAAGG
7243294 AAAAAAATAAG
1 AAAAAAATAAG
7243305 TACTAATAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
16 12 0.48
17 13 0.52
ACGTcount: A:0.80, C:0.00, G:0.14, T:0.07
Consensus pattern (17 bp):
AAAAAAATAAGAAAAGG
Found at i:7248261 original size:25 final size:25
Alignment explanation
Indices: 7248207--7248278 Score: 87
Period size: 25 Copynumber: 3.0 Consensus size: 25
7248197 TATTAAACAA
*
7248207 AGAGCACGAATGTGCT-A-AAT-AG
1 AGAGCACTAATGTGCTAATAATCAG
7248229 AGAGCACTAATGTGCTAATAATCAG
1 AGAGCACTAATGTGCTAATAATCAG
* * *
7248254 AGAGCACTGACGTGCTAATTATCAG
1 AGAGCACTAATGTGCTAATAATCAG
7248279 TGAGTGCGCT
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
22 15 0.35
23 1 0.02
24 3 0.07
25 24 0.56
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.22
Consensus pattern (25 bp):
AGAGCACTAATGTGCTAATAATCAG
Found at i:7248427 original size:2 final size:2
Alignment explanation
Indices: 7248420--7248456 Score: 51
Period size: 2 Copynumber: 19.0 Consensus size: 2
7248410 ACATTTTCAC
7248420 AT AT AT AT AT -T CAT A- AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT
7248457 TCCAATTCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
1 2 0.06
2 29 0.91
3 1 0.03
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7251578 original size:50 final size:50
Alignment explanation
Indices: 7251519--7251746 Score: 366
Period size: 50 Copynumber: 4.5 Consensus size: 50
7251509 GACCATGGCA
* * *
7251519 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAAGATAAGTG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
7251569 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* *
7251619 AAAATGATAAGTGATAGCTTCGGCTACACTTATCTAATCAAGGACAAATG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
*
7251669 AAAGTGATAAATGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* * *
7251719 ACAAGTAAAAAGTGGTAGCTTCGGCTAC
1 A-AAGTGATAAGTGATAGCTTCGGCTAC
7251747 CTGATTATCG
Statistics
Matches: 165, Mismatches: 12, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
50 143 0.87
51 22 0.13
ACGTcount: A:0.37, C:0.16, G:0.21, T:0.26
Consensus pattern (50 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
Found at i:7251799 original size:31 final size:31
Alignment explanation
Indices: 7251755--7251830 Score: 107
Period size: 31 Copynumber: 2.5 Consensus size: 31
7251745 ACCTGATTAT
* *
7251755 CGGCTACTTGATCAGTGAAAAATGGTAGCTC
1 CGGCTACCTGATCAATGAAAAATGGTAGCTC
* * *
7251786 CGGCTACCCGATCAATGAAAAGTGGTAGCTT
1 CGGCTACCTGATCAATGAAAAATGGTAGCTC
7251817 CGGCTACCTGATCA
1 CGGCTACCTGATCA
7251831 TCAGCTACTT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.28, C:0.24, G:0.25, T:0.24
Consensus pattern (31 bp):
CGGCTACCTGATCAATGAAAAATGGTAGCTC
Found at i:7251838 original size:46 final size:46
Alignment explanation
Indices: 7251788--7251876 Score: 117
Period size: 46 Copynumber: 1.9 Consensus size: 46
7251778 GGTAGCTCCG
*
7251788 GCTACCCGATCAATGAAAAGTGGTAGCT-TCGGCTACCTGATCATCA
1 GCTACCCGATCAATGAAAAATGGTAGCTCT-GGCTACCTGATCATCA
** * *
7251834 GCTACTTGATTAGTGAAAAATGGTAGCTCTGGCTACCTGATCA
1 GCTACCCGATCAATGAAAAATGGTAGCTCTGGCTACCTGATCA
7251877 GTGAATAGTG
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
46 36 0.97
47 1 0.03
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.27
Consensus pattern (46 bp):
GCTACCCGATCAATGAAAAATGGTAGCTCTGGCTACCTGATCATCA
Found at i:7251853 original size:77 final size:77
Alignment explanation
Indices: 7251726--7251900 Score: 278
Period size: 77 Copynumber: 2.3 Consensus size: 77
7251716 ATGACAAGTA
* *
7251726 AAAAGTGGTAGCTTCGGCTACCTGATTATCGGCTACTTGATCAGTGAAAAATGGTAGCTCCGGCT
1 AAAAGTGGTAGCTTCGGCTACCTGATCATCAGCTACTTGATCAGTGAAAAATGGTAGCTCCGGCT
7251791 ACCCGATCAATG
66 ACCCGATCAATG
* *
7251803 AAAAGTGGTAGCTTCGGCTACCTGATCATCAGCTACTTGATTAGTGAAAAATGGTAGCTCTGGCT
1 AAAAGTGGTAGCTTCGGCTACCTGATCATCAGCTACTTGATCAGTGAAAAATGGTAGCTCCGGCT
* *
7251868 ACCTGATCAGTG
66 ACCCGATCAATG
* *
7251880 AATAGTGGTAGCTTCAGCTAC
1 AAAAGTGGTAGCTTCGGCTAC
7251901 AAGTGACAAG
Statistics
Matches: 90, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
77 90 1.00
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (77 bp):
AAAAGTGGTAGCTTCGGCTACCTGATCATCAGCTACTTGATCAGTGAAAAATGGTAGCTCCGGCT
ACCCGATCAATG
Found at i:7251880 original size:31 final size:31
Alignment explanation
Indices: 7251834--7251892 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
7251824 CTGATCATCA
* *
7251834 GCTACTTGATTAGTGAAAAATGGTAGCTCTG
1 GCTACCTGATCAGTGAAAAATGGTAGCTCTG
* *
7251865 GCTACCTGATCAGTGAATAGTGGTAGCT
1 GCTACCTGATCAGTGAAAAATGGTAGCT
7251893 TCAGCTACAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (31 bp):
GCTACCTGATCAGTGAAAAATGGTAGCTCTG
Found at i:7251900 original size:31 final size:30
Alignment explanation
Indices: 7251831--7251900 Score: 77
Period size: 31 Copynumber: 2.3 Consensus size: 30
7251821 TACCTGATCA
* *
7251831 TCAGCTACTTGATTAGTGAAAAATGGTAGC
1 TCAGCTACCTGATCAGTGAAAAATGGTAGC
* * *
7251861 TCTGGCTACCTGATCAGTGAATAGTGGTAGC
1 TC-AGCTACCTGATCAGTGAAAAATGGTAGC
7251892 TTCAGCTAC
1 -TCAGCTAC
7251901 AAGTGACAAG
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
30 2 0.06
31 28 0.88
32 2 0.06
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (30 bp):
TCAGCTACCTGATCAGTGAAAAATGGTAGC
Found at i:7257879 original size:31 final size:31
Alignment explanation
Indices: 7257844--7257906 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
7257834 AGAATGAGAA
7257844 AAAAAATTTGATTTTATACATATATGGAACG
1 AAAAAATTTGATTTTATACATATATGGAACG
7257875 AAAAAATTTGATTTTATACATATATGGAACG
1 AAAAAATTTGATTTTATACATATATGGAACG
7257906 A
1 A
7257907 CGCCGTTCTG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.46, C:0.06, G:0.13, T:0.35
Consensus pattern (31 bp):
AAAAAATTTGATTTTATACATATATGGAACG
Found at i:7272896 original size:62 final size:61
Alignment explanation
Indices: 7272830--7273232 Score: 285
Period size: 62 Copynumber: 7.0 Consensus size: 61
7272820 GGCACCAGTA
* *
7272830 TTTAAAAAAAATTTAAATTTTTTTGGTGCTAGCCTGTCAATGGCCTGCACTAGAATACGAGT
1 TTTAAAAAAAA-TTAAATTTTTTTGGTGCTAGCCTGTCAATGGCCGGCACCAGAATACGAGT
* * *
7272892 TTT-AAAAAAA-T--A----TTTGGTGCTGGCCAGTCAATGGACGGCACCAG--T---A--
1 TTTAAAAAAAATTAAATTTTTTTGGTGCTAGCCTGTCAATGGCCGGCACCAGAATACGAGT
* ** *
7272938 -TTAAAAAAAATCAAATTTTTTTGGTGCTAGCCTGTCAATGGTTGGCACCACAATACGAGT
1 TTTAAAAAAAATTAAATTTTTTTGGTGCTAGCCTGTCAATGGCCGGCACCAGAATACGAGT
* * * * *
7272998 TTTCAAAAAAA--AAA-----TTGTTGCTAGTCTGTCAATGGCCGACACCAAAATACGAGTT
1 TTTAAAAAAAATTAAATTTTTTTGGTGCTAGCCTGTCAATGGCCGGCACCAGAATACGAG-T
* * * *
7273053 TTTAAAAAAAATTCAATTTTTTTTGTGCTGGCCTGTCAATGGCCGGCACCAGAATACGATTT
1 TTTAAAAAAAATTAAATTTTTTTGGTGCTAGCCTGTCAATGGCCGGCACCAGAATACGA-GT
* * * *
7273115 TTTTAAAAAAATTAATTTTTTTTGGTG-TTGACTTGTCAATGGCCGGCA-C----T---AGT
1 TTTAAAAAAAATTAAATTTTTTTGGTGCTAG-CCTGTCAATGGCCGGCACCAGAATACGAGT
* * * * * *
7273168 ATTAAAAAAAATTCAAAATTTTTTGTTGCTGGCCTGTCAATGGCTGGCACCAGAATACAAGT
1 TTTAAAAAAAATT-AAATTTTTTTGGTGCTAGCCTGTCAATGGCCGGCACCAGAATACGAGT
7273230 TTT
1 TTT
7273233 TTTAAAAAAA
Statistics
Matches: 262, Mismatches: 43, Indels: 72
0.69 0.11 0.19
Matches are distributed among these distances:
45 2 0.01
46 7 0.03
48 1 0.00
49 1 0.00
51 1 0.00
53 66 0.25
54 60 0.23
55 15 0.06
57 4 0.02
58 1 0.00
59 5 0.02
61 19 0.07
62 80 0.31
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.33
Consensus pattern (61 bp):
TTTAAAAAAAATTAAATTTTTTTGGTGCTAGCCTGTCAATGGCCGGCACCAGAATACGAGT
Found at i:7276255 original size:22 final size:21
Alignment explanation
Indices: 7276220--7276291 Score: 58
Period size: 21 Copynumber: 3.3 Consensus size: 21
7276210 TAAATGAAAT
7276220 AAAATTAGATAAATT-CTATGAGAA
1 AAAATT-GATAAATTAC-ATG-G-A
7276244 AAAATTGA-AAATTACATGGA
1 AAAATTGATAAATTACATGGA
* * *
7276264 AAAATTGATCATTTAAATGGA
1 AAAATTGATAAATTACATGGA
*
7276285 AAGATTG
1 AAAATTG
7276292 GTCATTTAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
20 9 0.21
21 16 0.38
22 8 0.19
23 3 0.07
24 6 0.14
ACGTcount: A:0.51, C:0.04, G:0.15, T:0.29
Consensus pattern (21 bp):
AAAATTGATAAATTACATGGA
Found at i:7276283 original size:21 final size:21
Alignment explanation
Indices: 7276259--7276303 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
7276249 TGAAAATTAC
7276259 ATGGAAAAATTGATCATTTAA
1 ATGGAAAAATTGATCATTTAA
* *
7276280 ATGGAAAGATTGGTCATTTAA
1 ATGGAAAAATTGATCATTTAA
7276301 ATG
1 ATG
7276304 AAATGAGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.42, C:0.04, G:0.20, T:0.33
Consensus pattern (21 bp):
ATGGAAAAATTGATCATTTAA
Found at i:7276446 original size:26 final size:26
Alignment explanation
Indices: 7276407--7276488 Score: 112
Period size: 26 Copynumber: 3.0 Consensus size: 26
7276397 AAATTGAAAG
*
7276407 AAAAATAAATTTAAATGAAATGAGGAA
1 AAAAATTAA-TTAAATGAAATGAGGAA
7276434 AAAAATTAATTAAAATGAAATGA-GAA
1 AAAAATTAATT-AAATGAAATGAGGAA
7276460 AAAAATTAAATTAAATGAAATGAGAGAA
1 AAAAATT-AATTAAATGAAATGAG-GAA
7276488 A
1 A
7276489 CTTTTAATTT
Statistics
Matches: 50, Mismatches: 1, Indels: 7
0.86 0.02 0.12
Matches are distributed among these distances:
26 23 0.46
27 23 0.46
28 4 0.08
ACGTcount: A:0.65, C:0.00, G:0.13, T:0.22
Consensus pattern (26 bp):
AAAAATTAATTAAATGAAATGAGGAA
Found at i:7276449 original size:49 final size:51
Alignment explanation
Indices: 7276360--7276477 Score: 122
Period size: 49 Copynumber: 2.4 Consensus size: 51
7276350 TGGCAAAAAT
** * * *
7276360 AAATAAATTGGAATGAAATG-GTACAAAATTTAAATGAAAATTGAAA-GA-A
1 AAATAAATTTAAATGAAATGAGGAAAAAAATTAAATGAAAA-TGAAATGAGA
*
7276409 AAATAAATTTAAATGAAATGAGGAAAAAAATT-AATTAAAATGAAATGAGA
1 AAATAAATTTAAATGAAATGAGGAAAAAAATTAAATGAAAATGAAATGAGA
*
7276459 AAA-AAA-TTAAATTAAATGA
1 AAATAAATTTAAATGAAATGA
7276478 AATGAGAGAA
Statistics
Matches: 59, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
48 17 0.29
49 30 0.51
50 12 0.20
ACGTcount: A:0.61, C:0.01, G:0.14, T:0.25
Consensus pattern (51 bp):
AAATAAATTTAAATGAAATGAGGAAAAAAATTAAATGAAAATGAAATGAGA
Found at i:7276496 original size:53 final size:53
Alignment explanation
Indices: 7276407--7276523 Score: 141
Period size: 53 Copynumber: 2.2 Consensus size: 53
7276397 AAATTGAAAG
7276407 AAAAA-TAAATTTAAATGAAATGAGGAAAAAAATTAATTAAAAT-GAAATGAGAA
1 AAAAATTAAA-TTAAATGAAATGAGGAAAAAAATTAATTAAAATAG-AATGAGAA
*** * *
7276460 AAAAATTAAATTAAATGAAATGA-GAGAAACTTTTAATTTAAATAGTATGAGAA
1 AAAAATTAAATTAAATGAAATGAGGA-AAAAAATTAATTAAAATAGAATGAGAA
7276513 AAAAATTAAAT
1 AAAAATTAAAT
7276524 GGAAAGATAG
Statistics
Matches: 56, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
52 2 0.04
53 49 0.88
54 5 0.09
ACGTcount: A:0.61, C:0.01, G:0.12, T:0.26
Consensus pattern (53 bp):
AAAAATTAAATTAAATGAAATGAGGAAAAAAATTAATTAAAATAGAATGAGAA
Found at i:7276521 original size:26 final size:26
Alignment explanation
Indices: 7276386--7276521 Score: 141
Period size: 27 Copynumber: 5.1 Consensus size: 26
7276376 AATGGTACAA
*
7276386 AATTTAAATGAAAATTGA-AAGAAAAATA
1 AATTTAAATG-AAA-TGAGAA-AAAAATT
7276414 AATTTAAATGAAATGAGGAAAAAAATT
1 AATTTAAATGAAATGA-GAAAAAAATT
*
7276441 AATTAAAATGAAATGAGAAAAAAATT
1 AATTTAAATGAAATGAGAAAAAAATT
* ***
7276467 AAATTAAATGAAATGAGAGAAACTTTT
1 AATTTAAATGAAATGAGA-AAAAAATT
*
7276494 AATTTAAAT-AGTATGAGAAAAAAATT
1 AATTTAAATGA-AATGAGAAAAAAATT
7276520 AA
1 AA
7276522 ATGGAAAGAT
Statistics
Matches: 92, Mismatches: 12, Indels: 10
0.81 0.11 0.09
Matches are distributed among these distances:
26 37 0.40
27 43 0.47
28 12 0.13
ACGTcount: A:0.60, C:0.01, G:0.12, T:0.26
Consensus pattern (26 bp):
AATTTAAATGAAATGAGAAAAAAATT
Found at i:7276674 original size:42 final size:44
Alignment explanation
Indices: 7276588--7276675 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 44
7276578 ATAGAACATT
* *
7276588 TAAATGAGATGAGGAAAAAATTAAAATTAAAATTAAAAATAATA
1 TAAATGAGATGAGGAAAAAAATAAAATTAAAATGAAAAATAATA
*
7276632 TAAATGA-ATTGA-GAAAAAAAT-AAATTAGAATGGAAAAA-AATA
1 TAAATGAGA-TGAGGAAAAAAATAAAATTAAAAT-GAAAAATAATA
7276674 TA
1 TA
7276676 TAATATAATT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
42 15 0.38
43 14 0.36
44 10 0.26
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (44 bp):
TAAATGAGATGAGGAAAAAAATAAAATTAAAATGAAAAATAATA
Found at i:7276695 original size:5 final size:5
Alignment explanation
Indices: 7276687--7276780 Score: 57
Period size: 5 Copynumber: 17.6 Consensus size: 5
7276677 AATATAATTT
* * * *
7276687 AAATG AAATAG AAATGG GAATGG AAATG AAATT AGAATG AAACG AAGTTG
1 AAATG AAAT-G AAAT-G AAAT-G AAATG AAATG A-AATG AAATG AA-ATG
*
7276737 AAATG AAAT- AAAGTTG AAATG AAATA AAATG AAAAT- AAATG AAA
1 AAATG AAATG AAA--TG AAATG AAATG AAATG -AAATG AAATG AAA
7276781 AAAAAAGTTT
Statistics
Matches: 70, Mismatches: 11, Indels: 16
0.72 0.11 0.16
Matches are distributed among these distances:
4 7 0.10
5 34 0.49
6 26 0.37
7 3 0.04
ACGTcount: A:0.59, C:0.01, G:0.20, T:0.20
Consensus pattern (5 bp):
AAATG
Found at i:7276741 original size:16 final size:16
Alignment explanation
Indices: 7276722--7276760 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
7276712 ATGAAATTAG
*
7276722 AATGAAACGAAGTTGA
1 AATGAAACAAAGTTGA
*
7276738 AATGAAATAAAGTTGA
1 AATGAAACAAAGTTGA
7276754 AATGAAA
1 AATGAAA
7276761 TAAAATGAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.56, C:0.03, G:0.21, T:0.21
Consensus pattern (16 bp):
AATGAAACAAAGTTGA
Found at i:7276761 original size:16 final size:16
Alignment explanation
Indices: 7276731--7276764 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
7276721 GAATGAAACG
7276731 AAGTTGAAATGAAATA
1 AAGTTGAAATGAAATA
7276747 AAGTTGAAATGAAATA
1 AAGTTGAAATGAAATA
7276763 AA
1 AA
7276765 ATGAAAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.59, C:0.00, G:0.18, T:0.24
Consensus pattern (16 bp):
AAGTTGAAATGAAATA
Found at i:7276772 original size:16 final size:15
Alignment explanation
Indices: 7276735--7276770 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
7276725 GAAACGAAGT
*
7276735 TGAAATGAAATAAAGT
1 TGAAATGAAATAAA-A
7276751 TGAAATGAAATAAAA
1 TGAAATGAAATAAAA
7276766 TGAAA
1 TGAAA
7276771 ATAAATGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.26
16 14 0.74
ACGTcount: A:0.61, C:0.00, G:0.17, T:0.22
Consensus pattern (15 bp):
TGAAATGAAATAAAA
Found at i:7276902 original size:11 final size:11
Alignment explanation
Indices: 7276883--7276962 Score: 63
Period size: 11 Copynumber: 7.3 Consensus size: 11
7276873 CAAACTTTTT
7276883 TTTTCATTTCA
1 TTTTCATTTCA
* *
7276894 TTTTAATTTTA
1 TTTTCATTTCA
7276905 -TTTCATTTCA
1 TTTTCATTTCA
**
7276915 ACTTCATTTCA
1 TTTTCATTTCA
* *
7276926 TTCTAATTTCA
1 TTTTCATTTCA
* *
7276937 TTTACATTCCCA
1 TTTTCATT-TCA
*
7276949 TTTCCATTTCA
1 TTTTCATTTCA
7276960 TTT
1 TTT
7276963 AAATTATATT
Statistics
Matches: 52, Mismatches: 15, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
10 8 0.15
11 35 0.67
12 9 0.17
ACGTcount: A:0.23, C:0.20, G:0.00, T:0.57
Consensus pattern (11 bp):
TTTTCATTTCA
Found at i:7276907 original size:16 final size:16
Alignment explanation
Indices: 7276884--7276967 Score: 78
Period size: 16 Copynumber: 5.1 Consensus size: 16
7276874 AAACTTTTTT
7276884 TTTCATTTCATTTTAA
1 TTTCATTTCATTTTAA
* *
7276900 TTTTATTTCATTTCAA
1 TTTCATTTCATTTTAA
* *
7276916 CTTCATTTCATTCTAA
1 TTTCATTTCATTTTAA
***
7276932 TTTCATTTACATTCCCA
1 TTTCATTT-CATTTTAA
*
7276949 TTTCCATTTCATTTAAA
1 TTT-CATTTCATTTTAA
7276966 TT
1 TT
7276968 ATATTTTTTT
Statistics
Matches: 54, Mismatches: 12, Indels: 3
0.78 0.17 0.04
Matches are distributed among these distances:
16 33 0.61
17 16 0.30
18 5 0.09
ACGTcount: A:0.25, C:0.19, G:0.00, T:0.56
Consensus pattern (16 bp):
TTTCATTTCATTTTAA
Found at i:7276923 original size:21 final size:21
Alignment explanation
Indices: 7276879--7276923 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
7276869 TTGTCAAACT
* **
7276879 TTTTTTTTCATTTCATTTTAA
1 TTTTATTTCATTTCAACTTAA
*
7276900 TTTTATTTCATTTCAACTTCA
1 TTTTATTTCATTTCAACTTAA
7276921 TTT
1 TTT
7276924 CATTCTAATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.20, C:0.13, G:0.00, T:0.67
Consensus pattern (21 bp):
TTTTATTTCATTTCAACTTAA
Found at i:7276957 original size:6 final size:5
Alignment explanation
Indices: 7276884--7276962 Score: 59
Period size: 5 Copynumber: 14.6 Consensus size: 5
7276874 AAACTTTTTT
* * * *
7276884 TTTCA TTTCA TTTTAA TTTTA TTTCA TTTCAA CTTCA TTTCA TTCTAA
1 TTTCA TTTCA -TTTCA TTTCA TTTCA TTTC-A TTTCA TTTCA TT-TCA
*
7276932 TTTCA TTTACA TTCCCA TTTCCA TTTCA TTT
1 TTTCA TTT-CA TT-TCA TTT-CA TTTCA TTT
7276963 AAATTATATT
Statistics
Matches: 59, Mismatches: 9, Indels: 12
0.74 0.11 0.15
Matches are distributed among these distances:
5 34 0.58
6 25 0.42
ACGTcount: A:0.23, C:0.20, G:0.00, T:0.57
Consensus pattern (5 bp):
TTTCA
Found at i:7276980 original size:22 final size:21
Alignment explanation
Indices: 7276955--7277042 Score: 59
Period size: 22 Copynumber: 4.0 Consensus size: 21
7276945 CCCATTTCCA
7276955 TTTCATTTAAATTATATTTTTT
1 TTTCATTTAAATT-TATTTTTT
**
7276977 TTTCAATTCCAATTTATTTTTT
1 TTTC-ATTTAAATTTATTTTTT
* * * * *
7276999 TCTCAATTCAGTTATATTATTT
1 TTTCATTTAAATT-TATTTTTT
** *
7277021 TTAAATTTAAATTTAATTTTT
1 TTTCATTTAAATTTATTTTTT
7277042 T
1 T
7277043 CCTCATTTCA
Statistics
Matches: 49, Mismatches: 15, Indels: 5
0.71 0.22 0.07
Matches are distributed among these distances:
21 13 0.27
22 29 0.59
23 7 0.14
ACGTcount: A:0.28, C:0.08, G:0.01, T:0.62
Consensus pattern (21 bp):
TTTCATTTAAATTTATTTTTT
Found at i:7277152 original size:26 final size:27
Alignment explanation
Indices: 7277125--7277231 Score: 128
Period size: 27 Copynumber: 4.0 Consensus size: 27
7277115 CTTTCTATTT
*
7277125 AATTTTTTTCTCA-TACTATTTAAATTAA
1 AATTTTTTTCTCATTTC-ATTTAAATT-A
* * *
7277153 AAGTTTTCTCTCATTTCATTT-AATTT
1 AATTTTTTTCTCATTTCATTTAAATTA
*
7277179 AATTTTTTTCTCATTTCATTTCAATTA
1 AATTTTTTTCTCATTTCATTTAAATTA
*
7277206 AATTTTTTCCTCATTTCATTTAAATT
1 AATTTTTTTCTCATTTCATTTAAATT
7277232 TATCTTTCTT
Statistics
Matches: 68, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 19 0.28
27 32 0.47
28 15 0.22
29 2 0.03
ACGTcount: A:0.28, C:0.14, G:0.01, T:0.57
Consensus pattern (27 bp):
AATTTTTTTCTCATTTCATTTAAATTA
Found at i:7277205 original size:54 final size:54
Alignment explanation
Indices: 7277121--7277233 Score: 158
Period size: 54 Copynumber: 2.1 Consensus size: 54
7277111 CTATCTTTCT
7277121 ATTTAATTTTTTTCTCATACTATTTAAATTAAAAGTTTTCTCTCATTTCATTT-A
1 ATTTAATTTTTTTCTCATACTATTTAAATTAAAAGTTTTC-CTCATTTCATTTAA
* * **
7277175 ATTTAATTTTTTTCTCAT-TTCATTTCAATTAAATTTTTTCCTCATTTCATTTAA
1 ATTTAATTTTTTTCTCATACT-ATTTAAATTAAAAGTTTTCCTCATTTCATTTAA
7277229 ATTTA
1 ATTTA
7277234 TCTTTCTTTC
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
53 13 0.25
54 40 0.75
ACGTcount: A:0.28, C:0.13, G:0.01, T:0.58
Consensus pattern (54 bp):
ATTTAATTTTTTTCTCATACTATTTAAATTAAAAGTTTTCCTCATTTCATTTAA
Found at i:7277274 original size:49 final size:49
Alignment explanation
Indices: 7277196--7277307 Score: 129
Period size: 48 Copynumber: 2.3 Consensus size: 49
7277186 TTCTCATTTC
* * * *
7277196 ATTTCAATTAAATTTTTTCCTCATTTCATTTAAATTTATCTTTCTTT-CA
1 ATTTCATTTAAATTTTGTACTCATTTCATTCAAATTTAT-TTTCTTTGCA
* * *
7277245 ATTTTCATTTAAATTTTGTAC-CATTTCATTCCAATTTATTTTTTTTGCC
1 A-TTTCATTTAAATTTTGTACTCATTTCATTCAAATTTATTTTCTTTGCA
7277294 ATTTCATTTAAATT
1 ATTTCATTTAAATT
7277308 ACCAATCTTT
Statistics
Matches: 54, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
48 19 0.35
49 19 0.35
50 16 0.30
ACGTcount: A:0.26, C:0.15, G:0.02, T:0.57
Consensus pattern (49 bp):
ATTTCATTTAAATTTTGTACTCATTTCATTCAAATTTATTTTCTTTGCA
Found at i:7277307 original size:27 final size:25
Alignment explanation
Indices: 7277164--7277304 Score: 103
Period size: 27 Copynumber: 5.5 Consensus size: 25
7277154 AGTTTTCTCT
7277164 CATTTCATTTAATTTAATTTTTTTC
1 CATTTCATTTAATTTAATTTTTTTC
* *
7277189 TCATTTCATTTCAATTAAATTTTTTCC
1 -CATTTCATTT-AATTTAATTTTTTTC
7277216 TCATTTCATTTAAATTT-ATCTTTCTTTC
1 -CATTTCATTT-AATTTAAT-TTT-TTTC
* * *
7277244 AATTTTCATTT-A---AATTTTGTAC
1 CA-TTTCATTTAATTTAATTTTTTTC
* *
7277266 CATTTCATTCCAATTTATTTTTTTTGC
1 CATTTCATT-TAATTTAATTTTTTT-C
7277293 CATTTCATTTAA
1 CATTTCATTTAA
7277305 ATTACCAATC
Statistics
Matches: 90, Mismatches: 14, Indels: 22
0.71 0.11 0.17
Matches are distributed among these distances:
21 7 0.08
22 3 0.03
23 4 0.04
24 2 0.02
26 21 0.23
27 42 0.47
28 11 0.12
ACGTcount: A:0.25, C:0.16, G:0.01, T:0.58
Consensus pattern (25 bp):
CATTTCATTTAATTTAATTTTTTTC
Found at i:7277371 original size:43 final size:44
Alignment explanation
Indices: 7277273--7277371 Score: 141
Period size: 44 Copynumber: 2.3 Consensus size: 44
7277263 TACCATTTCA
7277273 TTCCAATTT-ATTTTTTTTGCCATTTCATTTAAATTACCAATCTT
1 TTCC-ATTTAATTTTTTTTGCCATTTCATTTAAATTACCAATCTT
* *
7277317 TTTCATGTAATTTTTTTT-CTCATTTCATTTAAATTACCAATC-T
1 TTCCATTTAATTTTTTTTGC-CATTTCATTTAAATTACCAATCTT
7277360 TTCCATTTAATT
1 TTCCATTTAATT
7277372 CCTTATAATT
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
43 15 0.31
44 34 0.69
ACGTcount: A:0.25, C:0.17, G:0.02, T:0.56
Consensus pattern (44 bp):
TTCCATTTAATTTTTTTTGCCATTTCATTTAAATTACCAATCTT
Found at i:7280597 original size:108 final size:107
Alignment explanation
Indices: 7280392--7280825 Score: 501
Period size: 109 Copynumber: 4.0 Consensus size: 107
7280382 GGCCAACACT
* * * * * *
7280392 AATTTTTTTTAAAAAACTCGTATTCTAGTGTCGGT-TATTGACAAGCCAGCAACAAAAAAATTTG
1 AATTTTTTTAAAAAAACTCGTATTCTGGTG-CCGTCCATTGACAGGCCAGCACCAAAAAAATTTG
* * *
7280456 AATTTTTTTAATACTGGTGCCGGCCATTGACAGGCCAGTACCG
65 AATTTTTTTAATACTGGTGCCGACCATTAACAGGCCAGTACCA
* *
7280499 AATTTTTTTAAAAAAACTCGTATTTTGGTGCCGTCCATTGACAGGCAAGCACCAAAAAAATTTGA
1 AATTTTTTTAAAAAAACTCGTATTCTGGTGCCGTCCATTGACAGGCCAGCACCAAAAAAATTTGA
* ** * *
7280564 TTTTTTTTTGTACTTGGTGCCGGCCATTAACAGGTCAGTACCA
66 ATTTTTTTAATAC-TGGTGCCGACCATTAACAGGCCAGTACCA
* * ** * *
7280607 AATTTTTTAAAAAAAAACTCGTATTGTGGTGCCAACCATTGACAGGCCAGCACAAAAAAAAATTA
1 AATTTTTT-TAAAAAAACTCGTATTCTGGTGCCGTCCATTGACAGGCCAGCAC-CAAAAAAATTT
* ** * * * *
7280672 AAATTTTTTTAATACTGGTGTTGACCATTGACTGGCTAGCACCA
64 GAATTTTTTTAATACTGGTGCCGACCATTAACAGGCCAGTACCA
* * * * *
7280716 AATTTTTTTTAAAAAAACTCGTATTCTGGTGCAGGCAATTGACAGGCCAGCATCAAAAAATTTTG
1 AA-TTTTTTTAAAAAAACTCGTATTCTGGTGCCGTCCATTGACAGGCCAGCACCAAAAAAATTTG
*
7280781 AATTTTTTTAATACTGGTGCCGACCATTAACAGGCCAGCACCA
65 AATTTTTTTAATACTGGTGCCGACCATTAACAGGCCAGTACCA
7280824 AA
1 AA
7280826 AAAATTTGAA
Statistics
Matches: 273, Mismatches: 49, Indels: 9
0.82 0.15 0.03
Matches are distributed among these distances:
106 3 0.01
107 63 0.23
108 82 0.30
109 99 0.36
110 26 0.10
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Consensus pattern (107 bp):
AATTTTTTTAAAAAAACTCGTATTCTGGTGCCGTCCATTGACAGGCCAGCACCAAAAAAATTTGA
ATTTTTTTAATACTGGTGCCGACCATTAACAGGCCAGTACCA
Found at i:7280702 original size:217 final size:216
Alignment explanation
Indices: 7280428--7280825 Score: 555
Period size: 217 Copynumber: 1.8 Consensus size: 216
7280418 AGTGTCGGTT
* ** *
7280428 ATTGACAAGCCAGCAACAAAAAAATTTGAATTTTTTTAATACTGGTGCCGGCCATTGACAGGCCA
1 ATTGACAAGCCAGCAAAAAAAAAATTAAAATTTTTTTAATACTGGTGCCGACCATTGACAGGCCA
* * * * * *
7280493 GTACCGAA-TTTTTTTAAAAAAACTCGTATTTTGGTGCCGTCCATTGACAGGCAAGCACCAAAAA
66 GCACCAAATTTTTTTTAAAAAAACTCGTATTCTGGTGCAGGCAATTGACAGGCAAGCACCAAAAA
* ** * * *
7280557 AATTTGATTTTTTTTTGTACTTGGTGCCGGCCATTAACAGGTCAGTACCAAATTTTTTAAAAAAA
131 AATTTGAATTTTTTTAATAC-TGGTGCCGACCATTAACAGGCCAGCACCAAATTTTTTAAAAAAA
7280622 AACTCGTATTGTGGTGCCAACC
195 AACTCGTATTGTGGTGCCAACC
* ** * *
7280644 ATTGACAGGCCAGCACAAAAAAAAATTAAAATTTTTTTAATACTGGTGTTGACCATTGACTGGCT
1 ATTGACAAGCCAGCA-AAAAAAAAATTAAAATTTTTTTAATACTGGTGCCGACCATTGACAGGCC
* *
7280709 AGCACCAAATTTTTTTTAAAAAAACTCGTATTCTGGTGCAGGCAATTGACAGGCCAGCATCAAAA
65 AGCACCAAATTTTTTTTAAAAAAACTCGTATTCTGGTGCAGGCAATTGACAGGCAAGCACCAAAA
*
7280774 AATTTTGAATTTTTTTAATACTGGTGCCGACCATTAACAGGCCAGCACCAAA
130 AAATTTGAATTTTTTTAATACTGGTGCCGACCATTAACAGGCCAGCACCAAA
7280826 AAAATTTGAA
Statistics
Matches: 156, Mismatches: 24, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
216 14 0.09
217 76 0.49
218 66 0.42
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (216 bp):
ATTGACAAGCCAGCAAAAAAAAAATTAAAATTTTTTTAATACTGGTGCCGACCATTGACAGGCCA
GCACCAAATTTTTTTTAAAAAAACTCGTATTCTGGTGCAGGCAATTGACAGGCAAGCACCAAAAA
AATTTGAATTTTTTTAATACTGGTGCCGACCATTAACAGGCCAGCACCAAATTTTTTAAAAAAAA
ACTCGTATTGTGGTGCCAACC
Found at i:7280814 original size:53 final size:55
Alignment explanation
Indices: 7280757--7280879 Score: 187
Period size: 55 Copynumber: 2.3 Consensus size: 55
7280747 CAGGCAATTG
* *
7280757 ACAGGCCAGCATCAAAAAATTTTGAA-TTTTTTT-AATACTGGTGCCGACCATTA
1 ACAGGCCAGCACCAAAAAAATTTGAATTTTTTTTAAATACTGGTGCCGACCATTA
*
7280810 ACAGGCCAGCACCAAAAAAATTTGAATTTTTTTTAAATACTGGTGCCGACCATTG
1 ACAGGCCAGCACCAAAAAAATTTGAATTTTTTTTAAATACTGGTGCCGACCATTA
* *
7280865 ACATGTCAGCACCAA
1 ACAGGCCAGCACCAA
7280880 CATTTTTTTT
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
53 24 0.38
54 7 0.11
55 32 0.51
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.28
Consensus pattern (55 bp):
ACAGGCCAGCACCAAAAAAATTTGAATTTTTTTTAAATACTGGTGCCGACCATTA
Found at i:7281363 original size:17 final size:21
Alignment explanation
Indices: 7281329--7281375 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 21
7281319 AATTGATCAA
7281329 ATTTAATTATTAATATTATT-
1 ATTTAATTATTAATATTATTC
7281349 ATTTAATTA-T-A-ATTATTC
1 ATTTAATTATTAATATTATTC
*
7281367 ATTAAATTA
1 ATTTAATTA
7281376 ATTCTAAATC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
17 6 0.24
18 9 0.36
19 1 0.04
20 9 0.36
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (21 bp):
ATTTAATTATTAATATTATTC
Found at i:7281365 original size:20 final size:21
Alignment explanation
Indices: 7281329--7281370 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 21
7281319 AATTGATCAA
7281329 ATTTAATTATTAATATT-ATT
1 ATTTAATTATTAATATTCATT
7281349 ATTTAATTA-TAATTATTCATT
1 ATTTAATTATTAA-TATTCATT
7281370 A
1 A
7281371 AATTAATTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 3 0.15
20 13 0.65
21 4 0.20
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.57
Consensus pattern (21 bp):
ATTTAATTATTAATATTCATT
Found at i:7283784 original size:18 final size:18
Alignment explanation
Indices: 7283755--7283829 Score: 120
Period size: 18 Copynumber: 4.3 Consensus size: 18
7283745 ATAATCTTCA
7283755 ATGATATGCAATCTTAGAT
1 ATGAT-TGCAATCTTAGAT
7283774 ATGATTGCAATCTTAGAT
1 ATGATTGCAATCTTAGAT
7283792 ATGA-T--AATCTTAGAT
1 ATGATTGCAATCTTAGAT
7283807 ATGATTGCAATCTTAGAT
1 ATGATTGCAATCTTAGAT
7283825 ATGAT
1 ATGAT
7283830 ATATAATCTT
Statistics
Matches: 53, Mismatches: 0, Indels: 7
0.88 0.00 0.12
Matches are distributed among these distances:
15 14 0.26
16 1 0.02
17 1 0.02
18 32 0.60
19 5 0.09
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.39
Consensus pattern (18 bp):
ATGATTGCAATCTTAGAT
Found at i:7283806 original size:33 final size:33
Alignment explanation
Indices: 7283764--7283830 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
7283754 AATGATATGC
7283764 AATCTTAGATATGATTGCAATCTTAGATATGAT
1 AATCTTAGATATGATTGCAATCTTAGATATGAT
7283797 AATCTTAGATATGATTGCAATCTTAGATATGAT
1 AATCTTAGATATGATTGCAATCTTAGATATGAT
7283830 A
1 A
7283831 TATAATCTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.37, C:0.09, G:0.15, T:0.39
Consensus pattern (33 bp):
AATCTTAGATATGATTGCAATCTTAGATATGAT
Found at i:7287229 original size:15 final size:14
Alignment explanation
Indices: 7287202--7287231 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7287192 AAGATATTCT
7287202 TTTTCTAAATAAAA
1 TTTTCTAAATAAAA
*
7287216 TTTTCTAAATTAAA
1 TTTTCTAAATAAAA
7287230 TT
1 TT
7287232 GAATCGAGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (14 bp):
TTTTCTAAATAAAA
Found at i:7290530 original size:6 final size:6
Alignment explanation
Indices: 7290509--7290585 Score: 61
Period size: 6 Copynumber: 12.3 Consensus size: 6
7290499 TGTGACCTTC
* *
7290509 AAAGAA AAA-ATA AAA-AA TAAA-AA AAATAA AGAGAA AAAGAA AAAGAA
1 AAAGAA AAAGA-A AAAGAA -AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA
7290556 AAAGGAA AAAGAAA AAAGGAAA AAAGAA AA
1 AAA-GAA AAAG-AA AAA-G-AA AAAGAA AA
7290586 TGGAGAGGCC
Statistics
Matches: 62, Mismatches: 3, Indels: 12
0.81 0.04 0.16
Matches are distributed among these distances:
5 5 0.08
6 38 0.61
7 12 0.19
8 7 0.11
ACGTcount: A:0.82, C:0.00, G:0.14, T:0.04
Consensus pattern (6 bp):
AAAGAA
Found at i:7290558 original size:7 final size:7
Alignment explanation
Indices: 7290509--7290585 Score: 79
Period size: 7 Copynumber: 11.1 Consensus size: 7
7290499 TGTGACCTTC
7290509 AAAGAAA
1 AAAGAAA
*
7290516 AAATAAA
1 AAAGAAA
*
7290523 AAATAAA
1 AAAGAAA
*
7290530 AAA-AAT
1 AAAGAAA
7290536 AAAGAGAA
1 AAAGA-AA
7290544 AAAG-AA
1 AAAGAAA
7290550 AAAG-AA
1 AAAGAAA
*
7290556 AAAGGAA
1 AAAGAAA
7290563 AAAGAAA
1 AAAGAAA
7290570 AAAGGAAA
1 AAA-GAAA
7290578 AAAGAAA
1 AAAGAAA
7290585 A
1 A
7290586 TGGAGAGGCC
Statistics
Matches: 62, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
6 17 0.27
7 33 0.53
8 12 0.19
ACGTcount: A:0.82, C:0.00, G:0.14, T:0.04
Consensus pattern (7 bp):
AAAGAAA
Done.