Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 29 of 255
Found at i:7682202 original size:87 final size:87
Alignment explanation
Indices: 7681987--7682235 Score: 292
Period size: 87 Copynumber: 2.9 Consensus size: 87
7681977 GTCAAAAAGC
* * * * * * ** * * *
7681987 CTTTTTGAAGCATTTTGATAGTTCAAATATCCAACTGAGTG--AAAATGGGAGGGGTTTAATTGC
1 CTTTTTGATGCATTTTGAAAGTTCAAGTACCCAATTGAATGCAAAAAAAGAAGGGGCTTAATTAC
*
7682050 -TTTTTTAAAAAAGTTAAGGGT
66 TTTTTTTGAAAAAGTTAAGGGT
* *
7682071 CTTTTTGATGCATTTTGAAAGTTCAAGTACCCAATTGAGTGCAAAAAAA-AATGGGCTTAATTAC
1 CTTTTTGATGCATTTTGAAAGTTCAAGTACCCAATTGAATGCAAAAAAAGAAGGGGCTTAATTAC
*
7682135 TTTTTTTTGAAAAAGTTTGAGGGT
66 -TTTTTTTGAAAAAG-TTAAGGGT
* *
7682159 CTTTTTGATGTATTTTGAAAGTT-AAGTACCCAATTTAATGCAAAAAAAGAAGGGGCTTAATTAC
1 CTTTTTGATGCATTTTGAAAGTTCAAGTACCCAATTGAATGCAAAAAAAGAAGGGGCTTAATTAC
7682223 TTTTTTTGAAAAA
66 TTTTTTTGAAAAA
7682236 AATTGAGGAC
Statistics
Matches: 142, Mismatches: 17, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
84 36 0.25
85 11 0.08
86 4 0.03
87 48 0.34
88 43 0.30
ACGTcount: A:0.34, C:0.09, G:0.19, T:0.37
Consensus pattern (87 bp):
CTTTTTGATGCATTTTGAAAGTTCAAGTACCCAATTGAATGCAAAAAAAGAAGGGGCTTAATTAC
TTTTTTTGAAAAAGTTAAGGGT
Found at i:7682236 original size:88 final size:87
Alignment explanation
Indices: 7681987--7682236 Score: 285
Period size: 88 Copynumber: 2.9 Consensus size: 87
7681977 GTCAAAAAGC
* * * * * * **** * *
7681987 CTTTTTGAAGCATTTTGATAGTTCAAATATCCAACTGAGTG-AAAATGGGAGGGGTTTAATTGC-
1 CTTTTTGATGCATTTTGAAAGTTCAAGTACCCAATTGAATGCAAAAAAAAAGGGGCTTAATTACT
7682050 TTTTTT-AAAAAAGTTAAGGGT
66 TTTTTTGAAAAAAGTTAAGGGT
* *
7682071 CTTTTTGATGCATTTTGAAAGTTCAAGTACCCAATTGAGTGCAAAAAAAAATGGGCTTAATTACT
1 CTTTTTGATGCATTTTGAAAGTTCAAGTACCCAATTGAATGCAAAAAAAAAGGGGCTTAATTAC-
*
7682136 TTTTTTTG-AAAAAGTTTGAGGGT
65 TTTTTTTGAAAAAAG-TTAAGGGT
* *
7682159 CTTTTTGATGTATTTTGAAAGTT-AAGTACCCAATTTAATGCAAAAAAAGAAGGGGCTTAATTAC
1 CTTTTTGATGCATTTTGAAAGTTCAAGTACCCAATTGAATGCAAAAAAA-AAGGGGCTTAATTAC
7682223 TTTTTTTGAAAAAA
65 TTTTTTTGAAAAAA
7682237 ATTGAGGACT
Statistics
Matches: 142, Mismatches: 17, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
84 36 0.25
85 15 0.11
87 43 0.30
88 48 0.34
ACGTcount: A:0.34, C:0.09, G:0.19, T:0.37
Consensus pattern (87 bp):
CTTTTTGATGCATTTTGAAAGTTCAAGTACCCAATTGAATGCAAAAAAAAAGGGGCTTAATTACT
TTTTTTGAAAAAAGTTAAGGGT
Found at i:7685637 original size:11 final size:11
Alignment explanation
Indices: 7685621--7685646 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
7685611 ATATGATAAC
7685621 ATGTATGCTTA
1 ATGTATGCTTA
7685632 ATGTATGCTTA
1 ATGTATGCTTA
7685643 ATGT
1 ATGT
7685647 CTTAACTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.08, G:0.19, T:0.46
Consensus pattern (11 bp):
ATGTATGCTTA
Found at i:7694412 original size:19 final size:18
Alignment explanation
Indices: 7694390--7694429 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 18
7694380 AGAATAAAAC
7694390 TTATCTACCTAAATAAGAT
1 TTATCTACCTAAATAA-AT
7694409 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
7694427 TTA
1 TTA
7694430 AAATATATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:7698261 original size:43 final size:43
Alignment explanation
Indices: 7698200--7698310 Score: 195
Period size: 43 Copynumber: 2.6 Consensus size: 43
7698190 CCGCTAAAGG
*
7698200 TTTCCCCACAAACGCCGCTAGAGGTCTTGACCTTTAGCGGCGC
1 TTTCCCCACAAACGCCGCTAAAGGTCTTGACCTTTAGCGGCGC
*
7698243 TTTCCCCACAAACGCCGCTAAAGGTCTTTACCTTTAGCGGCGC
1 TTTCCCCACAAACGCCGCTAAAGGTCTTGACCTTTAGCGGCGC
*
7698286 TTTTCCCACAAACGCCGCTAAAGGT
1 TTTCCCCACAAACGCCGCTAAAGGT
7698311 AATGAAATTT
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 65 1.00
ACGTcount: A:0.22, C:0.34, G:0.20, T:0.24
Consensus pattern (43 bp):
TTTCCCCACAAACGCCGCTAAAGGTCTTGACCTTTAGCGGCGC
Found at i:7699600 original size:138 final size:138
Alignment explanation
Indices: 7699352--7699623 Score: 456
Period size: 138 Copynumber: 2.0 Consensus size: 138
7699342 TTTTAAAATT
7699352 TTAAATCAAATAAGTTGCATAATAACATAACAAAGAGAAATGTTAATATAAAACCTAAAAACAAT
1 TTAAATCAAATAAGTTGCATAATAACATAACAAAGAGAAATGTTAATATAAAACCTAAAAACAAT
* * * *
7699417 TTAATTCCAATTTTTAAGGAAATTACATATGGTTCTAAAATTCAAAACAAGTACTCCTA-AAAGC
66 TTAATGCCAATTTTTAAAGAAATTACATATGATTCTAAAATTCAAAACAAGGACTCC-ACAAAGC
7699481 ATCCAGACG
130 ATCCAGACG
* *
7699490 TTAAATCAAATAAGTTGCATAATAACATCACAAAGAGAAATGTTATTATAAAACCTAAAAACAAT
1 TTAAATCAAATAAGTTGCATAATAACATAACAAAGAGAAATGTTAATATAAAACCTAAAAACAAT
* *
7699555 TTAATGCCAATTTTTAAAGAGATTACATATGATTCTAAAATTCAAAACAGGGACTCCACAAAGCA
66 TTAATGCCAATTTTTAAAGAAATTACATATGATTCTAAAATTCAAAACAAGGACTCCACAAAGCA
7699620 TCCA
131 TCCA
7699624 TACATTATTA
Statistics
Matches: 125, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
137 1 0.01
138 124 0.99
ACGTcount: A:0.48, C:0.15, G:0.10, T:0.27
Consensus pattern (138 bp):
TTAAATCAAATAAGTTGCATAATAACATAACAAAGAGAAATGTTAATATAAAACCTAAAAACAAT
TTAATGCCAATTTTTAAAGAAATTACATATGATTCTAAAATTCAAAACAAGGACTCCACAAAGCA
TCCAGACG
Found at i:7701275 original size:14 final size:14
Alignment explanation
Indices: 7701256--7701297 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 14
7701246 TAAATATTAA
7701256 ATTTTTAAGTTTTTT
1 ATTTTTAA-TTTTTT
*
7701271 ATTTTTTATTTTTT
1 ATTTTTAATTTTTT
7701285 ATTTTTTAATTTT
1 A-TTTTTAATTTT
7701298 AAAATTTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 7 0.29
15 17 0.71
ACGTcount: A:0.19, C:0.00, G:0.02, T:0.79
Consensus pattern (14 bp):
ATTTTTAATTTTTT
Found at i:7701282 original size:6 final size:7
Alignment explanation
Indices: 7701265--7701297 Score: 57
Period size: 7 Copynumber: 4.6 Consensus size: 7
7701255 AATTTTTAAG
7701265 TTTTTTA
1 TTTTTTA
7701272 TTTTTTA
1 TTTTTTA
7701279 TTTTTTA
1 TTTTTTA
7701286 TTTTTTAA
1 TTTTTT-A
7701294 TTTT
1 TTTT
7701298 AAAATTTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 20 0.80
8 5 0.20
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTTTTA
Found at i:7701620 original size:7 final size:7
Alignment explanation
Indices: 7701608--7701640 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
7701598 TCATACACTT
7701608 TAAACCC
1 TAAACCC
7701615 TAAACCC
1 TAAACCC
7701622 TAAACCC
1 TAAACCC
7701629 TAAACCC
1 TAAACCC
7701636 TAAAC
1 TAAAC
7701641 TATAATGATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.45, C:0.39, G:0.00, T:0.15
Consensus pattern (7 bp):
TAAACCC
Found at i:7701809 original size:7 final size:7
Alignment explanation
Indices: 7701798--7701841 Score: 61
Period size: 7 Copynumber: 6.3 Consensus size: 7
7701788 CTGAACCATG
7701798 AACCCCT
1 AACCCCT
* *
7701805 CACCCTT
1 AACCCCT
7701812 AACCCCT
1 AACCCCT
7701819 AACCCCT
1 AACCCCT
7701826 AACCCCT
1 AACCCCT
*
7701833 AACACCT
1 AACCCCT
7701840 AA
1 AA
7701842 ATCTTAAACC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.32, C:0.52, G:0.00, T:0.16
Consensus pattern (7 bp):
AACCCCT
Found at i:7702114 original size:29 final size:28
Alignment explanation
Indices: 7702051--7702124 Score: 78
Period size: 29 Copynumber: 2.6 Consensus size: 28
7702041 CAAATACATT
7702051 TAAAACAA-ATATTAAAACAAGAAACAAA
1 TAAAA-AATATATTAAAACAAGAAACAAA
* *
7702079 TAAAAAATGATATTAAAACAATAGACAAA
1 TAAAAAAT-ATATTAAAACAAGAAACAAA
** *
7702108 TTGAAAATATAATAAAA
1 TAAAAAATATATTAAAA
7702125 AGTGATTATA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
27 2 0.05
28 13 0.33
29 24 0.62
ACGTcount: A:0.68, C:0.07, G:0.05, T:0.20
Consensus pattern (28 bp):
TAAAAAATATATTAAAACAAGAAACAAA
Found at i:7702393 original size:41 final size:40
Alignment explanation
Indices: 7702348--7702483 Score: 168
Period size: 41 Copynumber: 3.4 Consensus size: 40
7702338 ATTATATGAC
* *
7702348 TTTTAGCAGCGTTTAATCAAAAGCGCCGCTACTGCTCTGGT
1 TTTTAGCGGCGTTT-ATCAAAAGCGCCGCTAATGCTCTGGT
*
7702389 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCG-TTTATCAAAAGCGCCGCTAATGCTCTGGT
* * *
7702430 TTTTAGCGGCATTTTTGGTAAAA-CGCCGCTAATGCTCT-GT
1 TTTTAGCGGCGTTTAT--CAAAAGCGCCGCTAATGCTCTGGT
7702470 TTTTAGCGGCGTTT
1 TTTTAGCGGCGTTT
7702484 TTGGTAAAAC
Statistics
Matches: 84, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
40 18 0.21
41 59 0.70
42 7 0.08
ACGTcount: A:0.19, C:0.22, G:0.24, T:0.35
Consensus pattern (40 bp):
TTTTAGCGGCGTTTATCAAAAGCGCCGCTAATGCTCTGGT
Found at i:7702485 original size:40 final size:42
Alignment explanation
Indices: 7702366--7702515 Score: 200
Period size: 41 Copynumber: 3.7 Consensus size: 42
7702356 GCGTTTAATC
* ***
7702366 AAAAGCGCCGCTACTGCTCTGGTTTTTAGCGGCG-TTTTACC
1 AAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTTGGT
*
7702407 AAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCATTTTTGGT
1 AAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTTGGT
7702449 AAAA-CGCCGCTAATGCTCT-GTTTTTAGCGGCGTTTTTGGT
1 AAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTTGGT
* * *
7702489 AAAA-CGCCGCTATTGCTCCGTTTTTTA
1 AAAAGCGCCGCTAATGCTCTGGTTTTTA
7702516 TAATTTTTGT
Statistics
Matches: 98, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
40 37 0.38
41 53 0.54
42 8 0.08
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.35
Consensus pattern (42 bp):
AAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTTGGT
Found at i:7702557 original size:12 final size:12
Alignment explanation
Indices: 7702540--7702565 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7702530 TTTTTTTGAT
7702540 AAAACGCCGCTA
1 AAAACGCCGCTA
7702552 AAAACGCCGCTA
1 AAAACGCCGCTA
7702564 AA
1 AA
7702566 GCCCTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAAACGCCGCTA
Found at i:7710101 original size:46 final size:46
Alignment explanation
Indices: 7710049--7710186 Score: 249
Period size: 46 Copynumber: 3.0 Consensus size: 46
7710039 AGTGTGCTCT
7710049 CTGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
7710095 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
7710141 GTGATATGGAATGTGTAACACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
7710187 TAATGAATTA
Statistics
Matches: 88, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 88 1.00
ACGTcount: A:0.36, C:0.15, G:0.25, T:0.24
Consensus pattern (46 bp):
CTGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:7710275 original size:46 final size:47
Alignment explanation
Indices: 7710221--7710381 Score: 236
Period size: 46 Copynumber: 3.5 Consensus size: 47
7710211 TATGAATGTG
*
7710221 TAAGACCATGGTTGAAAGATACCATGGCAACGTGATATG-AAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAAATGAA
***
7710267 TAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAAATGAA
* *
7710314 TAAGACCATGGTTGAAAGATACCATGGCAACATGATA-GAAAACGAG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAAATGAA
* *
7710360 TAAAACCATAGTTGAAAGATAC
1 TAAGACCATGGTTGAAAGATAC
7710382 TATGACATCA
Statistics
Matches: 104, Mismatches: 10, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
46 62 0.60
47 42 0.40
ACGTcount: A:0.43, C:0.14, G:0.23, T:0.19
Consensus pattern (47 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAAATGAA
Found at i:7714306 original size:17 final size:17
Alignment explanation
Indices: 7714284--7714319 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
7714274 CTTAATATCG
*
7714284 AGCAATGCACAACGCCT
1 AGCAATCCACAACGCCT
7714301 AGCAATCCACAACGCCT
1 AGCAATCCACAACGCCT
7714318 AG
1 AG
7714320 ATTTCCTAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.36, C:0.36, G:0.17, T:0.11
Consensus pattern (17 bp):
AGCAATCCACAACGCCT
Found at i:7717020 original size:43 final size:44
Alignment explanation
Indices: 7716952--7717056 Score: 101
Period size: 43 Copynumber: 2.4 Consensus size: 44
7716942 TCCTAGGCAA
*
7716952 GGTCTTATACG-AAATCAC-ATAACAATACCGATGTC-CTAGAAAT
1 GGTCTTATATGTAAA-CACAATAACAATACCGATGTCTC-AGAAAT
* * *
7716995 GGTCTTATATGTAAACACAAT-ACAATGCCTATGTCTCAGACAT
1 GGTCTTATATGTAAACACAATAACAATACCGATGTCTCAGAAAT
* * *
7717038 GATCTTACATGTAATCACA
1 GGTCTTATATGTAAACACA
7717057 TCCCGGTAAT
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
43 46 0.88
44 6 0.12
ACGTcount: A:0.37, C:0.21, G:0.13, T:0.29
Consensus pattern (44 bp):
GGTCTTATATGTAAACACAATAACAATACCGATGTCTCAGAAAT
Found at i:7717853 original size:30 final size:31
Alignment explanation
Indices: 7717819--7717882 Score: 96
Period size: 30 Copynumber: 2.1 Consensus size: 31
7717809 ACTTAACAAG
7717819 CAAATG-ATTCTAAAATAATAAAA-AAATTAA
1 CAAATGCATT-TAAAATAATAAAATAAATTAA
*
7717849 CAAATGCCTTTAAAATAATAAAATAAATTAA
1 CAAATGCATTTAAAATAATAAAATAAATTAA
7717880 CAA
1 CAA
7717883 TAAAATAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
30 19 0.61
31 12 0.39
ACGTcount: A:0.61, C:0.09, G:0.03, T:0.27
Consensus pattern (31 bp):
CAAATGCATTTAAAATAATAAAATAAATTAA
Found at i:7717937 original size:11 final size:11
Alignment explanation
Indices: 7717919--7717958 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
7717909 ACAATAACAA
7717919 CAAAATAATAG
1 CAAAATAATAG
*
7717930 CAACATAATAG
1 CAAAATAATAG
* *
7717941 TAAAATAGTAG
1 CAAAATAATAG
7717952 CAAAATA
1 CAAAATA
7717959 TGGAGAAAAC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.60, C:0.10, G:0.10, T:0.20
Consensus pattern (11 bp):
CAAAATAATAG
Found at i:7722043 original size:129 final size:129
Alignment explanation
Indices: 7721813--7722070 Score: 489
Period size: 129 Copynumber: 2.0 Consensus size: 129
7721803 AACTTTGGCC
*
7721813 CTCATAATTTCCATTAGTTGTTTGGAAAGCTCTGCTATCCCCTAATTGTGAACCACAACCATTAT
1 CTCATAATTTCCATTAGTTGTTTGGAAAGCTCTGCTATCCCCTAATTGTGAACCACAACCATTAC
7721878 CACTCTTTTTTCTTCCATTTGTCAGTTTCTTATAGAGCTTCCAACACGTTTCTCGAGTGTGCCA
66 CACTCTTTTTTCTTCCATTTGTCAGTTTCTTATAGAGCTTCCAACACGTTTCTCGAGTGTGCCA
* *
7721942 CTCATAATTTCCATTAGTTGTTTGGAAAGCTCTGCTATCCTCTAATTGTGAACCACAACCATTGC
1 CTCATAATTTCCATTAGTTGTTTGGAAAGCTCTGCTATCCCCTAATTGTGAACCACAACCATTAC
7722007 CACTCTTTTTTCTTCCATTTGTCAGTTTCTTATAGAGCTTCCAACACGTTTCTCGAGTGTGCCA
66 CACTCTTTTTTCTTCCATTTGTCAGTTTCTTATAGAGCTTCCAACACGTTTCTCGAGTGTGCCA
7722071 ATATTTTTTT
Statistics
Matches: 126, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
129 126 1.00
ACGTcount: A:0.22, C:0.26, G:0.14, T:0.39
Consensus pattern (129 bp):
CTCATAATTTCCATTAGTTGTTTGGAAAGCTCTGCTATCCCCTAATTGTGAACCACAACCATTAC
CACTCTTTTTTCTTCCATTTGTCAGTTTCTTATAGAGCTTCCAACACGTTTCTCGAGTGTGCCA
Found at i:7723127 original size:19 final size:19
Alignment explanation
Indices: 7723103--7723146 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
7723093 TTAGAATATG
*
7723103 AATAAAACTTATTTATCTA
1 AATAAAACTTATTTACCTA
*
7723122 AATAAAATTTATTTACCTA
1 AATAAAACTTATTTACCTA
7723141 AATAAA
1 AATAAA
7723147 TTTAAAATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.52, C:0.09, G:0.00, T:0.39
Consensus pattern (19 bp):
AATAAAACTTATTTACCTA
Found at i:7726851 original size:158 final size:158
Alignment explanation
Indices: 7726563--7726878 Score: 623
Period size: 158 Copynumber: 2.0 Consensus size: 158
7726553 AATGTTAAAA
7726563 TATGAACACATTACAATATATTTTCTATTCTTATCACCCTAGAACAATAATAAAATTTAAAAAAT
1 TATGAACACATTACAATATATTTTCTATTCTTATCACCCTAGAACAATAATAAAATTTAAAAAAT
*
7726628 ATATAGTACCTGGTCAGAATTAAGACGTATTAGTCCAATATATTTCATGTTAACTGTTAATGTGC
66 ATATAGTACCTGGTCAGAATTAAGACGTATTAGTCCAATATATTTCATGCTAACTGTTAATGTGC
7726693 CCCTGTCAACTTCTAACTCAATATTCAC
131 CCCTGTCAACTTCTAACTCAATATTCAC
7726721 TATGAACACATTACAATATATTTTCTATTCTTATCACCCTAGAACAATAATAAAATTTAAAAAAT
1 TATGAACACATTACAATATATTTTCTATTCTTATCACCCTAGAACAATAATAAAATTTAAAAAAT
7726786 ATATAGTACCTGGTCAGAATTAAGACGTATTAGTCCAATATATTTCATGCTAACTGTTAATGTGC
66 ATATAGTACCTGGTCAGAATTAAGACGTATTAGTCCAATATATTTCATGCTAACTGTTAATGTGC
7726851 CCCTGTCAACTTCTAACTCAATATTCAC
131 CCCTGTCAACTTCTAACTCAATATTCAC
7726879 ACTTTTTTCA
Statistics
Matches: 157, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
158 157 1.00
ACGTcount: A:0.37, C:0.19, G:0.09, T:0.35
Consensus pattern (158 bp):
TATGAACACATTACAATATATTTTCTATTCTTATCACCCTAGAACAATAATAAAATTTAAAAAAT
ATATAGTACCTGGTCAGAATTAAGACGTATTAGTCCAATATATTTCATGCTAACTGTTAATGTGC
CCCTGTCAACTTCTAACTCAATATTCAC
Found at i:7732478 original size:17 final size:17
Alignment explanation
Indices: 7732458--7732491 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
7732448 AAATAGATTT
7732458 TTAATTAAAAATTTTAA
1 TTAATTAAAAATTTTAA
*
7732475 TTAATTAAAATTTTTAA
1 TTAATTAAAAATTTTAA
7732492 ACCTAAACCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TTAATTAAAAATTTTAA
Found at i:7733644 original size:30 final size:29
Alignment explanation
Indices: 7733600--7733669 Score: 70
Period size: 29 Copynumber: 2.4 Consensus size: 29
7733590 TTACATTTTG
* *
7733600 TATAGTTTTCTTTATGACTTTATA-AAATTT
1 TATAATTTTTTTTAT-A-TTTATATAAATTT
* *
7733630 TATAATTTTTTTTATATTTCTATATATTT
1 TATAATTTTTTTTATATTTATATAAATTT
*
7733659 TATAATATTTT
1 TATAATTTTTT
7733670 ATGATTTTTA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
28 5 0.15
29 16 0.47
30 13 0.38
ACGTcount: A:0.30, C:0.04, G:0.03, T:0.63
Consensus pattern (29 bp):
TATAATTTTTTTTATATTTATATAAATTT
Found at i:7733693 original size:17 final size:17
Alignment explanation
Indices: 7733636--7733696 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 17
7733626 ATTTTATAAT
* *
7733636 TTTTTTTATATTTCTATA
1 TTTTTATATTTTTCTA-A
* *
7733654 TATTTTATAATATTTTATGA
1 T-TTTTAT-AT-TTTTCTAA
7733674 TTTTTATATTTTTCTAA
1 TTTTTATATTTTTCTAA
7733691 TTTTTA
1 TTTTTA
7733697 ATAAATTTTT
Statistics
Matches: 34, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
17 12 0.35
18 3 0.09
19 11 0.32
20 4 0.12
21 4 0.12
ACGTcount: A:0.26, C:0.03, G:0.02, T:0.69
Consensus pattern (17 bp):
TTTTTATATTTTTCTAA
Found at i:7733713 original size:9 final size:9
Alignment explanation
Indices: 7733626--7733714 Score: 51
Period size: 9 Copynumber: 9.6 Consensus size: 9
7733616 ACTTTATAAA
7733626 ATTTTATAAT
1 ATTTT-TAAT
* *
7733636 TTTTTTTAT
1 ATTTTTAAT
*
7733645 ATTTCTATAT
1 ATTTTTA-AT
7733655 ATTTTATAAT
1 ATTTT-TAAT
7733665 A-TTTT-AT
1 ATTTTTAAT
7733672 GATTTTT-AT
1 -ATTTTTAAT
*
7733681 ATTTTT-CT
1 ATTTTTAAT
7733689 AATTTTTAAT
1 -ATTTTTAAT
7733699 AAATTTTTAAT
1 --ATTTTTAAT
7733710 ATTTT
1 ATTTT
7733715 AAATTTTATT
Statistics
Matches: 64, Mismatches: 8, Indels: 15
0.74 0.09 0.17
Matches are distributed among these distances:
7 2 0.03
8 9 0.14
9 27 0.42
10 14 0.22
11 12 0.19
ACGTcount: A:0.30, C:0.02, G:0.01, T:0.66
Consensus pattern (9 bp):
ATTTTTAAT
Found at i:7735168 original size:14 final size:14
Alignment explanation
Indices: 7735149--7735188 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
7735139 TTGATTGCCA
7735149 GTAAAATGTTTTCC
1 GTAAAATGTTTTCC
* *
7735163 GTAAAATGATTTCT
1 GTAAAATGTTTTCC
*
7735177 GGAAAATGTTTT
1 GTAAAATGTTTT
7735189 ACTTTTCTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (14 bp):
GTAAAATGTTTTCC
Found at i:7735197 original size:20 final size:20
Alignment explanation
Indices: 7735172--7735211 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
7735162 CGTAAAATGA
*
7735172 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
7735192 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
7735212 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:7735201 original size:34 final size:35
Alignment explanation
Indices: 7735157--7735223 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
7735147 CAGTAAAATG
*
7735157 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
7735191 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
7735224 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:7735227 original size:14 final size:15
Alignment explanation
Indices: 7735151--7735227 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
7735141 GATTGCCAGT
* *
7735151 AAAATG-TTTTCCGT
1 AAAATGATTTTCTGG
7735165 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
7735179 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
7735199 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
7735214 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
7735228 TGTTTGATTG
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 25 0.50
15 11 0.22
16 1 0.02
18 1 0.02
20 12 0.24
ACGTcount: A:0.32, C:0.09, G:0.16, T:0.43
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:7735616 original size:26 final size:26
Alignment explanation
Indices: 7735549--7735607 Score: 100
Period size: 26 Copynumber: 2.3 Consensus size: 26
7735539 ATATCAAAAT
*
7735549 TTATAGAGACCAATTTAAAATCTAGA
1 TTATAGAGACCAGTTTAAAATCTAGA
*
7735575 TTATAGAGACCAGTTTAATATCTAGA
1 TTATAGAGACCAGTTTAAAATCTAGA
7735601 TTATAGA
1 TTATAGA
7735608 TTATAGTTTG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.42, C:0.10, G:0.14, T:0.34
Consensus pattern (26 bp):
TTATAGAGACCAGTTTAAAATCTAGA
Found at i:7737723 original size:27 final size:27
Alignment explanation
Indices: 7737685--7737783 Score: 96
Period size: 27 Copynumber: 3.6 Consensus size: 27
7737675 AAATCTTTCT
7737685 AACTATGGACAAGAAACCGATTCACAA
1 AACTATGGACAAGAAACCGATTCACAA
* * *
7737712 AACTATGGACAAGAAACCAATAACATAAA
1 AACTATGGACAAGAAACCGAT-TCA-CAA
*
7737741 GGAACTA---ACCCAGAAACCGATTCACAA
1 --AACTATGGA-CAAGAAACCGATTCACAA
7737768 AACTATGGACAAGAAA
1 AACTATGGACAAGAAA
7737784 ATATACCTTT
Statistics
Matches: 56, Mismatches: 8, Indels: 16
0.70 0.10 0.20
Matches are distributed among these distances:
25 5 0.09
27 28 0.50
28 6 0.11
29 12 0.21
31 5 0.09
ACGTcount: A:0.52, C:0.21, G:0.14, T:0.13
Consensus pattern (27 bp):
AACTATGGACAAGAAACCGATTCACAA
Found at i:7738216 original size:14 final size:14
Alignment explanation
Indices: 7738194--7738224 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
7738184 CACTGGAAAA
*
7738194 TCCGTAAAATATTT
1 TCCGGAAAATATTT
7738208 TCCGGAAAATATTT
1 TCCGGAAAATATTT
7738222 TCC
1 TCC
7738225 ACCAATCAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.19, G:0.10, T:0.39
Consensus pattern (14 bp):
TCCGGAAAATATTT
Found at i:7739097 original size:39 final size:40
Alignment explanation
Indices: 7739015--7739097 Score: 114
Period size: 40 Copynumber: 2.1 Consensus size: 40
7739005 AATTGGTAGG
* * * *
7739015 TTAAAATTATAAATATATAAAAAGTGTTAAGGAGATTTGA
1 TTAAAATTAGAAACATATAAAAAGAGTTAAGGAGATTTAA
*
7739055 TTAAAATTAGATACATATAAAAAGAG-TAAGGAGATTTAA
1 TTAAAATTAGAAACATATAAAAAGAGTTAAGGAGATTTAA
7739094 TTAA
1 TTAA
7739098 CACCCAATCA
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
39 16 0.42
40 22 0.58
ACGTcount: A:0.52, C:0.01, G:0.14, T:0.33
Consensus pattern (40 bp):
TTAAAATTAGAAACATATAAAAAGAGTTAAGGAGATTTAA
Found at i:7740768 original size:18 final size:18
Alignment explanation
Indices: 7740718--7740792 Score: 78
Period size: 18 Copynumber: 4.0 Consensus size: 18
7740708 TTTCATTTAA
*
7740718 TTTTTTCCATTTAAATTT
1 TTTTTTTCATTTAAATTT
*
7740736 ATTTATTTCTCATTTCAATTT
1 -TTT-TTT-TCATTTAAATTT
* *
7740757 TTTTTTTCATTTCAGTTT
1 TTTTTTTCATTTAAATTT
*
7740775 TTGTTTTCATTTAAATTT
1 TTTTTTTCATTTAAATTT
7740793 ATAATTTATT
Statistics
Matches: 48, Mismatches: 6, Indels: 5
0.81 0.10 0.08
Matches are distributed among these distances:
18 26 0.54
19 6 0.12
20 6 0.12
21 10 0.21
ACGTcount: A:0.20, C:0.11, G:0.03, T:0.67
Consensus pattern (18 bp):
TTTTTTTCATTTAAATTT
Found at i:7740825 original size:17 final size:18
Alignment explanation
Indices: 7740779--7740844 Score: 52
Period size: 17 Copynumber: 3.8 Consensus size: 18
7740769 CAGTTTTTGT
*
7740779 TTTCATTTAAATTTATAA
1 TTTCATTTACATTTATAA
*
7740797 TTT-ATTTCCATTTA-AA
1 TTTCATTTACATTTATAA
7740813 CTTTCATTT-CATTTCAT-A
1 -TTTCATTTACATTT-ATAA
7740831 -TTCATTTATCATTT
1 TTTCATTTA-CATTT
7740845 CATTTCATAT
Statistics
Matches: 40, Mismatches: 2, Indels: 12
0.74 0.04 0.22
Matches are distributed among these distances:
16 9 0.22
17 17 0.43
18 14 0.35
ACGTcount: A:0.29, C:0.14, G:0.00, T:0.58
Consensus pattern (18 bp):
TTTCATTTACATTTATAA
Found at i:7740842 original size:23 final size:23
Alignment explanation
Indices: 7740814--7740877 Score: 94
Period size: 23 Copynumber: 2.7 Consensus size: 23
7740804 CCATTTAAAC
7740814 TTTCATTTCATTTCATATTCAT-
1 TTTCATTTCATTTCATATTCATA
7740836 TTATCATTTCATTTCATATTCATA
1 TT-TCATTTCATTTCATATTCATA
7740860 TTTCATTTAACATTTCAT
1 TTTCATTT--CATTTCAT
7740878 TTTATTAATT
Statistics
Matches: 38, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
22 2 0.05
23 26 0.68
24 2 0.05
25 8 0.21
ACGTcount: A:0.27, C:0.17, G:0.00, T:0.56
Consensus pattern (23 bp):
TTTCATTTCATTTCATATTCATA
Found at i:7740844 original size:18 final size:19
Alignment explanation
Indices: 7740821--7740867 Score: 64
Period size: 18 Copynumber: 2.6 Consensus size: 19
7740811 AACTTTCATT
7740821 TCATTTCATATTCAT-TT-A
1 TCATTTCAT-TTCATATTCA
7740839 TCATTTCATTTCATATTCA
1 TCATTTCATTTCATATTCA
7740858 T-ATTTCATTT
1 TCATTTCATTT
7740868 AACATTTCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.19
18 20 0.74
19 2 0.07
ACGTcount: A:0.26, C:0.17, G:0.00, T:0.57
Consensus pattern (19 bp):
TCATTTCATTTCATATTCA
Found at i:7740859 original size:6 final size:5
Alignment explanation
Indices: 7740814--7740879 Score: 60
Period size: 5 Copynumber: 11.6 Consensus size: 5
7740804 CCATTTAAAC
7740814 TTTCA TTTCA TTTCA TATTCA TTTATCA TTTCA TTTCA TATTCATA TTTCA
1 TTTCA TTTCA TTTCA T-TTCA -TT-TCA TTTCA TTTCA T-TTC--A TTTCA
7740865 TTTAACA TTTCA TTT
1 TTT--CA TTTCA TTT
7740880 TATTAATTTT
Statistics
Matches: 53, Mismatches: 0, Indels: 16
0.77 0.00 0.23
Matches are distributed among these distances:
5 29 0.55
6 10 0.19
7 12 0.23
8 2 0.04
ACGTcount: A:0.26, C:0.17, G:0.00, T:0.58
Consensus pattern (5 bp):
TTTCA
Found at i:7740867 original size:30 final size:28
Alignment explanation
Indices: 7740805--7740879 Score: 107
Period size: 30 Copynumber: 2.6 Consensus size: 28
7740795 AATTTATTTC
7740805 CATTTAA-ACTTTCATTTCATTTCATATT
1 CATTTAACA-TTTCATTTCATTTCATATT
*
7740833 CATTTATCATTTCATTTCATATTCATATTT
1 CATTTAACATTTCATTTCAT-TTCATA-TT
7740863 CATTTAACATTTCATTT
1 CATTTAACATTTCATTT
7740880 TATTAATTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
28 17 0.40
29 7 0.17
30 18 0.43
ACGTcount: A:0.28, C:0.17, G:0.00, T:0.55
Consensus pattern (28 bp):
CATTTAACATTTCATTTCATTTCATATT
Found at i:7740910 original size:19 final size:19
Alignment explanation
Indices: 7740880--7740929 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 19
7740870 CATTTCATTT
*
7740880 TATTAATTTTTTCATTTAA-A
1 TATTATTTTTTTC--TTAATA
7740900 T-TTATTTTTTTCTTAATA
1 TATTATTTTTTTCTTAATA
7740918 TATTATTTTTTT
1 TATTATTTTTTT
7740930 TCATATTAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
17 4 0.15
18 2 0.07
19 20 0.74
20 1 0.04
ACGTcount: A:0.26, C:0.04, G:0.00, T:0.70
Consensus pattern (19 bp):
TATTATTTTTTTCTTAATA
Found at i:7740936 original size:81 final size:78
Alignment explanation
Indices: 7740670--7740933 Score: 212
Period size: 81 Copynumber: 3.2 Consensus size: 78
7740660 CTTTCAACTT
* *
7740670 TTATTTTTCCTTTCATTTCATTTTCATTTCCATTTCTATTTCATTTAATTTTTTCCATTTAAATT
1 TTATTTTT--TTTCATTTCATTTTCATTTACATTTC-ATTTTA-TTAATTTTTTCCATTTAAATT
* *
7740735 TATTTATTTCTCATTTCAA
62 TATTTATTTCTAATAT--A
** * * *
7740754 TT-TTTTTTTTCATTTCAGTTTTTGTTTTCATTTAAATTTA-TAATTTATTTCCATTTAAACTTT
1 TTATTTTTTTTCATTTCA-TTTTCATTTACATTTCATTTTATTAATTT-TTTCCATTTAAA-TTT
*
7740817 CATTTCATTTCATATTCAT-
63 -ATTT-ATTTC-TAAT-ATA
*
7740836 TTATCATTTCATTTCATATTCATATTTCATTTAACATTTCATTTTATTAATTTTTT-CATTTAAA
1 TTAT--TTT-TTTTCAT-TTCAT-TTTCATTT-ACATTTCATTTTATTAATTTTTTCCATTTAAA
*
7740900 TTTATTTTTTTCTTAATATA
60 TTTATTTATTTC-TAATATA
7740920 TTATTTTTTTTCAT
1 TTATTTTTTTTCAT
7740934 ATTAATCACA
Statistics
Matches: 145, Mismatches: 19, Indels: 35
0.73 0.10 0.18
Matches are distributed among these distances:
79 6 0.04
80 12 0.08
81 23 0.16
82 21 0.14
83 13 0.09
84 15 0.10
85 8 0.06
86 10 0.07
87 18 0.12
88 13 0.09
89 6 0.04
ACGTcount: A:0.24, C:0.13, G:0.01, T:0.62
Consensus pattern (78 bp):
TTATTTTTTTTCATTTCATTTTCATTTACATTTCATTTTATTAATTTTTTCCATTTAAATTTATT
TATTTCTAATATA
Found at i:7740993 original size:20 final size:21
Alignment explanation
Indices: 7740970--7741017 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
7740960 GTTATCTTTT
7740970 TTCAATTCA-ATTTTTTTCAA
1 TTCAATTCATATTTTTTTCAA
*
7740990 TTCATTTCATATTTTTTTCATA
1 TTCAATTCATATTTTTTTCA-A
7741012 TT-AATT
1 TTCAATT
7741018 AAAAATAGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 8 0.33
21 13 0.54
22 3 0.12
ACGTcount: A:0.27, C:0.12, G:0.00, T:0.60
Consensus pattern (21 bp):
TTCAATTCATATTTTTTTCAA
Found at i:7741266 original size:5 final size:5
Alignment explanation
Indices: 7741256--7741321 Score: 53
Period size: 5 Copynumber: 12.6 Consensus size: 5
7741246 TCTTTCTTTT
* * * *
7741256 TTTCA TTTCA TTTC- TTCCC TTTCA TTTCA TTTGTAA TTCCA TTTCCA
1 TTTCA TTTCA TTTCA TTTCA TTTCA TTTCA -TT-TCA TTTCA TTT-CA
7741303 TTTCCA TTTCA TTTCA TTT
1 TTT-CA TTTCA TTTCA TTT
7741322 AAATTATTTT
Statistics
Matches: 50, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
4 3 0.06
5 30 0.60
6 15 0.30
7 2 0.04
ACGTcount: A:0.17, C:0.24, G:0.02, T:0.58
Consensus pattern (5 bp):
TTTCA
Found at i:7741307 original size:12 final size:11
Alignment explanation
Indices: 7741256--7741321 Score: 52
Period size: 12 Copynumber: 6.3 Consensus size: 11
7741246 TCTTTCTTTT
7741256 TTTCATTT-CA
1 TTTCATTTCCA
*
7741266 TTTC--TTCCC
1 TTTCATTTCCA
7741275 TTTCATTT-CA
1 TTTCATTTCCA
* *
7741285 TTTGTAATTCCA
1 TTT-CATTTCCA
7741297 TTTCCATTTCCA
1 TTT-CATTTCCA
7741309 TTTCATTT-CA
1 TTTCATTTCCA
7741319 TTT
1 TTT
7741322 AAATTATTTT
Statistics
Matches: 44, Mismatches: 7, Indels: 10
0.72 0.11 0.16
Matches are distributed among these distances:
8 2 0.05
9 5 0.11
10 13 0.30
11 10 0.23
12 14 0.32
ACGTcount: A:0.17, C:0.24, G:0.02, T:0.58
Consensus pattern (11 bp):
TTTCATTTCCA
Found at i:7741466 original size:6 final size:5
Alignment explanation
Indices: 7741448--7741513 Score: 51
Period size: 5 Copynumber: 11.6 Consensus size: 5
7741438 TTCATAATCA
*
7741448 TCATT TTATT TCATAT TCATT TAACATT TCATT TCATAT TCATGTT TCATT
1 TCATT TCATT TCAT-T TCATT T--CATT TCATT TCAT-T TCA--TT TCATT
7741499 TAACATT TCATT TCA
1 T--CATT TCATT TCA
7741514 ATATTTTTTT
Statistics
Matches: 51, Mismatches: 2, Indels: 16
0.74 0.03 0.23
Matches are distributed among these distances:
5 27 0.53
6 9 0.18
7 14 0.27
8 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.02, T:0.55
Consensus pattern (5 bp):
TCATT
Found at i:7741497 original size:30 final size:30
Alignment explanation
Indices: 7741463--7741539 Score: 106
Period size: 30 Copynumber: 2.6 Consensus size: 30
7741453 TTATTTCATA
7741463 TTCATTTAACATTTCATTTC-ATATTCATGT
1 TTCATTTAACATTTCATTTCAATATT-ATGT
* *
7741493 TTCATTTAACATTTCATTTCAATATTTTTT
1 TTCATTTAACATTTCATTTCAATATTATGT
7741523 TTCATTTAA-ATTT-ATTT
1 TTCATTTAACATTTCATTT
7741540 TTTTTCTAAT
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
28 4 0.09
29 4 0.09
30 31 0.70
31 5 0.11
ACGTcount: A:0.27, C:0.13, G:0.01, T:0.58
Consensus pattern (30 bp):
TTCATTTAACATTTCATTTCAATATTATGT
Found at i:7741498 original size:23 final size:23
Alignment explanation
Indices: 7741447--7741513 Score: 75
Period size: 23 Copynumber: 2.9 Consensus size: 23
7741437 TTTCATAATC
*
7741447 ATCATTTTATTTCATATTCATTT
1 ATCATTTCATTTCATATTCATTT
*
7741470 AACATTTCATTTCATATTCATGTT
1 ATCATTTCATTTCATATTCAT-TT
7741494 -TCATTTAACATTTCAT-TTCA
1 ATCATTT--CATTTCATATTCA
7741514 ATATTTTTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
23 24 0.63
24 6 0.16
25 8 0.21
ACGTcount: A:0.28, C:0.16, G:0.01, T:0.54
Consensus pattern (23 bp):
ATCATTTCATTTCATATTCATTT
Found at i:7741527 original size:18 final size:18
Alignment explanation
Indices: 7741504--7741567 Score: 58
Period size: 20 Copynumber: 3.3 Consensus size: 18
7741494 TCATTTAACA
7741504 TTTCATTTCAATATTTTT
1 TTTCATTTCAATATTTTT
*
7741522 TTTCATTTAAATTTATTTTT
1 TTTCATTTCAA--TATTTTT
*
7741542 TTTCTAATATACAAT-TTTTT
1 TTTC--AT-TTCAATATTTTT
7741562 TTTCAT
1 TTTCAT
7741568 ATTAATCAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 10
0.75 0.06 0.20
Matches are distributed among these distances:
18 12 0.32
20 20 0.53
21 1 0.03
22 2 0.05
23 3 0.08
ACGTcount: A:0.25, C:0.09, G:0.00, T:0.66
Consensus pattern (18 bp):
TTTCATTTCAATATTTTT
Found at i:7741637 original size:11 final size:11
Alignment explanation
Indices: 7741618--7741647 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
7741608 TTCAATTTTT
7741618 TTTCA-ATTTA
1 TTTCATATTTA
7741628 TTTCATATTTA
1 TTTCATATTTA
7741639 TTTCATATT
1 TTTCATATT
7741648 AATTAAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 5 0.26
11 14 0.74
ACGTcount: A:0.27, C:0.10, G:0.00, T:0.63
Consensus pattern (11 bp):
TTTCATATTTA
Found at i:7742019 original size:22 final size:24
Alignment explanation
Indices: 7741939--7742256 Score: 136
Period size: 26 Copynumber: 13.2 Consensus size: 24
7741929 CATTTCTTCA
* *
7741939 ATTTCATTT-AATT-TGTATTTCC
1 ATTTCATTTAAATTATCTTTTTCC
7741961 ATTTCATTTAAATTATCTTTATTCCC
1 ATTTCATTTAAATTATCTTT-TT-CC
* *
7741987 ATTTTAATTT-AATT-T-TTTTTGTC
1 A-TTTCATTTAAATTATCTTTTT-CC
7742010 ATTTCATTTAAATTAT-TTTTT--
1 ATTTCATTTAAATTATCTTTTTCC
*
7742031 -TTCCATTTAAATCTAAT-TTTGTTCTC
1 ATTTCATTTAAAT-T-ATCTTT-TTC-C
*
7742057 AGTTCATTTAAATTATCTTTCTTCCC
1 ATTTCATTTAAATTATCTTT-TT-CC
* * *
7742083 ATCTTAATTTAAATT-T-TTTATCTT
1 AT-TTCATTTAAATTATCTTTTTC-C
* *
7742107 ATTTCATTTAAATTATTTTTTTCA
1 ATTTCATTTAAATTATCTTTTTCC
* * *
7742131 ATTTAAATTT-AATT-T-TTGTCCTC
1 ATTT-CATTTAAATTATCTTTTTC-C
*
7742154 ATTTCATTCAAATTATC--TTT-C
1 ATTTCATTTAAATTATCTTTTTCC
* *
7742175 -TTTCCATTTTAATTTATTTTTTTCTC
1 ATTT-CA-TTTAAATTATCTTTTTC-C
7742201 ATTTCATTTAAATTTAAT-TTTTTCTC
1 ATTTCATTTAAA-TT-ATCTTTTTC-C
*
7742227 TTTTCATTTAAATTATCTTTCTTTCC
1 ATTTCATTTAAATTATC-TT-TTTCC
7742253 ATTT
1 ATTT
7742257 TAATTTACGT
Statistics
Matches: 228, Mismatches: 31, Indels: 70
0.69 0.09 0.21
Matches are distributed among these distances:
20 14 0.06
21 4 0.02
22 36 0.16
23 36 0.16
24 30 0.13
25 24 0.11
26 46 0.20
27 38 0.17
ACGTcount: A:0.25, C:0.14, G:0.02, T:0.60
Consensus pattern (24 bp):
ATTTCATTTAAATTATCTTTTTCC
Found at i:7742066 original size:47 final size:48
Alignment explanation
Indices: 7741944--7742214 Score: 302
Period size: 47 Copynumber: 5.6 Consensus size: 48
7741934 CTTCAATTTC
* * *
7741944 ATTTAATTTGTATTTC-CATTTCATTTAAATTATCTTTATTCCCATTTTA
1 ATTTAATTT-T-TTTCTCATTTCATTTAAATTATCTTTTTTTCCATTTAA
*
7741993 ATTTAATTTTTTTTGTCATTTCATTTAAATTAT-TTTTTTTCCATTTAA
1 ATTTAA-TTTTTTTCTCATTTCATTTAAATTATCTTTTTTTCCATTTAA
* * * * *
7742041 ATCTAATTTTGTTCTCAGTTCATTTAAATTATCTTTCTTCCCATCTT-A
1 ATTTAATTTTTTTCTCATTTCATTTAAATTATCTTTTTTTCCAT-TTAA
* *
7742089 ATTTAAATTTTTTATCTTATTTCATTTAAATTA--TTTTTTTCAATTTAA
1 ATTT-AATTTTTT-TCTCATTTCATTTAAATTATCTTTTTTTCCATTTAA
* * * *
7742137 ATTTAATTTTTGTCCTCATTTCATTCAAATTATCTTTCTTTCCATTTTA
1 ATTTAATTTTT-TTCTCATTTCATTTAAATTATCTTTTTTTCCATTTAA
7742186 ATTT-ATTTTTTTCTCATTTCATTTAAATT
1 ATTTAATTTTTTTCTCATTTCATTTAAATT
7742215 TAATTTTTTC
Statistics
Matches: 187, Mismatches: 25, Indels: 22
0.80 0.11 0.09
Matches are distributed among these distances:
47 65 0.35
48 53 0.28
49 49 0.26
50 20 0.11
ACGTcount: A:0.25, C:0.13, G:0.02, T:0.59
Consensus pattern (48 bp):
ATTTAATTTTTTTCTCATTTCATTTAAATTATCTTTTTTTCCATTTAA
Found at i:7742122 original size:19 final size:19
Alignment explanation
Indices: 7742100--7742139 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
7742090 TTTAAATTTT
7742100 TTATCTTATTTC-ATTTAAA
1 TTAT-TTATTTCAATTTAAA
*
7742119 TTATTTTTTTCAATTTAAA
1 TTATTTATTTCAATTTAAA
7742138 TT
1 TT
7742140 TAATTTTTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.62
Consensus pattern (19 bp):
TTATTTATTTCAATTTAAA
Found at i:7742167 original size:97 final size:94
Alignment explanation
Indices: 7741960--7742224 Score: 370
Period size: 97 Copynumber: 2.8 Consensus size: 94
7741950 TTTGTATTTC
* *
7741960 CATTTCATTTAAATTATCTTTATTCCCATTTTAATTTAATTTTTTTTGTCATTTCATTTAAATTA
1 CATTTCATTTAAATTATCTTTCTTCCCATTTTAATTTAA-TTTTTTTCTCATTTCATTTAAATTA
* *
7742025 TTTTTTTTCCATTTAAATCTAATTTTGTTCT
65 -TTTTTTTCAATTTAAATCTAATTTTGTCCT
* * *
7742056 CAGTTCATTTAAATTATCTTTCTTCCCATCTTAATTTAAATTTTTTATCTTATTTCATTTAAATT
1 CATTTCATTTAAATTATCTTTCTTCCCATTTTAATTT-AATTTTTT-TCTCATTTCATTTAAATT
*
7742121 ATTTTTTTCAATTTAAATTTAATTTTTGTCCT
64 ATTTTTTTCAATTTAAATCTAA-TTTTGTCCT
* *
7742153 CATTTCATTCAAATTATCTTTCTTTCCATTTTAATTT-ATTTTTTTCTCATTTCATTTAAATTTA
1 CATTTCATTTAAATTATCTTTCTTCCCATTTTAATTTAATTTTTTTCTCATTTCATTTAAA-TTA
*
7742217 ATTTTTTC
65 TTTTTTTC
7742225 TCTTTTCATT
Statistics
Matches: 151, Mismatches: 14, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
94 15 0.10
95 17 0.11
96 59 0.39
97 60 0.40
ACGTcount: A:0.25, C:0.14, G:0.02, T:0.60
Consensus pattern (94 bp):
CATTTCATTTAAATTATCTTTCTTCCCATTTTAATTTAATTTTTTTCTCATTTCATTTAAATTAT
TTTTTTCAATTTAAATCTAATTTTGTCCT
Found at i:7742249 original size:21 final size:22
Alignment explanation
Indices: 7742155--7742261 Score: 65
Period size: 21 Copynumber: 4.6 Consensus size: 22
7742145 TTTGTCCTCA
*
7742155 TTTCATTCAAATTA-TCTTTCT
1 TTTCATTTAAATTATTCTTTCT
* * *
7742176 TTCCATTTTAATTTATTTTTTTCT
1 TTTCA-TTTAAATTA-TTCTTTCT
*
7742200 CATTTCATTTAAATTTAATTTTTTCTCT
1 --TTTCATTTAAA-TT-A-TTCTT-TCT
7742228 TTTCATTTAAATTA-TCTTTCT
1 TTTCATTTAAATTATTCTTTCT
* *
7742249 TTCCATTTTAATT
1 TTTCATTTAAATT
7742262 TACGTTTTTT
Statistics
Matches: 69, Mismatches: 9, Indels: 16
0.73 0.10 0.17
Matches are distributed among these distances:
21 18 0.26
22 10 0.14
24 7 0.10
25 7 0.10
26 17 0.25
27 7 0.10
28 3 0.04
ACGTcount: A:0.22, C:0.15, G:0.00, T:0.63
Consensus pattern (22 bp):
TTTCATTTAAATTATTCTTTCT
Found at i:7742255 original size:73 final size:77
Alignment explanation
Indices: 7742126--7742273 Score: 241
Period size: 73 Copynumber: 2.0 Consensus size: 77
7742116 AAATTATTTT
7742126 TTTCAATTTAAATTTAATTTTTGTCCTCATTTCATTCAAATTATCTTTCTTTCCATTTTAATTTA
1 TTTCAATTTAAATTTAATTTTTGTCCTCATTTCATTCAAATTATCTTTCTTTCCATTTTAATTTA
7742191 -TTTTTTTCTCA
66 CTTTTTTTCTCA
* *
7742202 TTTC-ATTTAAATTTAATTTTT-T-CTCTTTTCATTTAAATTATCTTTCTTTCCATTTTAATTTA
1 TTTCAATTTAAATTTAATTTTTGTCCTCATTTCATTCAAATTATCTTTCTTTCCATTTTAATTTA
7742264 CGTTTTTTTC
66 C-TTTTTTTC
7742274 ATATTAATTT
Statistics
Matches: 68, Mismatches: 2, Indels: 5
0.91 0.03 0.07
Matches are distributed among these distances:
73 38 0.56
74 1 0.01
75 25 0.37
76 4 0.06
ACGTcount: A:0.22, C:0.15, G:0.01, T:0.61
Consensus pattern (77 bp):
TTTCAATTTAAATTTAATTTTTGTCCTCATTTCATTCAAATTATCTTTCTTTCCATTTTAATTTA
CTTTTTTTCTCA
Found at i:7746092 original size:25 final size:25
Alignment explanation
Indices: 7746022--7746092 Score: 72
Period size: 25 Copynumber: 2.8 Consensus size: 25
7746012 CAGCTCTCTT
* *
7746022 GAGCTTCTCGATATTTGGCTCACAA
1 GAGCTTCCCGATATATGGCTCACAA
** * *
7746047 GAGCTTCCCGATATACAGCTCATAT
1 GAGCTTCCCGATATATGGCTCACAA
7746072 GAGCTTCCC-ATTATATGGCTC
1 GAGCTTCCCGA-TATATGGCTC
7746093 GAAAAAGCTT
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
24 1 0.03
25 36 0.97
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (25 bp):
GAGCTTCCCGATATATGGCTCACAA
Found at i:7747304 original size:3 final size:3
Alignment explanation
Indices: 7747298--7747443 Score: 59
Period size: 3 Copynumber: 47.0 Consensus size: 3
7747288 ATAACATGAC
* * * * *
7747298 AAT AAT AAT AAC AGT AGT AAT AAAT AAAT AAAT AAT GAT AAT AAA AAT
1 AAT AAT AAT AAT AAT AAT AAT -AAT -AAT -AAT AAT AAT AAT AAT AAT
* * * *
7747346 AAT AGT AAAT AA- AAT AA- AGAT AA- AATT AAT AAT GAT AGT AACG AAT
1 AAT AAT -AAT AAT AAT AAT A-AT AAT AA-T AAT AAT AAT AAT AA-T AAT
* * *
7747392 -AT AAAT AAT AAT AGT AAA AAT AAT AAT AAT GAT AAT ACA- AATT AAT
1 AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AA-T AAT
7747438 AAT AAT
1 AAT AAT
7747444 GATGATATAA
Statistics
Matches: 108, Mismatches: 22, Indels: 26
0.69 0.14 0.17
Matches are distributed among these distances:
2 8 0.07
3 77 0.71
4 23 0.21
ACGTcount: A:0.63, C:0.02, G:0.07, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:7747377 original size:30 final size:28
Alignment explanation
Indices: 7747315--7747378 Score: 69
Period size: 30 Copynumber: 2.2 Consensus size: 28
7747305 ATAACAGTAG
*
7747315 TAATAA-ATAAATAAATAATGATAATAA
1 TAATAATATAAATAAATAAAGATAATAA
*
7747342 AAATAATAGTAAATAAAATAAAGATAA-AA
1 TAATAATA-TAAAT-AAATAAAGATAATAA
7747371 TTAATAAT
1 -TAATAAT
7747379 GATAGTAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
27 5 0.17
28 1 0.03
29 7 0.23
30 17 0.57
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (28 bp):
TAATAATATAAATAAATAAAGATAATAA
Found at i:7747444 original size:22 final size:21
Alignment explanation
Indices: 7747315--7747446 Score: 90
Period size: 22 Copynumber: 6.0 Consensus size: 21
7747305 ATAACAGTAG
*
7747315 TAATAAATA-AATAAATAATGA
1 TAATAAAAATAAT-AATAATGA
*
7747336 TAATAAAAATAATAGTAAAT-A
1 TAATAAAAATAATAAT-AATGA
* *
7747357 AAATAAAGATAAAATTAATAATGA
1 TAATAAA-A-ATAA-TAATAATGA
* * *
7747381 TAGTAACGAAT-ATAAATAATAA
1 TAATAA-AAATAAT-AATAATGA
*
7747403 TAGTAAAAATAATAATAATGA
1 TAATAAAAATAATAATAATGA
*
7747424 TAATACAAATTAATAATAATGA
1 TAATA-AAAATAATAATAATGA
7747446 T
1 T
7747447 GATATAAGTA
Statistics
Matches: 87, Mismatches: 14, Indels: 19
0.73 0.12 0.16
Matches are distributed among these distances:
21 32 0.37
22 39 0.45
23 7 0.08
24 9 0.10
ACGTcount: A:0.63, C:0.02, G:0.07, T:0.29
Consensus pattern (21 bp):
TAATAAAAATAATAATAATGA
Found at i:7747582 original size:3 final size:3
Alignment explanation
Indices: 7747574--7747769 Score: 52
Period size: 3 Copynumber: 65.7 Consensus size: 3
7747564 GGTAGAAAAG
* * * *
7747574 ATA ATA ATA ACGTA CTA ATA AGA ATA ATA AT- ATA ATA ATA ATT ATGG
1 ATA ATA ATA A--TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A
* * * *
7747621 A-A ATA ATA ATA AT- ATT TTAA ATA A-G ATA ATA ATA ATA GAT- AGA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA -ATA ATA
* * * * * * * *
7747664 AT- GTA GTA GTA ATA AT- ATG TTA ATA A-A AGTA AGA GTA ATA AAA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA
* * * *
7747707 ATA AAA ATA AAA ATA ATA GTA A-A TATA ATA A-A TATA ATA ATA AAA
1 ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA -ATA ATA ATA ATA
*
7747752 GATA ATA ATA AAA ATA AT
1 -ATA ATA ATA ATA ATA AT
7747770 TAATTGGAAA
Statistics
Matches: 139, Mismatches: 35, Indels: 38
0.66 0.17 0.18
Matches are distributed among these distances:
2 14 0.10
3 113 0.81
4 10 0.07
5 2 0.01
ACGTcount: A:0.61, C:0.01, G:0.08, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:7747727 original size:27 final size:27
Alignment explanation
Indices: 7747686--7747768 Score: 82
Period size: 27 Copynumber: 3.1 Consensus size: 27
7747676 TAATATGTTA
* * *
7747686 ATAAAAGTAAGAGTAATAAAAATAAAA
1 ATAAAAATAAAAGTAATAATAATAAAA
* *
7747713 ATAAAAATAATAGTAA-ATATAATAAAT
1 ATAAAAATAAAAGTAATA-ATAATAAAA
*
7747740 ATAATAATAAAAG--ATAATAATAAAA
1 ATAAAAATAAAAGTAATAATAATAAAA
7747765 ATAA
1 ATAA
7747769 TTAATTGGAA
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
25 13 0.28
26 2 0.04
27 32 0.68
ACGTcount: A:0.70, C:0.00, G:0.06, T:0.24
Consensus pattern (27 bp):
ATAAAAATAAAAGTAATAATAATAAAA
Found at i:7747728 original size:33 final size:33
Alignment explanation
Indices: 7747699--7747769 Score: 97
Period size: 33 Copynumber: 2.1 Consensus size: 33
7747689 AAAGTAAGAG
7747699 TAATAAAAATAAAAATAAAAATAATAGTAAATA
1 TAATAAAAATAAAAATAAAAATAATAGTAAATA
* * * *
7747732 TAATAAATATAATAATAAAAGATAATAATAAAAA
1 TAATAAAAATAAAAATAAAA-ATAATAGTAAATA
7747766 TAAT
1 TAAT
7747770 TAATTGGAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
33 18 0.55
34 15 0.45
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (33 bp):
TAATAAAAATAAAAATAAAAATAATAGTAAATA
Found at i:7747769 original size:12 final size:12
Alignment explanation
Indices: 7747699--7747769 Score: 85
Period size: 12 Copynumber: 6.1 Consensus size: 12
7747689 AAAGTAAGAG
7747699 TAATAAAAATAA
1 TAATAAAAATAA
*
7747711 AAATAAAAATAA
1 TAATAAAAATAA
*
7747723 TAGT--AAAT-A
1 TAATAAAAATAA
*
7747732 TAATAAATATAA
1 TAATAAAAATAA
7747744 TAATAAAAGATAA
1 TAATAAAA-ATAA
7747757 TAATAAAAATAA
1 TAATAAAAATAA
7747769 T
1 T
7747770 TAATTGGAAA
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
9 4 0.08
10 4 0.08
11 3 0.06
12 26 0.53
13 12 0.24
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (12 bp):
TAATAAAAATAA
Found at i:7747785 original size:34 final size:32
Alignment explanation
Indices: 7747700--7747769 Score: 90
Period size: 34 Copynumber: 2.2 Consensus size: 32
7747690 AAGTAAGAGT
*
7747700 AATAA-AAATA-AAAATAAAAATAATAGTAAA
1 AATAATAAATATAAAATAAAAATAATAATAAA
*
7747730 TATAATAAATATAATAATAAAAGATAATAATAAA
1 AATAATAAATATAA-AATAAAA-ATAATAATAAA
7747764 AATAAT
1 AATAAT
7747770 TAATTGGAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
30 4 0.12
31 5 0.15
32 2 0.06
33 7 0.21
34 15 0.45
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (32 bp):
AATAATAAATATAAAATAAAAATAATAATAAA
Found at i:7757439 original size:49 final size:49
Alignment explanation
Indices: 7757382--7757480 Score: 171
Period size: 49 Copynumber: 2.0 Consensus size: 49
7757372 AATTTAAAGT
* *
7757382 TAGGAAAATTATCTTTAAAAAGACGAAAATGAGTTCATAAGATATGTAG
1 TAGGAAAATTATCTTTAAAAAGACGAAAAGGAGTTAATAAGATATGTAG
*
7757431 TAGGAAAATTATCTTTAGAAAGACGAAAAGGAGTTAATAAGATATGTAG
1 TAGGAAAATTATCTTTAAAAAGACGAAAAGGAGTTAATAAGATATGTAG
7757480 T
1 T
7757481 TGTTAATAAG
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.46, C:0.05, G:0.20, T:0.28
Consensus pattern (49 bp):
TAGGAAAATTATCTTTAAAAAGACGAAAAGGAGTTAATAAGATATGTAG
Found at i:7759462 original size:19 final size:19
Alignment explanation
Indices: 7759438--7759483 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
7759428 TCCTAGAAAA
7759438 TAAATAAAACTTATCTATC
1 TAAATAAAACTTATCTATC
* *
7759457 TAAATAAGATTTATCTATC
1 TAAATAAAACTTATCTATC
7759476 TAAATAAA
1 TAAATAAA
7759484 TATATAAGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.50, C:0.11, G:0.02, T:0.37
Consensus pattern (19 bp):
TAAATAAAACTTATCTATC
Found at i:7764075 original size:61 final size:61
Alignment explanation
Indices: 7763967--7764212 Score: 379
Period size: 61 Copynumber: 4.0 Consensus size: 61
7763957 GTGATGTAGT
* *
7763967 AATTTTAAAATTATTTTTTGAAAAA-AATTTGAGGTTACTTACTACTGAAGTGCCTAATTA
1 AATTTTAAAATTATTTTTTGAAAAAGAAATTGAGGTTACTTACTACTGAAGTACCTAATTA
*
7764027 AATTTTAAAATTATTTTTTGAAAAAGAAATTGAGGTTACTTACTACTGAAGTGCCTAATTA
1 AATTTTAAAATTATTTTTTGAAAAAGAAATTGAGGTTACTTACTACTGAAGTACCTAATTA
* **
7764088 AATTTTAAAATTATTTTTTGAAAAAGAAATTGAGGTTACTTAATGTTGAAGTACCTAATTA
1 AATTTTAAAATTATTTTTTGAAAAAGAAATTGAGGTTACTTACTACTGAAGTACCTAATTA
* * * *
7764149 AATTTTAAAATTATATTTTAAAAAAGAAATTGAGGTTACTT-CAGATTGAAGTACCTAATTA
1 AATTTTAAAATTATTTTTTGAAAAAGAAATTGAGGTTACTTAC-TACTGAAGTACCTAATTA
7764210 AAT
1 AAT
7764213 ATTTGTTTTT
Statistics
Matches: 174, Mismatches: 10, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
60 25 0.14
61 149 0.86
ACGTcount: A:0.41, C:0.07, G:0.12, T:0.40
Consensus pattern (61 bp):
AATTTTAAAATTATTTTTTGAAAAAGAAATTGAGGTTACTTACTACTGAAGTACCTAATTA
Found at i:7780720 original size:60 final size:61
Alignment explanation
Indices: 7780626--7780754 Score: 224
Period size: 60 Copynumber: 2.1 Consensus size: 61
7780616 GTGATTTAGT
*
7780626 AATTTTAAAATTATTTTTTGAAAAAGAAATTGAGGTTACTTAATCTTGAAGTACCTAATTA
1 AATTTTAAAATTATTTTTTGAAAAAGAAATTGAGGTTACTTAATATTGAAGTACCTAATTA
*
7780687 AATTTTAAAATTATTTTTT-AAAAAGAAATTGAGGTTACTTCATATTGAAGTACCTAATTA
1 AATTTTAAAATTATTTTTTGAAAAAGAAATTGAGGTTACTTAATATTGAAGTACCTAATTA
7780747 AATATTTA
1 AAT-TTTA
7780755 TTTTAATTTA
Statistics
Matches: 65, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
60 42 0.65
61 23 0.35
ACGTcount: A:0.42, C:0.06, G:0.10, T:0.42
Consensus pattern (61 bp):
AATTTTAAAATTATTTTTTGAAAAAGAAATTGAGGTTACTTAATATTGAAGTACCTAATTA
Found at i:7782357 original size:34 final size:34
Alignment explanation
Indices: 7782315--7782385 Score: 133
Period size: 34 Copynumber: 2.1 Consensus size: 34
7782305 AAAAGATACG
*
7782315 TTTAATTAATTCATATTTTTTATATATATAATAT
1 TTTAATTAATTCATATTTTCTATATATATAATAT
7782349 TTTAATTAATTCATATTTTCTATATATATAATAT
1 TTTAATTAATTCATATTTTCTATATATATAATAT
7782383 TTT
1 TTT
7782386 GACTTTAAGT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (34 bp):
TTTAATTAATTCATATTTTCTATATATATAATAT
Found at i:7782364 original size:16 final size:16
Alignment explanation
Indices: 7782315--7782367 Score: 54
Period size: 16 Copynumber: 3.2 Consensus size: 16
7782305 AAAAGATACG
7782315 TTTAATTAATTCATAT
1 TTTAATTAATTCATAT
* *
7782331 TTT-TTATATATATAATAT
1 TTTAAT-TA-AT-TCATAT
7782349 TTTAATTAATTCATAT
1 TTTAATTAATTCATAT
7782365 TTT
1 TTT
7782368 CTATATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 8
0.71 0.10 0.20
Matches are distributed among these distances:
15 1 0.03
16 13 0.45
17 4 0.14
18 10 0.34
19 1 0.03
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (16 bp):
TTTAATTAATTCATAT
Found at i:7782384 original size:18 final size:17
Alignment explanation
Indices: 7782331--7782385 Score: 60
Period size: 16 Copynumber: 3.2 Consensus size: 17
7782321 TAATTCATAT
7782331 TTTTTATATATATAATA
1 TTTTTATATATATAATA
* *
7782348 TTTTAAT-TA-ATTCATA
1 TTTTTATATATA-TAATA
7782364 TTTTCTATATATATAATA
1 TTTT-TATATATATAATA
7782382 TTTT
1 TTTT
7782386 GACTTTAAGT
Statistics
Matches: 30, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
15 1 0.03
16 10 0.33
17 8 0.27
18 10 0.33
19 1 0.03
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (17 bp):
TTTTTATATATATAATA
Found at i:7785605 original size:93 final size:88
Alignment explanation
Indices: 7785485--7785684 Score: 224
Period size: 88 Copynumber: 2.2 Consensus size: 88
7785475 TTAATGGTGT
* * * *
7785485 AAAAAGCCCTCAAACTTTTTCAGAAAAAGGAATTAAACCTATCTTCTTCTTTTTTTGCACTCAAT
1 AAAAAGCCCTCAAACTTTTTAAAAAAAAGCAATTAAACC-A--TTCTT-TTTTTTT-CACTAAAT
* *
7785550 TGAGTACTTGAACTTTTAAAATGCATAA
61 TGAGTACTTGAACTTTCAAAATACATAA
* * * *
7785578 AAAAAGCCTTCAAA-TTTCTTAAAAAAAAGCAATTAATCCATTGTTTTTTTTTCACTAAATTGGG
1 AAAAAGCCCTCAAACTTT-TTAAAAAAAAGCAATTAAACCATTCTTTTTTTTTCACTAAATTGAG
7785642 TACTTGAACTTTCAAAATACATAA
65 TACTTGAACTTTCAAAATACATAA
*
7785666 AAAATA-CCCTCAAAATTTT
1 AAAA-AGCCCTCAAACTTTT
7785685 CCAAAAAAGC
Statistics
Matches: 93, Mismatches: 11, Indels: 11
0.81 0.10 0.10
Matches are distributed among these distances:
88 44 0.47
89 11 0.12
90 4 0.04
92 4 0.04
93 30 0.32
ACGTcount: A:0.40, C:0.17, G:0.08, T:0.35
Consensus pattern (88 bp):
AAAAAGCCCTCAAACTTTTTAAAAAAAAGCAATTAAACCATTCTTTTTTTTTCACTAAATTGAGT
ACTTGAACTTTCAAAATACATAA
Found at i:7785757 original size:19 final size:19
Alignment explanation
Indices: 7785733--7785789 Score: 82
Period size: 19 Copynumber: 3.0 Consensus size: 19
7785723 TAAAAAATAT
7785733 ATAAAAATATTAAATTTTA
1 ATAAAAATATTAAATTTTA
7785752 GA-AAAAATATTAAATTTTA
1 -ATAAAAATATTAAATTTTA
7785771 ATAAAAA-ATTAAAATTTTA
1 ATAAAAATATT-AAATTTTA
7785790 TTCAAATTAT
Statistics
Matches: 35, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
18 4 0.11
19 30 0.86
20 1 0.03
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.39
Consensus pattern (19 bp):
ATAAAAATATTAAATTTTA
Found at i:7785837 original size:19 final size:19
Alignment explanation
Indices: 7785802--7785866 Score: 64
Period size: 19 Copynumber: 3.5 Consensus size: 19
7785792 CAAATTATTT
7785802 TTATAAAAATTGT-AAATAA
1 TTAT-AAAATTGTAAAATAA
*
7785821 TTATAAAATTGTAAAAT-T
1 TTATAAAATTGTAAAATAA
**
7785839 TTATAATAATCATAAAA-AA
1 TTATAA-AATTGTAAAATAA
7785858 TTATAAAAT
1 TTATAAAAT
7785867 GCATTAAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
18 17 0.44
19 22 0.56
ACGTcount: A:0.57, C:0.02, G:0.03, T:0.38
Consensus pattern (19 bp):
TTATAAAATTGTAAAATAA
Found at i:7785875 original size:19 final size:19
Alignment explanation
Indices: 7785839--7785878 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
7785829 TTGTAAAATT
7785839 TTATAATAATCATAAAAAA
1 TTATAATAATCATAAAAAA
7785858 TTATAA-AATGCATTAAAAAA
1 TTATAATAAT-CA-TAAAAAA
7785878 T
1 T
7785879 CCCTTTAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 3 0.16
19 8 0.42
20 8 0.42
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.33
Consensus pattern (19 bp):
TTATAATAATCATAAAAAA
Found at i:7786156 original size:17 final size:17
Alignment explanation
Indices: 7786134--7786215 Score: 74
Period size: 17 Copynumber: 4.6 Consensus size: 17
7786124 ATATTTCTAT
7786134 ATATTTAATATTTTTTA
1 ATATTTAATATTTTTTA
* * *
7786151 AGATTTTTATATTTTTTCT
1 ATA-TTTAATATTTTTT-A
*
7786170 ATTTTTAATACATTTTTTA
1 ATATTTAAT--ATTTTTTA
*
7786189 ATATTTAATATTTATTA
1 ATATTTAATATTTTTTA
*
7786206 AAATTTAATA
1 ATATTTAATA
7786216 ATATTTATAG
Statistics
Matches: 51, Mismatches: 10, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
17 18 0.35
18 17 0.33
19 9 0.18
20 7 0.14
ACGTcount: A:0.35, C:0.02, G:0.01, T:0.61
Consensus pattern (17 bp):
ATATTTAATATTTTTTA
Found at i:7786156 original size:27 final size:26
Alignment explanation
Indices: 7786117--7786222 Score: 72
Period size: 27 Copynumber: 3.9 Consensus size: 26
7786107 GAATTGTATA
*
7786117 ATTTTTT-ATATTTCTATATATTTAAT
1 ATTTTTTAAAATTT-TATATATTTAAT
* **
7786143 ATTTTTTAAGATTTT-TATATTTTTT
1 ATTTTTTAAAATTTTATATATTTAAT
* *
7786168 CTATTTTTAATACATTTTTTAATATTTAAT
1 AT-TTTTTAA-A-ATTTTAT-ATATTTAAT
* *
7786198 ATTTATTAAAATTTAATAATATTTA
1 ATTTTTTAAAATTTTAT-ATATTTA
7786223 TAGCTTTTAT
Statistics
Matches: 63, Mismatches: 11, Indels: 11
0.74 0.13 0.13
Matches are distributed among these distances:
25 9 0.14
26 15 0.24
27 18 0.29
28 6 0.10
29 7 0.11
30 8 0.13
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (26 bp):
ATTTTTTAAAATTTTATATATTTAAT
Found at i:7786166 original size:9 final size:9
Alignment explanation
Indices: 7786117--7786194 Score: 52
Period size: 9 Copynumber: 8.4 Consensus size: 9
7786107 GAATTGTATA
7786117 ATTTTTTAT
1 ATTTTTTAT
*
7786126 A-TTTCTAT
1 ATTTTTTAT
* *
7786134 ATATTTAAT
1 ATTTTTTAT
7786143 ATTTTTTA-
1 ATTTTTTAT
*
7786151 AGATTTTTAT
1 A-TTTTTTAT
*
7786161 ATTTTTTCT
1 ATTTTTTAT
*
7786170 ATTTTTAATAC
1 ATTTTT--TAT
7786181 ATTTTTTAAT
1 ATTTTTT-AT
7786191 ATTT
1 ATTT
7786195 AATATTTATT
Statistics
Matches: 51, Mismatches: 12, Indels: 11
0.69 0.16 0.15
Matches are distributed among these distances:
8 8 0.16
9 30 0.59
10 6 0.12
11 7 0.14
ACGTcount: A:0.28, C:0.04, G:0.01, T:0.67
Consensus pattern (9 bp):
ATTTTTTAT
Found at i:7786422 original size:90 final size:90
Alignment explanation
Indices: 7786252--7786430 Score: 216
Period size: 90 Copynumber: 2.0 Consensus size: 90
7786242 TTTTTAATAA
** * *
7786252 AAGTAGGGGCTTAATTGCTTTTTTTGAAAAAAATTTAAGGTTTTTTTCATTCATTTTGAAAGTTC
1 AAGTAGGGGCTTAATTGCTTTTTTTGAAAAAAATTTAAGGCCTTTTTAATACATTTTGAAAGTTC
* * * * *
7786317 AAGTATTCAATTGAGTGCAAAAAAG
66 AAATACTAAAATGAGTGAAAAAAAG
* * * *
7786342 AAGTAGTGGTTTAATTGCTTTTTTTG-AAAAAGTTTGAGAGCCTTTTTAATACATTTTGAAAGTT
1 AAGTAGGGGCTTAATTGCTTTTTTTGAAAAAAATTTAAG-GCCTTTTTAATACATTTTGAAAGTT
*
7786406 TAAATACTAAAATGAGTGAAAAAAA
65 CAAATACTAAAATGAGTGAAAAAAA
7786431 AAGAGATAGG
Statistics
Matches: 74, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
89 10 0.14
90 64 0.86
ACGTcount: A:0.37, C:0.07, G:0.17, T:0.39
Consensus pattern (90 bp):
AAGTAGGGGCTTAATTGCTTTTTTTGAAAAAAATTTAAGGCCTTTTTAATACATTTTGAAAGTTC
AAATACTAAAATGAGTGAAAAAAAG
Found at i:7787262 original size:9 final size:10
Alignment explanation
Indices: 7787241--7787274 Score: 54
Period size: 9 Copynumber: 3.6 Consensus size: 10
7787231 GATATATTTT
7787241 TATTTTTATA
1 TATTTTTATA
7787251 TATTTTTA-A
1 TATTTTTATA
7787260 TATTTTTATA
1 TATTTTTATA
7787270 -ATTTT
1 TATTTT
7787275 GAATCAGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 14 0.61
10 9 0.39
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (10 bp):
TATTTTTATA
Found at i:7787285 original size:19 final size:19
Alignment explanation
Indices: 7787244--7787285 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
7787234 ATATTTTTAT
* *
7787244 TTTTATATATTTTTAATAT
1 TTTTATATATTTTGAATAG
7787263 TTTTATA-ATTTTGAATCAG
1 TTTTATATATTTTGAAT-AG
7787282 TTTT
1 TTTT
7787286 TGACATGGCG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.29, C:0.02, G:0.05, T:0.64
Consensus pattern (19 bp):
TTTTATATATTTTGAATAG
Found at i:7790364 original size:39 final size:40
Alignment explanation
Indices: 7790310--7790388 Score: 133
Period size: 39 Copynumber: 2.0 Consensus size: 40
7790300 CTAATAGGCA
**
7790310 GGTTAAAATTAGAAACATAT-AAAAAGTGTAAGGAGATTT
1 GGTTAAAATTAGAAACATATAAAAAAGAATAAGGAGATTT
7790349 GGTTAAAATTAGAAACATATAAAAAAGAATAAGGAGATTT
1 GGTTAAAATTAGAAACATATAAAAAAGAATAAGGAGATTT
7790389 AATTAACACC
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
39 20 0.54
40 17 0.46
ACGTcount: A:0.52, C:0.03, G:0.19, T:0.27
Consensus pattern (40 bp):
GGTTAAAATTAGAAACATATAAAAAAGAATAAGGAGATTT
Found at i:7791237 original size:347 final size:358
Alignment explanation
Indices: 7790596--7791399 Score: 940
Period size: 347 Copynumber: 2.3 Consensus size: 358
7790586 TGCCACTGTG
** * * * *
7790596 ACCATATTAATCTTTTCACTCCTCAATTACCACAATAAATACAATTATGAGTCAACAACATTACT
1 ACCATATTAAAATTTTCACTTCTCAATTACAACAATAAATACAATTACGAGTAAACAACATTACT
* * * *
7790661 TAAAAATGAACTTTTAGTAGAT-AAAGTCCTTTGGGTCTAAGGGTGAAGAAAAAACATTTTTTAG
66 GAAAAATGAACTATTAGTAGATGAAAGTCCTTTGGGTCCAAGGGTGAAGAAAAAACA-TATTTAG
* * * *
7790725 GGCTAGAATTATAGTTAAACCTTTAATTAATTCATTTTCTTCTCCTATGATATTCTATAATTACA
130 GACAAAAATTATAATTAAACCTTTAATTAATTCA---T-TTCTCCTATGATATTCTATAATTACA
* *
7790790 TTACAATTTACAAAGCTATTTCATAAAAGAAAAAAGAGTAAATTTGTGGTTGAGCTGGAAGATAA
191 TTACAATTTACAAAGCTATTCCATAAAAGAAAAAAGAGTAAATTTATGGTTGAGCTGGAAGATAA
* * * *
7790855 CATAATTAGAAAACTTGTTACTCGTGAAGCTAAAACTCTCCTTATGTATAGATAAATAGCTTCGT
256 CATAAATAGAAAACTTGTTACTCGTGAAGCTAAAACTCTCCTTATGTATAAATAAACAACTTCGT
* * * * *
7790920 ACATAT-GCTCCTCTA-GTT-ACTA-C-C-A-A-TGCT
321 ACACATCACTCATCTATGTTCACTACCACTACACTACC
* * ** *
7790950 ACCGTATTAAAATTTTCACTTCTCAATGACAACAATAAATGTAATCACGAGTAAACAACATTACT
1 ACCATATTAAAATTTTCACTTCTCAATTACAACAATAAATACAATTACGAGTAAACAACATTACT
*
7791015 GAAAAATGAACTATTAGTAGATGAAA-TCC-TTGGGTCCAGGGGTGAAGAAAAAA-A-ATTTAGG
66 GAAAAATGAACTATTAGTAGATGAAAGTCCTTTGGGTCCAAGGGTGAAGAAAAAACATATTTAGG
* * * * *
7791076 ACAAAAATTATAATTATACCTTTACTTTATTCA-TT-TCCT-T-CTATTCTATAGTTACATTACA
131 ACAAAAATTATAATTAAACCTTTAATTAATTCATTTCTCCTATGATATTCTATAATTACATTACA
* *
7791137 ATTTACAAAGCTATTCCATCCAAAAGAAAAAAAGAAGGTAAATTTATGGTTTAGCTGGAAGATAG
196 ATTTACAAAGCTATTCCAT--AAAAG-AAAAAAG-A-GTAAATTTATGGTTGAGCTGGAAGATAA
* * *
7791202 CATAAATAGAAAACTTGTTGCTCGTGAAGCTAAAACTCTTCTTATGTATAAATAAGCAACTTCGT
256 CATAAATAGAAAACTTGTTACTCGTGAAGCTAAAACTCTCCTTATGTATAAATAAACAACTTCGT
*
7791267 ACACATCACTTATCTAGTTGTTACCACTACCACTACCACTACC
321 ACACATCACTCATCTA--TGTT--CACTACCACTA-CACTACC
* *
7791310 ACCATATTAAAATTTTCACTTATCAATTACAACAATAAATACAATTACGAGTAAACAACATTATT
1 ACCATATTAAAATTTTCACTTCTCAATTACAACAATAAATACAATTACGAGTAAACAACATTACT
* *
7791375 GAAAAGTGAATTATTAGTAGATGAA
66 GAAAAATGAACTATTAGTAGATGAA
7791400 TGCCTAGTTT
Statistics
Matches: 380, Mismatches: 51, Indels: 32
0.82 0.11 0.07
Matches are distributed among these distances:
342 37 0.10
343 1 0.00
344 9 0.02
345 9 0.02
346 1 0.00
347 88 0.23
348 6 0.02
350 32 0.08
351 3 0.01
352 1 0.00
353 22 0.06
354 81 0.21
355 4 0.01
356 1 0.00
357 1 0.00
359 1 0.00
360 83 0.22
ACGTcount: A:0.39, C:0.16, G:0.12, T:0.32
Consensus pattern (358 bp):
ACCATATTAAAATTTTCACTTCTCAATTACAACAATAAATACAATTACGAGTAAACAACATTACT
GAAAAATGAACTATTAGTAGATGAAAGTCCTTTGGGTCCAAGGGTGAAGAAAAAACATATTTAGG
ACAAAAATTATAATTAAACCTTTAATTAATTCATTTCTCCTATGATATTCTATAATTACATTACA
ATTTACAAAGCTATTCCATAAAAGAAAAAAGAGTAAATTTATGGTTGAGCTGGAAGATAACATAA
ATAGAAAACTTGTTACTCGTGAAGCTAAAACTCTCCTTATGTATAAATAAACAACTTCGTACACA
TCACTCATCTATGTTCACTACCACTACACTACC
Found at i:7792097 original size:26 final size:24
Alignment explanation
Indices: 7792067--7792116 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
7792057 AAATAAAAAA
*
7792067 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
7792093 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
7792117 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:7793013 original size:19 final size:19
Alignment explanation
Indices: 7792991--7793031 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
7792981 GATGAAAATA
*
7792991 AAAAGAAATAATAAAAAAG
1 AAAAGAAATAAAAAAAAAG
7793010 AAAAGAAATAAAAAAAAAG
1 AAAAGAAATAAAAAAAAAG
7793029 AAA
1 AAA
7793032 TAAAAAAGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.83, C:0.00, G:0.10, T:0.07
Consensus pattern (19 bp):
AAAAGAAATAAAAAAAAAG
Found at i:7793047 original size:16 final size:15
Alignment explanation
Indices: 7792986--7793040 Score: 71
Period size: 14 Copynumber: 3.8 Consensus size: 15
7792976 AGAGAGATGA
7792986 AAAT-AAAAAGAAA-
1 AAATAAAAAAGAAAG
*
7792999 TAATAAAAAAGAAAAG
1 AAATAAAAAAG-AAAG
7793015 AAATAAAAAA-AAAG
1 AAATAAAAAAGAAAG
7793029 AAATAAAAAAGA
1 AAATAAAAAAGA
7793041 GTAGAAAAGA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
13 3 0.08
14 20 0.56
15 4 0.11
16 9 0.25
ACGTcount: A:0.82, C:0.00, G:0.09, T:0.09
Consensus pattern (15 bp):
AAATAAAAAAGAAAG
Found at i:7800247 original size:26 final size:26
Alignment explanation
Indices: 7800214--7800267 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
7800204 ATTTTATATG
7800214 AATTTAATTAATATAATAATAAATTT
1 AATTTAATTAATATAATAATAAATTT
7800240 AATTTAATTAATATAATAATAAATTT
1 AATTTAATTAATATAATAATAAATTT
7800266 AA
1 AA
7800268 CTCTTATAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (26 bp):
AATTTAATTAATATAATAATAAATTT
Found at i:7803967 original size:25 final size:25
Alignment explanation
Indices: 7803922--7803970 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
7803912 GTTTCTGAAT
* *
7803922 TTAAAATTTTTAAGTCTATTTAAAA
1 TTAAAATTTTTAAATCCATTTAAAA
7803947 TTAAAA-TTTTAAATACCATTTAAA
1 TTAAAATTTTTAAAT-CCATTTAAA
7803971 TATTTCTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.47, C:0.06, G:0.02, T:0.45
Consensus pattern (25 bp):
TTAAAATTTTTAAATCCATTTAAAA
Found at i:7808340 original size:33 final size:35
Alignment explanation
Indices: 7808296--7808381 Score: 104
Period size: 33 Copynumber: 2.5 Consensus size: 35
7808286 ATAACACTAG
7808296 TAAAAAGATAATATATTATATATAAA-ATTACA-GT
1 TAAAAA-ATAATATATTATATATAAATATTACATGT
* * * *
7808330 TAGAAAATAATATATCATATATAAATTTTACATTT
1 TAAAAAATAATATATTATATATAAATATTACATGT
7808365 TAAAAAATAATAATATT
1 TAAAAAATAAT-ATATT
7808382 TTAAAAAGTT
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
33 18 0.42
34 10 0.23
35 11 0.26
36 4 0.09
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.38
Consensus pattern (35 bp):
TAAAAAATAATATATTATATATAAATATTACATGT
Found at i:7808716 original size:19 final size:20
Alignment explanation
Indices: 7808691--7808746 Score: 71
Period size: 19 Copynumber: 2.9 Consensus size: 20
7808681 GGCAATAAAA
7808691 AATAAAAAATAATAAAATTT
1 AATAAAAAATAATAAAATTT
* *
7808711 -ATAAAAATTATTAAAATTT
1 AATAAAAAATAATAAAATTT
7808730 AATAAAAGAAT-ATAAAA
1 AATAAAA-AATAATAAAA
7808747 AAATATTTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
19 17 0.57
20 11 0.37
21 2 0.07
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (20 bp):
AATAAAAAATAATAAAATTT
Found at i:7808759 original size:31 final size:30
Alignment explanation
Indices: 7808698--7808786 Score: 81
Period size: 31 Copynumber: 2.8 Consensus size: 30
7808688 AAAAATAAAA
* * *
7808698 AATAATAAAATTTATAAAAATTATTAAAATTT
1 AATAA-AAAA-TTAGAAAAAATATTTAAATTT
7808730 AATAAAAGAATATA-AAAAAATATTTAAATTT
1 AATAAAA-AAT-TAGAAAAAATATTTAAATTT
* *
7808761 TATTAAAAATTAGAAAAAATAATTTA
1 AATAAAAAATTAGAAAAAAT-ATTTA
7808787 TAAAAATTAT
Statistics
Matches: 49, Mismatches: 4, Indels: 9
0.79 0.06 0.15
Matches are distributed among these distances:
29 2 0.04
30 10 0.20
31 28 0.57
32 9 0.18
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (30 bp):
AATAAAAAATTAGAAAAAATATTTAAATTT
Found at i:7813067 original size:3 final size:3
Alignment explanation
Indices: 7812936--7813039 Score: 88
Period size: 3 Copynumber: 35.0 Consensus size: 3
7812926 AATAGCCATG
* * *
7812936 ATA ATA ATA ATA GA-A ATA ATA GTA ATA ATA A-A ATA ATA ATG GTA
1 ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
7812980 ATA ATA A-A ACGA ATA ATA ATA ATA GTA ATA ATA AGA AGA TTA ATA
1 ATA ATA ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
7813025 ATA GTA ATA ATA ATA
1 ATA ATA ATA ATA ATA
7813040 TAAATATATA
Statistics
Matches: 81, Mismatches: 15, Indels: 10
0.76 0.14 0.09
Matches are distributed among these distances:
2 5 0.06
3 73 0.90
4 3 0.04
ACGTcount: A:0.62, C:0.01, G:0.09, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:7814016 original size:17 final size:17
Alignment explanation
Indices: 7813994--7814034 Score: 50
Period size: 16 Copynumber: 2.4 Consensus size: 17
7813984 TATTTCGAAC
7813994 TAAAAAATGGAAAT-AAA
1 TAAAAAAT-GAAATAAAA
7814011 T-AAAAATGAAATAGAAA
1 TAAAAAATGAAATA-AAA
7814028 TAAAAAA
1 TAAAAAA
7814035 GCACCTTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
15 5 0.24
16 6 0.29
17 5 0.24
18 5 0.24
ACGTcount: A:0.73, C:0.00, G:0.10, T:0.17
Consensus pattern (17 bp):
TAAAAAATGAAATAAAA
Found at i:7814990 original size:21 final size:20
Alignment explanation
Indices: 7814957--7815011 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 20
7814947 ATTAGGTATT
*
7814957 TTTA-TTTTATTTTATTTGAA
1 TTTATTTTTGTTTTATTT-AA
*
7814977 TTTATTTTTGTTTTATTTTA
1 TTTATTTTTGTTTTATTTAA
*
7814997 TATTGTTTTTGTTTT
1 T-TTATTTTTGTTTT
7815012 TCAAGTACTC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.20
21 24 0.80
ACGTcount: A:0.16, C:0.00, G:0.07, T:0.76
Consensus pattern (20 bp):
TTTATTTTTGTTTTATTTAA
Found at i:7815002 original size:15 final size:15
Alignment explanation
Indices: 7814956--7815005 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
7814946 GATTAGGTAT
*
7814956 TTTTATTTTATTTTA
1 TTTTATTTTATTTTG
* *
7814971 TTTGAATTTATTTTTG
1 TTTTATTTTA-TTTTG
*
7814987 TTTTATTTTATATTG
1 TTTTATTTTATTTTG
7815002 TTTT
1 TTTT
7815006 TGTTTTTCAA
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
15 16 0.57
16 12 0.43
ACGTcount: A:0.18, C:0.00, G:0.06, T:0.76
Consensus pattern (15 bp):
TTTTATTTTATTTTG
Found at i:7817455 original size:40 final size:40
Alignment explanation
Indices: 7817386--7817487 Score: 118
Period size: 40 Copynumber: 2.5 Consensus size: 40
7817376 ACGCCGTTAT
7817386 AGATCGAGCATTAGCGGCGTTTTTCAGAAAATACCGCTA-A
1 AGATC-AGCATTAGCGGCGTTTTTCAGAAAATACCGCTATA
*
7817426 AGATCAGCATTAGCGGCGCTTTTAT-AGAAAATGCCGCTATA
1 AGATCAGCATTAGCGGCG-TTTT-TCAGAAAATACCGCTATA
* * * *
7817467 GGTTGAGCATTAGCGGTGTTT
1 AGATCAGCATTAGCGGCGTTT
7817488 CTCCCAAAAC
Statistics
Matches: 54, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
39 13 0.24
40 25 0.46
41 16 0.30
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.28
Consensus pattern (40 bp):
AGATCAGCATTAGCGGCGTTTTTCAGAAAATACCGCTATA
Found at i:7817676 original size:115 final size:116
Alignment explanation
Indices: 7817432--7817697 Score: 304
Period size: 115 Copynumber: 2.3 Consensus size: 116
7817422 CTAAAGATCA
* * *
7817432 GCATTAGCGGCGCTTTTAT-AGAAAATGCCGCTATAGGTTGAGCATTAGCGGTGTTTCTCCCAAA
1 GCATTAGCGGCG-TTTTTTGA-AAAATGCCGCTATAGGTTCAGCATTAGCGGCGTTTCTCCCAAA
* * * *
7817496 ACACCGCAAAAAAAATTAGCAAGACGTTGTCGTTTTCATGTTGAGCATTAGTG
64 ACACCGCAAAAAAAATCAGCAAGACATCGTCGTTTTCATGTTAAGCATTAGTG
* * * **
7817549 GCATTAGCGGCGTTTTTTGAAAAATGCTGCTATCGGTTCAGCATTAGTGGCGTTTCTCGTAAAAC
1 GCATTAGCGGCGTTTTTTGAAAAATGCCGCTATAGGTTCAGCATTAGCGGCGTTTCTCCCAAAAC
* * * *
7817614 GCTGC-AAAAGAATCAGCAAGACATCGTCGTTTTCATGTTAAGGA-TATGTG
66 ACCGCAAAAAAAATCAGCAAGACATCGTCGTTTTCATGTTAAGCATTA-GTG
* ** *
7817664 GCATTAGTGGCGTTTTTCCAAAAACGCCGCTATA
1 GCATTAGCGGCGTTTTTTGAAAAATGCCGCTATA
7817698 AATCGAGCAT
Statistics
Matches: 125, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
114 2 0.02
115 64 0.51
116 46 0.37
117 13 0.10
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (116 bp):
GCATTAGCGGCGTTTTTTGAAAAATGCCGCTATAGGTTCAGCATTAGCGGCGTTTCTCCCAAAAC
ACCGCAAAAAAAATCAGCAAGACATCGTCGTTTTCATGTTAAGCATTAGTG
Found at i:7818088 original size:15 final size:15
Alignment explanation
Indices: 7818063--7818104 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
7818053 AATATTTTAA
* *
7818063 GGTTTAGGGATTTTG
1 GGTTTAAGGATTATG
*
7818078 TGTTTAAGGATTATG
1 GGTTTAAGGATTATG
7818093 GGTTTAAGGATT
1 GGTTTAAGGATT
7818105 GTGGCTTAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.21, C:0.00, G:0.33, T:0.45
Consensus pattern (15 bp):
GGTTTAAGGATTATG
Found at i:7818185 original size:22 final size:21
Alignment explanation
Indices: 7818117--7818187 Score: 65
Period size: 22 Copynumber: 3.3 Consensus size: 21
7818107 GGCTTAAAGT
*
7818117 TTAAGGATT-AGTGGGTAGAGG
1 TTAAGGATTAAG-GGGTAGGGG
* *
7818138 TTAATGG-TTAAGGGTTATGGGT
1 TTAA-GGATTAAGGGGTA-GGGG
7818160 TTAAGGATTAAGGGGATAGGGG
1 TTAAGGATTAAGGGG-TAGGGG
7818182 TTAAGG
1 TTAAGG
7818188 GGACATGGGT
Statistics
Matches: 40, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
21 12 0.30
22 26 0.65
23 2 0.05
ACGTcount: A:0.28, C:0.00, G:0.41, T:0.31
Consensus pattern (21 bp):
TTAAGGATTAAGGGGTAGGGG
Found at i:7818284 original size:21 final size:20
Alignment explanation
Indices: 7818246--7818340 Score: 75
Period size: 21 Copynumber: 4.5 Consensus size: 20
7818236 ATGAATTATG
*
7818246 GGTTT-AGGGATTATGGTTTAT
1 GGTTTAAGGG-TTA-GGTTTAA
7818267 GGTTTAAGGGTTGAGGTTTAA
1 GGTTTAAGGGTT-AGGTTTAA
** *
7818288 AATTTAAGGGTTAGTGGTTAA
1 GGTTTAAGGGTTAG-GTTTAA
*
7818309 GGTTTAAGGTTTTATGGTTTAA
1 GGTTTAAGG-GTTA-GGTTTAA
*
7818331 GGGTTAAGGG
1 GGTTTAAGGG
7818341 GATATGTGAT
Statistics
Matches: 59, Mismatches: 10, Indels: 10
0.75 0.13 0.13
Matches are distributed among these distances:
20 2 0.03
21 35 0.59
22 21 0.36
23 1 0.02
ACGTcount: A:0.24, C:0.00, G:0.35, T:0.41
Consensus pattern (20 bp):
GGTTTAAGGGTTAGGTTTAA
Found at i:7818315 original size:7 final size:7
Alignment explanation
Indices: 7818246--7818339 Score: 55
Period size: 7 Copynumber: 13.3 Consensus size: 7
7818236 ATGAATTATG
*
7818246 GGTTTAG
1 GGTTTAA
* *
7818253 GGATTAT
1 GGTTTAA
*
7818260 GGTTTAT
1 GGTTTAA
7818267 GGTTTAA
1 GGTTTAA
* *
7818274 GGGTTGA
1 GGTTTAA
7818281 GGTTTAA
1 GGTTTAA
**
7818288 AATTTAA
1 GGTTTAA
*
7818295 GGGTT-A
1 GGTTTAA
*
7818301 GTGGTTAA
1 G-GTTTAA
7818309 GGTTTAA
1 GGTTTAA
*
7818316 GGTTTTAT
1 GG-TTTAA
7818324 GGTTTAA
1 GGTTTAA
*
7818331 GGGTTAA
1 GGTTTAA
7818338 GG
1 GG
7818340 GGATATGTGA
Statistics
Matches: 67, Mismatches: 17, Indels: 6
0.74 0.19 0.07
Matches are distributed among these distances:
6 2 0.03
7 57 0.85
8 8 0.12
ACGTcount: A:0.24, C:0.00, G:0.34, T:0.41
Consensus pattern (7 bp):
GGTTTAA
Found at i:7818360 original size:36 final size:36
Alignment explanation
Indices: 7818320--7818393 Score: 89
Period size: 36 Copynumber: 2.1 Consensus size: 36
7818310 GTTTAAGGTT
* *
7818320 TTATG-GTTTAAGGG-TTAAGGGGATATGTGATTAGGG
1 TTATGAGTTT-AGGGTTTAAAGGGACATG-GATTAGGG
*
7818356 TTATGAGTTTAGGGTTTAAAGGGACATGGGTTAGGG
1 TTATGAGTTTAGGGTTTAAAGGGACATGGATTAGGG
7818392 TT
1 TT
7818394 TTAAGGTAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
36 18 0.55
37 15 0.45
ACGTcount: A:0.24, C:0.01, G:0.38, T:0.36
Consensus pattern (36 bp):
TTATGAGTTTAGGGTTTAAAGGGACATGGATTAGGG
Found at i:7818650 original size:21 final size:21
Alignment explanation
Indices: 7818632--7818685 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
7818622 TTAAGTTTAT
7818632 GGTTTAAGGTTTGTTGTTTTG
1 GGTTTAAGGTTTGTTGTTTTG
* ** *
7818653 GGCTTGGGGTTTGTTATTTTG
1 GGTTTAAGGTTTGTTGTTTTG
7818674 GGTTTAAGGTTT
1 GGTTTAAGGTTT
7818686 AGAGTATATA
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.09, C:0.02, G:0.35, T:0.54
Consensus pattern (21 bp):
GGTTTAAGGTTTGTTGTTTTG
Found at i:7818934 original size:19 final size:18
Alignment explanation
Indices: 7818910--7818948 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 18
7818900 TCAATTTGTC
7818910 AATTTTGTTGAATTTTATA
1 AATTTTGTTGAATTTT-TA
7818929 AATTTTGTTGAATTTTTA
1 AATTTTGTTGAATTTTTA
7818947 AA
1 AA
7818949 AATTAATAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.56
Consensus pattern (18 bp):
AATTTTGTTGAATTTTTA
Found at i:7819536 original size:15 final size:15
Alignment explanation
Indices: 7819496--7819536 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
7819486 ATCCCTAACA
*
7819496 TTTTCCCCAAGTAAT
1 TTTTCCCCAAATAAT
**
7819511 TTTTCTTCAAATAAT
1 TTTTCCCCAAATAAT
7819526 TTTTCCCCAAA
1 TTTTCCCCAAA
7819537 CCAGTTCCCC
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.29, C:0.24, G:0.02, T:0.44
Consensus pattern (15 bp):
TTTTCCCCAAATAAT
Found at i:7820553 original size:24 final size:23
Alignment explanation
Indices: 7820526--7820577 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 23
7820516 GAGTGTTAAT
* * *
7820526 ATTTTTATATCAGCCTTTGATTCA
1 ATTTTAATATCAACCATTGATT-A
*
7820550 ATTTTAATATTAACCATTGATTA
1 ATTTTAATATCAACCATTGATTA
7820573 ATTTT
1 ATTTT
7820578 GGATTGGGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
23 6 0.25
24 18 0.75
ACGTcount: A:0.31, C:0.12, G:0.06, T:0.52
Consensus pattern (23 bp):
ATTTTAATATCAACCATTGATTA
Found at i:7822183 original size:24 final size:24
Alignment explanation
Indices: 7822156--7822226 Score: 115
Period size: 24 Copynumber: 3.0 Consensus size: 24
7822146 ATTATTATTG
*
7822156 AAATATTCTCGTCCGTTTTATCAC
1 AAATATTATCGTCCGTTTTATCAC
**
7822180 AAATATTATTTTCCGTTTTATCAC
1 AAATATTATCGTCCGTTTTATCAC
7822204 AAATATTATCGTCCGTTTTATCA
1 AAATATTATCGTCCGTTTTATCA
7822227 TTTAAGTTAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 42 1.00
ACGTcount: A:0.28, C:0.20, G:0.07, T:0.45
Consensus pattern (24 bp):
AAATATTATCGTCCGTTTTATCAC
Found at i:7822465 original size:14 final size:15
Alignment explanation
Indices: 7822411--7822465 Score: 64
Period size: 15 Copynumber: 3.8 Consensus size: 15
7822401 AACGATATGT
7822411 ATATTATTTAATTAAA
1 ATATTATTTAATT-AA
7822427 ATAATT-TTT-A-TAA
1 AT-ATTATTTAATTAA
7822440 ATATTATTTAATTAA
1 ATATTATTTAATTAA
7822455 ATATT-TTTAAT
1 ATATTATTTAAT
7822466 CCTGCAACTT
Statistics
Matches: 35, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
12 3 0.09
13 7 0.20
14 8 0.23
15 9 0.26
16 5 0.14
17 3 0.09
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
ATATTATTTAATTAA
Found at i:7822512 original size:7 final size:7
Alignment explanation
Indices: 7822500--7822524 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
7822490 ACACCTATTG
7822500 GATACTT
1 GATACTT
7822507 GATACTT
1 GATACTT
7822514 GATACTT
1 GATACTT
7822521 GATA
1 GATA
7822525 TGTATTATCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.32, C:0.12, G:0.16, T:0.40
Consensus pattern (7 bp):
GATACTT
Found at i:7822622 original size:9 final size:9
Alignment explanation
Indices: 7822610--7822685 Score: 73
Period size: 9 Copynumber: 8.4 Consensus size: 9
7822600 ATTTGATATT
*
7822610 ATAATTTAC
1 ATAACTTAC
7822619 ATAACTTAC
1 ATAACTTAC
*
7822628 AAAACTTAC
1 ATAACTTAC
*
7822637 ATAACTTAT
1 ATAACTTAC
*
7822646 ATAACTTAG
1 ATAACTTAC
* *
7822655 ATAA-ATAT
1 ATAACTTAC
*
7822663 ATAACTTAT
1 ATAACTTAC
7822672 ATAACTTATC
1 ATAACTTA-C
7822682 ATAA
1 ATAA
7822686 TATCCCTAGT
Statistics
Matches: 56, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
8 6 0.11
9 46 0.82
10 4 0.07
ACGTcount: A:0.49, C:0.13, G:0.01, T:0.37
Consensus pattern (9 bp):
ATAACTTAC
Found at i:7822665 original size:17 final size:17
Alignment explanation
Indices: 7822643--7822675 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7822633 TTACATAACT
7822643 TATATAACTTAGATAAA
1 TATATAACTTAGATAAA
*
7822660 TATATAACTTATATAA
1 TATATAACTTAGATAA
7822676 CTTATCATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.06, G:0.03, T:0.39
Consensus pattern (17 bp):
TATATAACTTAGATAAA
Found at i:7824781 original size:31 final size:31
Alignment explanation
Indices: 7824746--7824805 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
7824736 ATACTTTTTG
* *
7824746 TGCTAAATTTGCTGTTTTTTGTTGCATTTCA
1 TGCTAAATTTGCTATTTTTGGTTGCATTTCA
* * *
7824777 TGCTATATTTGTTATTTTTGGTTGGATTT
1 TGCTAAATTTGCTATTTTTGGTTGCATTT
7824806 AATGTAGGAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.15, C:0.08, G:0.18, T:0.58
Consensus pattern (31 bp):
TGCTAAATTTGCTATTTTTGGTTGCATTTCA
Found at i:7826082 original size:41 final size:41
Alignment explanation
Indices: 7826034--7826118 Score: 170
Period size: 41 Copynumber: 2.1 Consensus size: 41
7826024 AATTTATTAA
7826034 TTTAGACAATAAATCAATTCATTTCCTTCAATTTGGTCATT
1 TTTAGACAATAAATCAATTCATTTCCTTCAATTTGGTCATT
7826075 TTTAGACAATAAATCAATTCATTTCCTTCAATTTGGTCATT
1 TTTAGACAATAAATCAATTCATTTCCTTCAATTTGGTCATT
7826116 TTT
1 TTT
7826119 GATATCCTTA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.31, C:0.16, G:0.07, T:0.46
Consensus pattern (41 bp):
TTTAGACAATAAATCAATTCATTTCCTTCAATTTGGTCATT
Found at i:7827706 original size:30 final size:31
Alignment explanation
Indices: 7827639--7827707 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 31
7827629 CACCCTTAAA
* * *
7827639 ATATTTGCACTATTAGTCCTTTAACATTTTC
1 ATATTTACACTATTAATCCCTTAACATTTTC
*
7827670 ATATTTACACT-TTAATCCCTTAA-ATTTTG
1 ATATTTACACTATTAATCCCTTAACATTTTC
7827699 AGTATTTAC
1 A-TATTTAC
7827708 TCTTGGGCCA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 6 0.18
30 17 0.52
31 10 0.30
ACGTcount: A:0.29, C:0.17, G:0.06, T:0.48
Consensus pattern (31 bp):
ATATTTACACTATTAATCCCTTAACATTTTC
Found at i:7828058 original size:16 final size:18
Alignment explanation
Indices: 7828019--7828052 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7828009 TAGGTTTATA
7828019 ATATTT-TATATTATGTT
1 ATATTTATATATTATGTT
*
7828036 ATTTTTATATATTATGT
1 ATATTTATATATTATGT
7828053 AATTTAGAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (18 bp):
ATATTTATATATTATGTT
Found at i:7830887 original size:26 final size:25
Alignment explanation
Indices: 7830854--7830909 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 25
7830844 AAATAATAGT
*
7830854 ATAAATTTAGTTTAATTTTGTAAAA
1 ATAAATTTAGTTTAATTTTGAAAAA
7830879 ATAATATTTAGTTTAATTTTGAAAAA
1 ATAA-ATTTAGTTTAATTTTGAAAAA
7830905 ATAAA
1 ATAAA
7830910 ATAAAATAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
25 5 0.17
26 24 0.83
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (25 bp):
ATAAATTTAGTTTAATTTTGAAAAA
Found at i:7838477 original size:13 final size:13
Alignment explanation
Indices: 7838459--7838487 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
7838449 TACAAAGAAT
7838459 TTGGATTAAGTGA
1 TTGGATTAAGTGA
7838472 TTGGATTAAGTGA
1 TTGGATTAAGTGA
7838485 TTG
1 TTG
7838488 TTCATATTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.28, C:0.00, G:0.31, T:0.41
Consensus pattern (13 bp):
TTGGATTAAGTGA
Found at i:7838580 original size:19 final size:20
Alignment explanation
Indices: 7838558--7838606 Score: 84
Period size: 19 Copynumber: 2.5 Consensus size: 20
7838548 TGTAAATTTT
7838558 TATTA-AAATTCCTAAAAAG
1 TATTAGAAATTCCTAAAAAG
7838577 TATTAGAAA-TCCTAAAAAG
1 TATTAGAAATTCCTAAAAAG
7838596 TATTAGAAATT
1 TATTAGAAATT
7838607 AATTAAAAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 24 0.86
20 4 0.14
ACGTcount: A:0.51, C:0.08, G:0.08, T:0.33
Consensus pattern (20 bp):
TATTAGAAATTCCTAAAAAG
Done.