Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 30 of 255
Found at i:7838711 original size:28 final size:27
Alignment explanation
Indices: 7838651--7838713 Score: 74
Period size: 28 Copynumber: 2.3 Consensus size: 27
7838641 ATAATAATTC
7838651 ATTAAA-AATTCATAAAATAATTAGAA
1 ATTAAATAATTCATAAAATAATTAGAA
** * *
7838677 AAAAAATAATTTATAAATATTATTAGAA
1 ATTAAATAATTCATAAA-ATAATTAGAA
7838705 ATTAAATAA
1 ATTAAATAA
7838714 AACTATAAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
26 4 0.14
27 9 0.31
28 16 0.55
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.33
Consensus pattern (27 bp):
ATTAAATAATTCATAAAATAATTAGAA
Found at i:7838987 original size:20 final size:19
Alignment explanation
Indices: 7838948--7839004 Score: 71
Period size: 22 Copynumber: 2.8 Consensus size: 19
7838938 TATGATTAAT
7838948 TAATTTCTAATATTTTTTTTA
1 TAATTTCTAATA--TTTTTTA
7838969 TAAATTTCTAATATTTTTTA
1 T-AATTTCTAATATTTTTTA
7838989 TAATTT-TAATGATTTT
1 TAATTTCTAAT-ATTTT
7839005 AATCATTTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
18 4 0.12
19 10 0.29
20 8 0.24
21 1 0.03
22 11 0.32
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.63
Consensus pattern (19 bp):
TAATTTCTAATATTTTTTA
Found at i:7840684 original size:18 final size:19
Alignment explanation
Indices: 7840647--7840684 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
7840637 CTAAATCGCA
*
7840647 TATAGAGTAAAAGTTCAAT
1 TATAGAGTAAAAGATCAAT
*
7840666 TATAGATTAAAA-ATCAAT
1 TATAGAGTAAAAGATCAAT
7840684 T
1 T
7840685 GAGGGATTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.50, C:0.05, G:0.11, T:0.34
Consensus pattern (19 bp):
TATAGAGTAAAAGATCAAT
Found at i:7840838 original size:15 final size:15
Alignment explanation
Indices: 7840820--7840849 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
7840810 ATAAAGATTA
7840820 TAATAATAATAAAAG
1 TAATAATAATAAAAG
7840835 TAATAATAATAAAAG
1 TAATAATAATAAAAG
7840850 AAAGAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.27
Consensus pattern (15 bp):
TAATAATAATAAAAG
Found at i:7840857 original size:15 final size:15
Alignment explanation
Indices: 7840824--7840875 Score: 54
Period size: 15 Copynumber: 3.6 Consensus size: 15
7840814 AGATTATAAT
* *
7840824 AATAATAAAAGTAAT
1 AATAATAAAAGAAAG
7840839 AATAATAAAAGAAAG
1 AATAATAAAAGAAAG
*
7840854 AATAA-AGAA-AAAG
1 AATAATAAAAGAAAG
*
7840867 AATTATAAA
1 AATAATAAA
7840876 GACATGCAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
13 8 0.26
14 5 0.16
15 18 0.58
ACGTcount: A:0.71, C:0.00, G:0.10, T:0.19
Consensus pattern (15 bp):
AATAATAAAAGAAAG
Found at i:7840857 original size:18 final size:18
Alignment explanation
Indices: 7840819--7840858 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
7840809 TATAAAGATT
*
7840819 ATAATAATAATAAAAGTA
1 ATAATAATAAAAAAAGTA
7840837 ATAATAATAAAAGAAAG-A
1 ATAATAATAAAA-AAAGTA
7840855 ATAA
1 ATAA
7840859 AGAAAAAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.23
Consensus pattern (18 bp):
ATAATAATAAAAAAAGTA
Found at i:7848835 original size:6 final size:6
Alignment explanation
Indices: 7848820--7848860 Score: 50
Period size: 6 Copynumber: 7.0 Consensus size: 6
7848810 TTAGCGAACT
*
7848820 AGAA-G AGAATG AGAATT AGAATTG -GAATG AGAATG AGAATG
1 AGAATG AGAATG AGAATG AGAA-TG AGAATG AGAATG AGAATG
7848861 GTTAGAATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
5 6 0.19
6 24 0.77
7 1 0.03
ACGTcount: A:0.49, C:0.00, G:0.32, T:0.20
Consensus pattern (6 bp):
AGAATG
Found at i:7851794 original size:19 final size:17
Alignment explanation
Indices: 7851757--7851799 Score: 50
Period size: 19 Copynumber: 2.4 Consensus size: 17
7851747 ATCTATATTC
*
7851757 AATATAATAATTTTAAT
1 AATATAATAATTCTAAT
7851774 AATATAATATTATTCTAAT
1 AATATAATA--ATTCTAAT
*
7851793 AAAATAA
1 AATATAA
7851800 CTTAATCTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 9 0.41
19 13 0.59
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (17 bp):
AATATAATAATTCTAAT
Found at i:7852525 original size:30 final size:30
Alignment explanation
Indices: 7852486--7852542 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
7852476 ATTAGTATCT
*
7852486 GTATCTGCATCTGTAACAGAATTTGTATAA
1 GTATCTGCATCTGCAACAGAATTTGTATAA
* *
7852516 GTATTTGCATCTGCAACTGAATTTGTA
1 GTATCTGCATCTGCAACAGAATTTGTA
7852543 ATTGATTTGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.30, C:0.14, G:0.18, T:0.39
Consensus pattern (30 bp):
GTATCTGCATCTGCAACAGAATTTGTATAA
Found at i:7853669 original size:19 final size:19
Alignment explanation
Indices: 7853641--7853721 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
7853631 AATCTTTAAG
*
7853641 GATATGCAATCTCAGATAT
1 GATATGCAATCTTAGATAT
*
7853660 GATATACAATCTTAGATAT
1 GATATGCAATCTTAGATAT
7853679 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
7853698 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
7853719 GAT
1 GAT
7853722 CTTGTAATCT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
19 48 0.84
21 9 0.16
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:7855557 original size:53 final size:53
Alignment explanation
Indices: 7855416--7855566 Score: 223
Period size: 53 Copynumber: 2.8 Consensus size: 53
7855406 ATAAGTGCGC
* *
7855416 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTACAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
*
7855469 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
* *
7855522 CCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGATATGTGA
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
7855567 ACCGTGTAAG
Statistics
Matches: 90, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
52 1 0.01
53 82 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:7863017 original size:19 final size:19
Alignment explanation
Indices: 7862990--7863064 Score: 73
Period size: 19 Copynumber: 3.8 Consensus size: 19
7862980 CTTCTATTTC
*
7862990 AAAAAAAAAAAGGAAAAAG
1 AAAAGAAAAAAGGAAAAAG
**
7863009 AAAAGAAAAAAATAAAAAG
1 AAAAGAAAAAAGGAAAAAG
7863028 AAAAAGAAAAAAGAGAAAAA-
1 -AAAAGAAAAAAG-GAAAAAG
7863048 AATAA-AAAAAATGGAAA
1 AA-AAGAAAAAA-GGAAA
7863065 GGCCAAGGTG
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
19 28 0.60
20 14 0.30
21 5 0.11
ACGTcount: A:0.83, C:0.00, G:0.13, T:0.04
Consensus pattern (19 bp):
AAAAGAAAAAAGGAAAAAG
Found at i:7863025 original size:25 final size:24
Alignment explanation
Indices: 7862990--7863055 Score: 80
Period size: 25 Copynumber: 2.8 Consensus size: 24
7862980 CTTCTATTTC
*
7862990 AAAAAAAAAAAGGAAAAAGAAAAG
1 AAAAAAAAAAAAGAAAAAGAAAAG
7863014 AAAAAAATAAAAAGAAAAAGAAAA-
1 AAAAAAA-AAAAAGAAAAAGAAAAG
* * *
7863038 AAGAGAAAAAAATAAAAA
1 AAAAAAAAAAAAGAAAAA
7863056 AAATGGAAAG
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
23 10 0.27
24 12 0.32
25 15 0.41
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.03
Consensus pattern (24 bp):
AAAAAAAAAAAAGAAAAAGAAAAG
Found at i:7864012 original size:44 final size:44
Alignment explanation
Indices: 7863960--7864482 Score: 340
Period size: 44 Copynumber: 11.9 Consensus size: 44
7863950 CAAGATTTGG
* * *
7863960 CATCCCTGTGTTTATAGCGAATAGATCGAAGATAGCAGATCAGA
1 CATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGA
* * * *** *
7864004 CAAT-CCTGTGCTTACAGCGAAGCAGATCGAAGATTTTAGCAT-GGA
1 C-ATCCCTGTGTTTATAGGGAA-CAGATCGAAGATAGCAG-ATCTGA
* * *
7864049 -ATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGCAGATTTGG
1 CATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGCAGATCTGA
** *
7864092 CATCCCTGTGTTTATAGGGAACAGATCGAAGATTTCAG--CATGG
1 CATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATC-TGA
* * * * *
7864135 CATCCCTGTGTTTATAGGGAATA-AGTTGAAGATAGCAGTTTTGG
1 CATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGCAGATCTGA
* *
7864179 CATCCCTGTGTTTATAGGGAATAGATCGAAGATAACAGATCTGA
1 CATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGA
* * * * * **
7864223 CA-CTCCTGTGCTTACAGCGAAGCAGATTGAGGATTTCAG--CATGA
1 CATC-CCTGTGTTTATAGGGAA-CAGATCGAAGATAGCAGATC-TGA
* * *
7864267 CATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGCAGATTTGG
1 CATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGCAGATCTGA
*
7864311 CATCCCTGTGTTTATAGGGAACAGATCGAAGATAACAGATCTGA
1 CATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGA
** * * * ** *
7864355 CA-CTCCTGTACTTACAGCGAAGCAGATCGAGGATTTCAG--CATGG
1 CATC-CCTGTGTTTATAGGGAA-CAGATCGAAGATAGCAGATC-TGA
* * *
7864399 CATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGCAGATTTGG
1 CATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGCAGATCTGA
* * * * * *
7864443 CATCTCTGTATTGT-CAGAGAGCAGATCGAAGATACCAGAT
1 CATCCCTGTGTT-TATAGGGAACAGATCGAAGATAGCAGAT
7864483 TTGGCATCTC
Statistics
Matches: 375, Mismatches: 74, Indels: 60
0.74 0.15 0.12
Matches are distributed among these distances:
42 6 0.02
43 76 0.20
44 241 0.64
45 50 0.13
46 2 0.01
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.27
Consensus pattern (44 bp):
CATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGA
Found at i:7864287 original size:132 final size:132
Alignment explanation
Indices: 7864049--7864482 Score: 633
Period size: 132 Copynumber: 3.3 Consensus size: 132
7864039 TTAGCATGGA
* * * * * * *
7864049 ATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGCAGATTTGGCA-TCCCTGTGTTTATAGGGA
1 ATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAACAGATCTGACACT-CCTGTGCTTACAGCGA
* * *
7864112 A-CAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAATAAGTTGAAGATAGCAGTTT
64 AGCAGATCGAGGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATT
7864176 TGGC
129 TGGC
*
7864180 ATCCCTGTGTTTATAGGGAATAGATCGAAGATAACAGATCTGACACTCCTGTGCTTACAGCGAAG
1 ATCCCTGTGTTTATAGGGAACAGATCGAAGATAACAGATCTGACACTCCTGTGCTTACAGCGAAG
* *
7864245 CAGATTGAGGATTTCAGCATGACATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTG
66 CAGATCGAGGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTG
7864310 GC
131 GC
*
7864312 ATCCCTGTGTTTATAGGGAACAGATCGAAGATAACAGATCTGACACTCCTGTACTTACAGCGAAG
1 ATCCCTGTGTTTATAGGGAACAGATCGAAGATAACAGATCTGACACTCCTGTGCTTACAGCGAAG
7864377 CAGATCGAGGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTG
66 CAGATCGAGGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTG
7864442 GC
131 GC
* * * * * *
7864444 ATCTCTGTATTGT-CAGAGAGCAGATCGAAGATACCAGAT
1 ATCCCTGTGTT-TATAGGGAACAGATCGAAGATAACAGAT
7864483 TTGGCATCTC
Statistics
Matches: 276, Mismatches: 23, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
131 52 0.19
132 223 0.81
133 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (132 bp):
ATCCCTGTGTTTATAGGGAACAGATCGAAGATAACAGATCTGACACTCCTGTGCTTACAGCGAAG
CAGATCGAGGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTG
GC
Found at i:7864483 original size:44 final size:44
Alignment explanation
Indices: 7864426--7864518 Score: 150
Period size: 44 Copynumber: 2.1 Consensus size: 44
7864416 GGAACAAGTT
* *
7864426 GAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATC
1 GAAGATACCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATC
*
7864470 GAAGATACCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATC
1 GAAGATACCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATC
*
7864514 AAAGA
1 GAAGA
7864519 CATAGCTGAT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (44 bp):
GAAGATACCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATC
Found at i:7864488 original size:88 final size:87
Alignment explanation
Indices: 7863956--7864495 Score: 431
Period size: 88 Copynumber: 6.1 Consensus size: 87
7863946 GAAACAAGAT
* * * ** * * *
7863956 TTGGCATCCCTGTGTTTATAGCGAA-TAGATCGAAGATAGCAGATCAGACAAT-CCTGTGCTTAC
1 TTGGCATCCCTGTGTTTATAGGGAACAAG-TTGAAGATAGCAGATTTGGC-ATCCCTGTGTTTAT
* * *
7864019 AGCGAAGCAGATCGAAGATTTTAGCA
64 AGGGAA-CAGATCGAAGATATCAG-A
*
7864045 -TGGAATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAG
1 TTGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAG
*
7864109 GGAACAGATCGAAGATTTCAGCA
66 GGAACAGATCGAAGATATCAG-A
* *
7864132 -TGGCATCCCTGTGTTTATAGGGAATAAGTTGAAGATAGCAGTTTTGGCATCCCTGTGTTTATAG
1 TTGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAG
* *
7864196 GGAATAGATCGAAGATAACAGA
66 GGAACAGATCGAAGATATCAGA
* * * * * ** *
7864218 TCTGACA-CTCCTGTGCTTACAGCGAAGC-AGATTGAGGATTTCAGCA--TGACATCCCTGTGTT
1 T-TGGCATC-CCTGTGTTTATAGGGAA-CAAG-TTGAAGATAGCAG-ATTTGGCATCCCTGTGTT
* *
7864279 TATAGGGAACA-AGTTGAAGATAGCAGA
61 TATAGGGAACAGA-TCGAAGATATCAGA
* * * * **
7864306 TTTGGCATCCCTGTGTTTATAGGGAAC-AGATCGAAGATAACAGATCTGACA-CTCCTGTACTTA
1 -TTGGCATCCCTGTGTTTATAGGGAACAAG-TTGAAGATAGCAGATTTGGCATC-CCTGTGTTTA
* * * *
7864369 CAGCGAAGCAGATCGAGGATTTCAGCA
63 TAGGGAA-CAGATCGAAGATATCAG-A
* * *
7864396 -TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCTCTGTATTGT-CA
1 TTGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTT-TATA
* * *
7864459 GAGAGCAGATCGAAGATACCAGA
65 GGGAACAGATCGAAGATATCAGA
*
7864482 TTTGGCATCTCTGT
1 -TTGGCATCCCTGT
7864496 ATTGGCGGAG
Statistics
Matches: 371, Mismatches: 58, Indels: 45
0.78 0.12 0.09
Matches are distributed among these distances:
86 3 0.01
87 129 0.35
88 208 0.56
89 29 0.08
90 2 0.01
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (87 bp):
TTGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAG
GGAACAGATCGAAGATATCAGA
Found at i:7864834 original size:205 final size:205
Alignment explanation
Indices: 7864505--7865219 Score: 1198
Period size: 205 Copynumber: 3.5 Consensus size: 205
7864495 TATTGGCGGA
* * * *
7864505 GAGCAGATCAAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGAT
1 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAACAAATCTAAGATGAT
7864570 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGACGGAGGGCAGA
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGACGGAGGGCAGA
* * *
7864635 CACATAGCAGATCCAACTTTTAGATGTTTATACTGAAGTAGATCTAAGATGGTTTGGCATCCTTG
131 CACATAGCAGATCCAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGGTTTGGCATCCTTG
7864700 TGCTTACAAG
196 TGCTTACAAG
* * *
7864710 GAGTAAATCGAAGACATAGCTGATTTGGCTTTCACATGGTTACGTTGAAACAAATCTAAGATGAT
1 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAACAAATCTAAGATGAT
* * *
7864775 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTGCACTTTGACGGAGGGCAGG
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGACGGAGGGCAGA
7864840 CACATAGCAGATCCAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGGTTTGGCATCCTTG
131 CACATAGCAGATCCAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGGTTTGGCATCCTTG
7864905 TGCTTACAAG
196 TGCTTACAAG
* **
7864915 GAGCAAATCAAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAGTAAATCTAAGATGAT
1 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAACAAATCTAAGATGAT
* *
7864980 TTGGCATCTCTGTATTGTCAGAGAACAAATTGAAGTCTGGCATCTCCACTTCGACAGAGGGCAGA
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGACGGAGGGCAGA
* *
7865045 CATATAGCAGATCCAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGGTTTGGCATTCTTG
131 CACATAGCAGATCCAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGGTTTGGCATCCTTG
7865110 TGCTTACAAG
196 TGCTTACAAG
* * *
7865120 GAGCAAGTCGAAGACATAGTTGATTTGGCTTTCACGTGCTTACGTT-AAAGCAAATCTAAGAGGA
1 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAA-CAAATCTAAGATGA
*
7865184 TTTGGCATCTCTGTATTGTCAGGGAACAAATCGAAG
65 TTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
7865220 AAGCAGATTT
Statistics
Matches: 476, Mismatches: 33, Indels: 2
0.93 0.06 0.00
Matches are distributed among these distances:
204 2 0.00
205 474 1.00
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (205 bp):
GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAACAAATCTAAGATGAT
TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGACGGAGGGCAGA
CACATAGCAGATCCAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGGTTTGGCATCCTTG
TGCTTACAAG
Found at i:7865368 original size:45 final size:45
Alignment explanation
Indices: 7865292--7865398 Score: 162
Period size: 45 Copynumber: 2.4 Consensus size: 45
7865282 TGAGTTTGCA
* *
7865292 AGGAGCAGATTGAAGA-AGCAAATTTGGCGTCTCTGTATTAGACG
1 AGGAGCAGATCGAAGATAACAAATTTGGCGTCTCTGTATTAGACG
*
7865336 GGGAGCAGATCGAAGATAACAAATTTGGCGTCTCTGTATTAGACG
1 AGGAGCAGATCGAAGATAACAAATTTGGCGTCTCTGTATTAGACG
* *
7865381 ATGAGCAGATCAAAGATA
1 AGGAGCAGATCGAAGATA
7865399 GAAGATATCG
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
44 14 0.25
45 42 0.75
ACGTcount: A:0.35, C:0.14, G:0.28, T:0.23
Consensus pattern (45 bp):
AGGAGCAGATCGAAGATAACAAATTTGGCGTCTCTGTATTAGACG
Found at i:7865783 original size:19 final size:19
Alignment explanation
Indices: 7865759--7865856 Score: 146
Period size: 19 Copynumber: 5.2 Consensus size: 19
7865749 AATCTTTAAG
*
7865759 GATATGCAATCTTATATAT
1 GATATGCAATCTTAGATAT
7865778 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
7865797 GATA--CAATCATAGATAT
1 GATATGCAATCTTAGATAT
7865814 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
7865833 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
7865854 GAT
1 GAT
7865857 CTTTTAATCT
Statistics
Matches: 72, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
17 16 0.22
19 47 0.65
21 9 0.12
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:7865789 original size:36 final size:35
Alignment explanation
Indices: 7865749--7865856 Score: 94
Period size: 36 Copynumber: 2.9 Consensus size: 35
7865739 ATGGAAATAT
*
7865749 AATCTTTAAGGATATGCAATCTTATATATGATATGC
1 AATCTTTAA-GATATGCAATCTTAGATATGATATGC
*
7865785 AATC-TT-AGATATGATACAATCATAGATATGATATGC
1 AATCTTTAAGATATG---CAATCTTAGATATGATATGC
*
7865821 AATCTTAGATATGATATGCAATCTTGAAGATATGAT
1 AATCTT---TAAGATATGCAATCTT--AGATATGAT
7865857 CTTTTAATCT
Statistics
Matches: 58, Mismatches: 4, Indels: 16
0.74 0.05 0.21
Matches are distributed among these distances:
33 6 0.10
34 1 0.02
35 2 0.03
36 26 0.45
37 1 0.02
38 6 0.10
40 10 0.17
41 6 0.10
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (35 bp):
AATCTTTAAGATATGCAATCTTAGATATGATATGC
Found at i:7866392 original size:21 final size:23
Alignment explanation
Indices: 7866341--7866393 Score: 56
Period size: 21 Copynumber: 2.3 Consensus size: 23
7866331 TGTATGTCAT
* *
7866341 TTATCTTATATGTGTATAGTTTCA
1 TTAT-TTATATGTCTATAGTTTAA
*
7866365 TTTTTTATATG-CTAT-GTTTAA
1 TTATTTATATGTCTATAGTTTAA
7866386 TTATTTAT
1 TTATTTAT
7866394 TTTATGTGCT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
21 12 0.48
22 3 0.12
23 7 0.28
24 3 0.12
ACGTcount: A:0.25, C:0.06, G:0.09, T:0.60
Consensus pattern (23 bp):
TTATTTATATGTCTATAGTTTAA
Found at i:7866420 original size:26 final size:26
Alignment explanation
Indices: 7866367--7866420 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
7866357 TAGTTTCATT
* *
7866367 TTTTATATGCTATGTTTAATTATTTA
1 TTTTATATGCTATGTTTAAATATATA
*
7866393 TTTTATGTGCTAT-TTTATAATATATA
1 TTTTATATGCTATGTTTA-AATATATA
7866419 TT
1 TT
7866421 GTTGTATAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.28, C:0.04, G:0.07, T:0.61
Consensus pattern (26 bp):
TTTTATATGCTATGTTTAAATATATA
Found at i:7868244 original size:5 final size:6
Alignment explanation
Indices: 7868225--7868275 Score: 50
Period size: 6 Copynumber: 8.5 Consensus size: 6
7868215 TACAATGTCC
* * **
7868225 TTTCTT TTTCTT TTTCTT TTTCTT CTT-GT TCCCTCT TTTCTT TTTCTT
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCT-T TTTCTT TTTCTT
7868273 TTT
1 TTT
7868276 TGTGTTCGGT
Statistics
Matches: 35, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
5 1 0.03
6 30 0.86
7 4 0.11
ACGTcount: A:0.00, C:0.22, G:0.02, T:0.76
Consensus pattern (6 bp):
TTTCTT
Found at i:7874770 original size:15 final size:16
Alignment explanation
Indices: 7874744--7874773 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
7874734 TTTGCCCGGG
7874744 CTAAAAAGCCCAACAT
1 CTAAAAAGCCCAACAT
7874760 CTAAAAA-CCCAACA
1 CTAAAAAGCCCAACA
7874774 GCCCAAAACC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.53, C:0.33, G:0.03, T:0.10
Consensus pattern (16 bp):
CTAAAAAGCCCAACAT
Found at i:7876070 original size:12 final size:11
Alignment explanation
Indices: 7876033--7876100 Score: 55
Period size: 12 Copynumber: 5.7 Consensus size: 11
7876023 TTATGTACAC
7876033 ATTATTTATATT
1 ATTA-TTATATT
* *
7876045 ATTTTTACTACT
1 ATTATTA-TATT
7876057 ATTATTATATCT
1 ATTATTATAT-T
7876069 ATTATTAGTATT
1 ATTATTA-TATT
*
7876081 AGTATTATAATT
1 ATTATTAT-ATT
*
7876093 ACTATTAT
1 ATTATTAT
7876101 TACACTTTTA
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
11 6 0.13
12 37 0.80
13 3 0.07
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.57
Consensus pattern (11 bp):
ATTATTATATT
Found at i:7876272 original size:2 final size:2
Alignment explanation
Indices: 7876265--7876343 Score: 51
Period size: 2 Copynumber: 41.5 Consensus size: 2
7876255 GTGTATGTAT
* * *
7876265 TA TA TA TA TA TA TA TT TA -A AA CTA TA T- TA TG TA TA TA T- TA
1 TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA
* * * *
7876305 TA TA TA T- TA TA TA TA TT TA T- TA TA TT TT TA TG TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7876344 TTTTAATATC
Statistics
Matches: 60, Mismatches: 11, Indels: 12
0.72 0.13 0.14
Matches are distributed among these distances:
1 5 0.08
2 54 0.90
3 1 0.02
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.56
Consensus pattern (2 bp):
TA
Found at i:7876303 original size:11 final size:10
Alignment explanation
Indices: 7876287--7876380 Score: 60
Period size: 9 Copynumber: 9.8 Consensus size: 10
7876277 TATTTAAAAC
7876287 TATATTATGTA
1 TATATTAT-TA
7876298 TATATTA-TA
1 TATATTATTA
7876307 TATATTA-TA
1 TATATTATTA
7876316 TATATTTATTA
1 TATA-TTATTA
7876327 TAT-TT-TTA
1 TATATTATTA
*
7876335 TGTA-TA-TA
1 TATATTATTA
* *
7876343 T-TTTTAATA
1 TATATTATTA
7876352 TCATATTATTCA
1 T-ATATTATT-A
*
7876364 TATATT-TTT
1 TATATTATTA
7876373 TATATTAT
1 TATATTAT
7876381 GTAAATATTT
Statistics
Matches: 68, Mismatches: 5, Indels: 21
0.72 0.05 0.22
Matches are distributed among these distances:
7 1 0.01
8 11 0.16
9 26 0.38
10 6 0.09
11 22 0.32
12 2 0.03
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (10 bp):
TATATTATTA
Found at i:7876308 original size:9 final size:9
Alignment explanation
Indices: 7876262--7876330 Score: 63
Period size: 9 Copynumber: 7.4 Consensus size: 9
7876252 AATGTGTATG
7876262 TATTATATA
1 TATTATATA
7876271 TA-TATATA
1 TATTATATA
*
7876279 T-TTAAAACTA
1 TATT-ATA-TA
7876289 TATTATGTATA
1 TATTA--TATA
7876300 TATTATATA
1 TATTATATA
7876309 TATTATATA
1 TATTATATA
7876318 TATT-TATTA
1 TATTATA-TA
7876327 TATT
1 TATT
7876331 TTTATGTATA
Statistics
Matches: 51, Mismatches: 2, Indels: 14
0.76 0.03 0.21
Matches are distributed among these distances:
8 10 0.20
9 27 0.53
10 4 0.08
11 9 0.18
12 1 0.02
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.55
Consensus pattern (9 bp):
TATTATATA
Found at i:7876357 original size:14 final size:14
Alignment explanation
Indices: 7876291--7876377 Score: 51
Period size: 14 Copynumber: 6.4 Consensus size: 14
7876281 TAAAACTATA
*
7876291 TTATGTATATA-TT
1 TTATATATATATTT
* *
7876304 ATATATATTATATATA
1 TTATATA-TATAT-TT
7876320 TT-TAT-TATATTT
1 TTATATATATATTT
*
7876332 TTATGTATATATTT
1 TTATATATATATTT
*
7876346 TTA-ATATCATATTA
1 TTATATAT-ATATTT
*
7876360 TT-CATATAT-TTT
1 TTATATATATATTT
7876372 TTATAT
1 TTATAT
7876378 TATGTAAATA
Statistics
Matches: 56, Mismatches: 10, Indels: 16
0.68 0.12 0.20
Matches are distributed among these distances:
12 7 0.12
13 19 0.34
14 25 0.45
15 3 0.05
16 2 0.04
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.61
Consensus pattern (14 bp):
TTATATATATATTT
Found at i:7876360 original size:25 final size:25
Alignment explanation
Indices: 7876332--7876417 Score: 78
Period size: 25 Copynumber: 3.6 Consensus size: 25
7876322 TATTATATTT
7876332 TTATGTATATATTTTTAATATCATA
1 TTATGTATATATTTTTAATATCATA
7876357 TTAT-TCATATA-TTTT--T-T-ATA
1 TTATGT-ATATATTTTTAATATCATA
* * *
7876377 TTATGTAAATATTTTCAATA-CTACA
1 TTATGTATATATTTTTAATATC-ATA
7876402 TTATGTATATATTTTT
1 TTATGTATATATTTTT
7876418 GTCTATATTG
Statistics
Matches: 48, Mismatches: 5, Indels: 16
0.70 0.07 0.23
Matches are distributed among these distances:
20 11 0.23
21 5 0.10
22 1 0.02
23 1 0.02
24 5 0.10
25 25 0.52
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.57
Consensus pattern (25 bp):
TTATGTATATATTTTTAATATCATA
Found at i:7876405 original size:45 final size:45
Alignment explanation
Indices: 7876314--7876417 Score: 113
Period size: 45 Copynumber: 2.2 Consensus size: 45
7876304 ATATATATTA
* * * *
7876314 TATATATTTATTATATTTTTATGTATATATTTTTAATATCATATTAT-
1 TATATATTT-TT-TA-TATTATGTAAATATTTTCAATATCACATTATG
7876361 TCATATATTTTTTATATTATGTAAATATTTTCAATA-CTACATTATG
1 T-ATATATTTTTTATATTATGTAAATATTTTCAATATC-ACATTATG
7876407 TATATATTTTT
1 TATATATTTTT
7876418 GTCTATATTG
Statistics
Matches: 50, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
44 1 0.02
45 35 0.70
46 3 0.06
47 3 0.06
48 8 0.16
ACGTcount: A:0.34, C:0.05, G:0.03, T:0.59
Consensus pattern (45 bp):
TATATATTTTTTATATTATGTAAATATTTTCAATATCACATTATG
Found at i:7876712 original size:26 final size:26
Alignment explanation
Indices: 7876682--7876733 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
7876672 ATTATGTATA
*
7876682 TATTTTTAATACTACGTATACATTTT
1 TATTTCTAATACTACGTATACATTTT
* * *
7876708 TATTTCTATTATTACGTATATATTTT
1 TATTTCTAATACTACGTATACATTTT
7876734 AATACATATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.10, G:0.04, T:0.58
Consensus pattern (26 bp):
TATTTCTAATACTACGTATACATTTT
Found at i:7877734 original size:131 final size:132
Alignment explanation
Indices: 7877556--7877798 Score: 335
Period size: 132 Copynumber: 1.8 Consensus size: 132
7877546 AACGAAAGAG
* * * * *
7877556 ATGTTCGATATTTAGCAATTCATGGAATCGTGCCCTAACGTGTTGGGTTGC-AATTTCTCGTTTG
1 ATGTTCGATATTTAGCAATTCAGGGAATAGTACCCTAACGTGCTGGGTTGCAAATCTCTCGTTTG
* * *
7877620 CTCAAAATAATCGAATGTCTCTTTAGAATTTCATTCATGTTTTCTAAAAAAAAAACTTATAAAGG
66 CTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGTTTTCTAAAAAAAAAACTTATAAAGG
7877685 AA
131 AA
* * ** *
7877687 ATGTTCGGTATTTAGCAGTTTGGGGAATAGTACCCTATCGTGCTGGGTTGCAAATCTCTCGTTTG
1 ATGTTCGATATTTAGCAATTCAGGGAATAGTACCCTAACGTGCTGGGTTGCAAATCTCTCGTTTG
* * *
7877752 TTCAAAATAATCGAATATCCCTTTGGAATTTCACTCGTGTTTTCTAA
66 CTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGTTTTCTAA
7877799 GGCGAGGCAA
Statistics
Matches: 95, Mismatches: 16, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
131 42 0.44
132 53 0.56
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.37
Consensus pattern (132 bp):
ATGTTCGATATTTAGCAATTCAGGGAATAGTACCCTAACGTGCTGGGTTGCAAATCTCTCGTTTG
CTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGTTTTCTAAAAAAAAAACTTATAAAGG
AA
Found at i:7879530 original size:46 final size:46
Alignment explanation
Indices: 7879460--7879687 Score: 305
Period size: 46 Copynumber: 5.0 Consensus size: 46
7879450 TTTGACATGA
* * * * * * * *
7879460 TGCCATAGTGTCTTTTAACTATGGTTTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
*** *
7879506 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
7879552 TGCCATGGTATCTTTCAATCATGGTCTTACACATTTCATATTAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
7879598 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
7879644 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
7879688 AGAGCACACT
Statistics
Matches: 163, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
45 4 0.02
46 159 0.98
ACGTcount: A:0.22, C:0.22, G:0.15, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:7891202 original size:24 final size:24
Alignment explanation
Indices: 7891158--7891206 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
7891148 AAATCTAGGG
7891158 AAAAATCATTTATAAAATGCGCTA
1 AAAAATCATTTATAAAATGCGCTA
7891182 AAAAATCATTTATAAAATGCGCTA
1 AAAAATCATTTATAAAATGCGCTA
7891206 A
1 A
7891207 GCATGGGGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.51, C:0.12, G:0.08, T:0.29
Consensus pattern (24 bp):
AAAAATCATTTATAAAATGCGCTA
Found at i:7892842 original size:7 final size:6
Alignment explanation
Indices: 7892811--7892888 Score: 68
Period size: 6 Copynumber: 13.0 Consensus size: 6
7892801 AAGTGAAATT
* * * * *
7892811 AATAAA AACTTAA AAT-AA AATAAA AATGAA AATAAA GATAAA AGTAGA
1 AATAAA AA-TAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
* * *
7892859 AATAAA AACAAA AATAAA GATAAA ATTAAA
1 AATAAA AATAAA AATAAA AATAAA AATAAA
7892889 TTAAACATCA
Statistics
Matches: 56, Mismatches: 14, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
5 5 0.09
6 46 0.82
7 5 0.09
ACGTcount: A:0.73, C:0.03, G:0.06, T:0.18
Consensus pattern (6 bp):
AATAAA
Found at i:7892877 original size:30 final size:28
Alignment explanation
Indices: 7892821--7892889 Score: 93
Period size: 30 Copynumber: 2.4 Consensus size: 28
7892811 AATAAAAACT
**
7892821 TAAAATAAAATAAAAATGAAAATAAAGA
1 TAAAATAAAATAAAAACAAAAATAAAGA
7892849 TAAAAGTAGAAATAAAAACAAAAATAAAGA
1 TAAAA-TA-AAATAAAAACAAAAATAAAGA
*
7892879 TAAAATTAAAT
1 TAAAATAAAAT
7892890 TAAACATCAT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
28 9 0.25
29 3 0.08
30 24 0.67
ACGTcount: A:0.72, C:0.01, G:0.07, T:0.19
Consensus pattern (28 bp):
TAAAATAAAATAAAAACAAAAATAAAGA
Found at i:7900425 original size:26 final size:26
Alignment explanation
Indices: 7900396--7900501 Score: 169
Period size: 26 Copynumber: 4.1 Consensus size: 26
7900386 TGGTACAAAT
*
7900396 TGATAATGGGTTAGGTAAATGTTCCG
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
7900422 TGATAATGGATT-GGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
7900447 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
7900473 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
7900499 TGA
1 TGA
7900502 CGGGCATTTC
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
25 22 0.30
26 51 0.70
ACGTcount: A:0.31, C:0.08, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:7900451 original size:51 final size:52
Alignment explanation
Indices: 7900396--7900501 Score: 178
Period size: 51 Copynumber: 2.1 Consensus size: 52
7900386 TGGTACAAAT
*
7900396 TGATAATGGGTTAGGTAAATGTTCCGTGATAATGGATT-GGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
* *
7900447 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
7900499 TGA
1 TGA
7900502 CGGGCATTTC
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
51 36 0.71
52 15 0.29
ACGTcount: A:0.31, C:0.08, G:0.25, T:0.36
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
Found at i:7901985 original size:28 final size:28
Alignment explanation
Indices: 7901954--7902017 Score: 69
Period size: 27 Copynumber: 2.3 Consensus size: 28
7901944 AATTACTATA
*
7901954 ATACCCCTATGTA-TGGAAAATCACTGTT
1 ATACCCCTATG-AGTGGAAAATCACCGTT
* * *
7901982 ATA-CCCTCTGAGTGTAAAATTACCGTT
1 ATACCCCTATGAGTGGAAAATCACCGTT
7902009 ATACCCCTA
1 ATACCCCTA
7902018 GGGTTAATTT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
26 1 0.03
27 21 0.72
28 7 0.24
ACGTcount: A:0.31, C:0.25, G:0.12, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGAGTGGAAAATCACCGTT
Found at i:7902163 original size:27 final size:27
Alignment explanation
Indices: 7902123--7902255 Score: 157
Period size: 27 Copynumber: 5.0 Consensus size: 27
7902113 AGGAAGCGTC
7902123 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTATGCCACAATTATCTGAT
*
7902150 CTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTATGCCACAAT-TATCTGAT
7902176 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTATGCCACAATTATCTGAT
*
7902204 CTGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTATGCCACAATTATCTG-AT
* * * *
7902231 CTAGTGACTTTGTCACAA-TATCTGA
1 CTGGTGGCTATGCCACAATTATCTGA
7902256 CAGCCTCGTT
Statistics
Matches: 94, Mismatches: 7, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
26 10 0.11
27 81 0.86
28 3 0.03
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTATGCCACAATTATCTGAT
Found at i:7902202 original size:54 final size:53
Alignment explanation
Indices: 7902120--7902228 Score: 209
Period size: 54 Copynumber: 2.0 Consensus size: 53
7902110 TGGAGGAAGC
7902120 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACA-ATATCT
7902174 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACAATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACAATATCT
7902227 GT
1 GT
7902229 ATCTAGTGAC
Statistics
Matches: 55, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
53 8 0.15
54 47 0.85
ACGTcount: A:0.18, C:0.26, G:0.23, T:0.33
Consensus pattern (53 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACAATATCT
Found at i:7902248 original size:54 final size:54
Alignment explanation
Indices: 7902120--7902255 Score: 186
Period size: 54 Copynumber: 2.5 Consensus size: 54
7902110 TGGAGGAAGC
* *
7902120 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTAGTGACTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* *
7902174 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACA-ATATCT
1 GTCCTAGTGACTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* * *
7902227 GTATCTAGTGACTTTGTCACAA-TATCTGA
1 GT-CCTAGTGACTATGCCACAATTATCTGA
7902256 CAGCCTCGTT
Statistics
Matches: 76, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
53 15 0.20
54 61 0.80
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.34
Consensus pattern (54 bp):
GTCCTAGTGACTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:7903572 original size:215 final size:215
Alignment explanation
Indices: 7903201--7903632 Score: 855
Period size: 215 Copynumber: 2.0 Consensus size: 215
7903191 TTTATCTCTG
7903201 TCGTAATCCTAGTCAATTAGATAATTAGTCTTAGTTTAAAACATCCCTTAATTCTTAAGCTAGAT
1 TCGTAATCCTAGTCAATTAGATAATTAGTCTTAGTTTAAAACATCCCTTAATTCTTAAGCTAGAT
7903266 AATAAAAAGATAGTAATTACTAGTACTTTTAGTCCTTGTGGATACGATATTTCCGATCTTACCAT
66 AATAAAAAGATAGTAATTACTAGTACTTTTAGTCCTTGTGGATACGATATTTCCGATCTTACCAT
7903331 AACTATACTACTGTTCCATAGGTACGCTCGCGTTAGTTGAATTTTTAGTTAGTTTAGCGACCATC
131 AACTATACTACTGTTCCATAGGTACGCTCGCGTTAGTTGAATTTTTAGTTAGTTTAGCGACCATC
7903396 AAAATACAAACACAATTCTA
196 AAAATACAAACACAATTCTA
7903416 TCGTAATCCTAGTCAATTAGATAATTAGTCTTAGTTTAAAACATCCCTTAATTCTTAAGCTAGAT
1 TCGTAATCCTAGTCAATTAGATAATTAGTCTTAGTTTAAAACATCCCTTAATTCTTAAGCTAGAT
*
7903481 AATAAAAAGATAGTAATTACTAGTACTTTTAGTCCTTGTGGATACGATATTTCCTATCTTACCAT
66 AATAAAAAGATAGTAATTACTAGTACTTTTAGTCCTTGTGGATACGATATTTCCGATCTTACCAT
7903546 AACTATACTACTGTTCCATAGGTACGCTCGCGTTAGTTGAATTTTTAGTTAGTTTAGCGACCATC
131 AACTATACTACTGTTCCATAGGTACGCTCGCGTTAGTTGAATTTTTAGTTAGTTTAGCGACCATC
7903611 AAAATACAAACACAATTCTA
196 AAAATACAAACACAATTCTA
7903631 TC
1 TC
7903633 CAACTAAGGC
Statistics
Matches: 216, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
215 216 1.00
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (215 bp):
TCGTAATCCTAGTCAATTAGATAATTAGTCTTAGTTTAAAACATCCCTTAATTCTTAAGCTAGAT
AATAAAAAGATAGTAATTACTAGTACTTTTAGTCCTTGTGGATACGATATTTCCGATCTTACCAT
AACTATACTACTGTTCCATAGGTACGCTCGCGTTAGTTGAATTTTTAGTTAGTTTAGCGACCATC
AAAATACAAACACAATTCTA
Found at i:7908450 original size:12 final size:12
Alignment explanation
Indices: 7908433--7908493 Score: 61
Period size: 12 Copynumber: 5.1 Consensus size: 12
7908423 TGTATCAAAG
7908433 GAGGTACAACAA
1 GAGGTACAACAA
*
7908445 GAGGTACAATAA
1 GAGGTACAACAA
* *
7908457 -AGGGTACAATAG
1 GA-GGTACAACAA
*
7908469 GATGTACAACAA
1 GAGGTACAACAA
*
7908481 GAGGTACATCAA
1 GAGGTACAACAA
7908493 G
1 G
7908494 CTGTAAAATA
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
11 1 0.03
12 38 0.95
13 1 0.03
ACGTcount: A:0.46, C:0.13, G:0.26, T:0.15
Consensus pattern (12 bp):
GAGGTACAACAA
Found at i:7908504 original size:36 final size:36
Alignment explanation
Indices: 7908431--7908509 Score: 106
Period size: 36 Copynumber: 2.2 Consensus size: 36
7908421 TATGTATCAA
*
7908431 AGGAGGTACAACAAGAGGTACAATAAAGGGTACAAT
1 AGGAGGTACAACAAGAGGTACAATAAAGGGTAAAAT
* * *
7908467 AGGATGTACAACAAGAGGTAC-ATCAAGCTGTAAAAT
1 AGGAGGTACAACAAGAGGTACAATAAAG-GGTAAAAT
7908503 AGGAGGT
1 AGGAGGT
7908510 GGTGGTCGTG
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
35 5 0.14
36 32 0.86
ACGTcount: A:0.44, C:0.11, G:0.28, T:0.16
Consensus pattern (36 bp):
AGGAGGTACAACAAGAGGTACAATAAAGGGTAAAAT
Found at i:7920988 original size:35 final size:35
Alignment explanation
Indices: 7920933--7921002 Score: 113
Period size: 35 Copynumber: 2.0 Consensus size: 35
7920923 TTATTTATTT
* **
7920933 TAAATAGAAAATTCTCTTTAAATGTATAAAAATGA
1 TAAACAGAAAATTCAATTTAAATGTATAAAAATGA
7920968 TAAACAGAAAATTCAATTTAAATGTATAAAAATGA
1 TAAACAGAAAATTCAATTTAAATGTATAAAAATGA
7921003 ATAAGGAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.54, C:0.06, G:0.09, T:0.31
Consensus pattern (35 bp):
TAAACAGAAAATTCAATTTAAATGTATAAAAATGA
Found at i:7924328 original size:27 final size:27
Alignment explanation
Indices: 7924298--7924355 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
7924288 TTTCTCTTAC
* * *
7924298 TTATCTATTTTTTAATTTTTTATATTT
1 TTATCTAATTTTTAAATTTATATATTT
* *
7924325 TTATTTAATTTTTAAATTTATGTATTT
1 TTATCTAATTTTTAAATTTATATATTT
7924352 TTAT
1 TTAT
7924356 GATTTTCTAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.71
Consensus pattern (27 bp):
TTATCTAATTTTTAAATTTATATATTT
Found at i:7924997 original size:14 final size:13
Alignment explanation
Indices: 7924978--7925011 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
7924968 CATATGTTTT
7924978 TATATTAATATTAA
1 TATATTAATA-TAA
7924992 TATATTAATATAA
1 TATATTAATATAA
7925005 -ATATTAA
1 TATATTAA
7925012 AATGCATAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 7 0.35
13 3 0.15
14 10 0.50
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (13 bp):
TATATTAATATAA
Found at i:7925998 original size:26 final size:26
Alignment explanation
Indices: 7925961--7926018 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
7925951 TGATACAAAT
7925961 TGATAATAGGTTAGGTAAATATTCCA
1 TGATAATAGGTTAGGTAAATATTCCA
* * *
7925987 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATATTCCA
7926013 TGATAA
1 TGATAA
7926019 GAATTTCATG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.36, C:0.05, G:0.22, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATATTCCA
Found at i:7929639 original size:68 final size:69
Alignment explanation
Indices: 7929558--7929689 Score: 162
Period size: 69 Copynumber: 1.9 Consensus size: 69
7929548 ATAAAATAAC
* *
7929558 AAAATAAAATATT-ATAACAATTA-ATTTTATAAAATATTAAAACAATAAAATAAATTTAT-TAT
1 AAAATAAAATATTAATAA-AATTACATTTTAAAAAATAATAAAACAATAAAA-AAATTTATATAT
7929620 TGTTTA
64 TGTTTA
* * * * *
7929626 AAAATAATATATTAATAATATTACTTTTTAAAAAATAATAAAATAATAAAAATATTTATATATT
1 AAAATAAAATATTAATAAAATTACATTTTAAAAAATAATAAAACAATAAAAAAATTTATATATT
7929690 AATGTATATA
Statistics
Matches: 54, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
68 23 0.43
69 31 0.57
ACGTcount: A:0.57, C:0.02, G:0.01, T:0.40
Consensus pattern (69 bp):
AAAATAAAATATTAATAAAATTACATTTTAAAAAATAATAAAACAATAAAAAAATTTATATATTG
TTTA
Found at i:7929751 original size:20 final size:20
Alignment explanation
Indices: 7929728--7929767 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
7929718 AATATGTTTT
*
7929728 TATATTAATATTAATATTAA
1 TATATTAATATAAATATTAA
*
7929748 TATATTAATGTAAATATTAA
1 TATATTAATATAAATATTAA
7929768 AATGCAGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (20 bp):
TATATTAATATAAATATTAA
Found at i:7934261 original size:17 final size:17
Alignment explanation
Indices: 7934233--7934278 Score: 67
Period size: 17 Copynumber: 2.8 Consensus size: 17
7934223 TAAAAACACT
7934233 CTAT-GCAAAACTGAGA
1 CTATAGCAAAACTGAGA
*
7934249 CTATAGTAAAACTGAGA
1 CTATAGCAAAACTGAGA
*
7934266 CTGTAGCAAAACT
1 CTATAGCAAAACT
7934279 AATAAAGACT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
16 4 0.15
17 22 0.85
ACGTcount: A:0.43, C:0.17, G:0.17, T:0.22
Consensus pattern (17 bp):
CTATAGCAAAACTGAGA
Found at i:7938262 original size:18 final size:17
Alignment explanation
Indices: 7938239--7938284 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 17
7938229 ATATATAAGC
7938239 ATGTATACTGAACTATAT
1 ATGTAT-CTGAACTATAT
7938257 ATGTATCTTGAACTATAT
1 ATGTATC-TGAACTATAT
7938275 ATGTATCTGA
1 ATGTATCTGA
7938285 TAAACCTGTG
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
17 4 0.15
18 23 0.85
ACGTcount: A:0.35, C:0.11, G:0.13, T:0.41
Consensus pattern (17 bp):
ATGTATCTGAACTATAT
Found at i:7940477 original size:13 final size:13
Alignment explanation
Indices: 7940459--7940521 Score: 63
Period size: 13 Copynumber: 4.8 Consensus size: 13
7940449 TTTAACAATG
7940459 CTTTTGAAAAGTA
1 CTTTTGAAAAGTA
* *
7940472 CTTTTGAAAGGTG
1 CTTTTGAAAAGTA
* * *
7940485 CTGTGGAAAAGTG
1 CTTTTGAAAAGTA
* *
7940498 TTTTTGAGAAGTA
1 CTTTTGAAAAGTA
7940511 CTTTTGAAAAG
1 CTTTTGAAAAG
7940522 CTTGGTTTAA
Statistics
Matches: 38, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
13 38 1.00
ACGTcount: A:0.32, C:0.06, G:0.25, T:0.37
Consensus pattern (13 bp):
CTTTTGAAAAGTA
Found at i:7942670 original size:22 final size:22
Alignment explanation
Indices: 7942645--7942687 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
7942635 TTATACATAC
*
7942645 TATTATATTTCATTA-TTATTAT
1 TATTATACTT-ATTATTTATTAT
7942667 TATTATACTTATTATTTATTA
1 TATTATACTTATTATTTATTA
7942688 GCCTTAGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.63
Consensus pattern (22 bp):
TATTATACTTATTATTTATTAT
Found at i:7943039 original size:7 final size:7
Alignment explanation
Indices: 7943027--7943063 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
7943017 TATTATTTTA
7943027 ATTTAAT
1 ATTTAAT
7943034 ATTTAAT
1 ATTTAAT
*
7943041 ATTTTA-
1 ATTTAAT
7943047 ATTTAAT
1 ATTTAAT
7943054 ATTTAAT
1 ATTTAAT
7943061 ATT
1 ATT
7943064 ATTTTTATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
6 5 0.19
7 22 0.81
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (7 bp):
ATTTAAT
Found at i:7943043 original size:20 final size:20
Alignment explanation
Indices: 7943015--7943063 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
7943005 TATAGTGATT
*
7943015 TTTATTATTTTAATTTAATA
1 TTTAATATTTTAATTTAATA
7943035 TTTAATATTTTAATTTAATA
1 TTTAATATTTTAATTTAATA
7943055 TTTAATATT
1 TTTAATATT
7943064 ATTTTTATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (20 bp):
TTTAATATTTTAATTTAATA
Found at i:7943072 original size:29 final size:28
Alignment explanation
Indices: 7943016--7943100 Score: 86
Period size: 29 Copynumber: 3.1 Consensus size: 28
7943006 ATAGTGATTT
* *
7943016 TTATTATTTTA-ATTTAATAT-TTAATA
1 TTATTATTTAATATTTAATATATTATTA
*
7943042 TT-TTAATTTAATATTTAATATTATTTTTA
1 TTATT-ATTTAATATTTAATA-TATTATTA
**
7943071 TTATTATTTGTTATTTAATATATTATTA
1 TTATTATTTAATATTTAATATATTATTA
7943099 TT
1 TT
7943101 GTATTTTTAT
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
25 2 0.04
26 7 0.15
27 8 0.17
28 10 0.21
29 19 0.40
30 2 0.04
ACGTcount: A:0.34, C:0.00, G:0.01, T:0.65
Consensus pattern (28 bp):
TTATTATTTAATATTTAATATATTATTA
Found at i:7943180 original size:23 final size:23
Alignment explanation
Indices: 7943139--7943187 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
7943129 TTATTACACC
*
7943139 TTTTACTATTATTACTATTGTAT
1 TTTTACTATTATTACTATTATAT
**
7943162 TTTTACTATTATTGTTATTATAT
1 TTTTACTATTATTACTATTATAT
7943185 TTT
1 TTT
7943188 CCTCTTTTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.24, C:0.06, G:0.04, T:0.65
Consensus pattern (23 bp):
TTTTACTATTATTACTATTATAT
Found at i:7943411 original size:22 final size:22
Alignment explanation
Indices: 7943386--7943431 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
7943376 TTACTATTTG
7943386 TATTTACCA-TTATTATTACTAT
1 TATTT-CCATTTATTATTACTAT
* *
7943408 TATTTTCATTTTTTATTACTAT
1 TATTTCCATTTATTATTACTAT
7943430 TA
1 TA
7943432 CTAATATCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 2 0.10
22 19 0.90
ACGTcount: A:0.28, C:0.11, G:0.00, T:0.61
Consensus pattern (22 bp):
TATTTCCATTTATTATTACTAT
Found at i:7956451 original size:44 final size:44
Alignment explanation
Indices: 7956397--7956815 Score: 310
Period size: 44 Copynumber: 9.6 Consensus size: 44
7956387 AGAATTTCAG
*
7956397 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTA
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGATAGTA
* * * * * *
7956441 ATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAATAAAG-G
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGATAGTA
* * * * *
7956484 ATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCG--CATCAG--
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGAT-AGTA
* * *
7956525 GTCTTATCTCCCTGAGATTACAGTGGAGCAGATCGAAAGAT-TTCA
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTG-AAGATAGT-A
*
7956570 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTA
1 -ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGATAGTA
* * * * *
7956615 ATCCTATCTCCCTGAGATTACAGTGGAGCAGATTAAATAAAG-G
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGATAGTA
** * * *
7956658 ATCTTATCTCCCTGA-AGTTACAGCAGAGTAGATCG--CATCAG--
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGAT-AGTA
* * ** *
7956699 GTCTTATCTCCCTGAGGTTACAGTGGAGCAGA-CCAAGGA-ATTTCA
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAA-GATA-GT-A
* * * *
7956744 GATCTTATCTCCCTGAGATTATAGCGGAGTAGATTGAAGCTAGTA
1 -ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGATAGTA
*
7956789 ATCCTATCTCCCTGAGATTACAGTGGA
1 ATCTTATCTCCCTGAGATTACAGTGGA
7956816 ACGGATTAAA
Statistics
Matches: 291, Mismatches: 60, Indels: 48
0.73 0.15 0.12
Matches are distributed among these distances:
40 1 0.00
41 58 0.20
42 7 0.02
43 54 0.19
44 99 0.34
45 7 0.02
46 62 0.21
47 3 0.01
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (44 bp):
ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGATAGTA
Found at i:7956577 original size:87 final size:84
Alignment explanation
Indices: 7956445--7956885 Score: 399
Period size: 87 Copynumber: 5.1 Consensus size: 84
7956435 ATAGTAATCC
* * * *
7956445 TATCTCCCTGAGATTACAGTGGAGCGGATTAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAG
1 TATCTCCCTGAGATTACAGTGGAGCAGATAAAATAAAGGATCTTATCTCCCTGAAGTTACAGCAG
*
7956510 AGTAGATCGCATCAGGTCT
66 AGTAGATCGCATCAGATCT
**
7956529 TATCTCCCTGAGATTACAGTGGAGCAGATCGAAAGATTTCA-GATCTTATCTCCCTG-AGATTAC
1 TATCTCCCTGAGATTACAGTGGAGCAGAT--AAA-A-TAAAGGATCTTATCTCCCTGAAG-TTAC
* * * * *
7956592 AGCGGAGCAGATTGAAGAT-AGTAATCC
61 AGCAGAGTAGATCG--CATCAG--ATCT
*
7956619 TATCTCCCTGAGATTACAGTGGAGCAGATTAAATAAAGGATCTTATCTCCCTGAAGTTACAGCAG
1 TATCTCCCTGAGATTACAGTGGAGCAGATAAAATAAAGGATCTTATCTCCCTGAAGTTACAGCAG
*
7956684 AGTAGATCGCATCAGGTCT
66 AGTAGATCGCATCAGATCT
* * ** *
7956703 TATCTCCCTGAGGTTACAGTGGAGCAGACCAAGGAATTTCA-GATCTTATCTCCCTG-AGATTAT
1 TATCTCCCTGAGATTACAGTGGAGCAGA-TAA--AA-TAAAGGATCTTATCTCCCTGAAG-TTAC
* * * * *
7956766 AGCGGAGTAGATTGAAGCTAGTAATCC
61 AGCAGAGTAGATCGCATC-AG--ATCT
* * * *
7956793 TATCTCCCTGAGATTACAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCT-AAGGTTACAGT
1 TATCTCCCTGAGATTACAGTGGAGCAGA-TAAAATAAAGGATCTTATCTCCCTGAA-GTTACAGC
**
7956857 AGAGTAGATCGTTTCAGATCT
64 AGAGTAGATCGCATCAGATCT
7956878 TATCTCCC
1 TATCTCCC
7956886 AAAGTGGAGC
Statistics
Matches: 285, Mismatches: 49, Indels: 45
0.75 0.13 0.12
Matches are distributed among these distances:
84 57 0.20
85 14 0.05
86 10 0.04
87 98 0.34
88 43 0.15
89 3 0.01
90 60 0.21
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.29
Consensus pattern (84 bp):
TATCTCCCTGAGATTACAGTGGAGCAGATAAAATAAAGGATCTTATCTCCCTGAAGTTACAGCAG
AGTAGATCGCATCAGATCT
Found at i:7956675 original size:174 final size:175
Alignment explanation
Indices: 7956380--7956885 Score: 849
Period size: 174 Copynumber: 2.9 Consensus size: 175
7956370 ATAACGAAGT
7956380 AGATCG-AAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATC
1 AGATCGAAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATC
7956444 CTATCTCCCTGAGATTACAGTGGAGCGGATTAAATAAAGGATCTTATCTCTCTGAAGTTACAGTA
66 CTATCTCCCTGAGATTACAGTGGAGCGGATTAAATAAAGGATCTTATCTCTCTGAAGTTACAGTA
7956509 GAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGGAGC
131 GAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGGAGC
7956554 AGATCGAAAG-ATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATC
1 AGATCGAAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATC
* * *
7956618 CTATCTCCCTGAGATTACAGTGGAGCAGATTAAATAAAGGATCTTATCTCCCTGAAGTTACAGCA
66 CTATCTCCCTGAGATTACAGTGGAGCGGATTAAATAAAGGATCTTATCTCTCTGAAGTTACAGTA
*
7956683 GAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTACAGTGGAGC
131 GAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGGAGC
* * * * *
7956728 AGA-CCAAGGAATTTCAGATCTTATCTCCCTGAGATTATAGCGGAGTAGATTGAAGCTAGTAATC
1 AGATCGAAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATC
*
7956792 CTATCTCCCTGAGATTACAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCT-AAGGTTACAG
66 CTATCTCCCTGAGATTACAGTGGAGCGGATT-AAATAAAGGATCTTATCTCTCTGAA-GTTACAG
** *
7956856 TAGAGTAGATCGTTTCAGATCTTATCTCCC
129 TAGAGTAGATCGCATCAGGTCTTATCTCCC
7956886 AAAGTGGAGC
Statistics
Matches: 312, Mismatches: 16, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
173 4 0.01
174 251 0.80
175 57 0.18
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (175 bp):
AGATCGAAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATC
CTATCTCCCTGAGATTACAGTGGAGCGGATTAAATAAAGGATCTTATCTCTCTGAAGTTACAGTA
GAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGGAGC
Found at i:7956841 original size:44 final size:43
Alignment explanation
Indices: 7956396--7956865 Score: 300
Period size: 44 Copynumber: 10.8 Consensus size: 43
7956386 AAGAATTTCA
* *
7956396 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGAT-AG
1 GATCTTATCTCCCTGAGATTACAGTGGAGCAGATT-AAAATCAG
* * * *
7956439 TAATCCTATCTCCCTGAGATTACAGTGGAGCGGATT-AAATAAAG
1 -GATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAAT-CAG
* * * ***
7956483 GATCTTATCTCTCTGA-AGTTACAGTAGAGTAGA-TCGCATCAG
1 GATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAATCAG
*
7956525 G-TCTTATCTCCCTGAGATTACAGTGGAGCAGATCGAAAGATTTCA-
1 GATCTTATCTCCCTGAGATTACAGTGGAGCAGAT-TAAA-A--TCAG
* *
7956570 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGAT-AG
1 GATCTTATCTCCCTGAGATTACAGTGGAGCAGATT-AAAATCAG
* * *
7956613 TAATCCTATCTCCCTGAGATTACAGTGGAGCAGATT-AAATAAAG
1 -GATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAAT-CAG
** * ***
7956657 GATCTTATCTCCCTGA-AGTTACAGCAGAGTAGA-TCGCATCAG
1 GATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAATCAG
* **
7956699 G-TCTTATCTCCCTGAGGTTACAGTGGAGCAGACCAAGGAATTTCA-
1 GATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAA--AA--TCAG
* * * * *
7956744 GATCTTATCTCCCTGAGATTATAGCGGAGTAGATT-GAAGCTAG
1 GATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATC-AG
* * * * *
7956787 TAATCCTATCTCCCTGAGATTACAGTGGAACGGATTAAAATAAAG
1 -GATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAAT-CAG
* * * * *
7956832 GATCTTATCTCTCTAAGGTTACAGTAGAGTAGAT
1 GATCTTATCTCCCTGAGATTACAGTGGAGCAGAT
7956866 CGTTTCAGAT
Statistics
Matches: 325, Mismatches: 71, Indels: 60
0.71 0.16 0.13
Matches are distributed among these distances:
41 53 0.16
42 19 0.06
43 58 0.18
44 122 0.38
45 7 0.02
46 66 0.20
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (43 bp):
GATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATCAG
Found at i:7958668 original size:3 final size:3
Alignment explanation
Indices: 7958662--7958703 Score: 75
Period size: 3 Copynumber: 14.0 Consensus size: 3
7958652 TGTTGTTTAG
*
7958662 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAC TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
7958704 CCTTACTATT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:7960065 original size:17 final size:17
Alignment explanation
Indices: 7960039--7960071 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7960029 TTATTTATTT
*
7960039 TATATGCAATATATATG
1 TATATACAATATATATG
7960056 TATATACAATATATAT
1 TATATACAATATATAT
7960072 ACGTATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.06, G:0.06, T:0.42
Consensus pattern (17 bp):
TATATACAATATATATG
Found at i:7962043 original size:24 final size:22
Alignment explanation
Indices: 7961991--7962058 Score: 84
Period size: 22 Copynumber: 3.0 Consensus size: 22
7961981 TGCACAAATG
7961991 AACAGAGAGCACTAAAGTGCTA
1 AACAGAGAGCACTAAAGTGCTA
*
7962013 TACAGAGAGCAC-AAATGTGCTA
1 AACAGAGAGCACTAAA-GTGCTA
* *
7962035 AACAAAGAGCACTTAACGTGCTA
1 AACAGAGAGCAC-TAAAGTGCTA
7962058 A
1 A
7962059 TAATAGAACG
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
21 3 0.08
22 27 0.69
23 7 0.18
24 2 0.05
ACGTcount: A:0.44, C:0.19, G:0.21, T:0.16
Consensus pattern (22 bp):
AACAGAGAGCACTAAAGTGCTA
Found at i:7963253 original size:17 final size:17
Alignment explanation
Indices: 7963227--7963260 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
7963217 ATGTGGAGGA
7963227 CTTGGAAAGATATGCAT
1 CTTGGAAAGATATGCAT
*
7963244 CTTGGTAAGATATGCAT
1 CTTGGAAAGATATGCAT
7963261 GGGGACTGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.32
Consensus pattern (17 bp):
CTTGGAAAGATATGCAT
Found at i:7967599 original size:40 final size:40
Alignment explanation
Indices: 7967555--7967631 Score: 120
Period size: 40 Copynumber: 1.9 Consensus size: 40
7967545 TACCTCTAAG
*
7967555 CATGAAAGGAAGTTGACATAGCTCTG-GGCATGTTATGGTT
1 CATGAAAGGAAGTTGACAAAGCTC-GAGGCATGTTATGGTT
*
7967595 CATGAAAGGAAGTTGGCAAAGCTCGAGGCATGTTATG
1 CATGAAAGGAAGTTGACAAAGCTCGAGGCATGTTATG
7967632 AATAACTTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
39 1 0.03
40 33 0.97
ACGTcount: A:0.30, C:0.13, G:0.31, T:0.26
Consensus pattern (40 bp):
CATGAAAGGAAGTTGACAAAGCTCGAGGCATGTTATGGTT
Found at i:7968334 original size:12 final size:12
Alignment explanation
Indices: 7968319--7968361 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
7968309 GAATAAATTC
7968319 GTTTATTGACTT
1 GTTTATTGACTT
*
7968331 GTTTA-TAAGCTT
1 GTTTATTGA-CTT
*
7968343 GTTTATTGAATT
1 GTTTATTGACTT
7968355 GTTTATT
1 GTTTATT
7968362 TATTAATGAT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
11 2 0.08
12 22 0.85
13 2 0.08
ACGTcount: A:0.21, C:0.05, G:0.16, T:0.58
Consensus pattern (12 bp):
GTTTATTGACTT
Found at i:7973975 original size:162 final size:164
Alignment explanation
Indices: 7973715--7974021 Score: 356
Period size: 162 Copynumber: 1.9 Consensus size: 164
7973705 GAGAGATGCA
*
7973715 ATAATTTGAAATATATCTTCCCAATGTCAGTTGATAATAGCCTTATGCAATTACATACTTTGAAG
1 ATAATTTGAAATATATCTTCCCAATGTCAGTTGATAATAGCCTTAGGCAATTACATACTTTGAAG
* * * * *
7973780 ATAAAGAGTTGCAGGAGCTTAGAAGGCATAATCCAATACTCACAAGTCCCATACATAAG-C-CTC
66 ATAAAGAGTTGCAGCAGATTAGAAGACATAATCCAAGACCCACAAGTCCCATACATAAGTCACTC
*
7973843 CAAAGTTTAAGGGAAATAGAAGTTGAAAATTGCG
131 CAAAGTCTAAGGGAAATAGAAGTTGAAAATTGCG
* * * * * *
7973877 ATAATTT-AAAGTATCTCTTTCCATTGTCGGTTGCA-AATAGCCTT-GGCCAATTGCATATTTTG
1 ATAATTTGAAA-TATATCTTCCCAATGTCAGTTG-ATAATAGCCTTAGG-CAATTACATACTTTG
* * * ** *
7973939 AAGATAAAGAGTTGCTCGCA-ATTGGAAGATATAATCCAAGACCCACAAGTGGCATACATATGTC
63 AAGATAAAGAGTTGC-AGCAGATTAGAAGACATAATCCAAGACCCACAAGTCCCATACATAAGTC
7974003 TACTCCAAAGTCTAAGGGA
127 -ACTCCAAAGTCTAAGGGA
7974022 GGTATGTGTA
Statistics
Matches: 119, Mismatches: 19, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
161 4 0.03
162 95 0.80
163 4 0.03
165 16 0.13
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.29
Consensus pattern (164 bp):
ATAATTTGAAATATATCTTCCCAATGTCAGTTGATAATAGCCTTAGGCAATTACATACTTTGAAG
ATAAAGAGTTGCAGCAGATTAGAAGACATAATCCAAGACCCACAAGTCCCATACATAAGTCACTC
CAAAGTCTAAGGGAAATAGAAGTTGAAAATTGCG
Found at i:7975493 original size:162 final size:162
Alignment explanation
Indices: 7975212--7975882 Score: 1009
Period size: 162 Copynumber: 4.1 Consensus size: 162
7975202 TGCGCCCAAT
* * *
7975212 TTGCAAACTTTGAACATAGAGAGGTGCTTTGGAATGGAAGAAATAATCCAAGACTCACAAGTATC
1 TTGCAAACTCTGAAGATAGAGAGGTGCTTTGGAATGGAAGAAATAATCCAACACTCACAAGTATC
* * * * *
7975277 AACGATAAGCTTTCAATGTCTAAGGGAAGTACAAGTCACAGAGTGCAATAAATTGAAATTTCTCT
66 AACCATAAACTTCCAATGCCTAAGGGAAGTACAAGTCACAGAATGCAATAAATTGAAATTTCTCT
7975342 TCCCAATGTGTGTTGCTAATAGTCTTGGGAAA
131 TCCCAATGTGTGTTGCTAATAGTCTTGGGAAA
*
7975374 TTGCAAACTCTAAAGATAGAGAGGTGCTTTGGAATGGAAGAAATAATCCAACACTCACAAGTATC
1 TTGCAAACTCTGAAGATAGAGAGGTGCTTTGGAATGGAAGAAATAATCCAACACTCACAAGTATC
* * * * * * * * ** *
7975439 AACCGTAAGCTTTCAATGTCTTAGGAAAATACAAGTCAAAGAATGCGGTAAATTGATATTTCTCT
66 AACCATAAACTTCCAATGCCTAAGGGAAGTACAAGTCACAGAATGCAATAAATTGAAATTTCTCT
7975504 TCCCAATGTGTGTTGCTAATAGTCTTGGGAAA
131 TCCCAATGTGTGTTGCTAATAGTCTTGGGAAA
*
7975536 TTGCAAACTCTAAAGATAGAGAGGTGCTTTGGAATGGAAGAAATAATCCAACACTCACAAGTATC
1 TTGCAAACTCTGAAGATAGAGAGGTGCTTTGGAATGGAAGAAATAATCCAACACTCACAAGTATC
* * * ** *
7975601 AACCACAAACTTCCAATGCCTTACGGAAGTACAAGTCATTGAATGCAATAATTTGAAATTTCTCT
66 AACCATAAACTTCCAATGCCTAAGGGAAGTACAAGTCACAGAATGCAATAAATTGAAATTTCTCT
7975666 TCCCAATGTGTGTTGCTAATAGTCTTGGGAAA
131 TCCCAATGTGTGTTGCTAATAGTCTTGGGAAA
* * *
7975698 TTGCAAACTCTGAAGATAGAGTGGTGCTTTAGAATTGAAGAAATAATCCAACACTCACAAGTATC
1 TTGCAAACTCTGAAGATAGAGAGGTGCTTTGGAATGGAAGAAATAATCCAACACTCACAAGTATC
* * * *
7975763 AACCATAAAATTCCAATGCCTAAGGGAAGTACAAGTCACGGAATGCAATAATTTGAAATATCTCT
66 AACCATAAACTTCCAATGCCTAAGGGAAGTACAAGTCACAGAATGCAATAAATTGAAATTTCTCT
* *
7975828 TCCCAATGTGTGTTGCTAATAGTCTTGAGCAA
131 TCCCAATGTGTGTTGCTAATAGTCTTGGGAAA
*
7975860 TTGCAAATTCTGAAGATAGAGAG
1 TTGCAAACTCTGAAGATAGAGAG
7975883 CTGTTCCCAA
Statistics
Matches: 466, Mismatches: 43, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
162 466 1.00
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (162 bp):
TTGCAAACTCTGAAGATAGAGAGGTGCTTTGGAATGGAAGAAATAATCCAACACTCACAAGTATC
AACCATAAACTTCCAATGCCTAAGGGAAGTACAAGTCACAGAATGCAATAAATTGAAATTTCTCT
TCCCAATGTGTGTTGCTAATAGTCTTGGGAAA
Found at i:7977915 original size:24 final size:24
Alignment explanation
Indices: 7977883--7977973 Score: 101
Period size: 24 Copynumber: 3.5 Consensus size: 24
7977873 GACCAAAGAG
7977883 GAAGATGAAAGTGATTTTGAATAT
1 GAAGATGAAAGTGATTTTGAATAT
7977907 GAAGATGAAAGTGATGAAGTGATTTTGAATAT
1 G-A-A-G--A-TGA--AAGTGATTTTGAATAT
7977939 GAAGATGAAAGTGATTTTGAATAT
1 GAAGATGAAAGTGATTTTGAATAT
*
7977963 GAAGGTGAAAG
1 GAAGATGAAAG
7977974 CACAGGTACA
Statistics
Matches: 58, Mismatches: 1, Indels: 16
0.77 0.01 0.21
Matches are distributed among these distances:
24 27 0.47
25 1 0.02
26 4 0.07
27 2 0.03
29 2 0.03
30 4 0.07
31 1 0.02
32 17 0.29
ACGTcount: A:0.42, C:0.00, G:0.29, T:0.30
Consensus pattern (24 bp):
GAAGATGAAAGTGATTTTGAATAT
Found at i:7977928 original size:32 final size:33
Alignment explanation
Indices: 7977886--7977953 Score: 129
Period size: 32 Copynumber: 2.1 Consensus size: 33
7977876 CAAAGAGGAA
7977886 GATGAAAGTGATTTTGAATATGAAGATGAAAGT
1 GATGAAAGTGATTTTGAATATGAAGATGAAAGT
7977919 GATG-AAGTGATTTTGAATATGAAGATGAAAGT
1 GATGAAAGTGATTTTGAATATGAAGATGAAAGT
7977951 GAT
1 GAT
7977954 TTTGAATATG
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 31 0.89
33 4 0.11
ACGTcount: A:0.41, C:0.00, G:0.28, T:0.31
Consensus pattern (33 bp):
GATGAAAGTGATTTTGAATATGAAGATGAAAGT
Found at i:7978478 original size:24 final size:24
Alignment explanation
Indices: 7978446--7978499 Score: 108
Period size: 24 Copynumber: 2.2 Consensus size: 24
7978436 GACCAAAGAG
7978446 GAAGATGAAAGTGATTTTGAATAT
1 GAAGATGAAAGTGATTTTGAATAT
7978470 GAAGATGAAAGTGATTTTGAATAT
1 GAAGATGAAAGTGATTTTGAATAT
7978494 GAAGAT
1 GAAGAT
7978500 AAACAGGTAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.43, C:0.00, G:0.26, T:0.31
Consensus pattern (24 bp):
GAAGATGAAAGTGATTTTGAATAT
Found at i:7985383 original size:30 final size:31
Alignment explanation
Indices: 7985333--7985416 Score: 109
Period size: 30 Copynumber: 2.7 Consensus size: 31
7985323 ATAAAATATT
*
7985333 AAAACAATAAAATAAAATTATTA-TTGTTT-A
1 AAAATAATAAAATAAAATTATTACTT-TTTAA
* *
7985363 AAAATAATATAATAATATTATTACTTTTTAA
1 AAAATAATAAAATAAAATTATTACTTTTTAA
*
7985394 AAAATAATAAAATAAAAATATTA
1 AAAATAATAAAATAAAATTATTA
7985417 AAAAATTAGT
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
30 23 0.50
31 23 0.50
ACGTcount: A:0.60, C:0.02, G:0.01, T:0.37
Consensus pattern (31 bp):
AAAATAATAAAATAAAATTATTACTTTTTAA
Found at i:7987046 original size:29 final size:28
Alignment explanation
Indices: 7987001--7987072 Score: 99
Period size: 29 Copynumber: 2.5 Consensus size: 28
7986991 CGGGTTAGGA
*
7987001 TGGGAAGGGAGTAAAAGTTTTGGGGGAAAG
1 TGGGAA-GGAGTAAAAGTTTTGGAGG-AAG
*
7987031 TGGGAAGGAGTGAAAGTTTTGGAGGAAG
1 TGGGAAGGAGTAAAAGTTTTGGAGGAAG
*
7987059 TGGGAAGAAGTAAA
1 TGGGAAGGAGTAAA
7987073 NNNNNNNNNN
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 15 0.39
29 17 0.45
30 6 0.16
ACGTcount: A:0.36, C:0.00, G:0.44, T:0.19
Consensus pattern (28 bp):
TGGGAAGGAGTAAAAGTTTTGGAGGAAG
Found at i:7998279 original size:18 final size:18
Alignment explanation
Indices: 7998258--7998360 Score: 98
Period size: 18 Copynumber: 5.7 Consensus size: 18
7998248 AATTTCATTT
* * *
7998258 AGTAACATTCAATCATTC
1 AGTAACAATCAGTTATTC
* *
7998276 AGTAGCAATTAGTTATTC
1 AGTAACAATCAGTTATTC
* **
7998294 AGTAACAATCATTTGCTC
1 AGTAACAATCAGTTATTC
*
7998312 AGTAGCAATCAGTTATTC
1 AGTAACAATCAGTTATTC
* *
7998330 AGTAACGATCAATTATTC
1 AGTAACAATCAGTTATTC
*
7998348 AGTAACAGTCAGT
1 AGTAACAATCAGT
7998361 CGTTCAGTAT
Statistics
Matches: 65, Mismatches: 20, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
18 65 1.00
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.33
Consensus pattern (18 bp):
AGTAACAATCAGTTATTC
Found at i:7998298 original size:36 final size:35
Alignment explanation
Indices: 7998258--7998369 Score: 116
Period size: 36 Copynumber: 3.1 Consensus size: 35
7998248 AATTTCATTT
* *
7998258 AGTAACATTCAATCATTCAGTAGCAATTAGTTATTC
1 AGTAACA-TCAATTATTCAGTAGCAATCAGTTATTC
* **
7998294 AGTAACAATCATTTGCTCAGTAGCAATCAGTTATTC
1 AGTAAC-ATCAATTATTCAGTAGCAATCAGTTATTC
* * **
7998330 AGTAACGATCAATTATTCAGTAACAGTCAGTCGTTC
1 AGTAAC-ATCAATTATTCAGTAGCAATCAGTTATTC
7998366 AGTA
1 AGTA
7998370 TTTTTATTTA
Statistics
Matches: 62, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
36 61 0.98
37 1 0.02
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.33
Consensus pattern (35 bp):
AGTAACATCAATTATTCAGTAGCAATCAGTTATTC
Found at i:7999842 original size:28 final size:28
Alignment explanation
Indices: 7999782--7999843 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
7999772 ATATAATTAT
*
7999782 TTAATTAATAAATATCTTTTACTTAATA
1 TTAAATAATAAATATCTTTTACTTAATA
*
7999810 ATAAATAATAAATATCTATTTACTTAA-A
1 TTAAATAATAAATATCT-TTTACTTAATA
7999838 TTAAAT
1 TTAAAT
7999844 GTAATTAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
28 21 0.70
29 9 0.30
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.45
Consensus pattern (28 bp):
TTAAATAATAAATATCTTTTACTTAATA
Found at i:8000205 original size:20 final size:20
Alignment explanation
Indices: 8000159--8000206 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
8000149 AGTCTTTCTT
*
8000159 CCTAATTACTCTTAATTAAG
1 CCTAATTACACTTAATTAAG
8000179 -CTAAATT-CACTTAATTAAAG
1 CCT-AATTACACTTAATT-AAG
8000199 CCTAATTA
1 CCTAATTA
8000207 ACCACTCGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
19 10 0.43
20 11 0.48
21 2 0.09
ACGTcount: A:0.40, C:0.19, G:0.04, T:0.38
Consensus pattern (20 bp):
CCTAATTACACTTAATTAAG
Found at i:8001049 original size:16 final size:16
Alignment explanation
Indices: 8001030--8001080 Score: 63
Period size: 16 Copynumber: 3.4 Consensus size: 16
8001020 CTTTTTTTTA
8001030 TAATTTCAGTTTTACT
1 TAATTTCAGTTTTACT
**
8001046 TAATTTTTG-TTT--T
1 TAATTTCAGTTTTACT
8001059 TAATTTCAGTTTTACT
1 TAATTTCAGTTTTACT
8001075 TAATTT
1 TAATTT
8001081 TAAACATGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
13 8 0.29
14 3 0.11
15 3 0.11
16 14 0.50
ACGTcount: A:0.24, C:0.08, G:0.06, T:0.63
Consensus pattern (16 bp):
TAATTTCAGTTTTACT
Found at i:8001062 original size:29 final size:28
Alignment explanation
Indices: 8001021--8001081 Score: 104
Period size: 29 Copynumber: 2.1 Consensus size: 28
8001011 ATTGACGTTC
8001021 TTTTTTTTATAATTTCAGTTTTACTTAA
1 TTTTTTTTATAATTTCAGTTTTACTTAA
*
8001049 TTTTTGTTTTTAATTTCAGTTTTACTTAA
1 TTTTT-TTTATAATTTCAGTTTTACTTAA
8001078 TTTT
1 TTTT
8001082 AAACATGATT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
28 5 0.16
29 26 0.84
ACGTcount: A:0.21, C:0.07, G:0.05, T:0.67
Consensus pattern (28 bp):
TTTTTTTTATAATTTCAGTTTTACTTAA
Found at i:8009173 original size:24 final size:24
Alignment explanation
Indices: 8009126--8009308 Score: 118
Period size: 24 Copynumber: 7.2 Consensus size: 24
8009116 ACAAAATAAC
* *
8009126 ATATAAAACAATTTGAAGTAAATA
1 ATATAAAACAATTTAAAATAAATA
* *
8009150 GTATAAAACAATTTAAAATGAATA
1 ATATAAAACAATTTAAAATAAATA
8009174 ATATGTAAAACAAATATTAAAATAAATAA
1 ATA--TAAAAC-AAT-TTAAAATAAAT-A
*
8009203 TATATAAAACAATTCAAAATAAATA
1 -ATATAAAACAATTTAAAATAAATA
* * * *
8009228 ATTTACAAGACACTTTAAAA-GAA-C
1 ATATA-AA-ACAATTTAAAATAAATA
* * * *
8009252 ATATAAAAGAGTTTAAGATAGATA
1 ATATAAAACAATTTAAAATAAATA
*
8009276 ATATGTAAAACGAAATTTAAAATAAGTA
1 ATA--TAAAAC--AATTTAAAATAAATA
8009304 ATATA
1 ATATA
8009309 CAACGCAGTT
Statistics
Matches: 121, Mismatches: 24, Indels: 26
0.71 0.14 0.15
Matches are distributed among these distances:
22 8 0.07
23 3 0.02
24 33 0.27
25 5 0.04
26 32 0.26
27 6 0.05
28 30 0.25
29 1 0.01
30 3 0.02
ACGTcount: A:0.58, C:0.05, G:0.08, T:0.28
Consensus pattern (24 bp):
ATATAAAACAATTTAAAATAAATA
Found at i:8009228 original size:26 final size:26
Alignment explanation
Indices: 8009119--8009308 Score: 131
Period size: 26 Copynumber: 7.4 Consensus size: 26
8009109 AAACAAAACA
* * *
8009119 AAATAACATATAAAACAATTTGAAGT
1 AAATAATATATAAAACAATTTAAAAT
*
8009145 AAAT-A-GTATAAAACAATTTAAAAT
1 AAATAATATATAAAACAATTTAAAAT
* *
8009169 GAATAATATGTAAAACAAATATTAAAAT
1 AAATAATATATAAAAC-AAT-TTAAAAT
*
8009197 AAATAATATATAAAACAATTCAAAAT
1 AAATAATATATAAAACAATTTAAAAT
* * * *
8009223 AAATAATTTACAAGACACTTT---A-
1 AAATAATATATAAAACAATTTAAAAT
* * * * *
8009245 AAAGAACATATAAAAGAGTTTAAGAT
1 AAATAATATATAAAACAATTTAAAAT
* *
8009271 AGATAATATGTAAAACGAAATTTAAAAT
1 AAATAATATATAAAAC--AATTTAAAAT
*
8009299 AAGTAATATA
1 AAATAATATA
8009309 CAACGCAGTT
Statistics
Matches: 123, Mismatches: 31, Indels: 18
0.72 0.18 0.10
Matches are distributed among these distances:
22 14 0.11
23 1 0.01
24 19 0.15
25 3 0.02
26 44 0.36
27 6 0.05
28 36 0.29
ACGTcount: A:0.59, C:0.06, G:0.07, T:0.28
Consensus pattern (26 bp):
AAATAATATATAAAACAATTTAAAAT
Found at i:8009378 original size:26 final size:26
Alignment explanation
Indices: 8009342--8009401 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 26
8009332 AATAAAAGAT
*
8009342 ATATATATAATAGTTCAAAACAAATA
1 ATATATATAATAATTCAAAACAAATA
* *
8009368 ATATATATAATAATTTAAAATAAATA
1 ATATATATAATAATTCAAAACAAATA
8009394 A-ATA-ATAA
1 ATATATATAA
8009402 AAGGGTTTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
24 4 0.13
25 3 0.10
26 24 0.77
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.33
Consensus pattern (26 bp):
ATATATATAATAATTCAAAACAAATA
Found at i:8009460 original size:50 final size:50
Alignment explanation
Indices: 8009382--8009501 Score: 152
Period size: 50 Copynumber: 2.4 Consensus size: 50
8009372 ATATAATAAT
** * *
8009382 TTAAAATAAATAAATAATAAAAGGGTTTAAAATAAGTAATACAGGGAAA-AC
1 TTAAAATAAAT-AATAATAAAACAGTTTAAAATAA-TAATACAAGAAAAGAC
* * *
8009433 TTAAAATATATAATAATAAAACAGTTTAAAATGATAATATAAGAAAAGAC
1 TTAAAATAAATAATAATAAAACAGTTTAAAATAATAATACAAGAAAAGAC
8009483 TTAAAATAAATAATAATAA
1 TTAAAATAAATAATAATAA
8009502 TAAAACAATT
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
49 10 0.17
50 40 0.67
51 10 0.17
ACGTcount: A:0.61, C:0.03, G:0.09, T:0.27
Consensus pattern (50 bp):
TTAAAATAAATAATAATAAAACAGTTTAAAATAATAATACAAGAAAAGAC
Found at i:8009495 original size:26 final size:26
Alignment explanation
Indices: 8009382--8009506 Score: 80
Period size: 25 Copynumber: 4.9 Consensus size: 26
8009372 ATATAATAAT
* **
8009382 TTAAAATAAATAA-ATAATAAAAGGGT
1 TTAAAATAAATAATATAAGAAAA-GAC
* * * *
8009408 TTAAAATAAGTAATACAGGGAAA-AC
1 TTAAAATAAATAATATAAGAAAAGAC
* * *
8009433 TTAAAATATATAATAATAA-AACAG-T
1 TTAAAATAAATAAT-ATAAGAAAAGAC
*
8009458 TTAAAAT-GATAATATAAGAAAAGAC
1 TTAAAATAAATAATATAAGAAAAGAC
*
8009483 TTAAAATAAATAATAATAATAAAA
1 TTAAAATAAATAAT-ATAAGAAAA
8009507 CAATTTTCTT
Statistics
Matches: 73, Mismatches: 19, Indels: 13
0.70 0.18 0.12
Matches are distributed among these distances:
23 4 0.05
24 9 0.12
25 28 0.38
26 19 0.26
27 13 0.18
ACGTcount: A:0.62, C:0.03, G:0.09, T:0.26
Consensus pattern (26 bp):
TTAAAATAAATAATATAAGAAAAGAC
Found at i:8011200 original size:18 final size:18
Alignment explanation
Indices: 8011177--8011214 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
8011167 ATTTAGGCCC
8011177 TTTATAATTTATAAAATT
1 TTTATAATTTATAAAATT
8011195 TTTATAATTTATAAAATT
1 TTTATAATTTATAAAATT
8011213 TT
1 TT
8011215 AAATTAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (18 bp):
TTTATAATTTATAAAATT
Found at i:8013031 original size:21 final size:21
Alignment explanation
Indices: 8013007--8013048 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
8012997 TTTCTCTCAC
8013007 TTATCTATTTTT-TTAAATTTT
1 TTATCTATTTTTATT-AATTTT
8013028 TTATCTATTTTTATTAATTTT
1 TTATCTATTTTTATTAATTTT
8013049 CAAATTTATG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 18 0.90
22 2 0.10
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (21 bp):
TTATCTATTTTTATTAATTTT
Found at i:8013072 original size:25 final size:25
Alignment explanation
Indices: 8013027--8013080 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 25
8013017 TTTTAAATTT
8013027 TTTATCTATTTTTATTAATTTTCAAA
1 TTTATCTATTTTTA-TAATTTTCAAA
* *
8013053 TTTATGTATTTTTA-AGATTTTCTAA
1 TTTATCTATTTTTATA-ATTTTCAAA
8013078 TTT
1 TTT
8013081 TAAAAAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 1 0.04
25 11 0.44
26 13 0.52
ACGTcount: A:0.28, C:0.06, G:0.04, T:0.63
Consensus pattern (25 bp):
TTTATCTATTTTTATAATTTTCAAA
Found at i:8013629 original size:27 final size:28
Alignment explanation
Indices: 8013559--8013629 Score: 78
Period size: 27 Copynumber: 2.6 Consensus size: 28
8013549 ATATTAAAAC
8013559 AATAA-AATAAAATTATTATTGTTTAAA
1 AATAATAATAAAATTATTATTGTTTAAA
**
8013586 AATAAT-ATATTATTATTACTT-TTTAAA
1 AATAATAATAAAATTATTA-TTGTTTAAA
*
8013613 AA-AATAATAAAAATATT
1 AATAATAATAAAATTATT
8013630 TGTATATTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
26 3 0.08
27 31 0.86
28 2 0.06
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.42
Consensus pattern (28 bp):
AATAATAATAAAATTATTATTGTTTAAA
Found at i:8013704 original size:12 final size:14
Alignment explanation
Indices: 8013674--8013707 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
8013664 TATATGTTTT
8013674 TATATTAATAGTAA
1 TATATTAATAGTAA
8013688 TATATTAAT-GTAA
1 TATATTAATAGTAA
8013701 -ATATTAA
1 TATATTAA
8013708 AATGAATAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 7 0.35
13 4 0.20
14 9 0.45
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (14 bp):
TATATTAATAGTAA
Found at i:8014048 original size:21 final size:21
Alignment explanation
Indices: 8014024--8014066 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
8014014 AATGCGTGAC
8014024 TTAACTTGTAGATCAATCACT
1 TTAACTTGTAGATCAATCACT
8014045 TTAACTTGTAGATCAATCACT
1 TTAACTTGTAGATCAATCACT
8014066 T
1 T
8014067 CAAATAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.33, C:0.19, G:0.09, T:0.40
Consensus pattern (21 bp):
TTAACTTGTAGATCAATCACT
Found at i:8020079 original size:38 final size:37
Alignment explanation
Indices: 8020037--8020110 Score: 89
Period size: 38 Copynumber: 2.0 Consensus size: 37
8020027 TTGTTATTGC
8020037 TAATTT-CGAAAAATACTAA-ATAATTTGTAATAGAAAAA
1 TAATTTACG-AAAATACTAAGATAATTT-TAATA-AAAAA
* *
8020075 TAATTTATGAAAATATTAAGATAATTTTAATAAAAA
1 TAATTTACGAAAATACTAAGATAATTTTAATAAAAA
8020111 GTAAAGTTGA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
37 4 0.12
38 20 0.62
39 8 0.25
ACGTcount: A:0.55, C:0.03, G:0.07, T:0.35
Consensus pattern (37 bp):
TAATTTACGAAAATACTAAGATAATTTTAATAAAAAA
Found at i:8024547 original size:14 final size:15
Alignment explanation
Indices: 8024525--8024558 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 15
8024515 ATTCCATTGC
8024525 TTCTTCTTCTGTTTTCT
1 TTCTTCTTC--TTTTCT
8024542 TTCTTCTTCTTTTCT
1 TTCTTCTTCTTTTCT
8024557 TT
1 TT
8024559 TTGCTCGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.47
17 9 0.53
ACGTcount: A:0.00, C:0.24, G:0.03, T:0.74
Consensus pattern (15 bp):
TTCTTCTTCTTTTCT
Found at i:8028839 original size:3 final size:3
Alignment explanation
Indices: 8028831--8028868 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
8028821 CCCATTTTCC
8028831 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
8028869 CCTTTATTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:8033424 original size:41 final size:40
Alignment explanation
Indices: 8033372--8033581 Score: 278
Period size: 41 Copynumber: 5.1 Consensus size: 40
8033362 GCAAAAATTG
* *
8033372 TAAAACACAGAGCAATAGCGGCG-TTTTAGTAAAAAACGCCGC
1 TAAAAC-CAGAGCATTAGCGGCGCTTTTGGT--AAAACGCCGC
* *
8033414 TAAAAACAGAGCATTAACGGCGCTTTTGGTAAAACGCCGC
1 TAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
* * **
8033454 TAAAGACCCGAGCATTAGCGGGGCTTTTGGTAAAACAACGC
1 TAAA-ACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
8033495 TAAAGACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
1 TAAA-ACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
*
8033536 TATAGACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
1 TA-AAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
8033577 TAAAA
1 TAAAA
8033582 GTCATATAAC
Statistics
Matches: 149, Mismatches: 16, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
40 16 0.11
41 121 0.81
42 12 0.08
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.20
Consensus pattern (40 bp):
TAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
Found at i:8033760 original size:14 final size:14
Alignment explanation
Indices: 8033738--8033815 Score: 66
Period size: 14 Copynumber: 5.2 Consensus size: 14
8033728 TTAATTATCA
*
8033738 TTATAGTTTAAGGT
1 TTATGGTTTAAGGT
*
8033752 TTATGGTTTAAGAT
1 TTATGGTTTAAGGT
*
8033766 ATATGGGTTTAAGGT
1 TTAT-GGTTTAAGGT
*
8033781 TTATGAGTTAACTATGGT
1 TTATG-GTT---TAAGGT
*
8033799 TTAGGGTTTAAGGT
1 TTATGGTTTAAGGT
8033813 TTA
1 TTA
8033816 AGAGTTAACT
Statistics
Matches: 51, Mismatches: 8, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
14 24 0.47
15 15 0.29
17 3 0.06
18 9 0.18
ACGTcount: A:0.27, C:0.01, G:0.26, T:0.46
Consensus pattern (14 bp):
TTATGGTTTAAGGT
Found at i:8033892 original size:14 final size:15
Alignment explanation
Indices: 8033870--8033966 Score: 64
Period size: 14 Copynumber: 6.7 Consensus size: 15
8033860 GGGATTATGA
*
8033870 TTTAAGGTTTAAGGG
1 TTTAGGGTTTAAGGG
8033885 -TTAGGG-TT--GGAG
1 TTTAGGGTTTAAGG-G
* *
8033897 TTTAAGGTGTAAGGG
1 TTTAGGGTTTAAGGG
8033912 TTTAGGG-TTAAGGG
1 TTTAGGGTTTAAGGG
* *
8033926 TTTAGTGTTTATGGG
1 TTTAGGGTTTAAGGG
*
8033941 -ATATGGG-TTAAGAGG
1 TTTA-GGGTTTAAG-GG
8033956 TTTAGGGTTTA
1 TTTAGGGTTTA
8033967 GATTAATTAG
Statistics
Matches: 61, Mismatches: 11, Indels: 19
0.67 0.12 0.21
Matches are distributed among these distances:
11 2 0.03
12 1 0.02
13 7 0.11
14 24 0.39
15 20 0.33
16 7 0.11
ACGTcount: A:0.23, C:0.00, G:0.38, T:0.39
Consensus pattern (15 bp):
TTTAGGGTTTAAGGG
Found at i:8033935 original size:7 final size:7
Alignment explanation
Indices: 8033853--8033967 Score: 58
Period size: 7 Copynumber: 16.1 Consensus size: 7
8033843 GATGAATTAT
8033853 GGGTTTA
1 GGGTTTA
*
8033860 GGGATTA
1 GGGTTTA
* *
8033867 TGATTTA
1 GGGTTTA
*
8033874 AGGTTTAA
1 GGGTTT-A
8033882 GGG-TTA
1 GGGTTTA
8033888 GGG-TT-
1 GGGTTTA
8033893 GGAGTTTA
1 GG-GTTTA
* *
8033901 AGGTGTAA
1 GGGT-TTA
8033909 GGGTTTA
1 GGGTTTA
*
8033916 GGGTTAA
1 GGGTTTA
8033923 GGGTTTA
1 GGGTTTA
*
8033930 GTGTTTA
1 GGGTTTA
*
8033937 TGGG-ATA
1 -GGGTTTA
*
8033944 TGGGTTAA
1 -GGGTTTA
8033952 GAGGTTTA
1 G-GGTTTA
8033960 GGGTTTA
1 GGGTTTA
8033967 G
1 G
8033968 ATTAATTAGT
Statistics
Matches: 81, Mismatches: 19, Indels: 16
0.70 0.16 0.14
Matches are distributed among these distances:
5 2 0.02
6 7 0.09
7 54 0.67
8 18 0.22
ACGTcount: A:0.23, C:0.00, G:0.39, T:0.38
Consensus pattern (7 bp):
GGGTTTA
Found at i:8034656 original size:15 final size:15
Alignment explanation
Indices: 8034636--8034665 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
8034626 ATAAAAAAAC
8034636 GCCGCAAAATTTTTT
1 GCCGCAAAATTTTTT
8034651 GCCGCAAAATTTTTT
1 GCCGCAAAATTTTTT
8034666 ACAAGAAACG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.20, G:0.13, T:0.40
Consensus pattern (15 bp):
GCCGCAAAATTTTTT
Found at i:8036748 original size:21 final size:22
Alignment explanation
Indices: 8036706--8036749 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
8036696 GACAATTTAT
* *
8036706 TTGAATCTGTCTAATTGTATTA
1 TTGAATCTGTCTAAGTGAATTA
*
8036728 TTGAA-CTGTCTTAGTGAATTA
1 TTGAATCTGTCTAAGTGAATTA
8036749 T
1 T
8036750 GTGGTTTACT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.27, C:0.09, G:0.16, T:0.48
Consensus pattern (22 bp):
TTGAATCTGTCTAAGTGAATTA
Found at i:8038156 original size:43 final size:42
Alignment explanation
Indices: 8038043--8038183 Score: 192
Period size: 43 Copynumber: 3.3 Consensus size: 42
8038033 GCTTATATTT
* * *
8038043 TTTAGTGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTTTGTTC
1 TTTAGTGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTATGGTC
* * * *
8038085 CTTAGCGGCGTTTGTAAAAAAAGCGCCGCTGAAGGTCATGGTC
1 TTTAGTGGCGTTTGTGAAAAAAGCGCCGCTAAAGGT-ATGGTC
*
8038128 TTTAGTGGCGTTTGTGAAAAAAGTGCCGCTAAAGGTTATGGTC
1 TTTAGTGGCGTTTGTGAAAAAAGCGCCGCTAAAGG-TATGGTC
8038171 TTTAGTGGCGTTT
1 TTTAGTGGCGTTT
8038184 TTTTAAATAA
Statistics
Matches: 85, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
42 31 0.36
43 53 0.62
44 1 0.01
ACGTcount: A:0.23, C:0.15, G:0.30, T:0.32
Consensus pattern (42 bp):
TTTAGTGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTATGGTC
Found at i:8042109 original size:15 final size:15
Alignment explanation
Indices: 8042089--8042142 Score: 54
Period size: 15 Copynumber: 3.3 Consensus size: 15
8042079 ATACTACAAA
8042089 ATATTTATTATTAAT
1 ATATTTATTATTAAT
*
8042104 ATATTTATAATTGTAAT
1 ATATTTATTA-T-TAAT
*
8042121 AAATATTTATTATTAAA
1 --ATATTTATTATTAAT
8042138 ATATT
1 ATATT
8042143 AATATAGAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
15 14 0.44
16 1 0.03
17 7 0.22
18 1 0.03
19 9 0.28
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATATTTATTATTAAT
Found at i:8042206 original size:16 final size:16
Alignment explanation
Indices: 8042175--8042211 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
8042165 ATGTAAATAA
8042175 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
8042191 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
8042207 TATTA
1 TATTA
8042212 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:8042244 original size:20 final size:22
Alignment explanation
Indices: 8042219--8042264 Score: 69
Period size: 20 Copynumber: 2.2 Consensus size: 22
8042209 TTAAAATAAA
*
8042219 ATTAAAATATTAAA-TA-ATTT
1 ATTAAAATAATAAATTATATTT
8042239 ATTAAAATAATAAATTATATTT
1 ATTAAAATAATAAATTATATTT
8042261 ATTA
1 ATTA
8042265 TATCACTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 13 0.57
21 2 0.09
22 8 0.35
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (22 bp):
ATTAAAATAATAAATTATATTT
Found at i:8042938 original size:52 final size:52
Alignment explanation
Indices: 8042881--8042987 Score: 214
Period size: 52 Copynumber: 2.1 Consensus size: 52
8042871 CAATTTAAAC
8042881 ACTATTAAATTTGAAAGTAAGCAATTGAAGACAATTAATCACAAATTAAATT
1 ACTATTAAATTTGAAAGTAAGCAATTGAAGACAATTAATCACAAATTAAATT
8042933 ACTATTAAATTTGAAAGTAAGCAATTGAAGACAATTAATCACAAATTAAATT
1 ACTATTAAATTTGAAAGTAAGCAATTGAAGACAATTAATCACAAATTAAATT
8042985 ACT
1 ACT
8042988 TTGATTTTTT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 55 1.00
ACGTcount: A:0.50, C:0.10, G:0.09, T:0.31
Consensus pattern (52 bp):
ACTATTAAATTTGAAAGTAAGCAATTGAAGACAATTAATCACAAATTAAATT
Found at i:8043823 original size:65 final size:65
Alignment explanation
Indices: 8043747--8043877 Score: 253
Period size: 65 Copynumber: 2.0 Consensus size: 65
8043737 CAAGAAATAC
*
8043747 ACCCATACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAAGTTGTAAAGTTTTATTTTT
1 ACCCATACTTAGTTGAAAATCAAGCCAAATTGTCAAAGTGGCCCAAGTTGTAAAGTTTTATTTTT
8043812 ACCCATACTTAGTTGAAAATCAAGCCAAATTGTCAAAGTGGCCCAAGTTGTAAAGTTTTATTTTT
1 ACCCATACTTAGTTGAAAATCAAGCCAAATTGTCAAAGTGGCCCAAGTTGTAAAGTTTTATTTTT
8043877 A
1 A
8043878 TTTATTTATT
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.34
Consensus pattern (65 bp):
ACCCATACTTAGTTGAAAATCAAGCCAAATTGTCAAAGTGGCCCAAGTTGTAAAGTTTTATTTTT
Found at i:8048650 original size:25 final size:26
Alignment explanation
Indices: 8048621--8048672 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
8048611 AGTCAGTTTT
8048621 ACTTACTTTTGCTCAAAAAA-AAAAA
1 ACTTACTTTTGCTCAAAAAAGAAAAA
8048646 ACTTACTTTTGCTCAAAAAAGAAAAA
1 ACTTACTTTTGCTCAAAAAAGAAAAA
8048672 A
1 A
8048673 AAAACCCAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 20 0.77
26 6 0.23
ACGTcount: A:0.52, C:0.15, G:0.06, T:0.27
Consensus pattern (26 bp):
ACTTACTTTTGCTCAAAAAAGAAAAA
Found at i:8049309 original size:10 final size:9
Alignment explanation
Indices: 8049279--8049346 Score: 50
Period size: 9 Copynumber: 7.3 Consensus size: 9
8049269 CAAAATTATT
8049279 ATTTTAGAAA
1 ATTTTA-AAA
*
8049289 ATTTTTTAAA
1 A-TTTTAAAA
8049299 ATTATTAAAA
1 ATT-TTAAAA
* *
8049309 A-ATTAGAA
1 ATTTTAAAA
8049317 ATTTTAAAA
1 ATTTTAAAA
8049326 TATTTT-AAA
1 -ATTTTAAAA
*
8049335 ATTTTGAAA
1 ATTTTAAAA
8049344 ATT
1 ATT
8049347 ATTTTATTTT
Statistics
Matches: 47, Mismatches: 6, Indels: 11
0.73 0.09 0.17
Matches are distributed among these distances:
8 11 0.23
9 16 0.34
10 16 0.34
11 4 0.09
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (9 bp):
ATTTTAAAA
Found at i:8055788 original size:24 final size:23
Alignment explanation
Indices: 8055729--8055789 Score: 59
Period size: 24 Copynumber: 2.6 Consensus size: 23
8055719 TTGTTATTAT
* * *
8055729 GTAAATTTAAAAACATCAATAAT
1 GTAAATATAAAAACATCAAGAAC
* *
8055752 GTTAATATCAAAAACATTACAGAAC
1 GTAAATAT-AAAAACATCA-AGAAC
8055777 GTAAATATAAAAA
1 GTAAATATAAAAA
8055790 TTTTGTTTCT
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
23 6 0.20
24 14 0.47
25 10 0.33
ACGTcount: A:0.57, C:0.10, G:0.07, T:0.26
Consensus pattern (23 bp):
GTAAATATAAAAACATCAAGAAC
Found at i:8060419 original size:25 final size:26
Alignment explanation
Indices: 8060391--8060459 Score: 79
Period size: 25 Copynumber: 2.7 Consensus size: 26
8060381 GAGCGTTTGG
8060391 TTATTTAGCTCTTATGAGCATCCC-A
1 TTATTTAGCTCTTATGAGCATCCCGA
* * *
8060416 TTATATAGCTCTTACGAGCTTCCCGA
1 TTATTTAGCTCTTATGAGCATCCCGA
* *
8060442 -TATTTGGCTCTCATGAGC
1 TTATTTAGCTCTTATGAGC
8060460 TTTTCTATTA
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
25 35 0.97
26 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.16, T:0.38
Consensus pattern (26 bp):
TTATTTAGCTCTTATGAGCATCCCGA
Found at i:8060608 original size:25 final size:25
Alignment explanation
Indices: 8060553--8060613 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 25
8060543 TACAGCTCAC
*
8060553 ATGAGCTTCCCGTTACATGGCTCGG
1 ATGAGCTTCCCATTACATGGCTCGG
* *
8060578 AAGAGCTTCCCAATTACAT-GCTCGT
1 ATGAGCTTCCC-ATTACATGGCTCGG
*
8060603 ATGAGCATCCC
1 ATGAGCTTCCC
8060614 TAAATATGAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
25 24 0.80
26 6 0.20
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (25 bp):
ATGAGCTTCCCATTACATGGCTCGG
Found at i:8066072 original size:13 final size:13
Alignment explanation
Indices: 8066054--8066079 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8066044 TGAAAAATGC
8066054 GCAACTGAGCAAT
1 GCAACTGAGCAAT
8066067 GCAACTGAGCAAT
1 GCAACTGAGCAAT
8066080 TTGCATACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.15
Consensus pattern (13 bp):
GCAACTGAGCAAT
Found at i:8066584 original size:83 final size:82
Alignment explanation
Indices: 8066446--8066598 Score: 236
Period size: 83 Copynumber: 1.9 Consensus size: 82
8066436 AGATCTAGAG
*
8066446 TGTTCCCAAATGCAAGAAACATACAAGGATGAGAAGTGTTAATCTCAATGACTCAAAGTCTTCCA
1 TGTTCCCAAATGCAAGAAACATACAAGGATGAGAAGGGTTAATCTCAATGACTCAAAGTCTTCCA
8066511 CTATTGAACGAAGTAGT
66 CTATTGAACGAAGTAGT
* * * *
8066528 TGTTCCCAATTGCAAGATATA-ATCCAAGGATGAGAAGGGTTAATCTCAATGGCTCAAGGTCTTC
1 TGTTCCCAAATGCAAGA-A-ACATACAAGGATGAGAAGGGTTAATCTCAATGACTCAAAGTCTTC
8066592 CACTATT
64 CACTATT
8066599 AAATGAATTT
Statistics
Matches: 64, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
82 16 0.25
83 47 0.73
84 1 0.02
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (82 bp):
TGTTCCCAAATGCAAGAAACATACAAGGATGAGAAGGGTTAATCTCAATGACTCAAAGTCTTCCA
CTATTGAACGAAGTAGT
Found at i:8067206 original size:12 final size:12
Alignment explanation
Indices: 8067189--8067213 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8067179 TTGTGTGTTC
8067189 TTTATTTTATTT
1 TTTATTTTATTT
8067201 TTTATTTTATTT
1 TTTATTTTATTT
8067213 T
1 T
8067214 ATTTTTCACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (12 bp):
TTTATTTTATTT
Found at i:8071640 original size:13 final size:13
Alignment explanation
Indices: 8071622--8071647 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8071612 TTGTGTGTTC
8071622 TTTATTTTATTTT
1 TTTATTTTATTTT
8071635 TTTATTTTATTTT
1 TTTATTTTATTTT
8071648 ATTTTTCACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTATTTTATTTT
Done.