Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 32 of 255
Found at i:8316227 original size:27 final size:27
Alignment explanation
Indices: 8316191--8316245 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
8316181 AAGTTAGACT
8316191 AAATAAACTAAGGTTAGTGAAAAGTTA
1 AAATAAACTAAGGTTAGTGAAAAGTTA
*
8316218 AAATGAACTAAGGTTAGTGAAAAGTTA
1 AAATAAACTAAGGTTAGTGAAAAGTTA
8316245 A
1 A
8316246 GCCTTAATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.51, C:0.04, G:0.20, T:0.25
Consensus pattern (27 bp):
AAATAAACTAAGGTTAGTGAAAAGTTA
Found at i:8321480 original size:46 final size:45
Alignment explanation
Indices: 8321344--8321496 Score: 155
Period size: 46 Copynumber: 3.4 Consensus size: 45
8321334 TGGACTGCAA
* * * *
8321344 TTTAAGCTCGTGCTTAGGAGTATCTTCATTTATTATGTATGAACAA
1 TTTAAGCTCGTGCTTAGGAGGATCATCATTTATT-TGTATGAATAG
** * **
8321390 TTTAAATTCATGCTTAGGAGG-TCATTGTTTATTTCGTATGAATAG
1 TTTAAGCTCGTGCTTAGGAGGATCATCATTTATTT-GTATGAATAG
* *
8321435 TTTAAGCTCGTGCTTCGGAGGATCATCATTTATTCTTTATGAATAG
1 TTTAAGCTCGTGCTTAGGAGGATCATCATTTATT-TGTATGAATAG
* *
8321481 TTTAAGATTGTGCTTA
1 TTTAAGCTCGTGCTTA
8321497 AAGCATGACC
Statistics
Matches: 85, Mismatches: 19, Indels: 6
0.77 0.17 0.05
Matches are distributed among these distances:
44 1 0.01
45 34 0.40
46 49 0.58
47 1 0.01
ACGTcount: A:0.26, C:0.12, G:0.19, T:0.43
Consensus pattern (45 bp):
TTTAAGCTCGTGCTTAGGAGGATCATCATTTATTTGTATGAATAG
Found at i:8323138 original size:15 final size:15
Alignment explanation
Indices: 8323114--8323143 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8323104 TGACGAGATC
*
8323114 GAAGAGAAAGAAAAA
1 GAAGAAAAAGAAAAA
8323129 GAAGAAAAAGAAAAA
1 GAAGAAAAAGAAAAA
8323144 AAATTAACTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (15 bp):
GAAGAAAAAGAAAAA
Found at i:8325437 original size:17 final size:17
Alignment explanation
Indices: 8325415--8325472 Score: 66
Period size: 17 Copynumber: 3.5 Consensus size: 17
8325405 ATCAGACACT
*
8325415 TATCCATC-TATATGTCA
1 TATCCATCATTTAT-TCA
*
8325432 TATCCATCGTTTATTCA
1 TATCCATCATTTATTCA
*
8325449 TACCCATCATTTATTCA
1 TATCCATCATTTATTCA
8325466 T-TCCATC
1 TATCCATC
8325473 TGCCACTTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
16 5 0.14
17 27 0.75
18 4 0.11
ACGTcount: A:0.26, C:0.28, G:0.03, T:0.43
Consensus pattern (17 bp):
TATCCATCATTTATTCA
Found at i:8325547 original size:20 final size:20
Alignment explanation
Indices: 8325481--8325545 Score: 62
Period size: 20 Copynumber: 3.1 Consensus size: 20
8325471 TCTGCCACTT
8325481 TTTATTCTATAATTTATTTATT-
1 TTTATTCT-TAA--TATTTATTA
*
8325503 TATTATTTTTAATATTTATTA
1 T-TTATTCTTAATATTTATTA
*
8325524 TTTATTCTTAA-ATTTCTTA
1 TTTATTCTTAATATTTATTA
8325543 TTT
1 TTT
8325546 TAGTTTTTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
19 10 0.26
20 17 0.45
21 1 0.03
22 4 0.11
23 6 0.16
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.68
Consensus pattern (20 bp):
TTTATTCTTAATATTTATTA
Found at i:8331464 original size:15 final size:16
Alignment explanation
Indices: 8331444--8331481 Score: 60
Period size: 17 Copynumber: 2.4 Consensus size: 16
8331434 ACCTGGATCA
8331444 CATAAT-CACAATACT
1 CATAATACACAATACT
8331459 CATAATGACACAATACT
1 CATAAT-ACACAATACT
8331476 CATAAT
1 CATAAT
8331482 GACCCTAGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 6 0.29
17 15 0.71
ACGTcount: A:0.47, C:0.24, G:0.03, T:0.26
Consensus pattern (16 bp):
CATAATACACAATACT
Found at i:8331472 original size:17 final size:17
Alignment explanation
Indices: 8331450--8331484 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
8331440 ATCACATAAT
8331450 CACAATACTCATAATGA
1 CACAATACTCATAATGA
8331467 CACAATACTCATAATGA
1 CACAATACTCATAATGA
8331484 C
1 C
8331485 CCTAGTGACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.46, C:0.26, G:0.06, T:0.23
Consensus pattern (17 bp):
CACAATACTCATAATGA
Found at i:8332570 original size:13 final size:13
Alignment explanation
Indices: 8332552--8332585 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
8332542 CCAAACGTCA
*
8332552 AAATTTTTGAACG
1 AAATTTTCGAACG
*
8332565 AAATTTTCGAATG
1 AAATTTTCGAACG
8332578 AAATTTTC
1 AAATTTTC
8332586 AAAAAGGCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.38, C:0.09, G:0.12, T:0.41
Consensus pattern (13 bp):
AAATTTTCGAACG
Found at i:8334906 original size:15 final size:16
Alignment explanation
Indices: 8334886--8334915 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
8334876 GCAATTGTAA
8334886 AAAAAAATTA-AAATT
1 AAAAAAATTAGAAATT
8334901 AAAAAAATTAGAAAT
1 AAAAAAATTAGAAAT
8334916 CTAATGTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.23
Consensus pattern (16 bp):
AAAAAAATTAGAAATT
Found at i:8340171 original size:13 final size:13
Alignment explanation
Indices: 8340153--8340181 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
8340143 CTTTTGATTA
8340153 AGTTGGTATCATG
1 AGTTGGTATCATG
8340166 AGTTGGTATCATG
1 AGTTGGTATCATG
8340179 AGT
1 AGT
8340182 CAACCGGGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.24, C:0.07, G:0.31, T:0.38
Consensus pattern (13 bp):
AGTTGGTATCATG
Found at i:8340701 original size:12 final size:11
Alignment explanation
Indices: 8340659--8340702 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 11
8340649 TCAATATAAA
8340659 TTTTAAAT-TT
1 TTTTAAATATT
8340669 TTATTAAATATT
1 TT-TTAAATATT
8340681 TTTTAAAATAATT
1 TTTT-AAAT-ATT
8340694 TTTTAAATA
1 TTTTAAATA
8340703 GAATCAAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
10 2 0.07
11 9 0.30
12 12 0.40
13 7 0.23
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (11 bp):
TTTTAAATATT
Found at i:8341233 original size:24 final size:24
Alignment explanation
Indices: 8341206--8341252 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
8341196 AAACTACATT
8341206 ATAAA-TATATAATTTTTTTAAAAG
1 ATAAATTATATAA-TTTTTTAAAAG
* *
8341230 ATAAATTTTTTAATTTTTTAAAA
1 ATAAATTATATAATTTTTTAAAA
8341253 TTTTTAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 15 0.75
25 5 0.25
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (24 bp):
ATAAATTATATAATTTTTTAAAAG
Found at i:8341367 original size:19 final size:19
Alignment explanation
Indices: 8341308--8341369 Score: 61
Period size: 19 Copynumber: 3.3 Consensus size: 19
8341298 AATATTTGTA
* **
8341308 AAAAATTATAAAAAATATT
1 AAAAATTAAAAAAAACGTT
* * *
8341327 AGAAATTAAAAAATACGAT
1 AAAAATTAAAAAAAACGTT
*
8341346 AAAAATTAAAAAAAAGGTT
1 AAAAATTAAAAAAAACGTT
8341365 AAAAA
1 AAAAA
8341370 CTAGTAAAGA
Statistics
Matches: 33, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.69, C:0.02, G:0.06, T:0.23
Consensus pattern (19 bp):
AAAAATTAAAAAAAACGTT
Found at i:8345248 original size:18 final size:18
Alignment explanation
Indices: 8345222--8345256 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
8345212 TTTATCTTTA
8345222 ATTCAGCAATTTTAATCT
1 ATTCAGCAATTTTAATCT
*
8345240 ATTCTGCAATTTTAATC
1 ATTCAGCAATTTTAATC
8345257 ATATATATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.17, G:0.06, T:0.46
Consensus pattern (18 bp):
ATTCAGCAATTTTAATCT
Found at i:8349627 original size:21 final size:20
Alignment explanation
Indices: 8349585--8349628 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
8349575 AGAACGTGCC
**
8349585 AAACAAAAAAAATAACCCCA
1 AAACAAAAAAAATAAAACCA
*
8349605 AAACAAAAATAAATAAAATCA
1 AAACAAAAA-AAATAAAACCA
8349626 AAA
1 AAA
8349629 TAGAAATTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 9 0.45
21 11 0.55
ACGTcount: A:0.75, C:0.16, G:0.00, T:0.09
Consensus pattern (20 bp):
AAACAAAAAAAATAAAACCA
Found at i:8353360 original size:126 final size:126
Alignment explanation
Indices: 8353131--8353422 Score: 361
Period size: 126 Copynumber: 2.3 Consensus size: 126
8353121 CCTTAAAACG
** * * * *
8353131 AAGGCAATGTTTGATGTTTGGAAATTCAGGAAATCGTGCCTTATCATGTTGGGTTTTGATTTCCC
1 AAGGCAATGTTCAATGTTTGGAAATTC-GGGAATCGTGCCCTATCATGCTGGGTTTCGATTTCCC
* * * *
8353196 GTTTGTCCAAAATAATCAAATATTCCTTTAGAATTTCACTCGTGTTTTTCAAATTCT-GAGAC
65 GTTTGTCCAAAATAATCAAATATTCCTTCAGAATTTCACTCGTGTTTTACAAATTATAAAG-C
* * **
8353258 AATGCAATGTTCAATGTTTGGAAATTCGGGAATCGTGCCCTATCGTGCTGGGTTTCGATTTCTGG
1 AAGGCAATGTTCAATGTTTGGAAATTCGGGAATCGTGCCCTATCATGCTGGGTTTCGATTTCCCG
* **
8353323 TTTGTTCAAAATAATTGAATATTCCTTCAGAATTTCACTCGTGTTTTACAAATTATAAAGC
66 TTTGTCCAAAATAATCAAATATTCCTTCAGAATTTCACTCGTGTTTTACAAATTATAAAGC
* * * *
8353384 AAGGTAATATTCAATGTTTGGAAGTTTCAGGAATCGTGC
1 AAGGCAATGTTCAATGTTTGGAA-ATTCGGGAATCGTGC
8353423 TCTACTGTGT
Statistics
Matches: 141, Mismatches: 22, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
126 102 0.72
127 39 0.28
ACGTcount: A:0.27, C:0.15, G:0.20, T:0.38
Consensus pattern (126 bp):
AAGGCAATGTTCAATGTTTGGAAATTCGGGAATCGTGCCCTATCATGCTGGGTTTCGATTTCCCG
TTTGTCCAAAATAATCAAATATTCCTTCAGAATTTCACTCGTGTTTTACAAATTATAAAGC
Found at i:8353461 original size:126 final size:126
Alignment explanation
Indices: 8353144--8353465 Score: 328
Period size: 126 Copynumber: 2.5 Consensus size: 126
8353134 GCAATGTTTG
* * * * * * **
8353144 ATGTTTGGAAATTCAGGAAATCGTGCCTTATCATGTTGGGTTTTGATTTCCCGTTTGTCCAAAAT
1 ATGTTTGGAAATTCAGG-AATCGTGCCCTATCGTGCTAGGTTTCGATTTCTCGTTTGGACAAAAT
** * * * * * *
8353209 AATCAAATATTCCTTTAGAATTTCACTCGTGTTTTTCAAATTCTGAGACAATGCAATGTTCA
65 AATTGAATATTCCTTCAGAATTTCACTCGTGTTTTACAAATTATAAGACAAGGCAATATTCA
* * * **
8353271 ATGTTTGGAAATTCGGGAATCGTGCCCTATCGTGCTGGGTTTCGATTTCTGGTTTGTTCAAAATA
1 ATGTTTGGAAATTCAGGAATCGTGCCCTATCGTGCTAGGTTTCGATTTCTCGTTTGGACAAAATA
*
8353336 ATTGAATATTCCTTCAGAATTTCACTCGTGTTTTACAAATTATAA-AGCAAGGTAATATTCA
66 ATTGAATATTCCTTCAGAATTTCACTCGTGTTTTACAAATTATAAGA-CAAGGCAATATTCA
* * * * *
8353397 ATGTTTGGAAGTTTCAGGAATCGTGCTCTA-CTGTGTTAGGTTTC-AGTTTTTCG-TTGGACTAA
1 ATGTTTGGAA-ATTCAGGAATCGTGCCCTATC-GTGCTAGGTTTCGA-TTTCTCGTTTGGACAAA
8353459 ATAATTG
63 ATAATTG
8353466 GGCATCATTT
Statistics
Matches: 164, Mismatches: 27, Indels: 9
0.82 0.14 0.05
Matches are distributed among these distances:
125 1 0.01
126 116 0.71
127 47 0.29
ACGTcount: A:0.26, C:0.15, G:0.19, T:0.39
Consensus pattern (126 bp):
ATGTTTGGAAATTCAGGAATCGTGCCCTATCGTGCTAGGTTTCGATTTCTCGTTTGGACAAAATA
ATTGAATATTCCTTCAGAATTTCACTCGTGTTTTACAAATTATAAGACAAGGCAATATTCA
Found at i:8368247 original size:44 final size:44
Alignment explanation
Indices: 8368199--8368701 Score: 225
Period size: 44 Copynumber: 11.3 Consensus size: 44
8368189 AGTAAACCTT
* * * *
8368199 ATCTCTCTGAAGTTGCAGTCGAGCAGGTTGAAGTAACAAGTCGC
1 ATCTCTCTGAAGTTGCAGTAGAGCAGATTGAAGTAGCAAGTCTC
* * * * *
8368243 ATCTC-CTTGAAGTTGCAGT-GAAACAGACTGTAGTTAAC-AGATCTT
1 ATCTCTC-TGAAGTTGCAGTAG-AGCAGATTGAAG-TAGCAAG-TCTC
* * ** * *
8368288 ATCTCCCTGAAGTTGCAGTAGAGCAGATCGAAGCCGC-AGACCTT
1 ATCTCTCTGAAGTTGCAGTAGAGCAGATTGAAGTAGCAAG-TCTC
** * * *
8368332 ATCTCTCTGAAGTTGCAGTAGAGTGGGTTGAAATAGTAAGTCTC
1 ATCTCTCTGAAGTTGCAGTAGAGCAGATTGAAGTAGCAAGTCTC
* * * ** *
8368376 ATCTC-CTTGAAGTTGCAGTGGAGCAGATCGAAGTCGCAAACCTT
1 ATCTCTC-TGAAGTTGCAGTAGAGCAGATTGAAGTAGCAAGTCTC
** * *
8368420 ATCTCTCTGAAGTTGCAGTAGAGTGGGTTGAAATAGCAAGTCTC
1 ATCTCTCTGAAGTTGCAGTAGAGCAGATTGAAGTAGCAAGTCTC
* * * * * *
8368464 ATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGATTGC-AGATCTT
1 ATCTCTCTGAAGTTGCAGTAGAGCAGATTGAAG-TAGCAAG-TCTC
* * * ** * *
8368509 GTCTCCCTGAAGTTGCAGTGGAGCAGATCAAAGCCA-CAA-TCCTT
1 ATCTCTCTGAAGTTGCAGTAGAGCAGATTGAAG-TAGCAAGT-CTC
* * * ** * *
8368553 ATCTCTCTAAAATTACAGTAGAGCAGGATAAAATTACCCAAGTCTC
1 ATCTCTCTGAAGTTGCAGTAGAGCA-GATTGAAGTA-GCAAGTCTC
* * * ** * * * *
8368599 ATCTCCCTGAAGTTGCAGTGGAGTAGCCTGAAGTTAACAAATTTT
1 ATCTCTCTGAAGTTGCAGTAGAGCAGATTGAAG-TAGCAAGTCTC
* * * * *
8368644 ATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGCCA-CAA-TCCTT
1 ATCTCTCTGAAGTTGCAGTAGAGCAGATTGAAG-TAGCAAGT-CTC
8368688 ATCTCTCTGAAGTT
1 ATCTCTCTGAAGTT
8368702 ATGGTAGAGC
Statistics
Matches: 343, Mismatches: 97, Indels: 38
0.72 0.20 0.08
Matches are distributed among these distances:
43 5 0.01
44 196 0.57
45 113 0.33
46 28 0.08
47 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (44 bp):
ATCTCTCTGAAGTTGCAGTAGAGCAGATTGAAGTAGCAAGTCTC
Found at i:8368400 original size:88 final size:88
Alignment explanation
Indices: 8368288--8368527 Score: 365
Period size: 88 Copynumber: 2.7 Consensus size: 88
8368278 AACAGATCTT
* *
8368288 ATCTCCCTGAAGTTGCAGTAGAGCAGATCGAAGCCGCAGACCTTATCTCTCTGAAGTTGCAGTAG
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGTCGCAGACCTTATCTCTCTGAAGTTGCAGTAG
*
8368353 AGTGGGTTGAAATAGTAAGTCTC
66 AGTGGGTTGAAATAGCAAGTCTC
* *
8368376 ATCTCCTTGAAGTTGCAGTGGAGCAGATCGAAGTCGCAAACCTTATCTCTCTGAAGTTGCAGTAG
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGTCGCAGACCTTATCTCTCTGAAGTTGCAGTAG
8368441 AGTGGGTTGAAATAGCAAGTCTC
66 AGTGGGTTGAAATAGCAAGTCTC
* * * * *
8368464 ATCTCCCTGAAGTTGTAGTGGAGCAGA-CTGAAGATTGCAGATCTTGTCTCCCTGAAGTTGCAGT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATC-GAAG-TCGCAGACCTTATCTCTCTGAAGTTGCAGT
8368528 GGAGCAGATC
Statistics
Matches: 138, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
87 1 0.01
88 112 0.81
89 25 0.18
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (88 bp):
ATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGTCGCAGACCTTATCTCTCTGAAGTTGCAGTAG
AGTGGGTTGAAATAGCAAGTCTC
Found at i:8368556 original size:133 final size:135
Alignment explanation
Indices: 8368376--8368759 Score: 454
Period size: 135 Copynumber: 2.9 Consensus size: 135
8368366 AGTAAGTCTC
* * * * *
8368376 ATCTCCTTGAAGTTGCAGTGGAGCAGATCGAAGTCGCAAACCTTATCTCTCTGAAGTTGCAGTAG
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGCCACAATCCTTATCTCTCTGAAGTTACAGTAG
** * * * * *
8368441 AGTGGGTTGAAA-TA-GCAAGTCTCATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGATT-GCA
66 AGCAGGATAAAATTACCCAAGTCTCATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG-TTAACA
*
8368503 GATCTT
130 AATCTT
* * * *
8368509 GTCTCCCTGAAGTTGCAGTGGAGCAGATCAAAGCCACAATCCTTATCTCTCTAAAATTACAGTAG
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGCCACAATCCTTATCTCTCTGAAGTTACAGTAG
* *
8368574 AGCAGGATAAAATTACCCAAGTCTCATCTCCCTGAAGTTGCAGTGGAGTAGCCTGAAGTTAACAA
66 AGCAGGATAAAATTACCCAAGTCTCATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGTTAACAA
*
8368639 ATTTT
131 ATCTT
**
8368644 ATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGCCACAATCCTTATCTCTCTGAAGTTATGGTAG
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGCCACAATCCTTATCTCTCTGAAGTTACAGTAG
* * * * * *
8368709 AGCAAGATAAAAATACACGAA-CCGT-ATCTCCCTAAAGTTGCGGTGGAGCAG
66 AGCAGGATAAAATTAC-CCAAGTC-TCATCTCCCTGAAGTTGCAGTGGAGCAG
8368760 TTGCAGTAGA
Statistics
Matches: 213, Mismatches: 33, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
133 64 0.30
134 4 0.02
135 141 0.66
136 4 0.02
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (135 bp):
ATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGCCACAATCCTTATCTCTCTGAAGTTACAGTAG
AGCAGGATAAAATTACCCAAGTCTCATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGTTAACAA
ATCTT
Found at i:8368575 original size:221 final size:223
Alignment explanation
Indices: 8368192--8368621 Score: 580
Period size: 221 Copynumber: 1.9 Consensus size: 223
8368182 TCATCATAGT
* * *
8368192 AAACCTTATCTCTCTGAAGTTGCAGTCGAGCAGGTTGAAGTAACAAGTCGCATCTCCTTGAAGTT
1 AAACCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTGAAATAACAAGTCGCATCTCCCTGAAGTT
* *
8368257 GCAGTGAAACAGACTGTAGTTAACAGATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATCGAAGC
66 GCAGTGAAACAGACTGAAGTTAACAGATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATCAAAGC
* * * * ** * * ** *
8368322 CGCAGACCTTATCTCTCTGAAGTTGCAGTAGAGTGGGTTGAAA-TA-GTAAGTCTCATCTCCTTG
131 CACAGACCTTATCTCTCTAAAATTACAGTAGAGCAGGATAAAATTACCCAAGTCTCATCTCCCTG
8368385 AAGTTGCAGTGGAGCAGATCGAAGTCGC
196 AAGTTGCAGTGGAGCAGATCGAAGTCGC
** * *
8368413 AAACCTTATCTCTCTGAAGTTGCAGTAGAGTGGGTTGAAATAGCAAGTCTCATCTCCCTGAAGTT
1 AAACCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTGAAATAACAAGTCGCATCTCCCTGAAGTT
* * * * * *
8368478 GTAGTGGAGCAGACTGAAGATT-GCAGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCAAAG
66 GCAGTGAAACAGACTGAAG-TTAACAGATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATCAAAG
8368542 CCACA-ATCCTTATCTCTCTAAAATTACAGTAGAGCAGGATAAAATTACCCAAGTCTCATCTCCC
130 CCACAGA-CCTTATCTCTCTAAAATTACAGTAGAGCAGGATAAAATTACCCAAGTCTCATCTCCC
8368606 TGAAGTTGCAGTGGAG
194 TGAAGTTGCAGTGGAG
8368622 TAGCCTGAAG
Statistics
Matches: 179, Mismatches: 26, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
220 1 0.01
221 145 0.81
222 4 0.02
223 29 0.16
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.27
Consensus pattern (223 bp):
AAACCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTGAAATAACAAGTCGCATCTCCCTGAAGTT
GCAGTGAAACAGACTGAAGTTAACAGATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATCAAAGC
CACAGACCTTATCTCTCTAAAATTACAGTAGAGCAGGATAAAATTACCCAAGTCTCATCTCCCTG
AAGTTGCAGTGGAGCAGATCGAAGTCGC
Found at i:8369431 original size:25 final size:25
Alignment explanation
Indices: 8369389--8369438 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
8369379 ATTTGATTTT
*
8369389 TGTAAGAGGGTACGCACTACGCATA
1 TGTAAGAGGGTACACACTACGCATA
*
8369414 TGTAAGAGGTTACACACTACGCATA
1 TGTAAGAGGGTACACACTACGCATA
8369439 CTTAATATCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.22
Consensus pattern (25 bp):
TGTAAGAGGGTACACACTACGCATA
Found at i:8371789 original size:41 final size:41
Alignment explanation
Indices: 8371674--8371781 Score: 139
Period size: 41 Copynumber: 2.6 Consensus size: 41
8371664 GCAATAGAAC
* **
8371674 GCCGC-AAAAAATAGAGCAATAGCGGCGTTTTTGATCCAAAT
1 GCCGCTAAAAACT-GAGCAATAGCGGCGTTTTTGGCCCAAAT
* *
8371715 GCCGCTAAAAACTGAGCAATAGCAGTGTTTTTGGCCCAAAT
1 GCCGCTAAAAACTGAGCAATAGCGGCGTTTTTGGCCCAAAT
8371756 GCCGCTAAAAACTGTA-CAATAGCGGC
1 GCCGCTAAAAACTG-AGCAATAGCGGC
8371782 ACTTTTGGAA
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
41 51 0.88
42 7 0.12
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.21
Consensus pattern (41 bp):
GCCGCTAAAAACTGAGCAATAGCGGCGTTTTTGGCCCAAAT
Found at i:8371820 original size:41 final size:41
Alignment explanation
Indices: 8371775--8372058 Score: 433
Period size: 41 Copynumber: 6.9 Consensus size: 41
8371765 AACTGTACAA
* * *
8371775 TAGCGGCACTTTTGGAAAAACGCCGCTATAGGTCGAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGCCGATGTTT
* ** *
8371816 TAGCGGCGCTTCTGGAAAAACGCCGCTATAGATCGAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGCCGATGTTT
* *
8371857 TAGCGGCGCTTTTGGAAAAACACCTCTATAGGCCGATGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGCCGATGTTT
8371898 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGCCGATGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGCCGATGTTT
* * *
8371939 TAGCGGCGCTTATGGAAAAAAGCCGTTATAGGCCGATGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGCCGATGTTT
*
8371980 TAGCGGCGCTTTTGGGAAAACGCCGCTATAGGCCGATGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGCCGATGTTT
* *
8372021 TAGCGGCGCTTATGAAAAAACGCCGCTATAGGCCGATG
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGCCGATG
8372059 CCGCTATAGG
Statistics
Matches: 222, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 222 1.00
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (41 bp):
TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGCCGATGTTT
Found at i:8372063 original size:16 final size:16
Alignment explanation
Indices: 8372042--8372074 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
8372032 ATGAAAAAAC
8372042 GCCGCTATAGGCCGAT
1 GCCGCTATAGGCCGAT
8372058 GCCGCTATAGGCCGAT
1 GCCGCTATAGGCCGAT
8372074 G
1 G
8372075 TTATCGGCGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.18, C:0.30, G:0.33, T:0.18
Consensus pattern (16 bp):
GCCGCTATAGGCCGAT
Found at i:8372113 original size:39 final size:40
Alignment explanation
Indices: 8372058--8372134 Score: 111
Period size: 41 Copynumber: 1.9 Consensus size: 40
8372048 ATAGGCCGAT
*
8372058 GCCGCTATAGGCCGATG-TTATCGGCGCTTTTGGAAAAAC
1 GCCGCTATAGGCCGATGTTTAGCGGCGCTTTTGGAAAAAC
* *
8372097 GCCGCTATATGTCGATGTTTTAGCGGCGCTTTTGGAAA
1 GCCGCTATAGGCCGATG-TTTAGCGGCGCTTTTGGAAA
8372135 GATGCCACAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
39 15 0.45
41 18 0.55
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.30
Consensus pattern (40 bp):
GCCGCTATAGGCCGATGTTTAGCGGCGCTTTTGGAAAAAC
Found at i:8372492 original size:18 final size:18
Alignment explanation
Indices: 8372448--8372496 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
8372438 TTGTCCCTTG
8372448 TTAT-ATATATATTAAAC
1 TTATAATATATATTAAAC
* *
8372465 TTCTATTATATATTAAGA-
1 TTATAATATATATTAA-AC
8372483 TTATAATATATATT
1 TTATAATATATATT
8372497 TAGGGTGTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
17 3 0.12
18 22 0.85
19 1 0.04
ACGTcount: A:0.43, C:0.04, G:0.02, T:0.51
Consensus pattern (18 bp):
TTATAATATATATTAAAC
Found at i:8372936 original size:15 final size:15
Alignment explanation
Indices: 8372916--8372947 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
8372906 TTTAATGTAG
*
8372916 AAGATAAATGTATAT
1 AAGATAAATATATAT
8372931 AAGATAAATATATAT
1 AAGATAAATATATAT
8372946 AA
1 AA
8372948 ATTATTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.31
Consensus pattern (15 bp):
AAGATAAATATATAT
Found at i:8377863 original size:24 final size:24
Alignment explanation
Indices: 8377800--8377866 Score: 93
Period size: 24 Copynumber: 2.8 Consensus size: 24
8377790 ATTATTATTG
*
8377800 AAATATTCTCGTCCG-TTTATCAC
1 AAATATTATCGTCCGTTTTATCAC
*
8377823 AAATATTATTC-TTCGTTTTATCAC
1 AAATATTA-TCGTCCGTTTTATCAC
8377847 AAATATTATCGTCCGTTTTA
1 AAATATTATCGTCCGTTTTA
8377867 CAATTTAAGT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
23 12 0.32
24 26 0.68
ACGTcount: A:0.28, C:0.19, G:0.07, T:0.45
Consensus pattern (24 bp):
AAATATTATCGTCCGTTTTATCAC
Found at i:8378091 original size:15 final size:15
Alignment explanation
Indices: 8378043--8378098 Score: 64
Period size: 15 Copynumber: 3.8 Consensus size: 15
8378033 AACGACATGT
8378043 ATATTATTTAATTAAA
1 ATATTATTTAATT-AA
8378059 ATAATT-TTT-A-TAA
1 AT-ATTATTTAATTAA
8378072 ATATTATTTAATTAA
1 ATATTATTTAATTAA
*
8378087 CTATTATTTAAT
1 ATATTATTTAAT
8378099 CCCGCTACTT
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
12 3 0.09
13 7 0.20
14 2 0.06
15 15 0.43
16 5 0.14
17 3 0.09
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.54
Consensus pattern (15 bp):
ATATTATTTAATTAA
Found at i:8378215 original size:9 final size:9
Alignment explanation
Indices: 8378203--8378420 Score: 133
Period size: 9 Copynumber: 24.6 Consensus size: 9
8378193 TATTTGATAT
*
8378203 CATAATTTA
1 CATAACTTA
8378212 CATAACTTA
1 CATAACTTA
* *
8378221 TATAACATA
1 CATAACTTA
*
8378230 TATAACTTA
1 CATAACTTA
8378239 CATAACTTA
1 CATAACTTA
* *
8378248 TATAACATA
1 CATAACTTA
8378257 CATAACTTA
1 CATAACTTA
*
8378266 TATAACTTA
1 CATAACTTA
* *
8378275 GATAA-ATA
1 CATAACTTA
*
8378283 TATAACTTA
1 CATAACTTA
8378292 CATAACTTA
1 CATAACTTA
8378301 CATAA--TA
1 CATAACTTA
* *
8378308 CTTAA-ATA
1 CATAACTTA
* **
8378316 TATATTTATA
1 CATAACT-TA
*
8378326 TCATAATTTA
1 -CATAACTTA
8378336 CATAACTTA
1 CATAACTTA
8378345 CATAACTTA
1 CATAACTTA
*
8378354 TATAACTTA
1 CATAACTTA
* *
8378363 GATAA-ATA
1 CATAACTTA
* *
8378371 TATAATTTA
1 CATAACTTA
*
8378380 CATAA-ATA
1 CATAACTTA
* * *
8378388 TATATCATA
1 CATAACTTA
*
8378397 TCATAAATTA
1 -CATAACTTA
8378407 CATAACTTA
1 CATAACTTA
8378416 CATAA
1 CATAA
8378421 TACTTAAATA
Statistics
Matches: 164, Mismatches: 37, Indels: 16
0.76 0.17 0.07
Matches are distributed among these distances:
7 6 0.04
8 21 0.13
9 123 0.75
10 9 0.05
11 5 0.03
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (9 bp):
CATAACTTA
Found at i:8378225 original size:18 final size:18
Alignment explanation
Indices: 8378203--8378420 Score: 169
Period size: 18 Copynumber: 12.3 Consensus size: 18
8378193 TATTTGATAT
* *
8378203 CATAATTTACATAACTTA
1 CATAACTTATATAACTTA
* *
8378221 TATAACATATATAACTTA
1 CATAACTTATATAACTTA
*
8378239 CATAACTTATATAACATA
1 CATAACTTATATAACTTA
8378257 CATAACTTATATAACTTA
1 CATAACTTATATAACTTA
* *
8378275 GATAA-ATATATAACTTA
1 CATAACTTATATAACTTA
*
8378292 CATAACTTACATAA--TA
1 CATAACTTATATAACTTA
* * **
8378308 CTTAA-ATATATATTTATA
1 CATAACTTATATAACT-TA
* *
8378326 TCATAATTTACATAACTTA
1 -CATAACTTATATAACTTA
8378345 CATAACTTATATAACTTA
1 CATAACTTATATAACTTA
* * *
8378363 GATAA-ATATATAATTTA
1 CATAACTTATATAACTTA
* * *
8378380 CATAA-ATATATATCATA
1 CATAACTTATATAACTTA
* *
8378397 TCATAAATTACATAACTTA
1 -CATAACTTATATAACTTA
8378416 CATAA
1 CATAA
8378421 TACTTAAATA
Statistics
Matches: 157, Mismatches: 35, Indels: 16
0.75 0.17 0.08
Matches are distributed among these distances:
15 5 0.03
16 6 0.04
17 38 0.24
18 88 0.56
19 14 0.09
20 6 0.04
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (18 bp):
CATAACTTATATAACTTA
Found at i:8378297 original size:53 final size:52
Alignment explanation
Indices: 8378213--8378420 Score: 197
Period size: 53 Copynumber: 3.9 Consensus size: 52
8378203 CATAATTTAC
* *
8378213 ATAACTTATATAACATATATAACTTACATAACTTATATAACATACATAACTTAT
1 ATAACTTATATAA-ATATATAACTTACATAACTTACATAACATACATAA-ATAT
* *
8378267 ATAACTTAGATAAATATATAACTTACATAACTTACAT-A-ATACTTAAATAT
1 ATAACTTATATAAATATATAACTTACATAACTTACATAACATACATAAATAT
* * * * *
8378317 AT-ATTTATATCATAATTTACATAACTTACATAACTTATATAACTTAGATAAATAT
1 ATAACTTATAT-A-AA--TATATAACTTACATAACTTACATAACATACATAAATAT
* * * * * *
8378372 ATAATTTACATAAATATATATCATATCATAAATTACATAACTTACATAA
1 ATAACTTATATAAATATATAACTTA-CATAACTTACATAACATACATAA
8378421 TACTTAAATA
Statistics
Matches: 128, Mismatches: 18, Indels: 17
0.79 0.11 0.10
Matches are distributed among these distances:
49 6 0.05
50 6 0.05
51 9 0.07
52 9 0.07
53 64 0.50
54 15 0.12
55 12 0.09
56 7 0.05
ACGTcount: A:0.49, C:0.12, G:0.01, T:0.38
Consensus pattern (52 bp):
ATAACTTATATAAATATATAACTTACATAACTTACATAACATACATAAATAT
Found at i:8378408 original size:115 final size:114
Alignment explanation
Indices: 8378212--8378444 Score: 299
Period size: 115 Copynumber: 2.0 Consensus size: 114
8378202 TCATAATTTA
* * * * *
8378212 CATAACTTATATAACATATATAACTTACATAACTTATATAACATACATAACTTATATAACTTAGA
1 CATAACTTACATAACATACATAACTTACATAACTTAGATAACATACATAACTTACATAAATTAGA
* *
8378277 TAAATATATAACTTACATAACTTACATAATACTTAAATATATATTTATAT
66 TAAATATATAAATTACATAACTTACATAATACTTAAATATATA-TCATAT
* * * * * *
8378327 CATAATTTACATAACTTACATAACTTATATAACTTAGATAA-ATATATAATTTACATAAA-TATA
1 CATAACTTACATAACATACATAACTTACATAACTTAGATAACATACATAACTTACATAAATTAGA
*
8378390 TATCATATCATAAATTACATAACTTACATAATACTTAAATATATATCATAT
66 TA-AATAT-ATAAATTACATAACTTACATAATACTTAAATATATATCATAT
8378441 CATA
1 CATA
8378445 CATAACTAGT
Statistics
Matches: 102, Mismatches: 14, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
113 5 0.05
114 27 0.26
115 70 0.69
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (114 bp):
CATAACTTACATAACATACATAACTTACATAACTTAGATAACATACATAACTTACATAAATTAGA
TAAATATATAAATTACATAACTTACATAATACTTAAATATATATCATAT
Found at i:8383648 original size:13 final size:14
Alignment explanation
Indices: 8383632--8383660 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
8383622 TTCTAAATAT
8383632 TTATAA-TGTTTAA
1 TTATAATTGTTTAA
8383645 TTATAATTGTTTAA
1 TTATAATTGTTTAA
8383659 TT
1 TT
8383661 CAATTCATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (14 bp):
TTATAATTGTTTAA
Found at i:8384096 original size:21 final size:21
Alignment explanation
Indices: 8384071--8384132 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
8384061 TTAGAGCGGA
*
8384071 GGCAGCAGAGAGGGAGGCAGC
1 GGCAGTAGAGAGGGAGGCAGC
8384092 GGCAGTAGAGAGGGAGGCAGC
1 GGCAGTAGAGAGGGAGGCAGC
*
8384113 AGCAGTAGCA-AGGGAGGCAG
1 GGCAGTAG-AGAGGGAGGCAG
8384133 AGCATAGGAA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
21 37 0.97
22 1 0.03
ACGTcount: A:0.31, C:0.16, G:0.50, T:0.03
Consensus pattern (21 bp):
GGCAGTAGAGAGGGAGGCAGC
Found at i:8384606 original size:44 final size:43
Alignment explanation
Indices: 8384506--8384676 Score: 270
Period size: 43 Copynumber: 4.0 Consensus size: 43
8384496 TTTGTGGGAA
* * *
8384506 AAACGCCGCTAAAGGCCATAACTTTTAGGGGCACTTTTTTTCC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCC
**
8384549 AAACGCCTTTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTTCC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGC-TTTTTTTCC
*
8384593 AAACGCCGCTAAAGGCCATGACTTTTAGCGGTGCTTTTTTTCC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCC
*
8384636 AAACGCCGTTAAAGGCCATGACTTTTAGCGGCGCTTTTTTT
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTT
8384677 TAATAAACGC
Statistics
Matches: 117, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
43 77 0.66
44 40 0.34
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.33
Consensus pattern (43 bp):
AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCC
Found at i:8384652 original size:87 final size:87
Alignment explanation
Indices: 8384506--8384677 Score: 299
Period size: 87 Copynumber: 2.0 Consensus size: 87
8384496 TTTGTGGGAA
* *
8384506 AAACGCCGCTAAAGGCCATAACTTTTAGGGGCACTTTTTTTCCAAACGCCTTTAAAGGCCATGAC
1 AAACGCCGCTAAAGGCCATAACTTTTAGCGGCACTTTTTTTCCAAACGCCGTTAAAGGCCATGAC
8384571 TTTTAGCGGCGCTTTTTTTTCC
66 TTTTAGCGGCGCTTTTTTTTCC
* **
8384593 AAACGCCGCTAAAGGCCATGACTTTTAGCGGTGCTTTTTTTCCAAACGCCGTTAAAGGCCATGAC
1 AAACGCCGCTAAAGGCCATAACTTTTAGCGGCACTTTTTTTCCAAACGCCGTTAAAGGCCATGAC
8384658 TTTTAGCGGCGCTTTTTTTT
66 TTTTAGCGGCGCTTTTTTTT
8384678 AATAAACGCC
Statistics
Matches: 80, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
87 80 1.00
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.34
Consensus pattern (87 bp):
AAACGCCGCTAAAGGCCATAACTTTTAGCGGCACTTTTTTTCCAAACGCCGTTAAAGGCCATGAC
TTTTAGCGGCGCTTTTTTTTCC
Found at i:8385790 original size:18 final size:19
Alignment explanation
Indices: 8385753--8385792 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
8385743 TTATTGTATT
8385753 TGACAAAAAACATAGAAAA
1 TGACAAAAAACATAGAAAA
8385772 TGACAAAGAAA-AT-GAAAA
1 TGACAAA-AAACATAGAAAA
8385790 TGA
1 TGA
8385793 AATAAAGTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 8 0.40
19 9 0.45
20 3 0.15
ACGTcount: A:0.65, C:0.07, G:0.15, T:0.12
Consensus pattern (19 bp):
TGACAAAAAACATAGAAAA
Found at i:8386724 original size:18 final size:18
Alignment explanation
Indices: 8386718--8386752 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
8386708 ACGTATATAT
8386718 CACTATTCACATATACGA
1 CACTATTCACATATACGA
8386736 CACTATTCACATATACG
1 CACTATTCACATATACG
8386753 GTATTGTTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.37, C:0.29, G:0.06, T:0.29
Consensus pattern (18 bp):
CACTATTCACATATACGA
Found at i:8390836 original size:11 final size:11
Alignment explanation
Indices: 8390817--8390859 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
8390807 TAGAATATAC
8390817 CCCATACCTTG
1 CCCATACCTTG
* *
8390828 CCTATACCTTT
1 CCCATACCTTG
*
8390839 CCCATACC-TA
1 CCCATACCTTG
8390849 CCCATACCTTG
1 CCCATACCTTG
8390860 GAAAGGTCAA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
10 9 0.35
11 17 0.65
ACGTcount: A:0.21, C:0.44, G:0.05, T:0.30
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:8395671 original size:21 final size:22
Alignment explanation
Indices: 8395640--8395687 Score: 64
Period size: 24 Copynumber: 2.2 Consensus size: 22
8395630 TTATCTTTTT
8395640 TTTTTATTATTTT-T-CTATTA
1 TTTTTATTATTTTCTGCTATTA
8395660 TTTTTATCTATTTTCCTGCTATTA
1 TTTTTAT-TATTTT-CTGCTATTA
8395684 TTTT
1 TTTT
8395688 CACCATTCTG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.29
21 6 0.25
23 1 0.04
24 10 0.42
ACGTcount: A:0.17, C:0.10, G:0.02, T:0.71
Consensus pattern (22 bp):
TTTTTATTATTTTCTGCTATTA
Found at i:8400082 original size:22 final size:23
Alignment explanation
Indices: 8400028--8400091 Score: 94
Period size: 22 Copynumber: 2.8 Consensus size: 23
8400018 GCAACCATGA
8400028 AGCAGCCCCATACCTCCACTAAC
1 AGCAGCCCCATACCTCCACTAAC
* *
8400051 AGCGGCCCCATACCCCCACT-AC
1 AGCAGCCCCATACCTCCACTAAC
*
8400073 AGCAGTCCCATACCTCCAC
1 AGCAGCCCCATACCTCCAC
8400092 AGCCCTCGTA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
22 18 0.50
23 18 0.50
ACGTcount: A:0.27, C:0.50, G:0.11, T:0.12
Consensus pattern (23 bp):
AGCAGCCCCATACCTCCACTAAC
Found at i:8428828 original size:69 final size:72
Alignment explanation
Indices: 8428658--8428835 Score: 200
Period size: 73 Copynumber: 2.5 Consensus size: 72
8428648 CTTTCCAAGG
* ** * * *
8428658 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGATATTTTTAAGTTTA
*
8428723 TTTTCTT
66 TGTTCTT
* ** *
8428730 CAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGATATTTTT-AGTTT
1 -AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGATATTTTTAAGTTT
8428794 ATGTT-TT
65 ATGTTCTT
** *
8428801 -AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
8428836 TTTAATTTTT
Statistics
Matches: 90, Mismatches: 15, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
69 31 0.34
71 2 0.02
72 7 0.08
73 50 0.56
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (72 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGATATTTTTAAGTTTA
TGTTCTT
Found at i:8429050 original size:72 final size:72
Alignment explanation
Indices: 8428839--8429190 Score: 357
Period size: 72 Copynumber: 4.7 Consensus size: 72
8428829 TAAGCCTTTT
* * * * **
8428839 AATTTTTGTTTTTC-AAAATCAACTCATACTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
1 AATTTCTG-TTTTCAAAAATCAACTTATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAG
8428903 GTAATTTC
65 GTAATTTC
** *
8428911 AATTTCTGTGGTTAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTG
1 AATTTCTGT--TT-TCAAAAATCAACTTATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTG
8428976 AGGTAATTTC
63 AGGTAATTTC
* * * * *
8428986 AATTTCTATTTTCAAAATTCAACTTATATTACGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAAATCAACTTATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGG
*
8429051 TATTTTC
66 TAATTTC
** *
8429058 AATTTCTGTTTTCAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACAT
1 AATTTCTGTTTTC----AAAAATCAACTTATATTGCGAGAAATGAGTTGAGCCTCAGG---ACAC
*
8429122 GCTGAGGTATTTTC
59 GCTGAGGTAATTTC
* * ** *
8429136 AATTTCTGTTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 AATTTCTG-TTTT-CAAAAATCAACTTATATTGCGAGAAATGAGTTGAGCCTCAG
8429191 ATTACACAGT
Statistics
Matches: 239, Mismatches: 27, Indels: 23
0.83 0.09 0.08
Matches are distributed among these distances:
71 1 0.00
72 72 0.30
73 4 0.02
75 63 0.26
76 70 0.29
77 1 0.00
78 24 0.10
79 4 0.02
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.33
Consensus pattern (72 bp):
AATTTCTGTTTTCAAAAATCAACTTATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGG
TAATTTC
Found at i:8429210 original size:76 final size:74
Alignment explanation
Indices: 8428853--8429190 Score: 421
Period size: 76 Copynumber: 4.5 Consensus size: 74
8428843 TTTGTTTTTC
* * *
8428853 AAAATCAACTCATACTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
*
8428918 GTGGTTAAAA
66 GT-TTTAAAA
** *
8428928 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
* *
8428993 ATTTT--CA
66 GTTTTAAAA
* * * ** * *
8429000 AAATTCAACTTATATTACGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
8429065 GTTTTCAAAAA
66 GTTTT--AAAA
* *
8429076 AAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTTCAATT
*
8429140 TCTGTTTTTAAA
63 TCTGTTTTAAAA
*
8429152 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
8429191 ATTACACAGT
Statistics
Matches: 230, Mismatches: 25, Indels: 14
0.86 0.09 0.05
Matches are distributed among these distances:
72 64 0.28
74 2 0.01
75 63 0.27
76 72 0.31
77 1 0.00
78 28 0.12
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (74 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
GTTTTAAAA
Found at i:8429601 original size:27 final size:25
Alignment explanation
Indices: 8429571--8429627 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
8429561 CTGTTTTCAT
*
8429571 TATTATGTTTTTGAAAGAATCAACTCA
1 TATTATG-TTTTCAAA-AATCAACTCA
* *
8429598 TATTCTGTTTTCAAAATTCAACTCA
1 TATTATGTTTTCAAAAATCAACTCA
8429623 TATTA
1 TATTA
8429628 CGAGAAATGA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
25 13 0.50
26 7 0.27
27 6 0.23
ACGTcount: A:0.35, C:0.14, G:0.07, T:0.44
Consensus pattern (25 bp):
TATTATGTTTTCAAAAATCAACTCA
Found at i:8429727 original size:73 final size:72
Alignment explanation
Indices: 8429600--8429796 Score: 279
Period size: 73 Copynumber: 2.7 Consensus size: 72
8429590 TCAACTCATA
* * ** *
8429600 TTCTGTTTTCAAAATTCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAT
1 TTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACACTGAGGTAA
8429665 TTTCAAT
66 TTTCAAT
*
8429672 TTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGGCTCAGGACACACTGAGGTA
1 TTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACACTGAGGTA
8429737 ATTTCAAT
65 ATTTCAAT
* *
8429745 TTCTGTTGTCAAAAAAATCAACTCATATTGCGA-AAAGTGAGTTGAGCCTCAG
1 TTCTGTTTTC--AAAATTCAACTCATATTGCGAGAAA-TGAGTTGAGCCTCAG
8429797 TTCACATGTT
Statistics
Matches: 112, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
72 9 0.08
73 69 0.62
74 34 0.30
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.32
Consensus pattern (72 bp):
TTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACACTGAGGTAA
TTTCAAT
Found at i:8430352 original size:53 final size:53
Alignment explanation
Indices: 8430272--8430382 Score: 186
Period size: 53 Copynumber: 2.1 Consensus size: 53
8430262 GCAAGACCAG
* * *
8430272 GCAAAATTGGCCTCTCTTTATGTCTTTGCTCTATTCCCGTTATACGATAATGA
1 GCAAAATTGACCTCTCTTTATGTCTTTGCTCTATTCCCGTTACACGACAATGA
*
8430325 GCAAAATTGACCTCTCTTTATGTCTTTGCTCTATTCTCGTTACACGACAATGA
1 GCAAAATTGACCTCTCTTTATGTCTTTGCTCTATTCCCGTTACACGACAATGA
8430378 GCAAA
1 GCAAA
8430383 GAGGGGCAGC
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
53 54 1.00
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.37
Consensus pattern (53 bp):
GCAAAATTGACCTCTCTTTATGTCTTTGCTCTATTCCCGTTACACGACAATGA
Found at i:8430662 original size:22 final size:22
Alignment explanation
Indices: 8430637--8430678 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
8430627 CCATGAAGCA
8430637 GCCCCATA-CCTCCACTACAGCG
1 GCCCCATACCCT-CACTACAGCG
8430659 GCCCCATACCCTCACTACAG
1 GCCCCATACCCTCACTACAG
8430679 TAGTCCTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 16 0.84
23 3 0.16
ACGTcount: A:0.24, C:0.50, G:0.12, T:0.14
Consensus pattern (22 bp):
GCCCCATACCCTCACTACAGCG
Found at i:8435892 original size:26 final size:26
Alignment explanation
Indices: 8435863--8436022 Score: 275
Period size: 26 Copynumber: 6.2 Consensus size: 26
8435853 TGGTACAAAT
8435863 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
8435889 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
8435915 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
8435941 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
8435967 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
8435993 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
8436019 TGAT
1 TGAT
8436023 GGGCATTTCA
Statistics
Matches: 125, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 125 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:8437539 original size:26 final size:26
Alignment explanation
Indices: 8437510--8437562 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
8437500 TTTACAGTTT
*
8437510 TACCCTTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
8437536 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
8437562 T
1 T
8437563 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:8437944 original size:33 final size:34
Alignment explanation
Indices: 8437879--8437953 Score: 82
Period size: 33 Copynumber: 2.2 Consensus size: 34
8437869 CCATACTATT
*
8437879 ATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTA
1 ATCTGAATAAGGGGCTAAGGCCCAGTTCATTGTA
** *
8437913 ATCTGAA-AA-GGGCTCTGGCCCAGTATCATTGTT
1 ATCTGAATAAGGGGCTAAGGCCCAGT-TCATTGTA
*
8437946 ACCTGAAT
1 ATCTGAAT
8437954 GGGCTTAGGC
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
32 13 0.38
33 14 0.41
34 7 0.21
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (34 bp):
ATCTGAATAAGGGGCTAAGGCCCAGTTCATTGTA
Found at i:8441765 original size:26 final size:25
Alignment explanation
Indices: 8441731--8441779 Score: 71
Period size: 26 Copynumber: 1.9 Consensus size: 25
8441721 TTCATTAAGT
*
8441731 AATAAATTTAAAAATATAATAAATCA
1 AATAAATTTAAAAACATAA-AAATCA
*
8441757 AATATATTTAAAAACATAAAAAT
1 AATAAATTTAAAAACATAAAAAT
8441780 AATATTAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 4 0.19
26 17 0.81
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (25 bp):
AATAAATTTAAAAACATAAAAATCA
Found at i:8441796 original size:21 final size:21
Alignment explanation
Indices: 8441756--8441813 Score: 75
Period size: 21 Copynumber: 2.8 Consensus size: 21
8441746 ATAATAAATC
*
8441756 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
8441776 AAATAATATTAAAACAAATAA
1 AAATAATATTAAAACAAATAA
*
8441797 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
8441814 TTCTTAAAAC
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
20 10 0.29
21 24 0.71
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:8444727 original size:21 final size:20
Alignment explanation
Indices: 8444693--8444732 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
8444683 TTTTATATTA
*
8444693 TATTATATTATTAGTTTTAC
1 TATTATAGTATTAGTTTTAC
8444713 TATTAGTAGTATTAGTTTTA
1 TATTA-TAGTATTAGTTTTA
8444733 GTTTCAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.30, C:0.03, G:0.10, T:0.57
Consensus pattern (20 bp):
TATTATAGTATTAGTTTTAC
Found at i:8444975 original size:25 final size:25
Alignment explanation
Indices: 8444930--8444977 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
8444920 TTTTTTATAA
** *
8444930 CTATATTACGTATGTATTTTTAACG
1 CTATATTACGTACATACTTTTAACG
8444955 CTATATTACGTACATACTTTTAA
1 CTATATTACGTACATACTTTTAA
8444978 TATCATTATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.31, C:0.15, G:0.08, T:0.46
Consensus pattern (25 bp):
CTATATTACGTACATACTTTTAACG
Found at i:8445123 original size:21 final size:20
Alignment explanation
Indices: 8445076--8445116 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
8445066 TCTAATATAT
*
8445076 ATATTATGTATATCTTTTTA
1 ATATTATGTATAACTTTTTA
8445096 ATATTATGTATACACTTTTTA
1 ATATTATGTATA-ACTTTTTA
8445117 TTCTTATTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.63
21 7 0.37
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.56
Consensus pattern (20 bp):
ATATTATGTATAACTTTTTA
Found at i:8447157 original size:18 final size:18
Alignment explanation
Indices: 8447136--8447175 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
8447126 TCTATGGACT
8447136 TTTTGGGATTGT-TTTTGG
1 TTTT-GGATTGTGTTTTGG
*
8447154 TTTTGGATTTTGTTTTGG
1 TTTTGGATTGTGTTTTGG
8447172 TTTT
1 TTTT
8447176 CTAATCGTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.05, C:0.00, G:0.28, T:0.68
Consensus pattern (18 bp):
TTTTGGATTGTGTTTTGG
Found at i:8450061 original size:8 final size:8
Alignment explanation
Indices: 8450048--8450080 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
8450038 GGAAAATAAA
8450048 AATAAAAT
1 AATAAAAT
8450056 AAT-AAAT
1 AATAAAAT
8450063 AATAAAAT
1 AATAAAAT
*
8450071 AAAAAAAT
1 AATAAAAT
8450079 AA
1 AA
8450081 AACTAAAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
7 7 0.30
8 16 0.70
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (8 bp):
AATAAAAT
Found at i:8450071 original size:20 final size:19
Alignment explanation
Indices: 8450040--8450091 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 19
8450030 GTGACCAAGG
*
8450040 AAAATAAAAATAAAATAATA
1 AAAAT-AAAATAAAAAAATA
8450060 AATAATAAAATAAAAAAATA
1 AA-AATAAAATAAAAAAATA
*
8450080 AAACTAAAATAA
1 AAAATAAAATAA
8450092 TTATTTTAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 9 0.31
20 17 0.59
21 3 0.10
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (19 bp):
AAAATAAAATAAAAAAATA
Found at i:8452813 original size:21 final size:21
Alignment explanation
Indices: 8452789--8452842 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
8452779 TGAAGAGAGT
8452789 CACATGGCCGTGT-AACTAAGG
1 CACATGGCCGTGTGAACT-AGG
* * *
8452810 CACACGCCCGTGTGGACTAGG
1 CACATGGCCGTGTGAACTAGG
*
8452831 GACATGGCCGTG
1 CACATGGCCGTG
8452843 GGAATAAGCT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
21 23 0.88
22 3 0.12
ACGTcount: A:0.22, C:0.28, G:0.33, T:0.17
Consensus pattern (21 bp):
CACATGGCCGTGTGAACTAGG
Found at i:8453580 original size:5 final size:5
Alignment explanation
Indices: 8453572--8453619 Score: 55
Period size: 5 Copynumber: 9.4 Consensus size: 5
8453562 AAGGAAAAGA
8453572 AAAAT AAAAT AAAAAAT AAAAT AAAAT -AAAT -AAAT AAAACT AAAAT
1 AAAAT AAAAT --AAAAT AAAAT AAAAT AAAAT AAAAT AAAA-T AAAAT
8453618 AA
1 AA
8453620 TTATTTTAAC
Statistics
Matches: 39, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
4 8 0.21
5 21 0.54
6 5 0.13
7 5 0.13
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:8453587 original size:18 final size:17
Alignment explanation
Indices: 8453566--8453619 Score: 63
Period size: 17 Copynumber: 3.1 Consensus size: 17
8453556 ATGACCAAGG
*
8453566 AAAAGAAAAATAAAATA
1 AAAAAAAAAATAAAATA
*
8453583 AAAAATAAAATAAAATA
1 AAAAAAAAAATAAAATA
*
8453600 AATAAATAAAACTAAAATA
1 AA-AAA-AAAAATAAAATA
8453619 A
1 A
8453620 TTATTTTAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
17 17 0.55
18 3 0.10
19 11 0.35
ACGTcount: A:0.80, C:0.02, G:0.02, T:0.17
Consensus pattern (17 bp):
AAAAAAAAAATAAAATA
Found at i:8453592 original size:17 final size:18
Alignment explanation
Indices: 8453572--8453619 Score: 80
Period size: 17 Copynumber: 2.7 Consensus size: 18
8453562 AAGGAAAAGA
8453572 AAAATAAAATAAA-AAAT
1 AAAATAAAATAAATAAAT
8453589 AAAATAAAATAAATAAAT
1 AAAATAAAATAAATAAAT
8453607 AAAACTAAAATAA
1 AAAA-TAAAATAA
8453620 TTATTTTAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
17 13 0.45
18 8 0.28
19 8 0.28
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (18 bp):
AAAATAAAATAAATAAAT
Found at i:8458341 original size:16 final size:17
Alignment explanation
Indices: 8458306--8458346 Score: 57
Period size: 16 Copynumber: 2.4 Consensus size: 17
8458296 GTTTTAAATA
*
8458306 TTTTATAAAATATTTAAT
1 TTTTA-AAAATATATAAT
8458324 TTTTAAAAATATAT-AT
1 TTTTAAAAATATATAAT
8458340 TTTTAAA
1 TTTTAAA
8458347 GGGAAATTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 9 0.41
17 8 0.36
18 5 0.23
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
TTTTAAAAATATATAAT
Found at i:8458926 original size:18 final size:18
Alignment explanation
Indices: 8458903--8458965 Score: 69
Period size: 18 Copynumber: 3.5 Consensus size: 18
8458893 AACTTTTCGA
8458903 GTGAAATAAAATTTCTTT
1 GTGAAATAAAATTTCTTT
8458921 GTGAAAT--AATTT-TTT
1 GTGAAATAAAATTTCTTT
*
8458936 CGAGTGAAATAAAATTTCTTA
1 ---GTGAAATAAAATTTCTTT
8458957 GTGAAATAA
1 GTGAAATAA
8458966 TTTTTGGTAT
Statistics
Matches: 38, Mismatches: 1, Indels: 12
0.75 0.02 0.24
Matches are distributed among these distances:
15 3 0.08
16 5 0.13
18 23 0.61
20 5 0.13
21 2 0.05
ACGTcount: A:0.41, C:0.05, G:0.14, T:0.40
Consensus pattern (18 bp):
GTGAAATAAAATTTCTTT
Found at i:8458943 original size:36 final size:36
Alignment explanation
Indices: 8458896--8458970 Score: 141
Period size: 36 Copynumber: 2.1 Consensus size: 36
8458886 AAACATTAAC
*
8458896 TTTTCGAGTGAAATAAAATTTCTTTGTGAAATAATT
1 TTTTCGAGTGAAATAAAATTTCTTAGTGAAATAATT
8458932 TTTTCGAGTGAAATAAAATTTCTTAGTGAAATAATT
1 TTTTCGAGTGAAATAAAATTTCTTAGTGAAATAATT
8458968 TTT
1 TTT
8458971 GGTATCTTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.36, C:0.05, G:0.13, T:0.45
Consensus pattern (36 bp):
TTTTCGAGTGAAATAAAATTTCTTAGTGAAATAATT
Found at i:8459270 original size:29 final size:29
Alignment explanation
Indices: 8459215--8459270 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
8459205 ATCTATATTG
* **
8459215 ATTTTTTACAAAATTAAATAATTTTTTTT
1 ATTTTTGACAAAATTAAATAAAATTTTTT
8459244 ATTTTTGACAAAATTAAATAAAATTTT
1 ATTTTTGACAAAATTAAATAAAATTTT
8459271 AAGTTTACTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.43, C:0.04, G:0.02, T:0.52
Consensus pattern (29 bp):
ATTTTTGACAAAATTAAATAAAATTTTTT
Found at i:8462296 original size:625 final size:625
Alignment explanation
Indices: 8460677--8462323 Score: 2951
Period size: 625 Copynumber: 2.6 Consensus size: 625
8460667 TCTGGTCAAG
* * *
8460677 TTCCATCTTCCATCTTCAAGATTTCTTCTCTCAAGATTATTGATCTCTCCAGCAATAGCCTATCA
1 TTCCAACTTCGATCTTCAACATTTCTTCTCTCAAGATTATTGATCTCTCCAGCAATAGCCTATCA
*
8460742 GGTAGTTTGCCTAGTGATATGTGTCAACATCTTCCCAAGCTTGAAATGCTTTACTTGCATAGAAA
66 GGTAGTTTGCCTAGTGATATGTGTCAACATCTTCCCAAGCTTGAAGTGCTTTACTTGCATAGAAA
* *
8460807 TGAATTATCTGGTAACATTCCGTTAAGTATGGACAAATGCAACAACCTTAAAATGTTGGCATTAT
131 TGAATTATCTGGTAACATTCCGTTAAGTATGGACAAATGCAACAACCTTAAGATGTTGGCATTGT
* * * * * *
8460872 CTATGAATCAATTTACAGGGATCATTCCAAGAACTATTGGAAATTTGACAGGACTCGAAGAATTA
196 CCACGAACCAATTTTCGGGGATCATTCCAAGAACTATTGGAAATTTGACACGACTCGAAGAATTA
8460937 GATTTGAGGTTGAATAACTTAGAAGGTATTGAATTTCCTTGATTTCTTTAGTTTAAAGTATTTTC
261 GATTTGAGGTTGAATAACTTAGAAGGTATTGAATTTCCTTGATTTCTTTAGTTTAAAGTATTTTC
8461002 TTTGTATAAGAGTTTGATTTGTAATAGATAACAAAAGTAAGAACATTTTATTACATTCAAGGCAA
326 TTTGTATAAGAGTTTGATTTGTAATAGATAACAAAAGTAAGAACATTTTATTACATTCAAGGCAA
8461067 AATAGTTCAAAATAGTTAATTTGATGAAAAAAATATGCTTAAATATATTAAAATCTAACATCTCC
391 AATAGTTCAAAATAGTTAATTTGATGAAAAAAATATGCTTAAATATATTAAAATCTAACATCTCC
*
8461132 AAATTACTCTATTATAGAAAAGAAAACCTCTTTGATTTACACTAACAAAATAGGTAGTTAACACC
456 AAATTACTCTATTATAGAAAAGAAAACCACTTTGATTTACACTAACAAAATAGGTAGTTAACACC
8461197 TTGATGTTTCGATTATGTCTGCAGGTCAAATTCCTGAAGAAATCGGTAATCTTCTTGGTTTGGAA
521 TTGATGTTTCGATTATGTCTGCAGGTCAAATTCCTGAAGAAATCGGTAATCTTCTTGGTTTGGAA
*
8461262 ATGCTTATTATTCAAACAATTAAAGGTCTTACAGGTCAGA
586 ATGCTTATTATTCAAACAATTAAAGGTCTTACAAGTCAGA
8461302 TTCCAACTTCGATCTTCAACATTTCTTCTCTCAAGATTATTGATCTCTCCAGCAATAGCCTATCA
1 TTCCAACTTCGATCTTCAACATTTCTTCTCTCAAGATTATTGATCTCTCCAGCAATAGCCTATCA
8461367 GGTAGTTTGCCTAGTGATATGTGTCAACATCTTCCCAAGCTTGAAGTGCTTTACTTGCATAGAAA
66 GGTAGTTTGCCTAGTGATATGTGTCAACATCTTCCCAAGCTTGAAGTGCTTTACTTGCATAGAAA
8461432 TGAATTATCTGGTAACATTCCGTTAAGTATGGACAAATGCAACAACCTTAAGATGTTGGCATTGT
131 TGAATTATCTGGTAACATTCCGTTAAGTATGGACAAATGCAACAACCTTAAGATGTTGGCATTGT
8461497 CCACGAACCAATTTTCGGGGATCATTCCAAGAACTATTGGAAATTTGACACGACTCGAAGAATTA
196 CCACGAACCAATTTTCGGGGATCATTCCAAGAACTATTGGAAATTTGACACGACTCGAAGAATTA
*
8461562 GATTTGAGGTTGAATAACTTAGAAGGTATTGAATTTCCTTGATTTCTTTAGTTTAAAGTGTTTTC
261 GATTTGAGGTTGAATAACTTAGAAGGTATTGAATTTCCTTGATTTCTTTAGTTTAAAGTATTTTC
8461627 TTTGTATAAGAGTTTGATTTGTAATAGATAACAAAAGTAAGAACATTTTATTACATTCAAGGCAA
326 TTTGTATAAGAGTTTGATTTGTAATAGATAACAAAAGTAAGAACATTTTATTACATTCAAGGCAA
8461692 AATAGTTCAAAATAGTTAATTTGATGAAAAAAATATGCTTAAATATATTAAAATCTAACATCTCC
391 AATAGTTCAAAATAGTTAATTTGATGAAAAAAATATGCTTAAATATATTAAAATCTAACATCTCC
*
8461757 AAATTACTCTATTATAGGAAAGAAAACCACTTTGATTTACACTAACAAAATAGGTAGTTTAACAC
456 AAATTACTCTATTATAGAAAAGAAAACCACTTTGATTTACACTAACAAAATAGGTAG-TTAACAC
8461822 CTTGATGTTTCGATTATGTCTGCAGGTCAAATTCCTGAAGAAATCGGTAATCTTCTTGGTTTGGA
520 CTTGATGTTTCGATTATGTCTGCAGGTCAAATTCCTGAAGAAATCGGTAATCTTCTTGGTTTGGA
*
8461887 AATGCTTATTATTCAAGCAATTAAAGGTCTTACAAGTCAGA
585 AATGCTTATTATTCAAACAATTAAAGGTCTTACAAGTCAGA
* * *
8461928 TTCCAACTTCGATCTTCAACATTTCTTCTCTGAAGACTATTGATCTCTCCAACAATAGCCTATCA
1 TTCCAACTTCGATCTTCAACATTTCTTCTCTCAAGATTATTGATCTCTCCAGCAATAGCCTATCA
*
8461993 GGTAGTTTGCCTAGTGATATGTGTCAACATCTTCCCAAGCTTGAAGTGCTTTTCTTGCATAGAAA
66 GGTAGTTTGCCTAGTGATATGTGTCAACATCTTCCCAAGCTTGAAGTGCTTTACTTGCATAGAAA
* * *
8462058 TGAACTATCTGGTACCATTCCGTCAAGTATGGACAAATGCAACAACCTTAAGATGTTGGCATTGT
131 TGAATTATCTGGTAACATTCCGTTAAGTATGGACAAATGCAACAACCTTAAGATGTTGGCATTGT
8462123 CCACGAACCAATTTTCGGGGATCATTCCAAGAACTATTGGAAATTTGACACGACTCGAAGAATTA
196 CCACGAACCAATTTTCGGGGATCATTCCAAGAACTATTGGAAATTTGACACGACTCGAAGAATTA
* * * *
8462188 GATTTGTGGTTGAATAACTTAAAAGGTATTGAATTTTCTTTG-TTTCTTTAATTTAAAGTACTTT
261 GATTTGAGGTTGAATAACTTAGAAGGTATTGAA-TTTCCTTGATTTCTTTAGTTTAAAGTA-TTT
* * *
8462252 T-TCATG-A-AAGAGTTTAATTTGTAATAGATAACAAAAGTAAGAACATTTTATTTCATTCAAGG
324 TCT-TTGTATAAGAGTTTGATTTGTAATAGATAACAAAAGTAAGAACATTTTATTACATTCAAGG
8462314 CAAAATAGTT
388 CAAAATAGTT
8462324 AATTTGATGA
Statistics
Matches: 986, Mismatches: 32, Indels: 8
0.96 0.03 0.01
Matches are distributed among these distances:
625 560 0.57
626 413 0.42
627 13 0.01
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.35
Consensus pattern (625 bp):
TTCCAACTTCGATCTTCAACATTTCTTCTCTCAAGATTATTGATCTCTCCAGCAATAGCCTATCA
GGTAGTTTGCCTAGTGATATGTGTCAACATCTTCCCAAGCTTGAAGTGCTTTACTTGCATAGAAA
TGAATTATCTGGTAACATTCCGTTAAGTATGGACAAATGCAACAACCTTAAGATGTTGGCATTGT
CCACGAACCAATTTTCGGGGATCATTCCAAGAACTATTGGAAATTTGACACGACTCGAAGAATTA
GATTTGAGGTTGAATAACTTAGAAGGTATTGAATTTCCTTGATTTCTTTAGTTTAAAGTATTTTC
TTTGTATAAGAGTTTGATTTGTAATAGATAACAAAAGTAAGAACATTTTATTACATTCAAGGCAA
AATAGTTCAAAATAGTTAATTTGATGAAAAAAATATGCTTAAATATATTAAAATCTAACATCTCC
AAATTACTCTATTATAGAAAAGAAAACCACTTTGATTTACACTAACAAAATAGGTAGTTAACACC
TTGATGTTTCGATTATGTCTGCAGGTCAAATTCCTGAAGAAATCGGTAATCTTCTTGGTTTGGAA
ATGCTTATTATTCAAACAATTAAAGGTCTTACAAGTCAGA
Found at i:8466098 original size:884 final size:885
Alignment explanation
Indices: 8461767--8466170 Score: 8801
Period size: 885 Copynumber: 5.0 Consensus size: 885
8461757 AAATTACTCT
8461767 ATTATAGGAAAGAAAACCACTTTGATTTACACTAACAAAATAGGTAGTTTAACACCTTGATGTTT
1 ATTATAGGAAAGAAAACCACTTTGATTTACACTAACAAAATAGGTAGTTTAACACCTTGATGTTT
8461832 CGATTATGTCTGCAGGTCAAATTCCTGAAGAAATCGGTAATCTTCTTGGTTTGGAAATGCTTATT
66 CGATTATGTCTGCAGGTCAAATTCCTGAAGAAATCGGTAATCTTCTTGGTTTGGAAATGCTTATT
8461897 ATTCAAGCAATTAAAGGTCTTACAAGTCAGATTCCAACTTCGATCTTCAACATTTCTTCTCTGAA
131 ATTCAAGCAATTAAAGGTCTTACAAGTCAGATTCCAACTTCGATCTTCAACATTTCTTCTCTGAA
8461962 GACTATTGATCTCTCCAACAATAGCCTATCAGGTAGTTTGCCTAGTGATATGTGTCAACATCTTC
196 GACTATTGATCTCTCCAACAATAGCCTATCAGGTAGTTTGCCTAGTGATATGTGTCAACATCTTC
8462027 CCAAGCTTGAAGTGCTTTTCTTGCATAGAAATGAACTATCTGGTACCATTCCGTCAAGTATGGAC
261 CCAAGCTTGAAGTGCTTTTCTTGCATAGAAATGAACTATCTGGTACCATTCCGTCAAGTATGGAC
8462092 AAATGCAACAACCTTAAGATGTTGGCATTGTCCACGAACCAATTTTCGGGGATCATTCCAAGAAC
326 AAATGCAACAACCTTAAGATGTTGGCATTGTCCACGAACCAATTTTCGGGGATCATTCCAAGAAC
8462157 TATTGGAAATTTGACACGACTCGAAGAATTAGATTTGTGGTTGAATAACTTAAAAGGTATTGAAT
391 TATTGGAAATTTGACACGACTCGAAGAATTAGATTTGTGGTTGAATAACTTAAAAGGTATTGAAT
8462222 TTTCTTTGTTTCTTTAATTTAAAGTACTTTTTCATGAAAGAGTTTAATTTGTAATAGATAACAAA
456 TTTCTTTGTTTCTTTAATTTAAAGTACTTTTTCATGAAAGAGTTTAATTTGTAATAGATAACAAA
8462287 AGTAAGAACATTTTATTTCATTCAAGGCAAAATAGTTAATTTGATGAAAAAAATTATGTTTAAAG
521 AGTAAGAACATTTTATTTCATTCAAGGCAAAATAGTTAATTTGATGAAAAAAATTATGTTTAAAG
8462352 TATTTTTAGTTGAACAGTTTAGAAGGTATGTTTTTCACTTTAATTTTCGACTACGTGTGCAGGTC
586 TATTTTTAGTTGAACAGTTTAGAAGGTATGTTTTTCACTTTAATTTTCGACTACGTGTGCAGGTC
8462417 AGATTCCATCAGGTATAGGTGAATGTTACCAGCTTCAGAAATTAATTTTAGGAGGAAATCAATTC
651 AGATTCCATCAGGTATAGGTGAATGTTACCAGCTTCAGAAATTAATTTTAGGAGGAAATCAATTC
8462482 AGTGGGCTGATTCCAAAAAGTATTTTTAATTCAACTACGCTCGAAGAAATAGGTCTATCTGACAG
716 AGTGGGCTGATTCCAAAAAGTATTTTTAATTCAACTACGCTCGAAGAAATAGGTCTATCTGACAG
8462547 CAAATTAGAAGGTATGTTTTTCACTTTAATTTTTTCCAAACTCCAAAAACATTCTCTTTAATTTG
781 CAAATTAGAAGGTATGTTTTTCACTTTAATTTTTTCCAAACTCCAAAAACATTCTCTTTAATTTG
8462612 TTTCTTCTTTTTTGCTCATACATTTATATATTTATTTTAA
846 TTTCTTCTTTTTTGCTCATACATTTATATATTTATTTTAA
8462652 ATTATAGGAAAGAAAACCACTTTGATTTACACTAACAAAATAGGTAGTTTAACACCTTGATGTTT
1 ATTATAGGAAAGAAAACCACTTTGATTTACACTAACAAAATAGGTAGTTTAACACCTTGATGTTT
8462717 CGATTATGTCTGCAGGTCAAATTCCTGAAGAAATCGGTAATCTTCTTGGTTTGGAAATGCTTATT
66 CGATTATGTCTGCAGGTCAAATTCCTGAAGAAATCGGTAATCTTCTTGGTTTGGAAATGCTTATT
8462782 ATTCAAGCAATTAAAGGTCTTACAAGTCAGATTCCAACTTCGATCTTCAACATTTCTTCTCTGAA
131 ATTCAAGCAATTAAAGGTCTTACAAGTCAGATTCCAACTTCGATCTTCAACATTTCTTCTCTGAA
8462847 GACTATTGATCTCTCCAACAATAGCCTATCAGGTAGTTTGCCTAGTGATATGTGTCAACATCTTC
196 GACTATTGATCTCTCCAACAATAGCCTATCAGGTAGTTTGCCTAGTGATATGTGTCAACATCTTC
8462912 CCAAGCTTGAAGTGCTTTTCTTGCATAGAAATGAACTATCTGGTACCATTCCGTCAAGTATGGAC
261 CCAAGCTTGAAGTGCTTTTCTTGCATAGAAATGAACTATCTGGTACCATTCCGTCAAGTATGGAC
8462977 AAATGCAACAACCTTAAGATGTTGGCATTGTCCACGAACCAATTTTCGGGGATCATTCCAAGAAC
326 AAATGCAACAACCTTAAGATGTTGGCATTGTCCACGAACCAATTTTCGGGGATCATTCCAAGAAC
8463042 TATTGGAAATTTGACACGACTCGAAGAATTAGATTTGTGGTTGAATAACTTAAAAGGTATTGAAT
391 TATTGGAAATTTGACACGACTCGAAGAATTAGATTTGTGGTTGAATAACTTAAAAGGTATTGAAT
8463107 TTTCTTTGTTTCTTTAATTTAAAGTACTTTTTCATGAAAGAGTTTAATTTGTAATAGATAACAAA
456 TTTCTTTGTTTCTTTAATTTAAAGTACTTTTTCATGAAAGAGTTTAATTTGTAATAGATAACAAA
8463172 AGTAAGAACATTTTATTTCATTCAAGGCAAAATAGTTAATTTGATGAAAAAAATTATGTTTAAAG
521 AGTAAGAACATTTTATTTCATTCAAGGCAAAATAGTTAATTTGATGAAAAAAATTATGTTTAAAG
8463237 TATTTTTAGTTGAACAGTTTAGAAGGTATGTTTTTCACTTTAATTTTCGACTACGTGTGCAGGTC
586 TATTTTTAGTTGAACAGTTTAGAAGGTATGTTTTTCACTTTAATTTTCGACTACGTGTGCAGGTC
8463302 AGATTCCATCAGGTATAGGTGAATGTTACCAGCTTCAGAAATTAATTTTAGGAGGAAATCAATTC
651 AGATTCCATCAGGTATAGGTGAATGTTACCAGCTTCAGAAATTAATTTTAGGAGGAAATCAATTC
8463367 AGTGGGCTGATTCCAAAAAGTATTTTTAATTCAACTACGCTCGAAGAAATAGGTCTATCTGACAG
716 AGTGGGCTGATTCCAAAAAGTATTTTTAATTCAACTACGCTCGAAGAAATAGGTCTATCTGACAG
8463432 CAAATTAGAAGGTATGTTTTTCACTTTAATTTTTTCCAAACTCCAAAAACATTCTCTTTAATTTG
781 CAAATTAGAAGGTATGTTTTTCACTTTAATTTTTTCCAAACTCCAAAAACATTCTCTTTAATTTG
8463497 TTTCTTCTTTTTTGCTCATACATTTATATATTTATTTTAA
846 TTTCTTCTTTTTTGCTCATACATTTATATATTTATTTTAA
8463537 ATTATAGGAAAGAAAACCACTTTGATTTACACTAACAAAATAGGTAGTTTAACACCTTGATGTTT
1 ATTATAGGAAAGAAAACCACTTTGATTTACACTAACAAAATAGGTAGTTTAACACCTTGATGTTT
8463602 CGATTATGTCTGCAGGTCAAATTCCTGAAGAAATCGGTAATCTTCTTGGTTTGGAAATGCTTATT
66 CGATTATGTCTGCAGGTCAAATTCCTGAAGAAATCGGTAATCTTCTTGGTTTGGAAATGCTTATT
8463667 ATTCAAGCAATTAAAGGTCTTACAAGTCAGATTCCAACTTCGATCTTCAACATTTCTTCTCTGAA
131 ATTCAAGCAATTAAAGGTCTTACAAGTCAGATTCCAACTTCGATCTTCAACATTTCTTCTCTGAA
8463732 GACTATTGATCTCTCCAACAATAGCCTATCAGGTAGTTTGCCTAGTGATATGTGTCAACATCTTC
196 GACTATTGATCTCTCCAACAATAGCCTATCAGGTAGTTTGCCTAGTGATATGTGTCAACATCTTC
8463797 CCAAGCTTGAAGTGCTTTTCTTGCATAGAAATGAACTATCTGGTACCATTCCGTCAAGTATGGAC
261 CCAAGCTTGAAGTGCTTTTCTTGCATAGAAATGAACTATCTGGTACCATTCCGTCAAGTATGGAC
8463862 AAATGCAACAACCTTAAGATGTTGGCATTGTCCACGAACCAATTTTCGGGGATCATTCCAAGAAC
326 AAATGCAACAACCTTAAGATGTTGGCATTGTCCACGAACCAATTTTCGGGGATCATTCCAAGAAC
8463927 TATTGGAAATTTGACACGACTCGAAGAATTAGATTTGTGGTTGAATAACTTAAAAGGTATTGAAT
391 TATTGGAAATTTGACACGACTCGAAGAATTAGATTTGTGGTTGAATAACTTAAAAGGTATTGAAT
8463992 TTTCTTTGTTTCTTTAATTTAAAGTACTTTTTCATGAAAGAGTTTAATTTGTAATAGATAACAAA
456 TTTCTTTGTTTCTTTAATTTAAAGTACTTTTTCATGAAAGAGTTTAATTTGTAATAGATAACAAA
8464057 AGTAAGAACATTTTATTTCATTCAAGGCAAAATAGTTAATTTGATGAAAAAAATTATGTTTAAAG
521 AGTAAGAACATTTTATTTCATTCAAGGCAAAATAGTTAATTTGATGAAAAAAATTATGTTTAAAG
8464122 TATTTTTAGTTGAACAGTTTAGAAGGTATGTTTTTCACTTTAATTTTCGACTACGTGTGCAGGTC
586 TATTTTTAGTTGAACAGTTTAGAAGGTATGTTTTTCACTTTAATTTTCGACTACGTGTGCAGGTC
8464187 AGATTCCATCAGGTATAGGTGAATGTTACCAGCTTCAGAAATTAATTTTAGGAGGAAATCAATTC
651 AGATTCCATCAGGTATAGGTGAATGTTACCAGCTTCAGAAATTAATTTTAGGAGGAAATCAATTC
8464252 AGTGGGCTGATTCCAAAAAGTATTTTTAATTCAACTACGCTCGAAGAAATAGGTCTATCTGACAG
716 AGTGGGCTGATTCCAAAAAGTATTTTTAATTCAACTACGCTCGAAGAAATAGGTCTATCTGACAG
8464317 CAAATTAGAAGGTATGTTTTTCACTTTAATTTTTTCCAAACTCCAAAAACATTCTCTTTAATTTG
781 CAAATTAGAAGGTATGTTTTTCACTTTAATTTTTTCCAAACTCCAAAAACATTCTCTTTAATTTG
8464382 TTTCTTCTTTTTTGCTCATACATTTATATATTTATTTTAA
846 TTTCTTCTTTTTTGCTCATACATTTATATATTTATTTTAA
8464422 ATTATAGGAAAGAAAACCACTTTGATTTACACTAACAAAATAGGTAGTTTAACACCTTGATGTTT
1 ATTATAGGAAAGAAAACCACTTTGATTTACACTAACAAAATAGGTAGTTTAACACCTTGATGTTT
8464487 CGATTATGTCTGCAGGTCAAATTCCTGAAGAAATCGGTAATCTTCTTGGTTTGGAAATGCTTATT
66 CGATTATGTCTGCAGGTCAAATTCCTGAAGAAATCGGTAATCTTCTTGGTTTGGAAATGCTTATT
8464552 ATTCAAGCAATTAAAGGTCTTACAAGTCAGATTCCAACTTCGATCTTCAACATTTCTTCTCTGAA
131 ATTCAAGCAATTAAAGGTCTTACAAGTCAGATTCCAACTTCGATCTTCAACATTTCTTCTCTGAA
8464617 GACTATTGATCTCTCCAACAATAGCCTATCAGGTAGTTTGCCTAGTGATATGTGTCAACATCTTC
196 GACTATTGATCTCTCCAACAATAGCCTATCAGGTAGTTTGCCTAGTGATATGTGTCAACATCTTC
8464682 CCAAGCTTGAAGTGCTTTTCTTGCATAGAAATGAACTATCTGGTACCATTCCGTCAAGTATGGAC
261 CCAAGCTTGAAGTGCTTTTCTTGCATAGAAATGAACTATCTGGTACCATTCCGTCAAGTATGGAC
8464747 AAATGCAACAACCTTAAGATGTTGGCATTGTCCACGAACCAATTTTCGGGGATCATTCCAAGAAC
326 AAATGCAACAACCTTAAGATGTTGGCATTGTCCACGAACCAATTTTCGGGGATCATTCCAAGAAC
8464812 TATTGGAAATTTGACACGACTCGAAGAATTAGATTTGTGGTTGAATAACTTAAAAGGTATTGAAT
391 TATTGGAAATTTGACACGACTCGAAGAATTAGATTTGTGGTTGAATAACTTAAAAGGTATTGAAT
8464877 TTTCTTTGTTTCTTTAATTTAAAGTACTTTTTCATGAAAGAGTTTAATTTGTAATAGATAACAAA
456 TTTCTTTGTTTCTTTAATTTAAAGTACTTTTTCATGAAAGAGTTTAATTTGTAATAGATAACAAA
8464942 AGTAAGAACATTTTATTTCATTCAAGGCAAAATAGTTAATTTGATGAAAAAAATTATGTTTAAAG
521 AGTAAGAACATTTTATTTCATTCAAGGCAAAATAGTTAATTTGATGAAAAAAATTATGTTTAAAG
8465007 TATTTTTAGTTGAACAGTTTAGAAGGTATGTTTTTCACTTTAATTTTCGACTACGTGTGCAGGTC
586 TATTTTTAGTTGAACAGTTTAGAAGGTATGTTTTTCACTTTAATTTTCGACTACGTGTGCAGGTC
8465072 AGATTCCATCAGGTATAGGTGAATGTTACCAGCTTCAGAAATTAATTTTAGGAGGAAATCAATTC
651 AGATTCCATCAGGTATAGGTGAATGTTACCAGCTTCAGAAATTAATTTTAGGAGGAAATCAATTC
8465137 AGTGGGCTGATTCCAAAAAGTATTTTTAATTCAACTACGCTCGAAGAAATAGGTCTATCTGACAG
716 AGTGGGCTGATTCCAAAAAGTATTTTTAATTCAACTACGCTCGAAGAAATAGGTCTATCTGACAG
8465202 CAAATTAGAAGGTATGTTTTTCACTTTAATTTTTTCCAAACTCCAAAAACATTCTCTTTAATTTG
781 CAAATTAGAAGGTATGTTTTTCACTTTAATTTTTTCCAAACTCCAAAAACATTCTCTTTAATTTG
8465267 TTTCTTC-TTTTTGCTCATACATTTATATATTTATTTTAA
846 TTTCTTCTTTTTTGCTCATACATTTATATATTTATTTTAA
8465306 ATTATAGGAAAGAAAACCACTTTGATTTACACTAACAAAATAGGTAGTTTAACACCTTGATGTTT
1 ATTATAGGAAAGAAAACCACTTTGATTTACACTAACAAAATAGGTAGTTTAACACCTTGATGTTT
8465371 CGATTATGTCTGCAGGTCAAATTCCTGAAGAAATCGGTAATCTTCTTGGTTTGGAAATGCTTATT
66 CGATTATGTCTGCAGGTCAAATTCCTGAAGAAATCGGTAATCTTCTTGGTTTGGAAATGCTTATT
8465436 ATTCAAGCAATTAAAGGTCTTACAAGTCAGATTCCAACTTCGATCTTCAACATTTCTTCTCTGAA
131 ATTCAAGCAATTAAAGGTCTTACAAGTCAGATTCCAACTTCGATCTTCAACATTTCTTCTCTGAA
8465501 GACTATTGATCTCTCCAACAATAGCCTATCAGGTAGTTTGCCTAGTGATATGTGTCAACATCTTC
196 GACTATTGATCTCTCCAACAATAGCCTATCAGGTAGTTTGCCTAGTGATATGTGTCAACATCTTC
8465566 CCAAGCTTGAAGTGCTTTTCTTGCATAGAAATGAACTATCTGGTACCATTCCGTCAAGTATGGAC
261 CCAAGCTTGAAGTGCTTTTCTTGCATAGAAATGAACTATCTGGTACCATTCCGTCAAGTATGGAC
8465631 AAATGCAACAACCTTAAGATGTTGGCATTGTCCACGAACCAATTTTCGGGGATCATTCCAAGAAC
326 AAATGCAACAACCTTAAGATGTTGGCATTGTCCACGAACCAATTTTCGGGGATCATTCCAAGAAC
8465696 TATTGGAAATTTGACACGACTCGAAGAATTAGATTTGTGGTTGAATAACTTAAAAGGTATTGAAT
391 TATTGGAAATTTGACACGACTCGAAGAATTAGATTTGTGGTTGAATAACTTAAAAGGTATTGAAT
8465761 TTTCTTTGTTTCTTTAATTTAAAGTACTTTTTCATGAAAGAGTTTAATTTGTAATAGATAACAAA
456 TTTCTTTGTTTCTTTAATTTAAAGTACTTTTTCATGAAAGAGTTTAATTTGTAATAGATAACAAA
8465826 AGTAAGAACATTTTATTTCATTCAAGGCAAAATAGTTAATTTGATGAAAAAAATTATGTTTAAAG
521 AGTAAGAACATTTTATTTCATTCAAGGCAAAATAGTTAATTTGATGAAAAAAATTATGTTTAAAG
8465891 TATTTTTAGTTGAACAGTTTAGAAGGTATGTTTTTCACTTTAATTTTCGACTACGTGTGCAGGTC
586 TATTTTTAGTTGAACAGTTTAGAAGGTATGTTTTTCACTTTAATTTTCGACTACGTGTGCAGGTC
8465956 AGATTCCATCAGGTATAGGTGAATGTTACCAGCTTCAGAAATTAATTTTAGGAGGAAATCAATTC
651 AGATTCCATCAGGTATAGGTGAATGTTACCAGCTTCAGAAATTAATTTTAGGAGGAAATCAATTC
8466021 AGTGGGCTGATTCCAAAAAGTATTTTTAATTCAACTACGCTCGAAGAAATAGGTCTATCTGACAG
716 AGTGGGCTGATTCCAAAAAGTATTTTTAATTCAACTACGCTCGAAGAAATAGGTCTATCTGACAG
8466086 CAAATTAGAAGGTATGTTTTTCACTTTAATTTTTTCCAAACTCCAAAAACATTCTCTTTAATTTG
781 CAAATTAGAAGGTATGTTTTTCACTTTAATTTTTTCCAAACTCCAAAAACATTCTCTTTAATTTG
8466151 TTTCTTCTTTTTTGCTCATA
846 TTTCTTCTTTTTTGCTCATA
8466171 TACTTTATCA
Statistics
Matches: 3518, Mismatches: 0, Indels: 2
1.00 0.00 0.00
Matches are distributed among these distances:
884 884 0.25
885 2634 0.75
ACGTcount: A:0.32, C:0.15, G:0.16, T:0.36
Consensus pattern (885 bp):
ATTATAGGAAAGAAAACCACTTTGATTTACACTAACAAAATAGGTAGTTTAACACCTTGATGTTT
CGATTATGTCTGCAGGTCAAATTCCTGAAGAAATCGGTAATCTTCTTGGTTTGGAAATGCTTATT
ATTCAAGCAATTAAAGGTCTTACAAGTCAGATTCCAACTTCGATCTTCAACATTTCTTCTCTGAA
GACTATTGATCTCTCCAACAATAGCCTATCAGGTAGTTTGCCTAGTGATATGTGTCAACATCTTC
CCAAGCTTGAAGTGCTTTTCTTGCATAGAAATGAACTATCTGGTACCATTCCGTCAAGTATGGAC
AAATGCAACAACCTTAAGATGTTGGCATTGTCCACGAACCAATTTTCGGGGATCATTCCAAGAAC
TATTGGAAATTTGACACGACTCGAAGAATTAGATTTGTGGTTGAATAACTTAAAAGGTATTGAAT
TTTCTTTGTTTCTTTAATTTAAAGTACTTTTTCATGAAAGAGTTTAATTTGTAATAGATAACAAA
AGTAAGAACATTTTATTTCATTCAAGGCAAAATAGTTAATTTGATGAAAAAAATTATGTTTAAAG
TATTTTTAGTTGAACAGTTTAGAAGGTATGTTTTTCACTTTAATTTTCGACTACGTGTGCAGGTC
AGATTCCATCAGGTATAGGTGAATGTTACCAGCTTCAGAAATTAATTTTAGGAGGAAATCAATTC
AGTGGGCTGATTCCAAAAAGTATTTTTAATTCAACTACGCTCGAAGAAATAGGTCTATCTGACAG
CAAATTAGAAGGTATGTTTTTCACTTTAATTTTTTCCAAACTCCAAAAACATTCTCTTTAATTTG
TTTCTTCTTTTTTGCTCATACATTTATATATTTATTTTAA
Found at i:8470213 original size:13 final size:13
Alignment explanation
Indices: 8470195--8470221 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
8470185 CTTTTGCTAA
8470195 GGATTTTATTGTT
1 GGATTTTATTGTT
8470208 GGATTTTATTGTT
1 GGATTTTATTGTT
8470221 G
1 G
8470222 CTTTTCCCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.00, G:0.26, T:0.59
Consensus pattern (13 bp):
GGATTTTATTGTT
Found at i:8470951 original size:100 final size:100
Alignment explanation
Indices: 8470778--8470979 Score: 404
Period size: 100 Copynumber: 2.0 Consensus size: 100
8470768 GAGTTATTAT
8470778 GGTGTTTTCTATTTAATTTTATCATAATTGAATGTTTCATTTATAATCTAATCTAATTGTGTTTT
1 GGTGTTTTCTATTTAATTTTATCATAATTGAATGTTTCATTTATAATCTAATCTAATTGTGTTTT
8470843 TGGCTAGTGGTTGATGATCAAGGAAAACTAAAGGA
66 TGGCTAGTGGTTGATGATCAAGGAAAACTAAAGGA
8470878 GGTGTTTTCTATTTAATTTTATCATAATTGAATGTTTCATTTATAATCTAATCTAATTGTGTTTT
1 GGTGTTTTCTATTTAATTTTATCATAATTGAATGTTTCATTTATAATCTAATCTAATTGTGTTTT
8470943 TGGCTAGTGGTTGATGATCAAGGAAAACTAAAGGA
66 TGGCTAGTGGTTGATGATCAAGGAAAACTAAAGGA
8470978 GG
1 GG
8470980 CCAATAAGAA
Statistics
Matches: 102, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
100 102 1.00
ACGTcount: A:0.30, C:0.08, G:0.19, T:0.44
Consensus pattern (100 bp):
GGTGTTTTCTATTTAATTTTATCATAATTGAATGTTTCATTTATAATCTAATCTAATTGTGTTTT
TGGCTAGTGGTTGATGATCAAGGAAAACTAAAGGA
Found at i:8472937 original size:19 final size:19
Alignment explanation
Indices: 8472913--8472987 Score: 62
Period size: 19 Copynumber: 3.7 Consensus size: 19
8472903 TTGTGTATTG
8472913 TTTATTATATTATTTACAT
1 TTTATTATATTATTTACAT
**
8472932 TTTATTATA-TATTTTGAT
1 TTTATTATATTATTTACAT
* *
8472950 TTATACATTTTATTATATATCAT
1 TT-T--ATTATATTATTTA-CAT
8472973 TTTATTATATATATT
1 TTTATTATAT-TATT
8472988 ATTTTTATTC
Statistics
Matches: 42, Mismatches: 8, Indels: 10
0.70 0.13 0.17
Matches are distributed among these distances:
18 9 0.21
19 10 0.24
20 6 0.14
21 8 0.19
22 5 0.12
23 4 0.10
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.63
Consensus pattern (19 bp):
TTTATTATATTATTTACAT
Found at i:8472937 original size:26 final size:26
Alignment explanation
Indices: 8472915--8473028 Score: 78
Period size: 26 Copynumber: 4.5 Consensus size: 26
8472905 GTGTATTGTT
8472915 TATTATATTATTTACATTTTATTATA
1 TATTATATTATTTACATTTTATTATA
* *
8472941 TATTTTGATT-TATACATTTTATTATA
1 TATTAT-ATTATTTACATTTTATTATA
* * * * *
8472967 TATCATTTTATTATATATATTATT-TT
1 TATTATATTATT-TACATTTTATTATA
* * *
8472993 TATTCTATTA--TACATTATATAAT-
1 TATTATATTATTTACATTTTATTATA
8473016 TATT-TATTATTTA
1 TATTATATTATTTA
8473029 TTATTATGTA
Statistics
Matches: 66, Mismatches: 16, Indels: 14
0.69 0.17 0.15
Matches are distributed among these distances:
22 5 0.08
23 11 0.17
24 3 0.05
25 2 0.03
26 33 0.50
27 12 0.18
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.61
Consensus pattern (26 bp):
TATTATATTATTTACATTTTATTATA
Found at i:8472939 original size:14 final size:14
Alignment explanation
Indices: 8472920--8472983 Score: 80
Period size: 14 Copynumber: 4.6 Consensus size: 14
8472910 TTGTTTATTA
*
8472920 TATTATTTACATTT
1 TATTATATACATTT
8472934 TATTATAT--ATTT
1 TATTATATACATTT
8472946 TGATT-TATACATTT
1 T-ATTATATACATTT
8472960 TATTATATATCATTT
1 TATTATATA-CATTT
8472975 TATTATATA
1 TATTATATA
8472984 TATTATTTTT
Statistics
Matches: 44, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
12 8 0.18
13 6 0.14
14 16 0.36
15 14 0.32
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.61
Consensus pattern (14 bp):
TATTATATACATTT
Found at i:8472986 original size:17 final size:15
Alignment explanation
Indices: 8472920--8472984 Score: 77
Period size: 15 Copynumber: 4.7 Consensus size: 15
8472910 TTGTTTATTA
*
8472920 TATTATTTA-CATTT
1 TATTATATATCATTT
8472934 TATTATATAT--TTT
1 TATTATATATCATTT
*
8472947 GATT-TATA-CATTT
1 TATTATATATCATTT
8472960 TATTATATATCATTT
1 TATTATATATCATTT
8472975 TATTATATAT
1 TATTATATAT
8472985 ATTATTTTTA
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
12 4 0.09
13 12 0.28
14 12 0.28
15 15 0.35
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.62
Consensus pattern (15 bp):
TATTATATATCATTT
Found at i:8472995 original size:15 final size:15
Alignment explanation
Indices: 8472915--8473040 Score: 76
Period size: 14 Copynumber: 8.9 Consensus size: 15
8472905 GTGTATTGTT
*
8472915 TATTA-TATTATTTA
1 TATTATTATTATATA
*
8472929 CATT-TTATTATATA
1 TATTATTATTATATA
*
8472943 T-TT-TGATT-TATA
1 TATTATTATTATATA
*
8472955 CATT-TTATTATATA
1 TATTATTATTATATA
8472969 TCATT-TTATTATATA
1 T-ATTATTATTATATA
* *
8472984 TATTATTTTTAT-TC
1 TATTATTATTATATA
*
8472998 TATTATACATTATATA
1 TATTAT-TATTATATA
8473014 -ATTATTTATTAT-T-
1 TATTA-TTATTATATA
8473027 TATTATTATGTATA
1 TATTATTAT-TATA
8473041 ATTTTAAAAA
Statistics
Matches: 88, Mismatches: 13, Indels: 21
0.72 0.11 0.17
Matches are distributed among these distances:
12 4 0.05
13 16 0.18
14 33 0.38
15 33 0.38
16 2 0.02
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (15 bp):
TATTATTATTATATA
Found at i:8473012 original size:30 final size:29
Alignment explanation
Indices: 8472976--8473032 Score: 89
Period size: 29 Copynumber: 1.9 Consensus size: 29
8472966 ATATCATTTT
8472976 ATTATATATATTATTT-TTATTCTATTATAC
1 ATTATATA-ATTATTTATTATT-TATTATAC
8473006 ATTATATAATTATTTATTATTTATTAT
1 ATTATATAATTATTTATTATTTATTAT
8473033 TATGTATAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
29 13 0.50
30 13 0.50
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (29 bp):
ATTATATAATTATTTATTATTTATTATAC
Found at i:8473209 original size:19 final size:19
Alignment explanation
Indices: 8473141--8473210 Score: 65
Period size: 19 Copynumber: 3.8 Consensus size: 19
8473131 GTTTTGCTCC
8473141 TATTTA-ATATA-ATATTA
1 TATTTATATATATATATTA
* *
8473158 TTTTTATAAATATATATTA
1 TATTTATATATATATATTA
* * *
8473177 -AGTTATTATTTATATAGTA
1 TATTTA-TATATATATATTA
8473196 TATTTATATATATAT
1 TATTTATATATATAT
8473211 TAACCATTTT
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
17 5 0.12
18 7 0.17
19 24 0.60
20 4 0.10
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (19 bp):
TATTTATATATATATATTA
Found at i:8473751 original size:40 final size:41
Alignment explanation
Indices: 8473630--8473876 Score: 193
Period size: 41 Copynumber: 6.3 Consensus size: 41
8473620 TAATATACAT
* * * * * *
8473630 TAGCGGCG--TTTGTCCGAAACGCCACTAAAAGCTAAACTA
1 TAGCGGCGTTTTTCTCCAAAACGCCACTAAAAACTGATCAA
* *
8473669 TAGCGGCGTTTTT-TGGCAAAAACGCCACTAAAAACTGGTCAA
1 TAGCGGCGTTTTTCT--CCAAAACGCCACTAAAAACTGATCAA
*
8473711 TAGCGGCGTTTTTCT-CAAAACGCCACTAAAAGCTGATCAA
1 TAGCGGCGTTTTTCTCCAAAACGCCACTAAAAACTGATCAA
8473751 TAGCGGCGTTTTAATCT-C-AAACGCCACT---AA---AT---
1 TAGCGGCGTTTT--TCTCCAAAACGCCACTAAAAACTGATCAA
* * *
8473783 T-GCGGCGTTTTTGTCCCAAACGCCACAAAAAACTGATCAA
1 TAGCGGCGTTTTTCTCCAAAACGCCACTAAAAACTGATCAA
* * * * *
8473823 TTGTGGTGTTTTTATCCAAAACGCCACTAAAAACTGATTAA
1 TAGCGGCGTTTTTCTCCAAAACGCCACTAAAAACTGATCAA
8473864 TAGCGGCGTTTTT
1 TAGCGGCGTTTTT
8473877 GGTCCAAACG
Statistics
Matches: 167, Mismatches: 22, Indels: 36
0.74 0.10 0.16
Matches are distributed among these distances:
29 2 0.01
30 1 0.01
31 19 0.11
32 1 0.01
34 2 0.01
35 2 0.01
37 2 0.01
38 1 0.01
39 8 0.05
40 36 0.22
41 56 0.34
42 36 0.22
43 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.27
Consensus pattern (41 bp):
TAGCGGCGTTTTTCTCCAAAACGCCACTAAAAACTGATCAA
Found at i:8473834 original size:72 final size:71
Alignment explanation
Indices: 8473713--8473853 Score: 185
Period size: 72 Copynumber: 2.0 Consensus size: 71
8473703 CTGGTCAATA
* *
8473713 GCGGCGTTTTTCTCAAAACGCCACTAAAAGCTGATCAATAGCGGCGTTTTAATCTC-AAACGCCA
1 GCGGCGTTTTTCTCAAAACGCCACAAAAAACTGATCAATAGCGGCGTTTTAATC-CAAAACGCCA
8473777 CTAAATT
65 CTAAATT
* * * * * *
8473784 GCGGCGTTTTTGTCCCAAACGCCACAAAAAACTGATCAATTGTGGTGTTTTTATCCAAAACGCCA
1 GCGGCGTTTTTCT-CAAAACGCCACAAAAAACTGATCAATAGCGGCGTTTTAATCCAAAACGCCA
8473849 CTAAA
65 CTAAA
8473854 AACTGATTAA
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
71 13 0.22
72 47 0.78
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (71 bp):
GCGGCGTTTTTCTCAAAACGCCACAAAAAACTGATCAATAGCGGCGTTTTAATCCAAAACGCCAC
TAAATT
Found at i:8473845 original size:41 final size:40
Alignment explanation
Indices: 8473780--8473895 Score: 142
Period size: 41 Copynumber: 2.8 Consensus size: 40
8473770 AACGCCACTA
8473780 AATTGCGGCGTTTTTGTCCCAAACGCCACAAAAAACTGATC
1 AATTGCGGCGTTTTTGT-CCAAACGCCACAAAAAACTGATC
* * * * *
8473821 AATTGTGGTGTTTTTATCCAAAACGCCACTAAAAACTGATT
1 AATTGCGGCGTTTTTGTCC-AAACGCCACAAAAAACTGATC
* *
8473862 AATAGCGGCGTTTTTGGTCCAAACGCCGCAAAAA
1 AATTGCGGCGTTTTT-GTCCAAACGCCACAAAAA
8473896 GTTTAGCAGG
Statistics
Matches: 62, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
40 2 0.03
41 57 0.92
42 3 0.05
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (40 bp):
AATTGCGGCGTTTTTGTCCAAACGCCACAAAAAACTGATC
Found at i:8474023 original size:28 final size:26
Alignment explanation
Indices: 8473971--8474023 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
8473961 TATTATTTTC
* *
8473971 TTATTTTTATTTTGAAGTTAATTTAA
1 TTATTTTTATTTTAAAGCTAATTTAA
*
8473997 TTATTTTTGTATTTAAAGCTAACTTTA
1 TTATTTTTAT-TTTAAAGCTAA-TTTA
8474024 TAAAAAAATA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 9 0.41
27 9 0.41
28 4 0.18
ACGTcount: A:0.30, C:0.04, G:0.08, T:0.58
Consensus pattern (26 bp):
TTATTTTTATTTTAAAGCTAATTTAA
Found at i:8474238 original size:28 final size:28
Alignment explanation
Indices: 8474178--8474244 Score: 73
Period size: 28 Copynumber: 2.4 Consensus size: 28
8474168 TGGCTTTCTG
* *
8474178 TAAACCCTTAAATCTTAAACATTAAACCC
1 TAAACCC-TAAATCTTAAACATTAAAACA
*
8474207 TAAACCCTAAATTTTAAATCA-TAAAACA
1 TAAACCCTAAATCTTAAA-CATTAAAACA
*
8474235 TAAACACTAA
1 TAAACCCTAA
8474245 TCCATAAACT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
28 24 0.73
29 9 0.27
ACGTcount: A:0.51, C:0.22, G:0.00, T:0.27
Consensus pattern (28 bp):
TAAACCCTAAATCTTAAACATTAAAACA
Found at i:8474497 original size:43 final size:45
Alignment explanation
Indices: 8474431--8474520 Score: 112
Period size: 43 Copynumber: 2.0 Consensus size: 45
8474421 TATGGTTTAG
* * * *
8474431 GGTTCAATGGTAGAATTAATATATTTTAAGTTTATGGTTTAGGCC
1 GGTTCAATGGTAGAAGTAATATATATTAAGTTAATGGTATAGGCC
* *
8474476 GGTTCAATGGTA-TAGT-ATATATATTAAGTTAATGGTATGGGCC
1 GGTTCAATGGTAGAAGTAATATATATTAAGTTAATGGTATAGGCC
8474519 GG
1 GG
8474521 GTTTGTTATC
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
43 25 0.64
44 2 0.05
45 12 0.31
ACGTcount: A:0.29, C:0.07, G:0.26, T:0.39
Consensus pattern (45 bp):
GGTTCAATGGTAGAAGTAATATATATTAAGTTAATGGTATAGGCC
Found at i:8476236 original size:14 final size:15
Alignment explanation
Indices: 8476217--8476246 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
8476207 TGTGTTTATA
8476217 TAAATACAT-AATTC
1 TAAATACATAAATTC
8476231 TAAATACATAAATTC
1 TAAATACATAAATTC
8476246 T
1 T
8476247 GAAGTTTGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.50, C:0.13, G:0.00, T:0.37
Consensus pattern (15 bp):
TAAATACATAAATTC
Found at i:8478766 original size:23 final size:23
Alignment explanation
Indices: 8478736--8478785 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
8478726 AACATTAATC
8478736 AAATGTATGAATTGCAGCCCTTT
1 AAATGTATGAATTGCAGCCCTTT
8478759 AAATGTATGAATTGCAGCCCTTT
1 AAATGTATGAATTGCAGCCCTTT
8478782 AAAT
1 AAAT
8478786 AAACTTGAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (23 bp):
AAATGTATGAATTGCAGCCCTTT
Found at i:8479487 original size:9 final size:9
Alignment explanation
Indices: 8479464--8479591 Score: 121
Period size: 9 Copynumber: 13.6 Consensus size: 9
8479454 ATTGATCATT
*
8479464 ACTTAAATA
1 ACTTACATA
*
8479473 AATTACATA
1 ACTTACATA
8479482 ACTTACATA
1 ACTTACATA
* *
8479491 ACTCATATA
1 ACTTACATA
8479500 ACTTACATA
1 ACTTACATA
*
8479509 ATTTACATAA
1 ACTTACAT-A
8479519 CCACTTACATA
1 --ACTTACATA
*
8479530 ACTCACATA
1 ACTTACATA
8479539 ACTTACATA
1 ACTTACATA
*
8479548 ATTTACATA
1 ACTTACATA
*
8479557 ACTCACATA
1 ACTTACATA
*
8479566 ACGTACATAACA
1 ACTTACAT---A
8479578 ACTTACATA
1 ACTTACATA
8479587 ACTTA
1 ACTTA
8479592 ACTAATACAT
Statistics
Matches: 96, Mismatches: 17, Indels: 12
0.77 0.14 0.10
Matches are distributed among these distances:
9 79 0.82
10 1 0.01
11 1 0.01
12 15 0.16
ACGTcount: A:0.46, C:0.22, G:0.01, T:0.31
Consensus pattern (9 bp):
ACTTACATA
Found at i:8479534 original size:39 final size:39
Alignment explanation
Indices: 8479482--8479558 Score: 145
Period size: 39 Copynumber: 2.0 Consensus size: 39
8479472 AAATTACATA
*
8479482 ACTTACATAACTCATATAACTTACATAATTTACATAACC
1 ACTTACATAACTCACATAACTTACATAATTTACATAACC
8479521 ACTTACATAACTCACATAACTTACATAATTTACATAAC
1 ACTTACATAACTCACATAACTTACATAATTTACATAAC
8479559 TCACATAACG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.44, C:0.23, G:0.00, T:0.32
Consensus pattern (39 bp):
ACTTACATAACTCACATAACTTACATAATTTACATAACC
Found at i:8479558 original size:57 final size:57
Alignment explanation
Indices: 8479477--8479589 Score: 163
Period size: 57 Copynumber: 2.0 Consensus size: 57
8479467 TAAATAAATT
* * ** *
8479477 ACATAACTTACATAACTCATATAACTTACATAATTTACATAACCACTTACATAACTC
1 ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACTC
* *
8479534 ACATAACTTACATAATTTACATAACTCACATAACGTACATAACAACTTACATAACT
1 ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACT
8479590 TAACTAATAC
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
57 49 1.00
ACGTcount: A:0.45, C:0.24, G:0.01, T:0.30
Consensus pattern (57 bp):
ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACTC
Found at i:8485193 original size:15 final size:16
Alignment explanation
Indices: 8485168--8485198 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
8485158 GCAACAACTT
8485168 AGAGCGGAGGCAGCAG
1 AGAGCGGAGGCAGCAG
8485184 AGAG-GGAGGCAGCAG
1 AGAGCGGAGGCAGCAG
8485199 CTGCAGCTGC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.32, C:0.16, G:0.52, T:0.00
Consensus pattern (16 bp):
AGAGCGGAGGCAGCAG
Found at i:8485648 original size:43 final size:43
Alignment explanation
Indices: 8485618--8485801 Score: 244
Period size: 43 Copynumber: 4.2 Consensus size: 43
8485608 GCGTTTGTAA
*
8485618 AAAAAGCGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCC
1 AAAAA-CGCCGCTAAAAGACTTGACCTTTAGCGGCGCTTTTCCC
* *
8485662 ACAAACGCAGCTAAAAGACTTGACCTTTAGCGGCGCTTTTCCC
1 AAAAACGCCGCTAAAAGACTTGACCTTTAGCGGCGCTTTTCCC
*
8485705 ACAAACGCCGCTAAAA-ACCTTGACCTTTAGCGGCGCTTTTCCC
1 AAAAACGCCGCTAAAAGA-CTTGACCTTTAGCGGCGCTTTTCCC
* * * * *
8485748 ACAACCGCCGTTAAAAGACTTGACCTTTAGCGGCACTTTTTTCC
1 AAAAACGCCGCTAAAAGACTTGACCTTTAGCGGCGC-TTTTCCC
8485792 AATAAACGCC
1 AA-AAACGCC
8485802 ACAAATTTTT
Statistics
Matches: 126, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
42 1 0.01
43 107 0.85
44 12 0.10
45 6 0.05
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (43 bp):
AAAAACGCCGCTAAAAGACTTGACCTTTAGCGGCGCTTTTCCC
Found at i:8485746 original size:86 final size:86
Alignment explanation
Indices: 8485624--8485787 Score: 283
Period size: 86 Copynumber: 1.9 Consensus size: 86
8485614 GTAAAAAAAG
*
8485624 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCAGCTAAAAGACTTGACCTT
1 CGCCGCTAAAAACCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCAGCTAAAAGACTTGACCTT
*
8485689 TAGCGGCGCTTTTCCCACAAA
66 TAGCGGCACTTTTCCCACAAA
* * *
8485710 CGCCGCTAAAAACCTTGACCTTTAGCGGCGCTTTTCCCACAACCGCCGTTAAAAGACTTGACCTT
1 CGCCGCTAAAAACCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCAGCTAAAAGACTTGACCTT
8485775 TAGCGGCACTTTT
66 TAGCGGCACTTTT
8485788 TTCCAATAAA
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
86 73 1.00
ACGTcount: A:0.24, C:0.32, G:0.18, T:0.25
Consensus pattern (86 bp):
CGCCGCTAAAAACCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCAGCTAAAAGACTTGACCTT
TAGCGGCACTTTTCCCACAAA
Found at i:8487068 original size:41 final size:41
Alignment explanation
Indices: 8487039--8487220 Score: 285
Period size: 41 Copynumber: 4.5 Consensus size: 41
8487029 CGTTTTTTAC
*
8487039 TAAAACGCCGCTAAAAA-TAGAGCATTAGCGGCGCTTTAGG
1 TAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTAGG
* *
8487079 GAAAACGCCGCTAAAAACCAGGGCATTAGCGGCGCTTTAGG
1 TAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTAGG
*
8487120 TAAAACGCCGCTAAAAACCAGGGCATTAGCGGCGCTTTAGG
1 TAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTAGG
* * *
8487161 GAAAACGCCACTAAAAACCAGGGCATTAGCGGCGCTTTAGG
1 TAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTAGG
*
8487202 GAAAACGCCGCTAAAAACC
1 TAAAACGCCGCTAAAAACC
8487221 CCATAACCCC
Statistics
Matches: 134, Mismatches: 7, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
40 16 0.12
41 118 0.88
ACGTcount: A:0.35, C:0.24, G:0.26, T:0.15
Consensus pattern (41 bp):
TAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTAGG
Found at i:8487157 original size:82 final size:82
Alignment explanation
Indices: 8487039--8487220 Score: 321
Period size: 82 Copynumber: 2.2 Consensus size: 82
8487029 CGTTTTTTAC
* *
8487039 TAAAACGCCGCTAAAAA-TAGAGCATTAGCGGCGCTTTAGGGAAAACGCCGCTAAAAACCAGGGC
1 TAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTAGGGAAAACGCCACTAAAAACCAGGGC
8487103 ATTAGCGGCGCTTTAGG
66 ATTAGCGGCGCTTTAGG
*
8487120 TAAAACGCCGCTAAAAACCAGGGCATTAGCGGCGCTTTAGGGAAAACGCCACTAAAAACCAGGGC
1 TAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTAGGGAAAACGCCACTAAAAACCAGGGC
8487185 ATTAGCGGCGCTTTAGG
66 ATTAGCGGCGCTTTAGG
*
8487202 GAAAACGCCGCTAAAAACC
1 TAAAACGCCGCTAAAAACC
8487221 CCATAACCCC
Statistics
Matches: 96, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
81 17 0.18
82 79 0.82
ACGTcount: A:0.35, C:0.24, G:0.26, T:0.15
Consensus pattern (82 bp):
TAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTAGGGAAAACGCCACTAAAAACCAGGGC
ATTAGCGGCGCTTTAGG
Found at i:8488270 original size:15 final size:15
Alignment explanation
Indices: 8488250--8488281 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
8488240 TTTAATTTAG
*
8488250 AAGATAAATGTATAT
1 AAGATAAATATATAT
8488265 AAGATAAATATATAT
1 AAGATAAATATATAT
8488280 AA
1 AA
8488282 AATATTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.31
Consensus pattern (15 bp):
AAGATAAATATATAT
Found at i:8488281 original size:10 final size:10
Alignment explanation
Indices: 8488268--8488321 Score: 54
Period size: 10 Copynumber: 5.0 Consensus size: 10
8488258 TGTATATAAG
8488268 ATAAATATAT
1 ATAAATATAT
8488278 ATAAAATATTATT
1 AT-AAATA-TA-T
*
8488291 TTAAAATATAT
1 AT-AAATATAT
8488302 ATAAATATAT
1 ATAAATATAT
*
8488312 ATATATATAT
1 ATAAATATAT
8488322 GAAAAGTGGT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
10 19 0.50
11 7 0.18
12 4 0.11
13 8 0.21
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (10 bp):
ATAAATATAT
Found at i:8507876 original size:90 final size:90
Alignment explanation
Indices: 8507734--8508273 Score: 684
Period size: 90 Copynumber: 6.2 Consensus size: 90
8507724 TCACTGATAG
* * *
8507734 CAGATTTGACATCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGT
1 CAGATTTGGCGTCTCCGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGT
8507799 TTACATCGAAGCAGATCGAAAATGA
66 TTACATCGAAGCAGATCGAAAATGA
* * * * * * *
8507824 TAGATTTGGCATCTCCGTACTAGATGGGGAGCAGATCAAATATAGCAAATCTGACATTCGTGTGT
1 CAGATTTGGCGTCTCCGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGT
* * * *
8507889 TTACATCAAAGTATATCAAAAATGA
66 TTACATCGAAGCAGATCGAAAATGA
*
8507914 CAGATTTGGCGTCTCCGTATTAGACGGGGAGCAGATCGAAGATAGCAGATTTGACATTC--GTG-
1 CAGATTTGGCGTCTCCGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGT
* *
8507976 -----T-GAAGCAGATTGAAGATGA
66 TTACATCGAAGCAGATCGAAAATGA
** *
8507995 CAGATTTGGCACCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGT
1 CAGATTTGGCGTCTCCGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGT
*
8508060 TTACATCGAAGCAGATTGAAAATGA
66 TTACATCGAAGCAGATCGAAAATGA
* * *
8508085 CAGATTTGGCGTCTCCGTATTAGATGGGGAGCAGATCGAAGATAGCAGATTTGGCATTC--GTG-
1 CAGATTTGGCGTCTCCGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGT
*
8508147 -----T-GAAGCAGATCGAAGATGA
66 TTACATCGAAGCAGATCGAAAATGA
** * *
8508166 CAGATTTGGCGTCTCTATATTAGACGGGGAGTAGATCGAAGATAGTAGATCTGACATTCGTGTGT
1 CAGATTTGGCGTCTCCGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGT
8508231 TTACATCGAAGCAGATCGAAAATGA
66 TTACATCGAAGCAGATCGAAAATGA
*
8508256 TAGATTTGGCGTCTCCGT
1 CAGATTTGGCGTCTCCGT
8508274 TCGAAGATGA
Statistics
Matches: 382, Mismatches: 50, Indels: 36
0.82 0.11 0.08
Matches are distributed among these distances:
81 135 0.35
82 2 0.01
83 6 0.02
88 6 0.02
89 2 0.01
90 231 0.60
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.27
Consensus pattern (90 bp):
CAGATTTGGCGTCTCCGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGT
TTACATCGAAGCAGATCGAAAATGA
Found at i:8508050 original size:81 final size:81
Alignment explanation
Indices: 8507910--8508229 Score: 442
Period size: 81 Copynumber: 3.8 Consensus size: 81
8507900 TATATCAAAA
*
8507910 ATGACAGATTTGGCGTCTCCGTATTAGACGGGGAGCAGATCGAAGATAGCAGATTTGACATTCGT
1 ATGACAGATTTGGCGTCTCCGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGT
8507975 GTGAAGCAGATTGAAG
66 GTGAAGCAGATTGAAG
** *
8507991 ATGACAGATTTGGCACCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGT
1 ATGACAGATTTGGCGTCTCCGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTC--
*
8508056 GTGTTTACATCGAAGCAGATTGAAA
64 GTG------T-GAAGCAGATTGAAG
* * *
8508081 ATGACAGATTTGGCGTCTCCGTATTAGATGGGGAGCAGATCGAAGATAGCAGATTTGGCATTCGT
1 ATGACAGATTTGGCGTCTCCGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGT
*
8508146 GTGAAGCAGATCGAAG
66 GTGAAGCAGATTGAAG
** * *
8508162 ATGACAGATTTGGCGTCTCTATATTAGACGGGGAGTAGATCGAAGATAGTAGATCTGACATTCGT
1 ATGACAGATTTGGCGTCTCCGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGT
8508227 GTG
66 GTG
8508230 TTTACATCGA
Statistics
Matches: 210, Mismatches: 20, Indels: 18
0.85 0.08 0.07
Matches are distributed among these distances:
81 132 0.63
82 1 0.00
83 3 0.01
88 3 0.01
89 1 0.00
90 70 0.33
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.26
Consensus pattern (81 bp):
ATGACAGATTTGGCGTCTCCGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGT
GTGAAGCAGATTGAAG
Found at i:8508066 original size:171 final size:171
Alignment explanation
Indices: 8507734--8508273 Score: 765
Period size: 171 Copynumber: 3.1 Consensus size: 171
8507724 TCACTGATAG
* * * *
8507734 CAGATTTGACATCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGT
1 CAGATTTGGCGTCTCCGTATTAGACGGGGAGCAGATCGAAGATAGCAGATTTGACATTC--GTG-
* * * * * *
8507799 TTACATCGAAGCAGATCGAAAATGATAGATTTGGCATCTCCGTACTAGATGGGGAGCAGATCAAA
63 -----T-GAAGCAGATCGAAGATGACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAA
* * * * * *
8507864 TATAGCAAATCTGACATTCGTGTGTTTACATCAAAGTATATCAAAAATGA
122 GATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAAATGA
8507914 CAGATTTGGCGTCTCCGTATTAGACGGGGAGCAGATCGAAGATAGCAGATTTGACATTCGTGTGA
1 CAGATTTGGCGTCTCCGTATTAGACGGGGAGCAGATCGAAGATAGCAGATTTGACATTCGTGTGA
* *
8507979 AGCAGATTGAAGATGACAGATTTGGCACCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGA
66 AGCAGATCGAAGATGACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGA
*
8508044 TCTGACATTCGTGTGTTTACATCGAAGCAGATTGAAAATGA
131 TCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAAATGA
* *
8508085 CAGATTTGGCGTCTCCGTATTAGATGGGGAGCAGATCGAAGATAGCAGATTTGGCATTCGTGTGA
1 CAGATTTGGCGTCTCCGTATTAGACGGGGAGCAGATCGAAGATAGCAGATTTGACATTCGTGTGA
* * * *
8508150 AGCAGATCGAAGATGACAGATTTGGCGTCTCTATATTAGACGGGGAGTAGATCGAAGATAGTAGA
66 AGCAGATCGAAGATGACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGA
8508215 TCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAAATGA
131 TCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAAATGA
*
8508256 TAGATTTGGCGTCTCCGT
1 CAGATTTGGCGTCTCCGT
8508274 TCGAAGATGA
Statistics
Matches: 331, Mismatches: 29, Indels: 9
0.90 0.08 0.02
Matches are distributed among these distances:
171 272 0.82
172 1 0.00
178 3 0.01
180 55 0.17
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.27
Consensus pattern (171 bp):
CAGATTTGGCGTCTCCGTATTAGACGGGGAGCAGATCGAAGATAGCAGATTTGACATTCGTGTGA
AGCAGATCGAAGATGACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGA
TCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAAATGA
Found at i:8508363 original size:45 final size:45
Alignment explanation
Indices: 8508311--8508647 Score: 190
Period size: 45 Copynumber: 7.5 Consensus size: 45
8508301 ATTAGACAGA
8508311 GAGCAGATCGAAGATAGAAGATCTGACATTCGTGTGTTTACATCG
1 GAGCAGATCGAAGATAGAAGATCTGACATTCGTGTGTTTACATCG
* * * * * * *
8508356 GAGCAGATCGAAGAT-GACAGATTTGGCGTCTC-TATATTAGACA-GG
1 GAGCAGATCGAAGATAGA-AGATCTGACAT-TCGTGTGTT-TACATCG
* *
8508401 GAGCAGATCGAAGATAGCAGATCTAACATTCGTGTGTTTACATCG
1 GAGCAGATCGAAGATAGAAGATCTGACATTCGTGTGTTTACATCG
* * * * * * * *
8508446 AAGCAGATCGAAAAT-GACAGATTTGGCGTCTC-TGTATTAGACA-GG
1 GAGCAGATCGAAGATAGA-AGATCTGACAT-TCGTGTGTT-TACATCG
* * * * *
8508491 GGGCAGATTGAAGATAGCAGATCTGATATTCGTGTGTTTACATTG
1 GAGCAGATCGAAGATAGAAGATCTGACATTCGTGTGTTTACATCG
* * * * * * * *
8508536 AAGCAGATCGAAAAT-GACAGATTTGGCGTCTC-TAT-ATTAGA-CGGG
1 GAGCAGATCGAAGATAGA-AGATCTGACAT-TCGTGTGTTTACATC--G
* * * *
8508581 GAGCAGATCGAAGATAGCAGAACTGACATTCGTATGTTTACATCA
1 GAGCAGATCGAAGATAGAAGATCTGACATTCGTGTGTTTACATCG
* *
8508626 AAGCAGATCGAAGATAGCAGAT
1 GAGCAGATCGAAGATAGAAGAT
8508648 TTGGCGCTCT
Statistics
Matches: 209, Mismatches: 63, Indels: 40
0.67 0.20 0.13
Matches are distributed among these distances:
44 20 0.10
45 169 0.81
46 19 0.09
47 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.26
Consensus pattern (45 bp):
GAGCAGATCGAAGATAGAAGATCTGACATTCGTGTGTTTACATCG
Found at i:8508378 original size:117 final size:118
Alignment explanation
Indices: 8508156--8508387 Score: 367
Period size: 117 Copynumber: 2.0 Consensus size: 118
8508146 GTGAAGCAGA
* * * * *
8508156 TCGAAGATGACAGATTTGGCGTCTCTATATTAGACGGGGAGTAGATCGAAGATAGTAGATCTGAC
1 TCGAAGATGACAGATTTGGCGTCCCTATATTAGACAGAGAGCAGATCGAAGATAGAAGATCTGAC
*
8508221 ATTCGTGTGTTTACATCGAAGCAGATCGAAAATGATAGATTTGGCGTCTCCGT
66 ATTCGTGTGTTTACATCGAAGCAGATCGAAAATGACAGATTTGGCGTCTCCGT
* *
8508274 TCGAAGATGATAGA-TTGGCGTCCCTGTATTAGACAGAGAGCAGATCGAAGATAGAAGATCTGAC
1 TCGAAGATGACAGATTTGGCGTCCCTATATTAGACAGAGAGCAGATCGAAGATAGAAGATCTGAC
* *
8508338 ATTCGTGTGTTTACATCGGAGCAGATCGAAGATGACAGATTTGGCGTCTC
66 ATTCGTGTGTTTACATCGAAGCAGATCGAAAATGACAGATTTGGCGTCTC
8508388 TATATTAGAC
Statistics
Matches: 104, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
117 91 0.88
118 13 0.12
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.27
Consensus pattern (118 bp):
TCGAAGATGACAGATTTGGCGTCCCTATATTAGACAGAGAGCAGATCGAAGATAGAAGATCTGAC
ATTCGTGTGTTTACATCGAAGCAGATCGAAAATGACAGATTTGGCGTCTCCGT
Found at i:8508396 original size:90 final size:90
Alignment explanation
Indices: 8508274--8508662 Score: 586
Period size: 90 Copynumber: 4.3 Consensus size: 90
8508264 GCGTCTCCGT
* * * *
8508274 TCGAAGATGATAGA-TTGGCGTCCCTGTATTAGACAGAGAGCAGATCGAAGATAGAAGATCTGAC
1 TCGAAGATGACAGATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCGAAGATAGCAGATCTGAC
*
8508338 ATTCGTGTGTTTACATCGGAGCAGA
66 ATTCGTGTGTTTACATCGAAGCAGA
* *
8508363 TCGAAGATGACAGATTTGGCGTCTCTATATTAGACAGGGAGCAGATCGAAGATAGCAGATCTAAC
1 TCGAAGATGACAGATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCGAAGATAGCAGATCTGAC
8508428 ATTCGTGTGTTTACATCGAAGCAGA
66 ATTCGTGTGTTTACATCGAAGCAGA
* * * *
8508453 TCGAAAATGACAGATTTGGCGTCTCTGTATTAGACAGGGGGCAGATTGAAGATAGCAGATCTGAT
1 TCGAAGATGACAGATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCGAAGATAGCAGATCTGAC
*
8508518 ATTCGTGTGTTTACATTGAAGCAGA
66 ATTCGTGTGTTTACATCGAAGCAGA
* * * *
8508543 TCGAAAATGACAGATTTGGCGTCTCTATATTAGACGGGGAGCAGATCGAAGATAGCAGAACTGAC
1 TCGAAGATGACAGATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCGAAGATAGCAGATCTGAC
* *
8508608 ATTCGTATGTTTACATCAAAGCAGA
66 ATTCGTGTGTTTACATCGAAGCAGA
8508633 TCGAAGAT-AGCAGATTTGGCG-CTCTGTATT
1 TCGAAGATGA-CAGATTTGGCGTCTCTGTATT
8508663 TGATGGGAAG
Statistics
Matches: 273, Mismatches: 25, Indels: 4
0.90 0.08 0.01
Matches are distributed among these distances:
89 22 0.08
90 251 0.92
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.26
Consensus pattern (90 bp):
TCGAAGATGACAGATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCGAAGATAGCAGATCTGAC
ATTCGTGTGTTTACATCGAAGCAGA
Found at i:8510186 original size:19 final size:19
Alignment explanation
Indices: 8510162--8510254 Score: 64
Period size: 20 Copynumber: 4.7 Consensus size: 19
8510152 TTGTGTATTG
8510162 TTTATTATATTATTTACAT
1 TTTATTATATTATTTACAT
**
8510181 TTTATTATA-TATTTTGAT
1 TTTATTATATTATTTACAT
* *
8510199 TTATACATTTTATTATATATCAT
1 TT-T--ATTATATTATTTA-CAT
*
8510222 TTTATTATATATATATTA-TT
1 TTTATTATAT-TAT-TTACAT
*
8510242 TTTATTCTATTAT
1 TTTATTATATTAT
8510255 ACATTATATA
Statistics
Matches: 57, Mismatches: 10, Indels: 14
0.70 0.12 0.17
Matches are distributed among these distances:
18 9 0.16
19 13 0.23
20 16 0.28
21 8 0.14
22 7 0.12
23 4 0.07
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.63
Consensus pattern (19 bp):
TTTATTATATTATTTACAT
Found at i:8510188 original size:14 final size:14
Alignment explanation
Indices: 8510169--8510232 Score: 80
Period size: 14 Copynumber: 4.6 Consensus size: 14
8510159 TTGTTTATTA
*
8510169 TATTATTTACATTT
1 TATTATATACATTT
8510183 TATTATAT--ATTT
1 TATTATATACATTT
8510195 TGATT-TATACATTT
1 T-ATTATATACATTT
8510209 TATTATATATCATTT
1 TATTATATA-CATTT
8510224 TATTATATA
1 TATTATATA
8510233 TATATTATTT
Statistics
Matches: 44, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
12 8 0.18
13 6 0.14
14 16 0.36
15 14 0.32
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.61
Consensus pattern (14 bp):
TATTATATACATTT
Found at i:8510235 original size:17 final size:15
Alignment explanation
Indices: 8510169--8510233 Score: 77
Period size: 15 Copynumber: 4.7 Consensus size: 15
8510159 TTGTTTATTA
*
8510169 TATTATTTA-CATTT
1 TATTATATATCATTT
8510183 TATTATATAT--TTT
1 TATTATATATCATTT
*
8510196 GATT-TATA-CATTT
1 TATTATATATCATTT
8510209 TATTATATATCATTT
1 TATTATATATCATTT
8510224 TATTATATAT
1 TATTATATAT
8510234 ATATTATTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
12 4 0.09
13 12 0.28
14 12 0.28
15 15 0.35
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.62
Consensus pattern (15 bp):
TATTATATATCATTT
Found at i:8510254 original size:25 final size:24
Alignment explanation
Indices: 8510222--8510296 Score: 71
Period size: 29 Copynumber: 2.9 Consensus size: 24
8510212 TATATATCAT
8510222 TTTATTATATATATATTATTTTTA
1 TTTATTATATATATATTATTTTTA
8510246 TTCTATTATACATTATATAATTATTTATTA
1 TT-TATTAT--A-TATAT-ATTATTT-TTA
* *
8510276 TTTATTAT-TATGTATAATTTT
1 TTTATTATATATATATTATTTT
8510297 AAAAATTTGT
Statistics
Matches: 43, Mismatches: 2, Indels: 13
0.74 0.03 0.22
Matches are distributed among these distances:
23 1 0.02
24 8 0.19
25 10 0.23
27 1 0.02
28 5 0.12
29 13 0.30
30 5 0.12
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (24 bp):
TTTATTATATATATATTATTTTTA
Found at i:8510295 original size:17 final size:17
Alignment explanation
Indices: 8510208--8510295 Score: 61
Period size: 17 Copynumber: 4.9 Consensus size: 17
8510198 TTTATACATT
*
8510208 TTATTATATATCATTTTA
1 TTATTATATAT-AATTTA
*
8510226 TTATATATATATTATTT-
1 TTAT-TATATATAATTTA
*
8510243 TTATTCTATTATACATTATA
1 TTATTATA-TATA-ATT-TA
* * *
8510263 TAATTATTTATTATTTA
1 TTATTATATATAATTTA
*
8510280 TTATTATGTATAATTT
1 TTATTATATATAATTT
8510296 TAAAAATTTG
Statistics
Matches: 54, Mismatches: 11, Indels: 11
0.71 0.14 0.14
Matches are distributed among these distances:
16 3 0.06
17 22 0.41
18 13 0.24
19 11 0.20
20 5 0.09
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.61
Consensus pattern (17 bp):
TTATTATATATAATTTA
Found at i:8510353 original size:22 final size:22
Alignment explanation
Indices: 8510295--8510357 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
8510285 ATGTATAATT
* *
8510295 TTAAAAATTT-GTAAATTATTA
1 TTAAATATTTAGTATATTATTA
* *
8510316 TTAAATA-ATACATATATTATTA
1 TTAAATATTTA-GTATATTATTA
8510338 TTAAATATTTAGTATATTAT
1 TTAAATATTTAGTATATTAT
8510358 GTAATATTCT
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
20 1 0.03
21 6 0.18
22 24 0.73
23 2 0.06
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.49
Consensus pattern (22 bp):
TTAAATATTTAGTATATTATTA
Found at i:8513953 original size:28 final size:27
Alignment explanation
Indices: 8513918--8513982 Score: 71
Period size: 28 Copynumber: 2.4 Consensus size: 27
8513908 CATCAGAATA
8513918 CAGTCAAATACAGG-CTGGGCCTGAGCC
1 CAGTCAAATAC-GGTCTGGGCCTGAGCC
*
8513945 CAGTACAAACT-CGGTCTGGGCCTTAGCC
1 CAGT-CAAA-TACGGTCTGGGCCTGAGCC
*
8513973 CAATCAAATA
1 CAGTCAAATA
8513983 TAGTTTCAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
26 1 0.03
27 10 0.31
28 20 0.62
29 1 0.03
ACGTcount: A:0.29, C:0.29, G:0.23, T:0.18
Consensus pattern (27 bp):
CAGTCAAATACGGTCTGGGCCTGAGCC
Found at i:8525983 original size:19 final size:21
Alignment explanation
Indices: 8525945--8525990 Score: 60
Period size: 19 Copynumber: 2.3 Consensus size: 21
8525935 AAATTATATG
*
8525945 AAAAAGATTAGAATAAAAAAT
1 AAAAAGAGTAGAATAAAAAAT
8525966 AAAAAGAGTA-AA-AAAAAAT
1 AAAAAGAGTAGAATAAAAAAT
*
8525985 ACAAAG
1 AAAAAG
8525991 GTTTAAAACA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 12 0.52
20 2 0.09
21 9 0.39
ACGTcount: A:0.74, C:0.02, G:0.11, T:0.13
Consensus pattern (21 bp):
AAAAAGAGTAGAATAAAAAAT
Found at i:8526162 original size:19 final size:20
Alignment explanation
Indices: 8526123--8526163 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
8526113 TAAAATAATT
*
8526123 AATATGCAAAATGATTTTAA
1 AATATACAAAATGATTTTAA
8526143 AATATACAAAATGA-TTTAA
1 AATATACAAAATGATTTTAA
8526162 AA
1 AA
8526164 CAATTAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.56, C:0.05, G:0.07, T:0.32
Consensus pattern (20 bp):
AATATACAAAATGATTTTAA
Found at i:8527970 original size:16 final size:17
Alignment explanation
Indices: 8527949--8528003 Score: 62
Period size: 16 Copynumber: 3.4 Consensus size: 17
8527939 TTTGGTTGGC
8527949 TGTAATAGAATAGGA-T
1 TGTAATAGAATAGGAGT
*
8527965 TGTAATTGAATA-GAGT
1 TGTAATAGAATAGGAGT
* *
8527981 TGTAATGGAATA-GAGC
1 TGTAATAGAATAGGAGT
8527997 TGTAATA
1 TGTAATA
8528004 AGTAATTCAA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
15 2 0.06
16 32 0.94
ACGTcount: A:0.40, C:0.02, G:0.25, T:0.33
Consensus pattern (17 bp):
TGTAATAGAATAGGAGT
Found at i:8528177 original size:22 final size:24
Alignment explanation
Indices: 8528158--8528203 Score: 69
Period size: 22 Copynumber: 2.0 Consensus size: 24
8528148 GATGAATATT
8528158 ATTATTATT-AAAT-TTTAATAAG
1 ATTATTATTGAAATATTTAATAAG
8528180 ATTATTATTGAAATAATTTAATAA
1 ATTATTATTGAAAT-ATTTAATAA
8528204 AATAATAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 9 0.43
23 4 0.19
25 8 0.38
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (24 bp):
ATTATTATTGAAATATTTAATAAG
Found at i:8528896 original size:40 final size:40
Alignment explanation
Indices: 8528834--8528942 Score: 173
Period size: 40 Copynumber: 2.7 Consensus size: 40
8528824 CTTAAGTATA
*
8528834 TCTGTTAATACATACTTTATCCGGTTAAATTATACAGTTT
1 TCTGTTAATACATACTTCATCCGGTTAAATTATACAGTTT
* *
8528874 TTTGTTAATACATACTTCATCCGGATAAATTATACAGTTT
1 TCTGTTAATACATACTTCATCCGGTTAAATTATACAGTTT
*
8528914 TCTATTAATACATACTTCATCCGGATTAA
1 TCTGTTAATACATACTTCATCCGG-TTAA
8528943 TACATACTTC
Statistics
Matches: 62, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
40 59 0.95
41 3 0.05
ACGTcount: A:0.32, C:0.17, G:0.09, T:0.42
Consensus pattern (40 bp):
TCTGTTAATACATACTTCATCCGGTTAAATTATACAGTTT
Found at i:8528941 original size:21 final size:21
Alignment explanation
Indices: 8528917--8528960 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
8528907 ACAGTTTTCT
8528917 ATTAATACATACTTCATCCGG
1 ATTAATACATACTTCATCCGG
8528938 ATTAATACATACTTCATCCGG
1 ATTAATACATACTTCATCCGG
8528959 AT
1 AT
8528961 AAATTATACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.34, C:0.23, G:0.09, T:0.34
Consensus pattern (21 bp):
ATTAATACATACTTCATCCGG
Found at i:8528953 original size:61 final size:61
Alignment explanation
Indices: 8528878--8528995 Score: 227
Period size: 61 Copynumber: 1.9 Consensus size: 61
8528868 CAGTTTTTTG
8528878 TTAATACATACTTCATCCGGATAAATTATACAGTTTTCTATTAATACATACTTCATCCGGA
1 TTAATACATACTTCATCCGGATAAATTATACAGTTTTCTATTAATACATACTTCATCCGGA
*
8528939 TTAATACATACTTCATCCGGATAAATTATACAGTTTTCTGTTAATACATACTTCATC
1 TTAATACATACTTCATCCGGATAAATTATACAGTTTTCTATTAATACATACTTCATC
8528996 AGATTTTCTG
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 56 1.00
ACGTcount: A:0.34, C:0.19, G:0.08, T:0.39
Consensus pattern (61 bp):
TTAATACATACTTCATCCGGATAAATTATACAGTTTTCTATTAATACATACTTCATCCGGA
Found at i:8530906 original size:15 final size:16
Alignment explanation
Indices: 8530881--8530910 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
8530871 TTCAAGTTAA
8530881 GATGATGAAGGAAGAT
1 GATGATGAAGGAAGAT
8530897 GATG-TGAAGGAAGA
1 GATGATGAAGGAAGA
8530911 AGAAGCAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.43, C:0.00, G:0.40, T:0.17
Consensus pattern (16 bp):
GATGATGAAGGAAGAT
Found at i:8533870 original size:25 final size:26
Alignment explanation
Indices: 8533842--8533904 Score: 92
Period size: 26 Copynumber: 2.5 Consensus size: 26
8533832 ATTTTAAACC
* *
8533842 ATTATTCATTTTAAAAT-TTATATAT
1 ATTATTTATTTTAAAATATTATACAT
*
8533867 ATTATTTATTTTAAACTATTATACAT
1 ATTATTTATTTTAAAATATTATACAT
8533893 ATTATTTATTTT
1 ATTATTTATTTT
8533905 GAAGTTTTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
25 15 0.44
26 19 0.56
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.59
Consensus pattern (26 bp):
ATTATTTATTTTAAAATATTATACAT
Done.