Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 34 of 255
Found at i:8839929 original size:19 final size:19
Alignment explanation
Indices: 8839896--8839936 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
8839886 TTAATGTTCA
*
8839896 TTAAATAAACTCT-AAAAT
1 TTAAATAAACACTAAAAAT
8839914 TTAAATTAAACACTAAAAAT
1 TTAAA-TAAACACTAAAAAT
8839934 TTA
1 TTA
8839937 GCAATGTTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 5 0.25
19 7 0.35
20 8 0.40
ACGTcount: A:0.56, C:0.10, G:0.00, T:0.34
Consensus pattern (19 bp):
TTAAATAAACACTAAAAAT
Found at i:8843805 original size:25 final size:26
Alignment explanation
Indices: 8843777--8843830 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
8843767 AAAATTAACT
* *
8843777 AAATTATAAATCT-ATAATTTTTTAA
1 AAATTACAAATCTGATAATTTTTAAA
* *
8843802 AAATTACAAATTTGTTAATTTTTAAA
1 AAATTACAAATCTGATAATTTTTAAA
8843828 AAA
1 AAA
8843831 ATGTAAAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
25 11 0.46
26 13 0.54
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (26 bp):
AAATTACAAATCTGATAATTTTTAAA
Found at i:8843855 original size:16 final size:18
Alignment explanation
Indices: 8843834--8843871 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
8843824 TAAAAAAATG
*
8843834 TAAAAAAAT-AAAATTAT
1 TAAAAACATAAAAATTAT
8843851 TAAAAACTATAAAAATTAT
1 TAAAAAC-ATAAAAATTAT
8843870 TA
1 TA
8843872 GAAATTGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 2 0.11
19 10 0.56
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.32
Consensus pattern (18 bp):
TAAAAACATAAAAATTAT
Found at i:8844619 original size:29 final size:28
Alignment explanation
Indices: 8844573--8844630 Score: 73
Period size: 31 Copynumber: 2.0 Consensus size: 28
8844563 ACGGTGAGAA
*
8844573 ATTTTTTTTTATAATTTTTAGTAGTATATAT
1 ATTTTTTCTTAT-ATTTTTA-TA-TATATAT
8844604 ATTTTTTCTTAT-TTTTTATATATATAT
1 ATTTTTTCTTATATTTTTATATATATAT
8844631 TTAAAACATT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
27 7 0.27
28 2 0.08
29 6 0.23
31 11 0.42
ACGTcount: A:0.28, C:0.02, G:0.03, T:0.67
Consensus pattern (28 bp):
ATTTTTTCTTATATTTTTATATATATAT
Found at i:8851543 original size:91 final size:93
Alignment explanation
Indices: 8851341--8851547 Score: 238
Period size: 92 Copynumber: 2.2 Consensus size: 93
8851331 TATGCAGCAG
* * *
8851341 AGTTGACGTATATAGAGTACAGTGCATTGCAGTAAACCGCTGTACAGATATGTTGCAGTTAAAAC
1 AGTTGACGTATATACAGTACAGTGCATTGCAGTAAACCGCAGTACAGATATGTTACAGTTAAAAC
* * * *
8851406 TGCCAGATAAAATAGTAAAATGCAACAA
66 TACCAAATAAAATAATAAAACGCAACAA
* * * ** * *
8851434 AGTTGATGCATATACAGTACAGTGCATTGCGGTAAATTG-AGTATAGATATGTTACAGTTAAACC
1 AGTTGACGTATATACAGTACAGTGCATTGCAGTAAACCGCAGTACAGATATGTTACAGTTAAAAC
* * *
8851498 TACCAAATCAGATAATAATACG-AACAA
66 TACCAAATAAAATAATAAAACGCAACAA
*
8851525 AGTTGACGTTTATACAGTACAGT
1 AGTTGACGTATATACAGTACAGT
8851548 CTTCCTTCTC
Statistics
Matches: 94, Mismatches: 20, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
91 25 0.27
92 36 0.38
93 33 0.35
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.27
Consensus pattern (93 bp):
AGTTGACGTATATACAGTACAGTGCATTGCAGTAAACCGCAGTACAGATATGTTACAGTTAAAAC
TACCAAATAAAATAATAAAACGCAACAA
Found at i:8855811 original size:21 final size:21
Alignment explanation
Indices: 8855787--8855850 Score: 60
Period size: 21 Copynumber: 3.1 Consensus size: 21
8855777 ACACGGGCGC
8855787 GTGCCTTAGTCACACGACCGT
1 GTGCCTTAGTCACACGACCGT
* * **
8855808 GTGCCTCT--TTATACGAGTGT
1 GTGCCT-TAGTCACACGACCGT
*
8855828 GTGCCTCAGTCACACGACCGT
1 GTGCCTTAGTCACACGACCGT
8855849 GT
1 GT
8855851 ACCCCTCTTC
Statistics
Matches: 31, Mismatches: 9, Indels: 6
0.67 0.20 0.13
Matches are distributed among these distances:
20 14 0.45
21 16 0.52
22 1 0.03
ACGTcount: A:0.17, C:0.30, G:0.25, T:0.28
Consensus pattern (21 bp):
GTGCCTTAGTCACACGACCGT
Found at i:8856806 original size:13 final size:13
Alignment explanation
Indices: 8856788--8856813 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8856778 TAAATGATAA
8856788 TCAGTTTATATTT
1 TCAGTTTATATTT
8856801 TCAGTTTATATTT
1 TCAGTTTATATTT
8856814 GGTTAATTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.08, G:0.08, T:0.62
Consensus pattern (13 bp):
TCAGTTTATATTT
Found at i:8858747 original size:77 final size:77
Alignment explanation
Indices: 8858649--8858805 Score: 237
Period size: 77 Copynumber: 2.0 Consensus size: 77
8858639 TTACCTAACA
**
8858649 CACTTTATATATACAAAGGTGTAACATATATGTCATATTAAAGGACCATCAACA-GTCCAGTTGA
1 CACTTTATATATACAAAGGTGTAACATATATGTCATATTAAAGGACCATCAA-ATGTCCAGTCAA
8858713 GTGACAATAAAAT
65 GTGACAATAAAAT
* * *
8858726 CACTTTATATATGA-AACGGTGTAACATATATGTCATATTAAAGGTCCATCAAATGTCTAGTCAA
1 CACTTTATATAT-ACAAAGGTGTAACATATATGTCATATTAAAGGACCATCAAATGTCCAGTCAA
8858790 GTGACAATAAAAT
65 GTGACAATAAAAT
8858803 CAC
1 CAC
8858806 ACATTTATTC
Statistics
Matches: 73, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
76 1 0.01
77 71 0.97
78 1 0.01
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.29
Consensus pattern (77 bp):
CACTTTATATATACAAAGGTGTAACATATATGTCATATTAAAGGACCATCAAATGTCCAGTCAAG
TGACAATAAAAT
Found at i:8860651 original size:27 final size:27
Alignment explanation
Indices: 8860633--8860872 Score: 356
Period size: 27 Copynumber: 8.9 Consensus size: 27
8860623 CTCGACTTGT
* *
8860633 AGAATTACCGTTTTACCCTCAATTTAT
1 AGAATTACCGTTTTACCCTCGATTTAC
8860660 AGAATTACCGTTTTACCCTCGATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
*
8860687 AGAATTACTGTTTTACCCTCGATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
*
8860714 AGAATTATCGTTTTACCCTCGATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
* **
8860741 AAAATTACTATTTTACCCTCGATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
*
8860768 AGAATTATCGTTTTACCCTCGATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
* *
8860795 AAAATTATCGTTTTACCC-CTGATTTAC
1 AGAATTACCGTTTTACCCTC-GATTTAC
*
8860822 AGAATTATCGTTTTACCCTCGATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
*
8860849 AGAATTACCATTTTACCCTCGATT
1 AGAATTACCGTTTTACCCTCGATT
8860873 GTGAAATTAC
Statistics
Matches: 194, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
26 1 0.01
27 192 0.99
28 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (27 bp):
AGAATTACCGTTTTACCCTCGATTTAC
Found at i:8860961 original size:27 final size:27
Alignment explanation
Indices: 8860904--8861028 Score: 151
Period size: 27 Copynumber: 4.6 Consensus size: 27
8860894 TGTAGGGTAG
* *
8860904 AATTACCAAAATACCCCCTAGTTTGTAA
1 AATTACCAAAATA-CCCCTAATTTATAA
* * *
8860932 AATTACCAAAATACCACTAGTTTATGA
1 AATTACCAAAATACCCCTAATTTATAA
* * *
8860959 AATTACCGAAATACCCTTAATTTGTAA
1 AATTACCAAAATACCCCTAATTTATAA
*
8860986 AATTACCAAAATACCCCTAATTTACAA
1 AATTACCAAAATACCCCTAATTTATAA
*
8861013 AATTACAAAAATACCC
1 AATTACCAAAATACCC
8861029 TTGACTTTCT
Statistics
Matches: 83, Mismatches: 14, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 70 0.84
28 13 0.16
ACGTcount: A:0.45, C:0.22, G:0.05, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAATTTATAA
Found at i:8861000 original size:54 final size:54
Alignment explanation
Indices: 8860904--8861106 Score: 192
Period size: 54 Copynumber: 3.7 Consensus size: 54
8860894 TGTAGGGTAG
* **
8860904 AATTACCAAAATACCCCCTAGTTTGTAAAATTACCAAAATACCACTAGTTTATGA
1 AATTACCAAAATA-CCCTTAGTTTGTAAAATTACCAAAATACCACTAGTTTACAA
* * * *
8860959 AATTACCGAAATACCCTTAATTTGTAAAATTACCAAAATACCCCTAATTTACAA
1 AATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCACTAGTTTACAA
* * * * * * *
8861013 AATTACAAAAATACCCTTGACTTTCTAAAAATTA-TAGAAGTACCATTGGTTTACAA
1 AATTACCAAAATACCCTT-AGTTTGT-AAAATTACCA-AAATACCACTAGTTTACAA
** * * *
8861069 AATTACTGAAATACCCTTGGTTTGTAGATTTACCAAAA
1 AATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
8861107 CACCCTTGTA
Statistics
Matches: 118, Mismatches: 26, Indels: 9
0.77 0.17 0.06
Matches are distributed among these distances:
54 58 0.49
55 23 0.19
56 37 0.31
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (54 bp):
AATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCACTAGTTTACAA
Found at i:8861083 original size:27 final size:27
Alignment explanation
Indices: 8861040--8861091 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
8861030 TGACTTTCTA
*
8861040 AAAATTATAGAAGTACCATTGGTTTAC
1 AAAATTATAGAAATACCATTGGTTTAC
*
8861067 AAAATTACT-GAAATACCCTTGGTTT
1 AAAATTA-TAGAAATACCATTGGTTT
8861092 GTAGATTTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.35
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTAC
Found at i:8862028 original size:25 final size:24
Alignment explanation
Indices: 8861994--8862090 Score: 97
Period size: 25 Copynumber: 3.9 Consensus size: 24
8861984 GGAGGAAGTG
8861994 CTAAAAGGGCTATGCCCCAGTTTA
1 CTAAAAGGGCTATGCCCCAGTTTA
* *
8862018 CCTAAAAGGGCTTTGCCCCGGTTTA
1 -CTAAAAGGGCTATGCCCCAGTTTA
* *
8862043 TCAAAAAGGGCTTTGCCCCAG-TTA
1 -CTAAAAGGGCTATGCCCCAGTTTA
* *
8862067 TTAAAAGAGGCTAGGCCTCCAGTT
1 CTAAAAG-GGCTATGCC-CCAGTT
8862091 ATATGATAAA
Statistics
Matches: 60, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
23 5 0.08
24 10 0.17
25 44 0.73
26 1 0.02
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.26
Consensus pattern (24 bp):
CTAAAAGGGCTATGCCCCAGTTTA
Found at i:8864917 original size:39 final size:39
Alignment explanation
Indices: 8864863--8864966 Score: 190
Period size: 39 Copynumber: 2.7 Consensus size: 39
8864853 CCAACACAAG
*
8864863 TGCCTTCGGGACTTAGCCTGGATATAACACCAGCACGAA
1 TGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
8864902 TGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
1 TGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
*
8864941 TGCCTTCGGGAATTAGCCCGGATATA
1 TGCCTTCGGGACTTAGCCCGGATATA
8864967 TATCTCACAC
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 63 1.00
ACGTcount: A:0.27, C:0.28, G:0.24, T:0.21
Consensus pattern (39 bp):
TGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
Found at i:8869822 original size:37 final size:38
Alignment explanation
Indices: 8869771--8869848 Score: 92
Period size: 37 Copynumber: 2.1 Consensus size: 38
8869761 GTGATCGATA
*
8869771 TTGTTGTGATTAGCCA-AATG-TATTGGCTTATAATG-AT
1 TTGTTGTGATTAGCCATGA-GATA-TGGCTTATAATGAAT
8869808 TTGTTGT-ATGTAGCCATGAGATATGGCTTATAATGAAT
1 TTGTTGTGAT-TAGCCATGAGATATGGCTTATAATGAAT
8869846 TTG
1 TTG
8869849 GCTTGGAAGC
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
36 2 0.06
37 26 0.72
38 8 0.22
ACGTcount: A:0.27, C:0.08, G:0.23, T:0.42
Consensus pattern (38 bp):
TTGTTGTGATTAGCCATGAGATATGGCTTATAATGAAT
Found at i:8870078 original size:27 final size:27
Alignment explanation
Indices: 8870047--8870116 Score: 95
Period size: 30 Copynumber: 2.5 Consensus size: 27
8870037 GATGTTTATT
8870047 TATAAGTTAGTAAACATAGTATAATGG
1 TATAAGTTAGTAAACATAGTATAATGG
*
8870074 TATAAGTGAGTAATAAACATAGTATAATGG
1 TATAAGT---TAGTAAACATAGTATAATGG
*
8870104 TATAAGTGAGTAA
1 TATAAGTTAGTAA
8870117 TAAGATGACA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
27 11 0.30
30 26 0.70
ACGTcount: A:0.46, C:0.03, G:0.20, T:0.31
Consensus pattern (27 bp):
TATAAGTTAGTAAACATAGTATAATGG
Found at i:8870093 original size:30 final size:30
Alignment explanation
Indices: 8870057--8870119 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
8870047 TATAAGTTAG
8870057 TAAACATAGTATAATGGTATAAGTGAGTAA
1 TAAACATAGTATAATGGTATAAGTGAGTAA
8870087 TAAACATAGTATAATGGTATAAGTGAGTAA
1 TAAACATAGTATAATGGTATAAGTGAGTAA
8870117 TAA
1 TAA
8870120 GATGACAAGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.48, C:0.03, G:0.19, T:0.30
Consensus pattern (30 bp):
TAAACATAGTATAATGGTATAAGTGAGTAA
Found at i:8872640 original size:4 final size:4
Alignment explanation
Indices: 8872631--8872655 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
8872621 TCATTCCATC
8872631 TTCT TTCT TTCT TTCT TTCT TTCT T
1 TTCT TTCT TTCT TTCT TTCT TTCT T
8872656 GTATGATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TTCT
Found at i:8873053 original size:11 final size:11
Alignment explanation
Indices: 8873037--8873061 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
8873027 AAAAATTGTG
8873037 AAAATAAAAAT
1 AAAATAAAAAT
8873048 AAAATAAAAAT
1 AAAATAAAAAT
8873059 AAA
1 AAA
8873062 TAACACAGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:8877486 original size:11 final size:11
Alignment explanation
Indices: 8877470--8877494 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
8877460 CCAATTTGTG
8877470 AAAATAAAAAT
1 AAAATAAAAAT
8877481 AAAATAAAAAT
1 AAAATAAAAAT
8877492 AAA
1 AAA
8877495 GAACACAGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:8880946 original size:3 final size:3
Alignment explanation
Indices: 8880938--8880968 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
8880928 ATTAATTAGT
8880938 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
8880969 ACTTTCTCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:8881585 original size:14 final size:15
Alignment explanation
Indices: 8881557--8881585 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8881547 ATTTTGCTTA
8881557 TTTATTTACTATATT
1 TTTATTTACTATATT
8881572 TTTATTTA-TATATT
1 TTTATTTACTATATT
8881586 GTAGCGACGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (15 bp):
TTTATTTACTATATT
Found at i:8882677 original size:44 final size:44
Alignment explanation
Indices: 8882592--8882677 Score: 102
Period size: 44 Copynumber: 2.0 Consensus size: 44
8882582 TATAGCTAAG
* * **
8882592 AATATTGAAAATATATACATAAGATGACATAAAATTTAAATAAC
1 AATATTGAAAATATATACATAACATAACATAAAATAAAAATAAC
* *
8882636 AATATTGAAAA-ATATATATATACATAACATAGAATAAAAATA
1 AATATTGAAAATATATACATA-ACATAACATAAAATAAAAATA
8882678 TATATATGTA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
43 8 0.23
44 27 0.77
ACGTcount: A:0.59, C:0.06, G:0.06, T:0.29
Consensus pattern (44 bp):
AATATTGAAAATATATACATAACATAACATAAAATAAAAATAAC
Found at i:8884986 original size:132 final size:129
Alignment explanation
Indices: 8884781--8885018 Score: 286
Period size: 132 Copynumber: 1.8 Consensus size: 129
8884771 TTTAGGAAAT
* *
8884781 TCGAGAAATCGTACCCTAACTTACGGGTCTCGATTTTCTCGTTAAATCTAAATAGCCGAATAGCC
1 TCGAGAAATCGTACCCTAACTTACGGGTCTCGATTTTCTCATTAAATCTAAATAACCGAATAGCC
* *
8884846 CTTAAAATTTCAAAATACATGA-ATTT-TAAAA-AAAAATAAAAGTAATATTCCATATTTATAAA
66 CTTAAAA-TT-AAAACACATGAGATTTCAAAAATAAAAATAAAAGTAATATTCCATATTTATAAA
8884908 C
129 C
* * ** *
8884909 TCGAGAAAGTCGTGCCCTAACTTATGGGGTCTCGATTCTTTCTCATTGGATCTAAATAATCGAAT
1 TCGAGAAA-TCGTACCCTAACTTA-CGGGTCTCGA-T-TTTCTCATTAAATCTAAATAACCGAAT
* *
8884974 A-TCCTTCTAAATTAAAACACATGAGATTTCAAAAATAAAAATAAA
62 AGCCCTT-AAAATTAAAACACATGAGATTTCAAAAATAAAAATAAA
8885019 GACAAGTTTG
Statistics
Matches: 91, Mismatches: 11, Indels: 11
0.81 0.10 0.10
Matches are distributed among these distances:
128 8 0.09
129 14 0.15
130 19 0.21
131 11 0.12
132 30 0.33
133 9 0.10
ACGTcount: A:0.40, C:0.17, G:0.12, T:0.31
Consensus pattern (129 bp):
TCGAGAAATCGTACCCTAACTTACGGGTCTCGATTTTCTCATTAAATCTAAATAACCGAATAGCC
CTTAAAATTAAAACACATGAGATTTCAAAAATAAAAATAAAAGTAATATTCCATATTTATAAAC
Found at i:8885436 original size:13 final size:13
Alignment explanation
Indices: 8885418--8885443 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8885408 TCCCATTTTT
8885418 CGTTTTTTTAAAA
1 CGTTTTTTTAAAA
8885431 CGTTTTTTTAAAA
1 CGTTTTTTTAAAA
8885444 GTCGGCCTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.08, T:0.54
Consensus pattern (13 bp):
CGTTTTTTTAAAA
Found at i:8887801 original size:56 final size:56
Alignment explanation
Indices: 8887715--8887830 Score: 232
Period size: 56 Copynumber: 2.1 Consensus size: 56
8887705 TATAATGGTC
8887715 GTATGGAGGACTCTATCAATAACTTTACTTCTCATATCAGAACTTGGAACAGTGAT
1 GTATGGAGGACTCTATCAATAACTTTACTTCTCATATCAGAACTTGGAACAGTGAT
8887771 GTATGGAGGACTCTATCAATAACTTTACTTCTCATATCAGAACTTGGAACAGTGAT
1 GTATGGAGGACTCTATCAATAACTTTACTTCTCATATCAGAACTTGGAACAGTGAT
8887827 GTAT
1 GTAT
8887831 ATGGGCATAT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 60 1.00
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (56 bp):
GTATGGAGGACTCTATCAATAACTTTACTTCTCATATCAGAACTTGGAACAGTGAT
Found at i:8889782 original size:21 final size:21
Alignment explanation
Indices: 8889758--8889817 Score: 84
Period size: 21 Copynumber: 2.9 Consensus size: 21
8889748 GTCTTGGGGT
* *
8889758 CACACGGGTGTGTGCCTTAGC
1 CACACGGTTGTGTGCCTCAGC
*
8889779 CACACGGTTGTATGCCTCAGC
1 CACACGGTTGTGTGCCTCAGC
*
8889800 TACACGGTTGTGTGCCTC
1 CACACGGTTGTGTGCCTC
8889818 CTTTCACACG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.15, C:0.30, G:0.28, T:0.27
Consensus pattern (21 bp):
CACACGGTTGTGTGCCTCAGC
Found at i:8893047 original size:5 final size:6
Alignment explanation
Indices: 8893034--8893087 Score: 81
Period size: 6 Copynumber: 8.5 Consensus size: 6
8893024 ATAATGTAAT
8893034 AAATAA AAATAA AAATCTAA AAATAA AAATAA AAATAA AAATAA AAATATA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAATAA AAATA-A
8893085 AAA
1 AAA
8893088 AATATAATTT
Statistics
Matches: 45, Mismatches: 0, Indels: 5
0.90 0.00 0.10
Matches are distributed among these distances:
6 35 0.78
7 4 0.09
8 6 0.13
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.19
Consensus pattern (6 bp):
AAATAA
Found at i:8893063 original size:26 final size:26
Alignment explanation
Indices: 8893034--8893088 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 26
8893024 ATAATGTAAT
*
8893034 AAATAAAAATAAAAATCTAAAAATAA
1 AAATAAAAATAAAAATATAAAAATAA
8893060 AAATAAAAATAAAAATA-AAAATATAA
1 AAATAAAAATAAAAATATAAAA-ATAA
8893086 AAA
1 AAA
8893089 ATATAATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 4 0.15
26 23 0.85
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.18
Consensus pattern (26 bp):
AAATAAAAATAAAAATATAAAAATAA
Found at i:8893120 original size:9 final size:9
Alignment explanation
Indices: 8893106--8893182 Score: 118
Period size: 9 Copynumber: 8.6 Consensus size: 9
8893096 TTTATACAAA
8893106 TAATTCGGT
1 TAATTCGGT
*
8893115 TAATTCAGT
1 TAATTCGGT
*
8893124 TAATTCGGG
1 TAATTCGGT
*
8893133 TAATTCGAT
1 TAATTCGGT
8893142 TAATTCGGT
1 TAATTCGGT
*
8893151 TAATTCGAT
1 TAATTCGGT
8893160 TAATTCGGT
1 TAATTCGGT
8893169 TAATTCGGT
1 TAATTCGGT
8893178 TAATT
1 TAATT
8893183 TTATACTTAT
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 60 1.00
ACGTcount: A:0.27, C:0.10, G:0.18, T:0.44
Consensus pattern (9 bp):
TAATTCGGT
Found at i:8899826 original size:19 final size:19
Alignment explanation
Indices: 8899802--8899864 Score: 62
Period size: 19 Copynumber: 3.4 Consensus size: 19
8899792 TTCTTTTGCA
8899802 CGTACGGAGTGC-GTGGC-GG
1 CGTACGGAG-GCTGT-GCTGG
8899821 CGTACGGAGGCTGTGCTGG
1 CGTACGGAGGCTGTGCTGG
*
8899840 CGTACGG-GGGT-TGCTGG
1 CGTACGGAGGCTGTGCTGG
8899857 TCGTACGG
1 -CGTACGG
8899865 GGCGAGGGCT
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
17 6 0.15
18 14 0.35
19 20 0.50
ACGTcount: A:0.10, C:0.21, G:0.49, T:0.21
Consensus pattern (19 bp):
CGTACGGAGGCTGTGCTGG
Found at i:8899856 original size:17 final size:18
Alignment explanation
Indices: 8899819--8899867 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
8899809 AGTGCGTGGC
8899819 GGCGTACGGAGGCTGTGCT
1 GGCGTACGG-GGCTGTGCT
*
8899838 GGCGTACGGGGGT-TGCT
1 GGCGTACGGGGCTGTGCT
8899855 GGTCGTACGGGGC
1 GG-CGTACGGGGC
8899868 GAGGGCTGGG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 6 0.22
18 12 0.44
19 9 0.33
ACGTcount: A:0.08, C:0.20, G:0.51, T:0.20
Consensus pattern (18 bp):
GGCGTACGGGGCTGTGCT
Found at i:8910493 original size:25 final size:21
Alignment explanation
Indices: 8910459--8910510 Score: 61
Period size: 21 Copynumber: 2.3 Consensus size: 21
8910449 TTATTATAGT
8910459 AATTTA-GATTAATAGGAATTATCA
1 AATTTATGATT-A-AGG-ATTAT-A
8910483 AATTTATGATTAAGGATTATA
1 AATTTATGATTAAGGATTATA
8910504 AATTTAT
1 AATTTAT
8910511 TTAATTCCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
21 8 0.30
22 5 0.19
23 3 0.11
24 7 0.26
25 4 0.15
ACGTcount: A:0.44, C:0.02, G:0.12, T:0.42
Consensus pattern (21 bp):
AATTTATGATTAAGGATTATA
Found at i:8911195 original size:44 final size:43
Alignment explanation
Indices: 8911143--8911591 Score: 204
Period size: 44 Copynumber: 10.3 Consensus size: 43
8911133 CGGCCTGTTA
*
8911143 CCCTACTGCTTAGGGGGTTAAGGCTCACCGTATTCGATTTACT
1 CCCTACTGCTTAGGGGGTTAAGGCTCACCGTATTCGATCTACT
* * * * ** *
8911186 CCGCTACTGCTTAGGGAGATAA-GAT--CTGTAATTCGGCCTATT
1 CC-CTACTGCTTAGGGGGTTAAGGCTCACCGT-ATTCGATCTACT
* * * *
8911228 ACCTTACTGCTTAGGGGGTTAAGGCTCACCGTCTTTGATTTACT
1 -CCCTACTGCTTAGGGGGTTAAGGCTCACCGTATTCGATCTACT
* * * * * * ** *
8911272 CTGCTACTACTTAGGGAGATAA-GAT--CTGTAATTCGGCCTGCT
1 C-CCTACTGCTTAGGGGGTTAAGGCTCACCGT-ATTCGATCTACT
*
8911314 ACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTACTT
1 -CCCTACTGCTTAGGGGGTTAAGGCTCACCGTATTCGATCTAC-T
* * * * * * **
8911359 CGCTACTGCTTAGGGAGATAA-GAT--CTGTAATTC-AGCCTGTT
1 CCCTACTGCTTAGGGGGTTAAGGCTCACCGT-ATTCGA-TCTACT
* * *
8911400 AACCTACTGCTTAGGGGGTTAAGGCTCACTGTCTTCGATCTACATT
1 -CCCTACTGCTTAGGGGGTTAAGGCTCACCGTATTCGATCTAC--T
* * *
8911446 ACCCTACTGCTTAGGGGGTCAAGGCACACCGTCTTCGATCTACT
1 -CCCTACTGCTTAGGGGGTTAAGGCTCACCGTATTCGATCTACT
* * * * * ** **
8911490 CCGCTACTGCTTAGAGAGATAA-GAT--CTGTAATTCGGCCTGTT
1 CC-CTACTGCTTAGGGGGTTAAGGCTCACCGT-ATTCGATCTACT
* ** * *
8911532 ACCCTACTGCTTAGGGGGTTAAGGCTTACTATCTTCGATCTGCT
1 -CCCTACTGCTTAGGGGGTTAAGGCTCACCGTATTCGATCTACT
8911576 CCGCTACTGCTTAGGG
1 CC-CTACTGCTTAGGG
8911592 AGATAAGATC
Statistics
Matches: 292, Mismatches: 85, Indels: 57
0.67 0.20 0.13
Matches are distributed among these distances:
41 14 0.05
42 91 0.31
43 27 0.09
44 105 0.36
45 15 0.05
46 40 0.14
ACGTcount: A:0.21, C:0.24, G:0.23, T:0.31
Consensus pattern (43 bp):
CCCTACTGCTTAGGGGGTTAAGGCTCACCGTATTCGATCTACT
Found at i:8911237 original size:42 final size:41
Alignment explanation
Indices: 8911189--8911415 Score: 111
Period size: 42 Copynumber: 5.3 Consensus size: 41
8911179 ATTTACTCCG
8911189 CTACTGCTTAGGGAGATAAGATCTGTAATTCGGCCTATTAC
1 CTACTGCTTAGGGAGATAAGATCTGTAATTCGGCCTATTAC
* * * * * * *** *
8911230 CTTACTGCTTAGGGGGTTAAGGCTCACCGT-CTTTGATTTACTCT-G
1 C-TACTGCTTAGGGAGATAA-GAT--CTGTAATTCGGCCTA-T-TAC
* **
8911275 CTACTACTTAGGGAGATAAGATCTGTAATTCGGCCTGCTACC
1 CTACTGCTTAGGGAGATAAGATCTGTAATTCGGCCTATTA-C
* * * * * **
8911317 CTACTGCTTAGGGGGTTAAGGCTCACCGT-CTTCGATCTACTT-C
1 CTACTGCTTAGGGAGATAA-GAT--CTGTAATTCGGCCTA-TTAC
* *
8911360 GCTACTGCTTAGGGAGATAAGATCTGTAATTCAGCCTGTTAAC
1 -CTACTGCTTAGGGAGATAAGATCTGTAATTCGGCCTATT-AC
8911403 CTACTGCTTAGGG
1 CTACTGCTTAGGG
8911416 GGTTAAGGCT
Statistics
Matches: 127, Mismatches: 42, Indels: 33
0.63 0.21 0.16
Matches are distributed among these distances:
40 1 0.01
41 9 0.07
42 54 0.43
43 10 0.08
44 43 0.34
45 9 0.07
46 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.23, T:0.32
Consensus pattern (41 bp):
CTACTGCTTAGGGAGATAAGATCTGTAATTCGGCCTATTAC
Found at i:8911268 original size:86 final size:86
Alignment explanation
Indices: 8911120--8911461 Score: 533
Period size: 86 Copynumber: 4.0 Consensus size: 86
8911110 ACAGCTAGAC
* *
8911120 AAGATCTGTAATTCGGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTATTCGATTTAC
1 AAGATCTGTAATTCGGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTAC
8911185 TCCGCTACTGCTTAGGGAGAT
66 TCCGCTACTGCTTAGGGAGAT
* * * *
8911206 AAGATCTGTAATTCGGCCTATTACCTTACTGCTTAGGGGGTTAAGGCTCACCGTCTTTGATTTAC
1 AAGATCTGTAATTCGGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTAC
* *
8911271 TCTGCTACTACTTAGGGAGAT
66 TCCGCTACTGCTTAGGGAGAT
*
8911292 AAGATCTGTAATTCGGCCTGCTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTAC
1 AAGATCTGTAATTCGGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTAC
*
8911357 TTCGCTACTGCTTAGGGAGAT
66 TCCGCTACTGCTTAGGGAGAT
* * *
8911378 AAGATCTGTAATTCAGCCTGTTAACCTACTGCTTAGGGGGTTAAGGCTCACTGTCTTCGATCTAC
1 AAGATCTGTAATTCGGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTAC
8911443 ATTACC-CTACTGCTTAGGG
66 --T-CCGCTACTGCTTAGGG
8911462 GGTCAAGGCA
Statistics
Matches: 234, Mismatches: 19, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
86 219 0.94
88 14 0.06
89 1 0.00
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.32
Consensus pattern (86 bp):
AAGATCTGTAATTCGGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTAC
TCCGCTACTGCTTAGGGAGAT
Found at i:8911470 original size:46 final size:45
Alignment explanation
Indices: 8911140--8911503 Score: 210
Period size: 44 Copynumber: 8.4 Consensus size: 45
8911130 ATTCGGCCTG
* *
8911140 TTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTATTCGATTTAC
1 TTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTAC
* * * * * **
8911185 -T-CCGCTACTGCTTAGGGAGATAA-GAT--CTGTAATTCGGCCTA-
1 TTACC-CTACTGCTTAGGGGGTTAAGGCTCACCGT-CTTCGATCTAC
* * *
8911226 TTACCTTACTGCTTAGGGGGTTAAGGCTCACCGTCTTTGATTTAC
1 TTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTAC
* * * * * * * ** *
8911271 -T-CTGCTACTACTTAGGGAGATAA-GAT--CTGTAATTCGGCCTGC
1 TTAC-CCTACTGCTTAGGGGGTTAAGGCTCACCGT-CTTCGATCTAC
8911313 -TACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTAC
1 TTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTAC
* * * * * * * *
8911357 TT-CGCTACTGCTTAGGGAGATAA-GAT--CTGTAATTC-AGCCT-G
1 TTACCCTACTGCTTAGGGGGTTAAGGCTCACCGT-CTTCGA-TCTAC
* *
8911398 TTAACCTACTGCTTAGGGGGTTAAGGCTCACTGTCTTCGATCTAC
1 TTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTAC
* *
8911443 ATTACCCTACTGCTTAGGGGGTCAAGGCACACCGTCTTCGATCTAC
1 -TTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTAC
8911489 -T-CCGCTACTGCTTAG
1 TTACC-CTACTGCTTAG
8911504 AGAGATAAGA
Statistics
Matches: 234, Mismatches: 60, Indels: 51
0.68 0.17 0.15
Matches are distributed among these distances:
41 12 0.05
42 68 0.29
43 20 0.09
44 81 0.35
45 12 0.05
46 41 0.18
ACGTcount: A:0.21, C:0.25, G:0.23, T:0.32
Consensus pattern (45 bp):
TTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTAC
Found at i:8911476 original size:132 final size:132
Alignment explanation
Indices: 8911313--8911572 Score: 448
Period size: 132 Copynumber: 2.0 Consensus size: 132
8911303 TTCGGCCTGC
* * * *
8911313 TACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTACTTCGCTACTGCTTAGGGAGAT
1 TACCCTACTGCTTAGGGGGTCAAGGCACACCGTCTTCGATCTACTCCGCTACTGCTTAGAGAGAT
*
8911378 AAGATCTGTAATTCAGCCTGTTAACCTACTGCTTAGGGGGTTAAGGCTCACTGTCTTCGATCTAC
66 AAGATCTGTAATTCAGCCTGTTAACCTACTGCTTAGGGGGTTAAGGCTCACTATCTTCGATCTAC
8911443 AT
131 AT
8911445 TACCCTACTGCTTAGGGGGTCAAGGCACACCGTCTTCGATCTACTCCGCTACTGCTTAGAGAGAT
1 TACCCTACTGCTTAGGGGGTCAAGGCACACCGTCTTCGATCTACTCCGCTACTGCTTAGAGAGAT
* * *
8911510 AAGATCTGTAATTCGGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTACTATCTTCGATCT
66 AAGATCTGTAATTCAGCCTGTTAACCTACTGCTTAGGGGGTTAAGGCTCACTATCTTCGATCT
8911573 GCTCCGCTAC
Statistics
Matches: 120, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
132 120 1.00
ACGTcount: A:0.21, C:0.25, G:0.23, T:0.31
Consensus pattern (132 bp):
TACCCTACTGCTTAGGGGGTCAAGGCACACCGTCTTCGATCTACTCCGCTACTGCTTAGAGAGAT
AAGATCTGTAATTCAGCCTGTTAACCTACTGCTTAGGGGGTTAAGGCTCACTATCTTCGATCTAC
AT
Found at i:8911542 original size:86 final size:86
Alignment explanation
Indices: 8911444--8911635 Score: 303
Period size: 86 Copynumber: 2.2 Consensus size: 86
8911434 TCGATCTACA
*
8911444 TTACCCTACTGCTTAGGGGGTCAAGGCACACCGTCTTCGATCTACTCCGCTACTGCTTAGAGAGA
1 TTACCCTACTGCTTAGGGGGTCAAGGCACACCATCTTCGATCTACTCCGCTACTGCTTAGAGAGA
*
8911509 TAAGATCTGTAATTCGGCCTG
66 TAAGATCTGTAATTCAGCCTG
* ** * * *
8911530 TTACCCTACTGCTTAGGGGGTTAAGGCTTACTATCTTCGATCTGCTCCGCTACTGCTTAGGGAGA
1 TTACCCTACTGCTTAGGGGGTCAAGGCACACCATCTTCGATCTACTCCGCTACTGCTTAGAGAGA
*
8911595 TAAGATCTGTAATTTAGCCTG
66 TAAGATCTGTAATTCAGCCTG
8911616 TTACCCTACTGCTTAGGGGG
1 TTACCCTACTGCTTAGGGGG
8911636 CTAAGGTTAG
Statistics
Matches: 97, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
86 97 1.00
ACGTcount: A:0.21, C:0.24, G:0.24, T:0.31
Consensus pattern (86 bp):
TTACCCTACTGCTTAGGGGGTCAAGGCACACCATCTTCGATCTACTCCGCTACTGCTTAGAGAGA
TAAGATCTGTAATTCAGCCTG
Found at i:8911616 original size:218 final size:218
Alignment explanation
Indices: 8911225--8911641 Score: 681
Period size: 218 Copynumber: 1.9 Consensus size: 218
8911215 AATTCGGCCT
* * * * * * *
8911225 ATTACCTTACTGCTTAGGGGGTTAAGGCTCACCGTCTTTGATTTACTCTGCTACTACTTAGGGAG
1 ATTACCCTACTGCTTAGGGGGTCAAGGCACACCGTCTTCGATCTACTCCGCTACTACTTAGAGAG
*
8911290 ATAAGATCTGTAATTCGGCCTGCTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCT
66 ATAAGATCTGTAATTCGGCCTGCTACCCTACTGCTTAGGGGGTTAAGGCTCACCATCTTCGATCT
* *
8911355 ACTTCGCTACTGCTTAGGGAGATAAGATCTGTAATTCAGCCTGTTAACCTACTGCTTAGGGGGTT
131 ACTCCGCTACTGCTTAGGGAGATAAGATCTGTAATTCAGCCTGTTAACCTACTGCTTAGGGGGCT
8911420 AAGGCTCACTGTCTTCGATCTAC
196 AAGGCTCACTGTCTTCGATCTAC
*
8911443 ATTACCCTACTGCTTAGGGGGTCAAGGCACACCGTCTTCGATCTACTCCGCTACTGCTTAGAGAG
1 ATTACCCTACTGCTTAGGGGGTCAAGGCACACCGTCTTCGATCTACTCCGCTACTACTTAGAGAG
* * *
8911508 ATAAGATCTGTAATTCGGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTACTATCTTCGATCT
66 ATAAGATCTGTAATTCGGCCTGCTACCCTACTGCTTAGGGGGTTAAGGCTCACCATCTTCGATCT
* * *
8911573 GCTCCGCTACTGCTTAGGGAGATAAGATCTGTAATTTAGCCTGTTACCCTACTGCTTAGGGGGCT
131 ACTCCGCTACTGCTTAGGGAGATAAGATCTGTAATTCAGCCTGTTAACCTACTGCTTAGGGGGCT
8911638 AAGG
196 AAGG
8911642 TTAGTAAATT
Statistics
Matches: 182, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
218 182 1.00
ACGTcount: A:0.21, C:0.24, G:0.24, T:0.31
Consensus pattern (218 bp):
ATTACCCTACTGCTTAGGGGGTCAAGGCACACCGTCTTCGATCTACTCCGCTACTACTTAGAGAG
ATAAGATCTGTAATTCGGCCTGCTACCCTACTGCTTAGGGGGTTAAGGCTCACCATCTTCGATCT
ACTCCGCTACTGCTTAGGGAGATAAGATCTGTAATTCAGCCTGTTAACCTACTGCTTAGGGGGCT
AAGGCTCACTGTCTTCGATCTAC
Found at i:8911797 original size:64 final size:64
Alignment explanation
Indices: 8911696--8911823 Score: 202
Period size: 64 Copynumber: 2.0 Consensus size: 64
8911686 TCATGTATCT
*
8911696 ATGCTTATGCCAAATAATTAGGATATGATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGCTTATGCCAAATAATTAGAATATGATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
* * * * *
8911760 ATGCTTATGTCAACTAATTAGAATGTTATGATCGAAATGAGTCAAATGCTCCTAACTAGATGTG
1 ATGCTTATGCCAAATAATTAGAATATGATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
8911824 TTATGAATGA
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 58 1.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (64 bp):
ATGCTTATGCCAAATAATTAGAATATGATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
Found at i:8917850 original size:3 final size:3
Alignment explanation
Indices: 8917842--8918315 Score: 93
Period size: 3 Copynumber: 157.7 Consensus size: 3
8917832 ACATAAAATG
* * * * *
8917842 ATA ATA ATA CTA ATG TTA ATA GTA GTA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * *
8917890 ATA ATA AT- ATA GTTA A-A A-A ATA ATA GTA ATA GTA ATA GTG GTA
1 ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * *
8917933 ATG ATA ATA A-A AAA ATA GTG ATA ATA A-A ATA ATG ATA TTA GTA CATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA
* * *
8917980 A-A TATAA ATA GAGA TATA ATA CT- TTA A-A AT- ATA ATA ATA ATA ATA
1 ATA -AT-A ATA -ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*** *
8918025 AT- ATA GGC A-A ATA A-A TTA GATA A-A ATA A-A TATA GATGA A-A AT-
1 ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA -ATA -AT-A ATA ATA
* ** * * *
8918067 ATA CTA ATA GCA ATA ATA CCATA GTA ATA ATG ATA ATA ATA ATT ATA
1 ATA ATA ATA ATA ATA ATA --ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * ** * * * * * *
8918114 GCATG TTAA ATA ATA GTA GGA ATA ATA GTC GTA ATA ATT ATA AGA ATG
1 --ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * *
8918162 ATA ATG ATA ATA GA-A ATAA ATG ATA ACA GTA CTA ATG TTA ATA ATA
1 ATA ATA ATA ATA -ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * *
8918208 ATA A-A ATA AAA ATT GTA ATA ATA GTA ATA ATA ATA TTG ATA ATA GATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA
* ** * * *
8918256 ATA ATA ATA CAGA GGA ATA ATA ATA ATA GTA ATA ATA AAA ACA ATA
1 ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
8918302 ATA ATG ATA ATA AT
1 ATA ATA ATA ATA AT
8918316 CAATTAATTA
Statistics
Matches: 327, Mismatches: 110, Indels: 68
0.65 0.22 0.13
Matches are distributed among these distances:
2 30 0.09
3 264 0.81
4 26 0.08
5 7 0.02
ACGTcount: A:0.56, C:0.03, G:0.10, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:8918052 original size:14 final size:16
Alignment explanation
Indices: 8918033--8918067 Score: 56
Period size: 14 Copynumber: 2.3 Consensus size: 16
8918023 TAATATAGGC
8918033 AAATAAAT-TAGAT-A
1 AAATAAATATAGATGA
8918047 AAATAAATATAGATGA
1 AAATAAATATAGATGA
8918063 AAATA
1 AAATA
8918068 TACTAATAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 8 0.42
15 5 0.26
16 6 0.32
ACGTcount: A:0.66, C:0.00, G:0.09, T:0.26
Consensus pattern (16 bp):
AAATAAATATAGATGA
Found at i:8919766 original size:85 final size:86
Alignment explanation
Indices: 8919611--8919771 Score: 227
Period size: 85 Copynumber: 1.9 Consensus size: 86
8919601 CTTCGATCCA
** *
8919611 CTCTACCGCAACTTCAGAGAAATAAGATCTGTTGTTTTCAGCCTACTCCACTGCAACTTCAAGGA
1 CTCTACCGCAACTTCAGAGAAATAAGATCTGTTGACTTCAACCTACTCCACTGCAACTTCAAGGA
8919676 GATAAGGTTTGCTATGATCTG
66 GATAAGGTTTGCTATGATCTG
* * * * *
8919697 CTCTACTGCAATTTCAGAGAGATAAGA-CTCG-TGACTTCAACCTGCTCCACTGCAACTTCAGGG
1 CTCTACCGCAACTTCAGAGAAATAAGATCT-GTTGACTTCAACCTACTCCACTGCAACTTCAAGG
8919760 AGATAAGGTTTG
65 AGATAAGGTTTG
8919772 TGATTTGTAG
Statistics
Matches: 66, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
85 41 0.62
86 25 0.38
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.29
Consensus pattern (86 bp):
CTCTACCGCAACTTCAGAGAAATAAGATCTGTTGACTTCAACCTACTCCACTGCAACTTCAAGGA
GATAAGGTTTGCTATGATCTG
Found at i:8919904 original size:88 final size:88
Alignment explanation
Indices: 8919791--8919999 Score: 305
Period size: 88 Copynumber: 2.4 Consensus size: 88
8919781 GCTTCAATCG
* * *
8919791 CTCCAATGTCATTTCAGGGTA-AAGAGATTTGTAGCTTCAATCTACTCCGCTGGAACTTCAAAGA
1 CTCCAGTGCCATTTCAGGG-AGAAGAGATTTGTAGCTTCAATCTACTCCGCTAGAACTTCAAAGA
* *
8919855 GATACAAATTCTGGC-TTCGAGCCT
65 GATACAAATTATGACTTTC-AGCCT
* *
8919879 CTCCAGTGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTAGAACTTCAAGGAG
1 CTCCAGTGCCATTTCAGGGAGAAGAGATTTGTAGCTTCAATCTACTCCGCTAGAACTTCAAAGAG
*
8919944 ATACGAATTATGACTTTCAGCCT
66 ATACAAATTATGACTTTCAGCCT
*
8919967 CTCAAGTGCCATTTCAGGGAGAAGAGATTTGTA
1 CTCCAGTGCCATTTCAGGGAGAAGAGATTTGTA
8920000 ATTCGGCCTA
Statistics
Matches: 110, Mismatches: 9, Indels: 4
0.89 0.07 0.03
Matches are distributed among these distances:
87 1 0.01
88 106 0.96
89 3 0.03
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29
Consensus pattern (88 bp):
CTCCAGTGCCATTTCAGGGAGAAGAGATTTGTAGCTTCAATCTACTCCGCTAGAACTTCAAAGAG
ATACAAATTATGACTTTCAGCCT
Found at i:8919944 original size:44 final size:43
Alignment explanation
Indices: 8919812--8919944 Score: 103
Period size: 44 Copynumber: 3.0 Consensus size: 43
8919802 TTTCAGGGTA
* *
8919812 AAGAGATTTGTAGCTTCAATCTACTCCGCTGGAACTTCAAAGAG
1 AAGAGATTTGTAGCTTCGATCTACTCCGCT-GAACTTCAAGGAG
* * * * * *
8919856 ATACAAATTCTG--GCTTCGAGCCT-CTCCAG-TGCCATTTCAGGGAG
1 A-AGAGATT-TGTAGCTTCGA-TCTACTCC-GCTG-AACTTCAAGGAG
8919900 AAGAGATTTGTAGCTTCGATCTACTCCGCTAGAACTTCAAGGAG
1 AAGAGATTTGTAGCTTCGATCTACTCCGCT-GAACTTCAAGGAG
8919944 A
1 A
8919945 TACGAATTAT
Statistics
Matches: 65, Mismatches: 14, Indels: 20
0.66 0.14 0.20
Matches are distributed among these distances:
42 2 0.03
43 9 0.14
44 43 0.66
45 9 0.14
46 2 0.03
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (43 bp):
AAGAGATTTGTAGCTTCGATCTACTCCGCTGAACTTCAAGGAG
Found at i:8920106 original size:42 final size:42
Alignment explanation
Indices: 8920059--8920196 Score: 111
Period size: 42 Copynumber: 3.2 Consensus size: 42
8920049 ATCTGCTCCA
8920059 CTACTGCTTAAGGAGACAAGATCTGTAATTCGGCCTGTTACC
1 CTACTGCTTAAGGAGACAAGATCTGTAATTCGGCCTGTTACC
** * * * * ** *
8920101 CTACTGCTTAAGG-GTTTAAGGCTCACCGT-CTTTGATCTGCT-CC
1 CTACTGCTTAAGGAG-ACAA-GAT--CTGTAATTCGGCCTGTTACC
*
8920144 ACTACTGCTTAGGGAGACAAGATCTGTAATTCGGCCTGTTACC
1 -CTACTGCTTAAGGAGACAAGATCTGTAATTCGGCCTGTTACC
*
8920187 TTACTGCTTA
1 CTACTGCTTA
8920197 GGGGTAAGGC
Statistics
Matches: 68, Mismatches: 20, Indels: 16
0.65 0.19 0.15
Matches are distributed among these distances:
41 4 0.06
42 31 0.46
43 8 0.12
44 21 0.31
45 4 0.06
ACGTcount: A:0.22, C:0.25, G:0.21, T:0.32
Consensus pattern (42 bp):
CTACTGCTTAAGGAGACAAGATCTGTAATTCGGCCTGTTACC
Found at i:8920261 original size:42 final size:41
Alignment explanation
Indices: 8920215--8920367 Score: 119
Period size: 42 Copynumber: 3.6 Consensus size: 41
8920205 GCTTACTATC
*
8920215 TTCGATCTGCTCCACTATTGCTTAGAGAGATAAGATCTGTAA
1 TTCGATCTGTTCC-CTATTGCTTAGAGAGATAAGATCTGTAA
* * * * * *
8920257 TTCGATCTGTTACCCTACTACTTAGAGGGTTAAGGCTCATCGT-C
1 TTCGATCTGTT-CCCTATTGCTTAGAGAGATAA-GATC-T-GTAA
* * *
8920301 TTCGATCTATTCCGCTATAGCTTAGGGAGATAAGATCTGTAA
1 TTCGATCTGTTCC-CTATTGCTTAGAGAGATAAGATCTGTAA
** *
8920343 TTCGGCCTGTTACCCTACTGCTTAG
1 TTCGATCTGTT-CCCTATTGCTTAG
8920368 GGGGTTAAGG
Statistics
Matches: 83, Mismatches: 21, Indels: 14
0.70 0.18 0.12
Matches are distributed among these distances:
41 2 0.02
42 43 0.52
43 12 0.14
44 24 0.29
45 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (41 bp):
TTCGATCTGTTCCCTATTGCTTAGAGAGATAAGATCTGTAA
Found at i:8920269 original size:170 final size:168
Alignment explanation
Indices: 8919982--8920482 Score: 623
Period size: 170 Copynumber: 2.9 Consensus size: 168
8919972 GTGCCATTTC
* * *
8919982 AGGGAGAAGAGATTTGTAATTCGGCCTATTACCCTATTGCTTAGAGGGTTAAGGCTCATCGTT-T
1 AGGGAGAA-AGATCTGTAATTCGGCCTGTTACCCTACTGCTTAG-GGGTTAAGGCTCA-C-TTCT
*
8920046 TCGATCTGCTCCACTACTGCTTA-AGGAGACAAGATCTGTAATTCGGCCTGTTACCCTACTGCTT
62 TCGATCTGCTCCACTACTGCTTAGA-GAGATAAGATCTGTAATTCGGCCTGTTACCCTACTGCTT
* *
8920110 AAGGGTTTAAGGCTCACCGTCTTTGATCTGCTCCACTACT-GCTT
126 AAGGG-TTAAGGCTCACCGTCTTCGATCTACTCCACTA-TAGCTT
* *
8920154 AGGGAGACAAGATCTGTAATTCGGCCTGTTACCTTACTGCTTAGGGG-TAAGGCTTACTATCTTC
1 AGGGAGA-AAGATCTGTAATTCGGCCTGTTACCCTACTGCTTAGGGGTTAAGGCTCACT-TCTTC
* ** *
8920218 GATCTGCTCCACTATTGCTTAGAGAGATAAGATCTGTAATTCGATCTGTTACCCTACTACTTAGA
64 GATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGTAATTCGGCCTGTTACCCTACTGCTTA-A
* * *
8920283 GGGTTAAGGCTCATCGTCTTCGATCTATTCCGCTATAGCTT
128 GGGTTAAGGCTCACCGTCTTCGATCTACTCCACTATAGCTT
8920324 AGGGAGATAAGATCTGTAATTCGGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACTGTCTT
1 AGGGAGA-AAGATCTGTAATTCGGCCTGTTACCCTACTGCTTA-GGGGTTAAGGCTCACT-TCTT
* * ** * *
8920389 CAATCTACTCTGCTACTGCTTAGGGAGATAAGATCTGTAATTCGGCCTGTTACCCTACTGTTTAG
63 CGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGTAATTCGGCCTGTTACCCTACTGCTTA-
* ** *
8920454 GGGGTTAAGGCTCATTGTCTTCCATCTAC
127 AGGGTTAAGGCTCACCGTCTTCGATCTAC
8920483 ATTACCCTAC
Statistics
Matches: 288, Mismatches: 33, Indels: 16
0.85 0.10 0.05
Matches are distributed among these distances:
168 1 0.00
169 3 0.01
170 139 0.48
171 12 0.04
172 132 0.46
173 1 0.00
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.33
Consensus pattern (168 bp):
AGGGAGAAAGATCTGTAATTCGGCCTGTTACCCTACTGCTTAGGGGTTAAGGCTCACTTCTTCGA
TCTGCTCCACTACTGCTTAGAGAGATAAGATCTGTAATTCGGCCTGTTACCCTACTGCTTAAGGG
TTAAGGCTCACCGTCTTCGATCTACTCCACTATAGCTT
Found at i:8920456 original size:256 final size:258
Alignment explanation
Indices: 8919991--8920465 Score: 713
Period size: 256 Copynumber: 1.8 Consensus size: 258
8919981 CAGGGAGAAG
* * * * * *
8919991 AGATTTGTAATTCGGCCTATTACCCTATTGCTTAGAGGGTTAAGGCTCATCGTTTTCGATCTGCT
1 AGATCTGTAATTCGACCTATTACCCTACTACTTAGAGGGTTAAGGCTCATCGTCTTCGATCTACT
*
8920056 CCACTACTGCTTAAGGAGACAAGATCTGTAATTCGGCCTGTTACCCTACTGCTTAAGGGTTTAAG
66 CCACTACTGCTTAAGGAGACAAGATCTGTAATTCGGCCTGTTACCCTACTGCTTAAGGGGTTAAG
** *
8920121 GCTCACCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTCGGCCTGTTAC
131 GCTCACCGTCTTCAATCTACTCCACTACTGCTTAGGGAGACAAGATCTGTAATTCGGCCTGTTAC
*
8920186 CTTACTGCTTA-GGGG-TAAGGCTTACTATCTTCGATCTGCTCCACTATTGCTTAGAGAGATA
196 CCTACTGCTTAGGGGGTTAAGGCTTACTATCTTCGATCTGCTCCACTATTGCTTAGAGAGATA
* * *
8920247 AGATCTGTAATTCGATCTGTTACCCTACTACTTAGAGGGTTAAGGCTCATCGTCTTCGATCTATT
1 AGATCTGTAATTCGACCTATTACCCTACTACTTAGAGGGTTAAGGCTCATCGTCTTCGATCTACT
* * * *
8920312 CCGCTA-TAGCTTAGGGAGATAAGATCTGTAATTCGGCCTGTTACCCTACTGCTTAGGGGGTTAA
66 CCACTACT-GCTTAAGGAGACAAGATCTGTAATTCGGCCTGTTACCCTACTGCTTAAGGGGTTAA
* ** *
8920376 GGCTCACTGTCTTCAATCTACTCTGCTACTGCTTAGGGAGATAAGATCTGTAATTCGGCCTGTTA
130 GGCTCACCGTCTTCAATCTACTCCACTACTGCTTAGGGAGACAAGATCTGTAATTCGGCCTGTTA
*
8920441 CCCTACTGTTTAGGGGGTTAAGGCT
195 CCCTACTGCTTAGGGGGTTAAGGCT
8920466 CATTGTCTTC
Statistics
Matches: 193, Mismatches: 23, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
255 1 0.01
256 181 0.94
257 4 0.02
258 7 0.04
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.33
Consensus pattern (258 bp):
AGATCTGTAATTCGACCTATTACCCTACTACTTAGAGGGTTAAGGCTCATCGTCTTCGATCTACT
CCACTACTGCTTAAGGAGACAAGATCTGTAATTCGGCCTGTTACCCTACTGCTTAAGGGGTTAAG
GCTCACCGTCTTCAATCTACTCCACTACTGCTTAGGGAGACAAGATCTGTAATTCGGCCTGTTAC
CCTACTGCTTAGGGGGTTAAGGCTTACTATCTTCGATCTGCTCCACTATTGCTTAGAGAGATA
Found at i:8920473 original size:86 final size:86
Alignment explanation
Indices: 8919982--8920501 Score: 636
Period size: 86 Copynumber: 6.0 Consensus size: 86
8919972 GTGCCATTTC
* * * * * *
8919982 AGGGAGA-AGAGATTTGTAATTCGGCCTATTACCCTATTGCTTAGAGGGTTAAGGCTCATCGTTT
1 AGGGAGATA-AGATCTGTAATTCGGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCT
*
8920046 TCGATCTGCTCCACTACTGCTT
65 TCGATCTACTCCACTACTGCTT
* * * *
8920068 AAGGAGACAAGATCTGTAATTCGGCCTGTTACCCTACTGCTTAAGGGTTTAAGGCTCACCGTCTT
1 AGGGAGATAAGATCTGTAATTCGGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTT
* *
8920133 TGATCTGCTCCACTACTGCTT
66 CGATCTACTCCACTACTGCTT
* * * **
8920154 AGGGAGACAAGATCTGTAATTCGGCCTGTTACCTTACTGCTTA-GGGG-TAAGGCTTACTATCTT
1 AGGGAGATAAGATCTGTAATTCGGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTT
* *
8920217 CGATCTGCTCCACTATTGCTT
66 CGATCTACTCCACTACTGCTT
* ** * * *
8920238 AGAGAGATAAGATCTGTAATTCGATCTGTTACCCTACTACTTAGAGGGTTAAGGCTCATCGTCTT
1 AGGGAGATAAGATCTGTAATTCGGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTT
* *
8920303 CGATCTATTCCGCTA-TAGCTT
66 CGATCTACTCCACTACT-GCTT
*
8920324 AGGGAGATAAGATCTGTAATTCGGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACTGTCTT
1 AGGGAGATAAGATCTGTAATTCGGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTT
* **
8920389 CAATCTACTCTGCTACTGCTT
66 CGATCTACTCCACTACTGCTT
* **
8920410 AGGGAGATAAGATCTGTAATTCGGCCTGTTACCCTACTGTTTAGGGGGTTAAGGCTCATTGTCTT
1 AGGGAGATAAGATCTGTAATTCGGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTT
*
8920475 CCATCTACATTACC-CTACTGCTT
66 CGATCTAC--T-CCACTACTGCTT
8920498 AGGG
1 AGGG
8920502 GGTTAAGGCT
Statistics
Matches: 380, Mismatches: 46, Indels: 14
0.86 0.10 0.03
Matches are distributed among these distances:
84 69 0.18
85 7 0.02
86 287 0.76
87 2 0.01
88 14 0.04
89 1 0.00
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.33
Consensus pattern (86 bp):
AGGGAGATAAGATCTGTAATTCGGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTT
CGATCTACTCCACTACTGCTT
Found at i:8920490 original size:46 final size:45
Alignment explanation
Indices: 8920438--8920545 Score: 155
Period size: 46 Copynumber: 2.4 Consensus size: 45
8920428 ATTCGGCCTG
* **
8920438 TTACCCTACTGTTTAGGGGGTTAAGGCTCATTGTCTTCCATCTAC
1 TTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCCATCTAC
*
8920483 ATTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTAC
1 -TTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCCATCTAC
*
8920529 TT-CGCTACTGCTTAGGG
1 TTACCCTACTGCTTAGGG
8920546 AGATAAGATC
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
44 14 0.25
45 2 0.04
46 41 0.72
ACGTcount: A:0.18, C:0.26, G:0.22, T:0.34
Consensus pattern (45 bp):
TTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCCATCTAC
Found at i:8920620 original size:77 final size:74
Alignment explanation
Indices: 8920496--8920649 Score: 236
Period size: 77 Copynumber: 2.0 Consensus size: 74
8920486 ACCCTACTGC
* *
8920496 TTAGGGGGTTAAGGCTCACCGTCTTCGATCTACTTCGCTACTGCTTAGGGAGATAAGATCTGTAA
1 TTAGGGGGTTAAGGCTCACCGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAA
*
8920561 TTCGGCCTG
66 TTCAGCCTG
*
8920570 TTAGGGGGTTAAGGCTCACCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTG
1 TTAGGGGGTTAAGGCT---CACCGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTG
*
8920635 TAATTTAGCCTG
63 TAATTCAGCCTG
8920647 TTA
1 TTA
8920650 CCCTACTGCT
Statistics
Matches: 72, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
74 16 0.22
77 56 0.78
ACGTcount: A:0.21, C:0.22, G:0.25, T:0.31
Consensus pattern (74 bp):
TTAGGGGGTTAAGGCTCACCGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAA
TTCAGCCTG
Found at i:8920828 original size:64 final size:64
Alignment explanation
Indices: 8920727--8920854 Score: 202
Period size: 64 Copynumber: 2.0 Consensus size: 64
8920717 TCATGTATCT
8920727 ATGCTTATGCCAAATAATTAGGATACGATGATCGAAATAAATCAAATGCTCCTAACTAGATGTG
1 ATGCTTATGCCAAATAATTAGGATACGATGATCGAAATAAATCAAATGCTCCTAACTAGATGTG
* * * * * *
8920791 ATGCTTATGTCAACTAATTAGGATGCTATGATCGAAATGAGTCAAATGCTCCTAACTAGATGTG
1 ATGCTTATGCCAAATAATTAGGATACGATGATCGAAATAAATCAAATGCTCCTAACTAGATGTG
8920855 TTATGAATGA
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 58 1.00
ACGTcount: A:0.36, C:0.16, G:0.19, T:0.30
Consensus pattern (64 bp):
ATGCTTATGCCAAATAATTAGGATACGATGATCGAAATAAATCAAATGCTCCTAACTAGATGTG
Found at i:8922057 original size:3 final size:3
Alignment explanation
Indices: 8922051--8922221 Score: 96
Period size: 3 Copynumber: 56.3 Consensus size: 3
8922041 ATAATAGTCG
* * * * * *
8922051 TAA TAA TTA TAA GAA TGA TAA TGA TAA TAGA -AA TAAA TGA TAA TAG
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA T-AA TAA TAA TAA
* ** * ** *
8922097 TAC TAA TGT TAA TAA TAA TAA -AA TAA AAA TTG TAA TAA TAG TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * *
8922144 TAA TAA TAT TGA TAA TAGA TAA TAA TAA TACA -AA GGAA TAA TAA TAG
1 TAA TAA TAA TAA TAA TA-A TAA TAA TAA TA-A TAA -TAA TAA TAA TAA
* * *
8922191 TAA TAA TAA AAA CAA TAA TAA TGA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
8922222 CAATTAATTA
Statistics
Matches: 123, Mismatches: 37, Indels: 16
0.70 0.21 0.09
Matches are distributed among these distances:
2 4 0.03
3 109 0.89
4 10 0.08
ACGTcount: A:0.58, C:0.02, G:0.09, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:8928234 original size:18 final size:18
Alignment explanation
Indices: 8928211--8928282 Score: 67
Period size: 18 Copynumber: 3.9 Consensus size: 18
8928201 AGTTTATTAT
8928211 TTATATTTTTTAAATTTA
1 TTATATTTTTTAAATTTA
*
8928229 TTATATATTTTAAATATTTA
1 TTATAT-TTTTTAA-ATTTA
* *
8928249 TGTATA-TTTATAAATTTT
1 T-TATATTTTTTAAATTTA
8928267 TTA-ATTTTTTAGAATT
1 TTATATTTTTTA-AATT
8928283 AGGATCAAAT
Statistics
Matches: 44, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
16 1 0.02
17 7 0.16
18 15 0.34
19 11 0.25
20 6 0.14
21 4 0.09
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (18 bp):
TTATATTTTTTAAATTTA
Found at i:8928820 original size:9 final size:9
Alignment explanation
Indices: 8928802--8928869 Score: 63
Period size: 9 Copynumber: 7.6 Consensus size: 9
8928792 AAAGAATTTC
8928802 ATAA-TTTT
1 ATAATTTTT
8928810 ATAATTTTT
1 ATAATTTTT
8928819 ATAAATTTTT
1 AT-AATTTTT
8928829 A-ATATTTTT
1 ATA-ATTTTT
8928838 AT-ATTTTT
1 ATAATTTTT
*
8928846 ATAATATTTC
1 ATAAT-TTTT
8928856 AT-ATTTTT
1 ATAATTTTT
8928864 CATAAT
1 -ATAAT
8928870 ATATATAATA
Statistics
Matches: 50, Mismatches: 2, Indels: 14
0.76 0.03 0.21
Matches are distributed among these distances:
8 16 0.32
9 19 0.38
10 15 0.30
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (9 bp):
ATAATTTTT
Found at i:8928831 original size:17 final size:17
Alignment explanation
Indices: 8928804--8928846 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
8928794 AGAATTTCAT
8928804 AATTTTATAAT-TTTTATA
1 AATTTT-TAATATTTT-TA
8928822 AATTTTTAATATTTTTA
1 AATTTTTAATATTTTTA
*
8928839 TATTTTTA
1 AATTTTTA
8928847 TAATATTTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 13 0.57
18 10 0.43
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (17 bp):
AATTTTTAATATTTTTA
Found at i:8928835 original size:19 final size:19
Alignment explanation
Indices: 8928802--8928854 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 19
8928792 AAAGAATTTC
8928802 ATAATTTTAT-A-ATTTTT
1 ATAATTTTATAATATTTTT
8928819 ATAAATTTT-TAATATTTTT
1 AT-AATTTTATAATATTTTT
*
8928838 ATATTTTTATAATATTT
1 ATAATTTTATAATATTT
8928855 CATATTTTTC
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
17 3 0.10
18 12 0.39
19 16 0.52
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (19 bp):
ATAATTTTATAATATTTTT
Found at i:8928862 original size:17 final size:18
Alignment explanation
Indices: 8928797--8928871 Score: 73
Period size: 18 Copynumber: 4.1 Consensus size: 18
8928787 TAACAAAAGA
8928797 ATTTCATAATTTTATAAT
1 ATTTCATAATTTTATAAT
*
8928815 -TTTTATAAATTTT-TAAT
1 ATTTCAT-AATTTTATAAT
* *
8928832 ATTTTTATATTTTTATAAT
1 A-TTTCATAATTTTATAAT
*
8928851 ATTTCATATTTTTCATAAT
1 ATTTCATAATTTT-ATAAT
8928870 AT
1 AT
8928872 ATATAATATT
Statistics
Matches: 49, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
17 9 0.18
18 22 0.45
19 18 0.37
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (18 bp):
ATTTCATAATTTTATAAT
Found at i:8928877 original size:28 final size:27
Alignment explanation
Indices: 8928797--8928889 Score: 107
Period size: 28 Copynumber: 3.4 Consensus size: 27
8928787 TAACAAAAGA
*
8928797 ATTTCATAATTTTATAATTTTTATAAAT
1 ATTTCATATTTTTATAATTTTTAT-AAT
* *
8928825 TTTTAATATTTTTAT-ATTTTTATAAT
1 ATTTCATATTTTTATAATTTTTATAAT
* *
8928851 ATTTCATATTTTTCATAATATATATAAT
1 ATTTCATATTTTT-ATAATTTTTATAAT
*
8928879 ATTTCTTATTT
1 ATTTCATATTT
8928890 ATAATAGATT
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
26 14 0.25
27 10 0.18
28 31 0.56
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.61
Consensus pattern (27 bp):
ATTTCATATTTTTATAATTTTTATAAT
Found at i:8950384 original size:31 final size:30
Alignment explanation
Indices: 8950349--8950409 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 30
8950339 CTTTAATATG
*
8950349 AACTTTGGAAAAATTACATTTTTTGCCCCTA
1 AACTTTGGAAAAATTACA-CTTTTGCCCCTA
* * *
8950380 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
8950410 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 11 0.42
31 15 0.58
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:8951834 original size:36 final size:36
Alignment explanation
Indices: 8951794--8951866 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
8951784 GCTTGTATTT
*
8951794 ACTCGTTCCACGTTCATAGTAATTCAATCATAATTA
1 ACTCGTTCCACATTCATAGTAATTCAATCATAATTA
8951830 ACTCGTTCCACATTCATAGTAATTCAATCATAATTA
1 ACTCGTTCCACATTCATAGTAATTCAATCATAATTA
8951866 A
1 A
8951867 ACACATATAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.36, C:0.22, G:0.07, T:0.36
Consensus pattern (36 bp):
ACTCGTTCCACATTCATAGTAATTCAATCATAATTA
Found at i:8954053 original size:40 final size:40
Alignment explanation
Indices: 8953998--8954081 Score: 159
Period size: 40 Copynumber: 2.1 Consensus size: 40
8953988 CCCGAAATAA
*
8953998 AATCCATAATCACTCTATCCTATTTCCACTCGGGGATCAT
1 AATCCATAATCACTCTATCCCATTTCCACTCGGGGATCAT
8954038 AATCCATAATCACTCTATCCCATTTCCACTCGGGGATCAT
1 AATCCATAATCACTCTATCCCATTTCCACTCGGGGATCAT
8954078 AATC
1 AATC
8954082 GACTGCAATA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.29, C:0.31, G:0.10, T:0.31
Consensus pattern (40 bp):
AATCCATAATCACTCTATCCCATTTCCACTCGGGGATCAT
Found at i:8959344 original size:43 final size:43
Alignment explanation
Indices: 8959263--8959375 Score: 140
Period size: 43 Copynumber: 2.6 Consensus size: 43
8959253 GATGCTACTA
* * *
8959263 TCCCAGACAGGGTCTTACACG-AGATCAATTAACGATGCCAATG
1 TCCCAGACATGGTCTTACACGTA-ATCAAATAACAATGCCAATG
* *
8959306 TCCCAGACATGGTCTTACACGTAATCTAAAT-ACAATGCCATTT
1 TCCCAGACATGGTCTTACACGTAATC-AAATAACAATGCCAATG
*
8959349 TCCCAGACATGGTCTTACATGTAATCA
1 TCCCAGACATGGTCTTACACGTAATCA
8959376 TATCTTGGTA
Statistics
Matches: 62, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
42 1 0.02
43 57 0.92
44 4 0.06
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.27
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACGTAATCAAATAACAATGCCAATG
Found at i:8959909 original size:28 final size:29
Alignment explanation
Indices: 8959868--8959923 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 29
8959858 ATTTCATGAA
*
8959868 TTAACCCCTCAATTTACACTTTTT-TCAAT
1 TTAACCCCTCAATTGACA-TTTTTGTCAAT
*
8959897 TTAATCCCT-AATTGACATTTTTGTCAA
1 TTAACCCCTCAATTGACATTTTTGTCAA
8959924 AAATCACTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 5 0.21
28 11 0.46
29 8 0.33
ACGTcount: A:0.29, C:0.23, G:0.04, T:0.45
Consensus pattern (29 bp):
TTAACCCCTCAATTGACATTTTTGTCAAT
Found at i:8961015 original size:147 final size:149
Alignment explanation
Indices: 8960725--8961030 Score: 571
Period size: 147 Copynumber: 2.0 Consensus size: 149
8960715 ACTGGAGTGA
8960725 TAACTATTATTGTAAGCAAATTCAACTAAAGGCAAATATTTTTCCCTGTTACCTTCAAACTCAAA
1 TAACTATTATTGTAAGC-AA-T-AACTAAAGGCAAATATTTTTCCCTGTTACCTTCAAACTCAAA
8960790 AATACAACACCGAAGCATATCCTTCAAATTTTTTATTACACGCTCAGATTGACCATCTGTTTGGG
63 AATACAACACCGAAGCATATCCTTCAAATTTTTTATTACACGCTCAGATTGACCATCTGTTTGGG
8960855 GATGGAATGTAGTGCTGAAATG
128 GATGGAATGTAGTGCTGAAATG
8960877 TAACTATTATTGTAAGC-A-AACTAAAGGCAAATATTTTTCCCTGTTACCTTCAAACTCAAAAAT
1 TAACTATTATTGTAAGCAATAACTAAAGGCAAATATTTTTCCCTGTTACCTTCAAACTCAAAAAT
8960940 ACAACACCGAAGCATATCCTTCAAATTTTTTATTACACGCTCAGATTGACCATCTGTTTGGGGAT
66 ACAACACCGAAGCATATCCTTCAAATTTTTTATTACACGCTCAGATTGACCATCTGTTTGGGGAT
8961005 GGAATGTAGTGCTGAAATG
131 GGAATGTAGTGCTGAAATG
8961024 TAACTAT
1 TAACTAT
8961031 GTGCCCAGAG
Statistics
Matches: 154, Mismatches: 0, Indels: 5
0.97 0.00 0.03
Matches are distributed among these distances:
147 136 0.88
150 1 0.01
152 17 0.11
ACGTcount: A:0.34, C:0.19, G:0.14, T:0.32
Consensus pattern (149 bp):
TAACTATTATTGTAAGCAATAACTAAAGGCAAATATTTTTCCCTGTTACCTTCAAACTCAAAAAT
ACAACACCGAAGCATATCCTTCAAATTTTTTATTACACGCTCAGATTGACCATCTGTTTGGGGAT
GGAATGTAGTGCTGAAATG
Found at i:8976674 original size:39 final size:40
Alignment explanation
Indices: 8976574--8976758 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 40
8976564 TTGAATGATG
* * *
8976574 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
** * *
8976613 ATCCGGATTAAGAT-CCGAAGGCATTTGTGTGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
8976654 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACAAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
8976693 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
8976732 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
8976759 AACGAGGAGC
Statistics
Matches: 120, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
39 34 0.28
40 77 0.64
41 9 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:8976710 original size:79 final size:81
Alignment explanation
Indices: 8976574--8976758 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
8976564 TTGAATGATG
* *
8976574 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGATTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAAAATCCGGATTAAGATCCGAAGGCATT
*
8976638 TGTGTGAGATACTA-A
66 TGTGCGAGATACTATA
* * *
8976653 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACAAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAAAATCCGGATTAAGAT-CCGAAGGCA
*
8976715 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
8976733 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
8976759 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAAAATCCGGATTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:8976789 original size:79 final size:79
Alignment explanation
Indices: 8976575--8976791 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
8976565 TGAATGATGT
** * * * *
8976575 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGATTAAGA-TCCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACAAAATCCGGGTTAA-ATTCCGAAGGCATT
* *
8976638 TGTGTGAGATACTAATT
63 TGTGCGAGATACTAATA
** * * *
8976655 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACAAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACAAAATCCGGGTTAAATTCCGAAGGCATTTGT
*
8976720 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * * *
8976734 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTACAT-CTGGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CAAAATCCGGGTTAAATTCCGAAGG
8976792 TACGTGATTT
Statistics
Matches: 113, Mismatches: 19, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
78 2 0.02
79 72 0.64
80 39 0.35
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACAAAATCCGGGTTAAATTCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:8979844 original size:20 final size:21
Alignment explanation
Indices: 8979806--8979846 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
8979796 AAATTTTATC
*
8979806 TTATAATCATTTTTGTAAAAA
1 TTATAATCATTTTTCTAAAAA
*
8979827 TTATAATGA-TTTTCTAAAAA
1 TTATAATCATTTTTCTAAAAA
8979847 CAGAACAGGG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.46
Consensus pattern (21 bp):
TTATAATCATTTTTCTAAAAA
Found at i:8986991 original size:22 final size:22
Alignment explanation
Indices: 8986966--8987020 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
8986956 AATAAAATTT
*
8986966 TAAAATATATA-TTAGAATTAAA
1 TAAAATATAAATTTAGAA-TAAA
*
8986988 TAAAA-ATAAATTTTGAATAAA
1 TAAAATATAAATTTAGAATAAA
*
8987009 TAAAATAAAAAT
1 TAAAATATAAAT
8987021 ATGAAAAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
21 13 0.46
22 15 0.54
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.33
Consensus pattern (22 bp):
TAAAATATAAATTTAGAATAAA
Found at i:8987025 original size:21 final size:21
Alignment explanation
Indices: 8986984--8987029 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
8986974 ATATTAGAAT
* *
8986984 TAAATAAAAATAAATTTTGAA
1 TAAATAAAAATAAAATATGAA
8987005 TAAAT-AAAATAAAAATATGAA
1 TAAATAAAAAT-AAAATATGAA
8987026 -AAAT
1 TAAAT
8987030 TTTAAAAACT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 9 0.41
21 13 0.59
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.28
Consensus pattern (21 bp):
TAAATAAAAATAAAATATGAA
Found at i:8987228 original size:18 final size:17
Alignment explanation
Indices: 8987207--8987241 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
8987197 AAAATAAATT
8987207 ATAAACAATAAATTAAAA
1 ATAAACAATAAA-TAAAA
8987225 ATAAACAATAAATAAAA
1 ATAAACAATAAATAAAA
8987242 TTGCCATCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.74, C:0.06, G:0.00, T:0.20
Consensus pattern (17 bp):
ATAAACAATAAATAAAA
Found at i:8995154 original size:27 final size:27
Alignment explanation
Indices: 8995059--8995360 Score: 249
Period size: 27 Copynumber: 11.0 Consensus size: 27
8995049 TGGAAATCCA
*
8995059 CCTCCTAACAACATGGGAGGAATG-C-
1 CCTCCTAACAATATGGGAGGAATGCCG
* * * *
8995084 CTTAC-AACAATAGGGGAGGTATGCCAG
1 CCTCCTAACAATATGGGAGGAATGCC-G
8995111 ---CC-AACAATATGGGGGGAGGAATGCCG
1 CCTCCTAACAATAT---GGGAGGAATGCCG
8995137 CCTCCTAACAATATGGGAGGAATGCCG
1 CCTCCTAACAATATGGGAGGAATGCCG
* ** *
8995164 CCGCGGAACAACATGGGAGGAGGAATGCCG
1 CCTCCTAACAATAT--G-GGAGGAATGCCG
*
8995194 CCTCCTAACAATATGGGAGGAATGCCA
1 CCTCCTAACAATATGGGAGGAATGCCG
* ** * *
8995221 CCGCGGAACAACATGGGAGGAGGAATGCCA
1 CCTCCTAACAATAT--G-GGAGGAATGCCG
*
8995251 CCTTCTAACAATATGGGAGGAATGCCG
1 CCTCCTAACAATATGGGAGGAATGCCG
*
8995278 CCTCCTAACAACATGGGAGGAGGAATGCCG
1 CCTCCTAACAATAT--G-GGAGGAATGCCG
*
8995308 CCTTCTAACAATATGGGAGGAATGCCG
1 CCTCCTAACAATATGGGAGGAATGCCG
* * *
8995335 CCTCCTAACAACATGGGTGGGATGCC
1 CCTCCTAACAATATGGGAGGAATGCC
8995361 ACCAGGTCCA
Statistics
Matches: 223, Mismatches: 35, Indels: 36
0.76 0.12 0.12
Matches are distributed among these distances:
24 23 0.10
25 4 0.02
26 1 0.00
27 112 0.50
28 3 0.01
29 5 0.02
30 75 0.34
ACGTcount: A:0.30, C:0.24, G:0.30, T:0.16
Consensus pattern (27 bp):
CCTCCTAACAATATGGGAGGAATGCCG
Found at i:8995196 original size:57 final size:57
Alignment explanation
Indices: 8995089--8995351 Score: 370
Period size: 57 Copynumber: 4.7 Consensus size: 57
8995079 AATGCCTTAC
* * * * *
8995089 AACAATAGGGGAGGTATG-C-CAGCC-AACAATATGGGGGGAGGAATGCCGCCTCCT
1 AACAATATGGGAGGAATGCCGCCGCCGAACAACATGGGAGGAGGAATGCCGCCTCCT
*
8995143 AACAATATGGGAGGAATGCCGCCGCGGAACAACATGGGAGGAGGAATGCCGCCTCCT
1 AACAATATGGGAGGAATGCCGCCGCCGAACAACATGGGAGGAGGAATGCCGCCTCCT
* * * *
8995200 AACAATATGGGAGGAATGCCACCGCGGAACAACATGGGAGGAGGAATGCCACCTTCT
1 AACAATATGGGAGGAATGCCGCCGCCGAACAACATGGGAGGAGGAATGCCGCCTCCT
* * *
8995257 AACAATATGGGAGGAATGCCGCCTCCTAACAACATGGGAGGAGGAATGCCGCCTTCT
1 AACAATATGGGAGGAATGCCGCCGCCGAACAACATGGGAGGAGGAATGCCGCCTCCT
* *
8995314 AACAATATGGGAGGAATGCCGCCTCCTAACAACATGGG
1 AACAATATGGGAGGAATGCCGCCGCCGAACAACATGGG
8995352 TGGGATGCCA
Statistics
Matches: 192, Mismatches: 14, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
54 16 0.08
55 1 0.01
56 3 0.02
57 172 0.90
ACGTcount: A:0.31, C:0.24, G:0.30, T:0.15
Consensus pattern (57 bp):
AACAATATGGGAGGAATGCCGCCGCCGAACAACATGGGAGGAGGAATGCCGCCTCCT
Found at i:9001491 original size:32 final size:33
Alignment explanation
Indices: 9001445--9001506 Score: 108
Period size: 32 Copynumber: 1.9 Consensus size: 33
9001435 GGTTGGCATT
9001445 CATGATGGGAGAATGGATTATCACAAATGATTC
1 CATGATGGGAGAATGGATTATCACAAATGATTC
*
9001478 CATGAT-GGAGAATGGATTATCACCAATGA
1 CATGATGGGAGAATGGATTATCACAAATGA
9001507 CATCATTTGT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
32 22 0.79
33 6 0.21
ACGTcount: A:0.37, C:0.13, G:0.24, T:0.26
Consensus pattern (33 bp):
CATGATGGGAGAATGGATTATCACAAATGATTC
Found at i:9002936 original size:13 final size:13
Alignment explanation
Indices: 9002914--9002947 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
9002904 ATGTGCTATA
*
9002914 GAAAAATACTTTT
1 GAAAAGTACTTTT
*
9002927 GAGAAGTACTTTT
1 GAAAAGTACTTTT
9002940 GAAAAGTA
1 GAAAAGTA
9002948 TGATTTAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.44, C:0.06, G:0.18, T:0.32
Consensus pattern (13 bp):
GAAAAGTACTTTT
Found at i:9019091 original size:51 final size:51
Alignment explanation
Indices: 9019015--9019119 Score: 210
Period size: 51 Copynumber: 2.1 Consensus size: 51
9019005 ATCTCACAAA
9019015 TCACTCGATGGAAAATTGTGGAAGATTTTCTCTATAACTAAAGTATAACCC
1 TCACTCGATGGAAAATTGTGGAAGATTTTCTCTATAACTAAAGTATAACCC
9019066 TCACTCGATGGAAAATTGTGGAAGATTTTCTCTATAACTAAAGTATAACCC
1 TCACTCGATGGAAAATTGTGGAAGATTTTCTCTATAACTAAAGTATAACCC
9019117 TCA
1 TCA
9019120 AGATACGTTT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.31
Consensus pattern (51 bp):
TCACTCGATGGAAAATTGTGGAAGATTTTCTCTATAACTAAAGTATAACCC
Found at i:9019817 original size:9 final size:8
Alignment explanation
Indices: 9019798--9019827 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
9019788 AATATTTATA
9019798 TTTTTTG-
1 TTTTTTGT
9019805 TTTTTTGT
1 TTTTTTGT
9019813 TTTTTTGT
1 TTTTTTGT
9019821 TTTTTTG
1 TTTTTTG
9019828 CGAAATAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 7 0.32
8 15 0.68
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (8 bp):
TTTTTTGT
Found at i:9020891 original size:35 final size:35
Alignment explanation
Indices: 9020852--9020921 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
9020842 ATCTATGAGG
*
9020852 AAGAGGAGCTCAAATAAGAGGCAAACACCTTTTTT
1 AAGAGGAGCTCAAATAAGAGGCAAACACATTTTTT
9020887 AAGAGGAGCTCAAATAAGAGGCAAACACATTTTTT
1 AAGAGGAGCTCAAATAAGAGGCAAACACATTTTTT
9020922 CATAATCTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.41, C:0.16, G:0.20, T:0.23
Consensus pattern (35 bp):
AAGAGGAGCTCAAATAAGAGGCAAACACATTTTTT
Found at i:9026750 original size:25 final size:25
Alignment explanation
Indices: 9026708--9026761 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 25
9026698 GTTAAGTGTG
*
9026708 ATTTTTTTCATAAAAT-AATTTTAA
1 ATTTTTTTCAAAAAATAAATTTTAA
*
9026732 ATTTTTTTTAAAAAGATAAATTTTAA
1 ATTTTTTTCAAAAA-ATAAATTTTAA
9026758 ATTT
1 ATTT
9026762 ATGTTAAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 12 0.46
25 2 0.08
26 12 0.46
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.54
Consensus pattern (25 bp):
ATTTTTTTCAAAAAATAAATTTTAA
Found at i:9027571 original size:174 final size:174
Alignment explanation
Indices: 9027149--9027555 Score: 724
Period size: 174 Copynumber: 2.3 Consensus size: 174
9027139 CACTAGTTGG
** * *
9027149 AAGAATCCATGCAAAGCAAACCAAGGACTAATTATAGAAAAGTCAGTCTACGTTAAAGTGACATA
1 AAGAATCCACCCAAAGTAAAGCAAGGACTAATTATAGAAAAGTCAGTCTACGTTAAAGTGACATA
*
9027214 AAGCTCCAAACACCCGTCTGTGATCCAGAAATGTTCAACCTCTTATCCCCAAATCACTTACAAAT
66 AAGCTCCAAACACCCGTCTGTGATCCAGAAATGTTCAACCTCTTATCCCCAAATCACTCACAAAT
9027279 AGTAATGACAAATTGTGGAAAATGTTCTCAATAACTACAAGAAT
131 AGTAATGACAAATTGTGGAAAATGTTCTCAATAACTACAAGAAT
* * *
9027323 TAGATTCCACCCAAAGTAAAGCAAGGACTAATTATAGAAAAGTCAGTCTACGTTAAAGTGACGTA
1 AAGAATCCACCCAAAGTAAAGCAAGGACTAATTATAGAAAAGTCAGTCTACGTTAAAGTGACATA
*
9027388 AAGCTCCAAATACCCGTCTGTGATCCAGAAATGTTCAACCTCTTATCCCCAAATCACTCACAAAT
66 AAGCTCCAAACACCCGTCTGTGATCCAGAAATGTTCAACCTCTTATCCCCAAATCACTCACAAAT
9027453 AGTAATGACAAATTGTGGAAAATGTTCTCAATAACTACAAGAAT
131 AGTAATGACAAATTGTGGAAAATGTTCTCAATAACTACAAGAAT
*
9027497 AAGAATCCACCCAAAGTAAAGCAAGGACTAATTATAGAAAAGTCAGTCTATGTTAAAGT
1 AAGAATCCACCCAAAGTAAAGCAAGGACTAATTATAGAAAAGTCAGTCTACGTTAAAGT
9027556 ATCATTTAAC
Statistics
Matches: 221, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
174 221 1.00
ACGTcount: A:0.41, C:0.20, G:0.14, T:0.24
Consensus pattern (174 bp):
AAGAATCCACCCAAAGTAAAGCAAGGACTAATTATAGAAAAGTCAGTCTACGTTAAAGTGACATA
AAGCTCCAAACACCCGTCTGTGATCCAGAAATGTTCAACCTCTTATCCCCAAATCACTCACAAAT
AGTAATGACAAATTGTGGAAAATGTTCTCAATAACTACAAGAAT
Found at i:9028445 original size:88 final size:88
Alignment explanation
Indices: 9028297--9028526 Score: 270
Period size: 89 Copynumber: 2.6 Consensus size: 88
9028287 ATTTTTTAAT
* * *
9028297 AAAAA-CAAGGGCTTAATTGCTTTTGTTCTTTAAAAAGTTTGAGGGTGTTTTTGATGTATTTTGA
1 AAAAAGCATGGGCTTAATTGC--TT-TT-TTTGAAAAGTTTGAGGG-CTTTTTGATGTATTTTGA
* * * *
9028361 AAGTTCAAGTACTCAATTGAGTG-TAAA
61 AACTTCAAGTACCCAAATGAGTGAAAAA
9028388 AAAAAGCATGGGCTTAATTGCTTTTTTTGAAAAGGTTTGAGGGCCTTTTT-ATGTATTTTGAAAC
1 AAAAAGCATGGGCTTAATTGCTTTTTTTGAAAA-GTTTGAGGG-CTTTTTGATGTATTTTGAAAC
9028452 TTCAAGTACCCAAATGAGTGAAAAA
64 TTCAAGTACCCAAATGAGTGAAAAA
* *
9028477 AAAAAGCAAT-GGCTTAATTACTCTTTTTGTAAAAGTTTGAGGGCTTTTTG
1 AAAAAGC-ATGGGCTTAATTGCTTTTTTTG-AAAAGTTTGAGGGCTTTTTG
9028527 CACCCTTAAG
Statistics
Matches: 123, Mismatches: 10, Indels: 14
0.84 0.07 0.10
Matches are distributed among these distances:
88 44 0.36
89 52 0.42
90 8 0.07
91 5 0.04
92 14 0.11
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (88 bp):
AAAAAGCATGGGCTTAATTGCTTTTTTTGAAAAGTTTGAGGGCTTTTTGATGTATTTTGAAACTT
CAAGTACCCAAATGAGTGAAAAA
Found at i:9039699 original size:38 final size:38
Alignment explanation
Indices: 9039648--9039720 Score: 146
Period size: 38 Copynumber: 1.9 Consensus size: 38
9039638 TTTTAATGAT
9039648 TATTTTTCGTGTATGTCTATATATAGCAACAAACATAA
1 TATTTTTCGTGTATGTCTATATATAGCAACAAACATAA
9039686 TATTTTTCGTGTATGTCTATATATAGCAACAAACA
1 TATTTTTCGTGTATGTCTATATATAGCAACAAACA
9039721 GATTAGAAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.40
Consensus pattern (38 bp):
TATTTTTCGTGTATGTCTATATATAGCAACAAACATAA
Found at i:9045575 original size:21 final size:21
Alignment explanation
Indices: 9045549--9045596 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
9045539 TGTTGATATA
9045549 TTATTTGTTTTATTATT-TAAT
1 TTATTTGTTTT-TTATTATAAT
*
9045570 TTATTTATTTTTTATTATAAT
1 TTATTTGTTTTTTATTATAAT
9045591 TT-TTTG
1 TTATTTG
9045597 GTTATTGCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 8 0.33
21 16 0.67
ACGTcount: A:0.23, C:0.00, G:0.04, T:0.73
Consensus pattern (21 bp):
TTATTTGTTTTTTATTATAAT
Found at i:9046707 original size:11 final size:11
Alignment explanation
Indices: 9046681--9046713 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
9046671 TATTTTTTAC
*
9046681 AAAATATAAA-
1 AAAATAAAAAT
9046691 AAAATAAAAAT
1 AAAATAAAAAT
9046702 AAAATAAAAAT
1 AAAATAAAAAT
9046713 A
1 A
9046714 TCAGGTAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
10 9 0.43
11 12 0.57
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:9053110 original size:23 final size:23
Alignment explanation
Indices: 9053054--9053099 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
9053044 CATATATAAA
9053054 GAGGTCTTTTGATTGTTTTTTGG
1 GAGGTCTTTTGATTGTTTTTTGG
9053077 GAGGTCTTTTGATTGTTTTTTGG
1 GAGGTCTTTTGATTGTTTTTTGG
9053100 ACTTTGTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.09, C:0.04, G:0.30, T:0.57
Consensus pattern (23 bp):
GAGGTCTTTTGATTGTTTTTTGG
Found at i:9057739 original size:14 final size:13
Alignment explanation
Indices: 9057703--9057731 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
9057693 ATTTGATTTT
9057703 AATTATAAA-AAA
1 AATTATAAATAAA
9057715 AATTATAAATAAA
1 AATTATAAATAAA
9057728 AATT
1 AATT
9057732 TTGAAATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.56
13 7 0.44
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
AATTATAAATAAA
Found at i:9057743 original size:22 final size:21
Alignment explanation
Indices: 9057714--9057754 Score: 73
Period size: 22 Copynumber: 1.9 Consensus size: 21
9057704 ATTATAAAAA
9057714 AAATTATAAATAAAAATTTTG
1 AAATTATAAATAAAAATTTTG
9057735 AAATATATAAATAAAAATTT
1 AAAT-TATAAATAAAAATTT
9057755 ATCAAGTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (21 bp):
AAATTATAAATAAAAATTTTG
Found at i:9059886 original size:22 final size:22
Alignment explanation
Indices: 9059859--9059932 Score: 71
Period size: 22 Copynumber: 3.4 Consensus size: 22
9059849 ACCACACAAG
*
9059859 AGAGCACCATAGTGCTAAGCAA
1 AGAGCACCAAAGTGCTAAGCAA
* * *
9059881 AGAGCATCAAAATGTTGAA-CAA
1 AGAGCACCAAAGTGCT-AAGCAA
*
9059903 AAAGCACCAAAGTGCTAAG-AA
1 AGAGCACCAAAGTGCTAAGCAA
9059924 GAGAGCACC
1 -AGAGCACC
9059933 GATGTGTTGA
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
21 4 0.10
22 34 0.85
23 2 0.05
ACGTcount: A:0.46, C:0.20, G:0.22, T:0.12
Consensus pattern (22 bp):
AGAGCACCAAAGTGCTAAGCAA
Found at i:9059953 original size:44 final size:44
Alignment explanation
Indices: 9059854--9059960 Score: 108
Period size: 44 Copynumber: 2.4 Consensus size: 44
9059844 ACTACACCAC
* *
9059854 ACAAGAGAGCACCATAGTGCTAAGCAAAGAGCATCAAAATGTTGA
1 ACAA-AGAGCACCAAAGTGCTAAGCAAAGAGCACCAAAATGTTGA
* * **
9059899 ACAAAAAGCACCAAAGTGCTAAG-AAGAGAGCACCGATGTGTTGA
1 ACAAAGAGCACCAAAGTGCTAAGCAA-AGAGCACCAAAATGTTGA
** *
9059943 ACAGGGAGCACTAAAGTG
1 ACAAAGAGCACCAAAGTG
9059961 GTAAACAATT
Statistics
Matches: 51, Mismatches: 10, Indels: 3
0.80 0.16 0.05
Matches are distributed among these distances:
43 2 0.04
44 45 0.88
45 4 0.08
ACGTcount: A:0.43, C:0.18, G:0.25, T:0.14
Consensus pattern (44 bp):
ACAAAGAGCACCAAAGTGCTAAGCAAAGAGCACCAAAATGTTGA
Found at i:9060771 original size:120 final size:121
Alignment explanation
Indices: 9060624--9060856 Score: 387
Period size: 120 Copynumber: 1.9 Consensus size: 121
9060614 TCTATGTTCA
* * *
9060624 AAACTAACAAATTTTTCTTTACAAACTAGTCCTTTTTCATATCTAAGCTTAAAATTTAACAATTT
1 AAACTAACAAATTTTACTTTACAAACTAGTCATTTTTCATATCTAAGCTTAAAATCTAACAATTT
9060689 AGTACCAAAA-ATTCAAGATTCAACAATGGAAACATTTGAAAACTTTAATATTTTT
66 AGTACCAAAAGATTCAAGATTCAACAATGGAAACATTTGAAAACTTTAATATTTTT
9060744 AAACTAACAAATTTTACTTTACAAACTAGTCATTTTTCATATCTAAGCTTAAAATCTAACAATTT
1 AAACTAACAAATTTTACTTTACAAACTAGTCATTTTTCATATCTAAGCTTAAAATCTAACAATTT
* * * * *
9060809 AGTACCAAAAGTTTCAAGTTTCAATAATGGCAACATTTGAAAATTTTA
66 AGTACCAAAAGATTCAAGATTCAACAATGGAAACATTTGAAAACTTTA
9060857 CAGTTTTGAA
Statistics
Matches: 104, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
120 72 0.69
121 32 0.31
ACGTcount: A:0.42, C:0.15, G:0.06, T:0.37
Consensus pattern (121 bp):
AAACTAACAAATTTTACTTTACAAACTAGTCATTTTTCATATCTAAGCTTAAAATCTAACAATTT
AGTACCAAAAGATTCAAGATTCAACAATGGAAACATTTGAAAACTTTAATATTTTT
Found at i:9061485 original size:9 final size:9
Alignment explanation
Indices: 9061467--9061615 Score: 67
Period size: 9 Copynumber: 16.0 Consensus size: 9
9061457 AAAGAATTTC
9061467 ATAA-TTTT
1 ATAATTTTT
9061475 ATAATTTTT
1 ATAATTTTT
9061484 ATAACTTTTT
1 ATAA-TTTTT
9061494 A-ATATTTTT
1 ATA-ATTTTT
*
9061503 ATAATATTTC
1 ATAAT-TTTT
9061513 AT-ATTTTT
1 ATAATTTTT
9061521 CATAATATATTT
1 -ATAAT-T-TTT
* *
9061533 CTAATATTTA
1 ATAAT-TTTT
*
9061543 ATAATATTT
1 ATAATTTTT
*
9061552 ATAATATTT
1 ATAATTTTT
* *
9061561 CTTATTTTT
1 ATAATTTTT
9061570 AATAGA--TTT
1 -ATA-ATTTTT
9061579 A-AAGTTTTT
1 ATAA-TTTTT
*
9061588 ATAGTTTTT
1 ATAATTTTT
**
9061597 ATTTTTTTCT
1 ATAATTTT-T
9061607 ATAATTTTT
1 ATAATTTTT
9061616 TTTAAAAATT
Statistics
Matches: 108, Mismatches: 17, Indels: 31
0.69 0.11 0.20
Matches are distributed among these distances:
6 1 0.01
7 1 0.01
8 8 0.07
9 57 0.53
10 30 0.28
11 8 0.07
12 3 0.03
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (9 bp):
ATAATTTTT
Found at i:9061533 original size:21 final size:18
Alignment explanation
Indices: 9061478--9061528 Score: 66
Period size: 19 Copynumber: 2.7 Consensus size: 18
9061468 TAATTTTATA
* *
9061478 ATTTTTATAACTTTTTAAT
1 ATTTTTATAA-TATTTCAT
9061497 ATTTTTATAATATTTCAT
1 ATTTTTATAATATTTCAT
9061515 ATTTTTCATAATAT
1 ATTTTT-ATAATAT
9061529 ATTTCTAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
18 12 0.41
19 17 0.59
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (18 bp):
ATTTTTATAATATTTCAT
Found at i:9061538 original size:30 final size:30
Alignment explanation
Indices: 9061472--9061558 Score: 83
Period size: 30 Copynumber: 3.0 Consensus size: 30
9061462 ATTTCATAAT
* *
9061472 TTTATAAT-TTTTATAACT-TTT-TAATATT
1 TTTATAATATTTAATAA-TATTTATAATATA
* *
9061500 TTTATAATATTTCAT-ATTTTTCATAATATA
1 TTTATAATATTTAATAATATTT-ATAATATA
*
9061530 TTTCTAATATTTAATAATATTTATAATAT
1 TTTATAATATTTAATAATATTTATAATAT
9061559 TTCTTATTTT
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
27 1 0.02
28 12 0.24
29 5 0.10
30 26 0.53
31 5 0.10
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.59
Consensus pattern (30 bp):
TTTATAATATTTAATAATATTTATAATATA
Found at i:9061551 original size:19 final size:18
Alignment explanation
Indices: 9061523--9061560 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
9061513 ATATTTTTCA
*
9061523 TAATATATTTCTAATATT
1 TAATATATTTATAATATT
9061541 TAATAATATTTATAATATT
1 TAAT-ATATTTATAATATT
9061560 T
1 T
9061561 CTTATTTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (18 bp):
TAATATATTTATAATATT
Found at i:9061556 original size:49 final size:46
Alignment explanation
Indices: 9061462--9061570 Score: 130
Period size: 49 Copynumber: 2.3 Consensus size: 46
9061452 TAACAAAAGA
* * *
9061462 ATTTCATAATTTTATAATTTTTATAACTTTTTAATATTTTTATAAT
1 ATTTCATATTTTTATAATTTTTATAACTATTTAATATATTTATAAT
*
9061508 ATTTCATATTTTTCATAATATATTTCTAA-TATTTAATAATATTTATAAT
1 ATTTCATATTTTT-ATAAT-T-TTTATAACTATTTAAT-ATATTTATAAT
*
9061557 ATTTCTTATTTTTA
1 ATTTCATATTTTTA
9061571 ATAGATTTAA
Statistics
Matches: 54, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
46 12 0.22
47 5 0.09
48 9 0.17
49 28 0.52
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.60
Consensus pattern (46 bp):
ATTTCATATTTTTATAATTTTTATAACTATTTAATATATTTATAAT
Found at i:9064517 original size:25 final size:25
Alignment explanation
Indices: 9064489--9064540 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
9064479 TAAAAAGTGA
*
9064489 AAGTTGATAGAGCTAGACCGAGCTC
1 AAGTTGATAGAGCTAAACCGAGCTC
9064514 AAGTTGATAGAGCTAAACCGAGCTC
1 AAGTTGATAGAGCTAAACCGAGCTC
9064539 AA
1 AA
9064541 CCAAGCTTCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.37, C:0.19, G:0.25, T:0.19
Consensus pattern (25 bp):
AAGTTGATAGAGCTAAACCGAGCTC
Found at i:9068508 original size:5 final size:5
Alignment explanation
Indices: 9068498--9068525 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
9068488 TTGTGTGTTC
9068498 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
9068526 CAAAAATTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:9076964 original size:72 final size:72
Alignment explanation
Indices: 9076847--9076985 Score: 217
Period size: 72 Copynumber: 1.9 Consensus size: 72
9076837 GATATACAAT
* * *
9076847 AATGATACATGGGAATAGGTTGATAAGTCAGTCCAGAAAATAATCATTAGTGTAACATGGGTATT
1 AATGATACATAGGAATAGGTTGATAAGTCAGTCCAGAAAAGAATCATTAGTGTAACATAGGTATT
9076912 CAGGACC
66 CAGGACC
* *
9076919 AATGATACATAGGAACT-GGTTGATAGGTCAGTCCAGAAAAGAATCATTGGTGTAACATAGGTAT
1 AATGATACATAGGAA-TAGGTTGATAAGTCAGTCCAGAAAAGAATCATTAGTGTAACATAGGTAT
9076983 TCA
65 TCA
9076986 ATACCAAGTA
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
72 60 0.98
73 1 0.02
ACGTcount: A:0.37, C:0.12, G:0.24, T:0.27
Consensus pattern (72 bp):
AATGATACATAGGAATAGGTTGATAAGTCAGTCCAGAAAAGAATCATTAGTGTAACATAGGTATT
CAGGACC
Found at i:9085073 original size:69 final size:69
Alignment explanation
Indices: 9084871--9085080 Score: 287
Period size: 69 Copynumber: 3.0 Consensus size: 69
9084861 TCATCTGTAA
* * * * *
9084871 CCTTAATATGATAGCTGAGAGTTTTGCTCTCACTAACTGTGTTGGAGGCTGTGGCTCTTCATCTA
1 CCTTAATATGATAGCTGAGAGCTTTGCTCTCACTAACTGTGTTAGAGGCTATGGCTCTTCACCTG
9084936 CGAG
66 CGAG
**
9084940 CCTTAATATGATAGCTGAGAGCTTTGCTCTCACTAACTGTGTTAGAGGCTACAGCTCTTCACCTG
1 CCTTAATATGATAGCTGAGAGCTTTGCTCTCACTAACTGTGTTAGAGGCTATGGCTCTTCACCTG
9085005 CGAG
66 CGAG
* * * **
9085009 CCTTAATATGACAGCTG-GGGACTTTGCTCTCGCTAACTGTGTTAGAGATTATGGCTCTTCACCT
1 CCTTAATATGATAGCTGAGAG-CTTTGCTCTCACTAACTGTGTTAGAGGCTATGGCTCTTCACCT
*
9085073 GTGAG
65 GCGAG
9085078 CCT
1 CCT
9085081 CTTCACCTGC
Statistics
Matches: 125, Mismatches: 15, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
68 2 0.02
69 123 0.98
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.33
Consensus pattern (69 bp):
CCTTAATATGATAGCTGAGAGCTTTGCTCTCACTAACTGTGTTAGAGGCTATGGCTCTTCACCTG
CGAG
Found at i:9085095 original size:16 final size:16
Alignment explanation
Indices: 9085063--9085096 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
9085053 GAGATTATGG
**
9085063 CTCTTCACCTGTGAGC
1 CTCTTCACCTGCAAGC
9085079 CTCTTCACCTGCAAGC
1 CTCTTCACCTGCAAGC
9085095 CT
1 CT
9085097 TAATAATATC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.15, C:0.41, G:0.15, T:0.29
Consensus pattern (16 bp):
CTCTTCACCTGCAAGC
Found at i:9106662 original size:44 final size:46
Alignment explanation
Indices: 9106575--9106662 Score: 112
Period size: 44 Copynumber: 2.0 Consensus size: 46
9106565 TTTCTTTAGT
* *
9106575 TTATATATAATATAATATAATATAATTAAAACATAAAATATCTTTA
1 TTATATATAATATAATATAATATAACTAAAACATAAAAAATCTTTA
9106621 TTATATAATAATAT-A-ATAATAT-ACT-AAACATAAAAAAATCTT
1 TTATAT-ATAATATAATATAATATAACTAAAACAT-AAAAAATCTT
9106663 AGATTTTCTT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
43 6 0.16
44 11 0.29
45 7 0.18
46 7 0.18
47 7 0.18
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.39
Consensus pattern (46 bp):
TTATATATAATATAATATAATATAACTAAAACATAAAAAATCTTTA
Found at i:9113683 original size:13 final size:13
Alignment explanation
Indices: 9113667--9113700 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
9113657 TTTTAAATCA
9113667 TACTTTTCAAAAG
1 TACTTTTCAAAAG
*
9113680 TACTTCTCAAAAG
1 TACTTTTCAAAAG
*
9113693 TATTTTTC
1 TACTTTTC
9113701 TATAGCACAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.32, C:0.18, G:0.06, T:0.44
Consensus pattern (13 bp):
TACTTTTCAAAAG
Found at i:9113793 original size:33 final size:34
Alignment explanation
Indices: 9113755--9113824 Score: 124
Period size: 34 Copynumber: 2.1 Consensus size: 34
9113745 TAAAATTGCT
*
9113755 ATTTAAATTCTT-AAATTTTTTTAAAAATTTTAA
1 ATTTAAATTCTTAAAATTTTTTTAAAAAATTTAA
9113788 ATTTAAATTCTTAAAATTTTTTTAAAAAATTTAA
1 ATTTAAATTCTTAAAATTTTTTTAAAAAATTTAA
9113822 ATT
1 ATT
9113825 AGTAAAGGTA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
33 12 0.34
34 23 0.66
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (34 bp):
ATTTAAATTCTTAAAATTTTTTTAAAAAATTTAA
Found at i:9115115 original size:32 final size:32
Alignment explanation
Indices: 9115073--9115137 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
9115063 ACAAATGATG
9115073 TCATTGGTGATAATCCATTCTCCATCATGGAA
1 TCATTGGTGATAATCCATTCTCCATCATGGAA
*
9115105 TCATTTGTGATAATCCATTCTCCATCATGGAA
1 TCATTGGTGATAATCCATTCTCCATCATGGAA
9115137 T
1 T
9115138 GCCAACCCTC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.37
Consensus pattern (32 bp):
TCATTGGTGATAATCCATTCTCCATCATGGAA
Found at i:9118408 original size:12 final size:12
Alignment explanation
Indices: 9118378--9118410 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
9118368 TATATATTTT
9118378 AAAATT-ATATA
1 AAAATTAATATA
9118389 AAAA-TAATATA
1 AAAATTAATATA
9118400 AAAATTAATAT
1 AAAATTAATAT
9118411 GGACTGATCG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:9121408 original size:30 final size:27
Alignment explanation
Indices: 9121340--9121640 Score: 256
Period size: 27 Copynumber: 11.0 Consensus size: 27
9121330 TGGACCTGGT
* * *
9121340 GGCATCCCACCCATGTTGTTAGGAGGC
1 GGCATTCCTCCCATATTGTTAGGAGGC
*
9121367 GGCATTCCTCCCATATTGTTAGAAGGC
1 GGCATTCCTCCCATATTGTTAGGAGGC
*
9121394 GGCATTCCTCCTCCCATGTTGTTAGGAGGC
1 GGCA-T--TCCTCCCATATTGTTAGGAGGC
* *
9121424 GGCATTCCTCCCATATTGTTAGAAGGT
1 GGCATTCCTCCCATATTGTTAGGAGGC
* ** * *
9121451 GGCATTCCTCCTCCCATGTTGTTCCGCGGT
1 GGCA-T--TCCTCCCATATTGTTAGGAGGC
9121481 GGCATTCCTCCCATATTGTTAGGAGGC
1 GGCATTCCTCCCATATTGTTAGGAGGC
* ** *
9121508 GGCATTCCTCCTCCCATGTTGTTCCGCGGC
1 GGCA-T--TCCTCCCATATTGTTAGGAGGC
9121538 GGCATTCCTCCCATATTGTTAGGAGGC
1 GGCATTCCTCCCATATTGTTAGGAGGC
9121565 GGCATTCCTCCCCCATATTGTT----GGC
1 GGCATTCCT--CCCATATTGTTAGGAGGC
* * * *
9121590 TGGCATACCTCCCCTATTGTT-GTA--A
1 -GGCATTCCTCCCATATTGTTAGGAGGC
*
9121615 GGCATTCCTCCCATGTTGTTAGGAGG
1 GGCATTCCTCCCATATTGTTAGGAGG
9121641 TGGATTTCCA
Statistics
Matches: 222, Mismatches: 34, Indels: 36
0.76 0.12 0.12
Matches are distributed among these distances:
24 27 0.12
25 5 0.02
26 8 0.04
27 98 0.44
28 3 0.01
29 14 0.06
30 67 0.30
ACGTcount: A:0.16, C:0.30, G:0.24, T:0.31
Consensus pattern (27 bp):
GGCATTCCTCCCATATTGTTAGGAGGC
Found at i:9121437 original size:57 final size:57
Alignment explanation
Indices: 9121349--9121586 Score: 370
Period size: 57 Copynumber: 4.2 Consensus size: 57
9121339 TGGCATCCCA
*
9121349 CCCATGTTGTTAGGAGGCGGCATTCCTCCCATATTGTTAGAAGGCGGCATTCCTCCT
1 CCCATGTTGTTACGAGGCGGCATTCCTCCCATATTGTTAGAAGGCGGCATTCCTCCT
* *
9121406 CCCATGTTGTTAGGAGGCGGCATTCCTCCCATATTGTTAGAAGGTGGCATTCCTCCT
1 CCCATGTTGTTACGAGGCGGCATTCCTCCCATATTGTTAGAAGGCGGCATTCCTCCT
* * * *
9121463 CCCATGTTGTTCCGCGGTGGCATTCCTCCCATATTGTTAGGAGGCGGCATTCCTCCT
1 CCCATGTTGTTACGAGGCGGCATTCCTCCCATATTGTTAGAAGGCGGCATTCCTCCT
* * *
9121520 CCCATGTTGTTCCGCGGCGGCATTCCTCCCATATTGTTAGGAGGCGGCATTCCTCC-
1 CCCATGTTGTTACGAGGCGGCATTCCTCCCATATTGTTAGAAGGCGGCATTCCTCCT
*
9121576 CCCATATTGTT
1 CCCATGTTGTT
9121587 GGCTGGCATA
Statistics
Matches: 172, Mismatches: 9, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
56 10 0.06
57 162 0.94
ACGTcount: A:0.15, C:0.30, G:0.24, T:0.31
Consensus pattern (57 bp):
CCCATGTTGTTACGAGGCGGCATTCCTCCCATATTGTTAGAAGGCGGCATTCCTCCT
Found at i:9129480 original size:18 final size:17
Alignment explanation
Indices: 9129453--9129487 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
9129443 GAGATGGCAA
9129453 TTTTATTTATTGTTTAT
1 TTTTATTTATTGTTTAT
9129470 TTTTAATTTATTGTTTAT
1 TTTT-ATTTATTGTTTAT
9129488 AATTTATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.20, C:0.00, G:0.06, T:0.74
Consensus pattern (17 bp):
TTTTATTTATTGTTTAT
Found at i:9129496 original size:18 final size:17
Alignment explanation
Indices: 9129454--9129496 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 17
9129444 AGATGGCAAT
*
9129454 TTTATTTATTGTTTATT
1 TTTATTTATTGTTTATA
9129471 TTTAATTTATTGTTTATAA
1 TTT-ATTTATTGTTTAT-A
9129490 TTTATTT
1 TTTATTT
9129497 TTATTAGTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 3 0.13
18 17 0.74
19 3 0.13
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.72
Consensus pattern (17 bp):
TTTATTTATTGTTTATA
Found at i:9129705 original size:21 final size:23
Alignment explanation
Indices: 9129677--9129729 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
9129667 TTTTCATATT
9129677 TTTA-TTTTATTT-ATTC-AAAA
1 TTTATTTTTATTTAATTCTAAAA
*
9129697 TTTATTTTTATTTAATTCTAATA
1 TTTATTTTTATTTAATTCTAAAA
*
9129720 TATATTTTTA
1 TTTATTTTTA
9129730 AAATTTTATT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 4 0.14
21 8 0.29
22 4 0.14
23 12 0.43
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (23 bp):
TTTATTTTTATTTAATTCTAAAA
Found at i:9136080 original size:28 final size:28
Alignment explanation
Indices: 9136048--9136117 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
9136038 TATGGTACTC
*
9136048 AGTGTACGAAATATTGAGAATGACACTT
1 AGTGTGCGAAATATTGAGAATGACACTT
* *
9136076 AGTGTGCGAGATATTGAGGATGACACTT
1 AGTGTGCGAAATATTGAGAATGACACTT
*
9136104 AGTGTGCAAAATAT
1 AGTGTGCGAAATAT
9136118 CGAATGATTC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.36, C:0.10, G:0.26, T:0.29
Consensus pattern (28 bp):
AGTGTGCGAAATATTGAGAATGACACTT
Found at i:9141659 original size:21 final size:22
Alignment explanation
Indices: 9141630--9141676 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
9141620 CAGAAGGAGT
*
9141630 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
9141652 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
9141673 GAGT
1 GAGT
9141677 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:9156923 original size:29 final size:29
Alignment explanation
Indices: 9156875--9156939 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 29
9156865 ACCGACCGAG
*
9156875 TTCGGTTAATCGGTCGGTTAACTGAAAAAA
1 TTCGG-TAATCGGTCGGTTAACCGAAAAAA
9156905 TTCGGTAATCGGTCGGTTAACCGAAAAAA
1 TTCGGTAATCGGTCGGTTAACCGAAAAAA
9156934 TTCGGT
1 TTCGGT
9156940 CGGGGTCGGT
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 29 0.85
30 5 0.15
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (29 bp):
TTCGGTAATCGGTCGGTTAACCGAAAAAA
Found at i:9157250 original size:9 final size:9
Alignment explanation
Indices: 9157236--9157261 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
9157226 TCTCCTCCCT
9157236 AATTTCACA
1 AATTTCACA
9157245 AATTTCACA
1 AATTTCACA
9157254 AATTTCAC
1 AATTTCAC
9157262 TTTCACACTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.42, C:0.23, G:0.00, T:0.35
Consensus pattern (9 bp):
AATTTCACA
Found at i:9161102 original size:24 final size:24
Alignment explanation
Indices: 9161045--9161103 Score: 91
Period size: 24 Copynumber: 2.5 Consensus size: 24
9161035 GGTTTAATGC
* *
9161045 AAATGGAGATATTTTGGAGAGATG
1 AAATGGATATATTTTGGAAAGATG
*
9161069 AAATGAATATATTTTGGAAAGATG
1 AAATGGATATATTTTGGAAAGATG
9161093 AAATGGATATA
1 AAATGGATATA
9161104 AATGGAGAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.44, C:0.00, G:0.25, T:0.31
Consensus pattern (24 bp):
AAATGGATATATTTTGGAAAGATG
Found at i:9161195 original size:20 final size:19
Alignment explanation
Indices: 9161169--9161233 Score: 62
Period size: 20 Copynumber: 3.4 Consensus size: 19
9161159 AATATTTTTA
9161169 ATTATGTAGTGATTCAAAG
1 ATTATGTAGTGATTCAAAG
* ***
9161188 ACTTATGTAAT-ATTTTTA-
1 A-TTATGTAGTGATTCAAAG
9161206 ATTATGTAGTGATTCAAAG
1 ATTATGTAGTGATTCAAAG
9161225 ATTTATGTA
1 A-TTATGTA
9161234 ATGTTTTTAA
Statistics
Matches: 34, Mismatches: 8, Indels: 7
0.69 0.16 0.14
Matches are distributed among these distances:
17 8 0.24
18 5 0.15
19 6 0.18
20 15 0.44
ACGTcount: A:0.35, C:0.05, G:0.15, T:0.45
Consensus pattern (19 bp):
ATTATGTAGTGATTCAAAG
Found at i:9161198 original size:37 final size:37
Alignment explanation
Indices: 9161144--9161256 Score: 192
Period size: 37 Copynumber: 3.1 Consensus size: 37
9161134 TTATGTTTTA
*
9161144 ATTC-AAGACTTGTGTAATATTTTTAATTATGTAGTG
1 ATTCAAAGACTTATGTAATATTTTTAATTATGTAGTG
9161180 ATTCAAAGACTTATGTAATATTTTTAATTATGTAGTG
1 ATTCAAAGACTTATGTAATATTTTTAATTATGTAGTG
* *
9161217 ATTCAAAGATTTATGTAATGTTTTTAATTATGTAGTG
1 ATTCAAAGACTTATGTAATATTTTTAATTATGTAGTG
9161254 ATT
1 ATT
9161257 TAATTCGGGT
Statistics
Matches: 73, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
36 4 0.05
37 69 0.95
ACGTcount: A:0.33, C:0.04, G:0.15, T:0.48
Consensus pattern (37 bp):
ATTCAAAGACTTATGTAATATTTTTAATTATGTAGTG
Done.