Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 35 of 255
Found at i:9161212 original size:17 final size:17
Alignment explanation
Indices: 9161156--9161250 Score: 55
Period size: 17 Copynumber: 5.2 Consensus size: 17
9161146 TCAAGACTTG
9161156 TGTAATATTTTTAATTA
1 TGTAATATTTTTAATTA
* ***
9161173 TGTAGTGATTCAAAGACTTA
1 TGTAAT-ATTTTTA-A-TTA
9161193 TGTAATATTTTTAATTA
1 TGTAATATTTTTAATTA
* ***
9161210 TGTAGTGATTCAAAGATTTA
1 TGTAAT-ATTTTTA-A-TTA
*
9161230 TGTAATGTTTTTAATTA
1 TGTAATATTTTTAATTA
9161247 TGTA
1 TGTA
9161251 GTGATTTAAT
Statistics
Matches: 55, Mismatches: 17, Indels: 12
0.65 0.20 0.14
Matches are distributed among these distances:
17 20 0.36
18 10 0.18
19 9 0.16
20 16 0.29
ACGTcount: A:0.34, C:0.03, G:0.14, T:0.49
Consensus pattern (17 bp):
TGTAATATTTTTAATTA
Found at i:9161271 original size:9 final size:9
Alignment explanation
Indices: 9161257--9161393 Score: 193
Period size: 9 Copynumber: 14.6 Consensus size: 9
9161247 TGTAGTGATT
9161257 TAATTCGGG
1 TAATTCGGG
9161266 TAATTCGGG
1 TAATTCGGG
9161275 TAATTTTCGGG
1 TAA--TTCGGG
9161286 TAATTTTCGGG
1 TAA--TTCGGG
*
9161297 TAATTTGGG
1 TAATTCGGG
9161306 TAATTTTCGGG
1 TAA--TTCGGG
9161317 TAATTCGGG
1 TAATTCGGG
9161326 TAATTCGGG
1 TAATTCGGG
9161335 TAATTCGGG
1 TAATTCGGG
*
9161344 TAAGTCGGG
1 TAATTCGGG
9161353 TAATTCGGG
1 TAATTCGGG
*
9161362 TAAGTCGGG
1 TAATTCGGG
9161371 TAATTCGGG
1 TAATTCGGG
9161380 TAATTCGGG
1 TAATTCGGG
9161389 TAATT
1 TAATT
9161394 TTTAACCAAA
Statistics
Matches: 118, Mismatches: 6, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
9 90 0.76
11 28 0.24
ACGTcount: A:0.22, C:0.09, G:0.32, T:0.36
Consensus pattern (9 bp):
TAATTCGGG
Found at i:9161531 original size:28 final size:27
Alignment explanation
Indices: 9161499--9161564 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 27
9161489 AAAATTCGGT
9161499 TCGGTTAACGGTTA-AAAAATTTGAGAGG
1 TCGGTTAACGGTTACAAAAATTT-AG-GG
* *
9161527 TCGGTTAATTCGGTTACAAGAATTTCGGG
1 TCGGTTAA--CGGTTACAAAAATTTAGGG
9161556 TCGGTTAAC
1 TCGGTTAAC
9161565 CGACTGAACA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
27 1 0.03
28 8 0.24
29 10 0.30
30 7 0.21
31 7 0.21
ACGTcount: A:0.29, C:0.12, G:0.27, T:0.32
Consensus pattern (27 bp):
TCGGTTAACGGTTACAAAAATTTAGGG
Found at i:9162413 original size:20 final size:20
Alignment explanation
Indices: 9162342--9162454 Score: 70
Period size: 20 Copynumber: 5.7 Consensus size: 20
9162332 TTGGCATACC
*
9162342 AAAATTTCTAA-GATTTTATT
1 AAAATTTCTAAGGA-TTTACT
* * * *
9162362 GAAGTTTATAAGG-TTATACC
1 AAAATTTCTAAGGATT-TACT
* *
9162382 AAAATATGTAAGGATTTACT
1 AAAATTTCTAAGGATTTACT
* *
9162402 AGAATTTTTAAGG-TTATACT
1 AAAATTTCTAAGGATT-TACT
*
9162422 AAAATTTCTAAGGATTTATT
1 AAAATTTCTAAGGATTTACT
* *
9162442 AATATATCTAAGG
1 AAAATTTCTAAGG
9162455 GTTTTTACCA
Statistics
Matches: 70, Mismatches: 18, Indels: 10
0.71 0.18 0.10
Matches are distributed among these distances:
19 4 0.06
20 61 0.87
21 5 0.07
ACGTcount: A:0.40, C:0.06, G:0.13, T:0.41
Consensus pattern (20 bp):
AAAATTTCTAAGGATTTACT
Found at i:9162454 original size:40 final size:39
Alignment explanation
Indices: 9162337--9162480 Score: 114
Period size: 40 Copynumber: 3.6 Consensus size: 39
9162327 ACATTTTGGC
9162337 ATACCAAAATTTCTAA-GATTTTATTGAAGT-TTATAAGGTT
1 ATACCAAAATTTCTAAGGA-TTTATT-AA-TATTATAAGGTT
* * * *
9162377 ATACCAAAATATGTAAGGATTTACTAGA-ATTTTTAAGGTT
1 ATACCAAAATTTCTAAGGATTTATTA-ATA-TTATAAGGTT
* *
9162417 ATACTAAAATTTCTAAGGATTTATTAATATATCTAAGGGTTT
1 ATACCAAAATTTCTAAGGATTTATTAATAT-TATAA-GG-TT
* * *
9162459 TTACCAAAATTTCAAAAGATTT
1 ATACCAAAATTTCTAAGGATTT
9162481 CCTTAGTGCC
Statistics
Matches: 83, Mismatches: 13, Indels: 14
0.75 0.12 0.13
Matches are distributed among these distances:
39 3 0.04
40 56 0.67
41 4 0.05
42 20 0.24
ACGTcount: A:0.40, C:0.08, G:0.12, T:0.40
Consensus pattern (39 bp):
ATACCAAAATTTCTAAGGATTTATTAATATTATAAGGTT
Found at i:9162547 original size:20 final size:21
Alignment explanation
Indices: 9162522--9162581 Score: 70
Period size: 20 Copynumber: 3.0 Consensus size: 21
9162512 TCTTGGCATG
9162522 CTAAAATTTCCAAGGATTT-T
1 CTAAAATTTCCAAGGATTTAT
* *
9162542 CTAAAATTTCTAAAGATTTAT
1 CTAAAATTTCCAAGGATTTAT
* *
9162563 C-AAAATTTACGAGGATTTA
1 CTAAAATTTCCAAGGATTTA
9162582 CAAAACTTTC
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
20 31 0.94
21 2 0.06
ACGTcount: A:0.40, C:0.12, G:0.10, T:0.38
Consensus pattern (21 bp):
CTAAAATTTCCAAGGATTTAT
Found at i:9162607 original size:40 final size:40
Alignment explanation
Indices: 9162524--9162608 Score: 93
Period size: 40 Copynumber: 2.1 Consensus size: 40
9162514 TTGGCATGCT
* * *
9162524 AAAATTTCCAAGGATTTTCTAAAATTTCTAAAGATTTATC
1 AAAATTTACAAGGATTTACTAAAATTTCTAAAGATTTACC
* *
9162564 AAAATTTACGAGGATTTAC-AAAACTTTCTAACG-TTATACC
1 AAAATTTACAAGGATTTACTAAAA-TTTCTAAAGATT-TACC
9162604 AAAAT
1 AAAAT
9162609 ACCTAACGGT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
39 6 0.16
40 32 0.84
ACGTcount: A:0.42, C:0.14, G:0.08, T:0.35
Consensus pattern (40 bp):
AAAATTTACAAGGATTTACTAAAATTTCTAAAGATTTACC
Found at i:9162616 original size:20 final size:20
Alignment explanation
Indices: 9162591--9162649 Score: 57
Period size: 20 Copynumber: 3.0 Consensus size: 20
9162581 ACAAAACTTT
9162591 CTAACGTTATACCAAAATAC
1 CTAACGTTATACCAAAATAC
* **
9162611 CTAACGGTT-TACCCAAATTT
1 CTAAC-GTTATACCAAAATAC
* *
9162631 CTAAAGTTATATCAAAATA
1 CTAACGTTATACCAAAATA
9162650 TTTATAGATT
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
19 3 0.10
20 24 0.80
21 3 0.10
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (20 bp):
CTAACGTTATACCAAAATAC
Found at i:9162669 original size:40 final size:40
Alignment explanation
Indices: 9162544--9162670 Score: 102
Period size: 40 Copynumber: 3.2 Consensus size: 40
9162534 AGGATTTTCT
*
9162544 AAAATTTCTAAAGATT-TATC-AAA-ATTTACGAGGATTT-AC
1 AAAATTTCTAAAG-TTATATCAAAATATTTA--ACGATTTAAC
* * ** * *
9162583 AAAACTTTCTAACGTTATACCAAAATACCTAACGGTTTACC
1 AAAA-TTTCTAAAGTTATATCAAAATATTTAACGATTTAAC
*
9162624 CAAATTTCTAAAGTTATATCAAAATATTTATA-GATTTAAC
1 AAAATTTCTAAAGTTATATCAAAATATTTA-ACGATTTAAC
9162664 AAAATTT
1 AAAATTT
9162671 AAATATCTAA
Statistics
Matches: 67, Mismatches: 15, Indels: 11
0.72 0.16 0.12
Matches are distributed among these distances:
39 6 0.09
40 50 0.75
41 8 0.12
42 3 0.04
ACGTcount: A:0.43, C:0.14, G:0.07, T:0.35
Consensus pattern (40 bp):
AAAATTTCTAAAGTTATATCAAAATATTTAACGATTTAAC
Found at i:9162781 original size:37 final size:37
Alignment explanation
Indices: 9162727--9162799 Score: 137
Period size: 37 Copynumber: 2.0 Consensus size: 37
9162717 TGATAAGTCC
9162727 TTAGATTTTTTTGATTGGCCAAAATGTTGAGTTGATT
1 TTAGATTTTTTTGATTGGCCAAAATGTTGAGTTGATT
*
9162764 TTAGATTTTTTTTATTGGCCAAAATGTTGAGTTGAT
1 TTAGATTTTTTTGATTGGCCAAAATGTTGAGTTGAT
9162800 CGAGTCTGGG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.25, C:0.05, G:0.21, T:0.49
Consensus pattern (37 bp):
TTAGATTTTTTTGATTGGCCAAAATGTTGAGTTGATT
Found at i:9162911 original size:20 final size:19
Alignment explanation
Indices: 9162888--9162950 Score: 63
Period size: 20 Copynumber: 3.2 Consensus size: 19
9162878 CTTAGAAATA
9162888 TTGGTATAACCTTAAAATTT
1 TTGGTA-AACCTTAAAATTT
* *
9162908 TTGGTAACGCCTTAAAAATT
1 TTGGTAA-ACCTTAAAATTT
* *
9162928 TTAGTAAATCCTTATAATTT
1 TTGGTAAA-CCTTAAAATTT
9162948 TTG
1 TTG
9162951 AAATTTACCA
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
19 1 0.03
20 33 0.97
ACGTcount: A:0.33, C:0.11, G:0.11, T:0.44
Consensus pattern (19 bp):
TTGGTAAACCTTAAAATTT
Found at i:9163033 original size:20 final size:20
Alignment explanation
Indices: 9162970--9163049 Score: 72
Period size: 20 Copynumber: 4.0 Consensus size: 20
9162960 ATTATGGCAG
* *
9162970 AACCTTATAAATTTTGATAA
1 AACCTTAGAAATTTTGGTAA
* * * * *
9162990 ATCCATGGATATTGTGGT-A
1 AACCTTAGAAATTTTGGTAA
9163009 AACCTTAGAAATTTTGGTAA
1 AACCTTAGAAATTTTGGTAA
* *
9163029 AACCTTAAAAATCTTGGTAA
1 AACCTTAGAAATTTTGGTAA
9163049 A
1 A
9163050 TATTGATATG
Statistics
Matches: 45, Mismatches: 14, Indels: 2
0.74 0.23 0.03
Matches are distributed among these distances:
19 14 0.31
20 31 0.69
ACGTcount: A:0.40, C:0.11, G:0.14, T:0.35
Consensus pattern (20 bp):
AACCTTAGAAATTTTGGTAA
Found at i:9165631 original size:108 final size:109
Alignment explanation
Indices: 9165475--9165756 Score: 345
Period size: 109 Copynumber: 2.6 Consensus size: 109
9165465 AAAAAATTTT
* * * *
9165475 AATTCTTTTAGGTGCTGGCCTTGTAATGGCTGGCACCAAGTACAAAAAAAATT-AATTTTTTTTA
1 AATT-TTTTA-GTTCTGGCCTTCTAATGGCCGGCACCAGGTACAAAAAAAATTCAATTTTTTTTA
* * *
9165539 AATGTTAGCCTTCTAATGGTCAGTACCAGACTACCAGTATTTA-AAA
64 AATGTTAGCCTTCTAATGGCCAGCACCA-ACTACCAATATTTACAAA
* *
9165585 AATTTTTTAGTTCTGGCCTTCTAATGGCCGGCACCAGGTACGAAAAAAATTCAAATTTTTTTTAG
1 AATTTTTTAGTTCTGGCCTTCTAATGGCCGGCACCAGGTACAAAAAAAATTC-AATTTTTTTTAA
* * * *
9165650 CTGTTGGCCTTCTAATGGCCTGCACCAAGTACCAATATTTACAAA
65 ATGTTAGCCTTCTAATGGCCAGCACCAACTACCAATATTTACAAA
*** * *
9165695 AAAAATTTA-TTCTGGCCTTCTAATGGCCGGCACCTGGTACAAAAAAAATTCAAATTTTTTTA
1 AATTTTTTAGTTCTGGCCTTCTAATGGCCGGCACCAGGTACAAAAAAAATTCAATTTTTTTTA
9165757 GGTGCTGACC
Statistics
Matches: 150, Mismatches: 19, Indels: 8
0.85 0.11 0.05
Matches are distributed among these distances:
108 47 0.31
109 57 0.38
110 46 0.31
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (109 bp):
AATTTTTTAGTTCTGGCCTTCTAATGGCCGGCACCAGGTACAAAAAAAATTCAATTTTTTTTAAA
TGTTAGCCTTCTAATGGCCAGCACCAACTACCAATATTTACAAA
Found at i:9165712 original size:109 final size:109
Alignment explanation
Indices: 9165489--9165788 Score: 356
Period size: 108 Copynumber: 2.8 Consensus size: 109
9165479 CTTTTAGGTG
* * * * *
9165489 CTGGCCTTGTAATGGCTGGCACCAAGTACAAAAAAAATT--AATTTTTTTTAAATGTTAGCCTTC
1 CTGGCCTTCTAATGGCCGGCACCAGGTACAAAAAAAATTCAAATTTTTTTTAGATGTTGGCCTTC
* * * * ***
9165552 TAATGGTCAGTACCAGACTACCAGTATTTAAAAAATTTTTTAGTT
66 TAATGGCCAGCACCA-AGTACCAATATTTAAAAAAAAATTTAGTT
* *
9165597 CTGGCCTTCTAATGGCCGGCACCAGGTACGAAAAAAATTCAAATTTTTTTTAGCTGTTGGCCTTC
1 CTGGCCTTCTAATGGCCGGCACCAGGTACAAAAAAAATTCAAATTTTTTTTAGATGTTGGCCTTC
*
9165662 TAATGGCCTGCACCAAGTACCAATATTTACAAAAAAAATTTA-TT
66 TAATGGCCAGCACCAAGTACCAATATTTA-AAAAAAAATTTAGTT
* * * *
9165706 CTGGCCTTCTAATGGCCGGCACCTGGTACAAAAAAAATTCAAA-TTTTTTTAGGTGCTGACCTTC
1 CTGGCCTTCTAATGGCCGGCACCAGGTACAAAAAAAATTCAAATTTTTTTTAGATGTTGGCCTTC
* * *
9165770 TACTTGCCGGCACCAAGTA
66 TAATGGCCAGCACCAAGTA
9165789 TGAAAAAAAA
Statistics
Matches: 166, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
108 69 0.42
109 55 0.33
110 42 0.25
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.32
Consensus pattern (109 bp):
CTGGCCTTCTAATGGCCGGCACCAGGTACAAAAAAAATTCAAATTTTTTTTAGATGTTGGCCTTC
TAATGGCCAGCACCAAGTACCAATATTTAAAAAAAAATTTAGTT
Found at i:9165888 original size:55 final size:56
Alignment explanation
Indices: 9165801--9165926 Score: 200
Period size: 57 Copynumber: 2.2 Consensus size: 56
9165791 AAAAAAAAAT
9165801 CCATTAGAAGGCCAGCACCTAAAAAAAATTGAA-TTTTTTTCGTACCTAGTGCCGG
1 CCATTAGAAGGCCAGCACCTAAAAAAAATTGAACTTTTTTTCGTACCTAGTGCCGG
* * * *
9165856 CCTTTAGAAGGCCAGCGCCTAAAAAAAATTGAACTTTTTTTTCGTACCTGGTGTCGG
1 CCATTAGAAGGCCAGCACCTAAAAAAAATTGAAC-TTTTTTTCGTACCTAGTGCCGG
9165913 CCATTAGAAGGCCA
1 CCATTAGAAGGCCA
9165927 AAATCATTTT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
55 31 0.48
57 33 0.52
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (56 bp):
CCATTAGAAGGCCAGCACCTAAAAAAAATTGAACTTTTTTTCGTACCTAGTGCCGG
Found at i:9166634 original size:40 final size:38
Alignment explanation
Indices: 9166569--9166644 Score: 98
Period size: 40 Copynumber: 1.9 Consensus size: 38
9166559 ATTAATTAAC
** * *
9166569 TTTTTAAATTTTTAAAAATTCAAAAAATTATAAAAATA
1 TTTTTAAAAATTTAAAAATTAAAAAAAGTATAAAAATA
9166607 TTTTTAAAAATTTAAAATTATTAAAAAAAGTATAAAAA
1 TTTTTAAAAATTTAAAA--ATTAAAAAAAGTATAAAAA
9166645 CTATATAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
38 15 0.47
40 17 0.53
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.39
Consensus pattern (38 bp):
TTTTTAAAAATTTAAAAATTAAAAAAAGTATAAAAATA
Found at i:9184980 original size:20 final size:20
Alignment explanation
Indices: 9184952--9184992 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
9184942 AGTTAGTAGA
*
9184952 AATTGGGTTAGTAAACTAAG
1 AATTAGGTTAGTAAACTAAG
*
9184972 AATTAGGTTAGTGAACTAAG
1 AATTAGGTTAGTAAACTAAG
9184992 A
1 A
9184993 GTTGTAACGC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.41, C:0.05, G:0.24, T:0.29
Consensus pattern (20 bp):
AATTAGGTTAGTAAACTAAG
Found at i:9186171 original size:41 final size:41
Alignment explanation
Indices: 9186126--9186204 Score: 131
Period size: 41 Copynumber: 1.9 Consensus size: 41
9186116 GACCACGTGG
* *
9186126 GTCACACGACCGTGTGGTAGGCCATGTGACAGACTGTGTAA
1 GTCACACGACCGTATGGCAGGCCATGTGACAGACTGTGTAA
*
9186167 GTCACACGACCGTATGGCAGGCCGTGTGACAGACTGTG
1 GTCACACGACCGTATGGCAGGCCATGTGACAGACTGTG
9186205 CGGATTACAC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.23, C:0.24, G:0.33, T:0.20
Consensus pattern (41 bp):
GTCACACGACCGTATGGCAGGCCATGTGACAGACTGTGTAA
Found at i:9186400 original size:82 final size:81
Alignment explanation
Indices: 9186284--9186439 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
9186274 GTAGCAGATC
* * *
9186284 GTGTAGGTCATACAACTATGTGGTAGGTTGTGTGGTAGACCGTGCCGGTCACAGGACCATATGGT
1 GTGTAGGTCATACAACTATGTAGTAGGCTATGTGGTAGACCGTG-CGGTCACAGGACCATATGGT
*
9186349 AATCCATGTGACAGACT
65 AAGCCATGTGACAGACT
* * *
9186366 GTGTAGGTCATACGAAC-ATGTAGTAGGCTATGTGGTAGACCGTGTGGTCACATGACCATGTGGT
1 GTGTAGGTCATAC-AACTATGTAGTAGGCTATGTGGTAGACCGTGCGGTCACAGGACCATATGGT
*
9186430 AGGCCATGTG
65 AAGCCATGTG
9186440 GCGATTATGT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 25 0.38
82 37 0.57
83 3 0.05
ACGTcount: A:0.24, C:0.17, G:0.32, T:0.27
Consensus pattern (81 bp):
GTGTAGGTCATACAACTATGTAGTAGGCTATGTGGTAGACCGTGCGGTCACAGGACCATATGGTA
AGCCATGTGACAGACT
Found at i:9191563 original size:26 final size:22
Alignment explanation
Indices: 9191512--9191571 Score: 61
Period size: 26 Copynumber: 2.6 Consensus size: 22
9191502 TTTCCACTAT
9191512 TACTT-TTATTTTCTTTATTTA
1 TACTTGTTATTTTCTTTATTTA
9191533 T-CTTGTTATTTTGCTTTAATCGTTA
1 TACTTGTTATTTT-CTTT-AT--TTA
*
9191558 TACTTGCTATTTTC
1 TACTTGTTATTTTC
9191572 ATGCTTTTTG
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
20 3 0.09
21 8 0.25
22 4 0.12
23 2 0.06
25 5 0.16
26 10 0.31
ACGTcount: A:0.17, C:0.13, G:0.07, T:0.63
Consensus pattern (22 bp):
TACTTGTTATTTTCTTTATTTA
Found at i:9194385 original size:31 final size:31
Alignment explanation
Indices: 9194350--9194410 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
9194340 ACAACCCAAC
9194350 GACTTAAATAAAAACTATTGAATAATTCAAT
1 GACTTAAATAAAAACTATTGAATAATTCAAT
* * * *
9194381 GACTTAAATGAGAACTTTTGAATAGTTCAA
1 GACTTAAATAAAAACTATTGAATAATTCAA
9194411 AGACCAAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.46, C:0.10, G:0.11, T:0.33
Consensus pattern (31 bp):
GACTTAAATAAAAACTATTGAATAATTCAAT
Found at i:9199077 original size:30 final size:30
Alignment explanation
Indices: 9199043--9199129 Score: 79
Period size: 29 Copynumber: 2.9 Consensus size: 30
9199033 AATTTTAAAA
9199043 TTTTAAAATAATAAAGATAAAATTATAT-T
1 TTTTAAAATAATAAAGATAAAATTATATGT
* * * **
9199072 TTTTTAAATTATAAAAATATTATT-TAATGT
1 TTTTAAAATAATAAAGATAAAATTAT-ATGT
* *
9199102 TTTAAAAATGATAAAGATAAAAATTATA
1 TTTTAAAATAATAAAGAT-AAAATTATA
9199130 AAAAATTAAA
Statistics
Matches: 43, Mismatches: 11, Indels: 6
0.72 0.18 0.10
Matches are distributed among these distances:
28 1 0.02
29 21 0.49
30 15 0.35
31 5 0.12
32 1 0.02
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.43
Consensus pattern (30 bp):
TTTTAAAATAATAAAGATAAAATTATATGT
Found at i:9200605 original size:8 final size:8
Alignment explanation
Indices: 9200579--9200696 Score: 58
Period size: 8 Copynumber: 13.6 Consensus size: 8
9200569 TTCCTCATAA
*
9200579 AAAAATTT
1 AAAAATAT
*
9200587 AAAATTCAT
1 AAAAAT-AT
9200596 AAAAATAT
1 AAAAATAT
9200604 AAAAA-ATT
1 AAAAATA-T
*
9200612 AAAATTTAT
1 AAAA-ATAT
9200621 AAAAATAT
1 AAAAATAT
9200629 AAAAATTATT
1 AAAAA-TA-T
** *
9200639 AAACTTAA
1 AAAAATAT
9200647 AAAAATATT
1 AAAAATA-T
9200656 AAAATTGATAT
1 AAAA---ATAT
**
9200667 AAACTTAT
1 AAAAATAT
9200675 AAAAATTAT
1 AAAAA-TAT
*
9200684 AAAAACAT
1 AAAAATAT
9200692 AAAAA
1 AAAAA
9200697 AATCTAATAA
Statistics
Matches: 83, Mismatches: 16, Indels: 22
0.69 0.13 0.18
Matches are distributed among these distances:
7 1 0.01
8 43 0.52
9 27 0.33
10 5 0.06
11 4 0.05
12 3 0.04
ACGTcount: A:0.65, C:0.03, G:0.01, T:0.31
Consensus pattern (8 bp):
AAAAATAT
Found at i:9200609 original size:19 final size:19
Alignment explanation
Indices: 9200573--9200611 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
9200563 AAATATTTCC
**
9200573 TCATAAAAAAATTTAAAAT
1 TCATAAAAAAATAAAAAAT
*
9200592 TCATAAAAATATAAAAAAT
1 TCATAAAAAAATAAAAAAT
9200611 T
1 T
9200612 AAAATTTATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (19 bp):
TCATAAAAAAATAAAAAAT
Found at i:9200621 original size:17 final size:18
Alignment explanation
Indices: 9200587--9200696 Score: 59
Period size: 17 Copynumber: 6.2 Consensus size: 18
9200577 AAAAAAATTT
*
9200587 AAAATTCATAAAAATATA
1 AAAATTTATAAAAATATA
* **
9200605 AAAAATTA-AAATTTATA
1 AAAATTTATAAAAATATA
9200622 AAAA--TATAAAAAT-TA
1 AAAATTTATAAAAATATA
* * * *
9200637 TTAAACTTAAAAAAATATT
1 -AAAATTTATAAAAATATA
**
9200656 AAAATTGATATAAACTTATA
1 AAAATT--TATAAAAATATA
*
9200676 AAAA-TTATAAAAACATA
1 AAAATTTATAAAAATATA
9200693 AAAA
1 AAAA
9200697 AATCTAATAA
Statistics
Matches: 67, Mismatches: 18, Indels: 15
0.67 0.18 0.15
Matches are distributed among these distances:
15 4 0.06
16 7 0.10
17 24 0.36
18 18 0.27
19 2 0.03
20 12 0.18
ACGTcount: A:0.65, C:0.04, G:0.01, T:0.30
Consensus pattern (18 bp):
AAAATTTATAAAAATATA
Found at i:9200625 original size:26 final size:26
Alignment explanation
Indices: 9200578--9200688 Score: 111
Period size: 26 Copynumber: 4.2 Consensus size: 26
9200568 TTTCCTCATA
*
9200578 AAAAAATT-TAAAATTCATAAAAATAT
1 AAAAAATTATAAACTT-ATAAAAATAT
*
9200604 AAAAAATTA-AAATTTATAAAAATAT
1 AAAAAATTATAAACTTATAAAAATAT
*
9200629 -AAAAATTATTAAACTTAAAAAAATAT
1 AAAAAATTA-TAAACTTATAAAAATAT
* *
9200655 TAAAATTGATATAAACTTATAAAAATTAT
1 AAAAAAT--TATAAACTTATAAAAA-TAT
9200684 AAAAA
1 AAAAA
9200689 CATAAAAAAA
Statistics
Matches: 72, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
24 8 0.11
25 10 0.14
26 27 0.38
27 5 0.07
28 13 0.18
29 9 0.12
ACGTcount: A:0.65, C:0.03, G:0.01, T:0.32
Consensus pattern (26 bp):
AAAAAATTATAAACTTATAAAAATAT
Found at i:9200744 original size:22 final size:20
Alignment explanation
Indices: 9200719--9200777 Score: 57
Period size: 22 Copynumber: 2.8 Consensus size: 20
9200709 TATGAAGAAT
9200719 TTTATAAAATTAATAAAACTTA
1 TTTA-AAAATT-ATAAAACTTA
*
9200741 TTTAAAATTTTATAAAAACTTA
1 TTTAAAA-ATTAT-AAAACTTA
*
9200763 -ATAAAAATTATAAAA
1 TTTAAAAATTATAAAA
9200778 AAAATCATAA
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
19 4 0.12
20 4 0.12
21 10 0.31
22 14 0.44
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (20 bp):
TTTAAAAATTATAAAACTTA
Found at i:9200778 original size:9 final size:9
Alignment explanation
Indices: 9200579--9200778 Score: 99
Period size: 9 Copynumber: 21.6 Consensus size: 9
9200569 TTCCTCATAA
9200579 AAAAATT-T
1 AAAAATTAT
9200587 -AAAATTCAT
1 AAAAATT-AT
9200596 AAAAA-TAT
1 AAAAATTAT
*
9200604 AAAAAAT-T
1 AAAAATTAT
*
9200612 AAAATTTAT
1 AAAAATTAT
9200621 AAAAA-TAT
1 AAAAATTAT
9200629 AAAAATTAT
1 AAAAATTAT
* *
9200638 TAAACTTA-
1 AAAAATTAT
*
9200646 AAAAAATAT
1 AAAAATTAT
*
9200655 TAAAATTGAT
1 AAAAATT-AT
*
9200665 ATAAACTTAT
1 A-AAAATTAT
9200675 AAAAATTAT
1 AAAAATTAT
* *
9200684 AAAAACATAA
1 AAAAA-TTAT
9200694 AAAAATCTA-
1 AAAAAT-TAT
* *
9200703 ATAATTTAT
1 AAAAATTAT
* *
9200712 GAAGAATTTT
1 -AAAAATTAT
9200722 ATAAAATTAAT
1 A-AAAATT-AT
*
9200733 AAAACTTATTT
1 AAAAATTA--T
*
9200744 AAAATTTTAT
1 AAAA-ATTAT
9200754 AAAAACTTAAT
1 AAAAA-TT-AT
9200765 AAAAATTAT
1 AAAAATTAT
9200774 AAAAA
1 AAAAA
9200779 AAATCATAAA
Statistics
Matches: 145, Mismatches: 27, Indels: 39
0.69 0.13 0.18
Matches are distributed among these distances:
7 6 0.04
8 28 0.19
9 47 0.32
10 42 0.29
11 19 0.13
12 3 0.02
ACGTcount: A:0.61, C:0.04, G:0.01, T:0.34
Consensus pattern (9 bp):
AAAAATTAT
Found at i:9200779 original size:22 final size:22
Alignment explanation
Indices: 9200733--9200780 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
9200723 TAAAATTAAT
* * * *
9200733 AAAACTTATTTAAAATTTTATA
1 AAAACTTAATAAAAATTATAAA
9200755 AAAACTTAATAAAAATTATAAA
1 AAAACTTAATAAAAATTATAAA
9200777 AAAA
1 AAAA
9200781 ATCATAAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.33
Consensus pattern (22 bp):
AAAACTTAATAAAAATTATAAA
Found at i:9204160 original size:21 final size:21
Alignment explanation
Indices: 9204115--9204164 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
9204105 CTAAGATGTG
* *
9204115 AATTGGATTAAATTGAATTTG
1 AATTGTATTAAATTGAATTTA
9204136 AATTGTATTAAATTG-ATGTTA
1 AATTGTATTAAATTGAAT-TTA
9204157 AATT-TATT
1 AATTGTATT
9204165 CATATATATC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 6 0.23
21 20 0.77
ACGTcount: A:0.38, C:0.00, G:0.14, T:0.48
Consensus pattern (21 bp):
AATTGTATTAAATTGAATTTA
Found at i:9204772 original size:24 final size:24
Alignment explanation
Indices: 9204740--9204856 Score: 69
Period size: 25 Copynumber: 4.7 Consensus size: 24
9204730 ACCTTTCCGA
9204740 TATTGGCTCGTATGAGCTTCCCGT
1 TATTGGCTCGTATGAGCTTCCCGT
* *
9204764 TATTGGCTC-TCCA-GAGTTTTCCGT
1 TATTGGCTCGT--ATGAGCTTCCCGT
* **
9204788 TACATGGCTCACATGAGCTTCCCGT
1 TA-TTGGCTCGTATGAGCTTCCCGT
* * *
9204813 TATATGGCTAGAGAGAGAGCTTCCCGT
1 TAT-TGGCTCG-TA-TGAGCTTCCCGT
9204840 T-TATGTGCTCGTATGAG
1 TAT-TG-GCTCGTATGAG
9204857 TATTCCCGAA
Statistics
Matches: 70, Mismatches: 14, Indels: 17
0.69 0.14 0.17
Matches are distributed among these distances:
23 1 0.01
24 21 0.30
25 26 0.37
26 6 0.09
27 16 0.23
ACGTcount: A:0.18, C:0.23, G:0.25, T:0.34
Consensus pattern (24 bp):
TATTGGCTCGTATGAGCTTCCCGT
Found at i:9204812 original size:25 final size:25
Alignment explanation
Indices: 9204751--9204821 Score: 74
Period size: 25 Copynumber: 2.8 Consensus size: 25
9204741 ATTGGCTCGT
* *
9204751 ATGAGCTTCCCGTTATTGGCTCTCC
1 ATGAGCTTCCCGTTAATGGCTCTAC
* *
9204776 A-GAGTTTTCCGTTACATGGCTC-AC
1 ATGAGCTTCCCGTTA-ATGGCTCTAC
9204800 ATGAGCTTCCCGTTATATGGCT
1 ATGAGCTTCCCGTTA-ATGGCT
9204822 AGAGAGAGAG
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
24 13 0.35
25 24 0.65
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (25 bp):
ATGAGCTTCCCGTTAATGGCTCTAC
Found at i:9207170 original size:31 final size:31
Alignment explanation
Indices: 9207132--9207197 Score: 98
Period size: 31 Copynumber: 2.1 Consensus size: 31
9207122 TCAACTGAAC
9207132 TTTTTTATAATATTT-ATAAGTTTTTAAGATT
1 TTTTTTATAAT-TTTGATAAGTTTTTAAGATT
* *
9207163 TTTTTTATGATTTTGATAAGTTTTTATGATT
1 TTTTTTATAATTTTGATAAGTTTTTAAGATT
9207194 TTTT
1 TTTT
9207198 ATAAGTTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
30 3 0.09
31 29 0.91
ACGTcount: A:0.26, C:0.00, G:0.09, T:0.65
Consensus pattern (31 bp):
TTTTTTATAATTTTGATAAGTTTTTAAGATT
Found at i:9207186 original size:20 final size:21
Alignment explanation
Indices: 9207163--9207207 Score: 67
Period size: 19 Copynumber: 2.2 Consensus size: 21
9207153 TTTTAAGATT
9207163 TTTTTTATGA-TTTTGATAAG
1 TTTTTTATGATTTTTGATAAG
*
9207183 -TTTTTATGATTTTTTATAAG
1 TTTTTTATGATTTTTGATAAG
9207203 TTTTT
1 TTTTT
9207208 ATAAAATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 9 0.41
20 9 0.41
21 4 0.18
ACGTcount: A:0.22, C:0.00, G:0.11, T:0.67
Consensus pattern (21 bp):
TTTTTTATGATTTTTGATAAG
Found at i:9207187 original size:11 final size:10
Alignment explanation
Indices: 9207133--9207295 Score: 70
Period size: 10 Copynumber: 16.3 Consensus size: 10
9207123 CAACTGAACT
9207133 TTTTTATAA-
1 TTTTTATAAG
*
9207142 TATTTATAAG
1 TTTTTATAAG
*
9207152 TTTTTA-AGAT
1 TTTTTATA-AG
* *
9207162 TTTTTTTATG
1 TTTTTATAAG
*
9207172 ATTTTGATAAG
1 -TTTTTATAAG
* *
9207183 TTTTTATGAT
1 TTTTTATAAG
9207193 TTTTTATAAG
1 TTTTTATAAG
*
9207203 TTTTTATAAA
1 TTTTTATAAG
* *
9207213 ATTTTA-AATA
1 TTTTTATAA-G
9207223 TGTTTTATTAA-
1 T-TTTTA-TAAG
*
9207234 -TTTTATTAAA
1 TTTTTA-TAAG
*
9207244 CTTTTATAA-
1 TTTTTATAAG
* *
9207253 TATTTATAAA
1 TTTTTATAAG
* *
9207263 TTTTTATTAT
1 TTTTTATAAG
9207273 TTTATTATAA-
1 TTT-TTATAAG
9207283 TTTTTATAAG
1 TTTTTATAAG
9207293 TTT
1 TTT
9207296 ATATCAATTT
Statistics
Matches: 118, Mismatches: 23, Indels: 25
0.71 0.14 0.15
Matches are distributed among these distances:
9 33 0.28
10 60 0.51
11 23 0.19
13 2 0.02
ACGTcount: A:0.33, C:0.01, G:0.06, T:0.61
Consensus pattern (10 bp):
TTTTTATAAG
Found at i:9207217 original size:20 final size:20
Alignment explanation
Indices: 9207134--9207291 Score: 89
Period size: 20 Copynumber: 7.9 Consensus size: 20
9207124 AACTGAACTT
*
9207134 TTTTAT-AATATTTATAAGT-
1 TTTTATAAATTTTTATAA-TA
* * *
9207153 TTTTA-AGATTTTTTTTATGA
1 TTTTATAAATTTTTATAAT-A
* * *
9207173 TTTTGATAAGTTTTTATGATT
1 TTTT-ATAAATTTTTATAATA
* *
9207194 TTTTATAAGTTTTTATAAAA
1 TTTTATAAATTTTTATAATA
*
9207214 TTTTA-AATATGTTTTATTA-A
1 TTTTATAA-AT-TTTTATAATA
*
9207234 TTTTATTAAACTTTTATAATA
1 TTTTA-TAAATTTTTATAATA
9207255 -TTTATAAATTTTTAT--TA
1 TTTTATAAATTTTTATAATA
9207272 TTTTATTATAATTTTTATAA
1 TTTTA-TA-AATTTTTATAA
9207292 GTTTATATCA
Statistics
Matches: 107, Mismatches: 17, Indels: 27
0.71 0.11 0.18
Matches are distributed among these distances:
17 2 0.02
18 5 0.05
19 26 0.24
20 49 0.46
21 14 0.13
22 11 0.10
ACGTcount: A:0.34, C:0.01, G:0.05, T:0.61
Consensus pattern (20 bp):
TTTTATAAATTTTTATAATA
Found at i:9207296 original size:20 final size:21
Alignment explanation
Indices: 9207178--9207316 Score: 80
Period size: 20 Copynumber: 6.9 Consensus size: 21
9207168 TATGATTTTG
* *
9207178 ATAAGTTTTTATGATTTT-TT
1 ATAAATTTTTATAATTTTATT
* **
9207198 ATAAGTTTTTATAAAATT-TT
1 ATAAATTTTTATAATTTTATT
9207218 A-AATATGTTTTATTAATTTTA-T
1 ATAA-AT-TTTTA-TAATTTTATT
* *
9207240 -TAAACTTTTATAA-TAT-TT
1 ATAAATTTTTATAATTTTATT
*
9207258 ATAAATTTTTATTATTTTATT
1 ATAAATTTTTATAATTTTATT
*
9207279 AT-AATTTTTATAAGTTTA-T
1 ATAAATTTTTATAATTTTATT
* * *
9207298 ATCAATTTTAATATTTTTA
1 ATAAATTTTTATAATTTTA
9207317 AATTTAATAA
Statistics
Matches: 93, Mismatches: 16, Indels: 20
0.72 0.12 0.16
Matches are distributed among these distances:
18 3 0.03
19 19 0.20
20 53 0.57
21 10 0.11
22 8 0.09
ACGTcount: A:0.35, C:0.01, G:0.04, T:0.60
Consensus pattern (21 bp):
ATAAATTTTTATAATTTTATT
Found at i:9207307 original size:39 final size:38
Alignment explanation
Indices: 9207165--9207291 Score: 107
Period size: 39 Copynumber: 3.2 Consensus size: 38
9207155 TTAAGATTTT
* * * *
9207165 TTTTATGAT-TTTGATAAGTTTTTATGATTTT-TTATAAGT
1 TTTTATAATATTT-ATAAATTTTTATTATTTTATTA-AA-C
*
9207204 TTTTATAAAATTT-TAAATATGTTTTATTAATTTTATTAAAC
1 TTTTATAATATTTAT-AA-AT-TTTTATT-ATTTTATTAAAC
*
9207245 TTTTATAATATTTATAAATTTTTATTATTTTATTATAAT
1 TTTTATAATATTTATAAATTTTTATTATTTTATTA-AAC
9207284 TTTTATAA
1 TTTTATAA
9207292 GTTTATATCA
Statistics
Matches: 73, Mismatches: 7, Indels: 16
0.76 0.07 0.17
Matches are distributed among these distances:
38 10 0.14
39 26 0.36
40 6 0.08
41 20 0.27
42 8 0.11
43 3 0.04
ACGTcount: A:0.34, C:0.01, G:0.05, T:0.61
Consensus pattern (38 bp):
TTTTATAATATTTATAAATTTTTATTATTTTATTAAAC
Found at i:9216498 original size:50 final size:50
Alignment explanation
Indices: 9216423--9216599 Score: 273
Period size: 50 Copynumber: 3.5 Consensus size: 50
9216413 CCATGGCAGC
* *
9216423 AAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* *
9216473 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTAATCAAGGACAAGTGA
1 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* *
9216523 AAGTGATAAGTGATAGTTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* *
9216573 CAAGTGAAAAGTAGTAGCTTCGGCTAC
1 -AAGTGATAAGTAATAGCTTCGGCTAC
9216600 CTGATCAGTG
Statistics
Matches: 114, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
50 92 0.81
51 22 0.19
ACGTcount: A:0.37, C:0.16, G:0.21, T:0.26
Consensus pattern (50 bp):
AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:9216613 original size:31 final size:31
Alignment explanation
Indices: 9216575--9216723 Score: 199
Period size: 31 Copynumber: 4.8 Consensus size: 31
9216565 ACAAATGACA
*
9216575 AGTGAAAAGTAGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
9216606 AGTGAAAAGTGGTAGCTTCTGCTACTTGATT
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
9216637 AGTGAAAAGTGGTAGCTCCGACTACCTAATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
9216668 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
9216699 AGTGAATAGTGGTAGCTTTGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
9216724 AAGTGACAAG
Statistics
Matches: 101, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 101 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:9216894 original size:49 final size:48
Alignment explanation
Indices: 9216823--9216954 Score: 186
Period size: 49 Copynumber: 2.9 Consensus size: 48
9216813 GCACCAGTGA
* * *
9216823 GATATGTGATTCGTGTAAGACCATAGCTGGGCTACGGCATTGATATGT
1 GATATGTGATTCGTGTAAGACCATAGCTGGGCTATGGCATCGATATAT
9216871 GATATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCGATATAT
1 GATATGTGATT-CGTGTAAGACCATAGCTGGGCTATGGCATCGATATAT
9216920 GA-A--T-A-T-GTGTAAGACCATAGCTGGGCTATGGCATC
1 GATATGTGATTCGTGTAAGACCATAGCTGGGCTATGGCATC
9216955 ATTATGTGAA
Statistics
Matches: 80, Mismatches: 3, Indels: 8
0.88 0.03 0.09
Matches are distributed among these distances:
42 29 0.36
44 1 0.01
45 1 0.01
46 1 0.01
48 12 0.15
49 36 0.45
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (48 bp):
GATATGTGATTCGTGTAAGACCATAGCTGGGCTATGGCATCGATATAT
Found at i:9216930 original size:42 final size:43
Alignment explanation
Indices: 9216835--9216998 Score: 172
Period size: 42 Copynumber: 3.7 Consensus size: 43
9216825 TATGTGATTC
* * *
9216835 GTGTAAGACCATAGCTGGGCTACGGCATTGATATGTGATATG-TGATT
1 GTGTAAGACCATAGCTGGGCTATGGCATCG--AT-T-ATATGAAGA-T
*
9216882 ACGTGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAATAT
1 --GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
*
9216926 GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
* **
9216968 GTGTAAGACCATAGTTGAACTATGGCATCGA
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA
9216999 GAAAACGAAG
Statistics
Matches: 103, Mismatches: 9, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
41 1 0.01
42 64 0.62
43 1 0.01
44 6 0.06
45 2 0.02
47 1 0.01
49 28 0.27
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (43 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
Found at i:9222361 original size:30 final size:30
Alignment explanation
Indices: 9222327--9222385 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
9222317 TTCAAGAGAT
*
9222327 AGGCTATTATGAGCTTAACCAAGAAGCTGG
1 AGGCTATAATGAGCTTAACCAAGAAGCTGG
*
9222357 AGGCTATAATGAGCTTAGCCAAGAAGCTG
1 AGGCTATAATGAGCTTAACCAAGAAGCTG
9222386 AAGACATTTC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.34, C:0.17, G:0.27, T:0.22
Consensus pattern (30 bp):
AGGCTATAATGAGCTTAACCAAGAAGCTGG
Found at i:9223748 original size:21 final size:21
Alignment explanation
Indices: 9223722--9223761 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
9223712 TAACATAACG
*
9223722 ATAATATTTTAGTTACAAATA
1 ATAATATATTAGTTACAAATA
*
9223743 ATAATATATTGGTTACAAA
1 ATAATATATTAGTTACAAA
9223762 ATGAAATTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.47, C:0.05, G:0.07, T:0.40
Consensus pattern (21 bp):
ATAATATATTAGTTACAAATA
Found at i:9227119 original size:29 final size:30
Alignment explanation
Indices: 9227082--9227151 Score: 97
Period size: 29 Copynumber: 2.3 Consensus size: 30
9227072 ATTTTAATAT
*
9227082 ATTATATTTTTATAATTTTTAAAG-ATTAA
1 ATTAAATTTTTATAATTTTTAAAGAATTAA
*
9227111 ATTAAATTTTTATCATTTTTAAAGAATTAA
1 ATTAAATTTTTATAATTTTTAAAGAATTAA
*
9227141 AGTACAATTTT
1 ATTA-AATTTT
9227152 ACTATTATTA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
29 22 0.61
30 8 0.22
31 6 0.17
ACGTcount: A:0.41, C:0.03, G:0.04, T:0.51
Consensus pattern (30 bp):
ATTAAATTTTTATAATTTTTAAAGAATTAA
Found at i:9229372 original size:19 final size:20
Alignment explanation
Indices: 9229341--9229379 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
9229331 CATCAGTTGA
9229341 TTGGAAGAAAGAATAAAAAT
1 TTGGAAGAAAGAATAAAAAT
*
9229361 TTGGAA-AAAGAATGAAAAT
1 TTGGAAGAAAGAATAAAAAT
9229380 AAAATAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.59, C:0.00, G:0.21, T:0.21
Consensus pattern (20 bp):
TTGGAAGAAAGAATAAAAAT
Found at i:9231087 original size:131 final size:132
Alignment explanation
Indices: 9230925--9231176 Score: 278
Period size: 131 Copynumber: 1.9 Consensus size: 132
9230915 ATCGGACATC
*
9230925 GCCTTCGTTTTGAAAGGTTTTTAATAAACATGAATGAAAACCTAAAGGAATATTCAATTGTTTTG
1 GCCTTCGTTTTGAAAGGTTTTTAATAAACATGAATGAAAACCTAAAGGAATATTCAATTATTTT-
* * *
9230990 AA-CAAACGAGAAATCACAACCCAGCACGATAGGGCATGATT-CTCGAATTATCAAACACCGAGT
65 AAGCAAACGAGAAATCACAACCCAGCACGATAGGGCACGATTCCGCGAATTACCAAACACCGAGT
9231053 ATT
130 ATT
* * ** *** * * **
9231056 GCCTTCGTTTT-AAAGGATTTTTGGA-AGACATGTGTGAAATTTTGAAGGGATATTTGATTATTT
1 GCCTTCGTTTTGAAAGG-TTTTT-AATAAACATGAATGAAAACCTAAAGGAATATTCAATTATTT
* ** *
9231119 TAAGCAAACGGGAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTACCAAA
64 TAAGCAAACGAGAAATCACAACCCAGCACGATAGGGCACGATTCCGCGAATTACCAAA
9231177 TATCGCATAT
Statistics
Matches: 98, Mismatches: 19, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
130 7 0.07
131 78 0.80
132 13 0.13
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.29
Consensus pattern (132 bp):
GCCTTCGTTTTGAAAGGTTTTTAATAAACATGAATGAAAACCTAAAGGAATATTCAATTATTTTA
AGCAAACGAGAAATCACAACCCAGCACGATAGGGCACGATTCCGCGAATTACCAAACACCGAGTA
TT
Found at i:9235926 original size:27 final size:27
Alignment explanation
Indices: 9235895--9235955 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 27
9235885 TATGAATCCT
*
9235895 GAACCTAAAATCCCAAACCTTGAA-CTC
1 GAACCTAAAA-CCCAAACCTTAAACCTC
**
9235922 GAACCCTAAAACTTAAACCTTAAACCTC
1 GAA-CCTAAAACCCAAACCTTAAACCTC
9235950 GAACCT
1 GAACCT
9235956 TGCGGTTCAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
27 16 0.55
28 13 0.45
ACGTcount: A:0.41, C:0.33, G:0.07, T:0.20
Consensus pattern (27 bp):
GAACCTAAAACCCAAACCTTAAACCTC
Found at i:9235929 original size:28 final size:28
Alignment explanation
Indices: 9235898--9235954 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
9235888 GAATCCTGAA
*
9235898 CCTAAAATCCCAAACCTTGAA-CTCGAAC
1 CCTAAAA-CCCAAACCTTAAACCTCGAAC
**
9235926 CCTAAAACTTAAACCTTAAACCTCGAAC
1 CCTAAAACCCAAACCTTAAACCTCGAAC
9235954 C
1 C
9235955 TTGCGGTTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 10 0.40
28 15 0.60
ACGTcount: A:0.40, C:0.35, G:0.05, T:0.19
Consensus pattern (28 bp):
CCTAAAACCCAAACCTTAAACCTCGAAC
Found at i:9236887 original size:30 final size:32
Alignment explanation
Indices: 9236828--9236894 Score: 93
Period size: 30 Copynumber: 2.2 Consensus size: 32
9236818 TAGTAAAAGT
* * *
9236828 AAAATTGTATTTTAATTTTTTTTAAAATTATA
1 AAAATTGTAATTTAATTTCTTTAAAAATTATA
9236860 AAAATT-TAATTTAA-TTCTTTAAAAATTATA
1 AAAATTGTAATTTAATTTCTTTAAAAATTATA
9236890 AAAAT
1 AAAAT
9236895 ATAGACTATT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
30 19 0.59
31 7 0.22
32 6 0.19
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (32 bp):
AAAATTGTAATTTAATTTCTTTAAAAATTATA
Found at i:9240070 original size:30 final size:30
Alignment explanation
Indices: 9240026--9240084 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
9240016 TCCGAGCCTT
9240026 GGGGAAAAAGTGTAAATATGTAAAAGTTTA
1 GGGGAAAAAGTGTAAATATGTAAAAGTTTA
* * *
9240056 GGGGCAAAAA-TGTAATTTTGTCAAAGTTT
1 GGGG-AAAAAGTGTAAATATGTAAAAGTTT
9240085 GAGTCAAGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.41, C:0.03, G:0.25, T:0.31
Consensus pattern (30 bp):
GGGGAAAAAGTGTAAATATGTAAAAGTTTA
Found at i:9242651 original size:82 final size:82
Alignment explanation
Indices: 9242514--9242759 Score: 492
Period size: 82 Copynumber: 3.0 Consensus size: 82
9242504 CTAAAAGTAA
9242514 GAAAATATAGAAGCATTTACGAATTCTGGAGCATGGTGTTCAGTTACTTCAGTACCAAACCAATA
1 GAAAATATAGAAGCATTTACGAATTCTGGAGCATGGTGTTCAGTTACTTCAGTACCAAACCAATA
9242579 CCATTAAATTAAGATAT
66 CCATTAAATTAAGATAT
9242596 GAAAATATAGAAGCATTTACGAATTCTGGAGCATGGTGTTCAGTTACTTCAGTACCAAACCAATA
1 GAAAATATAGAAGCATTTACGAATTCTGGAGCATGGTGTTCAGTTACTTCAGTACCAAACCAATA
9242661 CCATTAAATTAAGATAT
66 CCATTAAATTAAGATAT
9242678 GAAAATATAGAAGCATTTACGAATTCTGGAGCATGGTGTTCAGTTACTTCAGTACCAAACCAATA
1 GAAAATATAGAAGCATTTACGAATTCTGGAGCATGGTGTTCAGTTACTTCAGTACCAAACCAATA
9242743 CCATTAAATTAAGATAT
66 CCATTAAATTAAGATAT
9242760 CTACCTTAAT
Statistics
Matches: 164, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
82 164 1.00
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (82 bp):
GAAAATATAGAAGCATTTACGAATTCTGGAGCATGGTGTTCAGTTACTTCAGTACCAAACCAATA
CCATTAAATTAAGATAT
Found at i:9245896 original size:18 final size:16
Alignment explanation
Indices: 9245873--9245907 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
9245863 AATTTAACTT
9245873 TAATTAAATTATTTAAAA
1 TAATT-AATT-TTTAAAA
9245891 TAATTAATTTTTAAAA
1 TAATTAATTTTTAAAA
9245907 T
1 T
9245908 TATAAACAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
17 4 0.24
18 5 0.29
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
TAATTAATTTTTAAAA
Found at i:9246096 original size:20 final size:20
Alignment explanation
Indices: 9246071--9246108 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
9246061 TTTTACCATG
9246071 AACCCTGAACCTTAAACTCA
1 AACCCTGAACCTTAAACTCA
9246091 AACCCTGAACCTTAAACT
1 AACCCTGAACCTTAAACT
9246109 TTGAACCTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.39, C:0.34, G:0.05, T:0.21
Consensus pattern (20 bp):
AACCCTGAACCTTAAACTCA
Found at i:9246166 original size:27 final size:26
Alignment explanation
Indices: 9246129--9246185 Score: 69
Period size: 27 Copynumber: 2.2 Consensus size: 26
9246119 ATTAATGAGT
* *
9246129 TTTAGGATTTGGATTCGAGGTTTAAGG
1 TTTAGGATTTGAATTCAAGGTTT-AGG
* *
9246156 TTTAGGGTTTGAATTTAAGGTTTAGG
1 TTTAGGATTTGAATTCAAGGTTTAGG
9246182 TTTA
1 TTTA
9246186 TGTTTAGGTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 7 0.27
27 19 0.73
ACGTcount: A:0.23, C:0.02, G:0.30, T:0.46
Consensus pattern (26 bp):
TTTAGGATTTGAATTCAAGGTTTAGG
Found at i:9249119 original size:30 final size:30
Alignment explanation
Indices: 9249085--9249144 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
9249075 ACTTAACAAG
9249085 CAAATACCTCTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
* *
9249115 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
9249145 TAATAAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.58, C:0.15, G:0.02, T:0.25
Consensus pattern (30 bp):
CAAATACCTCTAAAATAATAACAAAATTAA
Found at i:9252456 original size:39 final size:39
Alignment explanation
Indices: 9252382--9252457 Score: 91
Period size: 39 Copynumber: 1.9 Consensus size: 39
9252372 GAGGGTTAAA
***
9252382 ATTAAATTATAATTTTATTATTTTAAAATTTTTAAAAAG
1 ATTAAATTATAATTTTATTATTTTAAAAGAATTAAAAAG
**
9252421 ATTAAATTGA-AATTTTATTATTTTAATGGAATTAAAA
1 ATTAAATT-ATAATTTTATTATTTTAAAAGAATTAAAA
9252458 TTTATTTTAT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
39 30 0.97
40 1 0.03
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (39 bp):
ATTAAATTATAATTTTATTATTTTAAAAGAATTAAAAAG
Found at i:9253754 original size:14 final size:15
Alignment explanation
Indices: 9253735--9253768 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
9253725 CAGAATCTAA
9253735 AAAAAATTT-AGCTC
1 AAAAAATTTGAGCTC
*
9253749 AAAAAATTTGAGTTC
1 AAAAAATTTGAGCTC
9253764 AAAAA
1 AAAAA
9253769 GGCCGAGCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.56, C:0.09, G:0.09, T:0.26
Consensus pattern (15 bp):
AAAAAATTTGAGCTC
Found at i:9261065 original size:25 final size:27
Alignment explanation
Indices: 9261028--9261080 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
9261018 TCAAACATGC
9261028 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
9261054 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
9261080 A
1 A
9261081 AAATTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:9262597 original size:26 final size:26
Alignment explanation
Indices: 9262567--9262622 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
9262557 TGAAATGCCC
9262567 ATCATGGAACATTTACCTAACCCAAT
1 ATCATGGAACATTTACCTAACCCAAT
*
9262593 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCAAT
9262619 ATCA
1 ATCA
9262623 ATTTTTATCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.38, C:0.27, G:0.07, T:0.29
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCAAT
Found at i:9263940 original size:18 final size:18
Alignment explanation
Indices: 9263917--9263951 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
9263907 CCCAACTACT
*
9263917 GTATACGTGAATAGTGCC
1 GTATACATGAATAGTGCC
9263935 GTATACATGAATAGTGC
1 GTATACATGAATAGTGC
9263952 TATAAATGGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (18 bp):
GTATACATGAATAGTGCC
Found at i:9268193 original size:27 final size:27
Alignment explanation
Indices: 9268123--9268177 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
9268113 ACGAATGGGT
9268123 AAAGTCTCCATCTTCTTGACTAAGCTC
1 AAAGTCTCCATCTTCTTGACTAAGCTC
9268150 AAAGTCTCCATCTTCTTGACTAAGCTC
1 AAAGTCTCCATCTTCTTGACTAAGCTC
9268177 A
1 A
9268178 TAATAGCCCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (27 bp):
AAAGTCTCCATCTTCTTGACTAAGCTC
Found at i:9271535 original size:23 final size:23
Alignment explanation
Indices: 9271508--9271553 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
9271498 GGCACACACC
9271508 CATGTGGCTAGGATGTGTGGTAA
1 CATGTGGCTAGGATGTGTGGTAA
9271531 CATGTGGCTAGGATGTGTGGTAA
1 CATGTGGCTAGGATGTGTGGTAA
9271554 ACTAAATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.22, C:0.09, G:0.39, T:0.30
Consensus pattern (23 bp):
CATGTGGCTAGGATGTGTGGTAA
Found at i:9272823 original size:19 final size:17
Alignment explanation
Indices: 9272779--9272825 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
9272769 AACACAATAC
*
9272779 CATAATATCAATACTTA
1 CATAATATCAATACATA
9272796 CAT--TATCAATAGCCATA
1 CATAATATCAATA--CATA
9272813 CATAATATCAATA
1 CATAATATCAATA
9272826 ATATGTATCA
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
15 8 0.32
17 9 0.36
19 8 0.32
ACGTcount: A:0.47, C:0.19, G:0.02, T:0.32
Consensus pattern (17 bp):
CATAATATCAATACATA
Found at i:9273553 original size:9 final size:9
Alignment explanation
Indices: 9273512--9273566 Score: 55
Period size: 8 Copynumber: 6.6 Consensus size: 9
9273502 ATTTTATGCT
9273512 TTAT-TATA
1 TTATATATA
*
9273520 TTAT-TAAA
1 TTATATATA
9273528 TTAT-TATA
1 TTATATATA
*
9273536 ATA-ATATA
1 TTATATATA
9273544 TTATATATA
1 TTATATATA
*
9273553 TTATATATC
1 TTATATATA
9273562 TTATA
1 TTATA
9273567 CTTAAAATAT
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
8 22 0.55
9 18 0.45
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.55
Consensus pattern (9 bp):
TTATATATA
Found at i:9278563 original size:15 final size:15
Alignment explanation
Indices: 9278543--9278572 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
9278533 CATTTTATTT
*
9278543 ATATTAGGATAATTA
1 ATATTAAGATAATTA
9278558 ATATTAAGATAATTA
1 ATATTAAGATAATTA
9278573 TTAGGATGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:9278598 original size:13 final size:13
Alignment explanation
Indices: 9278580--9278604 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9278570 TTATTAGGAT
9278580 GATTTAATTTTAG
1 GATTTAATTTTAG
9278593 GATTTAATTTTA
1 GATTTAATTTTA
9278605 ATTATCTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
GATTTAATTTTAG
Found at i:9283907 original size:26 final size:23
Alignment explanation
Indices: 9283861--9283911 Score: 75
Period size: 26 Copynumber: 2.1 Consensus size: 23
9283851 TCAATCTTTA
9283861 TATTTTTTTATTAATTTGATCAT
1 TATTTTTTTATTAATTTGATCAT
9283884 TATTTTATTTAATTAAATTTGATCAT
1 TATTTT-TTT-ATT-AATTTGATCAT
9283910 TA
1 TA
9283912 ATCTTTTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
23 6 0.24
24 3 0.12
25 3 0.12
26 13 0.52
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.61
Consensus pattern (23 bp):
TATTTTTTTATTAATTTGATCAT
Found at i:9283919 original size:25 final size:24
Alignment explanation
Indices: 9283865--9283920 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 24
9283855 TCTTTATATT
* * *
9283865 TTTTTATTAATTTGATCATTATTT
1 TTTTAATTAATTTGATCATTAATC
9283889 TATTTAATTAAATTTGATCATTAATC
1 T-TTTAATT-AATTTGATCATTAATC
9283915 TTTTAA
1 TTTTAA
9283921 AAAAGTCAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
24 1 0.04
25 11 0.41
26 15 0.56
ACGTcount: A:0.32, C:0.05, G:0.04, T:0.59
Consensus pattern (24 bp):
TTTTAATTAATTTGATCATTAATC
Found at i:9291957 original size:29 final size:29
Alignment explanation
Indices: 9291925--9291987 Score: 108
Period size: 29 Copynumber: 2.2 Consensus size: 29
9291915 GATATTGATT
9291925 TTAGGACTAAATTGTGAAAAGACTAAATA
1 TTAGGACTAAATTGTGAAAAGACTAAATA
**
9291954 TTAGGGTTAAATTGTGAAAAGACTAAATA
1 TTAGGACTAAATTGTGAAAAGACTAAATA
9291983 TTAGG
1 TTAGG
9291988 GCTTGGTATT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.44, C:0.05, G:0.21, T:0.30
Consensus pattern (29 bp):
TTAGGACTAAATTGTGAAAAGACTAAATA
Found at i:9291988 original size:29 final size:29
Alignment explanation
Indices: 9291932--9291988 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
9291922 ATTTTAGGAC
9291932 TAAATTGTGAAAAGACTAAATATTAGGGT
1 TAAATTGTGAAAAGACTAAATATTAGGGT
9291961 TAAATTGTGAAAAGACTAAATATTAGGG
1 TAAATTGTGAAAAGACTAAATATTAGGG
9291989 CTTGGTATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.46, C:0.04, G:0.21, T:0.30
Consensus pattern (29 bp):
TAAATTGTGAAAAGACTAAATATTAGGGT
Found at i:9294255 original size:209 final size:210
Alignment explanation
Indices: 9293824--9294607 Score: 882
Period size: 208 Copynumber: 3.7 Consensus size: 210
9293814 AAATGATCAT
* * * * * *
9293824 ACCTAATTTTATTTGAGTTAGTTGACTTCAGATCGCAACTCCTAAATATCTCAATGACCTACGTT
1 ACCTAAGTTTATTTGAGTTAATTGATTTAAGATCGCAACTCCTAAATAGCTCACTGACCTACGTT
* * * * *
9293889 CACATCTGATATTAT-AAGGTTTAGCTGATTTAAA-ATCACAACCTAAGTTAATTTAAGTTAG-T
66 CACAGCTAATATTATAAAGG-TTAGCTGA-TTAAAGATCGCAACCTAAGTTTATTTGAGTTAGCT
* ** * * *
9293951 TGATTTTAGGATAACAACTCCTAAATAGCTCGTTAACCTATGTTCACAACTGATATTATAGAA-G
129 T-A-TTTAAGATCGCAACTCTTAAATAGCTCGTTGACCTATGTTCACAGCTGATATTAT-GAAGG
* *
9294015 TTAGCTGATTTAAGATCGTA
191 TTAGCTGATTTAAGATTGCA
* * * * *
9294035 ACCTAAGTTTATTTGAGTTAGTTGATTTAAGATCGCAACTCCTAAATAACTCGCCGACCTATGTT
1 ACCTAAGTTTATTTGAGTTAATTGATTTAAGATCGCAACTCCTAAATAGCTCACTGACCTACGTT
** * * * * *
9294100 TGCAGCTAATTTTTTAAAGGTTAACTGATTAAAGATTGCAACCTAAGTTTATTTTTA-TTAG-TT
66 CACAGCTAATATTATAAAGGTTAGCTGATTAAAGATCGCAACCTAAGTTTA-TTTGAGTTAGCTT
* * * * * *
9294163 ATTTAAGATCGCAACTCTTATACAGCTCGTCGACCTATGTTCATAGTTGATATTATGAAGGTTAA
130 ATTTAAGATCGCAACTCTTAAATAGCTCGTTGACCTATGTTCACAGCTGATATTATGAAGGTTAG
* *
9294228 TTGATTTAATATTGCA
195 CTGATTTAAGATTGCA
* * * * * **
9294244 ACCTAAGTTTATTTGAGTTAATTGATTTAATATCTCAACTTCTAAAGAGCTCGCTGACCTATTTT
1 ACCTAAGTTTATTTGAGTTAATTGATTTAAGATCGCAACTCCTAAATAGCTCACTGACCTACGTT
* * * * * *
9294309 CACATCTAATATTATAAAGGTTAGCTAATTTAATATTGCAACCTAAGTTTATTTGAGTTAGTTTA
66 CACAGCTAATATTATAAAGGTTAGCTGATTAAAGATCGCAACCTAAGTTTATTTGAGTTAGCTTA
**
9294374 TTTAAGATCGCAACTCTTAAATAGCTCGTTGACCTACATTCACAGCTGATATTA--AAGGTTAGC
131 TTTAAGATCGCAACTCTTAAATAGCTCGTTGACCTATGTTCACAGCTGATATTATGAAGGTTAGC
*
9294437 TAATTTAAGATTGCA
196 TGATTTAAGATTGCA
* *
9294452 ACCTAAGTTTATTTGAGTTAATTGATTTAATATCGCAACTCCTAAACAGCTCACTGACCTACGTT
1 ACCTAAGTTTATTTGAGTTAATTGATTTAAGATCGCAACTCCTAAATAGCTCACTGACCTACGTT
* * * * *
9294517 CACAGCTAATATTGTAAAGGTTAGTTGATTTAAGATCGCAACTTAAGTTTATTTGAGTTAGCTGA
66 CACAGCTAATATTATAAAGGTTAGCTGATTAAAGATCGCAACCTAAGTTTATTTGAGTTAGCTTA
* *
9294582 TTTAAGATCGCAACTCCTGAATAGCT
131 TTTAAGATCGCAACTCTTAAATAGCT
9294608 TACTGATATA
Statistics
Matches: 486, Mismatches: 81, Indels: 15
0.84 0.14 0.03
Matches are distributed among these distances:
208 166 0.34
209 163 0.34
210 56 0.12
211 93 0.19
212 8 0.02
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37
Consensus pattern (210 bp):
ACCTAAGTTTATTTGAGTTAATTGATTTAAGATCGCAACTCCTAAATAGCTCACTGACCTACGTT
CACAGCTAATATTATAAAGGTTAGCTGATTAAAGATCGCAACCTAAGTTTATTTGAGTTAGCTTA
TTTAAGATCGCAACTCTTAAATAGCTCGTTGACCTATGTTCACAGCTGATATTATGAAGGTTAGC
TGATTTAAGATTGCA
Found at i:9294482 original size:208 final size:209
Alignment explanation
Indices: 9293824--9294607 Score: 910
Period size: 209 Copynumber: 3.7 Consensus size: 209
9293814 AAATGATCAT
* * * * * *
9293824 ACCTAATTTTATTTGAGTTAGTTGACTTCAGATCGCAACTCCTAAATATCTCAATGACCTACGTT
1 ACCTAAGTTTATTTGAGTTAATTGATTTAAGATCGCAACTCCTAAATAGCTCACTGACCTACGTT
* * * * * *
9293889 CACATCTGATATTAT-AAGGTTTAGCTGATTTAAAATCACAACCTAAGTTAATTTAAGTTAGTTG
66 CACAGCTAATATTATAAAGG-TTAGCTGATTTAAGATCGCAACCTAAGTTTATTTGAGTTAGTTG
* ** * * *
9293953 ATTTTAGGATAACAACTCCTAAATAGCTCGTTAACCTATGTTCACAACTGATATTATAGAAGTTA
130 A-TTTAAGATCGCAACTCCTAAATAGCTCGTTGACCTATGTTCACAGCTGATATTATA-AGGTTA
* *
9294018 GCTGATTTAAGATCGTA
193 GCTGATTTAAGATTGCA
* * * * *
9294035 ACCTAAGTTTATTTGAGTTAGTTGATTTAAGATCGCAACTCCTAAATAACTCGCCGACCTATGTT
1 ACCTAAGTTTATTTGAGTTAATTGATTTAAGATCGCAACTCCTAAATAGCTCACTGACCTACGTT
** * * * * * *
9294100 TGCAGCTAATTTTTTAAAGGTTAACTGATTAAAGATTGCAACCTAAGTTTATTTTTA-TTAGTT-
66 CACAGCTAATATTATAAAGGTTAGCTGATTTAAGATCGCAACCTAAGTTTA-TTTGAGTTAGTTG
* * * * * * *
9294163 ATTTAAGATCGCAACTCTTATACAGCTCGTCGACCTATGTTCATAGTTGATATTATGAAGGTTAA
130 ATTTAAGATCGCAACTCCTAAATAGCTCGTTGACCTATGTTCACAGCTGATATTAT-AAGGTTAG
* *
9294228 TTGATTTAATATTGCA
194 CTGATTTAAGATTGCA
* * * * * **
9294244 ACCTAAGTTTATTTGAGTTAATTGATTTAATATCTCAACTTCTAAAGAGCTCGCTGACCTATTTT
1 ACCTAAGTTTATTTGAGTTAATTGATTTAAGATCGCAACTCCTAAATAGCTCACTGACCTACGTT
* * * * *
9294309 CACATCTAATATTATAAAGGTTAGCTAATTTAATATTGCAACCTAAGTTTATTTGAGTTAGTTTA
66 CACAGCTAATATTATAAAGGTTAGCTGATTTAAGATCGCAACCTAAGTTTATTTGAGTTAGTTGA
* **
9294374 TTTAAGATCGCAACTCTTAAATAGCTCGTTGACCTACATTCACAGCTGATATTA-AAGGTTAGCT
131 TTTAAGATCGCAACTCCTAAATAGCTCGTTGACCTATGTTCACAGCTGATATTATAAGGTTAGCT
*
9294438 AATTTAAGATTGCA
196 GATTTAAGATTGCA
* *
9294452 ACCTAAGTTTATTTGAGTTAATTGATTTAATATCGCAACTCCTAAACAGCTCACTGACCTACGTT
1 ACCTAAGTTTATTTGAGTTAATTGATTTAAGATCGCAACTCCTAAATAGCTCACTGACCTACGTT
* * * *
9294517 CACAGCTAATATTGTAAAGGTTAGTTGATTTAAGATCGCAACTTAAGTTTATTTGAGTTAGCTGA
66 CACAGCTAATATTATAAAGGTTAGCTGATTTAAGATCGCAACCTAAGTTTATTTGAGTTAGTTGA
*
9294582 TTTAAGATCGCAACTCCTGAATAGCT
131 TTTAAGATCGCAACTCCTAAATAGCT
9294608 TACTGATATA
Statistics
Matches: 484, Mismatches: 84, Indels: 13
0.83 0.14 0.02
Matches are distributed among these distances:
208 163 0.34
209 166 0.34
210 50 0.10
211 97 0.20
212 8 0.02
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37
Consensus pattern (209 bp):
ACCTAAGTTTATTTGAGTTAATTGATTTAAGATCGCAACTCCTAAATAGCTCACTGACCTACGTT
CACAGCTAATATTATAAAGGTTAGCTGATTTAAGATCGCAACCTAAGTTTATTTGAGTTAGTTGA
TTTAAGATCGCAACTCCTAAATAGCTCGTTGACCTATGTTCACAGCTGATATTATAAGGTTAGCT
GATTTAAGATTGCA
Found at i:9294613 original size:105 final size:105
Alignment explanation
Indices: 9293824--9294607 Score: 862
Period size: 105 Copynumber: 7.5 Consensus size: 105
9293814 AAATGATCAT
* * * * ** *
9293824 ACCTAATTTTATTTGAGTTAGTTGACTTCAGATCGCAACTCCTAAATATCTCAATGACCTACGTT
1 ACCTAAGTTTATTTGAGTTAGTTGATTTAAGATCGCAACTCCTAAATAGCTCGCTGACCTATGTT
* * **
9293889 CACATCTGATATTAT-AAGGTTTAGCTGATTTAAAATCACA
66 CACAGCTGATATTATAAAGG-TTAGCTGATTTAAGATTGCA
* * * ** * *
9293929 ACCTAAGTTAATTTAAGTTAGTTGATTTTAGGATAACAACTCCTAAATAGCTCGTTAACCTATGT
1 ACCTAAGTTTATTTGAGTTAGTTGA-TTTAAGATCGCAACTCCTAAATAGCTCGCTGACCTATGT
* * *
9293994 TCACAACTGATATTATAGAA-GTTAGCTGATTTAAGATCGTA
65 TCACAGCTGATATTATA-AAGGTTAGCTGATTTAAGATTGCA
* *
9294035 ACCTAAGTTTATTTGAGTTAGTTGATTTAAGATCGCAACTCCTAAATAACTCGCCGACCTATGTT
1 ACCTAAGTTTATTTGAGTTAGTTGATTTAAGATCGCAACTCCTAAATAGCTCGCTGACCTATGTT
** * * * * *
9294100 TGCAGCTAATTTTTTAAAGGTTAACTGATTAAAGATTGCA
66 CACAGCTGATATTATAAAGGTTAGCTGATTTAAGATTGCA
* * * *
9294140 ACCTAAGTTTATTTTTA-TTAGTT-ATTTAAGATCGCAACTCTTATACAGCTCG-TCGACCTATG
1 ACCTAAGTTTA-TTTGAGTTAGTTGATTTAAGATCGCAACTCCTAAATAGCTCGCT-GACCTATG
* * * ** *
9294202 TTCATAGTTGATATTATGAAGGTTAATTGATTTAATATTGCA
64 TTCACAGCTGATATTATAAAGGTTAGCTGATTTAAGATTGCA
* * * * * *
9294244 ACCTAAGTTTATTTGAGTTAATTGATTTAATATCTCAACTTCTAAAGAGCTCGCTGACCTATTTT
1 ACCTAAGTTTATTTGAGTTAGTTGATTTAAGATCGCAACTCCTAAATAGCTCGCTGACCTATGTT
* * * *
9294309 CACATCTAATATTATAAAGGTTAGCTAATTTAATATTGCA
66 CACAGCTGATATTATAAAGGTTAGCTGATTTAAGATTGCA
* * * **
9294349 ACCTAAGTTTATTTGAGTTAGTTTATTTAAGATCGCAACTCTTAAATAGCTCGTTGACCTACATT
1 ACCTAAGTTTATTTGAGTTAGTTGATTTAAGATCGCAACTCCTAAATAGCTCGCTGACCTATGTT
*
9294414 CACAGCTGATA-T-TAAAGGTTAGCTAATTTAAGATTGCA
66 CACAGCTGATATTATAAAGGTTAGCTGATTTAAGATTGCA
* * * * *
9294452 ACCTAAGTTTATTTGAGTTAATTGATTTAATATCGCAACTCCTAAACAGCTCACTGACCTACGTT
1 ACCTAAGTTTATTTGAGTTAGTTGATTTAAGATCGCAACTCCTAAATAGCTCGCTGACCTATGTT
* * * *
9294517 CACAGCTAATATTGTAAAGGTTAGTTGATTTAAGATCGCA
66 CACAGCTGATATTATAAAGGTTAGCTGATTTAAGATTGCA
* * *
9294557 ACTTAAGTTTATTTGAGTTAGCTGATTTAAGATCGCAACTCCTGAATAGCT
1 ACCTAAGTTTATTTGAGTTAGTTGATTTAAGATCGCAACTCCTAAATAGCT
9294608 TACTGATATA
Statistics
Matches: 567, Mismatches: 101, Indels: 22
0.82 0.15 0.03
Matches are distributed among these distances:
103 96 0.17
104 84 0.15
105 295 0.52
106 89 0.16
107 1 0.00
108 2 0.00
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37
Consensus pattern (105 bp):
ACCTAAGTTTATTTGAGTTAGTTGATTTAAGATCGCAACTCCTAAATAGCTCGCTGACCTATGTT
CACAGCTGATATTATAAAGGTTAGCTGATTTAAGATTGCA
Found at i:9299277 original size:10 final size:10
Alignment explanation
Indices: 9299262--9299286 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
9299252 CCATAATTTA
9299262 TGATACAAAT
1 TGATACAAAT
9299272 TGATACAAAT
1 TGATACAAAT
9299282 TGATA
1 TGATA
9299287 ATGGGTTAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.48, C:0.08, G:0.12, T:0.32
Consensus pattern (10 bp):
TGATACAAAT
Found at i:9299318 original size:26 final size:26
Alignment explanation
Indices: 9299282--9299389 Score: 216
Period size: 26 Copynumber: 4.2 Consensus size: 26
9299272 TGATACAAAT
9299282 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
9299308 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
9299334 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
9299360 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
9299386 TGAT
1 TGAT
9299390 TGGAATTTCA
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.31, C:0.07, G:0.27, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:9304299 original size:29 final size:28
Alignment explanation
Indices: 9304266--9304330 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 28
9304256 ACTAAAAGGG
* *
9304266 TATACATATATGTATAGTGATATTAGAAA
1 TATACATATATATATA-TAATATTAGAAA
*
9304295 TATACTATATATATATATAATATTTGAAA
1 TATAC-ATATATATATATAATATTAGAAA
9304324 TATACAT
1 TATACAT
9304331 GAAGTGATAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
28 2 0.06
29 20 0.62
30 10 0.31
ACGTcount: A:0.46, C:0.05, G:0.08, T:0.42
Consensus pattern (28 bp):
TATACATATATATATATAATATTAGAAA
Found at i:9304661 original size:21 final size:21
Alignment explanation
Indices: 9304631--9304670 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
9304621 ATTAATAATA
9304631 ATACTAATAT-TACATAAAGGT
1 ATACTAATATATAC-TAAAGGT
*
9304652 ATACTTATATATACTAAAG
1 ATACTAATATATACTAAAG
9304671 TTATGTACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.47, C:0.10, G:0.07, T:0.35
Consensus pattern (21 bp):
ATACTAATATATACTAAAGGT
Found at i:9304743 original size:3 final size:3
Alignment explanation
Indices: 9304729--9304826 Score: 62
Period size: 3 Copynumber: 32.7 Consensus size: 3
9304719 TACATAACAT
*
9304729 ATA ATA AAA ATA ATA AT- ATA CATA AT- ATA TATA A-A ATA CATA TATA
1 ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA -ATA ATA ATA -ATA -ATA
* * * **
9304775 ACA A-A ACA TATA CT- ATA ATA ATA ATA ATA ATA ATA AGG ATA ATA
1 ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
9304819 ATA ATA AT
1 ATA ATA AT
9304827 GTAAAAAAAA
Statistics
Matches: 75, Mismatches: 11, Indels: 18
0.72 0.11 0.17
Matches are distributed among these distances:
2 9 0.12
3 52 0.69
4 14 0.19
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:9304749 original size:28 final size:28
Alignment explanation
Indices: 9304716--9304803 Score: 92
Period size: 28 Copynumber: 3.1 Consensus size: 28
9304706 AATATTTAAC
9304716 ATATACATAACATATAATAAAAATAATA
1 ATATACATAACATATAATAAAAATAATA
*
9304744 ATATACATAATATAT-AT-AAAATACAT-
1 ATATACATAACATATAATAAAAATA-ATA
* *
9304770 ATATAACAAAACATATACTATAATAATAATA
1 ATAT-ACATAACATATA--ATAAAAATAATA
9304801 ATA
1 ATA
9304804 ATAATAAGGA
Statistics
Matches: 49, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
26 10 0.20
27 13 0.27
28 14 0.29
30 4 0.08
31 8 0.16
ACGTcount: A:0.61, C:0.08, G:0.00, T:0.31
Consensus pattern (28 bp):
ATATACATAACATATAATAAAAATAATA
Found at i:9308215 original size:17 final size:18
Alignment explanation
Indices: 9308183--9308217 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
9308173 AAATTTTTGT
9308183 TTTTTGCCCTCAAATTTA
1 TTTTTGCCCTCAAATTTA
*
9308201 TTTTTGCCTTC-AATTTA
1 TTTTTGCCCTCAAATTTA
9308218 GTCCCTACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.20, C:0.20, G:0.06, T:0.54
Consensus pattern (18 bp):
TTTTTGCCCTCAAATTTA
Found at i:9309986 original size:22 final size:21
Alignment explanation
Indices: 9309961--9310001 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
9309951 TTAAAAAATA
*
9309961 AAAAAATAATATGAGCATATCT
1 AAAAAAGAAT-TGAGCATATCT
*
9309983 AAAATAGAATTGAGCATAT
1 AAAAAAGAATTGAGCATAT
9310002 TTCAGGTCGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.54, C:0.07, G:0.12, T:0.27
Consensus pattern (21 bp):
AAAAAAGAATTGAGCATATCT
Found at i:9310975 original size:6 final size:6
Alignment explanation
Indices: 9310964--9310988 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
9310954 ACCAACCTAA
9310964 TTAATT TTAATT TTAATT TTAATT T
1 TTAATT TTAATT TTAATT TTAATT T
9310989 GAACTTTGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (6 bp):
TTAATT
Found at i:9313721 original size:22 final size:20
Alignment explanation
Indices: 9313680--9313726 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 20
9313670 GAATCCACTA
9313680 TTTACATAATTATGTTTAAAGT
1 TTTACATAATTATG-TTAAA-T
9313702 TTTACATATATTTATG-TAAAT
1 TTTACATA-A-TTATGTTAAAT
9313723 TTTA
1 TTTA
9313727 ACACTTTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
21 5 0.22
22 12 0.52
23 1 0.04
24 5 0.22
ACGTcount: A:0.36, C:0.04, G:0.06, T:0.53
Consensus pattern (20 bp):
TTTACATAATTATGTTAAAT
Found at i:9315919 original size:133 final size:131
Alignment explanation
Indices: 9315594--9316075 Score: 439
Period size: 133 Copynumber: 3.6 Consensus size: 131
9315584 TATTCAATTA
* * * * * * *
9315594 TTTTGAACAAACGGGAGATTGTAACCCGGCACGATAGGGCACTATTCCCCGAATTG-CTAAACAT
1 TTTTGAACAAACGAGAAATCGCAACCCAGCACAATAGGGCACGATT-CCCGAATTGTC-AAACAT
* * ** * * * * *
9315658 CAAACATTTCTTTCATTTTAAAGAGTTTTTAGAAAACGTGAGTGAAATTCTGAAGGGATCTTCGA
64 CGAATATCGCCTTCGTTTTAAAGGGTTTTTAGAAAACATGAGTGAAATTCTGAAGGGATCTTTGA
9315723 TCG
129 TCG
* * * * * * *
9315726 TTTTGAACAAATGAAAAAACGCAACCCAGCACAGTAGGGTACGATTCTCGAATTGCCAAACATCG
1 TTTTGAACAAACGAGAAATCGCAACCCAGCACAATAGGGCACGATTCCCGAATTGTCAAACATCG
* * * ** * *
9315791 AACATCGCCTTTGTTTTAAAGGGTTTTCTTAAAAAACATGAGTGAAAACCTGAAGGAATATTTGA
66 AATATCGCCTTCGTTTTAAAGGG-TTT-TTAGAAAACATGAGTGAAATTCTGAAGGGATCTTTGA
9315856 TCG
129 TCG
* * * *
9315859 TTTTGAACAAACGAGAAATCACAACCCAGCACAATAGGGCATGATTCCCGAATTATCAAACACCG
1 TTTTGAACAAACGAGAAATCGCAACCCAGCACAATAGGGCACGATTCCCGAATTGTCAAACATCG
* * * * * *
9315924 AGTATTGCCTTCGTTTT-AAGGGATTTTTAGAAGACACGAGTGAAATTTTGAAGGGACCTTTGAT
66 AATATCGCCTTCGTTTTAAAGGG-TTTTTAGAAAACATGAGTGAAATTCTGAAGGGATCTTTGAT
**
9315988 TA
130 CG
* * * * ** *
9315990 CTTTGAGC-AACTGAGAAATTGCAACCCAACACGTTAGGGCACGATTCCACGAATTGTCAAATAT
1 TTTTGAACAAAC-GAGAAATCGCAACCCAGCACAATAGGGCACGATTCC-CGAATTGTCAAACAT
9316054 CGAATATCGCCTTCGTTTTAAA
64 CGAATATCGCCTTCGTTTTAAA
9316076 TATTTATGAA
Statistics
Matches: 277, Mismatches: 67, Indels: 11
0.78 0.19 0.03
Matches are distributed among these distances:
130 3 0.01
131 97 0.35
132 75 0.27
133 102 0.37
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (131 bp):
TTTTGAACAAACGAGAAATCGCAACCCAGCACAATAGGGCACGATTCCCGAATTGTCAAACATCG
AATATCGCCTTCGTTTTAAAGGGTTTTTAGAAAACATGAGTGAAATTCTGAAGGGATCTTTGATC
G
Found at i:9319059 original size:24 final size:24
Alignment explanation
Indices: 9319032--9319078 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
9319022 CTGGTTATAG
*
9319032 GCTTATGGTCGCTTCTGGCTGTTA
1 GCTTATGGTCACTTCTGGCTGTTA
*
9319056 GCTTATGGTCATTTCTGGCTGTT
1 GCTTATGGTCACTTCTGGCTGTT
9319079 CGACTAACCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.09, C:0.19, G:0.28, T:0.45
Consensus pattern (24 bp):
GCTTATGGTCACTTCTGGCTGTTA
Found at i:9321008 original size:25 final size:25
Alignment explanation
Indices: 9320931--9321085 Score: 72
Period size: 25 Copynumber: 6.3 Consensus size: 25
9320921 CAGCTCTTAC
* * *
9320931 GAGCATCCCTATATTTGGCT-CTAAT
1 GAGCTTCCCGATATATGGCTCCT-AT
* * * *
9320956 GAGCTTCCCGTTATATGGTTCTTGT
1 GAGCTTCCCGATATATGGCTCCTAT
9320981 GAGCTTCCCGATA-ACTGGCTCCTAT
1 GAGCTTCCCGATATA-TGGCTCCTAT
* * * *
9321006 GAGCTTTCTG-TTTAATGACTCTCTA-
1 GAGCTTCCCGATAT-ATGGCTC-CTAT
* *
9321031 GAGTTTCCTGATAT-TGGCTCACT-T
1 GAGCTTCCCGATATATGGCTC-CTAT
* * *
9321055 GAACTTCCCGAT-TACGGCTCTTAT
1 GAGCTTCCCGATATATGGCTCCTAT
9321079 GAGCTTC
1 GAGCTTC
9321086 TTGTTATATA
Statistics
Matches: 95, Mismatches: 26, Indels: 19
0.68 0.19 0.14
Matches are distributed among these distances:
23 2 0.02
24 30 0.32
25 56 0.59
26 7 0.07
ACGTcount: A:0.19, C:0.25, G:0.19, T:0.37
Consensus pattern (25 bp):
GAGCTTCCCGATATATGGCTCCTAT
Found at i:9338006 original size:6 final size:6
Alignment explanation
Indices: 9337997--9338055 Score: 55
Period size: 6 Copynumber: 9.5 Consensus size: 6
9337987 AGATATAGAC
* * * *
9337997 TCAGTT TCAGAT TCAGAT TTAGAT ATCATAT TCAGAT TCAGAT AGCAGAT
1 TCAGAT TCAGAT TCAGAT TCAGAT -TCAGAT TCAGAT TCAGAT -TCAGAT
*
9338047 TCATAT TCA
1 TCAGAT TCA
9338056 AATAACAGAT
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
6 34 0.79
7 9 0.21
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37
Consensus pattern (6 bp):
TCAGAT
Found at i:9338048 original size:19 final size:19
Alignment explanation
Indices: 9338004--9338065 Score: 70
Period size: 19 Copynumber: 3.3 Consensus size: 19
9337994 GACTCAGTTT
* *
9338004 CAGATTCAGATTTAGATAT
1 CAGATTCAGATTCAGATAA
* *
9338023 CATATTCAGATTCAGATAG
1 CAGATTCAGATTCAGATAA
* *
9338042 CAGATTCATATTCAAATAA
1 CAGATTCAGATTCAGATAA
9338061 CAGAT
1 CAGAT
9338066 ATGCCAAGGT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 36 1.00
ACGTcount: A:0.40, C:0.15, G:0.13, T:0.32
Consensus pattern (19 bp):
CAGATTCAGATTCAGATAA
Found at i:9338050 original size:25 final size:25
Alignment explanation
Indices: 9338002--9338055 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
9337992 TAGACTCAGT
**
9338002 TTCAGATTCAGATTTAGATATCATA
1 TTCAGATTCAGATGCAGATATCATA
9338027 TTCAGATTCAGATAGCAGAT-TCATA
1 TTCAGATTCAGAT-GCAGATATCATA
9338052 TTCA
1 TTCA
9338056 AATAACAGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 22 0.85
26 4 0.15
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.37
Consensus pattern (25 bp):
TTCAGATTCAGATGCAGATATCATA
Found at i:9340897 original size:21 final size:21
Alignment explanation
Indices: 9340849--9340889 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
9340839 TCATAAAGCT
9340849 TATTTATATTTTAATTAATCA
1 TATTTATATTTTAATTAATCA
9340870 TATTT-TAATTTTAATTAATC
1 TATTTAT-ATTTTAATTAATC
9340890 CTCATTTACT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 1 0.05
21 18 0.95
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.59
Consensus pattern (21 bp):
TATTTATATTTTAATTAATCA
Found at i:9343470 original size:26 final size:26
Alignment explanation
Indices: 9343412--9343463 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
9343402 TTTTAACTAA
* *
9343412 AATTAAGTTGAATTAGAGAATATATT
1 AATTAAATTGAATTAGAAAATATATT
9343438 AATTAAATTGAATTAGAAAATATATT
1 AATTAAATTGAATTAGAAAATATATT
9343464 TTTTAAAAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.12, T:0.38
Consensus pattern (26 bp):
AATTAAATTGAATTAGAAAATATATT
Found at i:9344714 original size:136 final size:135
Alignment explanation
Indices: 9344471--9344742 Score: 483
Period size: 136 Copynumber: 2.0 Consensus size: 135
9344461 GCTTCGAGAA
*
9344471 ATGTCAAGTTGGTTAATTGCATTGGATTCTTCCTTGAAGCTTGTTTGATGAGAGGTCCAATGATT
1 ATGTCAAGTTGGTTAATTGCATTGAATTCTTCCTTGAAGCTTGTTTGATGAGAGGTCCAATGATT
9344536 CAAGTGCCGCCAATTTTTCAAGTGAAGGTGGGATATGCCACAACTAGAATAGGTCATAAATTCGT
66 CAAGTGCCGCCAATTTTTCAAGTGAAGGTGGGATATGCCACAACTAGAATAGGTCATAAATTCGT
9344601 TTATG
131 TTATG
*
9344606 ATGTCAAGTTGGTTAATTGCATTAGAATTCTTCCTTGAAGCTTGTTTGATGA-AGGATTCAATGA
1 ATGTCAAGTTGGTTAATTGCATT-GAATTCTTCCTTGAAGCTTGTTTGATGAGAGG-TCCAATGA
* *
9344670 TTCAAGTGCCGCCAATTTTTCAAGTGAAGGTGGGATGTGCCACAACTAGAATAGGTCCTAAATTC
64 TTCAAGTGCCGCCAATTTTTCAAGTGAAGGTGGGATATGCCACAACTAGAATAGGTCATAAATTC
9344735 GTTTATG
129 GTTTATG
9344742 A
1 A
9344743 ATCTATTTAC
Statistics
Matches: 131, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
135 26 0.20
136 105 0.80
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (135 bp):
ATGTCAAGTTGGTTAATTGCATTGAATTCTTCCTTGAAGCTTGTTTGATGAGAGGTCCAATGATT
CAAGTGCCGCCAATTTTTCAAGTGAAGGTGGGATATGCCACAACTAGAATAGGTCATAAATTCGT
TTATG
Found at i:9347597 original size:18 final size:19
Alignment explanation
Indices: 9347576--9347611 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
9347566 TCAGTTTTAT
*
9347576 TAAACAC-AATGTTTTTCC
1 TAAACACGAATGATTTTCC
9347594 TAAACACGAATGATTTTC
1 TAAACACGAATGATTTTC
9347612 TTTAAATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.36, C:0.19, G:0.08, T:0.36
Consensus pattern (19 bp):
TAAACACGAATGATTTTCC
Found at i:9356202 original size:16 final size:17
Alignment explanation
Indices: 9356181--9356214 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
9356171 CAGTCTCTAG
*
9356181 TAGTTT-ACTATAGTTT
1 TAGTTTAACTACAGTTT
9356197 TAGTTTAACTACAGTTT
1 TAGTTTAACTACAGTTT
9356214 T
1 T
9356215 CATTATATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.26, C:0.09, G:0.12, T:0.53
Consensus pattern (17 bp):
TAGTTTAACTACAGTTT
Found at i:9357625 original size:17 final size:17
Alignment explanation
Indices: 9357603--9357662 Score: 56
Period size: 17 Copynumber: 3.8 Consensus size: 17
9357593 GTAGCTTGCT
9357603 CGTGTGGCCCACACACC
1 CGTGTGGCCCACACACC
* *
9357620 CGTGTGG---AC-TACT
1 CGTGTGGCCCACACACC
*
9357633 CGTGTGGCCCACACGCC
1 CGTGTGGCCCACACACC
*
9357650 TGTGTGGCCCACA
1 CGTGTGGCCCACA
9357663 TGACTTAAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
13 9 0.27
14 2 0.06
16 2 0.06
17 20 0.61
ACGTcount: A:0.15, C:0.38, G:0.28, T:0.18
Consensus pattern (17 bp):
CGTGTGGCCCACACACC
Found at i:9361374 original size:47 final size:47
Alignment explanation
Indices: 9361311--9361813 Score: 812
Period size: 47 Copynumber: 10.6 Consensus size: 47
9361301 CCCTTCGGGA
* * *
9361311 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
9361358 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
9361405 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
9361452 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
9361499 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
9361546 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
9361595 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
9361642 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
9361689 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
9361738 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
9361787 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
9361814 TATTCAAATA
Statistics
Matches: 435, Mismatches: 15, Indels: 12
0.94 0.03 0.03
Matches are distributed among these distances:
46 1 0.00
47 296 0.68
49 137 0.31
50 1 0.00
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:9361621 original size:143 final size:143
Alignment explanation
Indices: 9361311--9361813 Score: 834
Period size: 143 Copynumber: 3.5 Consensus size: 143
9361301 CCCTTCGGGA
* * *
9361311 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
9361376 TTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACA
9361439 TTGGCCATTCGGC
131 TTGGCCATTCGGC
* * * *
9361452 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACA
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA
9361516 -TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCA
65 CT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCA
9361580 CATTGGCCATTCGGC
129 CATTGGCCATTCGGC
* *
9361595 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
* *
9361660 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACA
*
9361725 TTGGCCATTAGGC
131 TTGGCCATTCGGC
9361738 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
9361803 ACTTTCACATT
64 ACTTTCACATT
9361814 TATTCAAATA
Statistics
Matches: 336, Mismatches: 18, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
140 2 0.01
141 91 0.27
143 177 0.53
144 2 0.01
145 64 0.19
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (143 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACA
TTGGCCATTCGGC
Found at i:9363336 original size:56 final size:56
Alignment explanation
Indices: 9363269--9363388 Score: 222
Period size: 56 Copynumber: 2.1 Consensus size: 56
9363259 TATTAGTTTA
*
9363269 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAGCATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
9363325 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
9363381 TTGCCCAT
1 TTGCCCAT
9363389 CATCCCTTGC
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 62 1.00
ACGTcount: A:0.22, C:0.23, G:0.10, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:9374103 original size:862 final size:862
Alignment explanation
Indices: 9372440--9374166 Score: 3409
Period size: 862 Copynumber: 2.0 Consensus size: 862
9372430 AGATTTAAAT
9372440 ATGTGATGTATGTATTAAGCATGTTAATTTATGCATGTTTACTGATCTGCATGTATGACTGATAA
1 ATGTGATGTATGTATTAAGCATGTTAATTTATGCATGTTTACTGATCTGCATGTATGACTGATAA
9372505 CTGAATTTTAGCATGTAAGCATGTATTCCTATATATCTGTATTGAGCATGTCTAGTTGCATCTGC
66 CTGAATTTTAGCATGTAAGCATGTATTCCTATATATCTGTATTGAGCATGTCTAGTTGCATCTGC
9372570 ATTGGGGTGGCATAATTGATTATTGGAGGAAGCGTACTGGAAGACTTTCATGCCTATTATCTAGC
131 ATTGGGGTGGCATAATTGATTATTGGAGGAAGCGTACTGGAAGACTTTCATGCCTATTATCTAGC
9372635 AGCTCAGCTACAATATTACTGATATATGCCGCATTTGGTACGACCTAGTGTGTAGGGCTGGGTGG
196 AGCTCAGCTACAATATTACTGATATATGCCGCATTTGGTACGACCTAGTGTGTAGGGCTGGGTGG
9372700 GTGTTTTAAACCCCACATGGTGTGTGGGGATGATCGGAGATGGTGTGTAGAGGCTGGTGGGTAGG
261 GTGTTTTAAACCCCACATGGTGTGTGGGGATGATCGGAGATGGTGTGTAGAGGCTGGTGGGTAGG
9372765 ATACTGGTTTTTGTTACTATATGCATACTGTATTTGAGAAGGACTAAGGTCCTAATTTATATATG
326 ATACTGGTTTTTGTTACTATATGCATACTGTATTTGAGAAGGACTAAGGTCCTAATTTATATATG
9372830 AAACTGTATCTGAATAAGCTAAGGCCTAAACTGTATCTATATTTGTAATGGACTTAGGCCCAGCC
391 AAACTGTATCTGAATAAGCTAAGGCCTAAACTGTATCTATATTTGTAATGGACTTAGGCCCAGCC
*
9372895 TGCATTTAACTGATGACTGTTGTTTGACTGTATGCATGTCTTCTGTGGGGATTACACACTGAGTT
456 TGCATTTAACTGATGACTATTGTTTGACTGTATGCATGTCTTCTGTGGGGATTACACACTGAGTT
9372960 TACATAAACTCACCCCTTTCTATTTTAACTGTATAGGTAATCCCCAAACTTAGAAGGACCTGTGC
521 TACATAAACTCACCCCTTTCTATTTTAACTGTATAGGTAATCCCCAAACTTAGAAGGACCTGTGC
9373025 AACGGAGGACTTAACGGTATCTACATGTTTATCGCCATACTTAAACTTCATTTATGGTTTTTAAT
586 AACGGAGGACTTAACGGTATCTACATGTTTATCGCCATACTTAAACTTCATTTATGGTTTTTAAT
9373090 CTTTATTCTTATGGGTTATTTTTTATGTAATTTGGGACTTTTGGACGGTTTGCATTTATTTTGGA
651 CTTTATTCTTATGGGTTATTTTTTATGTAATTTGGGACTTTTGGACGGTTTGCATTTATTTTGGA
9373155 TTTTAACTGTTTTCATGAACTTTTGAATTGCAATGAAAACTCAGTTTTATTAAATACAACGTTTT
716 TTTTAACTGTTTTCATGAACTTTTGAATTGCAATGAAAACTCAGTTTTATTAAATACAACGTTTT
9373220 TCCTAAACGCGAATGATTTTCTTTAAATATCACAGTTTTAAAAGCTTCAGCTACAGAATATGTTT
781 TCCTAAACGCGAATGATTTTCTTTAAATATCACAGTTTTAAAAGCTTCAGCTACAGAATATGTTT
9373285 TAAAACGATTCAAATTA
846 TAAAACGATTCAAATTA
9373302 ATGTGATGTATGTATTAAGCATGTTAATTTATGCATGTTTACTGATCTGCATGTATGACTGATAA
1 ATGTGATGTATGTATTAAGCATGTTAATTTATGCATGTTTACTGATCTGCATGTATGACTGATAA
9373367 CTGAATTTTAGCATGTAAGCATGTATTCCTATATATCTGTATTGAGCATGTCTAGTTGCATCTGC
66 CTGAATTTTAGCATGTAAGCATGTATTCCTATATATCTGTATTGAGCATGTCTAGTTGCATCTGC
9373432 ATTGGGGTGGCATAATTGATTATTGGAGGAAGCGTACTGGAAGACTTTCATGCCTATTATCTAGC
131 ATTGGGGTGGCATAATTGATTATTGGAGGAAGCGTACTGGAAGACTTTCATGCCTATTATCTAGC
9373497 AGCTCAGCTACAATATTACTGATATATGCCGCATTTGGTACGACCTAGTGTGTAGGGCTGGGTGG
196 AGCTCAGCTACAATATTACTGATATATGCCGCATTTGGTACGACCTAGTGTGTAGGGCTGGGTGG
9373562 GTGTTTTAAACCCCACATGGTGTGTGGGGATGATCGGAGATGGTGTGTAGAGGCTGGTGGGTAGG
261 GTGTTTTAAACCCCACATGGTGTGTGGGGATGATCGGAGATGGTGTGTAGAGGCTGGTGGGTAGG
*
9373627 ATACTGGTTTTTGTTACTATATGCATACTGTATTTGAGAAGGGCTAAGGTCCTAATTTATATATG
326 ATACTGGTTTTTGTTACTATATGCATACTGTATTTGAGAAGGACTAAGGTCCTAATTTATATATG
9373692 AAACTGTATCTGAATAAGCTAAGGCCTAAACTGTATCTATATTTGTAATGGACTTAGGCCCAGCC
391 AAACTGTATCTGAATAAGCTAAGGCCTAAACTGTATCTATATTTGTAATGGACTTAGGCCCAGCC
9373757 TGCATTTAACTGATGACTATTGTTTGACTGTATGCATGTCTTCTGTGGGGATTACACACTGAGTT
456 TGCATTTAACTGATGACTATTGTTTGACTGTATGCATGTCTTCTGTGGGGATTACACACTGAGTT
9373822 TACATAAACTCACCCCTTTCTATTTTAACTGTATAGGTAATCCCCAAACTTAGAAGGACCTGTGC
521 TACATAAACTCACCCCTTTCTATTTTAACTGTATAGGTAATCCCCAAACTTAGAAGGACCTGTGC
9373887 AACGGAGGACTTAACGGTATCTACATGTTTATCGCCATACTTAAACTTCATTTATGGTTTTTAAT
586 AACGGAGGACTTAACGGTATCTACATGTTTATCGCCATACTTAAACTTCATTTATGGTTTTTAAT
9373952 CTTTATTCTTATGGGTTATTTTTTATGTAATTTGGGACTTTTGGACGGTTTGCATTTATTTTGGA
651 CTTTATTCTTATGGGTTATTTTTTATGTAATTTGGGACTTTTGGACGGTTTGCATTTATTTTGGA
*
9374017 TTTTAACTGTTTTCATGAACTTTTGAATTGCAATGAAAATTCAGTTTTATTAAATACAACGTTTT
716 TTTTAACTGTTTTCATGAACTTTTGAATTGCAATGAAAACTCAGTTTTATTAAATACAACGTTTT
*
9374082 TCCTAAACGCGAATGATTTTCTTTAAATATCACAGTTTTAAAAGCTTCGGCTACAGAATATGTTT
781 TCCTAAACGCGAATGATTTTCTTTAAATATCACAGTTTTAAAAGCTTCAGCTACAGAATATGTTT
*
9374147 TAAAATGATTCAAATTA
846 TAAAACGATTCAAATTA
9374164 ATG
1 ATG
9374167 AGCAAATAAT
Statistics
Matches: 860, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
862 860 1.00
ACGTcount: A:0.27, C:0.15, G:0.21, T:0.37
Consensus pattern (862 bp):
ATGTGATGTATGTATTAAGCATGTTAATTTATGCATGTTTACTGATCTGCATGTATGACTGATAA
CTGAATTTTAGCATGTAAGCATGTATTCCTATATATCTGTATTGAGCATGTCTAGTTGCATCTGC
ATTGGGGTGGCATAATTGATTATTGGAGGAAGCGTACTGGAAGACTTTCATGCCTATTATCTAGC
AGCTCAGCTACAATATTACTGATATATGCCGCATTTGGTACGACCTAGTGTGTAGGGCTGGGTGG
GTGTTTTAAACCCCACATGGTGTGTGGGGATGATCGGAGATGGTGTGTAGAGGCTGGTGGGTAGG
ATACTGGTTTTTGTTACTATATGCATACTGTATTTGAGAAGGACTAAGGTCCTAATTTATATATG
AAACTGTATCTGAATAAGCTAAGGCCTAAACTGTATCTATATTTGTAATGGACTTAGGCCCAGCC
TGCATTTAACTGATGACTATTGTTTGACTGTATGCATGTCTTCTGTGGGGATTACACACTGAGTT
TACATAAACTCACCCCTTTCTATTTTAACTGTATAGGTAATCCCCAAACTTAGAAGGACCTGTGC
AACGGAGGACTTAACGGTATCTACATGTTTATCGCCATACTTAAACTTCATTTATGGTTTTTAAT
CTTTATTCTTATGGGTTATTTTTTATGTAATTTGGGACTTTTGGACGGTTTGCATTTATTTTGGA
TTTTAACTGTTTTCATGAACTTTTGAATTGCAATGAAAACTCAGTTTTATTAAATACAACGTTTT
TCCTAAACGCGAATGATTTTCTTTAAATATCACAGTTTTAAAAGCTTCAGCTACAGAATATGTTT
TAAAACGATTCAAATTA
Found at i:9374641 original size:24 final size:23
Alignment explanation
Indices: 9374614--9374676 Score: 90
Period size: 24 Copynumber: 2.6 Consensus size: 23
9374604 TAATCAACCT
9374614 TTCACTTGTCATCTTCCTTAACTC
1 TTCACTT-TCATCTTCCTTAACTC
*
9374638 TTCACCTATCATCTTCCTTAACTC
1 TTCA-CTTTCATCTTCCTTAACTC
9374662 TTCACCTTTCATCTT
1 TTCA-CTTTCATCTT
9374677 ATTGTAACCC
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
24 34 0.94
25 2 0.06
ACGTcount: A:0.17, C:0.35, G:0.02, T:0.46
Consensus pattern (23 bp):
TTCACTTTCATCTTCCTTAACTC
Found at i:9382623 original size:16 final size:16
Alignment explanation
Indices: 9382604--9382642 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
9382594 GCTGAGTTCT
* *
9382604 TTTCTTTTGTTTTTTC
1 TTTCTTTCGTTTTTGC
*
9382620 TTTCATTCGTTTTTGC
1 TTTCTTTCGTTTTTGC
9382636 TTTCTTT
1 TTTCTTT
9382643 GCTACTGCCA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.03, C:0.15, G:0.08, T:0.74
Consensus pattern (16 bp):
TTTCTTTCGTTTTTGC
Found at i:9387112 original size:16 final size:16
Alignment explanation
Indices: 9387093--9387131 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
9387083 GCTGAGTTCT
* *
9387093 TTTCTTTTGTTTTTTC
1 TTTCTTTCGTTTTTGC
*
9387109 TTTCATTCGTTTTTGC
1 TTTCTTTCGTTTTTGC
9387125 TTTCTTT
1 TTTCTTT
9387132 GCTACTGCCA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.03, C:0.15, G:0.08, T:0.74
Consensus pattern (16 bp):
TTTCTTTCGTTTTTGC
Found at i:9389974 original size:20 final size:20
Alignment explanation
Indices: 9389937--9389979 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
9389927 TATTAATTAC
9389937 AAAAATTAAAATACAATAGTT
1 AAAAATTAAAATACAATA-TT
* *
9389958 AAAAATTTAATTA-AATATT
1 AAAAATTAAAATACAATATT
9389977 AAA
1 AAA
9389980 GGCATAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 5 0.25
20 4 0.20
21 11 0.55
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (20 bp):
AAAAATTAAAATACAATATT
Found at i:9390237 original size:81 final size:81
Alignment explanation
Indices: 9390102--9390263 Score: 315
Period size: 81 Copynumber: 2.0 Consensus size: 81
9390092 TATTAGTTGT
9390102 ATAAGACAATTTAACTTAAACACGCATAGAAACAATCCTAATCAAACCTTCTCCAATGAATCATG
1 ATAAGACAATTTAACTTAAACACGCATAGAAACAATCCTAATCAAACCTTCTCCAATGAATCATG
9390167 ATAATCATATAAAAAA
66 ATAATCATATAAAAAA
*
9390183 ATAAGACAATTTAACTTAAAGACGCATAGAAACAATCCTAATCAAACCTTCTCCAATGAATCATG
1 ATAAGACAATTTAACTTAAACACGCATAGAAACAATCCTAATCAAACCTTCTCCAATGAATCATG
9390248 ATAATCATATAAAAAA
66 ATAATCATATAAAAAA
9390264 GGGCATGACT
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 80 1.00
ACGTcount: A:0.49, C:0.19, G:0.07, T:0.25
Consensus pattern (81 bp):
ATAAGACAATTTAACTTAAACACGCATAGAAACAATCCTAATCAAACCTTCTCCAATGAATCATG
ATAATCATATAAAAAA
Found at i:9391442 original size:16 final size:17
Alignment explanation
Indices: 9391404--9391435 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
9391394 CCGGTTTTTT
9391404 ATTTAA-TTTTTAAATA
1 ATTTAATTTTTTAAATA
9391420 ATTTAATTTTTTAAAT
1 ATTTAATTTTTTAAAT
9391436 TTTTAATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
ATTTAATTTTTTAAATA
Found at i:9400539 original size:19 final size:19
Alignment explanation
Indices: 9400515--9400551 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
9400505 CGCATGTAAT
*
9400515 ATAATATTTAAATATTGAC
1 ATAATATATAAATATTGAC
*
9400534 ATAATATATACATATTGA
1 ATAATATATAAATATTGA
9400552 AAAAAAAATC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.49, C:0.05, G:0.05, T:0.41
Consensus pattern (19 bp):
ATAATATATAAATATTGAC
Found at i:9400716 original size:13 final size:14
Alignment explanation
Indices: 9400686--9400714 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
9400676 ATATATGGTT
9400686 AATAGAAATAAAAA
1 AATAGAAATAAAAA
9400700 AATAGAAATAAAAA
1 AATAGAAATAAAAA
9400714 A
1 A
9400715 TATACACGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.79, C:0.00, G:0.07, T:0.14
Consensus pattern (14 bp):
AATAGAAATAAAAA
Found at i:9406194 original size:16 final size:16
Alignment explanation
Indices: 9406170--9406212 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
9406160 GGTTGGGGGA
*
9406170 AATGGAATAGGGTTGT
1 AATGGAATAGAGTTGT
*
9406186 AATGAAATAGAGTTGT
1 AATGGAATAGAGTTGT
9406202 AATGGAATAGA
1 AATGGAATAGA
9406213 ACTGTAATCA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.42, C:0.00, G:0.30, T:0.28
Consensus pattern (16 bp):
AATGGAATAGAGTTGT
Found at i:9406437 original size:15 final size:15
Alignment explanation
Indices: 9406417--9406448 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
9406407 TTATTATTAA
9406417 ATATAATTTAATAAT
1 ATATAATTTAATAAT
9406432 ATATAATTTAATAAT
1 ATATAATTTAATAAT
9406447 AT
1 AT
9406449 TCTTAATGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
ATATAATTTAATAAT
Found at i:9406820 original size:45 final size:45
Alignment explanation
Indices: 9406755--9406841 Score: 138
Period size: 45 Copynumber: 1.9 Consensus size: 45
9406745 GGTTGCAGAC
* *
9406755 ATCTCCACCTTCAACGTAATGGTTCCTCTTCTTCTTTAGACCGAT
1 ATCTCCACCTTCAACATAATGGTTCCTCTTCTTCTTCAGACCGAT
* *
9406800 ATCTCCACCTTCGACATAATGGTTTCTCTTCTTCTTCAGACC
1 ATCTCCACCTTCAACATAATGGTTCCTCTTCTTCTTCAGACC
9406842 ACCCAATGGT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.20, C:0.32, G:0.10, T:0.38
Consensus pattern (45 bp):
ATCTCCACCTTCAACATAATGGTTCCTCTTCTTCTTCAGACCGAT
Found at i:9407355 original size:20 final size:21
Alignment explanation
Indices: 9407318--9407361 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
9407308 AAATATGTTA
** *
9407318 AAAATATTTTAATTATTATTT
1 AAAATATTTTAAAAATTAATT
9407339 AAAA-ATTTTAAAAATTAATT
1 AAAATATTTTAAAAATTAATT
9407359 AAA
1 AAA
9407362 TATGTAATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 16 0.80
21 4 0.20
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
AAAATATTTTAAAAATTAATT
Found at i:9408327 original size:19 final size:19
Alignment explanation
Indices: 9408303--9408363 Score: 61
Period size: 20 Copynumber: 3.1 Consensus size: 19
9408293 TATTTTAAAA
9408303 TTCTTTTTATTTTCTTATT
1 TTCTTTTTATTTTCTTATT
*
9408322 TTCTTTTATATTAT-TTATCT
1 TTCTTTT-TATTTTCTTAT-T
* *
9408342 TTCTTTATTTTTTTCCTATT
1 TTCTTT-TTATTTTCTTATT
9408362 TT
1 TT
9408364 TTCTTCCTCC
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
19 11 0.32
20 19 0.56
21 4 0.12
ACGTcount: A:0.13, C:0.11, G:0.00, T:0.75
Consensus pattern (19 bp):
TTCTTTTTATTTTCTTATT
Found at i:9408361 original size:28 final size:27
Alignment explanation
Indices: 9408306--9408368 Score: 69
Period size: 28 Copynumber: 2.4 Consensus size: 27
9408296 TTTAAAATTC
*
9408306 TTTTTAT-TTTCTTATTTTCTTTTATA
1 TTTTTATCTTTCTTATTTTCTTTCATA
*
9408332 TTATTTATCTTTCTTTATTTT-TTTCCTA
1 TT-TTTATCTTTC-TTATTTTCTTTCATA
9408360 TTTTT-TCTT
1 TTTTTATCTT
9408369 CCTCCTTTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
26 6 0.19
27 8 0.25
28 11 0.34
29 7 0.22
ACGTcount: A:0.13, C:0.11, G:0.00, T:0.76
Consensus pattern (27 bp):
TTTTTATCTTTCTTATTTTCTTTCATA
Found at i:9408661 original size:21 final size:21
Alignment explanation
Indices: 9408636--9408676 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
9408626 ATTGAACCAA
*
9408636 TTTTATCTATTTTTTAAATAT
1 TTTTATCAATTTTTTAAATAT
*
9408657 TTTTATGAATTTTTTAAATA
1 TTTTATCAATTTTTTAAATA
9408677 ATTTATTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.63
Consensus pattern (21 bp):
TTTTATCAATTTTTTAAATAT
Found at i:9411876 original size:21 final size:22
Alignment explanation
Indices: 9411823--9411881 Score: 70
Period size: 22 Copynumber: 2.7 Consensus size: 22
9411813 AGGACACATG
9411823 CATAGTATATATATAAAAATGT
1 CATAGTATATATATAAAAATGT
9411845 -ATACGTA-ATATAATAAAAAT-T
1 CATA-GTATATAT-ATAAAAATGT
9411866 ACATAGTATATATATA
1 -CATAGTATATATATA
9411882 TGTTAGTAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
21 8 0.25
22 17 0.53
23 7 0.22
ACGTcount: A:0.53, C:0.05, G:0.07, T:0.36
Consensus pattern (22 bp):
CATAGTATATATATAAAAATGT
Found at i:9412507 original size:25 final size:22
Alignment explanation
Indices: 9412479--9412528 Score: 55
Period size: 25 Copynumber: 2.1 Consensus size: 22
9412469 AAAATATAAC
*
9412479 AGTAATAAAGTATAATATTATGAAT
1 AGTAATAAAAT-TAA-ATTA-GAAT
*
9412504 AGTATTAAAATTAAATTAGAAT
1 AGTAATAAAATTAAATTAGAAT
9412526 AGT
1 AGT
9412529 GAGGATGTCG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 7 0.30
23 4 0.17
24 3 0.13
25 9 0.39
ACGTcount: A:0.52, C:0.00, G:0.12, T:0.36
Consensus pattern (22 bp):
AGTAATAAAATTAAATTAGAAT
Found at i:9412587 original size:20 final size:21
Alignment explanation
Indices: 9412551--9412589 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
9412541 ACCATTTTCA
*
9412551 AATCGAGTTTTAGAAAATGGG
1 AATCGAGTTTTAAAAAATGGG
9412572 AATCGA-TTTTAAAAAATG
1 AATCGAGTTTTAAAAAATG
9412590 AAAACGGGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.44, C:0.05, G:0.21, T:0.31
Consensus pattern (21 bp):
AATCGAGTTTTAAAAAATGGG
Found at i:9413746 original size:26 final size:25
Alignment explanation
Indices: 9413711--9413759 Score: 71
Period size: 26 Copynumber: 1.9 Consensus size: 25
9413701 AGCAAATAAA
* *
9413711 AAAATGTAATATTTAATAATAAATTT
1 AAAATATAATATATAATAA-AAATTT
9413737 AAAATATAATATATAATAAAAAT
1 AAAATATAATATATAATAAAAAT
9413760 ATATTTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 4 0.19
26 17 0.81
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (25 bp):
AAAATATAATATATAATAAAAATTT
Found at i:9413795 original size:17 final size:17
Alignment explanation
Indices: 9413737--9413795 Score: 54
Period size: 17 Copynumber: 3.5 Consensus size: 17
9413727 TAATAAATTT
9413737 AAAATATAA-TATATAA
1 AAAATATAATTATATAA
9413753 TAAAA-ATATATT-TAT-A
1 -AAAATATA-ATTATATAA
*
9413769 AGAATAATAATTATATAA
1 AAAAT-ATAATTATATAA
9413787 AAAATATAA
1 AAAATATAA
9413796 AATATATTGG
Statistics
Matches: 34, Mismatches: 2, Indels: 12
0.71 0.04 0.25
Matches are distributed among these distances:
15 3 0.09
16 7 0.21
17 18 0.53
18 6 0.18
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (17 bp):
AAAATATAATTATATAA
Done.