Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 38 of 255
Found at i:9997755 original size:41 final size:41
Alignment explanation
Indices: 9997678--9997755 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
9997668 TTAGTATCTC
* * *
9997678 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
9997719 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
9997756 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:10000023 original size:26 final size:26
Alignment explanation
Indices: 9999994--10000043 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
9999984 AATTAATGCC
*
9999994 AATTAAACAGGAATATTGAATGTTCT
1 AATTAAACAGAAATATTGAATGTTCT
**
10000020 AATTAAATTGAAATATTGAATGTT
1 AATTAAACAGAAATATTGAATGTT
10000044 TTCTTTTATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.44, C:0.04, G:0.14, T:0.38
Consensus pattern (26 bp):
AATTAAACAGAAATATTGAATGTTCT
Found at i:10002141 original size:26 final size:26
Alignment explanation
Indices: 10002112--10002161 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
10002102 AATTAATGCT
10002112 AATTAAACTAAAATATTGAATGTTAG
1 AATTAAACTAAAATATTGAATGTTAG
* *
10002138 AATTAAATTGAAATATTGAATGTT
1 AATTAAACTAAAATATTGAATGTT
10002162 TTCTTTATTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.48, C:0.02, G:0.12, T:0.38
Consensus pattern (26 bp):
AATTAAACTAAAATATTGAATGTTAG
Found at i:10004062 original size:9 final size:9
Alignment explanation
Indices: 10004043--10004073 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
10004033 GACGTTGAGA
10004043 AAAATAAAAT
1 AAAA-AAAAT
10004053 AAAAAAAAT
1 AAAAAAAAT
10004062 AAAAAAAAT
1 AAAAAAAAT
10004071 AAA
1 AAA
10004074 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 17 0.81
10 4 0.19
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (9 bp):
AAAAAAAAT
Found at i:10009012 original size:26 final size:26
Alignment explanation
Indices: 10008983--10009032 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
10008973 AATTAATGCT
10008983 AATTAAACTGAAATATTCAATGTTAG
1 AATTAAACTGAAATATTCAATGTTAG
* *
10009009 AATTAAATTGAAATATTGAATGTT
1 AATTAAACTGAAATATTCAATGTT
10009033 TTCTTTTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.46, C:0.04, G:0.12, T:0.38
Consensus pattern (26 bp):
AATTAAACTGAAATATTCAATGTTAG
Found at i:10010210 original size:26 final size:26
Alignment explanation
Indices: 10010181--10010236 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
10010171 TGATAAAAAT
10010181 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
10010207 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
10010233 TGAT
1 TGAT
10010237 GGGCATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:10011709 original size:26 final size:26
Alignment explanation
Indices: 10011680--10011732 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
10011670 TTTACAGTTT
*
10011680 TACCCTTAAGAGATAAATT-ACCGAAA
1 TACCCCTAAG-GATAAATTGACCGAAA
* *
10011706 TACCCCTAAGGTTAAATTGACCTAAA
1 TACCCCTAAGGATAAATTGACCGAAA
10011732 T
1 T
10011733 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.42, C:0.21, G:0.11, T:0.26
Consensus pattern (26 bp):
TACCCCTAAGGATAAATTGACCGAAA
Found at i:10015046 original size:14 final size:14
Alignment explanation
Indices: 10015027--10015056 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
10015017 CATTCCGAAG
*
10015027 TATATATATATACA
1 TATATATACATACA
10015041 TATATATACATACA
1 TATATATACATACA
10015055 TA
1 TA
10015057 AGTATGCCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.50, C:0.10, G:0.00, T:0.40
Consensus pattern (14 bp):
TATATATACATACA
Found at i:10015569 original size:27 final size:27
Alignment explanation
Indices: 10015538--10015715 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
10015528 TAAATTGTAC
10015538 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
10015565 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
10015591 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
10015619 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
10015647 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
10015674 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
10015701 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
10015716 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:10015652 original size:82 final size:81
Alignment explanation
Indices: 10015539--10015694 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
10015529 AAATTGTACA
* *
10015539 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
10015603 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
10015620 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
10015685 TGCGAGTTGA
65 TGCGAATTGA
10015695 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:10015706 original size:82 final size:81
Alignment explanation
Indices: 10015535--10015715 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
10015525 GATTAAATTG
* *
10015535 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
10015600 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
10015616 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
10015680 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
10015698 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
10015716 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:10023451 original size:27 final size:27
Alignment explanation
Indices: 10023420--10023569 Score: 185
Period size: 27 Copynumber: 5.6 Consensus size: 27
10023410 TAAATTGTAC
10023420 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
10023447 TGCACTAAGTGTGCGAATTGACCATGC
1 AGCACTAAGTGTGCGATTTGACTATGT
*
10023474 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
10023502 -GCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
10023528 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
10023555 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
10023570 GACTCAATAT
Statistics
Matches: 107, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
26 9 0.08
27 90 0.84
28 8 0.07
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:10023560 original size:81 final size:81
Alignment explanation
Indices: 10023421--10023569 Score: 208
Period size: 81 Copynumber: 1.8 Consensus size: 81
10023411 AAATTGTACA
* * * *
10023421 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGTGCGAATTGACCATACAGCACTAAGTGT
10023486 GCGAGTTTGACTATGT
66 GCGAGTTTGACTATGT
* * ** * *
10023502 GCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGT
1 GCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGTGCGAATTGACCATACAGCACTAAGTGT
10023567 GCG
66 GCG
10023570 GACTCAATAT
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
81 58 1.00
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.31
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGTGCGAATTGACCATACAGCACTAAGTGT
GCGAGTTTGACTATGT
Found at i:10029010 original size:7 final size:7
Alignment explanation
Indices: 10028998--10029040 Score: 56
Period size: 7 Copynumber: 6.4 Consensus size: 7
10028988 TAATTTAATT
10028998 AATTAAA
1 AATTAAA
10029005 AATTAAA
1 AATTAAA
10029012 AA-T-AA
1 AATTAAA
10029017 AATT-AA
1 AATTAAA
10029023 AATTAAA
1 AATTAAA
10029030 AATTAAGA
1 AATTAA-A
10029038 AAT
1 AAT
10029041 AGGTCTTACC
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
5 4 0.12
6 8 0.24
7 17 0.52
8 4 0.12
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (7 bp):
AATTAAA
Found at i:10029018 original size:12 final size:12
Alignment explanation
Indices: 10029003--10029041 Score: 51
Period size: 12 Copynumber: 3.1 Consensus size: 12
10028993 TAATTAATTA
10029003 AAAATTAAAAAT
1 AAAATTAAAAAT
*
10029015 AAAATTAAAATT
1 AAAATTAAAAAT
10029027 AAAAATTAAGAAAT
1 -AAAATTAA-AAAT
10029041 A
1 A
10029042 GGTCTTACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
12 11 0.48
13 9 0.39
14 3 0.13
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.26
Consensus pattern (12 bp):
AAAATTAAAAAT
Found at i:10041282 original size:13 final size:13
Alignment explanation
Indices: 10041264--10041291 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
10041254 TGGATTGAAT
10041264 TGCTTAAGGATTA
1 TGCTTAAGGATTA
10041277 TGCTTAAGGATTA
1 TGCTTAAGGATTA
10041290 TG
1 TG
10041292 AGTCGTAGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.07, G:0.25, T:0.39
Consensus pattern (13 bp):
TGCTTAAGGATTA
Found at i:10046599 original size:12 final size:13
Alignment explanation
Indices: 10046582--10046620 Score: 55
Period size: 12 Copynumber: 3.2 Consensus size: 13
10046572 CCGACTCTCA
10046582 TCTTTGTCTTT-G
1 TCTTTGTCTTTGG
10046594 TCTTTGTCTTTGG
1 TCTTTGTCTTTGG
*
10046607 TCTTTCTC-TTGG
1 TCTTTGTCTTTGG
10046619 TC
1 TC
10046621 ATAGTGATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 17 0.68
13 8 0.32
ACGTcount: A:0.00, C:0.21, G:0.18, T:0.62
Consensus pattern (13 bp):
TCTTTGTCTTTGG
Found at i:10046611 original size:7 final size:6
Alignment explanation
Indices: 10046582--10046616 Score: 52
Period size: 6 Copynumber: 5.7 Consensus size: 6
10046572 CCGACTCTCA
*
10046582 TCTTTG TCTTTG TCTTTG TCTTTGG TCTTTC TCTT
1 TCTTTG TCTTTG TCTTTG TCTTT-G TCTTTG TCTT
10046617 GGTCATAGTG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
6 21 0.78
7 6 0.22
ACGTcount: A:0.00, C:0.20, G:0.14, T:0.66
Consensus pattern (6 bp):
TCTTTG
Found at i:10047809 original size:33 final size:33
Alignment explanation
Indices: 10047753--10047816 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
10047743 TTATTTGCAT
*
10047753 ACTGTACTGAAATGGGCTAAGGCCTAGACTGCC
1 ACTGTACTGAAATGGGCTAAGGCCCAGACTGCC
*
10047786 ACTGATACT-AAATGGGCTTAGGCCCAGACTG
1 ACTG-TACTGAAATGGGCTAAGGCCCAGACTG
10047817 TTTCTATTGC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 24 0.86
34 4 0.14
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.22
Consensus pattern (33 bp):
ACTGTACTGAAATGGGCTAAGGCCCAGACTGCC
Found at i:10048286 original size:1 final size:1
Alignment explanation
Indices: 10048280--10048315 Score: 72
Period size: 1 Copynumber: 36.0 Consensus size: 1
10048270 CATCGAGTCC
10048280 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
10048316 CAGACATTAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 35 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:10049324 original size:23 final size:23
Alignment explanation
Indices: 10049249--10049342 Score: 118
Period size: 23 Copynumber: 4.0 Consensus size: 23
10049239 GCTTTATCAT
*
10049249 ATAACTGGAGGCCTAA-CCTCTTTGA
1 ATAACTGG-GGCATAAGCC-CTTT-A
* *
10049274 ATAAATGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCC-TTTA
10049298 ATAACTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTA
10049321 ATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTT
10049343 TTCACTTCCT
Statistics
Matches: 62, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
23 26 0.42
24 24 0.39
25 12 0.19
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (23 bp):
ATAACTGGGGCATAAGCCCTTTA
Found at i:10049330 original size:47 final size:49
Alignment explanation
Indices: 10049249--10049343 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
10049239 GCTTTATCAT
*
10049249 ATAACTGGAGGCCTAACCTCTTTGAATAAATGGGGCAAAAGCCCTTTTA
1 ATAACTGGAGGCATAACCTCTTTGAATAAATGGGGCAAAAGCCCTTTTA
* *
10049298 ATAACTGG-GGCATAAGCC-CTTT-AATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGAGGCATAA-CCTCTTTGAATAAATGGGGCAAAAGCCCTTTT
10049344 TCACTTCCTC
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
47 22 0.52
48 10 0.24
49 10 0.24
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (49 bp):
ATAACTGGAGGCATAACCTCTTTGAATAAATGGGGCAAAAGCCCTTTTA
Found at i:10049417 original size:20 final size:20
Alignment explanation
Indices: 10049392--10049458 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
10049382 TTATGATTAC
*
10049392 ATCATGTGCATATCAAACAT
1 ATCATGTGCATATCATACAT
*
10049412 ATCATGTGCACATCATACAT
1 ATCATGTGCATATCATACAT
*
10049432 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
10049452 ACCATGT
1 ATCATGT
10049459 TTATCAACAT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.34, C:0.22, G:0.12, T:0.31
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:10049473 original size:17 final size:18
Alignment explanation
Indices: 10049442--10049475 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
10049432 GTCATGTGCA
10049442 TATCATACATACCATGTT
1 TATCATACATACCATGTT
*
10049460 TATCA-ACATCCCATGT
1 TATCATACATACCATGT
10049476 ATTAAATTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.35
Consensus pattern (18 bp):
TATCATACATACCATGTT
Found at i:10049527 original size:25 final size:25
Alignment explanation
Indices: 10049495--10049542 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
10049485 ATACATAATC
* * *
10049495 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
10049520 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
10049543 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:10057069 original size:31 final size:31
Alignment explanation
Indices: 10057031--10057094 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
10057021 CCTTTTCATA
10057031 TTTCATATTTCACAACACTGGGCCGAAGCCT
1 TTTCATATTTCACAACACTGGGCCGAAGCCT
* **
10057062 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCACAACACTGGGCCGAAGCCT
10057093 TT
1 TT
10057095 ACTGTAAATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATATTTCACAACACTGGGCCGAAGCCT
Found at i:10057344 original size:23 final size:23
Alignment explanation
Indices: 10057288--10057380 Score: 125
Period size: 23 Copynumber: 4.0 Consensus size: 23
10057278 GCTTTATCAT
*
10057288 ATAACTGGAGGCCT-AGCCTCTTTGA
1 ATAACTGG-GGCATAAGCC-CTTT-A
* *
10057313 ATAAATGGGGCAAAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTA
10057336 ATAACTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTA
10057359 ATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTT
10057381 TTCACTTCCT
Statistics
Matches: 62, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
23 44 0.71
24 7 0.11
25 11 0.18
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.26
Consensus pattern (23 bp):
ATAACTGGGGCATAAGCCCTTTA
Found at i:10057456 original size:20 final size:20
Alignment explanation
Indices: 10057431--10057497 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
10057421 TTATGATTAC
10057431 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
10057451 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
10057471 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
10057491 ACCATGT
1 ATCATGT
10057498 TTATCAACAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:10057462 original size:11 final size:11
Alignment explanation
Indices: 10057431--10057486 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
10057421 TTATGATTAC
10057431 ATCATGTGCAT
1 ATCATGTGCAT
*
10057442 ATCA--TACAT
1 ATCATGTGCAT
10057451 ATCATGTGCAT
1 ATCATGTGCAT
*
10057462 ATCA--TACAT
1 ATCATGTGCAT
*
10057471 GTCATGTGCAT
1 ATCATGTGCAT
10057482 ATCAT
1 ATCAT
10057487 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:10057512 original size:17 final size:18
Alignment explanation
Indices: 10057481--10057514 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
10057471 GTCATGTGCA
10057481 TATCATACATACCATGTT
1 TATCATACATACCATGTT
*
10057499 TATCA-ACATCCCATGT
1 TATCATACATACCATGT
10057515 ATTAAATTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.35
Consensus pattern (18 bp):
TATCATACATACCATGTT
Found at i:10057566 original size:25 final size:25
Alignment explanation
Indices: 10057534--10057581 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
10057524 ATACATAATC
* *
10057534 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
10057559 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
10057582 CATGTTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:10058796 original size:6 final size:5
Alignment explanation
Indices: 10058767--10058848 Score: 55
Period size: 6 Copynumber: 15.8 Consensus size: 5
10058757 TATGTCTTTC
*
10058767 AAAAT AAAAT --AAT AAAATT GAAAT GAAAAT AAAAAT AAAAAGT AAAAT
1 AAAAT AAAAT AAAAT AAAA-T AAAAT -AAAAT -AAAAT -AAAA-T AAAAT
*
10058815 AAAAGT AAAAT -AAA- AAAAT AAAAA AAGAAT AAAA
1 AAAA-T AAAAT AAAAT AAAAT AAAAT AA-AAT AAAA
10058849 AGATAGGAGG
Statistics
Matches: 63, Mismatches: 5, Indels: 18
0.73 0.06 0.21
Matches are distributed among these distances:
3 3 0.05
4 6 0.10
5 22 0.35
6 31 0.49
7 1 0.02
ACGTcount: A:0.77, C:0.00, G:0.06, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:10058818 original size:11 final size:11
Alignment explanation
Indices: 10058798--10058829 Score: 55
Period size: 11 Copynumber: 2.8 Consensus size: 11
10058788 AATGAAAATA
10058798 AAAATAAAAAGT
1 AAAAT-AAAAGT
10058810 AAAATAAAAGT
1 AAAATAAAAGT
10058821 AAAATAAAA
1 AAAATAAAA
10058830 AAATAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 15 0.75
12 5 0.25
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.16
Consensus pattern (11 bp):
AAAATAAAAGT
Found at i:10058845 original size:19 final size:19
Alignment explanation
Indices: 10058810--10058849 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
10058800 AATAAAAAGT
*
10058810 AAAATAAAAGTAAAATAAA
1 AAAATAAAAGAAAAATAAA
10058829 AAAATAAAA-AAAGAATAAA
1 AAAATAAAAGAAA-AATAAA
10058848 AA
1 AA
10058850 GATAGGAGGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 2 0.11
19 17 0.89
ACGTcount: A:0.82, C:0.00, G:0.05, T:0.12
Consensus pattern (19 bp):
AAAATAAAAGAAAAATAAA
Found at i:10058847 original size:24 final size:23
Alignment explanation
Indices: 10058767--10058848 Score: 76
Period size: 24 Copynumber: 3.4 Consensus size: 23
10058757 TATGTCTTTC
* *
10058767 AAAATAAAATAATAAAATTGAAATG
1 AAAATAAAATAA-AAAA-TAAAATA
*
10058792 AAAATAAAAATAAAAAGTAAAATA
1 AAAAT-AAAATAAAAAATAAAATA
*
10058816 AAAGTAAAATAAAAAAATAAAA-A
1 AAAATAAAAT-AAAAAATAAAATA
10058839 AAGAATAAAA
1 AA-AATAAAA
10058849 AGATAGGAGG
Statistics
Matches: 48, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
23 8 0.17
24 25 0.52
25 8 0.17
26 7 0.15
ACGTcount: A:0.77, C:0.00, G:0.06, T:0.17
Consensus pattern (23 bp):
AAAATAAAATAAAAAATAAAATA
Found at i:10064200 original size:13 final size:13
Alignment explanation
Indices: 10064178--10064210 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
10064168 AAGGCTTTGT
10064178 TTAT-TAAACTAA
1 TTATCTAAACTAA
10064190 TTATCTAAACTAA
1 TTATCTAAACTAA
*
10064203 TTAACTAA
1 TTATCTAA
10064211 TTTAACTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:10069219 original size:24 final size:25
Alignment explanation
Indices: 10069182--10069228 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
10069172 ATTTTCCAAG
*
10069182 TTCCATTACTTATTCCACTAAAAGT
1 TTCCATTACATATTCCACTAAAAGT
* *
10069207 TTCCATT-CATATTTCAGTAAAA
1 TTCCATTACATATTCCACTAAAA
10069229 TTGGGCCAGA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 12 0.63
25 7 0.37
ACGTcount: A:0.34, C:0.21, G:0.04, T:0.40
Consensus pattern (25 bp):
TTCCATTACATATTCCACTAAAAGT
Found at i:10074844 original size:55 final size:54
Alignment explanation
Indices: 10074698--10074894 Score: 245
Period size: 55 Copynumber: 3.6 Consensus size: 54
10074688 GAACTAAGAT
* * * * *
10074698 AAGGATATCATGTAAGACCATGCCAAGGCAAGGCAGTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * * * *
10074752 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTGTAAAGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC
* *
10074807 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
*
10074860 AAGGATACCATGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
10074895 ATGGTAAGTT
Statistics
Matches: 122, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
52 4 0.03
53 32 0.26
54 40 0.33
55 42 0.34
56 4 0.03
ACGTcount: A:0.37, C:0.18, G:0.25, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:10082157 original size:19 final size:19
Alignment explanation
Indices: 10082133--10082169 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
10082123 ATTGCAATTT
* *
10082133 AATTTTGTTTTTTTTACTA
1 AATTTTCTTTTCTTTACTA
10082152 AATTTTCTTTTCTTTACT
1 AATTTTCTTTTCTTTACT
10082170 TTTGGCAGGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.19, C:0.11, G:0.03, T:0.68
Consensus pattern (19 bp):
AATTTTCTTTTCTTTACTA
Found at i:10095355 original size:23 final size:23
Alignment explanation
Indices: 10095296--10095367 Score: 83
Period size: 23 Copynumber: 3.1 Consensus size: 23
10095286 AAATATGATG
10095296 TAATAATAATATAAAATAACAT-A
1 TAATAA-AATATAAAATAACATAA
* * *
10095319 TATTAAAGTGTAAAATAACATAA
1 TAATAAAATATAAAATAACATAA
**
10095342 TAATAAAATATAAAATAGTATAA
1 TAATAAAATATAAAATAACATAA
10095365 TAA
1 TAA
10095368 ATATTATGTA
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
22 13 0.32
23 27 0.68
ACGTcount: A:0.62, C:0.03, G:0.04, T:0.31
Consensus pattern (23 bp):
TAATAAAATATAAAATAACATAA
Found at i:10095387 original size:24 final size:25
Alignment explanation
Indices: 10095355--10095420 Score: 66
Period size: 24 Copynumber: 2.6 Consensus size: 25
10095345 TAAAATATAA
* *
10095355 AATAGTATAATAAATATTATGT-AAT
1 AATAATATAATAAATA-TAGGTAAAT
10095380 AA-AATATAATATAGATATAGGTAAAT
1 AATAATATAATA-A-ATATAGGTAAAT
10095406 AATAATAT-ATAAATA
1 AATAATATAATAAATA
10095421 AAGTTTTTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
24 11 0.31
25 8 0.23
26 11 0.31
27 5 0.14
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.35
Consensus pattern (25 bp):
AATAATATAATAAATATAGGTAAAT
Found at i:10097183 original size:88 final size:87
Alignment explanation
Indices: 10097091--10097373 Score: 276
Period size: 88 Copynumber: 3.2 Consensus size: 87
10097081 GCTTTCTGAC
10097091 AATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTA
1 AATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC-TGAAAGCCAAATCAGCTA
*
10097156 TGTCTTCGATCTACTCCCTGTCG
65 TGTCTTCGATCTGCTCCCTGTCG
* * * * *
10097179 AATACAGAGATGCCAAATCTACTATCTTTGATCTG-TTC-TC-TGACAATA-TAGAGATGCCAAA
1 AATACAGAGATGCCAAA--T-C-ATCTTAGATTTGCTTCAACGT-A-AACACT-GA-AAGCCAAA
* * *
10097240 TCTGC--TGTCTTCGATCTGCTCTCTGAC-
58 TCAGCTATGTCTTCGATCTGCTCCCTGTCG
* * * *
10097267 AATACAGAGTTTCCAAATCATCTTAGATTTCCTTCAATGTAAACACATGAAAGCCAAATCAGCTA
1 AATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC-TGAAAGCCAAATCAGCTA
10097332 TGTCTTCGATCTGCTCTCC-GTCG
65 TGTCTTCGATCTGCTC-CCTGTCG
**
10097355 AATATGGAGATGCCAAATC
1 AATACAGAGATGCCAAATC
10097374 TGTTTCTTTG
Statistics
Matches: 153, Mismatches: 25, Indels: 34
0.72 0.12 0.16
Matches are distributed among these distances:
84 9 0.06
85 18 0.12
86 4 0.03
87 20 0.13
88 48 0.31
89 21 0.14
90 5 0.03
91 18 0.12
92 10 0.07
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.30
Consensus pattern (87 bp):
AATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACTGAAAGCCAAATCAGCTAT
GTCTTCGATCTGCTCCCTGTCG
Found at i:10097283 original size:44 final size:44
Alignment explanation
Indices: 10096985--10097285 Score: 190
Period size: 44 Copynumber: 6.8 Consensus size: 44
10096975 ATCTGTTATT
* * * * * * *
10096985 TTCGATCTACTCTCTGCCAATACAGAGACGCTAAATAT-GTCATC
1 TTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTACT-GTC
* * * *
10097029 TTCGATTTGCTCTCTGACAATACAGAGACGCCAAATCT-GTCATC
1 TTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTACT-GTC
* *
10097073 TTTGATCTGCTTTCTGACAATACAGAGATGCCAAATC-A---TC
1 TTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTACTGTC
* * * * *
10097113 TTAGATTTGCT-TC-AACGTAA-ACACGTGAAAGCCAAATC-AGCTATGTC
1 TTCGATCTGCTCTCTGAC--AATACA-GAG-ATGCCAAATCTA-C--TGTC
* * * *
10097160 TTCGATCTACTCCCTGTCGAATACAGAGATGCCAAATCTACTATC
1 TTCGATCTGCTCTCTGAC-AATACAGAGATGCCAAATCTACTGTC
* * * *
10097205 TTTGATCTGTTCTCTGACAATATAGAGATGCCAAATCTGCTGTC
1 TTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTACTGTC
* *
10097249 TTCGATCTGCTCTCTGACAATACAGAGTTTCCAAATC
1 TTCGATCTGCTCTCTGACAATACAGAGATGCCAAATC
10097286 ATCTTAGATT
Statistics
Matches: 205, Mismatches: 37, Indels: 30
0.75 0.14 0.11
Matches are distributed among these distances:
38 2 0.01
39 5 0.02
40 15 0.07
41 10 0.05
44 127 0.62
45 16 0.08
47 20 0.10
48 6 0.03
49 4 0.02
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (44 bp):
TTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTACTGTC
Found at i:10097311 original size:176 final size:175
Alignment explanation
Indices: 10096985--10097416 Score: 591
Period size: 176 Copynumber: 2.5 Consensus size: 175
10096975 ATCTGTTATT
* * * * * * *
10096985 TTCGATCTACTCTCTG-CCAATACAGAGACGCTAAATATGTCATCTTCGATTTGCTCTCTGACAA
1 TTCGATCTACTCCCTGTCGAATACAGAGATGCCAAATCTGT-ATCTTTGATTTGTTCTCTGACAA
* * *
10097049 TACAGAGACGCCAAATCTGTCATCTTTGATCTGCTTTCTGACAATACAGAGATGCCAAATCATCT
65 TACAGAGATGCCAAATCTGTCATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCATCT
* *
10097114 TAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATGTC
130 TAGATTTCCTTCAACGTAAACACATGAAAGCCAAATCAGCTATGTC
* *
10097160 TTCGATCTACTCCCTGTCGAATACAGAGATGCCAAATCTACTATCTTTGATCTGTTCTCTGACAA
1 TTCGATCTACTCCCTGTCGAATACAGAGATGCCAAATCT-GTATCTTTGATTTGTTCTCTGACAA
* * * *
10097225 TATAGAGATGCCAAATCTG-CTGTCTTCGATCTGCTCTCTGACAATACAGAGTTTCCAAATCATC
65 TACAGAGATGCCAAATCTGTC-ATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCATC
*
10097289 TTAGATTTCCTTCAATGTAAACACATGAAAGCCAAATCAGCTATGTC
129 TTAGATTTCCTTCAACGTAAACACATGAAAGCCAAATCAGCTATGTC
* ** * *
10097336 TTCGATCTGCTCTCC-GTCGAATATGGAGATGCCAAATCTGTTTCTTTGATTTGTTCTCTGACAG
1 TTCGATCTACTC-CCTGTCGAATACAGAGATGCCAAATCTGTATCTTTGATTTGTTCTCTGACAA
10097400 TACAGAGATGCCAAATC
65 TACAGAGATGCCAAATC
10097417 ATCTTAGATC
Statistics
Matches: 226, Mismatches: 27, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
175 53 0.23
176 170 0.75
177 3 0.01
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (175 bp):
TTCGATCTACTCCCTGTCGAATACAGAGATGCCAAATCTGTATCTTTGATTTGTTCTCTGACAAT
ACAGAGATGCCAAATCTGTCATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCATCTT
AGATTTCCTTCAACGTAAACACATGAAAGCCAAATCAGCTATGTC
Found at i:10097404 original size:131 final size:132
Alignment explanation
Indices: 10097223--10097478 Score: 379
Period size: 131 Copynumber: 1.9 Consensus size: 132
10097213 GTTCTCTGAC
* *
10097223 AATATAGAGATGCCAAATCTGCTGTCTTCGATCTGCTCTCTGACAATACAGAGTTTCCAAATCAT
1 AATATAGAGATGCCAAATCTGCTGTCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCAT
* *
10097288 CTTAGATTTCCTTCAATGTAAACACATGAAAGCCAAATCAGCTATGTCTTCGATCTGCTCTCCGT
66 CTTAGATCTCCTTCAACGTAAACACATGAAAGCCAAATCAGCTATGTCTTCGATCTGCTCTCCGT
10097353 CG
131 CG
* * * * * *
10097355 AATATGGAGATGCCAAATCTG-TTTCTTTGATTTGTTCTCTGACAGTACAGAGATGCCAAATCAT
1 AATATAGAGATGCCAAATCTGCTGTCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCAT
* * * *
10097419 CTTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAATCTGCTATGTCTTCGATCTGCTC
66 CTTAGATCTCCTTCAACGTAAACACATGAAAGCCAAATCAGCTATGTCTTCGATCTGCTC
10097479 CTTGTAAACG
Statistics
Matches: 110, Mismatches: 14, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
131 90 0.82
132 20 0.18
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (132 bp):
AATATAGAGATGCCAAATCTGCTGTCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCAT
CTTAGATCTCCTTCAACGTAAACACATGAAAGCCAAATCAGCTATGTCTTCGATCTGCTCTCCGT
CG
Found at i:10098634 original size:23 final size:21
Alignment explanation
Indices: 10098608--10098680 Score: 94
Period size: 21 Copynumber: 3.4 Consensus size: 21
10098598 CCTCTCCATT
10098608 TTTTATTTTTTATTTTTTCTCTC
1 TTTT-TTTTTTATTTTTT-TCTC
*
10098631 TTTTCTTTTTATTTTTTTCTC
1 TTTTTTTTTTATTTTTTTCTC
* *
10098652 TTTTTCTTTTCTTTTTTTC-C
1 TTTTTTTTTTATTTTTTTCTC
10098672 TTTTTTTTT
1 TTTTTTTTT
10098681 GAAATAGAAG
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
20 9 0.20
21 20 0.44
22 12 0.27
23 4 0.09
ACGTcount: A:0.04, C:0.14, G:0.00, T:0.82
Consensus pattern (21 bp):
TTTTTTTTTTATTTTTTTCTC
Found at i:10098642 original size:22 final size:23
Alignment explanation
Indices: 10098614--10098678 Score: 84
Period size: 22 Copynumber: 3.0 Consensus size: 23
10098604 CATTTTTTAT
10098614 TTTTTATTTTTTCTCTC-TTTTC
1 TTTTTATTTTTTCTCTCTTTTTC
10098636 TTTTTATTTTTT-TCTCTTTTTC
1 TTTTTATTTTTTCTCTCTTTTTC
*
10098658 TTTTCT-TTTTTTC-CTTTTTTT
1 TTTT-TATTTTTTCTCTCTTTTT
10098679 TTGAAATAGA
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
21 4 0.10
22 34 0.87
23 1 0.03
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (23 bp):
TTTTTATTTTTTCTCTCTTTTTC
Found at i:10104233 original size:23 final size:23
Alignment explanation
Indices: 10104125--10104244 Score: 70
Period size: 23 Copynumber: 5.2 Consensus size: 23
10104115 AATCTATCAA
* *
10104125 AATAATAATATAGATAATAATAT
1 AATAATAAAATAGAAAATAATAT
* *
10104148 ACTAAAATAAATA-ATAAAT-ATGAT
1 AATAATA-AAATAGA-AAATAAT-AT
* * *
10104172 -GTAATAATAATATAAAATAACAT
1 AATAATAA-AATAGAAAATAATAT
* *
10104195 -ATATTAAAGT-GTAAAATAATAT
1 AATAATAAAATAG-AAAATAATAT
*
10104217 AATAATAAAATAGAAAATAGTAT
1 AATAATAAAATAGAAAATAATAT
10104240 AATAA
1 AATAA
10104245 ATATTATGTA
Statistics
Matches: 73, Mismatches: 15, Indels: 18
0.69 0.14 0.17
Matches are distributed among these distances:
22 12 0.16
23 49 0.67
24 12 0.16
ACGTcount: A:0.62, C:0.02, G:0.06, T:0.31
Consensus pattern (23 bp):
AATAATAAAATAGAAAATAATAT
Found at i:10104264 original size:24 final size:25
Alignment explanation
Indices: 10104232--10104297 Score: 66
Period size: 24 Copynumber: 2.6 Consensus size: 25
10104222 TAAAATAGAA
* *
10104232 AATAGTATAATAAATATTATGT-AAT
1 AATAATATAATAAATA-TAGGTAAAT
10104257 AA-AATATAATATAGATATAGGTAAAT
1 AATAATATAATA-A-ATATAGGTAAAT
10104283 AATAATAT-ATAAATA
1 AATAATATAATAAATA
10104298 AAGTTTTTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
24 11 0.31
25 8 0.23
26 11 0.31
27 5 0.14
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.35
Consensus pattern (25 bp):
AATAATATAATAAATATAGGTAAAT
Found at i:10106351 original size:12 final size:12
Alignment explanation
Indices: 10106329--10106362 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
10106319 AATTTTGAAA
10106329 ATATA-AATAAT
1 ATATATAATAAT
10106340 ATATATAATAAT
1 ATATATAATAAT
10106352 ATATATAATAA
1 ATATATAATAA
10106363 ATTAAAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 5 0.23
12 17 0.77
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (12 bp):
ATATATAATAAT
Found at i:10123521 original size:19 final size:21
Alignment explanation
Indices: 10123481--10123530 Score: 61
Period size: 20 Copynumber: 2.4 Consensus size: 21
10123471 AAAATTGTAG
10123481 ATATTTTTATTATATTTATAT
1 ATATTTTTATTATATTTATAT
10123502 ATATTTTT-TGTA-ATTT-TAT
1 ATATTTTTAT-TATATTTATAT
10123521 ATAATTTTTA
1 AT-ATTTTTA
10123531 ATTTTCTGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
19 5 0.19
20 11 0.42
21 10 0.38
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (21 bp):
ATATTTTTATTATATTTATAT
Found at i:10123688 original size:18 final size:18
Alignment explanation
Indices: 10123667--10123726 Score: 66
Period size: 19 Copynumber: 3.2 Consensus size: 18
10123657 ATATTTTTTC
10123667 AATTTTTATAATGTATAT
1 AATTTTTATAATGTATAT
* *
10123685 AATTTTTTAGTCATTTATTAT
1 AA-TTTTTA-TAATGTA-TAT
*
10123706 ACTTTTTATAATGTATAT
1 AATTTTTATAATGTATAT
10123724 AAT
1 AAT
10123727 ATATTTTTAA
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
18 7 0.21
19 11 0.33
20 11 0.33
21 4 0.12
ACGTcount: A:0.35, C:0.03, G:0.05, T:0.57
Consensus pattern (18 bp):
AATTTTTATAATGTATAT
Found at i:10123835 original size:18 final size:18
Alignment explanation
Indices: 10123814--10123859 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
10123804 ATTTTTCATT
*
10123814 TTTTTTGTAATTCATATA
1 TTTTTTATAATTCATATA
*
10123832 TTTTTTATAATTTATATA
1 TTTTTTATAATTCATATA
*
10123850 TTATTTATAA
1 TTTTTTATAA
10123860 ATTATTGCAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (18 bp):
TTTTTTATAATTCATATA
Found at i:10123864 original size:18 final size:18
Alignment explanation
Indices: 10123822--10123864 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
10123812 TTTTTTTTGT
*
10123822 AATTCATATATTTTTTATA
1 AATT-ATATATTATTTATA
*
10123841 ATTTATATATTATTTATA
1 AATTATATATTATTTATA
10123859 AATTAT
1 AATTAT
10123865 TGCAGTTTTC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 18 0.86
19 3 0.14
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (18 bp):
AATTATATATTATTTATA
Found at i:10123911 original size:9 final size:9
Alignment explanation
Indices: 10123880--10123930 Score: 50
Period size: 9 Copynumber: 5.6 Consensus size: 9
10123870 TTTTCTATAT
10123880 TTTTATAATA
1 TTTT-TAATA
*
10123890 ATTTTAATA
1 TTTTTAATA
10123899 TTTTTAAT-
1 TTTTTAATA
*
10123907 TTTTTATAAA
1 TTTTTA-ATA
*
10123917 TTTTAAATA
1 TTTTTAATA
10123926 TTTTT
1 TTTTT
10123931 TAAATATTCA
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
8 6 0.18
9 19 0.58
10 8 0.24
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (9 bp):
TTTTTAATA
Found at i:10123919 original size:18 final size:18
Alignment explanation
Indices: 10123891--10123935 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 18
10123881 TTTATAATAA
*
10123891 TTTTAATATTTTTAAT-TT
1 TTTTAA-ATTTTAAATATT
10123909 TTTATAAATTTTAAATATT
1 TTT-TAAATTTTAAATATT
10123928 TTTTAAAT
1 TTTTAAAT
10123936 ATTCATAATC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 16 0.67
19 8 0.33
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (18 bp):
TTTTAAATTTTAAATATT
Found at i:10124046 original size:14 final size:14
Alignment explanation
Indices: 10124006--10124049 Score: 52
Period size: 15 Copynumber: 3.0 Consensus size: 14
10123996 TTTATATAAA
10124006 TTTTTCATTTATAAT
1 TTTTTCATTT-TAAT
* *
10124021 TTTTGCACTTTTATT
1 TTTTTCA-TTTTAAT
10124036 TTTTTCATTTTAAT
1 TTTTTCATTTTAAT
10124050 ATATATTTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
14 6 0.25
15 15 0.62
16 3 0.12
ACGTcount: A:0.20, C:0.09, G:0.02, T:0.68
Consensus pattern (14 bp):
TTTTTCATTTTAAT
Found at i:10124075 original size:18 final size:18
Alignment explanation
Indices: 10124054--10124088 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
10124044 TTTAATATAT
10124054 ATTTTATATAATTTTATG
1 ATTTTATATAATTTTATG
* *
10124072 ATTTTCTATATTTTTAT
1 ATTTTATATAATTTTAT
10124089 AATAATTTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.66
Consensus pattern (18 bp):
ATTTTATATAATTTTATG
Found at i:10124081 original size:29 final size:30
Alignment explanation
Indices: 10124049--10124106 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
10124039 TTCATTTTAA
10124049 TATATATTTTAT-ATAA-TTTTATGATTTTC
1 TATAT-TTTTATAATAATTTTTATGATTTTC
10124078 TATATTTTTATAATAATTTTTATGATTTT
1 TATATTTTTATAATAATTTTTATGATTTT
10124107 TTAATTATCT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
28 6 0.22
29 9 0.33
30 12 0.44
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.64
Consensus pattern (30 bp):
TATATTTTTATAATAATTTTTATGATTTTC
Found at i:10124111 original size:20 final size:21
Alignment explanation
Indices: 10124072--10124111 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
10124062 TAATTTTATG
10124072 ATTTTCTATATTTTTATAATA
1 ATTTTCTATATTTTTATAATA
10124093 ATTTT-TATGATTTTT-TAAT
1 ATTTTCTAT-ATTTTTATAAT
10124112 TATCTTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.65
Consensus pattern (21 bp):
ATTTTCTATATTTTTATAATA
Found at i:10132179 original size:16 final size:17
Alignment explanation
Indices: 10132138--10132173 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
10132128 AAAATTAAGT
*
10132138 TTAGACCCATTTTTGGC
1 TTAGACCCATTTTTAGC
10132155 TTAGACCCATTTTTAGC
1 TTAGACCCATTTTTAGC
10132172 TT
1 TT
10132174 GGCCCACTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.19, C:0.22, G:0.14, T:0.44
Consensus pattern (17 bp):
TTAGACCCATTTTTAGC
Found at i:10140618 original size:18 final size:17
Alignment explanation
Indices: 10140577--10140619 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
10140567 ATATTAGGAT
*
10140577 AAAATAATAAGTATAATG
1 AAAAT-ATAAGGATAATG
10140595 ATAAATATAAGGATATATG
1 A-AAATATAAGGATA-ATG
10140614 AAAATA
1 AAAATA
10140620 ATACTATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 14 0.64
19 8 0.36
ACGTcount: A:0.60, C:0.00, G:0.12, T:0.28
Consensus pattern (17 bp):
AAAATATAAGGATAATG
Found at i:10143383 original size:87 final size:87
Alignment explanation
Indices: 10143008--10143412 Score: 406
Period size: 88 Copynumber: 4.6 Consensus size: 87
10142998 GTGATCCTGA
** * * * * *
10143008 GCTCAACTCATTTCTCGCAATATGAATTGACTTTTAAAAACTAGACATT-AAAAACAGAAATTGA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAC-AGAAATTGAAAAACAAAAATTG-
* ** * **
10143072 AAAATAGCTCAGCACATGAGCAAAG
64 AAAATACCTCAGC-TGTGACCCGAG
* * ** * **
10143097 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAACAGAATTTGCCAAACAGATTTTGAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAAACAAAAATTGAA
*
10143162 AATACCTCGGCATGTGACCCGAG
66 AATACCTCAGC-TGTGACCCGAG
* * * **
10143185 GCTCAACTCACCTCTCGTAATATGAGTTGATTCTTGAAAAGCATAAATTGAAAAAACATTAATTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA-CAGAAATTG-AAAAACAAAAATTG
10143250 AAAATACCTCAGC-GTG-CCTCGAG
64 AAAATACCTCAGCTGTGACC-CGAG
* *
10143273 GCTCAACTCACCTCTCACAATATGAGTTGA-TTTTGACGAACAGAAATTGAAAAACAAAAATTG-
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-AAACAGAAATTGAAAAACAAAAATTGA
* *
10143336 AAAGACCTCAGCGTGTGAGCCGAG
65 AAATACCTCAGC-TGTGACCCGAG
*
10143360 GCTCAACTCACCTCTCGCGATATGAGTTGATTTTTGACAAACAGAAATTGAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-AAACAGAAATTGAAA
10143413 TTACCTCAGC
Statistics
Matches: 266, Mismatches: 41, Indels: 19
0.82 0.13 0.06
Matches are distributed among these distances:
85 11 0.04
86 12 0.05
87 50 0.19
88 119 0.45
89 54 0.20
90 20 0.08
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (87 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAAACAAAAATTGAA
AATACCTCAGCTGTGACCCGAG
Found at i:10143443 original size:73 final size:72
Alignment explanation
Indices: 10143319--10143467 Score: 219
Period size: 73 Copynumber: 2.0 Consensus size: 72
10143309 CGAACAGAAA
*
10143319 TTGAAAAACAAAAATTGAAAGACCTCAGCGTGTGAGCCGAGGCTCAACTCACCTCTCGCGATATG
1 TTGAAAAACAAAAATTGAAAGACCTCAGCGTGT--GCCGAGGCTCAACTCACCTCTCGCAATATG
10143384 AGTTGATTT
64 AGTTGATTT
* * *
10143393 TTGACAAACAGAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAAAAATTGAAA-GACCTCAGCGTGTGCC-GAGGCTCAACTCACCTCTCGCAATATG
10143457 AGTTGATTT
64 AGTTGATTT
10143466 TT
1 TT
10143468 TGAAGAGCAG
Statistics
Matches: 69, Mismatches: 4, Indels: 5
0.88 0.05 0.06
Matches are distributed among these distances:
72 2 0.03
73 37 0.54
74 18 0.26
75 12 0.17
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (72 bp):
TTGAAAAACAAAAATTGAAAGACCTCAGCGTGTGCCGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTT
Found at i:10143616 original size:75 final size:74
Alignment explanation
Indices: 10143492--10143722 Score: 340
Period size: 75 Copynumber: 3.1 Consensus size: 74
10143482 TGGAAAGCAG
10143492 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTT
10143557 TGACAAACAT
66 TGA-AAACAT
* * * *
10143567 AAATTGAAATTACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTT
*
10143632 TGAAAAGCAG
66 TGAAAA-CAT
* * *
10143642 AATTTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTTGCAATATGAGCTGA--TTTT
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTT
*
10143705 TGAAAAAGAT
66 TG-AAAACAT
10143715 AAATTGAA
1 AAATTGAA
10143723 GAAAACAGAA
Statistics
Matches: 140, Mismatches: 14, Indels: 6
0.88 0.09 0.04
Matches are distributed among these distances:
73 14 0.10
74 7 0.05
75 119 0.85
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (74 bp):
AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTT
TGAAAACAT
Found at i:10143763 original size:164 final size:161
Alignment explanation
Indices: 10143556--10145151 Score: 1416
Period size: 164 Copynumber: 10.0 Consensus size: 161
10143546 GTTGATTTTT
* * *
10143556 TTGACAAACATAAATTGAAATTACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* *
10143621 GTTGATTTTTTTGAAAAGCAGAATTTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCT
66 GTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCT
* *
10143686 TGCAATATGAGCTGATTTTTGAAAAAGATAAA
131 CGCAATATGAGTTGATTTTTGAAAAA-ATAAA
*
10143718 TTGAAGAAAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTG-A-AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
* * * *
10143783 GAGTTGATTTTTGAAAAACAGATATTAAAAATAGAAATTGAAAAGACCTCAGCATGTGAGCC-GA
64 GAGTTGATTTTT----------T-TGAAAAACAGAAATTGAAAATACCTCAGC--GTG-CCCTGA
* *
10143847 GGCTCAACTCATCTCTCGCGATATGAGTTGA---TT-------T---
115 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAATAAA
*
10143881 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* *
10143946 GTTGATTTTTTTGAAGAGCAGAAATTGGAAAGAAGAAATCGAAAATACCTCAGCGTGCCCTGAGG
66 GTTGATTTTTTT--------G-AA----AAA-CAGAAATTGAAAATACCTCAGCGTGCCCTGAGG
*
10144011 CTCAACTCACCTCTAGCAATATGAGTTGA-TTTT-------T---
117 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAATAAA
* *
10144045 TTGACAAACATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* * *
10144110 GTTGATTTTTTTGAAAAGCAGAAATTAAAAATACCTCAGCGTGCCTTGAGGCTCAACTCACCTCT
66 GTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCT
*
10144175 CGCAATATGAGCTGATTTTTGAAAAACATAAA
131 CGCAATATGAGTTGATTTTTGAAAAA-ATAAA
* *
10144207 TTGAAGAAAACAGAAATTGAAATTACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCGCAATAT
1 TTG-A-AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
* * * * *
10144272 GAGTTGA--TTTTTGAAAAACAGAAATTAAAAATACGTCATCGTGACCTGAGGTTCAACTCACCT
64 GAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCT
* * *
10144335 CTCGCAATATGAGCTGATTTTTTTGAAACACAGAAA
129 CTCGCAATATGAGTTGA--TTTTTGAAA-AAATAAA
* *
10144371 TT--AAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* ** * * *
10144434 GTTGATTTTTTTG----A-TG--A-T-AAAATACCTCAATGTGACTTGAGGCCCAACTCACCTCT
66 GTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCT
*
10144490 CGCAATATGAGTTGATTTTTG-AAACATAAA
131 CGCAATATGAGTTGATTTTTGAAAAAATAAA
* * * *
10144520 TT-AAAACACAAAAATTGACAA-TACCTCAGTGTGCCCCGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAA-ACAGAAATTGA-AATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
* * * *
10144583 GAGTTGA-TTTTTTGAAAAATAGAAATTGAAAATACCTTAGCGTGTCCTGAAGCTCAACTCACCT
64 GAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCT
10144647 CTCGCAATATGAGTTGATTTTTGAAAAAAACATAAA
129 CTCGCAATATGAGTTGATTTTTG--AAAAA-ATAAA
* * * * *
10144683 TTG---AGCAGAAATTGAAAATACCTCAACAG-GTCTTGAGGCTCAACTCACCTCTCGTAATATG
1 TTGAAAAACAGAAATTGAAATTACCTCAGC-GTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
** * ** * * *
10144744 AGTTGA-TTTTTTG---ATGATAAATTGAAAATACCTCAATGTGACTTGAGGTTCAACTCACCTC
65 AGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTC
10144805 TCGCAATATGAGTTGA-TTTT-------T---
130 TCGCAATATGAGTTGATTTTTGAAAAAATAAA
* *
10144826 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATAA
1 TTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* * * * * *
10144891 GTTGATTTTTGAAACATAAATTAAAACACAAAAATTGACAATACCTCAGCGCGCCCCGAAGCTCA
66 GTTGATTTTT------T---TGAAAA-ACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCA
* * *
10144956 ACTCACCTCT--CAATATGAATTAATTTTTTTAAAAAATAGAAA
121 ACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAAAT--AAA
* * * * *
10144998 TT--AAAACAGAAATTAAAAATACCTCAGCGTGTGAGCC-AAGACTCAACTCACCTCTTGCAATA
1 TTGAAAAACAGAAATTGAAATTACCTCAGCGTGT---CCTGAGGCTCAACTCACCTCTCGCAATA
* * * **
10145060 TGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTTATT
63 TGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACC
* *
10145125 TCTCGTAATATGAGTTGAATTTTGAAA
128 TCTCGCAATATGAGTTGATTTTTGAAA
10145152 CAGAAATAAA
Statistics
Matches: 1198, Mismatches: 128, Indels: 215
0.78 0.08 0.14
Matches are distributed among these distances:
143 3 0.00
145 1 0.00
146 58 0.05
147 4 0.00
149 8 0.01
150 69 0.06
151 70 0.06
152 2 0.00
153 47 0.04
154 2 0.00
155 4 0.00
156 6 0.01
157 56 0.05
158 13 0.01
159 58 0.05
160 159 0.13
161 73 0.06
162 154 0.13
163 27 0.02
164 252 0.21
165 1 0.00
166 2 0.00
167 1 0.00
170 29 0.02
172 36 0.03
173 2 0.00
174 3 0.00
175 24 0.02
177 32 0.03
178 2 0.00
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (161 bp):
TTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCT
CGCAATATGAGTTGATTTTTGAAAAAATAAA
Found at i:10143791 original size:89 final size:89
Alignment explanation
Indices: 10143633--10143899 Score: 344
Period size: 89 Copynumber: 3.0 Consensus size: 89
10143623 TGATTTTTTT
* * * * *
10143633 GAAAAGCAGAATTTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTTGCAATATGAGC
1 GAAAA-CAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* *
10143698 TGATTTTTGAAAAAGATAAATTGAA
65 TGATTTTTGAAAAACAGAAATTGAA
*
10143723 GAAAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 GAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
10143788 GATTTTTGAAAAACAGATATT--A
66 GATTTTTGAAAAACAGAAATTGAA
* * * *
10143810 -AAAATAGAAATTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCATCTCTCGCGATATGA
1 GAAAACAGAAATTGAAAATACCTCAGCATGT---CCTGAGGCTCAACTCACCTCTCGCAATATGA
*
10143873 GTTGATTTTTGACAAACAGAAATTGAA
63 GTTGATTTTTGAAAAACAGAAATTGAA
10143900 ATTACCTCAG
Statistics
Matches: 156, Mismatches: 16, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
86 27 0.17
87 1 0.01
88 48 0.31
89 74 0.47
90 6 0.04
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (89 bp):
GAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAAAACAGAAATTGAA
Found at i:10143959 original size:75 final size:75
Alignment explanation
Indices: 10143809--10144211 Score: 275
Period size: 75 Copynumber: 5.2 Consensus size: 75
10143799 AACAGATATT
* * * * *
10143809 AAAAATAGAAATTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCATCTCTCGCGATATGA
1 AAAAACAGAAATTGAAAATACCTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGA
10143873 GTTGA--TTTTTG
63 GTTGATTTTTTTG
* *
10143884 ACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
10143949 GATTTTTTTG
66 GATTTTTTTG
* * * ** *** * * * * * *
10143959 AAGAGCAGAAATTGGAAAGAAGAAATCGAAAAT-ACCTCAGCGTGCCCTGAGGCTCAACTCAC-C
1 AAAAACAGAAATT-G-AA-AATACCTC-AGCGTGTCCT--GAG-G--CTCA-ACTCACCTCTCGC
** *
10144022 TCTA-GCAATATGAGTTGATTTTTTTG
56 AATATG-AGT-TGA--T--TTTT-TTG
* * *
10144048 ACAAACATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
10144113 GATTTTTTTG
66 GATTTTTTTG
* * *
10144123 AAAAGCAGAAATTAAAAATACCTCAGCGTG-CCTTGAGGCTCAACTCACCTCTCGCAATATGAGC
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTCC-TGAGGCTCAACTCACCTCTCGCAATATGAGT
10144187 TGA--TTTTTG
65 TGATTTTTTTG
*
10144196 AAAAACATAAATTGAA
1 AAAAACAGAAATTGAA
10144212 GAAAACAGAA
Statistics
Matches: 249, Mismatches: 55, Indels: 50
0.70 0.16 0.14
Matches are distributed among these distances:
72 2 0.01
73 53 0.21
74 2 0.01
75 100 0.40
76 5 0.02
77 2 0.01
78 8 0.03
79 2 0.01
80 13 0.05
81 9 0.04
82 2 0.01
83 9 0.04
84 13 0.05
85 2 0.01
86 8 0.03
87 2 0.01
88 5 0.02
89 12 0.05
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (75 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTTTG
Found at i:10144060 original size:89 final size:89
Alignment explanation
Indices: 10143890--10144061 Score: 274
Period size: 89 Copynumber: 1.9 Consensus size: 89
10143880 TTTGACAAAC
* * * *
10143890 AGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AGAAATCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
*
10143955 TTTGAAGAGCAGAAATTGGAAAGA
66 TTTGAAGAACAGAAATTGGAAAGA
10143979 AGAAATCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
1 AGAAATCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
*
10144044 TTTGACA-AACATAAATTG
66 TTTGA-AGAACAGAAATTG
10144062 AAATTACCTC
Statistics
Matches: 76, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
89 75 0.99
90 1 0.01
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (89 bp):
AGAAATCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
TTTGAAGAACAGAAATTGGAAAGA
Found at i:10144062 original size:325 final size:321
Alignment explanation
Indices: 10143245--10144999 Score: 1178
Period size: 325 Copynumber: 5.5 Consensus size: 321
10143235 AAAAAACATT
* *
10143245 AATTGAAAATACCTCAGCGTG-CCTCGAGGCTCAACTCACCTCTCACAATATGAGTTGA---TTT
1 AATTGAAATTACCTCAGCGTGTCCT-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
* * * *
10143306 TGACGAACAGAAATTGAAAAACAAAAATTG-AAAGACCTCAGCGTGTGAGCC-GAGGCTCAACTC
65 TGAAGAGCAGAAATTG--AAA-AAAAA-TGAAAATACCTCAGC--GTG-CCCTGAGGCTCAACTC
* *
10143369 ACCTCTCGCGATATGAGTTGA--TTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGA
123 ACCTCTAGCAATATGAGTTGATTTTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGA
* * **
10143432 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAGAGCAGAAATTGGAAAGCAGAAATT
188 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAGCAGAAATT-AAAAATAGAAATT
*
10143497 GAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTTTGACA
252 GAAAAGACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGA-TTTTTTGACA
*
10143562 AACATA
316 AACAGA
*
10143568 AATTGAAATTACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
1 AATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
* *
10143633 GAAAAGCAG-AATT---------TGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTTG
66 GAAGAGCAGAAATTGAAAAAAAATGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTAG
* * *
10143688 CAATATGAGCTGATTTTTGAAAAAGATAAATTGAAGAAAACAGAAATTGAAATTACCTCAGCATG
131 CAATATGAGTTGA-TTTT--------T---TTG-A-CAAACAGAAATTGAAATTACCTCAGCGTG
* *
10143753 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGATATTAAAAATAG
182 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAGCAGAAATTAAAAATAG
* * * *
10143817 AAATTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCATCTCTCGCGATATGAGTTGA-TT
247 AAATTGAAAAGACCTCAGC--GTG-CCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTT
10143880 TTTGACAAACAGA
309 TTTGACAAACAGA
10143893 AATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
1 AATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
10143958 GAAGAGCAGAAATTGGAAAGAAGAAATCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCT
66 GAAGAGCAGAAATT-GAAA-AA-AAAT-GAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCT
*
10144023 CTAGCAATATGAGTTGATTTTTTTGACAAACATAAATTGAAATTACCTCAGCGTGTCCTGAGGCT
127 CTAGCAATATGAGTTGATTTTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCT
10144088 CAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATT----A-A-AAA-T----
192 CAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAGCAGAAATTAAAAATAGAAATTGAAA
* * *
10144142 --ACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAAAACATA
256 AGACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGA--TTT--------T-
*
10144205 AATTGAAGAAAACAGA
310 --TTG-A-CAAACAGA
* *
10144221 AATTGAAATTACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTT
1 AATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
* * * * * * *
10144284 GAAAAACAGAAATT--------A--AAAATACGTCATCGTGACCTGAGGTTCAACTCACCTCTCG
66 GAAGAGCAGAAATTGAAAAAAAATGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTAG
* * *
10144339 CAATATGAGCTGATTTTTTTGAAACACAGAAATTAAAACAGAAATTGAAAATACCTCAGCGTGCC
131 CAATATGAGTTGATTTTTTTG----AC--------AAACAGAAATTGAAATTACCTCAGCGTGTC
*
10144404 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT------------TT---GAT-G--
184 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAGCAGAAATTAAAAATAGAA
* ** * * * *
10144450 A-T-AAAATACCTCAATGTGACTTGAGGCCCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGA
249 ATTGAAAAGACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTTG-
*
10144512 AACATAAATTAAAACACAAA
313 -AC---------AA-ACAGA
* * *
10144532 AATTGACAA-TACCTCAGTGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
1 AATTGA-AATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
* * * * * *
10144595 T---GA--A-AAA-T---AGAAATTGAAAATACCTTAGCGTGTCCTGAAGCTCAACTCACCTCTC
65 TGAAGAGCAGAAATTGAAAAAAAATGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTA
*** * *
10144650 GCAATATGAGTTGATTTTTGAAAAAAACATAAATTGAGCAGAAATTGAAAATACCTCAACAG-GT
130 GCAATATGAGTTGATTTTT----TTGAC---AA---A-CAGAAATTGAAATTACCTCAGC-GTGT
* * *
10144714 CTTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTT--------G--A-T---GAT--A
183 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAGCAGAAATTAAAAATAGA
* ** * * * *
10144763 AATTGAAAATACCTCAATGTGACTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
248 AATTGAAAAGACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGA-TTTTTT
*
10144828 GAAAAACAGA
312 GACAAACAGA
* *
10144838 AATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGA--TTTTT
1 AATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
* * * * * *
10144901 GAA-A-CATAAATTAAAACACAAAAATTGACAATACCTCAGCGCGCCCCGAAGCTCAACTCACCT
66 GAAGAGCAGAAATT-GAA-A-AAAAA-TGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCT
* * * * *
10144964 CT--CAATATGAATTAATTTTTTTAAAAAATAGAAATT
127 CTAGCAATATGAGTTGATTTTTTTGACAAACAGAAATT
10145000 AAAACAGAAA
Statistics
Matches: 1199, Mismatches: 103, Indels: 279
0.76 0.07 0.18
Matches are distributed among these distances:
301 3 0.00
302 2 0.00
304 8 0.01
305 9 0.01
306 58 0.05
307 8 0.01
308 3 0.00
309 4 0.00
310 10 0.01
311 147 0.12
312 158 0.13
313 15 0.01
314 11 0.01
315 64 0.05
316 57 0.05
317 35 0.03
318 6 0.01
320 1 0.00
321 3 0.00
322 7 0.01
323 53 0.04
324 65 0.05
325 179 0.15
326 52 0.04
327 118 0.10
328 65 0.05
330 1 0.00
338 5 0.00
339 52 0.04
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (321 bp):
AATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
GAAGAGCAGAAATTGAAAAAAAATGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTAG
CAATATGAGTTGATTTTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAAC
TCACCTCTCGCAATATGAGTTGATTTTTTGAAAAGCAGAAATTAAAAATAGAAATTGAAAAGACC
TCAGCGTGCCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTTGACAAACAGA
Found at i:10144105 original size:489 final size:481
Alignment explanation
Indices: 10143148--10145151 Score: 2141
Period size: 489 Copynumber: 4.2 Consensus size: 481
10143138 AGAATTTGCC
** * * *
10143148 AAACAGATTTTGAAAATACCTCGGCATGTGACCC-GAGGCTCAACTCACCTCTCGTAATATGAGT
1 AAACAGAAATTGAAAATACCTCAGC--GTG-CCCTGAGGCTCAACTCACCTCTCGCAATATGAGC
* * ** *
10143212 TGATTCTTGAAAAGCATAAATTGAA-AAAACATTAATTGAAAATACCTCAGCGTG-CCTCGAGGC
63 TGATTTTTGAAAAACATAAATTGAAGAAAACAGAAATTGAAAATACCTCAGCATGTCCT-GAGGC
* ** *
10143275 TCAACTCACCTCTCACAATATGAGTTGA-TTTTGACGAACAGAAATTGAAAAACAAAAATTGAAA
127 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT----AA-TAAAATTGAAA
* *
10143339 GACCTCAGCGTGTGAGCCGAGGCTCAACTCACCTCTCGCGATATGAGTTGA-TTTTTGACAAACA
187 GACCTCAGCATGTGA-CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGACAAACA
*
10143403 GAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
251 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
*
10143468 TGAAGAGCAGAAATTGGAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACC
316 TGAA-A-CAGAAATT-GAAAGAAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACC
* *
10143533 TCTAGCAATATGAGTTGATTTTTT-TGACAAACATAAATTGAAATTACCTTAGCGTGTCCTGAGG
378 TCTAGCAATATGAGTTGATTTTTTATGAAAAACATAAATTGAAATTACCTCAGCGTGTCCTGAGG
10143597 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
443 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
* * *
10143636 AAGCAGAATTTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTTGCAATATGAGCTGA
1 AAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA
* *
10143701 TTTTTGAAAAAGATAAATTGAAGAAAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAA
66 TTTTTGAAAAACATAAATTGAAGAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAA
*
10143766 CTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGATATTAAAAATAGAAATTGAAAAGACC
131 CTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT---AATA-AAATTG-AAAGACC
* *
10143831 TCAGCATGTGAGCCGAGGCTCAACTCATCTCTCGCGATATGAGTTGA-TTTTTGACAAACAGAAA
191 TCAGCATGTGA-CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGACAAACAGAAA
*
10143895 TTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA
255 TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGA
*
10143960 AGAGCAGAAATTGGAAAGAAGAAATCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCT
319 A-A-CAGAAATT-GAAAGAAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCT
*
10144025 AGCAATATGAGTTGATTTTTT-TGACAAACATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTC
381 AGCAATATGAGTTGATTTTTTATGAAAAACATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTC
10144089 AACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
446 AACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
* * *
10144125 AAGCAGAAATTAAAAATACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA
1 AAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA
* *
10144190 TTTTTGAAAAACATAAATTGAAGAAAACAGAAATTGAAATTACCTCAGCATGTCTTGAGGCTCAA
66 TTTTTGAAAAACATAAATTGAAGAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAA
* *
10144255 CTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT-A-AAAA-T-----ACGTCATC
131 CTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAATAAAATTGAAAGACCTCAGC
* *
10144312 --GTGACCTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAACACAGAAATTAA
196 ATGTGACC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG----AC--------A
*
10144375 AACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
247 AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* ** * * *
10144439 TTTTT----------TT----GATG--A-T-AAAATACCTCAATGTGACTTGAGGCCCAACTCAC
312 TTTTTGAAACAGAAATTGAAAGAAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCAC
* * * *
10144486 CTCTCGCAATATGAGTTGATTTTTGAAACATAAATTAAAACACAAAAATTGACAA-TACCTCAGT
377 CTCTAGCAATATGAGTTGATTTTT------T--ATGAAAA-ACATAAATTGA-AATTACCTCAGC
* *
10144550 GTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAA
432 GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
* * * * *
10144599 AAATAGAAATTGAAAATACCTTAGCGTGTCCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA
* * *
10144664 TTTTTGAAAAAAACATAAATTG-AG----CAGAAATTGAAAATACCTCAACAGGTCTTGAGGCTC
66 TTTTTG--AAAAACATAAATTGAAGAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTC
* * * *
10144724 AACTCACCTCTCGTAATATGAGTTGATTTTT-------TG--A-TGAT-AAATTGAAAATACCTC
129 AACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAATAAAATTG-AAAGACCTC
* * *
10144778 A--ATGTGACTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAAT
193 AGCATGTGAC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGACAAACAGAAAT
*
10144841 TGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGA-TTTTTGAAA
256 TGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAA
* * * * * * * *
10144905 CATAAATTAAAACACAAAAATTGACAATACCTCAGCGCGCCCCGAAGCTCAACTCACCTCT--CA
321 CAGAAATTGAAAGA-AGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTAGCA
* * * * *
10144968 ATATGAATTAATTTTTTTAAAAAATAGAAATTAAAACAGAAATTAAAAATACCTCAGCGTGTGAG
385 ATATGAGTTGA-TTTTTT-----AT-G--A--AAAACATAAATTGAAATTACCTCAGCGTGT---
* * *
10145033 CC-AAGACTCAACTCACCTCTTGCAATATGAGTTGATTTTTTTGAA
436 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
* * * ** * *
10145078 AAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTTATTTCTCGTAATATGAGTTGA
1 AAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA
*
10145143 ATTTTGAAA
66 TTTTTGAAA
10145152 CAGAAATAAA
Statistics
Matches: 1334, Mismatches: 102, Indels: 171
0.83 0.06 0.11
Matches are distributed among these distances:
457 68 0.05
461 1 0.00
462 5 0.00
463 1 0.00
464 1 0.00
465 53 0.04
467 3 0.00
469 54 0.04
471 65 0.05
472 4 0.00
473 2 0.00
474 123 0.09
475 67 0.05
476 77 0.06
477 6 0.00
478 30 0.02
479 73 0.05
480 2 0.00
482 1 0.00
483 3 0.00
484 1 0.00
485 4 0.00
486 58 0.04
487 68 0.05
488 228 0.17
489 336 0.25
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (481 bp):
AAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA
TTTTTGAAAAACATAAATTGAAGAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAA
CTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAATAAAATTGAAAGACCTCAGC
ATGTGACCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGACAAACAGAAATTGAAA
ATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAACAGAA
ATTGAAAGAAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTAGCAATATGA
GTTGATTTTTTATGAAAAACATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
TCGCAATATGAGTTGATTTTTTTGAA
Found at i:10144218 original size:16 final size:16
Alignment explanation
Indices: 10144197--10144227 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
10144187 TGATTTTTGA
*
10144197 AAAACATAAATTGAAG
1 AAAACAGAAATTGAAG
10144213 AAAACAGAAATTGAA
1 AAAACAGAAATTGAA
10144228 ATTACCTCAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.65, C:0.06, G:0.13, T:0.16
Consensus pattern (16 bp):
AAAACAGAAATTGAAG
Found at i:10144280 original size:89 final size:90
Alignment explanation
Indices: 10144122--10144297 Score: 291
Period size: 89 Copynumber: 2.0 Consensus size: 90
10144112 TGATTTTTTT
*
10144122 GAAAAGCAGAAATTAAAAATACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGC
1 GAAAAGCAGAAATTAAAAATACCTCAGCATGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGC
*
10144187 TGATTTTTGAAAAACATAAATTGAA
66 TGATTTTTGAAAAACAGAAATTGAA
* * * *
10144212 GAAAA-CAGAAATTGAAATTACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 GAAAAGCAGAAATTAAAAATACCTCAGCATGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGC
10144276 TGATTTTTGAAAAACAGAAATT
66 TGATTTTTGAAAAACAGAAATT
10144298 AAAAATACGT
Statistics
Matches: 80, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
89 75 0.94
90 5 0.06
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.26
Consensus pattern (90 bp):
GAAAAGCAGAAATTAAAAATACCTCAGCATGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGC
TGATTTTTGAAAAACAGAAATTGAA
Found at i:10144332 original size:73 final size:74
Alignment explanation
Indices: 10144213--10144916 Score: 327
Period size: 87 Copynumber: 9.2 Consensus size: 74
10144203 TAAATTGAAG
* * * * *
10144213 AAAACAGAAATTGAAATTACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTAAAAATACCTCAGCATGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
10144278 A-TTTTTGA
66 ATTTTTTGA
* * * *
10144286 AAAACAGAAATTAAAAATACGTCATCGTGACCTGAGGTTCAACTCACCTCTCGCAATATGAGCTG
1 AAAACAGAAATTAAAAATACCTCAGCATGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
10144351 ATTTTTTTGAAACACAGAAA
66 A-TTTTTT--------G--A
* * * *
10144371 TTAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 --AAAACAGAAATTAAAAATACCTCAGCATGACCTGAGGCTCAACTCACCTCTCGCAATATGAGC
10144436 TGATTTTTTTG-
64 TGA-TTTTTTGA
* *** * * *
10144447 ---A-TG--A-T-AAAATACCTCAATGTGACTTGAGGCCCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTAAAAATACCTCAGCATGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
10144504 A-TTTTTG-
66 ATTTTTTGA
* * ** * * * *
10144511 -AAACATAAATTAAAACACAAAAAT-TGACAAT-ACCTCAGTGTGCCCCGAGGCTCAACTCACCT
1 AAAACAGAAATT-AAA-A-ATACCTCAG-C-ATGACCT--GAG-G-CTC-A---AC---TCACCT
*
10144573 CTCGCAATATGAGTTGATTTTTTGA
50 CTCGCAATATGAGCTGATTTTTTGA
* * * * * * *
10144598 AAAATAGAAATTGAAAATACCTTAGCGTGTCCTGAAGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTAAAAATACCTCAGCATGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
10144663 A-TTTTTGAAAAAAACA
66 ATTTTTTG--------A
* * * * * *
10144679 TAAATTGAGCAGAAATTGAAAATACCTCAACAGGTCTTGAGGCTCAACTCACCTCTCGTAATATG
1 -AAA---A-CAGAAATTAAAAATACCTCAGCATGACCTGAGGCTCAACTCACCTCTCGCAATATG
*
10144744 AGTTGATTTTTTG-
61 AGCTGATTTTTTGA
** * * *** * * *
10144757 --ATGATAAATTGAAAATACCTCAATGTGACTTGAGGTTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTAAAAATACCTCAGCATGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
10144820 ATTTTTTTGA
66 A-TTTTTTGA
* * * * *
10144830 AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTG
1 AAAACAGAAATTAAAAATACCTCAGCATGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
10144895 A-TTTTTG-
66 ATTTTTTGA
*
10144902 -AAACATAAATTAAAA
1 AAAACAGAAATTAAAA
10144917 CACAAAAATT
Statistics
Matches: 497, Mismatches: 74, Indels: 122
0.72 0.11 0.18
Matches are distributed among these distances:
64 6 0.01
66 49 0.10
67 1 0.00
68 1 0.00
69 1 0.00
70 2 0.00
71 68 0.14
72 9 0.02
73 70 0.14
74 29 0.06
75 62 0.12
76 2 0.00
77 2 0.00
78 3 0.01
79 2 0.00
80 1 0.00
81 3 0.01
82 5 0.01
83 2 0.00
84 1 0.00
85 32 0.06
86 62 0.12
87 75 0.15
88 9 0.02
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (74 bp):
AAAACAGAAATTAAAAATACCTCAGCATGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
ATTTTTTGA
Found at i:10144381 original size:12 final size:13
Alignment explanation
Indices: 10144357--10144389 Score: 50
Period size: 12 Copynumber: 2.5 Consensus size: 13
10144347 GCTGATTTTT
10144357 TTGAAACACAGAAA
1 TTGAAA-ACAGAAA
10144371 TT-AAAACAGAAA
1 TTGAAAACAGAAA
10144383 TTGAAAA
1 TTGAAAA
10144390 TACCTCAGCG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 9 0.50
13 7 0.39
14 2 0.11
ACGTcount: A:0.61, C:0.09, G:0.12, T:0.18
Consensus pattern (13 bp):
TTGAAAACAGAAA
Found at i:10144438 original size:160 final size:161
Alignment explanation
Indices: 10144050--10145147 Score: 1082
Period size: 160 Copynumber: 6.9 Consensus size: 161
10144040 TTTTTTTGAC
* *
10144050 AAACATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* *
10144115 TTTTTTTGAAAAGCAGAAATTAAAAATACCTCAGCGTG-CCTTGAGGCTCAACTCACCTCTCGCA
66 -TTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGACC-TGAGGCTCAACTCACCTCTCGCA
* *
10144179 ATATGAGCTGA--TTTTTGAAAAACATAAATTGAAGA
129 ATATGAGTTGATTTTTTTGAAAAACAGAAATT----A
* * *
10144214 AAACAGAAATTGAAATTACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* * * *
10144279 -TTTTTGAAAAACAGAAATTAAAAATACGTCATCGTGACCTGAGGTTCAACTCACCTCTCGCAAT
66 TTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAAT
* *
10144343 ATGAGCTGATTTTTTTGAAACACAGAAATTA
131 ATGAGTTGATTTTTTTGAAAAACAGAAATTA
*
10144374 AAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* ** * *
10144439 TTTTTTTG----A-TG--A-T-AAAATACCTCAATGTGACTTGAGGCCCAACTCACCTCTCGCAA
66 -TTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAA
*
10144495 TATGAGTTGA--TTTTTG--AAACATAAATTAA
130 TATGAGTTGATTTTTTTGAAAAACAGAAATT-A
* * * * *
10144524 AACACAAAAATTGACAATACCTCAGTGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AA-ACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* * * *
10144589 ATTTTTTGAAAAATAGAAATTGAAAATACCTTAGCGTGTCCTGAAGCTCAACTCACCTCTCGCAA
65 ATTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAA
*** *
10144654 TATGAGTTGATTTTTGAAAAAAACATAAATT-
130 TATGAGTTGATTTTTTTGAAAAACAGAAATTA
* * * * *
10144685 GAGCAGAAATTGAAAATACCTCAACAG-GTCTTGAGGCTCAACTCACCTCTCGTAATATGAGTTG
1 AAACAGAAATTGAAAATACCTCAGC-GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
** * ** * *
10144749 ATTTTTTG---ATGATAAATTGAAAATACCTCAATGTGACTTGAGGTTCAACTCACCTCTCGCAA
65 ATTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAA
10144811 TATGAGTTGATTTTTTT--------G--A--A
130 TATGAGTTGATTTTTTTGAAAAACAGAAATTA
*
10144831 AAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGA
1 AAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* * * * * * *
10144896 TTTTTGAAACATAAATTAAAACACAAAAATTGACAATACCTCAGCGCGCCCCGAAGCTCAACTCA
66 -TTTT------T---TGAAAA-ACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCA
* * * *
10144961 CCTCT--CAATATGAATTAATTTTTTTAAAAAATAGAAATTA
120 CCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTA
* * * *
10145001 AAACAGAAATTAAAAATACCTCAGCGTGTGAGCC-AAGACTCAACTCACCTCTTGCAATATGAGT
1 AAACAGAAATTGAAAATACCTCAGCGTGT---CCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * * **
10145065 TGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTTATTTCTCG
63 TGA-TTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCG
* *
10145130 TAATATGAGTTGAATTTT
127 CAATATGAGTTGATTTTT
10145148 GAAACAGAAA
Statistics
Matches: 778, Mismatches: 102, Indels: 108
0.79 0.10 0.11
Matches are distributed among these distances:
145 1 0.00
146 57 0.07
147 5 0.01
149 9 0.01
150 10 0.01
151 65 0.08
153 47 0.06
154 2 0.00
155 2 0.00
156 1 0.00
157 61 0.08
158 20 0.03
159 47 0.06
160 157 0.20
161 5 0.01
162 110 0.14
163 18 0.02
164 93 0.12
166 2 0.00
168 1 0.00
170 29 0.04
172 34 0.04
173 2 0.00
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.29
Consensus pattern (161 bp):
AAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAAT
ATGAGTTGATTTTTTTGAAAAACAGAAATTA
Found at i:10144492 original size:66 final size:66
Alignment explanation
Indices: 10144386--10144509 Score: 203
Period size: 66 Copynumber: 1.9 Consensus size: 66
10144376 ACAGAAATTG
* * *
10144386 AAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATGA
1 AAAATACCTCAACGTGACCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATGA
10144451 T
66 T
* *
10144452 AAAATACCTCAATGTGACTTGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAAATACCTCAACGTGACCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTTT
10144510 GAAACATAAA
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
66 53 1.00
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.31
Consensus pattern (66 bp):
AAAATACCTCAACGTGACCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATGA
T
Found at i:10144704 original size:311 final size:312
Alignment explanation
Indices: 10143979--10145076 Score: 1169
Period size: 312 Copynumber: 3.5 Consensus size: 312
10143969 ATTGGAAAGA
* * *
10143979 AGAAATCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
1 AGAAATTGAAAATACCTCAGCGTGCCCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* * *
10144044 TTT--------G--A--CAAACATAAATTGAAATTACCTCAGC-GTGTCCTGAGGCTCAACTCAC
66 TTTAAAAAACAGAAATTAAAACAGAAATTGAAAATACCTCAGCAGTGTCCTGAGGCTCAACTCAC
* ** *
10144096 CTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTAAAAATACCTCAGCGTGCCTTGAGG
131 CTCTCGCAATATGAGTTGATTTTTTTG---A--TG--ATTAAAAATACCTCAATGTGACTTGAGG
*
10144161 CTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAAAACATAAATTGAAGAAAACAGAAATTG
189 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTG--AAACATAAATT--A-AAAACAGAAATTG
* * *
10144226 AAATTACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAC
249 AAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAT
* * * * * * *
10144291 AGAAATTAAAAATACGTCATCGTGACCTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 AGAAATTGAAAATACCTCAGCGTGCCCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* * *
10144356 TTTGAAACACAGAAATTAAAACAGAAATTGAAAATACCTCAGC-GTGCCCTGAGGCTCAACTCAC
66 TTTAAAAAACAGAAATTAAAACAGAAATTGAAAATACCTCAGCAGTGTCCTGAGGCTCAACTCAC
*
10144420 CTCTCGCAATATGAGTTGATTTTTTTGATGA-T-AAAATACCTCAATGTGACTTGAGGCCCAACT
131 CTCTCGCAATATGAGTTGATTTTTTTGATGATTAAAAATACCTCAATGTGACTTGAGGCTCAACT
*
10144483 CACCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTAAAACACAAAAATTGACAATACCTCA
196 CACCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTAAAA-ACAGAAATTGA-AATACCTCA
* * *
10144548 GTGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAT
259 GCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAAT
* *
10144603 AGAAATTGAAAATACCTTAGCGTGTCCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AGAAATTGAAAATACCTCAGCGTGCCCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
** * * * * *
10144668 TGAAAAAAACATAAATT-GAGCAGAAATTGAAAATACCTCAACAG-GTCTTGAGGCTCAACTCAC
66 TTTAAAAAACAGAAATTAAAACAGAAATTGAAAATACCTCAGCAGTGTCCTGAGGCTCAACTCAC
* * * *
10144731 CTCTCGTAATATGAGTTGATTTTTTGATGATAAATTGAAAATACCTCAATGTGACTTGAGGTTCA
131 CTCTCGCAATATGAGTTGATTTTTT--TGAT-GATTAAAAATACCTCAATGTGACTTGAGGCTCA
*
10144796 ACTCACCTCTCGCAATATGAGTTGATTTTT------T---TGAAAAACAGAAATTGAAAATACCT
193 ACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTAAAAACAGAAATTG-AAATACCT
*
10144852 CAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTGAAACATAAATT
257 CAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG--A-A-AAA-T
* * * * *
10144913 AAAACACAAAAATTGACAATACCTCAGCGCGCCCCGAAGCTCAACTCACCTCT--CAATATGAAT
1 -------AGAAATTGAAAATACCTCAGCGTGCCCTGAAGCTCAACTCACCTCTCGCAATATGAGT
* * * * *
10144976 TAATTTTTTTAAAAAATAGAAATTAAAACAGAAATTAAAAATACCTCAGC-GTGTGAGCC-AAGA
59 TGATTTTTTTAAAAAACAGAAATTAAAACAGAAATTGAAAATACCTCAGCAGTGT---CCTGAGG
*
10145039 CTCAACTCACCTCTTGCAATATGAGTTGATTTTTTTGA
121 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA
10145077 AAAACAGAAA
Statistics
Matches: 673, Mismatches: 74, Indels: 74
0.82 0.09 0.09
Matches are distributed among these distances:
305 6 0.01
306 56 0.08
307 7 0.01
308 1 0.00
309 3 0.00
310 5 0.01
311 118 0.18
312 143 0.21
313 15 0.02
314 1 0.00
315 84 0.12
316 83 0.12
317 41 0.06
318 35 0.05
319 2 0.00
320 1 0.00
321 1 0.00
322 1 0.00
324 70 0.10
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.29
Consensus pattern (312 bp):
AGAAATTGAAAATACCTCAGCGTGCCCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
TTTAAAAAACAGAAATTAAAACAGAAATTGAAAATACCTCAGCAGTGTCCTGAGGCTCAACTCAC
CTCTCGCAATATGAGTTGATTTTTTTGATGATTAAAAATACCTCAATGTGACTTGAGGCTCAACT
CACCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTAAAAACAGAAATTGAAATACCTCAGC
GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAT
Found at i:10144807 original size:71 final size:72
Alignment explanation
Indices: 10144688--10144916 Score: 286
Period size: 71 Copynumber: 3.2 Consensus size: 72
10144678 ATAAATTGAG
*
10144688 CAGAAATTGAAAATACCTCAACAG-GTCTTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATT
1 CAGAAATTGAAAATACCTCAA-AGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
*
10144752 TTTTG-AT
65 TTTTGAAA
* * * * *
10144759 GATAAATTGAAAATACCTCAATGTGACTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTT
1 CAGAAATTGAAAATACCTCAAAGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TT
10144824 TTTTGAAAAA
65 TTTTG--AAA
** * *
10144834 CAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGA-TT
1 CAGAAATTGAAAATACCTCAAAGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
10144898 TTTGAAA
66 TTTGAAA
*
10144905 CATAAATT-AAAA
1 CAGAAATTGAAAA
10144917 CACAAAAATT
Statistics
Matches: 137, Mismatches: 16, Indels: 11
0.84 0.10 0.07
Matches are distributed among these distances:
70 5 0.04
71 64 0.47
72 7 0.05
73 6 0.04
75 55 0.40
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (72 bp):
CAGAAATTGAAAATACCTCAAAGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
TTTGAAA
Found at i:10144878 original size:75 final size:72
Alignment explanation
Indices: 10144683--10144900 Score: 287
Period size: 75 Copynumber: 3.0 Consensus size: 72
10144673 AAAACATAAA
* *
10144683 TTGAGCAGAAATTGAAAATACCTCAACAG-GTCTTGAGGCTCAACTCACCTCTCGTAATATGAGT
1 TTGAACAGAAATTGAAAATACCTCAAC-GTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
10144747 TGA-TTTT
65 TGATTTTT
** * * * *
10144754 TTGATGATAAATTGAAAATACCTCAATGTGACTTGAGGTTCAACTCACCTCTCGCAATATGAGTT
1 TTGAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
10144819 GATTTTT
66 GATTTTT
* * *
10144826 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATAA
1 TTG---AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
10144891 GTTGATTTTT
63 GTTGATTTTT
10144901 GAAACATAAA
Statistics
Matches: 126, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
70 1 0.01
71 58 0.46
72 7 0.06
75 60 0.48
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (72 bp):
TTGAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTT
Found at i:10144985 original size:85 final size:86
Alignment explanation
Indices: 10144829--10145080 Score: 266
Period size: 85 Copynumber: 2.9 Consensus size: 86
10144819 GATTTTTTTG
* * *
10144829 AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT-AAGT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGACCCGAAGCTCAACTCACCTCT-GCAATATGAA-T
*
10144893 TGA--TTTTTGAAACAT-AAATT
64 TGATTTTTTTGAAAAATAAAATT
* * * *
10144913 AAAACACAAAAATTGACAATACCTCAGCGCGCCCCGAAGCTCAACTCACCTCT-CAATATGAATT
1 AAAA-ACAGAAATTGAAAATACCTCAGCGTGACCCGAAGCTCAACTCACCTCTGCAATATGAATT
* *
10144977 AATTTTTTTAAAAAATAGAAATT
65 GATTTTTTTGAAAAATA-AAATT
* *
10145000 -AAAACAGAAATTAAAAATACCTCAGCGTGTGAGCC-AAGACTCAACTCACCTCTTGCAATATGA
1 AAAAACAGAAATTGAAAATACCTCAGC--GTGACCCGAAG-CTCAACTCACCTC-TGCAATATGA
*
10145063 GTTGATTTTTTTGAAAAA
62 ATTGATTTTTTTGAAAAA
10145081 CAGAAATTGA
Statistics
Matches: 139, Mismatches: 18, Indels: 17
0.80 0.10 0.10
Matches are distributed among these distances:
83 9 0.06
84 6 0.04
85 72 0.52
86 6 0.04
87 22 0.16
88 1 0.01
89 23 0.17
ACGTcount: A:0.40, C:0.21, G:0.13, T:0.27
Consensus pattern (86 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGACCCGAAGCTCAACTCACCTCTGCAATATGAATTG
ATTTTTTTGAAAAATAAAATT
Found at i:10149329 original size:137 final size:137
Alignment explanation
Indices: 10148892--10149338 Score: 682
Period size: 137 Copynumber: 3.2 Consensus size: 137
10148882 TGCCCTACTC
* * * * * *
10148892 CAGTCCGCTCCACTACAACTTCAGGGAGATAAGGCTTGTAATTTTAACCTGATCCACTGCAACTT
1 CAGTCTGCTCCACTGCAACTTCAGGAAGATAAGGCTTG---TTTTGACCTGCTCTACTGCAACTT
**
10148957 CA-AGAAGATGAGG-TCTGCGATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAG
63 CAGAG-AGAT-AGGATCTGTAATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAG
10149020 ATTTGCTATCTT
126 ATTTGCTATCTT
* * * *
10149032 CAGTCTGTTCCACTGCAACTTTAGGGAGATAAGGCTTGTTTTGACCTACTCTACTGCAACTTCAG
1 CAGTCTGCTCCACTGCAACTTCAGGAAGATAAGGCTTGTTTTGACCTGCTCTACTGCAACTTCAG
* *
10149097 AGAGATAGGATCTGTAATTTATAGCTTCAATCTGTTCCACTACAACTTCAGGGAAATTAGATTTG
66 AGAGATAGGATCTGTAATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTG
10149162 CTATCTT
131 CTATCTT
* *
10149169 CAGTCTGCTCCACTGCAATTTCAGGAAGATAAGGCTTGTTTTGACCTGCTCTACTACAACTTCAG
1 CAGTCTGCTCCACTGCAACTTCAGGAAGATAAGGCTTGTTTTGACCTGCTCTACTGCAACTTCAG
10149234 AGAGATAGGATCTGTAATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTG
66 AGAGATAGGATCTGTAATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTG
10149299 CTATCTT
131 CTATCTT
*
10149306 CAGTCTGCTCCACTGCAACTTCAGGAGGATAAG
1 CAGTCTGCTCCACTGCAACTTCAGGAAGATAAG
10149339 ATTAATGGCT
Statistics
Matches: 283, Mismatches: 22, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
136 3 0.01
137 244 0.86
138 2 0.01
140 34 0.12
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.32
Consensus pattern (137 bp):
CAGTCTGCTCCACTGCAACTTCAGGAAGATAAGGCTTGTTTTGACCTGCTCTACTGCAACTTCAG
AGAGATAGGATCTGTAATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTG
CTATCTT
Found at i:10149338 original size:45 final size:45
Alignment explanation
Indices: 10148984--10149341 Score: 221
Period size: 45 Copynumber: 7.9 Consensus size: 45
10148974 CGATTTATAG
* *
10148984 CTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGCTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTAT
* * * **
10149029 CTTCAGTCTGTTCCACTGCAACTTTAGGGAGATAAGGCTTG-T-T
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTAT
* * * * * * **
10149072 -TT-GACCTACTCTACTGCAACTTCAGAGAGATAGGATCTGTAATTTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-T-T--GCTAT
* * * *
10149119 AGCTTCAATCTGTTCCACTACAACTTCAGGGAAATTAGATTTGCTAT
1 --CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTAT
* * * **
10149166 CTTCAGTCTGCTCCACTGCAATTTCAGGAAGATAAGGCTTG-T-T
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTAT
* * * * * * **
10149209 -TT-GACCTGCTCTACTACAACTTCAGAGAGATAGGATCTGTAATTTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-T-T--GCTAT
* *
10149256 AGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGCTAT
1 --CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTAT
*
10149303 CTTCAGTCTGCTCCACTGCAACTTCA-GGAGGATAAGATT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGA-GATAAGATT
10149342 AATGGCTGCG
Statistics
Matches: 229, Mismatches: 63, Indels: 42
0.69 0.19 0.13
Matches are distributed among these distances:
41 46 0.20
42 6 0.03
43 4 0.02
44 5 0.02
45 100 0.44
46 2 0.01
47 8 0.03
49 2 0.01
50 6 0.03
51 50 0.22
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (45 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTAT
Found at i:10164400 original size:48 final size:48
Alignment explanation
Indices: 10164344--10164437 Score: 120
Period size: 48 Copynumber: 2.0 Consensus size: 48
10164334 AGGGAATTCT
* *
10164344 GTTGAATCCTTTATTGTTGCG-AGTT-GAGCTAACTTAGGCGTTTTTACG
1 GTTGAATCCATTATTGGTG-GAAGTTAG-GCTAACTTAGGCGTTTTTACG
* *
10164392 GTTGAATCCATTATTGGTGGAAGTTAGGCTGACTTAGGTGTTTTTA
1 GTTGAATCCATTATTGGTGGAAGTTAGGCTAACTTAGGCGTTTTTA
10164438 AGCCAAGAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
47 1 0.03
48 38 0.95
49 1 0.03
ACGTcount: A:0.20, C:0.12, G:0.27, T:0.41
Consensus pattern (48 bp):
GTTGAATCCATTATTGGTGGAAGTTAGGCTAACTTAGGCGTTTTTACG
Found at i:10166534 original size:15 final size:15
Alignment explanation
Indices: 10166504--10166547 Score: 79
Period size: 15 Copynumber: 2.9 Consensus size: 15
10166494 TGGCCTGTCA
10166504 CATTAAGTATTTTACT
1 CATTAAGTA-TTTACT
10166520 CATTAAGTATTTACT
1 CATTAAGTATTTACT
10166535 CATTAAGTATTTA
1 CATTAAGTATTTA
10166548 AAACACATGT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
15 19 0.68
16 9 0.32
ACGTcount: A:0.34, C:0.11, G:0.07, T:0.48
Consensus pattern (15 bp):
CATTAAGTATTTACT
Found at i:10166671 original size:39 final size:39
Alignment explanation
Indices: 10166628--10166706 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
10166618 ACATAGGCAA
* *
10166628 TATGGATGAAATGAAAGATGCAATGCGTGGATAAAAATT
1 TATGGATGAAATGAAAAATGCAATGCATGGATAAAAATT
10166667 TATGGATGAAATGAAAAATGCAATGCATGGATAAAAATT
1 TATGGATGAAATGAAAAATGCAATGCATGGATAAAAATT
10166706 T
1 T
10166707 TGTATGATAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.46, C:0.05, G:0.23, T:0.27
Consensus pattern (39 bp):
TATGGATGAAATGAAAAATGCAATGCATGGATAAAAATT
Found at i:10173615 original size:19 final size:19
Alignment explanation
Indices: 10173591--10173630 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
10173581 AAAAAAAAAC
10173591 TTAAAACCTAGTAATGAAA
1 TTAAAACCTAGTAATGAAA
10173610 TTAAAACCTAGTAATGAAA
1 TTAAAACCTAGTAATGAAA
10173629 TT
1 TT
10173631 TAGAAAACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.50, C:0.10, G:0.10, T:0.30
Consensus pattern (19 bp):
TTAAAACCTAGTAATGAAA
Found at i:10174590 original size:26 final size:24
Alignment explanation
Indices: 10174522--10174595 Score: 64
Period size: 23 Copynumber: 3.1 Consensus size: 24
10174512 ATAAAAACAC
*
10174522 TATTATTAAATTGTATTT-AATAA
1 TATTATTAAATTATATTTAAATAA
* * *
10174545 TAATATTAAAATATGA-TTAAATTATT
1 TATTATTAAATTAT-ATTTAAA-TA-A
10174571 TATTATTAAATTATATTT-AATAA
1 TATTATTAAATTATATTTAAATAA
10174594 TA
1 TA
10174596 ATTCTATTAA
Statistics
Matches: 39, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
23 15 0.38
24 5 0.13
25 5 0.13
26 14 0.36
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (24 bp):
TATTATTAAATTATATTTAAATAA
Found at i:10174603 original size:26 final size:25
Alignment explanation
Indices: 10174524--10174606 Score: 73
Period size: 26 Copynumber: 3.3 Consensus size: 25
10174514 AAAAACACTA
*
10174524 TTATTAAATTGTATTTAATAATAA-
1 TTATTAAATTATATTTAATAATAAT
* * * *
10174548 -TATTAAAATATGATTAAATTAT-TT
1 TTATTAAATTAT-ATTTAATAATAAT
10174572 ATTATTAAATTATATTTAATAATAAT
1 -TTATTAAATTATATTTAATAATAAT
10174598 TCTATTAAA
1 T-TATTAAA
10174607 ATTTAATAAC
Statistics
Matches: 44, Mismatches: 9, Indels: 10
0.70 0.14 0.16
Matches are distributed among these distances:
23 9 0.20
24 8 0.18
25 9 0.20
26 18 0.41
ACGTcount: A:0.47, C:0.01, G:0.02, T:0.49
Consensus pattern (25 bp):
TTATTAAATTATATTTAATAATAAT
Found at i:10177591 original size:16 final size:18
Alignment explanation
Indices: 10177570--10177612 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
10177560 TTTTTATTAC
10177570 AATTTATATA-CT-AATA
1 AATTTATATATCTAAATA
*
10177586 AATTTATAATATTTAAATA
1 AATTTAT-ATATCTAAATA
10177605 AATTTATA
1 AATTTATA
10177613 AAACATAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 7 0.30
17 3 0.13
18 2 0.09
19 11 0.48
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (18 bp):
AATTTATATATCTAAATA
Found at i:10181806 original size:22 final size:22
Alignment explanation
Indices: 10181775--10181816 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
10181765 ATGCAATGAA
*
10181775 TGAATGAATGACAAATGAATAT
1 TGAATAAATGACAAATGAATAT
**
10181797 TGAATAAATGATGAATGAAT
1 TGAATAAATGACAAATGAAT
10181817 GTTAGTCATG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.50, C:0.02, G:0.19, T:0.29
Consensus pattern (22 bp):
TGAATAAATGACAAATGAATAT
Found at i:10185745 original size:32 final size:33
Alignment explanation
Indices: 10185694--10185761 Score: 111
Period size: 32 Copynumber: 2.1 Consensus size: 33
10185684 TAATTGGACC
* *
10185694 ATTAGTTTGGGTTTGGGTATTTGGTTGAGTTTA
1 ATTAGGTTGGGTTTCGGTATTTGGTTGAGTTTA
10185727 ATTAGGTT-GGTTTCGGTATTTGGTTGAGTTTA
1 ATTAGGTTGGGTTTCGGTATTTGGTTGAGTTTA
10185759 ATT
1 ATT
10185762 GTTTAGGTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
32 26 0.79
33 7 0.21
ACGTcount: A:0.16, C:0.01, G:0.31, T:0.51
Consensus pattern (33 bp):
ATTAGGTTGGGTTTCGGTATTTGGTTGAGTTTA
Found at i:10186881 original size:24 final size:24
Alignment explanation
Indices: 10186836--10186883 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
10186826 CATTAAAATT
* * *
10186836 TTGACGATTTTACCCTTTGTAAAA
1 TTGACAATTTTACCCATGGTAAAA
*
10186860 TTGACAATTTTACTCATGGTAAAA
1 TTGACAATTTTACCCATGGTAAAA
10186884 GTTCGAGAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.40
Consensus pattern (24 bp):
TTGACAATTTTACCCATGGTAAAA
Found at i:10189646 original size:40 final size:40
Alignment explanation
Indices: 10189592--10189776 Score: 230
Period size: 40 Copynumber: 4.6 Consensus size: 40
10189582 CTTGCACAAG
* * *
10189592 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCACAGAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* *
10189632 GCCTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
10189672 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * *
10189712 GCCTTC-GGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCA-CTAGCACAAAT
10189753 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
10189777 CATTCGAATA
Statistics
Matches: 122, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
39 3 0.02
40 89 0.73
41 27 0.22
42 3 0.02
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:10202780 original size:18 final size:18
Alignment explanation
Indices: 10202757--10202798 Score: 68
Period size: 18 Copynumber: 2.3 Consensus size: 18
10202747 CTCCCTCTCA
10202757 AAAAATTCAAAAA-TATAT
1 AAAAATT-AAAAATTATAT
10202775 AAAAATTAAAAATTATAT
1 AAAAATTAAAAATTATAT
10202793 AAAAAT
1 AAAAAT
10202799 CATTTTTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 5 0.22
18 18 0.78
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (18 bp):
AAAAATTAAAAATTATAT
Found at i:10205819 original size:16 final size:16
Alignment explanation
Indices: 10205799--10205839 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 16
10205789 GGTGGAGTGG
10205799 AAAAAGAAT-GGAAAA
1 AAAAAGAATAGGAAAA
10205814 AGAAAAGAATAAGGAAAA
1 A-AAAAGAAT-AGGAAAA
10205832 AAAAAGAA
1 AAAAAGAA
10205840 AATCAATTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 1 0.04
16 8 0.35
17 7 0.30
18 7 0.30
ACGTcount: A:0.76, C:0.00, G:0.20, T:0.05
Consensus pattern (16 bp):
AAAAAGAATAGGAAAA
Found at i:10206444 original size:22 final size:22
Alignment explanation
Indices: 10206418--10206509 Score: 79
Period size: 22 Copynumber: 4.3 Consensus size: 22
10206408 CATAAATTAA
*
10206418 ATATTATAT-TCAATTTATTTAT
1 ATATTATATCT-AATATATTTAT
* *
10206440 ATATTATATCTATTTTATTT-T
1 ATATTATATCTAATATATTTAT
10206461 ATA-TATATTCTAA-ATATTTTAT
1 ATATTATA-TCTAATATA-TTTAT
*
10206483 ATATT-TATAT-ATATATTTAT
1 ATATTATATCTAATATATTTAT
10206503 ATATTAT
1 ATATTAT
10206510 TATTTTTATT
Statistics
Matches: 59, Mismatches: 4, Indels: 15
0.76 0.05 0.19
Matches are distributed among these distances:
20 17 0.29
21 17 0.29
22 23 0.39
23 2 0.03
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (22 bp):
ATATTATATCTAATATATTTAT
Found at i:10206464 original size:16 final size:17
Alignment explanation
Indices: 10206433--10206512 Score: 76
Period size: 16 Copynumber: 4.8 Consensus size: 17
10206423 ATATTCAATT
*
10206433 TATTTATATATTATATC
1 TATTTATATATTATATA
*
10206450 TATTT-TATTTTATATA
1 TATTTATATATTATATA
* *
10206466 TATTCTAAATATTTTATA
1 TATT-TATATATTATATA
*
10206484 TATTTATATA-TATATT
1 TATTTATATATTATATA
*
10206500 TATATAT-TATTAT
1 TATTTATATATTAT
10206513 TTTTATTTCT
Statistics
Matches: 51, Mismatches: 9, Indels: 7
0.76 0.13 0.10
Matches are distributed among these distances:
15 2 0.04
16 26 0.51
17 11 0.22
18 12 0.24
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (17 bp):
TATTTATATATTATATA
Found at i:10206497 original size:12 final size:12
Alignment explanation
Indices: 10206480--10206510 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
10206470 CTAAATATTT
10206480 TATATATTTATA
1 TATATATTTATA
10206492 TATATATTTATA
1 TATATATTTATA
10206504 TAT-TATT
1 TATATATT
10206511 ATTTTTATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 4 0.21
12 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (12 bp):
TATATATTTATA
Found at i:10206519 original size:20 final size:21
Alignment explanation
Indices: 10206430--10206520 Score: 73
Period size: 20 Copynumber: 4.4 Consensus size: 21
10206420 ATTATATTCA
*
10206430 ATTTATTTATATATTATATCT
1 ATTTATTTATATATTATATAT
*
10206451 ATTTTATTT-TATA-TATATTCT
1 A-TTTATTTATATATTATA-TAT
**
10206472 AAATATTTTATATATT-TATAT
1 ATTTA-TTTATATATTATATAT
*
10206493 ATATATTTATATATTAT-TAT
1 ATTTATTTATATATTATATAT
*
10206513 TTTTATTT
1 ATTTATTT
10206521 CTTTGTATAC
Statistics
Matches: 58, Mismatches: 6, Indels: 13
0.75 0.08 0.17
Matches are distributed among these distances:
20 25 0.43
21 19 0.33
22 13 0.22
23 1 0.02
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (21 bp):
ATTTATTTATATATTATATAT
Found at i:10213969 original size:38 final size:37
Alignment explanation
Indices: 10213939--10214022 Score: 132
Period size: 38 Copynumber: 2.2 Consensus size: 37
10213929 CATTCTGATT
*
10213939 TTTAGTTTTAATTGTGAAAATAATGGCACATAATTTAA
1 TTTAGTTTTAATTGTGAAAATAATGGCACAT-ATTGAA
*
10213977 TTTAGTTTTAATTGTGAAAATAATGGCACATAATTTAA
1 TTTAGTTTTAATTGTGAAAATAATGGCACAT-ATTGAA
10214015 TTTAGTTT
1 TTTAGTTT
10214023 AGAGGTTGAG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 46 1.00
ACGTcount: A:0.37, C:0.05, G:0.13, T:0.45
Consensus pattern (37 bp):
TTTAGTTTTAATTGTGAAAATAATGGCACATATTGAA
Found at i:10219459 original size:10 final size:11
Alignment explanation
Indices: 10219443--10219472 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
10219433 GTTTTTGTGA
10219443 AAAAATAAAAT
1 AAAAATAAAAT
10219454 -AAAATAAAAT
1 AAAAATAAAAT
10219464 AAAAATAAA
1 AAAAATAAA
10219473 GAACACACAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:10220994 original size:18 final size:18
Alignment explanation
Indices: 10220973--10221014 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
10220963 TTTATAAAGA
10220973 AAATATATATAAT-AATAT
1 AAATA-ATATAATAAATAT
*
10220991 AAATAATATGATAAATAT
1 AAATAATATAATAAATAT
10221009 AAATAA
1 AAATAA
10221015 AAATATATAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.27
18 16 0.73
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (18 bp):
AAATAATATAATAAATAT
Found at i:10222643 original size:44 final size:43
Alignment explanation
Indices: 10222581--10222814 Score: 306
Period size: 44 Copynumber: 5.3 Consensus size: 43
10222571 CGAAATGTTT
* * *
10222581 GATCTACTTTCTGACAATACAGAGACACCAAATCTGCTATCTTC
1 GATCTGCTCTCTGACAATACAGAGACGCCAAATCTG-TATCTTC
* *
10222625 GATCTGCTCTCTGGCAATACAGAGACGCCAAACCTGTTATCTTC
1 GATCTGCTCTCTGACAATACAGAGACGCCAAATCTG-TATCTTC
* *
10222669 GATCTGCTCTCTGACAATATAGAGATGCCAAATCTGTCATCTTC
1 GATCTGCTCTCTGACAATACAGAGACGCCAAATCTGT-ATCTTC
* * *
10222713 GATCTGCTCTCTGACAATATAGAGGCGCCAAATGTGTTATCTTC
1 GATCTGCTCTCTGACAATACAGAGACGCCAAATCTG-TATCTTC
* * *
10222757 GATCTGCTCTCTGCCCATACAGAGACGTCAAATCTGTCATCTTC
1 GATCTGCTCTCTGACAATACAGAGACGCCAAATCTGT-ATCTTC
10222801 GATCTGCTCTCTGA
1 GATCTGCTCTCTGA
10222815 NNNNNNNNNN
Statistics
Matches: 167, Mismatches: 20, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
43 2 0.01
44 164 0.98
45 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.30
Consensus pattern (43 bp):
GATCTGCTCTCTGACAATACAGAGACGCCAAATCTGTATCTTC
Found at i:10246595 original size:21 final size:21
Alignment explanation
Indices: 10246560--10246611 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
10246550 ATTTATAAAG
*
10246560 AAAATATATATAATA-ATATA
1 AAAATATATATAATACAAATA
10246580 AATAATATGATA-AATACAAATA
1 AA-AATAT-ATATAATACAAATA
10246602 AAAATATATA
1 AAAATATATA
10246612 CCATTTTACA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
20 5 0.18
21 14 0.50
22 9 0.32
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (21 bp):
AAAATATATATAATACAAATA
Found at i:10255782 original size:27 final size:27
Alignment explanation
Indices: 10255752--10255929 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
10255742 ATATTGAGTC
* * * *
10255752 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
10255779 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
10255806 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
10255834 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
10255861 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
10255888 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
10255915 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
10255930 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:10255891 original size:82 final size:81
Alignment explanation
Indices: 10255773--10255928 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
10255763 TGCTATATAA
* *
10255773 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
10255838 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
10255855 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
10255919 CACTTAGTGC
65 CACTTAGTGC
10255929 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:10262394 original size:21 final size:22
Alignment explanation
Indices: 10262370--10262418 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
10262360 TTTTTTGTTA
*
10262370 TTGGGCCAT-TTAATTTGTATT
1 TTGGGCCATGTTAATTTGAATT
* *
10262391 TTGGGCCTTGTTATTTTGAATT
1 TTGGGCCATGTTAATTTGAATT
10262413 TTGGGC
1 TTGGGC
10262419 TTGGATATTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 8 0.33
22 16 0.67
ACGTcount: A:0.14, C:0.10, G:0.24, T:0.51
Consensus pattern (22 bp):
TTGGGCCATGTTAATTTGAATT
Found at i:10262427 original size:22 final size:22
Alignment explanation
Indices: 10262383--10262427 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
10262373 GGCCATTTAA
* *
10262383 TTTGTATTTTGGGCCTTGTTAT
1 TTTGAATTTTGGGCCTTGATAT
10262405 TTTGAATTTTGGG-CTTGGATAT
1 TTTGAATTTTGGGCCTT-GATAT
10262427 T
1 T
10262428 ATTATGGACA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 3 0.15
22 17 0.85
ACGTcount: A:0.13, C:0.07, G:0.24, T:0.56
Consensus pattern (22 bp):
TTTGAATTTTGGGCCTTGATAT
Found at i:10263711 original size:17 final size:17
Alignment explanation
Indices: 10263689--10263722 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
10263679 CCCGTTAAAA
*
10263689 GTAAAAATCTCTAATTT
1 GTAAAAACCTCTAATTT
10263706 GTAAAAACCTCTAATTT
1 GTAAAAACCTCTAATTT
10263723 AAGTTTCAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.41, C:0.15, G:0.06, T:0.38
Consensus pattern (17 bp):
GTAAAAACCTCTAATTT
Found at i:10266601 original size:11 final size:11
Alignment explanation
Indices: 10266585--10266610 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
10266575 ATTAAAAAGC
10266585 AAAAGCTTCCA
1 AAAAGCTTCCA
10266596 AAAAGCTTCCA
1 AAAAGCTTCCA
10266607 AAAA
1 AAAA
10266611 TTATTTGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.23, G:0.08, T:0.15
Consensus pattern (11 bp):
AAAAGCTTCCA
Found at i:10267134 original size:16 final size:16
Alignment explanation
Indices: 10267099--10267135 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
10267089 TAATCCTTTA
10267099 AAAATTATAAAAACAT
1 AAAATTATAAAAACAT
10267115 -AAATTATAAAAA-ATT
1 AAAATTATAAAAACA-T
10267130 AAAATT
1 AAAATT
10267136 TCATCTGGCC
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 1 0.05
15 13 0.68
16 5 0.26
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (16 bp):
AAAATTATAAAAACAT
Found at i:10268005 original size:127 final size:128
Alignment explanation
Indices: 10267826--10268112 Score: 352
Period size: 127 Copynumber: 2.2 Consensus size: 128
10267816 AGTCCAACGA
* * *
10267826 AAAATCGAAACCCAGCAC-AGTAGGGCACGATTCCTCGAATTTCTAGACATTGAACATTACCTT-
1 AAAATCGAAACCCAGCACGA-TAGGGCACGATTCCCCGAATTTCCAAACATTGAACATTACCTTC
* * *
10267889 GTTTT-A-GAATTTAGAAAATATGCG-TGAAA-TTCTAAAGGAATATTTGATTATTTTGAACAAA
65 GTTTTAAGGAATTTACAAAATACG-GATGAAATTTC-AAAGGAA-ATTTGATTATTTCG-ACAAA
*
10267950 TAG
126 CAG
* * * *
10267953 GAAATTGCAACCCAGCACGATAGGGCACGATTCCCCGAATTTCCAAACATTGAACATTCCCTTCG
1 AAAATCGAAACCCAGCACGATAGGGCACGATTCCCCGAATTTCCAAACATTGAACATTACCTTCG
* *
10268018 TTTTAAGGAATTTTCAAAGTACGGATGAAATTTCAAAGGAAATTTGATTATTTCGACAAACAG
66 TTTTAAGGAATTTACAAAATACGGATGAAATTTCAAAGGAAATTTGATTATTTCGACAAACAG
* *
10268081 AAAATCGAAACCCAGCACGGTTGGGCACGATT
1 AAAATCGAAACCCAGCACGATAGGGCACGATT
10268113 GGGCACGATT
Statistics
Matches: 136, Mismatches: 18, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
127 54 0.40
128 40 0.29
129 15 0.11
130 24 0.18
131 3 0.02
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (128 bp):
AAAATCGAAACCCAGCACGATAGGGCACGATTCCCCGAATTTCCAAACATTGAACATTACCTTCG
TTTTAAGGAATTTACAAAATACGGATGAAATTTCAAAGGAAATTTGATTATTTCGACAAACAG
Found at i:10271053 original size:88 final size:88
Alignment explanation
Indices: 10270929--10271178 Score: 412
Period size: 88 Copynumber: 2.9 Consensus size: 88
10270919 ATTTTTAGCT
*
10270929 TGTTACCCTACTACTTA-AGGGTTAAGGCTCACTGTCTTCGATTTGCTCCACTACTGCTTAGGGA
1 TGTTACCCTACTACTTAGGGGGTTAAGGCTCACTGTCTTCGATTTGCTCCACTACTGCTTAGGGA
*
10270993 GACAAGATCTACAATCTTCGGCC
66 GATAAGATCTACAATCTTCGGCC
* * *
10271016 TGTTACCCTACTACTTAGGGGGTTAAGGCTCATTGTCTTTGATTTGCTCCACTACTGCTTAGGGG
1 TGTTACCCTACTACTTAGGGGGTTAAGGCTCACTGTCTTCGATTTGCTCCACTACTGCTTAGGGA
* *
10271081 GATAAGATTTACAATCTTTGGCC
66 GATAAGATCTACAATCTTCGGCC
**
10271104 TGTTACCCTACTACTTAGGGGGTTAAGGCTCACTGTCTTCGATCCGCTCCACTACTGCTTAGGGA
1 TGTTACCCTACTACTTAGGGGGTTAAGGCTCACTGTCTTCGATTTGCTCCACTACTGCTTAGGGA
10271169 GATAAGATCT
66 GATAAGATCT
10271179 GTGAATTCAC
Statistics
Matches: 149, Mismatches: 13, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
87 17 0.11
88 132 0.89
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.33
Consensus pattern (88 bp):
TGTTACCCTACTACTTAGGGGGTTAAGGCTCACTGTCTTCGATTTGCTCCACTACTGCTTAGGGA
GATAAGATCTACAATCTTCGGCC
Found at i:10271071 original size:44 final size:44
Alignment explanation
Indices: 10270936--10271167 Score: 148
Period size: 44 Copynumber: 5.3 Consensus size: 44
10270926 GCTTGTTACC
* * *
10270936 CTACTACTTA-AGGGTTAAGGCTCACTGTCTTCGATTTGCTCCA
1 CTACTACTTAGGGGGTTAAGGCTCACTGTCTTTGATCTGCTCCA
* * ** * ** * ** *
10270979 CTACTGCTTAGGGAGACAA-GATCTACAATCTTCGGCCTGTTACC-
1 CTACTACTTAGGGGGTTAAGGCTC-ACTGTCTTTGATCTGCT-CCA
* *
10271023 CTACTACTTAGGGGGTTAAGGCTCATTGTCTTTGATTTGCTCCA
1 CTACTACTTAGGGGGTTAAGGCTCACTGTCTTTGATCTGCTCCA
* * ** * ** ** *
10271067 CTACTGCTTAGGGGGATAAGATTTACAATCTTTGGCCTGTTACC-
1 CTACTACTTAGGGGGTTAAGGCTCACTGTCTTTGATCTGCT-CCA
* *
10271111 CTACTACTTAGGGGGTTAAGGCTCACTGTCTTCGATCCGCTCCA
1 CTACTACTTAGGGGGTTAAGGCTCACTGTCTTTGATCTGCTCCA
*
10271155 CTACTGCTTAGGG
1 CTACTACTTAGGG
10271168 AGATAAGATC
Statistics
Matches: 132, Mismatches: 50, Indels: 13
0.68 0.26 0.07
Matches are distributed among these distances:
43 16 0.12
44 109 0.83
45 7 0.05
ACGTcount: A:0.21, C:0.25, G:0.22, T:0.33
Consensus pattern (44 bp):
CTACTACTTAGGGGGTTAAGGCTCACTGTCTTTGATCTGCTCCA
Found at i:10272014 original size:53 final size:53
Alignment explanation
Indices: 10271951--10272111 Score: 198
Period size: 61 Copynumber: 2.9 Consensus size: 53
10271941 AAACCTCTTT
*
10271951 GGTCTCAAAGTGCCCTTTACGGGTTTTCACTTTGGCCTTTCTATTTTTTTTAG
1 GGTCTCAAAGTGCCCTTTACGGGTTTTCACCTTGGCCTTTCTATTTTTTTTAG
* * *
10272004 GGTCTCAAAGTGCCCTATATGGGTTTTCACCTTGGTCTCTCTATTTTATTTTATTTTTTAG
1 GGTCTCAAAGTGCCCTTTACGGGTTTTCACCTTGG---C-CT-TTCTA--TT-TTTTTTAG
*
10272065 GGTCTCAAAGCGCCCTTTACGGGTTTTCACCTTGGCCTTTCT-TTTTT
1 GGTCTCAAAGTGCCCTTTACGGGTTTTCACCTTGGCCTTTCTATTTTT
10272112 AGGTAAAATA
Statistics
Matches: 92, Mismatches: 8, Indels: 17
0.79 0.07 0.15
Matches are distributed among these distances:
52 3 0.03
53 34 0.37
56 4 0.04
57 4 0.04
58 5 0.05
60 2 0.02
61 40 0.43
ACGTcount: A:0.14, C:0.22, G:0.18, T:0.47
Consensus pattern (53 bp):
GGTCTCAAAGTGCCCTTTACGGGTTTTCACCTTGGCCTTTCTATTTTTTTTAG
Found at i:10283049 original size:129 final size:131
Alignment explanation
Indices: 10282814--10283062 Score: 310
Period size: 129 Copynumber: 1.9 Consensus size: 131
10282804 ATATAAGTAC
* * * *
10282814 AATTCTAAAGGAATATTCGATAATTTTGAACAAACAGGAAATTGCAACCCAGCACGATAGGGCAC
1 AATTCTAAAGGAATATTCGATAATTTCGAACAAACAGAAAATCGAAACCCAGCACGATAGGGCAC
* * *
10282879 GATTCCCTGAATTTCCAAACATCGAACATTGCCTTCATTTTAAG-GAATTTTCAAAGTACGGATG
66 GATTCCCTGAATTCCCAAACATCGAACATTACCTTCATTTT-AGTGAATCTTCAAAGTACGGATG
10282943 AA
130 AA
* * * *
10282945 AATTC-AAAGGAATATTTGATTATTTCG-ACAAACAGAAAATCGAAACCCAGCACGGTTGGGCAC
1 AATTCTAAAGGAATATTCGATAATTTCGAACAAACAGAAAATCGAAACCCAGCACGATAGGGCAC
* **
10283008 GATT-CCTCGAGTTCCCAAACATC-AACTATTACCTTTGTTTTAGTGAATCTTCAAA
66 GATTCCCT-GAATTCCCAAACATCGAAC-ATTACCTTCATTTTAGTGAATCTTCAAA
10283063 TAAACAGTTG
Statistics
Matches: 101, Mismatches: 14, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
128 8 0.08
129 69 0.68
130 19 0.19
131 5 0.05
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28
Consensus pattern (131 bp):
AATTCTAAAGGAATATTCGATAATTTCGAACAAACAGAAAATCGAAACCCAGCACGATAGGGCAC
GATTCCCTGAATTCCCAAACATCGAACATTACCTTCATTTTAGTGAATCTTCAAAGTACGGATGA
A
Found at i:10285156 original size:21 final size:21
Alignment explanation
Indices: 10285115--10285156 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
10285105 CGTGGCACGT
* *
10285115 GTACGGGGGCTGTGTGCTGGC
1 GTACGGAGGCTGTGGGCTGGC
10285136 GTACGGAGGC-GTGGGCGTGGC
1 GTACGGAGGCTGTGGGC-TGGC
10285157 TGCTGAAGTG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.07, C:0.19, G:0.55, T:0.19
Consensus pattern (21 bp):
GTACGGAGGCTGTGGGCTGGC
Found at i:10292806 original size:24 final size:25
Alignment explanation
Indices: 10292770--10292819 Score: 59
Period size: 24 Copynumber: 2.0 Consensus size: 25
10292760 TCAAATATGC
10292770 ATTTAGGTCAATT-TACCCTAGGGGT
1 ATTTAGGTCAATTAT-CCCTAGGGGT
* *
10292795 ATTTCGGT-AATTATCTCTAGGGGT
1 ATTTAGGTCAATTATCCCTAGGGGT
10292819 A
1 A
10292820 AAACTGTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
24 14 0.64
25 8 0.36
ACGTcount: A:0.24, C:0.14, G:0.24, T:0.38
Consensus pattern (25 bp):
ATTTAGGTCAATTATCCCTAGGGGT
Found at i:10303507 original size:62 final size:62
Alignment explanation
Indices: 10303436--10303559 Score: 230
Period size: 62 Copynumber: 2.0 Consensus size: 62
10303426 CTCTAGCTCT
10303436 ATTTAGGCAATAATGCTCTATTTTTTATTCTAATACTCACCACTCCCGCTCCTCCCTTCTCC
1 ATTTAGGCAATAATGCTCTATTTTTTATTCTAATACTCACCACTCCCGCTCCTCCCTTCTCC
* *
10303498 ATTTAGGCAATAATGCTCTATTTTTTATTCTAATACTCACCACTCCTGCTCCTCTCTTCTCC
1 ATTTAGGCAATAATGCTCTATTTTTTATTCTAATACTCACCACTCCCGCTCCTCCCTTCTCC
10303560 TTTGGATGCC
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 60 1.00
ACGTcount: A:0.21, C:0.32, G:0.06, T:0.40
Consensus pattern (62 bp):
ATTTAGGCAATAATGCTCTATTTTTTATTCTAATACTCACCACTCCCGCTCCTCCCTTCTCC
Done.