Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 43 of 255
Found at i:11659775 original size:98 final size:97
Alignment explanation
Indices: 11659586--11659769 Score: 291
Period size: 98 Copynumber: 1.9 Consensus size: 97
11659576 GCACATCGCC
* *
11659586 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACACTAGCCATTCGACTTTACCACATATACATATCTCA-ATACATATTTCACATT
11659651 GACCATTCAGCTTTACCACATATGCATATCTCA
65 GACCATTCAGCTTTACCACATATGCATATCTCA
* *
11659684 TACATATTTCACATTAGCCATTCGACTTTACCACATATACATTTCTC-ATACATATTTCACATT-
1 TACATATTTCACACTAGCCATTCGACTTTACCACATATACATATCTCAATACATATTTCACATTG
*
11659747 AGCCATTCGGCTTTACCACATAT
66 A-CCATTCAGCTTTACCACATAT
11659770 ATGCATGTTC
Statistics
Matches: 80, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
95 1 0.01
96 35 0.44
98 44 0.55
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (97 bp):
TACATATTTCACACTAGCCATTCGACTTTACCACATATACATATCTCAATACATATTTCACATTG
ACCATTCAGCTTTACCACATATGCATATCTCA
Found at i:11659803 original size:47 final size:47
Alignment explanation
Indices: 11659740--11659933 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
11659730 CATACATATT
* * * *
11659740 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
11659787 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
11659834 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * **
11659881 TCACATTGGCCATTCGACCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
11659928 TCACAT
1 TCACAT
11659934 AAAATCCTAA
Statistics
Matches: 132, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 132 1.00
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:11659934 original size:25 final size:25
Alignment explanation
Indices: 11659855--11659934 Score: 69
Period size: 25 Copynumber: 3.3 Consensus size: 25
11659845 ATTCGGCCTT
**
11659855 ATCACATATATGCATGTTCACATTC
1 ATCACATATATGCACATTCACATTC
* *
11659880 ATCACAT-T-GGC-CATTCGACCTT-
1 ATCACATATATGCACATTC-ACATTC
* *
11659902 ATCTCATATATACACATTCACATTC
1 ATCACATATATGCACATTCACATTC
11659927 ATCACATA
1 ATCACATA
11659935 AAATCCTAAA
Statistics
Matches: 41, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 9 0.22
23 7 0.17
24 6 0.15
25 19 0.46
ACGTcount: A:0.33, C:0.28, G:0.06, T:0.34
Consensus pattern (25 bp):
ATCACATATATGCACATTCACATTC
Found at i:11662610 original size:20 final size:22
Alignment explanation
Indices: 11662566--11662616 Score: 61
Period size: 20 Copynumber: 2.4 Consensus size: 22
11662556 AATAATTTGG
*
11662566 TTTATTATTTATTTTTGTTTGAT
1 TTTATTA-TTACTTTTGTTTGAT
11662589 TTTATTATTACTTTT-TTT-AT
1 TTTATTATTACTTTTGTTTGAT
*
11662609 TTTTTTAT
1 TTTATTAT
11662617 GGTTGTGGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 9 0.35
21 3 0.12
22 7 0.27
23 7 0.27
ACGTcount: A:0.18, C:0.02, G:0.04, T:0.76
Consensus pattern (22 bp):
TTTATTATTACTTTTGTTTGAT
Found at i:11663007 original size:16 final size:16
Alignment explanation
Indices: 11662986--11663018 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
11662976 GATAATCTAT
11662986 AAAACATGGAAAGAAC
1 AAAACATGGAAAGAAC
11663002 AAAACATGGAAAGAAC
1 AAAACATGGAAAGAAC
11663018 A
1 A
11663019 CACAAAGCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.64, C:0.12, G:0.18, T:0.06
Consensus pattern (16 bp):
AAAACATGGAAAGAAC
Found at i:11663379 original size:43 final size:43
Alignment explanation
Indices: 11663310--11663475 Score: 174
Period size: 43 Copynumber: 3.9 Consensus size: 43
11663300 AGCTCTTACA
* * * * *
11663310 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCAC-ATATCG
1 ATGCCAATGTCCCAGACAGGGTCTTACACGTAATCACAATA-CG
* * * * ** *
11663352 ATGCCATTGTCCTAGATAGGGTTTTACACAAAATCATAATACG
1 ATGCCAATGTCCCAGACAGGGTCTTACACGTAATCACAATACG
*
11663395 ATGCCAATGTCCCAGACAGGGTCTTACACGTAATCACAATACA
1 ATGCCAATGTCCCAGACAGGGTCTTACACGTAATCACAATACG
* *
11663438 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACA
1 ATGCCAATGTCCCAGACAGGGTCTTACACGTAATCACA
11663476 TCTCGATAAC
Statistics
Matches: 102, Mismatches: 20, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
42 5 0.05
43 94 0.92
44 3 0.03
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.28
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACAGGGTCTTACACGTAATCACAATACG
Found at i:11670915 original size:16 final size:16
Alignment explanation
Indices: 11670896--11670926 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
11670886 CTTCTTCACT
11670896 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
11670912 TACTTACTTACTTAA
1 TACTCACTTACTTAA
11670927 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:11670932 original size:20 final size:20
Alignment explanation
Indices: 11670893--11670932 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
11670883 AAACTTCTTC
* *
11670893 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
11670913 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
11670933 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:11671042 original size:23 final size:24
Alignment explanation
Indices: 11671004--11671048 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
11670994 TTTGCTCTTC
*
11671004 TAGCATGAACTTGTCTTACCTTTT
1 TAGCATGAACTCGTCTTACCTTTT
11671028 TAGCAT-AACTCGTCTTACCTT
1 TAGCATGAACTCGTCTTACCTT
11671049 ACCTTACCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.42
Consensus pattern (24 bp):
TAGCATGAACTCGTCTTACCTTTT
Found at i:11673280 original size:40 final size:40
Alignment explanation
Indices: 11673229--11673732 Score: 832
Period size: 40 Copynumber: 12.6 Consensus size: 40
11673219 CATTTGAATG
11673229 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
11673269 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
11673309 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
11673349 ATATCCGGG-TAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
11673388 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* * *
11673428 ATATCCGAGTTAAGACCCGAAGGCATTTGTGCGAAGTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
11673468 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
11673508 ATATCCGGGCTAAGACCTGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
11673548 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAACTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* * *
11673588 ATTTCCGGGCTAAGACCCGACGGCGTTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
11673628 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAA-TTGAT
* * *
11673668 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
11673708 ATACCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
11673733 ATTGAGCTTG
Statistics
Matches: 435, Mismatches: 26, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
39 41 0.09
40 393 0.90
41 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
Found at i:11680858 original size:40 final size:40
Alignment explanation
Indices: 11680807--11681389 Score: 992
Period size: 40 Copynumber: 14.6 Consensus size: 40
11680797 CATTTGAATG
11680807 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
11680847 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
11680887 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
11680927 ATATCCGGGTTAAGACCCGAAGGCATTTGTGC-AATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
11680966 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
11681006 ATATCC-GGTTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
**
11681045 ATATCCGGGCTAAGACAAGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
11681085 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
11681125 ATATCCGGGCTAAGACCTGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
11681165 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
11681205 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAACTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
11681245 ATATCCGGGCTAAGACCCGACGGCGTTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
11681285 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAA-TTGAT
* * *
11681325 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
11681365 ATACCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
11681390 ATTGAGCTTG
Statistics
Matches: 514, Mismatches: 25, Indels: 8
0.94 0.05 0.01
Matches are distributed among these distances:
39 78 0.15
40 435 0.85
41 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
Found at i:11682927 original size:54 final size:53
Alignment explanation
Indices: 11682793--11682995 Score: 214
Period size: 54 Copynumber: 3.8 Consensus size: 53
11682783 ATCCTTTTGA
* *
11682793 AACTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATG
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
* * * *
11682846 AACTCACCAATGCCATGCCTTGGCATGGTCTTATATGG-A-CCTTTGCCTTATGG
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-G
* * * *
11682899 TAACTTATCAATGCGATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-G
1 -AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
* * *
11682952 AAACCTTACCAATTGTCATGCCTTGGCATGGTCTTACATGGTAT
1 -AA-CTTACCAA-TGCCATGTCTTGACATGGTCTTACATGGTAT
11682996 TCTTAAACCT
Statistics
Matches: 121, Mismatches: 22, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
51 2 0.02
52 10 0.08
53 36 0.30
54 38 0.31
55 33 0.27
56 2 0.02
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.35
Consensus pattern (53 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
Found at i:11682929 original size:107 final size:109
Alignment explanation
Indices: 11682793--11682992 Score: 289
Period size: 107 Copynumber: 1.9 Consensus size: 109
11682783 ATCCTTTTGA
* *
11682793 AACTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
*
11682856 -TGCCATGCCTTGGCATGGTCTTATATGGACCTTTGCCTTATGGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGACCTTTGCCTTATGGT
* * * * *
11682900 AACTTATCAATGCGATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
*
11682965 TGTCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
11682993 TATTCTTAAA
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
106 1 0.01
107 47 0.58
108 7 0.09
109 26 0.32
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.35
Consensus pattern (109 bp):
AACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGACCTTTGCCTTATGGT
Found at i:11685301 original size:16 final size:16
Alignment explanation
Indices: 11685280--11685312 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
11685270 GATAATCTAT
11685280 AAAACATGGAAAGAAC
1 AAAACATGGAAAGAAC
11685296 AAAACATGGAAAGAAC
1 AAAACATGGAAAGAAC
11685312 A
1 A
11685313 CACAAAGTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.64, C:0.12, G:0.18, T:0.06
Consensus pattern (16 bp):
AAAACATGGAAAGAAC
Found at i:11685619 original size:43 final size:43
Alignment explanation
Indices: 11685550--11685715 Score: 192
Period size: 43 Copynumber: 3.9 Consensus size: 43
11685540 AGCTCTTACA
* * * *
11685550 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCAC-ATATCG
1 ATGCCAATGTCCCAGATAGGGTCTTACACGTAATCACAATA-CG
* * * ** *
11685592 ATGACATTGTCCCAGACAGGGTCTTACACAAAATCATAATACG
1 ATGCCAATGTCCCAGATAGGGTCTTACACGTAATCACAATACG
*
11685635 ATGCCAATGTCCCAGATAGGGTCTTACACGTAATCACAATACA
1 ATGCCAATGTCCCAGATAGGGTCTTACACGTAATCACAATACG
* *
11685678 ATGCCAATGTCCCAGATATGGTCTTACATGTAATCACA
1 ATGCCAATGTCCCAGATAGGGTCTTACACGTAATCACA
11685716 TCTTGATAAC
Statistics
Matches: 103, Mismatches: 19, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
42 4 0.04
43 96 0.93
44 3 0.03
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAGATAGGGTCTTACACGTAATCACAATACG
Found at i:11703611 original size:39 final size:39
Alignment explanation
Indices: 11703505--11703879 Score: 643
Period size: 39 Copynumber: 9.6 Consensus size: 39
11703495 CATTTGAATG
11703505 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGG-TAAGACCCGAAGGCATTTGTGCGAATTGAT
11703545 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGG-TAAGACCCGAAGGCATTTGTGCGAATTGAT
*
11703585 ATATCCGGGTTAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
11703624 ATATCCGGGTTAAGACCCGAAGGCATTTGTGTGAATTGAT
1 ATATCCGGG-TAAGACCCGAAGGCATTTGTGCGAATTGAT
11703664 ATATCCGGGTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGTAAGACCCGAAGGCATTTGTGCGAATTGAT
11703703 ATATCC-GGTAAGA-CCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGTAAGACCCGAAGGCATTTGTGCGAATTGAT
11703740 ATATCCGGGCTAAGA-CCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGG-TAAGACCCGAAGGCATTTGTGCGAATTGAT
11703779 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGG-TAAGACCCGAAGGCATTTGTGCGAATTGAT
11703819 ATATCCGGGTAAGA-CCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
11703857 ATATCCGGGAAAGA-CCGAAGGCA
1 ATATCCGGGTAAGACCCGAAGGCA
11703880 ATATATCGGA
Statistics
Matches: 326, Mismatches: 5, Indels: 10
0.96 0.01 0.03
Matches are distributed among these distances:
37 30 0.09
38 55 0.17
39 122 0.37
40 119 0.37
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (39 bp):
ATATCCGGGTAAGACCCGAAGGCATTTGTGCGAATTGAT
Found at i:11703638 original size:79 final size:78
Alignment explanation
Indices: 11703505--11703879 Score: 643
Period size: 79 Copynumber: 4.8 Consensus size: 78
11703495 CATTTGAATG
11703505 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGG-TAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGG-TAAGACCCGAAGGCA
11703570 TTTGTGCGAATTGAT
64 TTTGTGCGAATTGAT
*
11703585 ATATCCGGGTTAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGTTAAGACCCGAAGGCAT
1 ATATCCGGGTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGG-TAAGACCCGAAGGCAT
*
11703650 TTGTGTGAATTGAT
65 TTGTGCGAATTGAT
11703664 ATATCCGGGTAAGACCCGAAGGCATTTGTGCGAATTGATATATCC-GGTAAGA-CCGAAGGCATT
1 ATATCCGGGTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGTAAGACCCGAAGGCATT
11703727 TGTGCGAATTGAT
66 TGTGCGAATTGAT
11703740 ATATCCGGGCTAAGA-CCGAAGGCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGG-TAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGG-TAAGACCCGAAGGCA
11703804 TTTGTGCGAATTGAT
64 TTTGTGCGAATTGAT
*
11703819 ATATCCGGGTAAGA-CCGAAGGCATTTGTGCGAATTGATATATCCGGGAAAGA-CCGAAGGCA
1 ATATCCGGGTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGTAAGACCCGAAGGCA
11703880 ATATATCGGA
Statistics
Matches: 285, Mismatches: 6, Indels: 12
0.94 0.02 0.04
Matches are distributed among these distances:
76 71 0.25
77 16 0.06
78 45 0.16
79 144 0.51
80 9 0.03
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (78 bp):
ATATCCGGGTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGTAAGACCCGAAGGCATT
TGTGCGAATTGAT
Found at i:11703956 original size:101 final size:103
Alignment explanation
Indices: 11703789--11703984 Score: 310
Period size: 101 Copynumber: 1.9 Consensus size: 103
11703779 ATATCCGGGC
*
11703789 TAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGTAAGACCGAAGGCATTTGTGCGAATT
1 TAAGACCCGAAGGCATTTGTGCGAACTGATATATCCGGGTAAGACCGAAGGCATTTGTGCGAATT
11703854 GATATATCCGGG-AAAGA-CCGAAGGCAATATATCGGA
66 GATATATCCGGGCAAAGACCCGAAGGCAATATATCGGA
* *
11703890 TAAGA-CCGAAGGCATTTGT-CGAACTGATATATCCGGGCTAAGACCCGACGGCGTTTGTGCGAA
1 TAAGACCCGAAGGCATTTGTGCGAACTGATATATCCGGG-TAAGA-CCGAAGGCATTTGTGCGAA
*
11703953 TTGATATATCCGGGCTAAGACCCGAAGGCAAT
64 TTGATATATCCGGGCAAAGACCCGAAGGCAAT
11703985 TGTGCAAGTT
Statistics
Matches: 87, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
99 17 0.20
100 19 0.22
101 36 0.41
102 4 0.05
103 11 0.13
ACGTcount: A:0.31, C:0.19, G:0.28, T:0.22
Consensus pattern (103 bp):
TAAGACCCGAAGGCATTTGTGCGAACTGATATATCCGGGTAAGACCGAAGGCATTTGTGCGAATT
GATATATCCGGGCAAAGACCCGAAGGCAATATATCGGA
Found at i:11704001 original size:179 final size:182
Alignment explanation
Indices: 11703701--11704063 Score: 569
Period size: 179 Copynumber: 2.0 Consensus size: 182
11703691 GTGCGAATTG
*
11703701 ATATATCCGGTAAGACCGAAGGCATTTGTGCGAATTGATATATCCGGGCTAAGACCGAAGGCATT
1 ATATATCCGGTAAGACCGAAGGCATTTGTGCGAACTGATATATCCGGGCTAAGACCGAAGGCATT
*
11703766 TGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGG-TA
66 TGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAATTGATATATCCGGGCTA
* *
11703830 AGA-CCGAAGGCATTTGTGCGAATTGATATATCCGGG-AAAGA-CCGAAGGCA
131 AGACCCGAAGGCATTCGTGCG-ATTGATATACCCGGGTAAAGACCCGAAGGCA
* *
11703880 ATATAT-CGGATAAGACCGAAGGCATTTGT-CGAACTGATATATCCGGGCTAAGACCCGACGGCG
1 ATATATCCGG-TAAGACCGAAGGCATTTGTGCGAACTGATATATCCGGGCTAAGA-CCGAAGGCA
11703943 TTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTGATATATCCGGG
64 TTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAA-TTGATATATCCGGG
* *
11704007 CTAAGACCCGAAGGCATTCGTGCGATTGCTATACCCGGGTTAAGACCCGAAGGCA
128 CTAAGACCCGAAGGCATTCGTGCGATTGATATACCCGGGTAAAGACCCGAAGGCA
11704062 AT
1 AT
11704064 TGAGCTTGTG
Statistics
Matches: 169, Mismatches: 8, Indels: 11
0.90 0.04 0.06
Matches are distributed among these distances:
178 28 0.17
179 92 0.54
180 18 0.11
181 20 0.12
182 11 0.07
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (182 bp):
ATATATCCGGTAAGACCGAAGGCATTTGTGCGAACTGATATATCCGGGCTAAGACCGAAGGCATT
TGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAATTGATATATCCGGGCTA
AGACCCGAAGGCATTCGTGCGATTGATATACCCGGGTAAAGACCCGAAGGCA
Found at i:11704056 original size:39 final size:40
Alignment explanation
Indices: 11703890--11704061 Score: 235
Period size: 40 Copynumber: 4.4 Consensus size: 40
11703880 ATATATCGGA
*
11703890 TAAGA-CCGAAGGCATTTGT-CGAACTGATATATCCGGGC
1 TAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGC
* *
11703928 TAAGACCCGACGGCGTTTGTGCGAATTGATATATCCGGGC
1 TAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGC
*
11703968 TAAGACCCGAAGGCAATTGTGC-AAGTTGATATATCCGGGC
1 TAAGACCCGAAGGCATTTGTGCGAA-TTGATATATCCGGGC
* * * *
11704008 TAAGACCCGAAGGCATTCGTGCG-ATTGCTATACCCGGGT
1 TAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGC
11704047 TAAGACCCGAAGGCA
1 TAAGACCCGAAGGCA
11704062 ATTGAGCTTG
Statistics
Matches: 119, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
38 5 0.04
39 41 0.34
40 73 0.61
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.22
Consensus pattern (40 bp):
TAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGC
Found at i:11704060 original size:79 final size:79
Alignment explanation
Indices: 11703890--11704065 Score: 241
Period size: 79 Copynumber: 2.2 Consensus size: 79
11703880 ATATATCGGA
* * * *
11703890 TAAGA-CCGAAGGCATTTGTCGAACTGATATATCCGGGCTAAGACCCGACGGCGTTTGTGCGAAT
1 TAAGACCCGAAGGCAATTGTCGAACTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAAT
*
11703954 TGATATATCCGGGC
66 TGATATACCCGGGC
*
11703968 TAAGACCCGAAGGCAATTGT-GCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCG-
1 TAAGACCCGAAGGCAATTGTCG-AA-CTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA
* *
11704031 ATTGCTATACCCGGGT
64 ATTGATATACCCGGGC
11704047 TAAGACCCGAAGGCAATTG
1 TAAGACCCGAAGGCAATTG
11704066 AGCTTGTGGT
Statistics
Matches: 87, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
78 6 0.07
79 47 0.54
80 34 0.39
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.23
Consensus pattern (79 bp):
TAAGACCCGAAGGCAATTGTCGAACTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAAT
TGATATACCCGGGC
Found at i:11704081 original size:79 final size:80
Alignment explanation
Indices: 11703915--11704088 Score: 235
Period size: 79 Copynumber: 2.2 Consensus size: 80
11703905 TTGTCGAACT
* * * *
11703915 GATATATCCGGGCTAAGACCCGACGGCGTTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAG
1 GATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAATTGATATACCCGGGCTAAGACCCGAAG
* *
11703980 GCAATTGTGCAAGTT
66 GCAATTGAGCAAGTG
* *
11703995 GATATATCCGGGCTAAGACCCGAAGGCATTCGTGCG-ATTGCTATACCCGGGTTAAGACCCGAAG
1 GATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAATTGATATACCCGGGCTAAGACCCGAAG
**
11704059 GCAATTGAGCTTGTG
66 GCAATTGAGCAAGTG
*
11704074 GTTATATCC-GGCTAA
1 GATATATCCGGGCTAA
11704089 ATTCCGAAGA
Statistics
Matches: 83, Mismatches: 11, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
78 6 0.07
79 44 0.53
80 33 0.40
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
GATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAATTGATATACCCGGGCTAAGACCCGAAG
GCAATTGAGCAAGTG
Found at i:11705545 original size:53 final size:54
Alignment explanation
Indices: 11705421--11705668 Score: 224
Period size: 55 Copynumber: 4.7 Consensus size: 54
11705411 GGGTGTTACA
* * * * *
11705421 ACCATTGCCATGACTTGTCATGGTGTTACGTGGTATCC-T---TT-TGAAACTT
1 ACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAACTT
* * * *
11705470 ACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATG-AACTC
1 ACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAACTT
* * * *
11705523 ACCAATGCCATGCCTTGGCATGGTCTTATATGGGA-CCTTTGCCTTATGGTAACTT
1 ACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-GAAACTT
* * * * *
11705578 ATCAATGCGATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAACCTT
1 ACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA-CTT
* *
11705632 ACCAATTGTCATGCCTTGGCATGGTCTTACATGGTAT
1 ACCAA-TGCCATGCCTTGACATGGTCTTACATGGTAT
11705669 TCTTAAACCT
Statistics
Matches: 159, Mismatches: 29, Indels: 16
0.78 0.14 0.08
Matches are distributed among these distances:
49 33 0.21
50 1 0.01
52 2 0.01
53 47 0.30
54 10 0.06
55 64 0.40
56 2 0.01
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.36
Consensus pattern (54 bp):
ACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAACTT
Found at i:11705609 original size:108 final size:110
Alignment explanation
Indices: 11705465--11705665 Score: 291
Period size: 108 Copynumber: 1.8 Consensus size: 110
11705455 ATCCTTTTGA
* *
11705465 AACTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
*
11705528 -TGCCATGCCTTGGCATGGTCTTATATGGGACCTTTGCCTTATGGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATGGT
* * * * *
11705573 AACTTATCAATGCGATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
*
11705638 TGTCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
11705666 TATTCTTAAA
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 1 0.01
108 47 0.58
109 7 0.09
110 26 0.32
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATGGT
Found at i:11707977 original size:16 final size:16
Alignment explanation
Indices: 11707956--11707988 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
11707946 GATAATCTAT
11707956 AAAACATGGAAAGAAC
1 AAAACATGGAAAGAAC
11707972 AAAACATGGAAAGAAC
1 AAAACATGGAAAGAAC
11707988 A
1 A
11707989 CACAAAGTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.64, C:0.12, G:0.18, T:0.06
Consensus pattern (16 bp):
AAAACATGGAAAGAAC
Found at i:11708295 original size:43 final size:43
Alignment explanation
Indices: 11708226--11708391 Score: 192
Period size: 43 Copynumber: 3.9 Consensus size: 43
11708216 AGCTCTTACA
* * * *
11708226 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCAC-ATATCG
1 ATGCCAATGTCCCAGATAGGGTCTTACACGTAATCACAATA-CG
* * * ** *
11708268 ATGACATTGTCCCAGACAGGGTCTTACACAAAATCATAATACG
1 ATGCCAATGTCCCAGATAGGGTCTTACACGTAATCACAATACG
*
11708311 ATGCCAATGTCCCAGATAGGGTCTTACACGTAATCACAATACA
1 ATGCCAATGTCCCAGATAGGGTCTTACACGTAATCACAATACG
* *
11708354 ATGCCAATGTCCCAGATATGGTCTTACATGTAATCACA
1 ATGCCAATGTCCCAGATAGGGTCTTACACGTAATCACA
11708392 TCTTGATAAC
Statistics
Matches: 103, Mismatches: 19, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
42 4 0.04
43 96 0.93
44 3 0.03
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAGATAGGGTCTTACACGTAATCACAATACG
Found at i:11715659 original size:26 final size:26
Alignment explanation
Indices: 11715622--11715705 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
11715612 TGATACAAAT
* *
11715622 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
11715648 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
11715674 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
11715700 TGATAA
1 TGATAA
11715706 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:11721182 original size:161 final size:164
Alignment explanation
Indices: 11720956--11721445 Score: 498
Period size: 161 Copynumber: 2.9 Consensus size: 164
11720946 ACATGTATAG
* * * *
11720956 TAAAAG-ATATATAATTTGAAAATCAATTTACATATTAA-AATAAATACAAAATAAGT-ATTTAT
1 TAAAAGAATATATAATTCGAAAACCATTTTAC---TTAATAATAAAGACAAAATAA-TCATTTAT
* * * *
11721018 AATAAAATACTGATTTAGGTATGGCAAAAAGTGTATGATTTCAATAACCAAAGAAACATAAGCAT
62 AATAAAATA-TGGTTTAGGTATGGCAAAAAGTGTATGATTCCGATAACCAAAGAAA-ATAAGTAT
* *
11721083 TTATAAAACACGATGGAGTGTAAA-TTT-AG-GC-ATCGC
125 TTATAAAACACGATGGAATATAAACTTTAAGAGCGATCGC
* *
11721119 TAAAAG-GTATATAATTCGGAAACCATTTTACTTAATAATAAAGACAAAATAATCATTTATAATA
1 TAAAAGAATATATAATTCGAAAACCATTTTACTTAATAATAAAGACAAAATAATCATTTATAATA
* * *
11721183 AAATATAGGTTTAAGTAT--AATAAAAGATGTATGATTCCGATAACGAAAGTAAAATAAGTATTT
66 AAATAT-GGTTTAGGTATGGCA-AAAAG-TGTATGATTCCGATAACCAAAG-AAAATAAGTATTT
* *
11721246 ATAAAACACGATGGAATATAAACTTTAAGTATCGATCGT
127 ATAAAACACGATGGAATATAAACTTTAAG-AGCGATCGC
* * *
11721285 TAAAAGATATATATAATTCGAAAACCGTTTTACTTATTAA-AATAGAAACAAAATAAGCATTTAT
1 TAAAAGA-ATATATAATTCGAAAACCATTTTACTTAATAATAA-AG--ACAAAATAATCATTTAT
* ** *
11721349 AATAAAATAGAGGTTTAGGTATGGCGGAAGGTGTATGATTCCGATAACCAAAGAAAAATAAGTAT
62 AATAAAATA-TGGTTTAGGTATGGCAAAAAGTGTATGATTCCGATAACCAAAG-AAAATAAGTAT
* * *
11721414 TTATATAACACTCATAGAATATAAACTTTAAG
125 TTATAAAACAC-GATGGAATATAAACTTTAAG
11721446 TATCGTTAAG
Statistics
Matches: 274, Mismatches: 33, Indels: 32
0.81 0.10 0.09
Matches are distributed among these distances:
159 1 0.00
160 11 0.04
161 87 0.32
162 6 0.02
163 28 0.10
165 1 0.00
166 10 0.04
167 2 0.01
168 30 0.11
170 77 0.28
171 21 0.08
ACGTcount: A:0.47, C:0.09, G:0.13, T:0.30
Consensus pattern (164 bp):
TAAAAGAATATATAATTCGAAAACCATTTTACTTAATAATAAAGACAAAATAATCATTTATAATA
AAATATGGTTTAGGTATGGCAAAAAGTGTATGATTCCGATAACCAAAGAAAATAAGTATTTATAA
AACACGATGGAATATAAACTTTAAGAGCGATCGC
Found at i:11721827 original size:164 final size:165
Alignment explanation
Indices: 11721588--11721975 Score: 474
Period size: 165 Copynumber: 2.4 Consensus size: 165
11721578 CCATGAAACA
* *** * * *
11721588 TATCGTTAAAAGATATATAATTCAAAAATTGTTTGTACTTATTAAAACAAAAATAAATTACGCAT
1 TATCGTTAAAAGATATATAATTCGAAAACCATTT-TACTTATTAAAACAAAAACAAAATAAGCAT
* * * * * *
11721653 TTATAATAAAATAGAGGTATAGGTATGGTGAAAGGCGTATGGTTCTGATAACCAAAGCAAAATAA
65 TTATAATAAAATAGAGGTATAGATATAGTAAAAGGCATATGATTCGGATAACCAAAGCAAAATAA
* *
11721718 ACATTTATAGT-ACAC-AATGAAATATAAACTTTAAG
130 ACAATTATA-TAACACTAATAAAATATAAACTTTAAG
* *
11721753 TATCGTTAAAAGATTTATAATTCGAAAACCATTTTACTTACTAAAACAAAAACAAAATAAGCATT
1 TATCGTTAAAAGATATATAATTCGAAAACCATTTTACTTATTAAAACAAAAACAAAATAAGCATT
* * *
11721818 TATAATAAAATAGAGGTTTAGATATAGTAAAAGGCATATGATTCGGATAATCGAAGCAAAATAAA
66 TATAATAAAATAGAGGTATAGATATAGTAAAAGGCATATGATTCGGATAACCAAAGCAAAATAAA
*
11721883 CAATTATATAACACTCATAAAATATAAACTTTAAG
131 CAATTATATAACACTAATAAAATATAAACTTTAAG
* * * ** * * **
11721918 CATAGTTGAAAGATGGATAATTTGAAAACCAATTTAGGTATTAAAACAAAAACAAAAT
1 TATCGTTAAAAGATATATAATTCGAAAACCATTTTACTTATTAAAACAAAAACAAAAT
11721976 GATTACTTTG
Statistics
Matches: 190, Mismatches: 31, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
163 1 0.01
164 94 0.49
165 95 0.50
ACGTcount: A:0.48, C:0.10, G:0.12, T:0.29
Consensus pattern (165 bp):
TATCGTTAAAAGATATATAATTCGAAAACCATTTTACTTATTAAAACAAAAACAAAATAAGCATT
TATAATAAAATAGAGGTATAGATATAGTAAAAGGCATATGATTCGGATAACCAAAGCAAAATAAA
CAATTATATAACACTAATAAAATATAAACTTTAAG
Found at i:11721970 original size:165 final size:164
Alignment explanation
Indices: 11721627--11721975 Score: 448
Period size: 164 Copynumber: 2.1 Consensus size: 164
11721617 TGTTTGTACT
* * * * * * *
11721627 TATTAAAACAAAAATAAATTACGCATTTATAATAAAATAGAGGTATAGGTATGGTGAAAGGCGTA
1 TATTAAAACAAAAACAAAATAAGCATTTATAATAAAATAGAGGTATAGATATAGTAAAAGGCATA
* * * * * *
11721692 TGGTTCTGATAACCAAAGCAAAATAAACATTTATAGTACACAATGAAATATAAACTTTAAGTATC
66 TGATTCGGATAACCAAAGCAAAATAAACAATTATAGTACACAATAAAATATAAACTTTAAGCATA
** * *
11721757 GTTAAAAGATTTATAATTCGAAAACCATTTTACT
131 GTTAAAAGATGGATAATTCGAAAACCAATTTACG
* *
11721791 TACTAAAACAAAAACAAAATAAGCATTTATAATAAAATAGAGGTTTAGATATAGTAAAAGGCATA
1 TATTAAAACAAAAACAAAATAAGCATTTATAATAAAATAGAGGTATAGATATAGTAAAAGGCATA
* * *
11721856 TGATTCGGATAATCGAAGCAAAATAAACAATTATA-TAACACTCATAAAATATAAACTTTAAGCA
66 TGATTCGGATAACCAAAGCAAAATAAACAATTATAGT-ACAC-AATAAAATATAAACTTTAAGCA
* * *
11721920 TAGTTGAAAGATGGATAATTTGAAAACCAATTTAGG
129 TAGTTAAAAGATGGATAATTCGAAAACCAATTTACG
11721956 TATTAAAACAAAAACAAAAT
1 TATTAAAACAAAAACAAAAT
11721976 GATTACTTTG
Statistics
Matches: 157, Mismatches: 26, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
163 1 0.01
164 90 0.57
165 66 0.42
ACGTcount: A:0.49, C:0.10, G:0.13, T:0.28
Consensus pattern (164 bp):
TATTAAAACAAAAACAAAATAAGCATTTATAATAAAATAGAGGTATAGATATAGTAAAAGGCATA
TGATTCGGATAACCAAAGCAAAATAAACAATTATAGTACACAATAAAATATAAACTTTAAGCATA
GTTAAAAGATGGATAATTCGAAAACCAATTTACG
Found at i:11729644 original size:29 final size:30
Alignment explanation
Indices: 11729582--11729644 Score: 83
Period size: 29 Copynumber: 2.1 Consensus size: 30
11729572 TATTTACAAG
* * *
11729582 AATTGGATCAAATCAAAATTTTATGTATAA
1 AATTGCATAAAATCAAAAGTTTATGTATAA
*
11729612 AATTGCATAAAATC-AAAGTTTATGTATAT
1 AATTGCATAAAATCAAAAGTTTATGTATAA
11729641 AATT
1 AATT
11729645 TCACATTAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 17 0.59
30 12 0.41
ACGTcount: A:0.46, C:0.06, G:0.10, T:0.38
Consensus pattern (30 bp):
AATTGCATAAAATCAAAAGTTTATGTATAA
Found at i:11730471 original size:22 final size:20
Alignment explanation
Indices: 11730437--11730478 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 20
11730427 TCATTGTTGA
*
11730437 GAAATTGATGAATTGAGCTT
1 GAAATTGATGAATTAAGCTT
11730457 GAAATTGATAGGAATTAAGCTT
1 GAAATTGAT--GAATTAAGCTT
11730479 AGATTATGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 9 0.47
22 10 0.53
ACGTcount: A:0.38, C:0.05, G:0.24, T:0.33
Consensus pattern (20 bp):
GAAATTGATGAATTAAGCTT
Found at i:11736044 original size:13 final size:13
Alignment explanation
Indices: 11736023--11736052 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
11736013 AAAGGGTTTA
*
11736023 TAATTTTTTAATT
1 TAATATTTTAATT
11736036 TAATATTTTAATT
1 TAATATTTTAATT
11736049 TAAT
1 TAAT
11736053 TAAAAAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (13 bp):
TAATATTTTAATT
Found at i:11744412 original size:26 final size:26
Alignment explanation
Indices: 11744383--11744490 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
11744373 TGATACAAAT
11744383 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
11744409 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
11744435 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
11744461 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
11744487 TGAT
1 TGAT
11744491 GGGAATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:11750430 original size:39 final size:39
Alignment explanation
Indices: 11750383--11750464 Score: 139
Period size: 39 Copynumber: 2.1 Consensus size: 39
11750373 AATGTCTAAA
11750383 AGGCCTCGTGCC-GATGATAAGTTCAGGTTTATACCTAGC
1 AGGCCTCGTGCCAG-TGATAAGTTCAGGTTTATACCTAGC
*
11750422 AGGCCTCGTGCCAGTGATAAGTTTAGGTTTATACCTAGC
1 AGGCCTCGTGCCAGTGATAAGTTCAGGTTTATACCTAGC
11750461 AGGC
1 AGGC
11750465 TAATTGCCGG
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
39 40 0.98
40 1 0.02
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (39 bp):
AGGCCTCGTGCCAGTGATAAGTTCAGGTTTATACCTAGC
Found at i:11755602 original size:47 final size:47
Alignment explanation
Indices: 11755548--11755832 Score: 428
Period size: 47 Copynumber: 6.1 Consensus size: 47
11755538 TTAGGATTTT
** * *
11755548 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
11755595 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
11755642 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
11755689 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
11755736 ATGTGATGAATGTGAACATGCATATATGTGACAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * * *
11755783 ATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGCCGAACGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
11755830 ATG
1 ATG
11755833 CAAAACGTGT
Statistics
Matches: 220, Mismatches: 17, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
47 217 0.99
48 3 0.01
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:11755890 original size:46 final size:46
Alignment explanation
Indices: 11755808--11755896 Score: 115
Period size: 46 Copynumber: 1.9 Consensus size: 46
11755798 AAGTGTATAT
* *
11755808 ATGTGGTAAAGCCGAACGGCTAATGCAAAACGTGTATGAGATGGAC
1 ATGTGGTAAAGCCAAACGGCTAATGCAAAACATGTATGAGATGGAC
* ** * *
11755854 ATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATGTGGTAAAGCCAAACGGCTAATGCAAAACATGTATGAGATG
11755897 TGTATATATA
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 36 1.00
ACGTcount: A:0.35, C:0.11, G:0.30, T:0.24
Consensus pattern (46 bp):
ATGTGGTAAAGCCAAACGGCTAATGCAAAACATGTATGAGATGGAC
Found at i:11762083 original size:39 final size:39
Alignment explanation
Indices: 11762035--11762121 Score: 147
Period size: 39 Copynumber: 2.2 Consensus size: 39
11762025 GACTTAATGT
* *
11762035 CTAGTAGGCCTTGTGCCGGTGATAAGTTCAGGTTTATAC
1 CTAGCAGGCCTCGTGCCGGTGATAAGTTCAGGTTTATAC
*
11762074 CTAGCAGGCCTCGTGCCGGTGATAATTTCAGGTTTATAC
1 CTAGCAGGCCTCGTGCCGGTGATAAGTTCAGGTTTATAC
11762113 CTAGCAGGC
1 CTAGCAGGC
11762122 TAATTGCCGG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 45 1.00
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.30
Consensus pattern (39 bp):
CTAGCAGGCCTCGTGCCGGTGATAAGTTCAGGTTTATAC
Found at i:11762130 original size:39 final size:39
Alignment explanation
Indices: 11762035--11762134 Score: 139
Period size: 39 Copynumber: 2.6 Consensus size: 39
11762025 GACTTAATGT
* *
11762035 CTAGTAGGCCTTGTGCCGGTGATAAGTTCAGGTTTATAC
1 CTAGCAGGCCTAGTGCCGGTGATAAGTTCAGGTTTATAC
* *
11762074 CTAGCAGGCCTCGTGCCGGTGATAATTTCAGGTTTATAC
1 CTAGCAGGCCTAGTGCCGGTGATAAGTTCAGGTTTATAC
*
11762113 CTAGCAGG-CTAATTGCCGGTGA
1 CTAGCAGGCCT-AGTGCCGGTGA
11762135 AATAATAAAA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
38 2 0.04
39 53 0.96
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (39 bp):
CTAGCAGGCCTAGTGCCGGTGATAAGTTCAGGTTTATAC
Found at i:11764795 original size:22 final size:22
Alignment explanation
Indices: 11764741--11764785 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
11764731 ATCAACAGAA
* *
11764741 AGCAC-AAGGTGCTATACAAAG
1 AGCACGAATGTGCTAAACAAAG
11764762 AGCACGAATGTGCTAAACAAAG
1 AGCACGAATGTGCTAAACAAAG
11764784 AG
1 AG
11764786 TATTAATGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 5 0.24
22 16 0.76
ACGTcount: A:0.44, C:0.18, G:0.24, T:0.13
Consensus pattern (22 bp):
AGCACGAATGTGCTAAACAAAG
Found at i:11772482 original size:25 final size:25
Alignment explanation
Indices: 11772418--11772490 Score: 85
Period size: 25 Copynumber: 2.9 Consensus size: 25
11772408 GACACACCAC
*
11772418 AGCTTGCATGAGCTTCTCGTTATAT
1 AGCTTGCATGAGCTTCCCGTTATAT
* * *
11772443 AGCTCGGA-GTAGCTTCCCATTATAT
1 AGCTTGCATG-AGCTTCCCGTTATAT
*
11772468 AGCTTGCATGGGCTTCCCGTTAT
1 AGCTTGCATGAGCTTCCCGTTAT
11772491 TCAGCTCAGA
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
24 1 0.03
25 36 0.95
26 1 0.03
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (25 bp):
AGCTTGCATGAGCTTCCCGTTATAT
Found at i:11773931 original size:26 final size:26
Alignment explanation
Indices: 11773902--11774009 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
11773892 TGGTACAAAT
11773902 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
11773928 TGATAATAGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
11773954 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
11773980 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
11774006 TGAT
1 TGAT
11774010 GGGAATTTCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:11779339 original size:26 final size:26
Alignment explanation
Indices: 11779292--11779344 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11779282 TCAAACATGC
*
11779292 ATTTCGGTCAATTTAACCCTAGGGGT
1 ATTTCGGTCAATTTAACACTAGGGGT
*
11779318 ATTTCGGT-AATTTATCTACTAGGGGT
1 ATTTCGGTCAATTTAAC-ACTAGGGGT
11779344 A
1 A
11779345 AAATTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (26 bp):
ATTTCGGTCAATTTAACACTAGGGGT
Found at i:11782623 original size:13 final size:13
Alignment explanation
Indices: 11782604--11782634 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
11782594 ATTATTTTTT
11782604 AATTAAATTAAAA
1 AATTAAATTAAAA
*
11782617 TATTAAATTAAAA
1 AATTAAATTAAAA
11782630 AATTA
1 AATTA
11782635 TAAACCCTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (13 bp):
AATTAAATTAAAA
Found at i:11788096 original size:29 final size:30
Alignment explanation
Indices: 11788064--11788126 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
11788054 TTTAATGTGA
* *
11788064 AATTATATACAT-AAACTTTGATTTTATGC
1 AATTATATACATAAAACTTTGATTTGATCC
* *
11788093 AATTTTATACATAAAATTTTGATTTGATCC
1 AATTATATACATAAAACTTTGATTTGATCC
11788123 AATT
1 AATT
11788127 CTTGTAAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 11 0.38
30 18 0.62
ACGTcount: A:0.38, C:0.10, G:0.06, T:0.46
Consensus pattern (30 bp):
AATTATATACATAAAACTTTGATTTGATCC
Found at i:11795924 original size:164 final size:163
Alignment explanation
Indices: 11795727--11796742 Score: 527
Period size: 163 Copynumber: 6.3 Consensus size: 163
11795717 CAAAGTAATC
** * ** * *
11795727 ATTTTGTTTTTGTTTTAATACCTAAATTGGTTTTCAAATTATCCATCTTTCAACTATGCTTAAAG
1 ATTTTGTTTTTGTTTTAATAAGTAAAATGGTTTTCAAATTATAAATCTTTCAACGATACTTAAAG
* * * * *
11795792 TTTATATTTTATGAGTGTTA-TATAATTGTTTATTTTGCTTCGATTATCCGAATCATATGCCTTT
66 TTTATATTTCAT-AGTG-TACTATAAATGTTTATTTTGCTTCGATTATCAGAACCATACGCCTTT
* * * *
11795856 TACTATATCTAAACCTCTATTTATTATAAATGCTT
129 CACCATACCTAAACCTCTATTTATTATAAATGCGT
* * *
11795891 ATTTTGTTTTTGTTTTAGTAAGTAAAATGGTTTTCGAATTATAAATCTTTTAACGATACTTAAAG
1 ATTTTGTTTTTGTTTTAATAAGTAAAATGGTTTTCAAATTATAAATCTTTCAACGATACTTAAAG
* * *
11795956 TTTATATTTCATTGTGTACTATAAATGTTTATTTTGCTTTGGTTATCAGAACCATACGCCTTTCA
66 TTTATATTTCATAGTGTACTATAAATGTTTATTTTGCTTCGATTATCAGAACCATACGCCTTTCA
*
11796021 CCATACCTATACCTCTATTTATTATAAATGCGT
131 CCATACCTAAACCTCTATTTATTATAAATGCGT
* * *** ** * *
11796054 AATTTATTTTTGTTTTAATAAGTACAAACAATTTTTGAATTATATATCTTTTAACGATA--T---
1 ATTTTGTTTTTGTTTTAATAAGTA-AAATGGTTTTCAAATTATAAATCTTTCAACGATACTTAAA
* ** * * * * * * * *
11796114 GTTT-CA-TGGAT-GT-TA-TATAAATGCTTATTTTTCTTTGGTTATCGGAA-TATTCGTACACC
65 GTTTATATTTCATAGTGTACTATAAATGTTTATTTTGCTTCGATTATCAGAACCATACG--C-CT
*
11796173 TTCACTATACCTAAACCTC-------TAT--A----T
127 TTCACCATACCTAAACCTCTATTTATTATAAATGCGT
* *
11796197 ATTTTGTTTTTGTTTTAATAAGT-AAATAGGTTTTCAAATTAGATATCTCTT-AACGATACTTAA
1 ATTTTGTTTTTGTTTTAATAAGTAAAAT-GGTTTTCAAATTATAAATCT-TTCAACGATACTTAA
** * * * * * *
11796260 AGTTTATA-TTCTATGAGTGTTA-TATAAATACTTATTTTTCTTTGGTTATCGGAATCATACACC
64 AGTTTATATTTC-AT-AGTG-TACTATAAATGTTTATTTTGCTTCGATTATCAGAACCATACGCC
* * *
11796323 TTCCGCCATACCTAAACCTCTATTTTATTATAAATGCTT
126 TTTCACCATACCTAAACCTCTA-TTTATTATAAATGCGT
* * * * *
11796362 ATTTTGTTTCTATTTTAATAAGTAAAACGGTTTTCGAATTATATATATCTTTTAACGATCGATAC
1 ATTTTGTTTTTGTTTTAATAAGTAAAATGGTTTTCAAATTATA-A-ATC-TTT--C-AACGATAC
* * ** ** * * * *
11796427 TTAAAGTTTATATTCCATCGTGTTTTATAAATACTTATTTTACTTTCG-TTATCGGAATCATACA
60 TTAAAGTTTATATTTCATAGTGTACTATAAATGTTTATTTTGC-TTCGATTATCAGAACCATACG
* * ** * * **
11796491 TCTTTTATTATACTTAAACCTATATTTTATTATAAATGATT
124 CCTTTCACCATACCTAAACCTCTA-TTTATTATAAATGCGT
* * * * * * * * * * *
11796532 ATTTTG-TCTT-TATTATTAAGTAAAATGGTTTCCGAATTATATACCTTTTAGCGATGCCTAAA-
1 ATTTTGTTTTTGTTTTAATAAGTAAAATGGTTTTCAAATTATAAATCTTTCAACGATACTTAAAG
* * * * ** * * * * * * *
11796594 TTTACACTCCATCGTGTTTTATAAATGCTTATGTTT-CTTTGGTTAT-TGAAATCATACACTTTT
66 TTTATATTTCATAGTGTACTATAAATGTTTAT-TTTGCTTCGATTATCAG-AACCATACGCCTTT
** * ** * *
11796657 TGCCATACCTAAATCAGTATTTTATTATAAATACTT
129 CACCATACCTAAACCTCTA-TTTATTATAAATGCGT
* * * * * *
11796693 ATTTTGTATTTATTTTAATATGTAAATTGATTTTCAAATTATATATCTTT
1 ATTTTGTTTTTGTTTTAATAAGTAAAATGGTTTTCAAATTATAAATCTTT
11796743 TACTATACAT
Statistics
Matches: 683, Mismatches: 120, Indels: 99
0.76 0.13 0.11
Matches are distributed among these distances:
141 3 0.00
142 22 0.03
143 24 0.04
144 1 0.00
147 5 0.01
148 2 0.00
149 5 0.01
151 19 0.03
152 1 0.00
153 37 0.05
154 32 0.05
155 3 0.00
156 20 0.03
157 3 0.00
158 1 0.00
159 7 0.01
160 4 0.01
161 80 0.12
162 18 0.03
163 122 0.18
164 95 0.14
165 38 0.06
166 5 0.01
167 5 0.01
168 28 0.04
169 3 0.00
170 74 0.11
171 24 0.04
172 2 0.00
ACGTcount: A:0.30, C:0.13, G:0.10, T:0.47
Consensus pattern (163 bp):
ATTTTGTTTTTGTTTTAATAAGTAAAATGGTTTTCAAATTATAAATCTTTCAACGATACTTAAAG
TTTATATTTCATAGTGTACTATAAATGTTTATTTTGCTTCGATTATCAGAACCATACGCCTTTCA
CCATACCTAAACCTCTATTTATTATAAATGCGT
Found at i:11796488 original size:170 final size:165
Alignment explanation
Indices: 11796196--11796744 Score: 582
Period size: 161 Copynumber: 3.3 Consensus size: 165
11796186 AACCTCTATA
* * * * *
11796196 TATTTTGTTTTTGTTTTAATAAGT-AAATAGGTTTTC-AAATTAGATATCTCTTA-ACGATACTT
1 TATTTTGTTTCTATTTTAATAAGTAAAAT-GGTTTTCGAATTTATATATCTTTTAGACGATACTT
* * *
11796258 AAAGTTTATATTCTATGAGTGTTATATAAATACTTATTTTTCTTTGGTTATCGGAATCATACACC
65 AAAGTTTATATTCCAT-CGTGTTTTATAAATACTTA-TTTTCTTTGGTTATCGGAATCATACACC
** *
11796323 TTCCGCCATACCTAAACCTCTATTTTATTATAAATGCT
128 TTTTGCCATACCTAAACCTATATTTTATTATAAATGCT
*
11796361 TATTTTGTTTCTATTTTAATAAGTAAAACGGTTTTCGAATTATATATATCTTTTAACGATCGATA
1 TATTTTGTTTCTATTTTAATAAGTAAAATGGTTTTCGAATT-TATATATCTTTT-A-GA-CGATA
*
11796426 CTTAAAGTTTATATTCCATCGTGTTTTATAAATACTTATTTTACTTTCGTTATCGGAATCATACA
62 CTTAAAGTTTATATTCCATCGTGTTTTATAAATACTTATTTT-CTTTGGTTATCGGAATCATACA
* *** * *
11796491 TCTTTTATTATACTTAAACCTATATTTTATTATAAATGAT
126 CCTTTTGCCATACCTAAACCTATATTTTATTATAAATGCT
* * * * *
11796531 TATTTTG--TCT-TTATTATTAAGTAAAATGGTTTCCGAA-TTATATACCTTTTAG-CGATGCCT
1 TATTTTGTTTCTATT-TTAATAAGTAAAATGGTTTTCGAATTTATATATCTTTTAGACGATACTT
* * * * * *
11796591 AAA-TTTACACTCCATCGTGTTTTATAAATGCTTATGTTTCTTTGGTTATTGAAATCATACACTT
65 AAAGTTTATATTCCATCGTGTTTTATAAATACTTAT-TTTCTTTGGTTATCGGAATCATACACCT
* *
11796655 TTTGCCATACCTAAATC-AGTATTTTATTATAAATACT
129 TTTGCCATACCTAAACCTA-TATTTTATTATAAATGCT
* * * *
11796692 TATTTTGTATT-TATTTTAATATGTAAATTGATTTTC-AAATTATATATCTTTTA
1 TATTTTGT-TTCTATTTTAATAAGTAAAATGGTTTTCGAATTTATATATCTTTTA
11796745 CTATACATGT
Statistics
Matches: 322, Mismatches: 46, Indels: 34
0.80 0.11 0.08
Matches are distributed among these distances:
160 1 0.00
161 84 0.26
162 14 0.04
163 30 0.09
164 4 0.01
165 30 0.09
166 17 0.05
167 13 0.04
168 25 0.08
169 4 0.01
170 77 0.24
171 23 0.07
ACGTcount: A:0.31, C:0.13, G:0.09, T:0.48
Consensus pattern (165 bp):
TATTTTGTTTCTATTTTAATAAGTAAAATGGTTTTCGAATTTATATATCTTTTAGACGATACTTA
AAGTTTATATTCCATCGTGTTTTATAAATACTTATTTTCTTTGGTTATCGGAATCATACACCTTT
TGCCATACCTAAACCTATATTTTATTATAAATGCT
Found at i:11802030 original size:26 final size:26
Alignment explanation
Indices: 11801994--11802077 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
11801984 CATGAAATTC
11801994 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
11802020 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
11802046 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
11802072 TTATCA
1 TTATCA
11802078 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:11809651 original size:20 final size:20
Alignment explanation
Indices: 11809604--11809651 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
11809594 GCCACATCAA
* *
11809604 TATTCTTATCCTGAATTTTAG
1 TATT-TTATCCTAAATTTCAG
* *
11809625 GAGTTTATCCTAAATTTCAG
1 TATTTTATCCTAAATTTCAG
11809645 TATTTTA
1 TATTTTA
11809652 ATTTGGATTT
Statistics
Matches: 21, Mismatches: 6, Indels: 1
0.75 0.21 0.04
Matches are distributed among these distances:
20 19 0.90
21 2 0.10
ACGTcount: A:0.27, C:0.12, G:0.10, T:0.50
Consensus pattern (20 bp):
TATTTTATCCTAAATTTCAG
Found at i:11809707 original size:21 final size:20
Alignment explanation
Indices: 11809669--11809707 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
11809659 TTTGATTTTT
*
11809669 TTCAGGATAAAATCCTGAAA
1 TTCAGGATAAAATACTGAAA
11809689 TTCAGGATAAAAATACTGA
1 TTCAGGAT-AAAATACTGA
11809708 CGTGGCATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.46, C:0.13, G:0.15, T:0.26
Consensus pattern (20 bp):
TTCAGGATAAAATACTGAAA
Found at i:11812813 original size:38 final size:37
Alignment explanation
Indices: 11812771--11812942 Score: 177
Period size: 38 Copynumber: 4.6 Consensus size: 37
11812761 TAGAAATGAA
*
11812771 ATGATATTCGGGCTATGTACCTAGCAGGCTTTGTGTCG
1 ATGATATTCGGGCTATGTGCCTAGCAGGCTTTGTG-CG
* * *
11812809 ATGATATTCGGGCTATGTGCCTAGTAGGCTGTGTGCC
1 ATGATATTCGGGCTATGTGCCTAGCAGGCTTTGTGCG
* *
11812846 AGTGATATTCGAGCTATGTGCCTAGCAGCCTTT-TGCTG
1 A-TGATATTCGGGCTATGTGCCTAGCAGGCTTTGTGC-G
* * * * *
11812884 GTGATATTCGAGCTATATGCCTAACAGGCTATGTGTCG
1 ATGATATTCGGGCTATGTGCCTAGCAGGCTTTGTG-CG
*
11812922 GTGATATTCGGGCCT-TGTGCC
1 ATGATATTCGGG-CTATGTGCC
11812943 GATGTTATTC
Statistics
Matches: 113, Mismatches: 16, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
37 32 0.28
38 78 0.69
39 3 0.03
ACGTcount: A:0.18, C:0.20, G:0.29, T:0.33
Consensus pattern (37 bp):
ATGATATTCGGGCTATGTGCCTAGCAGGCTTTGTGCG
Found at i:11812941 original size:75 final size:76
Alignment explanation
Indices: 11812772--11812942 Score: 204
Period size: 75 Copynumber: 2.3 Consensus size: 76
11812762 AGAAATGAAA
* * * * **
11812772 TGATATTCGGGCTATGTACCTAGCAGGCTTTGTGTCGATGATATTCGGGCTATGTGCCTAGTAGG
1 TGATATTCGGGCTATGTGCCTAGCAGCCTTTGTGTCGATGATATTCGAGCTATATGCCTAACAGG
*
11812837 CTGTGTGCCAG
66 CTATGTGCCAG
* *
11812848 TGATATTCGAGCTATGTGCCTAGCAGCCTTT-TG-CTGGTGATATTCGAGCTATATGCCTAACAG
1 TGATATTCGGGCTATGTGCCTAGCAGCCTTTGTGTC-GATGATATTCGAGCTATATGCCTAACAG
* *
11812911 GCTATGTGTCGG
65 GCTATGTGCCAG
11812923 TGATATTCGGGCCT-TGTGCC
1 TGATATTCGGG-CTATGTGCC
11812943 GATGTTATTC
Statistics
Matches: 81, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
74 1 0.01
75 50 0.62
76 30 0.37
ACGTcount: A:0.18, C:0.20, G:0.29, T:0.33
Consensus pattern (76 bp):
TGATATTCGGGCTATGTGCCTAGCAGCCTTTGTGTCGATGATATTCGAGCTATATGCCTAACAGG
CTATGTGCCAG
Found at i:11812987 original size:38 final size:38
Alignment explanation
Indices: 11812936--11813023 Score: 115
Period size: 38 Copynumber: 2.3 Consensus size: 38
11812926 TATTCGGGCC
* * **
11812936 TTGTGCCGATGTTATTCGGGCTTCGGGCCTAGCAGGCT
1 TTGTGCCGATGTTATTCAGGCTCCAAGCCTAGCAGGCT
11812974 TTGTGCC-AGTGTTATTCAGGCTCCAAGCCTAGCAGGCT
1 TTGTGCCGA-TGTTATTCAGGCTCCAAGCCTAGCAGGCT
*
11813012 TTGTGCTGATGT
1 TTGTGCCGATGT
11813024 ATTGAAAATT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
37 1 0.02
38 41 0.95
39 1 0.02
ACGTcount: A:0.14, C:0.23, G:0.31, T:0.33
Consensus pattern (38 bp):
TTGTGCCGATGTTATTCAGGCTCCAAGCCTAGCAGGCT
Found at i:11816797 original size:26 final size:28
Alignment explanation
Indices: 11816761--11816831 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 28
11816751 TCTTAGCAAT
* *
11816761 TAATTAATATTTTTAAAAATCCTTTTAA
1 TAATTGATATTTTTAAAAATACTTTTAA
*
11816789 T-ATT-ATATTTTT-AAAATAGTTTTAA
1 TAATTGATATTTTTAAAAATACTTTTAA
*
11816814 TAATTGTTATTTTTAAAA
1 TAATTGATATTTTTAAAA
11816832 TATTTTTTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
25 12 0.32
26 11 0.30
27 10 0.27
28 4 0.11
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.54
Consensus pattern (28 bp):
TAATTGATATTTTTAAAAATACTTTTAA
Found at i:11816837 original size:26 final size:24
Alignment explanation
Indices: 11816767--11816837 Score: 79
Period size: 26 Copynumber: 2.8 Consensus size: 24
11816757 CAATTAATTA
*
11816767 ATATTTTTAAAAATCCTTTTAATATT
1 ATATTTTT-AAAAT-ATTTTAATATT
11816793 ATATTTTTAAAATAGTTTTAATAATT
1 ATATTTTTAAAATA-TTTTAAT-ATT
*
11816819 GTTATTTTTAAAATATTTT
1 -ATATTTTTAAAATATTTT
11816838 TTATCATTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
25 12 0.30
26 15 0.38
27 13 0.32
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (24 bp):
ATATTTTTAAAATATTTTAATATT
Found at i:11816853 original size:26 final size:27
Alignment explanation
Indices: 11816797--11816853 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
11816787 AATATTATAT
*
11816797 TTTTAAAATAGTTTTAATAATTGTTAT
1 TTTTAAAATAGTTTTAATAATTGTTAA
* * *
11816824 TTTTAAAATATTTTTTATCATT-TTAA
1 TTTTAAAATAGTTTTAATAATTGTTAA
11816850 TTTT
1 TTTT
11816854 TTTAAATTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 7 0.27
27 19 0.73
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.61
Consensus pattern (27 bp):
TTTTAAAATAGTTTTAATAATTGTTAA
Found at i:11816855 original size:28 final size:27
Alignment explanation
Indices: 11816768--11816838 Score: 83
Period size: 27 Copynumber: 2.7 Consensus size: 27
11816758 AATTAATTAA
** *
11816768 TATTTTTAAAAATCCTTTTAAT-ATT-A
1 TATTTTT-AAAATAGTTTTAATAATTGT
11816794 TATTTTTAAAATAGTTTTAATAATTGT
1 TATTTTTAAAATAGTTTTAATAATTGT
*
11816821 TATTTTTAAAATATTTTT
1 TATTTTTAAAATAGTTTT
11816839 TATCATTTTA
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
25 12 0.31
26 10 0.26
27 17 0.44
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.58
Consensus pattern (27 bp):
TATTTTTAAAATAGTTTTAATAATTGT
Found at i:11818352 original size:31 final size:29
Alignment explanation
Indices: 11818310--11818372 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 29
11818300 TGATTAATAG
11818310 TAAAAAATAATTTAA-AATTCAATTTTTTTAT
1 TAAAAAATAA-TTAATAA-TCAA-TTTTTTAT
*
11818341 TAAATAATAATTAATTAATCAATTTTTTAT
1 TAAAAAATAATTAA-TAATCAATTTTTTAT
11818371 TA
1 TA
11818373 GTAATGAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
30 14 0.48
31 13 0.45
32 2 0.07
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.49
Consensus pattern (29 bp):
TAAAAAATAATTAATAATCAATTTTTTAT
Found at i:11824006 original size:25 final size:25
Alignment explanation
Indices: 11823976--11824026 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
11823966 ACACAATTCA
11823976 AACAGAACAAAACCGAATAGAGCAG
1 AACAGAACAAAACCGAATAGAGCAG
**
11824001 AACAGAACAAAATGGAATAGAGCAG
1 AACAGAACAAAACCGAATAGAGCAG
11824026 A
1 A
11824027 GCAATGCTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.57, C:0.16, G:0.22, T:0.06
Consensus pattern (25 bp):
AACAGAACAAAACCGAATAGAGCAG
Found at i:11824748 original size:14 final size:15
Alignment explanation
Indices: 11824729--11824784 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
11824719 AATCTTCAAT
11824729 GATATG-CAATCTTA
1 GATATGACAATCTTA
11824743 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
11824760 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
11824778 GATATGA
1 GATATGA
11824785 TATACAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:11824755 original size:17 final size:17
Alignment explanation
Indices: 11824735--11824798 Score: 92
Period size: 17 Copynumber: 3.6 Consensus size: 17
11824725 CAATGATATG
11824735 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
*
11824752 CAATCTTAGATATGATTG
1 CAATCTTAGATATGA-TA
11824770 CAATCTTAGATATGATATA
1 CAATCTTAGATATG--ATA
11824789 CAATCTTAGA
1 CAATCTTAGA
11824799 AGATATGATT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
17 15 0.36
18 15 0.36
19 11 0.26
20 1 0.02
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.36
Consensus pattern (17 bp):
CAATCTTAGATATGATA
Found at i:11824773 original size:35 final size:37
Alignment explanation
Indices: 11824727--11824805 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
11824717 ATAATCTTCA
11824727 ATGATATGCAATCTTAGATATG-ATACAATCTTAGAT
1 ATGATATGCAATCTTAGATATGAATACAATCTTAGAT
11824763 ATGAT-TGCAATCTTAGATATGATATACAATCTTAGA-
1 ATGATATGCAATCTTAGATATGA-ATACAATCTTAGAT
11824799 A-GATATG
1 ATGATATG
11824806 ATTTTGTAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 19 0.47
36 8 0.20
37 13 0.32
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.35
Consensus pattern (37 bp):
ATGATATGCAATCTTAGATATGAATACAATCTTAGAT
Found at i:11825119 original size:12 final size:12
Alignment explanation
Indices: 11825104--11825137 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
11825094 TATTTTTAAT
11825104 TTATTATATATA
1 TTATTATATATA
11825116 TTATTATATATA
1 TTATTATATATA
11825128 TTATT-TATAT
1 TTATTATATAT
11825138 TTTCAAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 5 0.23
12 17 0.77
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
TTATTATATATA
Found at i:11825130 original size:21 final size:21
Alignment explanation
Indices: 11825105--11825213 Score: 67
Period size: 21 Copynumber: 5.5 Consensus size: 21
11825095 ATTTTTAATT
11825105 TATTATATATATTATTATATA
1 TATTATATATATTATTATATA
*
11825126 TATTATTTATATT-TTCA-A-A
1 TATTATATATATTATT-ATATA
* *
11825145 -ATT-TGTAAATTA-T-TATA
1 TATTATATATATTATTATATA
11825162 TATTATAT-T-TTAACTTATATA
1 TATTATATATATT-A-TTATATA
* *
11825183 TCTTATATAT-TTATTTATTTA
1 TATTATATATATTA-TTATATA
11825204 TATTATATAT
1 TATTATATAT
11825214 TATTTTAAAA
Statistics
Matches: 68, Mismatches: 9, Indels: 22
0.69 0.09 0.22
Matches are distributed among these distances:
16 1 0.01
17 10 0.15
18 7 0.10
19 3 0.04
20 4 0.06
21 40 0.59
22 3 0.04
ACGTcount: A:0.38, C:0.03, G:0.01, T:0.59
Consensus pattern (21 bp):
TATTATATATATTATTATATA
Found at i:11825167 original size:7 final size:7
Alignment explanation
Indices: 11825155--11825256 Score: 56
Period size: 7 Copynumber: 14.9 Consensus size: 7
11825145 ATTTGTAAAT
11825155 TATTATA
1 TATTATA
11825162 TATTATA
1 TATTATA
11825169 T-TT-TA
1 TATTATA
11825174 -ACTTATA
1 TA-TTATA
11825181 TATCTTATA
1 TA--TTATA
*
11825190 TATTTATT
1 TA-TTATA
11825198 TATT-TA
1 TATTATA
11825204 TATTATA
1 TATTATA
11825211 TATTAT-
1 TATTATA
*
11825217 T-TTAAA
1 TATTATA
* *
11825223 AACTTACA
1 TA-TTATA
*
11825231 T-TTTTA
1 TATTATA
11825237 TATTATA
1 TATTATA
11825244 TATTATA
1 TATTATA
*
11825251 AATTAT
1 TATTAT
11825257 TTCATTTATT
Statistics
Matches: 74, Mismatches: 11, Indels: 20
0.70 0.10 0.19
Matches are distributed among these distances:
5 5 0.07
6 14 0.19
7 36 0.49
8 11 0.15
9 8 0.11
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (7 bp):
TATTATA
Found at i:11825214 original size:21 final size:21
Alignment explanation
Indices: 11825154--11825218 Score: 71
Period size: 21 Copynumber: 3.1 Consensus size: 21
11825144 AATTTGTAAA
*
11825154 TTATTATATATTATAT-TTTAAC
1 TTATT-TATATTATATATTT-AT
* *
11825176 TTATATATCTTATATATTTAT
1 TTATTTATATTATATATTTAT
11825197 TTATTTATATTATATA-TTAT
1 TTATTTATATTATATATTTAT
11825217 TT
1 TT
11825219 TAAAAACTTA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
20 6 0.16
21 24 0.65
22 7 0.19
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (21 bp):
TTATTTATATTATATATTTAT
Found at i:11827190 original size:24 final size:21
Alignment explanation
Indices: 11827163--11827208 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 21
11827153 ATTCCATAAA
11827163 AATCATACAAAAGAATGAGAAATG
1 AATCAT-CAAAA-AATGA-AAATG
*
11827187 AATCATTAAAAAATGAAAATG
1 AATCATCAAAAAATGAAAATG
11827208 A
1 A
11827209 TAAAGAACCC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 6 0.29
22 5 0.24
23 4 0.19
24 6 0.29
ACGTcount: A:0.61, C:0.07, G:0.13, T:0.20
Consensus pattern (21 bp):
AATCATCAAAAAATGAAAATG
Found at i:11827635 original size:42 final size:42
Alignment explanation
Indices: 11827576--11827690 Score: 151
Period size: 42 Copynumber: 2.7 Consensus size: 42
11827566 TTACATGGCG
*
11827576 TGGACACACACTCATGTCCTTGCCCGTATGGCTCACACAGCC
1 TGGACACACGCTCATGTCCTTGCCCGTATGGCTCACACAGCC
* * *
11827618 TGGACACACGCTCATGTCCTTGCTCGTATGGCTCACACGGCT
1 TGGACACACGCTCATGTCCTTGCCCGTATGGCTCACACAGCC
* * *
11827660 TGGGCACATGCCCATGTCCCTTG-CCGTATGG
1 TGGACACACGCTCATGT-CCTTGCCCGTATGG
11827691 TTCTAAAGAG
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
42 59 0.92
43 5 0.08
ACGTcount: A:0.17, C:0.35, G:0.23, T:0.24
Consensus pattern (42 bp):
TGGACACACGCTCATGTCCTTGCCCGTATGGCTCACACAGCC
Found at i:11831194 original size:9 final size:9
Alignment explanation
Indices: 11831180--11831369 Score: 106
Period size: 9 Copynumber: 21.6 Consensus size: 9
11831170 TACATGATAT
11831180 CATAACTTA
1 CATAACTTA
11831189 CATAACTTA
1 CATAACTTA
11831198 CATAA--TA
1 CATAACTTA
* *
11831205 CATAAATATT
1 CATAACT-TA
* * *
11831215 TATCACATA
1 CATAACTTA
11831224 -ATAACTTA
1 CATAACTTA
*
11831232 TATAACTTA
1 CATAACTTA
11831241 CATAACTTA
1 CATAACTTA
*
11831250 CTTAACTTA
1 CATAACTTA
*
11831259 CGTAA--TA
1 CATAACTTA
*
11831266 CATAA-ATA
1 CATAACTTA
* ** *
11831274 TATTTCATA
1 CATAACTTA
*
11831283 TCATAATTTA
1 -CATAACTTA
11831293 CATAACTTA
1 CATAACTTA
*
11831302 CATACCTTA
1 CATAACTTA
*
11831311 CATAAATT-
1 CATAACTTA
* * *
11831319 TATATCATA
1 CATAACTTA
*
11831328 TCATAGCTTA
1 -CATAACTTA
11831338 CATAACTTA
1 CATAACTTA
*
11831347 CAAAACTTA
1 CATAACTTA
*
11831356 CTTAACTTA
1 CATAACTTA
11831365 CATAA
1 CATAA
11831370 TACATAAATA
Statistics
Matches: 136, Mismatches: 36, Indels: 18
0.72 0.19 0.09
Matches are distributed among these distances:
7 13 0.10
8 14 0.10
9 95 0.70
10 14 0.10
ACGTcount: A:0.44, C:0.18, G:0.01, T:0.37
Consensus pattern (9 bp):
CATAACTTA
Found at i:11831248 original size:61 final size:61
Alignment explanation
Indices: 11831180--11831315 Score: 193
Period size: 61 Copynumber: 2.2 Consensus size: 61
11831170 TACATGATAT
*
11831180 CATAACTTACATAACTTACATAATACATAAATAT-TTATCACATAATAACTTATATAACTTA
1 CATAACTTACATAACTTACATAATACATAAATATATT-TCACATAATAACTTACATAACTTA
* * * * *
11831241 CATAACTTACTTAACTTACGTAATACATAAATATATTTCATATCATAATTTACATAACTTA
1 CATAACTTACATAACTTACATAATACATAAATATATTTCACATAATAACTTACATAACTTA
*
11831302 CATACCTTACATAA
1 CATAACTTACATAA
11831316 ATTTATATCA
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
61 64 0.97
62 2 0.03
ACGTcount: A:0.45, C:0.18, G:0.01, T:0.37
Consensus pattern (61 bp):
CATAACTTACATAACTTACATAATACATAAATATATTTCACATAATAACTTACATAACTTA
Found at i:11831356 original size:45 final size:45
Alignment explanation
Indices: 11831241--11831356 Score: 137
Period size: 45 Copynumber: 2.6 Consensus size: 45
11831231 ATATAACTTA
* ** *
11831241 CATAACTTACTTAACTTACGTAA--TACATAAATATATTTCATAT
1 CATAACTTACATAACTTACAAAACTTACATAAATATATATCATAT
* * * *
11831284 CATAATTTACATAACTTACATACCTTACATAAATTTATATCATAT
1 CATAACTTACATAACTTACAAAACTTACATAAATATATATCATAT
*
11831329 CATAGCTTACATAACTTACAAAACTTAC
1 CATAACTTACATAACTTACAAAACTTAC
11831357 TTAACTTACA
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
43 19 0.31
45 42 0.69
ACGTcount: A:0.42, C:0.19, G:0.02, T:0.37
Consensus pattern (45 bp):
CATAACTTACATAACTTACAAAACTTACATAAATATATATCATAT
Found at i:11831356 original size:106 final size:104
Alignment explanation
Indices: 11831176--11831381 Score: 306
Period size: 106 Copynumber: 2.0 Consensus size: 104
11831166 TAAATACATG
*
11831176 ATATCATAACTTACATAACTTACATAATACATAAATATTTATCACATAATAACTTATATAACTTA
1 ATATCATAACTTACATAACTTACATAATACATAAATATTTATCACATAATAACTTACATAACTTA
* *
11831241 CATAACTTACTTAACTTACGTAATACATAAATATATTTC
66 CAAAACTTACTTAACTTACATAATACATAAATATATTTC
* * * * *
11831280 ATATCATAATTTACATAACTTACATACCTTACATAAAT-TTATATCATATCATAGCTTACATAAC
1 ATATCATAACTTACATAACTTACATA--ATACATAAATATT-TATCACATAATAACTTACATAAC
11831344 TTACAAAACTTACTTAACTTACATAATACATAAATATA
63 TTACAAAACTTACTTAACTTACATAATACATAAATATA
11831382 CACTTGAAAA
Statistics
Matches: 91, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
104 25 0.27
105 2 0.02
106 64 0.70
ACGTcount: A:0.45, C:0.17, G:0.01, T:0.37
Consensus pattern (104 bp):
ATATCATAACTTACATAACTTACATAATACATAAATATTTATCACATAATAACTTACATAACTTA
CAAAACTTACTTAACTTACATAATACATAAATATATTTC
Found at i:11837717 original size:73 final size:73
Alignment explanation
Indices: 11837581--11837793 Score: 392
Period size: 73 Copynumber: 2.9 Consensus size: 73
11837571 ATGAAGATAT
*
11837581 TTTTTACATGCATGTATATATACACATCCATCCTTTTTAAGTAT-CCCGAGTTTCATTTGTATTA
1 TTTTTACATGCATGTATATATACACATCCATCCTTTTTAAGTATCCCCGACTTTCATTTGTATTA
11837645 AAAGCTAA
66 AAAGCTAA
* *
11837653 TTTTTACAAGCATGTATATGTACACATCCATCCTTTTTAAGTATCCCCGACTTTCATTTGTATTA
1 TTTTTACATGCATGTATATATACACATCCATCCTTTTTAAGTATCCCCGACTTTCATTTGTATTA
11837718 AAAGCTAA
66 AAAGCTAA
11837726 TTTTTACATGCATGTATATATACACATCCATCCTTTTTAAGTATCCCCGACTTTCATTTGTATTA
1 TTTTTACATGCATGTATATATACACATCCATCCTTTTTAAGTATCCCCGACTTTCATTTGTATTA
11837791 AAA
66 AAA
11837794 ATAAACATTT
Statistics
Matches: 135, Mismatches: 5, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
72 42 0.31
73 93 0.69
ACGTcount: A:0.30, C:0.20, G:0.09, T:0.41
Consensus pattern (73 bp):
TTTTTACATGCATGTATATATACACATCCATCCTTTTTAAGTATCCCCGACTTTCATTTGTATTA
AAAGCTAA
Found at i:11841517 original size:130 final size:130
Alignment explanation
Indices: 11841222--11841843 Score: 651
Period size: 130 Copynumber: 4.8 Consensus size: 130
11841212 TATTATTGTG
* * * * * * *
11841222 AATCAAC-AACTTAG-GAAGGATTATTCATGATTGTAAATAAATAAACTTTGGCTGTTATCGTAA
1 AATCAACTAACTTAGAGAA-GATTATTCATGATAGTAAATCAATGAACTTAGGTTGTAATCATAA
*** * ** * * *
11841285 ATCAGTAAGCCTTAATAATATCAACTGTGATATTATATCA-CAAGTTGTTTGGAGTAGCAATAGT
65 ATCAACGAGCCTTAATAATATCAACTGTGATATTAAATCAGTGAGCTATTTGGAGTAGCGATAGT
11841349 A
130 A
* * * * * *** * *
11841350 AATCAACTAACTTAAAGATGATTATTCGTAATAGTAAATCAATGAATTTAGGCCATGATTATAAA
1 AATCAACTAACTTAGAGAAGATTATTCATGATAGTAAATCAATGAACTTAGGTTGTAATCATAAA
** * * * *
11841415 TCAACGAGCCTTAATAATATCTGCCGTGATATTAAA-CTAGTGAGTTGTTTGGAGTAGCGATAAT
66 TCAACGAGCCTTAATAATATCAACTGTGATATTAAATC-AGTGAGCTATTTGGAGTAGCGATAGT
11841479 A
130 A
* * * * * *
11841480 AATCAGCAAACTCAGAGAAGATTGTTCATGATAGTAAATCAATGAACTT-GAGTTGTGACCATAA
1 AATCAACTAACTTAGAGAAGATTATTCATGATAGTAAATCAATGAACTTAG-GTTGTAATCATAA
*** * * * * *
11841544 ATCAACGAGCCTTAATAATATCAACTGTGGCCTTAAATCAGTGAGCTATCTGAAATAACTATAGT
65 ATCAACGAGCCTTAATAATATCAACTGTGATATTAAATCAGTGAGCTATTTGGAGTAGCGATAGT
11841609 A
130 A
*
11841610 AATCAACTAACTTAGAGAATATTATTCATGATAGTAAATCAATGAACTTAGGTTGTAATCATAAA
1 AATCAACTAACTTAGAGAAGATTATTCATGATAGTAAATCAATGAACTTAGGTTGTAATCATAAA
* * * *** *
11841675 TCAACGTGCCTTAATAATATCAACTATTATATTAAATCAACAAGCTATTTGGAGTAGCGATACTA
66 TCAACGAGCCTTAATAATATCAACTGTGATATTAAATCAGTGAGCTATTTGGAGTAGCGATAGTA
* *
11841740 AATCAACTAACTTAGAGAAGATTGTTTATGATAGTAAATCAATGAACTTAGGTTGTAATCATAAA
1 AATCAACTAACTTAGAGAAGATTATTCATGATAGTAAATCAATGAACTTAGGTTGTAATCATAAA
** *
11841805 TCAGTGAGCCTTAATAATATCAACTATGATATTAAATCA
66 TCAACGAGCCTTAATAATATCAACTGTGATATTAAATCA
11841844 ACTATTGCAC
Statistics
Matches: 405, Mismatches: 82, Indels: 12
0.81 0.16 0.02
Matches are distributed among these distances:
128 8 0.02
129 71 0.18
130 324 0.80
131 2 0.00
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.32
Consensus pattern (130 bp):
AATCAACTAACTTAGAGAAGATTATTCATGATAGTAAATCAATGAACTTAGGTTGTAATCATAAA
TCAACGAGCCTTAATAATATCAACTGTGATATTAAATCAGTGAGCTATTTGGAGTAGCGATAGTA
Found at i:11850003 original size:3 final size:3
Alignment explanation
Indices: 11849995--11850083 Score: 50
Period size: 3 Copynumber: 32.3 Consensus size: 3
11849985 AGAATATTAG
* * * *
11849995 AAT AAT AAT AAT ATT TAC AAT AA- AA- AAG AA- AAT AAT AA- AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
11850039 -GT ACT AAT AAT -GT AAT AAT AAT AAT AAT AGT AAT AA- AAT -AT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
11850083 A
1 A
11850084 GTTCATATAA
Statistics
Matches: 66, Mismatches: 13, Indels: 14
0.71 0.14 0.15
Matches are distributed among these distances:
2 14 0.21
3 52 0.79
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:11850267 original size:17 final size:18
Alignment explanation
Indices: 11850232--11850274 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 18
11850222 AATAATGTAC
*
11850232 TAATAAT-GTGATAATAA
1 TAATAATAGTAATAATAA
11850249 TAATAATAGTAATAA-AA
1 TAATAATAGTAATAATAA
11850266 T-ATAATAGT
1 TAATAATAGT
11850275 TAACGTAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 8 0.33
17 10 0.42
18 6 0.25
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.35
Consensus pattern (18 bp):
TAATAATAGTAATAATAA
Found at i:11850474 original size:188 final size:188
Alignment explanation
Indices: 11850011--11850577 Score: 994
Period size: 188 Copynumber: 3.0 Consensus size: 188
11850001 AATAATATTT
11850011 ACAATAAAAAA-GAAAATAATAAAATAATGTACTAATAATGTAATAATAATAATAATAGTAATAA
1 ACAATAAAAAAGGAAAATAATAAAATAATGTACTAATAATGTAATAATAATAATAATAGTAATAA
* * *
11850075 AATATAATAGTTCATATAATATTAAAGCAATACTAAATATAATATGATAATAATAATTATAATGC
66 AATATAATAGTTAACATAATATTAAAGCAATACTAAATATAATATGATAATAAAAATTATAATGC
*
11850140 AGTACAAGAAATAAATAGAATATATTAATAATATTAAAAAAAGTAGCAAATAATAAGTA
131 AGTACAAAAAATAAATAGAATATATTAATAATATT-AAAAAAGTAGCAAATAATAAGTA
* *
11850199 ATAATAAAAAAGGAAAATAATAAAATAATGTACTAATAATGTGATAATAATAATAATAGTAATAA
1 ACAATAAAAAAGGAAAATAATAAAATAATGTACTAATAATGTAATAATAATAATAATAGTAATAA
* *
11850264 AATATAATAGTTAACGTAATATTAAAGCAATACTAAATATAATGTGATAATAAAAATTATAATGC
66 AATATAATAGTTAACATAATATTAAAGCAATACTAAATATAATATGATAATAAAAATTATAATGC
*
11850329 AGTACAAAAAATAAATAGAATATATTAATAATATTAAAAAAGTAGCAAATGATAAGTA
131 AGTACAAAAAATAAATAGAATATATTAATAATATTAAAAAAGTAGCAAATAATAAGTA
11850387 ACAATAAAAAAGGAAAATAATAAAATAATGTACTAATAATGTAATAATAATAATAATAGTAATAA
1 ACAATAAAAAAGGAAAATAATAAAATAATGTACTAATAATGTAATAATAATAATAATAGTAATAA
* *
11850452 AATATAATACTTAACATAATATTAAAGCAATACTAAATATAATATGATAATAAAAATTGTAATGC
66 AATATAATAGTTAACATAATATTAAAGCAATACTAAATATAATATGATAATAAAAATTATAATGC
*
11850517 AGTACAAAAAAATAAATAGAATGTATTAATAATATT-AAAAAGTAGCAAATAATAAGTA
131 AGTAC-AAAAAATAAATAGAATATATTAATAATATTAAAAAAGTAGCAAATAATAAGTA
11850575 ACA
1 ACA
11850578 TAATCATATT
Statistics
Matches: 360, Mismatches: 17, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
188 185 0.51
189 175 0.49
ACGTcount: A:0.59, C:0.04, G:0.08, T:0.29
Consensus pattern (188 bp):
ACAATAAAAAAGGAAAATAATAAAATAATGTACTAATAATGTAATAATAATAATAATAGTAATAA
AATATAATAGTTAACATAATATTAAAGCAATACTAAATATAATATGATAATAAAAATTATAATGC
AGTACAAAAAATAAATAGAATATATTAATAATATTAAAAAAGTAGCAAATAATAAGTA
Found at i:11851792 original size:15 final size:16
Alignment explanation
Indices: 11851772--11851911 Score: 153
Period size: 17 Copynumber: 8.6 Consensus size: 16
11851762 AAGGTTAAAA
*
11851772 GGGTTTTGGG-TTGTT
1 GGGTTTTGGGATAGTT
11851787 GGGTTTTGGGATAGTT
1 GGGTTTTGGGATAGTT
*
11851803 GGGTTTAAGGGATAGCTT
1 GGGTTT-TGGGATAG-TT
*
11851821 -GGTTTTGGAATAGTT
1 GGGTTTTGGGATAGTT
*
11851836 -GGTTTAAGGGATAGTT
1 GGGTTT-TGGGATAGTT
11851852 GGGTTTAAT-GGATAGTT
1 GGGTTT--TGGGATAGTT
11851869 GGGTTTTGGGATAGTT
1 GGGTTTTGGGATAGTT
*
11851885 GGGTTTAAGGGATAGTT
1 GGGTTT-TGGGATAGTT
11851902 GGGTTTTGGG
1 GGGTTTTGGG
11851912 CCAGGCAAAT
Statistics
Matches: 108, Mismatches: 9, Indels: 15
0.82 0.07 0.11
Matches are distributed among these distances:
15 18 0.17
16 41 0.38
17 46 0.43
18 3 0.03
ACGTcount: A:0.16, C:0.01, G:0.41, T:0.41
Consensus pattern (16 bp):
GGGTTTTGGGATAGTT
Found at i:11851816 original size:17 final size:17
Alignment explanation
Indices: 11851784--11851907 Score: 159
Period size: 17 Copynumber: 7.5 Consensus size: 17
11851774 GTTTTGGGTT
*
11851784 GTTGGGTTT-TGGGATA
1 GTTGGGTTTAAGGGATA
11851800 GTTGGGTTTAAGGGATA
1 GTTGGGTTTAAGGGATA
* *
11851817 GCTT-GGTTT-TGGAATA
1 G-TTGGGTTTAAGGGATA
11851833 GTT-GGTTTAAGGGATA
1 GTTGGGTTTAAGGGATA
*
11851849 GTTGGGTTTAATGGATA
1 GTTGGGTTTAAGGGATA
*
11851866 GTTGGGTTT-TGGGATA
1 GTTGGGTTTAAGGGATA
11851882 GTTGGGTTTAAGGGATA
1 GTTGGGTTTAAGGGATA
11851899 GTTGGGTTT
1 GTTGGGTTT
11851908 TGGGCCAGGC
Statistics
Matches: 94, Mismatches: 9, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
15 7 0.07
16 37 0.39
17 48 0.51
18 2 0.02
ACGTcount: A:0.19, C:0.01, G:0.40, T:0.41
Consensus pattern (17 bp):
GTTGGGTTTAAGGGATA
Found at i:11851826 original size:33 final size:34
Alignment explanation
Indices: 11851784--11851907 Score: 161
Period size: 33 Copynumber: 3.8 Consensus size: 34
11851774 GTTTTGGGTT
11851784 GTTGGGTTT-TGGGATAGTTGGGTTTAAGGGATA
1 GTTGGGTTTATGGGATAGTTGGGTTTAAGGGATA
*
11851817 GCTT-GGTTT-TGGAATAGTT-GGTTTAAGGGATA
1 G-TTGGGTTTATGGGATAGTTGGGTTTAAGGGATA
*
11851849 GTTGGGTTTAAT-GGATAGTTGGGTTT-TGGGATA
1 GTTGGGTTT-ATGGGATAGTTGGGTTTAAGGGATA
*
11851882 GTTGGGTTTAAGGGATAGTTGGGTTT
1 GTTGGGTTTATGGGATAGTTGGGTTT
11851908 TGGGCCAGGC
Statistics
Matches: 81, Mismatches: 4, Indels: 12
0.84 0.04 0.12
Matches are distributed among these distances:
31 2 0.02
32 20 0.25
33 51 0.63
34 8 0.10
ACGTcount: A:0.19, C:0.01, G:0.40, T:0.41
Consensus pattern (34 bp):
GTTGGGTTTATGGGATAGTTGGGTTTAAGGGATA
Found at i:11851850 original size:49 final size:50
Alignment explanation
Indices: 11851784--11851907 Score: 191
Period size: 49 Copynumber: 2.5 Consensus size: 50
11851774 GTTTTGGGTT
*
11851784 GTTGGGTTT-TGGGATAGTTGGGTTTAAGGGATAGCTT-GGTTTTGGAATA
1 GTTGGGTTTAAGGGATAGTTGGGTTTAAGGGATAG-TTGGGTTTTGGAATA
* *
11851833 GTT-GGTTTAAGGGATAGTTGGGTTTAATGGATAGTTGGGTTTTGGGATA
1 GTTGGGTTTAAGGGATAGTTGGGTTTAAGGGATAGTTGGGTTTTGGAATA
11851882 GTTGGGTTTAAGGGATAGTTGGGTTT
1 GTTGGGTTTAAGGGATAGTTGGGTTT
11851908 TGGGCCAGGC
Statistics
Matches: 69, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
48 7 0.10
49 40 0.58
50 22 0.32
ACGTcount: A:0.19, C:0.01, G:0.40, T:0.41
Consensus pattern (50 bp):
GTTGGGTTTAAGGGATAGTTGGGTTTAAGGGATAGTTGGGTTTTGGAATA
Found at i:11851908 original size:33 final size:32
Alignment explanation
Indices: 11851772--11851911 Score: 151
Period size: 33 Copynumber: 4.3 Consensus size: 32
11851762 AAGGTTAAAA
* *
11851772 GGGTTTTGGG-TTGTTGGGTTTTGGGATAGTT
1 GGGTTTTGGGATAGTTGGGTTTAGGGATAGTT
* * *
11851803 GGGTTTAAGGGATAGCTT-GGTTTTGGAATAGTT
1 GGGTTT-TGGGATAG-TTGGGTTTAGGGATAGTT
* *
11851836 -GGTTTAAGGGATAGTTGGGTTTAATGGATAGTT
1 GGGTTT-TGGGATAGTTGGGTTT-AGGGATAGTT
11851869 GGGTTTTGGGATAGTTGGGTTTAAGGGATAGTT
1 GGGTTTTGGGATAGTTGGGTTT-AGGGATAGTT
11851902 GGGTTTTGGG
1 GGGTTTTGGG
11851912 CCAGGCAAAT
Statistics
Matches: 95, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
31 8 0.08
32 22 0.23
33 58 0.61
34 7 0.07
ACGTcount: A:0.16, C:0.01, G:0.41, T:0.41
Consensus pattern (32 bp):
GGGTTTTGGGATAGTTGGGTTTAGGGATAGTT
Found at i:11852364 original size:66 final size:66
Alignment explanation
Indices: 11852282--11852477 Score: 320
Period size: 66 Copynumber: 3.0 Consensus size: 66
11852272 CAATCTACTC
* * * * * *
11852282 CGCTGAAACTTCAAGGAGATCTGCTGTGACTTCGAGCCGCTCCAATGCTATTTCAGGGAGAAGAT
1 CGCTGAAACTTCAAGGAGATTTGTTGTGGCTTCTAGCCGCTCCAACGCCATTTCAGGGAGAAGAT
11852347 T
66 T
11852348 CGCTGAAACTTCAAGGAGATTTGTTGTGGCTTCTAGCCGCTCCAACGCCATTTCAGGGAGAAGAT
1 CGCTGAAACTTCAAGGAGATTTGTTGTGGCTTCTAGCCGCTCCAACGCCATTTCAGGGAGAAGAT
11852413 T
66 T
* *
11852414 TGCTGAAACTTCAAGGAGATTTGTTGTGGCTTCTAGCTGCTCCAACGCCATTTCAGGGAGAAGA
1 CGCTGAAACTTCAAGGAGATTTGTTGTGGCTTCTAGCCGCTCCAACGCCATTTCAGGGAGAAGA
11852478 GAGTTGTAAT
Statistics
Matches: 122, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
66 122 1.00
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (66 bp):
CGCTGAAACTTCAAGGAGATTTGTTGTGGCTTCTAGCCGCTCCAACGCCATTTCAGGGAGAAGAT
T
Found at i:11864241 original size:13 final size:13
Alignment explanation
Indices: 11864223--11864248 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
11864213 AATAATGAAA
11864223 AATATTAAAATAT
1 AATATTAAAATAT
11864236 AATATTAAAATAT
1 AATATTAAAATAT
11864249 TAAAATAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
AATATTAAAATAT
Found at i:11864247 original size:21 final size:22
Alignment explanation
Indices: 11864221--11864261 Score: 75
Period size: 21 Copynumber: 1.9 Consensus size: 22
11864211 CAAATAATGA
11864221 AAAATATTAAAAT-ATAATATT
1 AAAATATTAAAATAATAATATT
11864242 AAAATATTAAAATAATAATA
1 AAAATATTAAAATAATAATA
11864262 ATAATATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (22 bp):
AAAATATTAAAATAATAATATT
Found at i:11864260 original size:3 final size:3
Alignment explanation
Indices: 11864192--11864340 Score: 56
Period size: 3 Copynumber: 53.3 Consensus size: 3
11864182 CATAAGAATA
* * *
11864192 AAT AAT GAA- AAT AAT GAT ACA- AAT AAT GAAA AAT ATT AA- AAT -AT
1 AAT AAT -AAT AAT AAT AAT A-AT AAT AAT -AAT AAT AAT AAT AAT AAT
* * * * *
11864236 AAT ATT AA- AAT ATT AA- AAT AAT AAT AAT AAT ATT TAC AAT AA- AA-
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
11864280 AAG AA- AAT AAT AA- AAT AAT -GT ACT AAT AAT -GT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
11864324 AGT AAT AA- AAT -AT AAT A
1 AAT AAT AAT AAT AAT AAT A
11864341 GTTAATATAA
Statistics
Matches: 107, Mismatches: 23, Indels: 32
0.66 0.14 0.20
Matches are distributed among these distances:
2 25 0.23
3 77 0.72
4 5 0.05
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:11864322 original size:14 final size:15
Alignment explanation
Indices: 11864303--11864352 Score: 59
Period size: 15 Copynumber: 3.3 Consensus size: 15
11864293 AATAATGTAC
11864303 TAATAAT-GTAATAA
1 TAATAATAGTAATAA
11864317 TAATAATAGTAATAA
1 TAATAATAGTAATAA
*
11864332 AATATAATAGTTAAT-A
1 TA-ATAATAG-TAATAA
11864348 TAATA
1 TAATA
11864353 TTAAAGCAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
14 7 0.23
15 11 0.35
16 9 0.29
17 4 0.13
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.36
Consensus pattern (15 bp):
TAATAATAGTAATAA
Found at i:11864335 original size:17 final size:16
Alignment explanation
Indices: 11864303--11864352 Score: 52
Period size: 16 Copynumber: 3.1 Consensus size: 16
11864293 AATAATGTAC
11864303 TAATAAT-GTAAT-AA
1 TAATAATAGTAATAAA
11864317 TAATAATAGTAATAAA
1 TAATAATAGTAATAAA
11864333 -ATATAATAGTTAATATAA
1 TA-ATAATAG-TAATA-AA
11864351 TA
1 TA
11864353 TTAAAGCAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
14 7 0.23
15 6 0.20
16 9 0.30
17 5 0.17
18 2 0.07
19 1 0.03
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.36
Consensus pattern (16 bp):
TAATAATAGTAATAAA
Found at i:11864353 original size:17 final size:16
Alignment explanation
Indices: 11864313--11864394 Score: 58
Period size: 17 Copynumber: 4.6 Consensus size: 16
11864303 TAATAATGTA
11864313 ATAATAATAATAGTAAT
1 ATAAT-ATAATAGTAAT
*
11864330 AAAATATAATAGTTAAT
1 ATAATATAATAG-TAAT
*
11864347 ATAATATTAA-AGCAAT
1 ATAATA-TAATAGTAAT
11864363 ACTAAATATAATATGATAAT
1 A-T-AATATAATA-G-TAAT
11864383 AATAATTATAAT
1 -ATAA-TATAAT
11864395 CCAGTACAAG
Statistics
Matches: 52, Mismatches: 4, Indels: 15
0.73 0.06 0.21
Matches are distributed among these distances:
16 11 0.21
17 19 0.37
18 8 0.15
19 3 0.06
20 10 0.19
21 1 0.02
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.35
Consensus pattern (16 bp):
ATAATATAATAGTAAT
Found at i:11864524 original size:17 final size:18
Alignment explanation
Indices: 11864489--11864531 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 18
11864479 AATAATGTAC
*
11864489 TAATAAT-GTGATAATAA
1 TAATAATAGTAATAATAA
11864506 TAATAATAGTAATAA-AA
1 TAATAATAGTAATAATAA
11864523 T-ATAATAGT
1 TAATAATAGT
11864532 TAACATAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 8 0.33
17 10 0.42
18 6 0.25
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.35
Consensus pattern (18 bp):
TAATAATAGTAATAATAA
Found at i:11864758 original size:182 final size:185
Alignment explanation
Indices: 11864271--11864828 Score: 928
Period size: 189 Copynumber: 3.0 Consensus size: 185
11864261 AATAATATTT
11864271 ACAATAAAAAA-GAAAATAATAAAATAATGTACTAATAATGTAATAATAATAATAGTAATAAAAT
1 ACAATAAAAAAGGAAAATAATAAAATAATGTACTAATAATGTAATAATAATAATAGTAATAAAAT
* * *
11864335 ATAATAGTTAATATAATATTAAAGCAATACTAAATATAATATGATAATAATAATTATAATCCAGT
66 ATAATAGTTAACATAATATTAAAGCAATACTAAATATAATATGATAATAAAAATTATAATGCAGT
*
11864400 ACAAGAAATAAATAGAATATATTAATAATATTAAAAAAAGTAGCAAATAATAAGTA
131 ACAAAAAATAAATAGAATATATTAATAATATT-AAAAAAGTAGCAAATAATAAGTA
* *
11864456 ACAATAAAAAAGAAAAATATTAAAATAATGTACTAATAATGTGATAATAATAATAATAGTAATAA
1 ACAATAAAAAAGGAAAATAATAAAATAATGTACTAATAA--TG-TAATAATAATAATAGTAATAA
*
11864521 AATATAATAGTTAACATAATATTAAAGCAATACTAAATATAATGTGATAATAAAAATTATAATGC
63 AATATAATAGTTAACATAATATTAAAGCAATACTAAATATAATATGATAATAAAAATTATAATGC
* *
11864586 AGTACAAAAAATAAAAAGAATATATTAATAATATTAAAAAAGTAGCAAATGATAAGTA
128 AGTACAAAAAATAAATAGAATATATTAATAATATTAAAAAAGTAGCAAATAATAAGTA
11864644 ACAATAAAAAAGGAAAATAATAAAATAATGTACTAATAATGTAATAATAAT-A-A-TAATAAAAT
1 ACAATAAAAAAGGAAAATAATAAAATAATGTACTAATAATGTAATAATAATAATAGTAATAAAAT
* *
11864706 ATAATACTTAACATAATATTAAAGCAATACTAAATATAATATGATAATAAAAATTGTAATGCAGT
66 ATAATAGTTAACATAATATTAAAGCAATACTAAATATAATATGATAATAAAAATTATAATGCAGT
*
11864771 ACAAAAAAATAAATAGAATGTATTAATAATATT-AAAAAGTAGCAAATAATAAGTA
131 AC-AAAAAATAAATAGAATATATTAATAATATTAAAAAAGTAGCAAATAATAAGTA
11864826 ACA
1 ACA
11864829 TAATCATATT
Statistics
Matches: 351, Mismatches: 17, Indels: 13
0.92 0.04 0.03
Matches are distributed among these distances:
182 97 0.28
183 29 0.08
184 1 0.00
185 21 0.06
186 27 0.08
188 61 0.17
189 115 0.33
ACGTcount: A:0.59, C:0.05, G:0.08, T:0.28
Consensus pattern (185 bp):
ACAATAAAAAAGGAAAATAATAAAATAATGTACTAATAATGTAATAATAATAATAGTAATAAAAT
ATAATAGTTAACATAATATTAAAGCAATACTAAATATAATATGATAATAAAAATTATAATGCAGT
ACAAAAAATAAATAGAATATATTAATAATATTAAAAAAGTAGCAAATAATAAGTA
Found at i:11866092 original size:17 final size:17
Alignment explanation
Indices: 11866066--11866104 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
11866056 ATTTTAGGTT
* *
11866066 GTTGGGTTTAAGGGATA
1 GTTGGATTTAAAGGATA
11866083 GTTGGATTTAAAGGATA
1 GTTGGATTTAAAGGATA
*
11866100 ATTGG
1 GTTGG
11866105 GTTTTGGGCC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.28, C:0.00, G:0.36, T:0.36
Consensus pattern (17 bp):
GTTGGATTTAAAGGATA
Found at i:11874235 original size:17 final size:19
Alignment explanation
Indices: 11874213--11874251 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
11874203 GTGGTGTGGA
11874213 AAAGTTTA-A-TAAAATTC
1 AAAGTTTACAGTAAAATTC
11874230 AAAGTTTACGAGTAAAATTC
1 AAAGTTTAC-AGTAAAATTC
11874250 AA
1 AA
11874252 TCACATAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 8 0.42
19 1 0.05
20 10 0.53
ACGTcount: A:0.51, C:0.08, G:0.10, T:0.31
Consensus pattern (19 bp):
AAAGTTTACAGTAAAATTC
Found at i:11875096 original size:15 final size:16
Alignment explanation
Indices: 11875062--11875098 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
11875052 AACTGGCCCC
11875062 TTTAATTCTTAAATTT
1 TTTAATTCTTAAATTT
11875078 TTTAATT-TT-AATTT
1 TTTAATTCTTAAATTT
11875092 ATTTAAT
1 -TTTAAT
11875099 AATTTAATCT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 5 0.25
15 8 0.40
16 7 0.35
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (16 bp):
TTTAATTCTTAAATTT
Found at i:11877129 original size:42 final size:42
Alignment explanation
Indices: 11877078--11877364 Score: 434
Period size: 42 Copynumber: 6.8 Consensus size: 42
11877068 GTTTACAAAC
* *
11877078 AAAAACGCCGTTAAAGACCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
11877120 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
*
11877162 AAAAATGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
* *
11877204 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCG-TTTGTAA
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAG-AA
* * * *
11877246 AAAAATGCCACTAAAGACCATGTTCTTTAGCGGCGCTTAGGA
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
* *
11877288 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTA-AGG
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGA-A
*
11877330 GAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCG
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCG
11877365 TTTTTTTTCT
Statistics
Matches: 224, Mismatches: 18, Indels: 6
0.90 0.07 0.02
Matches are distributed among these distances:
41 3 0.01
42 218 0.97
43 3 0.01
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.24
Consensus pattern (42 bp):
AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
Found at i:11877420 original size:84 final size:82
Alignment explanation
Indices: 11877078--11877451 Score: 408
Period size: 84 Copynumber: 4.5 Consensus size: 82
11877068 GTTTACAAAC
* * *
11877078 AAAAACGCCGTTAAAGACCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGATCATGT
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGT
* **
11877143 TCTTTAGCGGCGCTTAGAA
66 TCTTTAGCGGC-ATT-TTA
*
11877162 AAAAATGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGT
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGT
*
11877227 TCTTTAGCGGCGTTTGTAA
66 TCTTTAGCGGCATTT-T-A
* * * *
11877246 AAAAATGCCACTAAAGACCATGTTCTTTAGCGGCGCTTAGGAAAAAACGCCGCTAAAGAACATGT
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGT
**
11877311 TCTTTAGCGGC-GCTTA
66 TCTTTAGCGGCATTTTA
* ****** *
11877327 AGGGAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTTTTTTCTAATCGCCGCTAAAGAAC
1 A---AAAACGCCGCTAAAGATCATGTTCTTTAGCGGCG-CTTAGAAAAAAACGCCGCTAAAGAAC
* *
11877392 ATGTTCTTTAGTGGCATTTTTT
62 ATGTTCTTTAGCGGCA-TTTTA
* * * *
11877414 ACAAACGCCGCAAAAGAACATGTTCTTTAGTGGCGCTT
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTT
11877452 TTATACAAAA
Statistics
Matches: 250, Mismatches: 32, Indels: 17
0.84 0.11 0.06
Matches are distributed among these distances:
81 2 0.01
82 1 0.00
83 5 0.02
84 207 0.83
85 32 0.13
87 3 0.01
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (82 bp):
AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGT
TCTTTAGCGGCATTTTA
Found at i:11877420 original size:126 final size:126
Alignment explanation
Indices: 11877078--11877451 Score: 430
Period size: 126 Copynumber: 3.0 Consensus size: 126
11877068 GTTTACAAAC
* * * * * *
11877078 AAAAACGCCGTTAAAGACCATGTTCTTTAGCGGCGCTTAG-AAAAAAACGCCGCTAAAGATCATG
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCG-TTTGTAAAAAAATGCCACTAAAGAACATG
* * * *
11877142 TTCTTTAGCGGCGCTTAGAAAAAAATGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
65 TTCTTTAGCGGCGATTAGGAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
*
11877204 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTGTAAAAAAATGCCACTAAAGACCATGT
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTGTAAAAAAATGCCACTAAAGAACATGT
* *
11877269 TCTTTAGCGGCGCTTAGGAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTA-AGG
66 TCTTTAGCGGCGATTAGGAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGA-A
* * * ***** *
11877330 GAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTTTTTTCTAATCGCCGCTAAAGAACATG
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTGTAAAAAAAT-GCCACTAAAGAACATG
* **** * * *
11877395 TTCTTTAGTGGC-ATTTTTTACAAACGCCGCAAAAGAACATGTTCTTTAGTGGCGCTT
65 TTCTTTAGCGGCGATTAGGAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTT
11877452 TTATACAAAA
Statistics
Matches: 216, Mismatches: 29, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
125 4 0.02
126 187 0.87
127 25 0.12
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (126 bp):
AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTGTAAAAAAATGCCACTAAAGAACATGT
TCTTTAGCGGCGATTAGGAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
Found at i:11877542 original size:14 final size:14
Alignment explanation
Indices: 11877519--11877552 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
11877509 GCCCTCCTGT
*
11877519 AGCAAAATTTCAAA
1 AGCAACATTTCAAA
11877533 AGCAACATTTCAAA
1 AGCAACATTTCAAA
11877547 AGCAAC
1 AGCAAC
11877553 CAATAGCAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.53, C:0.21, G:0.09, T:0.18
Consensus pattern (14 bp):
AGCAACATTTCAAA
Found at i:11877844 original size:21 final size:21
Alignment explanation
Indices: 11877776--11877846 Score: 79
Period size: 21 Copynumber: 3.4 Consensus size: 21
11877766 TTTTGCTCTG
* *
11877776 CTCTGCTTCTCTTGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
* *
11877797 CTCCGCTTCCCTCGCTGCAGT
1 CTCTGCTTCCCTCGCTGCAGC
* * *
11877818 CGCTGCTTCCCTCGCTTCCGC
1 CTCTGCTTCCCTCGCTGCAGC
11877839 CTCTGCTT
1 CTCTGCTT
11877847 TAAGTTGTAG
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.03, C:0.45, G:0.18, T:0.34
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCAGC
Found at i:11883344 original size:11 final size:9
Alignment explanation
Indices: 11883296--11883383 Score: 64
Period size: 9 Copynumber: 9.9 Consensus size: 9
11883286 AATTGCAATG
11883296 GTAAGTTAT
1 GTAAGTTAT
11883305 GTAAGTTAT
1 GTAAGTTAT
11883314 GTAAGTTAAAT
1 GTAAGTT--AT
11883325 GT-A-TTAT
1 GTAAGTTAT
11883332 GTAAGTTAAAT
1 GTAAGTT--AT
11883343 GTAAG-T-T
1 GTAAGTTAT
11883350 GTAAGTTAT
1 GTAAGTTAT
*
11883359 -TATGTATTAT
1 GTAAG--TTAT
11883369 GTAAG-T-T
1 GTAAGTTAT
11883376 GTAAGTTA
1 GTAAGTTA
11883384 AATGTATTGT
Statistics
Matches: 64, Mismatches: 2, Indels: 26
0.70 0.02 0.28
Matches are distributed among these distances:
7 16 0.25
8 7 0.11
9 21 0.33
10 6 0.09
11 14 0.22
ACGTcount: A:0.35, C:0.00, G:0.20, T:0.44
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:11883375 original size:26 final size:26
Alignment explanation
Indices: 11883341--11883719 Score: 550
Period size: 26 Copynumber: 15.1 Consensus size: 26
11883331 TGTAAGTTAA
11883341 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
*
11883367 ATGTAAGTTGTAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
* *
11883392 GTGTAAGTTGTAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
*
11883417 ATGCAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
11883443 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
* * *
11883469 GTGTAAGTTGCAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
11883494 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
11883520 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
*
11883546 GTGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
11883572 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
* *
11883598 GTGTAAGTTGTAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
* *
11883623 ATGTCA---GTCA---A--ATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
*
11883641 ATGTAAGTTGTAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
11883666 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
11883692 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
11883718 AT
1 AT
11883720 TTAATAAAAT
Statistics
Matches: 321, Mismatches: 22, Indels: 20
0.88 0.06 0.06
Matches are distributed among these distances:
18 12 0.04
19 1 0.00
21 3 0.01
22 3 0.01
24 1 0.00
25 103 0.32
26 198 0.62
ACGTcount: A:0.32, C:0.01, G:0.20, T:0.47
Consensus pattern (26 bp):
ATGTAAGTTGTAAGTTATTATGTATT
Found at i:11883461 original size:19 final size:19
Alignment explanation
Indices: 11883439--11883595 Score: 70
Period size: 19 Copynumber: 8.5 Consensus size: 19
11883429 AGTTATTATG
11883439 TATTATGTAAGTTGTAAGT
1 TATTATGTAAGTTGTAAGT
11883458 TATTATGT-A-TTGT--GT
1 TATTATGTAAGTTGTAAGT
* * * *
11883473 AAGT-TGCAAG-T-TAAAT
1 TATTATGTAAGTTGTAAGT
11883489 GTATTATGTAAGTTGTAAGTTAT
1 -TATTATGTAAGTTGTAAG---T
11883512 TATGTATTATGTAAGTTGTAAGT
1 TA----TTATGTAAGTTGTAAGT
11883535 TATTATGT-A-TTGT--GT
1 TATTATGTAAGTTGTAAGT
* * * *
11883550 AAGT-TGTAAGTTATTA-T
1 TATTATGTAAGTTGTAAGT
11883567 GTATTATGTAAGTTGTAAGT
1 -TATTATGTAAGTTGTAAGT
11883587 TATTATGTA
1 TATTATGTA
11883596 TTGTGTAAGT
Statistics
Matches: 101, Mismatches: 15, Indels: 44
0.63 0.09 0.28
Matches are distributed among these distances:
14 6 0.06
15 11 0.11
16 4 0.04
17 11 0.11
18 9 0.09
19 34 0.34
20 4 0.04
22 2 0.02
23 4 0.04
26 16 0.16
ACGTcount: A:0.31, C:0.01, G:0.20, T:0.48
Consensus pattern (19 bp):
TATTATGTAAGTTGTAAGT
Found at i:11883674 original size:18 final size:18
Alignment explanation
Indices: 11883606--11883649 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
11883596 TTGTGTAAGT
11883606 TGTAAGTTAAATGTATTA
1 TGTAAGTTAAATGTATTA
* *
11883624 TGTCAGTCAAATGTATTA
1 TGTAAGTTAAATGTATTA
11883642 TGTAAGTT
1 TGTAAGTT
11883650 GTAAGTTAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.34, C:0.05, G:0.18, T:0.43
Consensus pattern (18 bp):
TGTAAGTTAAATGTATTA
Found at i:11883913 original size:74 final size:74
Alignment explanation
Indices: 11883756--11883903 Score: 296
Period size: 74 Copynumber: 2.0 Consensus size: 74
11883746 ACATTACTAA
11883756 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
1 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
11883821 TATTTTTTT
66 TATTTTTTT
11883830 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
1 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
11883895 TATTTTTTT
66 TATTTTTTT
11883904 ATATTTTATT
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 74 1.00
ACGTcount: A:0.41, C:0.07, G:0.01, T:0.51
Consensus pattern (74 bp):
TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
TATTTTTTT
Found at i:11884071 original size:13 final size:13
Alignment explanation
Indices: 11884053--11884123 Score: 106
Period size: 13 Copynumber: 5.5 Consensus size: 13
11884043 ATTTATAATT
11884053 ATTTAAGTAATAA
1 ATTTAAGTAATAA
* *
11884066 ATTTAAGTAACAT
1 ATTTAAGTAATAA
11884079 ATTTAAGTAATAA
1 ATTTAAGTAATAA
* *
11884092 ATTTAAGTAACAT
1 ATTTAAGTAATAA
11884105 ATTTAAGTAATAA
1 ATTTAAGTAATAA
11884118 ATTTAA
1 ATTTAA
11884124 ACAAATTTTA
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 50 1.00
ACGTcount: A:0.51, C:0.03, G:0.07, T:0.39
Consensus pattern (13 bp):
ATTTAAGTAATAA
Found at i:11884082 original size:26 final size:26
Alignment explanation
Indices: 11884052--11884123 Score: 144
Period size: 26 Copynumber: 2.8 Consensus size: 26
11884042 TATTTATAAT
11884052 TATTTAAGTAATAAATTTAAGTAACA
1 TATTTAAGTAATAAATTTAAGTAACA
11884078 TATTTAAGTAATAAATTTAAGTAACA
1 TATTTAAGTAATAAATTTAAGTAACA
11884104 TATTTAAGTAATAAATTTAA
1 TATTTAAGTAATAAATTTAA
11884124 ACAAATTTTA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.50, C:0.03, G:0.07, T:0.40
Consensus pattern (26 bp):
TATTTAAGTAATAAATTTAAGTAACA
Found at i:11884150 original size:17 final size:17
Alignment explanation
Indices: 11884128--11884426 Score: 161
Period size: 17 Copynumber: 16.6 Consensus size: 17
11884118 ATTTAAACAA
11884128 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
11884145 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
*
11884162 ATTTTAGTAA-TAAATTT
1 ATTTTAGTAAGT-AATGT
11884179 AAACAAATTTTAGTAAGTAATGT
1 ------ATTTTAGTAAGTAATGT
* * *
11884202 ATTTAAGTAATTAAT-A
1 ATTTTAGTAAGTAATGT
* *
11884218 AATTTA--AA-CAA---
1 ATTTTAGTAAGTAATGT
11884229 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
11884246 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
*
11884263 ATTTTAGTAA-TAAATTT
1 ATTTTAGTAAGT-AATGT
11884280 AAACAAATTTTAGTAAGTAATGT
1 ------ATTTTAGTAAGTAATGT
* *
11884303 ATTTTAG-AAATAAATTT
1 ATTTTAGTAAGT-AATGT
*
11884320 AAACAAATTTATGTAAGTAATGT
1 -----ATTTTA-GTAAGTAATGT
11884343 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
*
11884360 ATTTTAGTAA-TAAATTT
1 ATTTTAGTAAGT-AATGT
*
11884377 AAACAAATTTTAGTAAGTAATTT
1 ------ATTTTAGTAAGTAATGT
11884400 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
11884417 ATTTTAGTAA
1 ATTTTAGTAA
11884427 TAAATTTAAC
Statistics
Matches: 224, Mismatches: 20, Indels: 76
0.70 0.06 0.24
Matches are distributed among these distances:
11 5 0.02
13 4 0.02
14 4 0.02
16 10 0.04
17 137 0.61
18 5 0.02
22 5 0.02
23 48 0.21
24 6 0.03
ACGTcount: A:0.43, C:0.02, G:0.12, T:0.44
Consensus pattern (17 bp):
ATTTTAGTAAGTAATGT
Found at i:11884174 original size:57 final size:57
Alignment explanation
Indices: 11884095--11884435 Score: 375
Period size: 57 Copynumber: 6.5 Consensus size: 57
11884085 GTAATAAATT
** *
11884095 TAAGTAACATATTTAAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
1 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
11884152 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTA--TT--
1 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
* * *
11884205 TAAGTAAT-TA----A-T-A-AATTTAAACA-AATTTT-AGTAAGTAATGTATTTTAG
1 TAAGTAATGTATTTTAGTAATAAATTTAA-ACAAATTTTAGTAAGTAATGTATTTTAG
11884253 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
1 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
* *
11884310 -AAATAA---A-TTTA--AACAAATTT-----A----T-GTAAGTAATGTATTTTAG
1 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
*
11884350 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATTTATTTTAG
1 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
11884407 TAAGTAATGTATTTTAGTAATAAATTTAA
1 TAAGTAATGTATTTTAGTAATAAATTTAA
11884436 CATTCAATCG
Statistics
Matches: 238, Mismatches: 14, Indels: 64
0.75 0.04 0.20
Matches are distributed among these distances:
40 18 0.08
41 6 0.03
44 14 0.06
45 16 0.07
46 4 0.02
47 9 0.04
48 9 0.04
49 2 0.01
50 8 0.03
52 7 0.03
53 10 0.04
54 1 0.00
55 4 0.02
56 17 0.07
57 113 0.47
ACGTcount: A:0.44, C:0.02, G:0.11, T:0.43
Consensus pattern (57 bp):
TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
Found at i:11884189 original size:40 final size:40
Alignment explanation
Indices: 11884145--11884255 Score: 177
Period size: 44 Copynumber: 2.7 Consensus size: 40
11884135 TAAGTAATGT
11884145 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAA
1 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAA
*
11884185 ATTTTAGTAAGTAATGTATTTAAGTAATTAATAAATTTAAACAA
1 ATTTTAGTAAGTAATGTATTT---T-AGTAATAAATTTAAACAA
11884229 ATTTTAGTAAGTAATGTATTTTAGTAA
1 ATTTTAGTAAGTAATGTATTTTAGTAA
11884256 GTAATGTATT
Statistics
Matches: 65, Mismatches: 2, Indels: 8
0.87 0.03 0.11
Matches are distributed among these distances:
40 25 0.38
41 1 0.02
43 1 0.02
44 38 0.58
ACGTcount: A:0.44, C:0.02, G:0.11, T:0.43
Consensus pattern (40 bp):
ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAA
Found at i:11884231 original size:101 final size:100
Alignment explanation
Indices: 11884112--11884414 Score: 533
Period size: 101 Copynumber: 3.0 Consensus size: 100
11884102 CATATTTAAG
11884112 TAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAAGTAATGTATTTTAGTAATAAAT
1 TAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAAGTAATGTATTTTAGTAATAAAT
*
11884177 TTAAACAAATTTTAGTAAGTAATGTATTTAAGTAA
66 TTAAACAAATTTTAGTAAGTAATGTATTTTAGTAA
11884212 TTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAAGTAATGTATTTTAGTAATAAA
1 -TAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAAGTAATGTATTTTAGTAATAAA
11884277 TTTAAACAAATTTTAGTAAGTAATGTATTTTAG--A
65 TTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAA
11884311 -AATAAATTTAAACAAA-TTTATGTAAGTAATGTATTTTAGTAAGTAATGTATTTTAGTAATAAA
1 TAATAAATTTAAACAAATTTTA-GTAAGTAATGTATTTTAGTAAGTAATGTATTTTAGTAATAAA
*
11884374 TTTAAACAAATTTTAGTAAGTAATTTATTTTAGTAA
65 TTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAA
11884410 GTAAT
1 -TAAT
11884415 GTATTTTAGT
Statistics
Matches: 195, Mismatches: 2, Indels: 10
0.94 0.01 0.05
Matches are distributed among these distances:
96 4 0.02
97 90 0.46
99 2 0.01
101 99 0.51
ACGTcount: A:0.44, C:0.02, G:0.11, T:0.43
Consensus pattern (100 bp):
TAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAAGTAATGTATTTTAGTAATAAAT
TTAAACAAATTTTAGTAAGTAATGTATTTTAGTAA
Found at i:11884293 original size:40 final size:40
Alignment explanation
Indices: 11884246--11884352 Score: 189
Period size: 40 Copynumber: 2.7 Consensus size: 40
11884236 TAAGTAATGT
11884246 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAA
1 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAA
*
11884286 ATTTTAGTAAGTAATGTATTTTAGAAATAAATTTAAACAA
1 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAA
11884326 A-TTTATGTAAGTAATGTATTTTAGTAA
1 ATTTTA-GTAAGTAATGTATTTTAGTAA
11884353 GTAATGTATT
Statistics
Matches: 64, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
39 4 0.06
40 60 0.94
ACGTcount: A:0.44, C:0.02, G:0.11, T:0.43
Consensus pattern (40 bp):
ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAA
Found at i:11884406 original size:97 final size:97
Alignment explanation
Indices: 11884095--11884403 Score: 521
Period size: 97 Copynumber: 3.1 Consensus size: 97
11884085 GTAATAAATT
** *
11884095 TAAGTAACATATTTAAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAAGTAAT
1 TAAGTAATGTATTTAAGAAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAAGTAAT
11884160 GTATTTTAGTAATAAATTTAAACAAATTTTAG
66 GTATTTTAGTAATAAATTTAAACAAATTTTAG
11884192 TAAGTAATGTATTTAAGTAATTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAAG
1 TAAGTAATGTATTTAAG--A--AATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAAG
11884257 TAATGTATTTTAGTAATAAATTTAAACAAATTTTAG
62 TAATGTATTTTAGTAATAAATTTAAACAAATTTTAG
*
11884293 TAAGTAATGTATTTTAGAAATAAATTTAAACAAA-TTTATGTAAGTAATGTATTTTAGTAAGTAA
1 TAAGTAATGTATTTAAGAAATAAATTTAAACAAATTTTA-GTAAGTAATGTATTTTAGTAAGTAA
11884357 TGTATTTTAGTAATAAATTTAAACAAATTTTAG
65 TGTATTTTAGTAATAAATTTAAACAAATTTTAG
*
11884390 TAAGTAATTTATTT
1 TAAGTAATGTATTT
11884404 TAGTAAGTAA
Statistics
Matches: 202, Mismatches: 5, Indels: 10
0.93 0.02 0.05
Matches are distributed among these distances:
96 4 0.02
97 102 0.50
99 1 0.00
101 95 0.47
ACGTcount: A:0.44, C:0.02, G:0.11, T:0.43
Consensus pattern (97 bp):
TAAGTAATGTATTTAAGAAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAAGTAAT
GTATTTTAGTAATAAATTTAAACAAATTTTAG
Found at i:11885784 original size:11 final size:11
Alignment explanation
Indices: 11885768--11885807 Score: 64
Period size: 11 Copynumber: 3.7 Consensus size: 11
11885758 GATGATAATA
11885768 CATTAGTTACC
1 CATTAGTTACC
11885779 CATTAGTTACC
1 CATTAGTTACC
*
11885790 CACTAGTTACC
1 CATTAGTTACC
11885801 CA-TAGTT
1 CATTAGTT
11885808 TGAGATATTC
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
10 5 0.18
11 23 0.82
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.35
Consensus pattern (11 bp):
CATTAGTTACC
Found at i:11887251 original size:14 final size:14
Alignment explanation
Indices: 11887232--11887261 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
11887222 CACGAACAGC
11887232 AAGATGATTAACTA
1 AAGATGATTAACTA
11887246 AAGATGATTAACTA
1 AAGATGATTAACTA
11887260 AA
1 AA
11887262 AACCTTTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.53, C:0.07, G:0.13, T:0.27
Consensus pattern (14 bp):
AAGATGATTAACTA
Found at i:11887490 original size:36 final size:36
Alignment explanation
Indices: 11887449--11887564 Score: 116
Period size: 36 Copynumber: 3.2 Consensus size: 36
11887439 AAAAACAAAT
11887449 TATTTCAGACTCAAAAATTATTTCAAATCCAAAGCA
1 TATTTCAGACTCAAAAATTATTTCAAATCCAAAGCA
* ** *
11887485 TATTTCAGAACAT-AACAACA-TA-ATCAAAAACAAA--T
1 TATTTCAG-AC-TCAA-AA-ATTATTTCAAATCCAAAGCA
*
11887520 TATTTCAGACTCAGAAATTATTTCAAATCCAAAGCA
1 TATTTCAGACTCAAAAATTATTTCAAATCCAAAGCA
11887556 TATTTCAGA
1 TATTTCAGA
11887565 ACATAACAAC
Statistics
Matches: 62, Mismatches: 9, Indels: 18
0.70 0.10 0.20
Matches are distributed among these distances:
32 1 0.02
33 5 0.08
34 12 0.19
35 8 0.13
36 17 0.27
37 13 0.21
38 5 0.08
39 1 0.02
ACGTcount: A:0.47, C:0.18, G:0.06, T:0.29
Consensus pattern (36 bp):
TATTTCAGACTCAAAAATTATTTCAAATCCAAAGCA
Found at i:11887513 original size:71 final size:71
Alignment explanation
Indices: 11887397--11887597 Score: 368
Period size: 71 Copynumber: 2.8 Consensus size: 71
11887387 CCAGATCCAG
*
11887397 ATTTCAGAA-CCAAAGCATAATTCAGAACATAACAACATAATCAAAAACAAATTATTTCAGACTC
1 ATTTCA-AATCCAAAGCATATTTCAGAACATAACAACATAATCAAAAACAAATTATTTCAGACTC
11887461 AAAAATT
65 AAAAATT
11887468 ATTTCAAATCCAAAGCATATTTCAGAACATAACAACATAATCAAAAACAAATTATTTCAGACTCA
1 ATTTCAAATCCAAAGCATATTTCAGAACATAACAACATAATCAAAAACAAATTATTTCAGACTCA
*
11887533 GAAATT
66 AAAATT
11887539 ATTTCAAATCCAAAGCATATTTCAGAACATAACAACATAATCAAAAACAAATTATTTCA
1 ATTTCAAATCCAAAGCATATTTCAGAACATAACAACATAATCAAAAACAAATTATTTCA
11887598 AATCCACTCA
Statistics
Matches: 127, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
70 2 0.02
71 125 0.98
ACGTcount: A:0.51, C:0.18, G:0.05, T:0.26
Consensus pattern (71 bp):
ATTTCAAATCCAAAGCATATTTCAGAACATAACAACATAATCAAAAACAAATTATTTCAGACTCA
AAAATT
Found at i:11887932 original size:22 final size:22
Alignment explanation
Indices: 11887904--11887950 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
11887894 GTGGCTGTAA
*
11887904 TAACAGAAACGCCTTACCTATT
1 TAACAGAAACGCCTTACATATT
11887926 TAACAGAAACGCCTTACATATT
1 TAACAGAAACGCCTTACATATT
11887948 TAA
1 TAA
11887951 TCGGAATAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.28
Consensus pattern (22 bp):
TAACAGAAACGCCTTACATATT
Found at i:11888965 original size:15 final size:15
Alignment explanation
Indices: 11888932--11888999 Score: 57
Period size: 15 Copynumber: 4.4 Consensus size: 15
11888922 GATTTAACCC
* *
11888932 TAAACCTCTAAACTTT
1 TAAACC-CTAAAATCT
11888948 TAAACCCTAAAATCT
1 TAAACCCTAAAATCT
*
11888963 TAAACTGCT-AAATCGT
1 TAAAC-CCTAAAATC-T
*
11888979 TAAACCCTAAACTCT
1 TAAACCCTAAAATCT
*
11888994 AAAACC
1 TAAACC
11889000 AACAACCAGA
Statistics
Matches: 43, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
15 25 0.58
16 18 0.42
ACGTcount: A:0.43, C:0.26, G:0.03, T:0.28
Consensus pattern (15 bp):
TAAACCCTAAAATCT
Found at i:11889111 original size:14 final size:14
Alignment explanation
Indices: 11889092--11889162 Score: 56
Period size: 14 Copynumber: 5.0 Consensus size: 14
11889082 ACCCCAGACT
11889092 CCTAAACCTTAAAC
1 CCTAAACCTTAAAC
*
11889106 CCTAAACACCCTAATAC
1 CCT-AA-ACCTTAA-AC
11889123 CCT-AACCTTAAA-
1 CCTAAACCTTAAAC
* * *
11889135 CCTACATCGTAAAC
1 CCTAAACCTTAAAC
*
11889149 CCTAAACTTTAAAC
1 CCTAAACCTTAAAC
11889163 TTTACACTGT
Statistics
Matches: 43, Mismatches: 9, Indels: 10
0.69 0.15 0.16
Matches are distributed among these distances:
12 3 0.07
13 7 0.16
14 19 0.44
15 3 0.07
16 6 0.14
17 5 0.12
ACGTcount: A:0.41, C:0.35, G:0.01, T:0.23
Consensus pattern (14 bp):
CCTAAACCTTAAAC
Found at i:11889604 original size:113 final size:115
Alignment explanation
Indices: 11889399--11889604 Score: 290
Period size: 113 Copynumber: 1.8 Consensus size: 115
11889389 ATCAACAAAT
* * * *
11889399 CGCCGCTAATACTATGCTTTAGCGGCGTTTTACCGAAATCGCCACTAAATCAAGTATACATCAAG
1 CGCCGCTAATACTATGCTTTAACGGCGTTTCACCGAAAGCGCCACTAAATCAACTATACATCAAG
*
11889464 ACCAAAACGATGCGTTTTGGTTCAGATACTTGGTGACGCTTTTATCCAAG
66 ACCAAAACGATGCGTTTTGGTTAAGATACTTGGTGACGCTTTTATCCAAG
* * * *
11889514 CGCCGCTAATACTATGCTTTAACGGCGTTTCA-C-TAAGCGCCACTAATTCTACTATACATCGAG
1 CGCCGCTAATACTATGCTTTAACGGCGTTTCACCGAAAGCGCCACTAAATCAACTATACATCAAG
* **
11889577 GCCAAAATTATGCGTTTTGGTTAAGATA
66 ACCAAAACGATGCGTTTTGGTTAAGATA
11889605 TTTTGCTGCT
Statistics
Matches: 79, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
113 48 0.61
114 1 0.01
115 30 0.38
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (115 bp):
CGCCGCTAATACTATGCTTTAACGGCGTTTCACCGAAAGCGCCACTAAATCAACTATACATCAAG
ACCAAAACGATGCGTTTTGGTTAAGATACTTGGTGACGCTTTTATCCAAG
Done.