Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 47 of 255
Found at i:12936626 original size:156 final size:156
Alignment explanation
Indices: 12936338--12936629 Score: 460
Period size: 156 Copynumber: 1.9 Consensus size: 156
12936328 CGAAGAAACA
* * * *
12936338 GATTTGGCATCTCCATATTCGACGGAGAGCATATCGAAGACATAGCAGATCTGACCTTCATTGCA
1 GATTTGGCATCTCCATATTAGACGGAGAGCAAATCGAAGACATAACAGATCTGACCTTCATTGAA
* * *
12936403 GCAGATCCAAGATGATTTGGCATCTCTGTATTAGATGGGGAGTAGATTGAAGACACAGCAGATCT
66 GCAGATCCAAGATGATTTGGCATCTCTGTATTAGATGGGGAGCAGATCGAAGACACAGCAGACCT
12936468 GACCTTAATTGAAGCAAATCTAAGAT
131 GACCTTAATTGAAGCAAATCTAAGAT
** * *
12936494 GATTTGGCATCTCTGTATTAGACGGGGAGTAAATCGAAGACATAACAGAT-TGGACCTTCATTGA
1 GATTTGGCATCTCCATATTAGACGGAGAGCAAATCGAAGACATAACAGATCT-GACCTTCATTGA
*
12936558 AGCAGATCCAAGATGATTTGGCATCTCTGTATTAGATGGGGAGCAGATCGAAGACATAGCAGACC
65 AGCAGATCCAAGATGATTTGGCATCTCTGTATTAGATGGGGAGCAGATCGAAGACACAGCAGACC
12936623 TGACCTT
130 TGACCTT
12936630 CATGTGTTTA
Statistics
Matches: 123, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
155 1 0.01
156 122 0.99
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (156 bp):
GATTTGGCATCTCCATATTAGACGGAGAGCAAATCGAAGACATAACAGATCTGACCTTCATTGAA
GCAGATCCAAGATGATTTGGCATCTCTGTATTAGATGGGGAGCAGATCGAAGACACAGCAGACCT
GACCTTAATTGAAGCAAATCTAAGAT
Found at i:12936773 original size:44 final size:45
Alignment explanation
Indices: 12936646--12936839 Score: 248
Period size: 45 Copynumber: 4.3 Consensus size: 45
12936636 TTTACATCGA
* * * *
12936646 AGCAGATCCAAGATGACAGATTTGGCATCTCTGTATTAGACGGGG
1 AGCAGATCGAAGATAACAAATTTGGCGTCTCTGTATTAGACGGGG
* * *
12936691 AGCAAATC-AGAGATAACAAATTTGGCATCTCTGTATTAGACGGAG
1 AGCAGATCGA-AGATAACAAATTTGGCGTCTCTGTATTAGACGGGG
* ** * *
12936736 AGCAGATTGAAGA-AGTAGATTTGGTGTCTCTGTATTAGACGGGG
1 AGCAGATCGAAGATAACAAATTTGGCGTCTCTGTATTAGACGGGG
12936780 AGCAGATCGAAGATAACAAATTTGGCGTCTCTGTATTAGACGGGG
1 AGCAGATCGAAGATAACAAATTTGGCGTCTCTGTATTAGACGGGG
*
12936825 AGCAGATCAAAGATA
1 AGCAGATCGAAGATA
12936840 GCAGATATCG
Statistics
Matches: 128, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
44 38 0.30
45 89 0.70
46 1 0.01
ACGTcount: A:0.33, C:0.14, G:0.28, T:0.25
Consensus pattern (45 bp):
AGCAGATCGAAGATAACAAATTTGGCGTCTCTGTATTAGACGGGG
Found at i:12936777 original size:89 final size:89
Alignment explanation
Indices: 12936663--12936831 Score: 277
Period size: 89 Copynumber: 1.9 Consensus size: 89
12936653 CCAAGATGAC
12936663 AGATTTGGCATCTCTGTATTAGACGGGGAGCAAATC-AGAGATAACAAATTTGGCATCTCTGTAT
1 AGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGA-AGATAACAAATTTGGCATCTCTGTAT
12936727 TAGACGGAGAGCAGATTGAAGAAGT
65 TAGACGGAGAGCAGATTGAAGAAGT
** * *
12936752 AGATTTGGTGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACAAATTTGGCGTCTCTGTATT
1 AGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAAATTTGGCATCTCTGTATT
*
12936817 AGACGGGGAGCAGAT
66 AGACGGAGAGCAGAT
12936832 CAAAGATAGC
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
89 73 0.99
90 1 0.01
ACGTcount: A:0.31, C:0.14, G:0.29, T:0.27
Consensus pattern (89 bp):
AGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAAATTTGGCATCTCTGTATT
AGACGGAGAGCAGATTGAAGAAGT
Found at i:12936875 original size:89 final size:89
Alignment explanation
Indices: 12936646--12936850 Score: 223
Period size: 89 Copynumber: 2.3 Consensus size: 89
12936636 TTTACATCGA
* * * ** * * *
12936646 AGCAGATCCAAGATGACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATC-AGAGATAACAA
1 AGCAGATCAAAGAAG-CAGATTCGGTGTCTCTGTATTAGACGGGAAACAGATCGA-AGATAACAA
12936710 ATTTGGCATCTCTGTATTAGACGGAG
64 ATTTGGCATCTCTGTATTAGACGGAG
** * * * *
12936736 AGCAGATTGAAGAAGTAGATTTGGTGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACAAAT
1 AGCAGATCAAAGAAGCAGATTCGGTGTCTCTGTATTAGACGGGAAACAGATCGAAGATAACAAAT
* *
12936801 TTGGCGTCTCTGTATTAGACGGGG
66 TTGGCATCTCTGTATTAGACGGAG
12936825 AGCAGATCAAAGATAGCAGATATCGG
1 AGCAGATCAAAGA-AGCAGAT-TCGG
12936851 CTTCCTGAGT
Statistics
Matches: 99, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
89 77 0.78
90 19 0.19
91 3 0.03
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.24
Consensus pattern (89 bp):
AGCAGATCAAAGAAGCAGATTCGGTGTCTCTGTATTAGACGGGAAACAGATCGAAGATAACAAAT
TTGGCATCTCTGTATTAGACGGAG
Found at i:12937293 original size:17 final size:19
Alignment explanation
Indices: 12937196--12937286 Score: 143
Period size: 19 Copynumber: 4.9 Consensus size: 19
12937186 ATAATCTTCA
12937196 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
12937215 ATGATATACAATCTTAGAT
1 ATGATATGCAATCTTAGAT
12937234 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
12937251 ATGAT-TGCAATATTAGAT
1 ATGATATGCAATCTTAGAT
12937269 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
12937287 AGATATGATT
Statistics
Matches: 66, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
17 16 0.24
18 15 0.23
19 35 0.53
ACGTcount: A:0.40, C:0.10, G:0.14, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:12937312 original size:22 final size:22
Alignment explanation
Indices: 12937196--12937309 Score: 78
Period size: 19 Copynumber: 5.8 Consensus size: 22
12937186 ATAATCTTCA
12937196 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
*
12937215 ATGATATACAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
12937234 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
*
12937251 ATGAT-TGCAATATT---AGAT
1 ATGATATGCAATCTTAGAAGAT
12937269 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
12937291 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
12937310 GATTTAATTT
Statistics
Matches: 83, Mismatches: 5, Indels: 10
0.85 0.05 0.10
Matches are distributed among these distances:
17 16 0.19
18 15 0.18
19 32 0.39
22 8 0.10
23 12 0.14
ACGTcount: A:0.39, C:0.09, G:0.15, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:12941887 original size:42 final size:40
Alignment explanation
Indices: 12941840--12941962 Score: 142
Period size: 43 Copynumber: 3.0 Consensus size: 40
12941830 ATTGTAAATC
* *
12941840 CAACAACCCAAGTTTATCATCTCCATTTTTAAATTCTTTTTT
1 CAACAATCCAAGATTATC-TCTCC-TTTTTAAATTCTTTTTT
*
12941882 CAACAATCCAAGATTATCTTCTCCTCTTTTTAAATACTTTTTT
1 CAACAATCCAAGATTATC-TCT-C-CTTTTTAAATTCTTTTTT
* *
12941925 CTACAATCTAAGATTATCT-T-CTTTTTAAATTCTTTTTT
1 CAACAATCCAAGATTATCTCTCCTTTTTAAATTCTTTTTT
12941963 TCTAGGATAA
Statistics
Matches: 72, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
38 17 0.24
41 1 0.01
42 20 0.28
43 33 0.46
44 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.02, T:0.49
Consensus pattern (40 bp):
CAACAATCCAAGATTATCTCTCCTTTTTAAATTCTTTTTT
Found at i:12956165 original size:39 final size:38
Alignment explanation
Indices: 12956085--12956237 Score: 180
Period size: 38 Copynumber: 4.1 Consensus size: 38
12956075 NNNNNNNNNN
12956085 CGAA-GCATTTTGTGCGAGTTACTATATCCGGCTAAGT-C
1 CGAAGGCA-TTTGTGCGAG-TACTATATCCGGCTAAGTCC
12956123 CGAAGGCATTTGTGCGAGTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTACTATATCC-GGCTAAGTCC
*
12956162 CGAAGGCATTTGTGCGA-TAC-AT-TCCGGGCTAAGACC
1 CGAAGGCATTTGTGCGAGTACTATATCC-GGCTAAGTCC
*
12956198 CGAAGGCA-TT-TGCGAG-AGCTATAT-CGGCTAAATCC
1 CGAAGGCATTTGTGCGAGTA-CTATATCCGGCTAAGTCC
12956233 CGAAG
1 CGAAG
12956238 TATTGGTTTG
Statistics
Matches: 105, Mismatches: 3, Indels: 17
0.84 0.02 0.14
Matches are distributed among these distances:
34 6 0.06
35 16 0.15
36 24 0.23
37 13 0.12
38 25 0.24
39 21 0.20
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (38 bp):
CGAAGGCATTTGTGCGAGTACTATATCCGGCTAAGTCC
Found at i:12956200 original size:36 final size:38
Alignment explanation
Indices: 12956085--12956209 Score: 170
Period size: 36 Copynumber: 3.3 Consensus size: 38
12956075 NNNNNNNNNN
*
12956085 CGAA-GCATTTTGTGCGAGTTACTATATCC-GGCTAAGTC
1 CGAAGGCA-TTTGTGCGAG-TACTATATCCGGGCTAAGCC
12956123 CGAAGGCATTTGTGCGAGTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTACTATATCCGGGCTAAG-CC
12956162 CGAAGGCATTTGTGCGA-TAC-AT-TCCGGGCTAAGACC
1 CGAAGGCATTTGTGCGAGTACTATATCCGGGCTAAG-CC
12956198 CGAAGGCATTTG
1 CGAAGGCATTTG
12956210 CGAGAGCTAT
Statistics
Matches: 82, Mismatches: 2, Indels: 8
0.89 0.02 0.09
Matches are distributed among these distances:
36 25 0.30
37 12 0.15
38 24 0.29
39 21 0.26
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (38 bp):
CGAAGGCATTTGTGCGAGTACTATATCCGGGCTAAGCC
Found at i:12963853 original size:39 final size:40
Alignment explanation
Indices: 12963799--12963934 Score: 190
Period size: 39 Copynumber: 3.5 Consensus size: 40
12963789 CGGATGATAA
12963799 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
12963838 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATCT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
12963877 CCGGGCTAAGTCCCGAAGGCAGTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
12963917 -CTGGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
12963935 TACTTGGTTG
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
39 67 0.75
40 22 0.25
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:12967918 original size:37 final size:36
Alignment explanation
Indices: 12967859--12968050 Score: 157
Period size: 35 Copynumber: 5.3 Consensus size: 36
12967849 TCCTCGTTCA
* *
12967859 AATGCCTTCGGGACATAGCCCGGTTTAGTAACTCACAC
1 AATGCCTTC-GGAC-TAACCCGGTTTAGTAACTCGCAC
**
12967897 AATGCCTTCGGACATAACCCGGATTTAACAACTCGCAC
1 AATGCCTTCGGAC-TAACCCGG-TTTAGTAACTCGCAC
*
12967935 GAATGCCTTCGGACTAACCCGGATTAGT-ACTCGCAC
1 -AATGCCTTCGGACTAACCCGGTTTAGTAACTCGCAC
* * *
12967971 AA-GCC-TCGGGCTAACCCGGAATT-GTATCTCGCAC
1 AATGCCTTCGGACTAACCCGG-TTTAGTAACTCGCAC
* *
12968005 AAAT-CC-TCGGGCTAACCCGGATTT-GTATC-CGCAC
1 -AATGCCTTCGGACTAACCCGG-TTTAGTAACTCGCAC
*
12968039 AAAGCCTTCGGA
1 AATGCCTTCGGA
12968051 TCTTATCCGG
Statistics
Matches: 134, Mismatches: 12, Indels: 19
0.81 0.07 0.12
Matches are distributed among these distances:
33 17 0.13
34 20 0.15
35 32 0.24
36 8 0.06
37 15 0.11
38 29 0.22
39 13 0.10
ACGTcount: A:0.27, C:0.31, G:0.21, T:0.22
Consensus pattern (36 bp):
AATGCCTTCGGACTAACCCGGTTTAGTAACTCGCAC
Found at i:12967947 original size:39 final size:38
Alignment explanation
Indices: 12967859--12967959 Score: 134
Period size: 38 Copynumber: 2.7 Consensus size: 38
12967849 TCCTCGTTCA
* **
12967859 AATGCCTTCGGGACATAGCCCGG-TTTAGTAACTCACAC
1 AATGCCTTC-GGACATAACCCGGATTTAACAACTCACAC
*
12967897 AATGCCTTCGGACATAACCCGGATTTAACAACTCGCAC
1 AATGCCTTCGGACATAACCCGGATTTAACAACTCACAC
12967935 GAATGCCTTCGGAC-TAACCCGGATT
1 -AATGCCTTCGGACATAACCCGGATT
12967960 AGTACTCGCA
Statistics
Matches: 57, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
37 12 0.21
38 32 0.56
39 13 0.23
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.23
Consensus pattern (38 bp):
AATGCCTTCGGACATAACCCGGATTTAACAACTCACAC
Found at i:12975968 original size:40 final size:40
Alignment explanation
Indices: 12975853--12975977 Score: 202
Period size: 40 Copynumber: 3.2 Consensus size: 40
12975843 CAACCGGAAT
* *
12975853 CCTTCGGGACTTAACCCGG-ATTTAGTATCTCGCACAAAGG
1 CCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCACAAATG
12975893 CCTTC-GGGCTTAACCCGGAA-TTGTATCTCGCACAAATG
1 CCTTCGGGGCTTAACCCGGAATTTGTATCTCGCACAAATG
12975931 CCTTCGGGGCTTAACCCGGAATTTGTATCTCGCACAAATG
1 CCTTCGGGGCTTAACCCGGAATTTGTATCTCGCACAAATG
12975971 CCTTCGG
1 CCTTCGG
12975978 ATCTTAGTCC
Statistics
Matches: 80, Mismatches: 2, Indels: 6
0.91 0.02 0.07
Matches are distributed among these distances:
38 20 0.25
39 29 0.36
40 31 0.39
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.26
Consensus pattern (40 bp):
CCTTCGGGGCTTAACCCGGAATTTGTATCTCGCACAAATG
Found at i:12979519 original size:15 final size:16
Alignment explanation
Indices: 12979499--12979538 Score: 55
Period size: 17 Copynumber: 2.5 Consensus size: 16
12979489 GTTATTGTCT
12979499 TTTAGTTGAG-ATTGA
1 TTTAGTTGAGAATTGA
12979514 TTTAGTTGAGTAATTGA
1 TTTAGTTGAG-AATTGA
*
12979531 TTGAGTTG
1 TTTAGTTG
12979539 TATGTATGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 10 0.45
17 12 0.55
ACGTcount: A:0.25, C:0.00, G:0.28, T:0.47
Consensus pattern (16 bp):
TTTAGTTGAGAATTGA
Found at i:12981968 original size:47 final size:47
Alignment explanation
Indices: 12981913--12982077 Score: 258
Period size: 47 Copynumber: 3.5 Consensus size: 47
12981903 TGGCACTAAT
*
12981913 ACAAGGATACCATGTAAGGCCATGTTTGGAACATGGCATTTGGTAAG
1 ACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAG
* *
12981960 ACAAGGATATCATGTAAGACCATGTTGGGAACATGGCATTTGGTAAG
1 ACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAG
* *
12982007 ACAAGGATACCATGTAAGACCATGTTTTGAACATGGCATTTGGTAAT
1 ACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAG
* * *
12982054 ATAAAGATATCATGTAAGACCATG
1 ACAAGGATACCATGTAAGACCATG
12982078 CCAAGACATG
Statistics
Matches: 108, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 108 1.00
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (47 bp):
ACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAG
Found at i:12982121 original size:54 final size:55
Alignment explanation
Indices: 12982062--12982202 Score: 153
Period size: 54 Copynumber: 2.6 Consensus size: 55
12982052 ATATAAAGAT
*
12982062 ATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-GTATAAGAC-AAGGAA
1 ATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTACTATAAGACAAAGG-A
** * * * *
12982116 ATCATGTAAGACCATTTCAAGACATAGG-ATTTATGAGTTACTATAAGGCAAAGGT
1 ATCATGTAAGACCATGCCAAGACAT-GGCATTGATAAGTTACTATAAGACAAAGGA
** *
12982171 CCCATGTAAGACCATGCCAAGGCATGGCATTG
1 ATCATGTAAGACCATGCCAAGACATGGCATTG
12982203 GTGAGTTCAT
Statistics
Matches: 70, Mismatches: 13, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
54 34 0.49
55 32 0.46
56 4 0.06
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.24
Consensus pattern (55 bp):
ATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTACTATAAGACAAAGGA
Found at i:12982208 original size:55 final size:55
Alignment explanation
Indices: 12982064--12982249 Score: 175
Period size: 55 Copynumber: 3.4 Consensus size: 55
12982054 ATAAAGATAT
* * * *
12982064 CATGTAAGACCATGCCAAGACATGGCATTGATAAGTTGTATAAGAC-AAGGAAAT
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAAGGAAAC
** * **
12982118 CATGTAAGACCATTTCAAGACATAGG-ATTTATGAGTTACTATAAGGCAAAGG-TCC
1 CATGTAAGACCATGCCAAGACAT-GGCATTGATGAGTT-CTATAAGGCAAAGGAAAC
* * *
12982173 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC-AAGGATAC
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAAGGAAAC
* * **
12982226 CACGTAAAACCATGTGAAGACATG
1 CATGTAAGACCATGCCAAGACATG
12982250 AAAATGGTAA
Statistics
Matches: 107, Mismatches: 20, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
52 4 0.04
53 28 0.26
54 33 0.31
55 38 0.36
56 4 0.04
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.23
Consensus pattern (55 bp):
CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAAGGAAAC
Found at i:12985647 original size:27 final size:27
Alignment explanation
Indices: 12985616--12985791 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
12985606 TAAATTGTAC
12985616 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
12985643 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
12985669 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
12985697 GGCACTAAGT-TGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
12985724 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
12985751 AGCACTAAGTGTGC-AGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
12985777 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
12985792 GACTCAATAT
Statistics
Matches: 125, Mismatches: 19, Indels: 10
0.81 0.12 0.06
Matches are distributed among these distances:
26 27 0.22
27 93 0.74
28 5 0.04
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:12993815 original size:27 final size:27
Alignment explanation
Indices: 12993784--12993961 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
12993774 TAAATTGTAC
12993784 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
12993811 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
12993837 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
12993865 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
12993893 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
12993920 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
12993947 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
12993962 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:12993898 original size:82 final size:81
Alignment explanation
Indices: 12993785--12993940 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
12993775 AAATTGTACA
* *
12993785 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
12993849 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
12993866 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
12993931 TGCGAGTTGA
65 TGCGAATTGA
12993941 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:12993952 original size:82 final size:81
Alignment explanation
Indices: 12993781--12993961 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
12993771 GATTAAATTG
* *
12993781 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
12993846 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
12993862 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
12993926 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
12993944 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
12993962 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:12999546 original size:46 final size:46
Alignment explanation
Indices: 12999484--12999571 Score: 140
Period size: 46 Copynumber: 1.9 Consensus size: 46
12999474 CATTGGGTGG
* * *
12999484 TATGTGAGCCACTGTAAGACATGTCTGGGACATGCATTGGCCACGT
1 TATGAGAGCCAATGTAAGACATGTCTGGGACATGCATCGGCCACGT
*
12999530 TATGAGAGCCAATGTAAGATATGTCTGGGACATGCATCGGCC
1 TATGAGAGCCAATGTAAGACATGTCTGGGACATGCATCGGCC
12999572 TTCGGATATA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (46 bp):
TATGAGAGCCAATGTAAGACATGTCTGGGACATGCATCGGCCACGT
Found at i:12999687 original size:49 final size:49
Alignment explanation
Indices: 12999631--12999809 Score: 168
Period size: 49 Copynumber: 3.7 Consensus size: 49
12999621 TGTTGTGTGT
*
12999631 CAGTGTAAGACCTGGT-TGGGACATGGCATCGACAC-CGATAGATGAGAGC
1 CAGTGTAAGACCT-GTCTGGGACATGGCATCGAC-CTCGATAGATGAAAGC
* * *
12999680 CAGTGTAAGACCTATCTGGGACATGGCATCGACCTCGATATATGAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGC
* * * * * ** ***
12999729 CAGTGTAAAACCTGTCTGGGACACGGTATTGACTTTAAT-G-TTCTAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGC
*
12999776 CAGTGTAAGACCATGTCTGGAACATGGCATCGAC
1 CAGTGTAAGACC-TGTCTGGGACATGGCATCGAC
12999810 ATCTTATCCC
Statistics
Matches: 105, Mismatches: 22, Indels: 7
0.78 0.16 0.05
Matches are distributed among these distances:
47 14 0.13
48 19 0.18
49 72 0.69
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGC
Found at i:13006517 original size:40 final size:40
Alignment explanation
Indices: 13006424--13006640 Score: 271
Period size: 40 Copynumber: 5.5 Consensus size: 40
13006414 AAGCCAAGTA
* * *
13006424 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
13006462 CCTTCGGGACGTAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
13006502 CCTTCGGGACTTAGCCCGGATATGGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
13006542 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * **
13006582 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGTAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
13006622 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
13006641 TTATCATCCG
Statistics
Matches: 157, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
38 12 0.08
39 17 0.11
40 128 0.82
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:13014984 original size:30 final size:30
Alignment explanation
Indices: 13014926--13014984 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
13014916 ATATTCGGGA
* * **
13014926 CTAGGGGTAAAATGGTCATTTTGTCAAAGC
1 CTAGGGGCAAAATGGTAATTTTACCAAAGC
13014956 CTAGGGGCAAAATGGTAATTTTACCAAAG
1 CTAGGGGCAAAATGGTAATTTTACCAAAG
13014985 TTATAAATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (30 bp):
CTAGGGGCAAAATGGTAATTTTACCAAAGC
Found at i:13015375 original size:47 final size:45
Alignment explanation
Indices: 13015307--13015480 Score: 156
Period size: 46 Copynumber: 3.8 Consensus size: 45
13015297 GAGTTATTGT
* * *
13015307 GAGCTAGTGCAAGACATGTCTGGGACATGCATCGACCATATTA-TGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCG-CCAT-TGAGCGA
* * *
13015353 GAGCCAGTGTAAGACCATGTCTGGGGCATGACATCGGCATTGAGGCGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACATG-CATCGCCATTGA-GCGA
* * *
13015401 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGGC-TCGAGACGTA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATC-GCCATTGAG-CG-A
* *
13015448 -AGCCAGTGTAAGACATGTCTGGAACATGCATCG
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCG
13015481 GCTACGAGAT
Statistics
Matches: 108, Mismatches: 13, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
45 2 0.02
46 52 0.48
47 35 0.32
48 19 0.18
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (45 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGCCATTGAGCGA
Found at i:13015456 original size:46 final size:48
Alignment explanation
Indices: 13015352--13015577 Score: 175
Period size: 46 Copynumber: 4.8 Consensus size: 48
13015342 CCATATTATG
* * *
13015352 AGAGCCAGTGTAAGACCATGTCTGGGGCATGACATC-GGCATTGAGGCG-
1 AGAGCCAGTGTAAGACCATGTCTGGGACATG-CATCGGGC-TCGAGACGT
* *
13015400 AGTGCTAGTGTAAGA-CATGTCTGGGACATGCATCGGGCTCGAGACGT
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGCATCGGGCTCGAGACGT
*
13015447 A-AGCCAGTGTAAGA-CATGTCTGGAACATGCATC-GGCTACGAGA--T
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGCATCGGGCT-CGAGACGT
* * * * * * * *
13015491 -GTGTCAGTATAAGACCTTGTCTGGGATATGGCATCGGTGC-AGATATGCT
1 AGAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGG-GCTCGAGACG-T
**
13015540 AGAGCTTGTGTAAGACCATGTCTGGGACATGGCATCGG
1 AGAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGG
13015578 CATCTGTACC
Statistics
Matches: 143, Mismatches: 23, Indels: 22
0.76 0.12 0.12
Matches are distributed among these distances:
44 11 0.08
45 15 0.10
46 52 0.36
47 19 0.13
48 15 0.10
49 1 0.01
50 30 0.21
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.23
Consensus pattern (48 bp):
AGAGCCAGTGTAAGACCATGTCTGGGACATGCATCGGGCTCGAGACGT
Found at i:13017573 original size:21 final size:20
Alignment explanation
Indices: 13017544--13017584 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
13017534 ACAAAACTTG
13017544 TATAACTATCATCAAACATT
1 TATAACTATCATCAAACATT
*
13017564 TATAATCTATCATCAATCATT
1 TATAA-CTATCATCAAACATT
13017585 AAAATACATG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.41, C:0.20, G:0.00, T:0.39
Consensus pattern (20 bp):
TATAACTATCATCAAACATT
Found at i:13028437 original size:17 final size:17
Alignment explanation
Indices: 13028415--13028448 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
13028405 CCAATAAGTA
13028415 AGGAGGAAAACCTATGT
1 AGGAGGAAAACCTATGT
13028432 AGGAGGAAAACCTATGT
1 AGGAGGAAAACCTATGT
13028449 TCTTTCTAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.12, G:0.29, T:0.18
Consensus pattern (17 bp):
AGGAGGAAAACCTATGT
Found at i:13030007 original size:14 final size:14
Alignment explanation
Indices: 13029988--13030018 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
13029978 TATAAACATG
13029988 AATTGAATGAATTC
1 AATTGAATGAATTC
13030002 AATTGAATGAATTC
1 AATTGAATGAATTC
13030016 AAT
1 AAT
13030019 CAAAGCATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.45, C:0.06, G:0.13, T:0.35
Consensus pattern (14 bp):
AATTGAATGAATTC
Found at i:13065375 original size:13 final size:13
Alignment explanation
Indices: 13065357--13065386 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
13065347 AATGGAACAT
13065357 AAAATAAAAATAA
1 AAAATAAAAATAA
13065370 AAAATAAAAATAA
1 AAAATAAAAATAA
13065383 AAAA
1 AAAA
13065387 AATTTTGAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (13 bp):
AAAATAAAAATAA
Found at i:13071791 original size:31 final size:30
Alignment explanation
Indices: 13071753--13071822 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 30
13071743 GTCCAGATGT
13071753 CACACGCCCATGTGG-TGTGTCTGTGTGGGCC
1 CACACGCCCATGTGGATGT-TC-GTGTGGGCC
* *
13071784 CACACGCCCGTGTGGCATGTTCGTGTGGGCT
1 CACACGCCCATGTGG-ATGTTCGTGTGGGCC
13071815 CACACGCC
1 CACACGCC
13071823 TAGTTTGGTT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
31 30 0.86
32 2 0.06
33 3 0.09
ACGTcount: A:0.11, C:0.33, G:0.33, T:0.23
Consensus pattern (30 bp):
CACACGCCCATGTGGATGTTCGTGTGGGCC
Found at i:13084766 original size:40 final size:40
Alignment explanation
Indices: 13084668--13084970 Score: 396
Period size: 40 Copynumber: 7.6 Consensus size: 40
13084658 TCCTCGTTCA
* * * * *
13084668 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
13084707 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
13084747 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
13084787 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
13084827 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
13084867 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
13084907 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
13084947 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
13084971 CAGCATTCAA
Statistics
Matches: 240, Mismatches: 20, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 37 0.15
40 195 0.81
41 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:13100925 original size:22 final size:22
Alignment explanation
Indices: 13100897--13100966 Score: 61
Period size: 22 Copynumber: 3.0 Consensus size: 22
13100887 TGGTTTGTTG
13100897 CCTTTGTTTCATACCCTGGTAT
1 CCTTTGTTTCATACCCTGGTAT
** * *
13100919 CCTTTGTGGCATATCC-GGTTTGTT
1 CCTTTGTTTCATACCCTGG--T-AT
13100943 GCCTTTGTTTCATACCCTGGTAT
1 -CCTTTGTTTCATACCCTGGTAT
13100966 C
1 C
13100967 TTTTATGGCA
Statistics
Matches: 35, Mismatches: 8, Indels: 10
0.66 0.15 0.19
Matches are distributed among these distances:
21 2 0.06
22 14 0.40
23 2 0.06
24 2 0.06
25 13 0.37
26 2 0.06
ACGTcount: A:0.11, C:0.26, G:0.19, T:0.44
Consensus pattern (22 bp):
CCTTTGTTTCATACCCTGGTAT
Found at i:13100926 original size:47 final size:47
Alignment explanation
Indices: 13100872--13100995 Score: 185
Period size: 47 Copynumber: 2.6 Consensus size: 47
13100862 TTCTAGTTGG
*
13100872 CCTTTGTGGCATATTTGGTTTGTTGCCTTTGTTTCATACCCTGGTAT
1 CCTTTGTGGCATATTCGGTTTGTTGCCTTTGTTTCATACCCTGGTAT
*
13100919 CCTTTGTGGCATATCCGGTTTGTTGCCTTTGTTTCATACCCTGGTAT
1 CCTTTGTGGCATATTCGGTTTGTTGCCTTTGTTTCATACCCTGGTAT
* * * * *
13100966 CTTTTATGGCATATTCAGTATGTTTCCTTT
1 CCTTTGTGGCATATTCGGTTTGTTGCCTTT
13100996 ATGGCATACT
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.12, C:0.20, G:0.19, T:0.48
Consensus pattern (47 bp):
CCTTTGTGGCATATTCGGTTTGTTGCCTTTGTTTCATACCCTGGTAT
Found at i:13100947 original size:25 final size:25
Alignment explanation
Indices: 13100871--13100950 Score: 69
Period size: 25 Copynumber: 3.3 Consensus size: 25
13100861 ATTCTAGTTG
**
13100871 GCCTTTGTGGCATATTTGGTTTGTT
1 GCCTTTGTGGCATATCCGGTTTGTT
** * *
13100896 GCCTTTGTTTCATACCCTGG--T-AT
1 GCCTTTGTGGCATATCC-GGTTTGTT
13100919 -CCTTTGTGGCATATCCGGTTTGTT
1 GCCTTTGTGGCATATCCGGTTTGTT
13100943 GCCTTTGT
1 GCCTTTGT
13100951 TTCATACCCT
Statistics
Matches: 40, Mismatches: 10, Indels: 10
0.67 0.17 0.17
Matches are distributed among these distances:
21 2 0.05
22 13 0.32
23 2 0.05
24 2 0.05
25 19 0.47
26 2 0.05
ACGTcount: A:0.09, C:0.20, G:0.24, T:0.47
Consensus pattern (25 bp):
GCCTTTGTGGCATATCCGGTTTGTT
Found at i:13101022 original size:22 final size:21
Alignment explanation
Indices: 13100992--13101043 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
13100982 AGTATGTTTC
* *
13100992 CTTTATGGCATACTTTGATAG
1 CTTTGTGGCATACTCTGATAG
*
13101013 TCTTTGTGGCGTACTCTGATAG
1 -CTTTGTGGCATACTCTGATAG
13101035 CTTTTGTGG
1 C-TTTGTGG
13101044 TATATTCAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 1 0.04
22 25 0.96
ACGTcount: A:0.15, C:0.15, G:0.25, T:0.44
Consensus pattern (21 bp):
CTTTGTGGCATACTCTGATAG
Found at i:13106511 original size:57 final size:57
Alignment explanation
Indices: 13106392--13106532 Score: 144
Period size: 57 Copynumber: 2.5 Consensus size: 57
13106382 TTTATAAAAT
** * * * *
13106392 AGGATTACCAGTCCAGGCTAAATCCCATCTTTAGCATTCGCTCTTAAAAGCTTATTC
1 AGGATTACCAGTCCAGGCTAAATCCCATCGATAACATTAGCTCTTAAAAGCCTACTC
* * *
13106449 AGGATTACCAGTCCAGGCTAAATCCCTTCGATAACGTTAGCTCATT-AGAGCCTACT-
1 AGGATTACCAGTCCAGGCTAAATCCCATCGATAACATTAGCTC-TTAAAAGCCTACTC
* *
13106505 ATGGATTACCCGTCCGGGCTAAA-CCCAT
1 A-GGATTACCAGTCCAGGCTAAATCCCAT
13106533 TTCATGACAT
Statistics
Matches: 70, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
56 5 0.07
57 63 0.90
58 2 0.03
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.28
Consensus pattern (57 bp):
AGGATTACCAGTCCAGGCTAAATCCCATCGATAACATTAGCTCTTAAAAGCCTACTC
Found at i:13110174 original size:46 final size:46
Alignment explanation
Indices: 13110096--13110187 Score: 118
Period size: 46 Copynumber: 2.0 Consensus size: 46
13110086 AGTTTTGCCA
**
13110096 AGGTTCTGAGCTTCTGCATAGTTTGCTGACTCAAGAATAT-AGGAAT
1 AGGTTCTGAGCTTCTGCATAGTTTGCAAACTCAAGAAT-TCAGGAAT
13110142 AGGTTCTGAGC-TCTTGCATA-TGTTGCAAACTCAAGAATTCAGGAAT
1 AGGTTCTGAGCTTC-TGCATAGT-TTGCAAACTCAAGAATTCAGGAAT
13110188 GGATTTCAAG
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
45 4 0.10
46 37 0.90
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (46 bp):
AGGTTCTGAGCTTCTGCATAGTTTGCAAACTCAAGAATTCAGGAAT
Found at i:13111102 original size:27 final size:28
Alignment explanation
Indices: 13111063--13111118 Score: 87
Period size: 27 Copynumber: 2.0 Consensus size: 28
13111053 TTAGTATTCA
13111063 TCATATATATATACACATAACATAACAT
1 TCATATATATATACACATAACATAACAT
* *
13111091 TCAT-TATTTATACACATAACATAGCAT
1 TCATATATATATACACATAACATAACAT
13111118 T
1 T
13111119 TATCATTAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.85
28 4 0.15
ACGTcount: A:0.45, C:0.18, G:0.02, T:0.36
Consensus pattern (28 bp):
TCATATATATATACACATAACATAACAT
Found at i:13113175 original size:39 final size:40
Alignment explanation
Indices: 13112955--13113142 Score: 317
Period size: 40 Copynumber: 4.7 Consensus size: 40
13112945 TATTTGGATG
* *
13112955 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
13112995 A-ATTCCGGGCTAAG-CCTGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
13113034 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
13113074 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
13113114 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
13113143 AGCAAGTAGC
Statistics
Matches: 139, Mismatches: 6, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
39 34 0.24
40 105 0.76
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:13117027 original size:49 final size:49
Alignment explanation
Indices: 13116916--13117062 Score: 190
Period size: 49 Copynumber: 3.0 Consensus size: 49
13116906 TACATGTATT
* *
13116916 CTCATATGAGCT-ATGAATCGGTATGCTCTCACGAGCTAT-AAATCGATAAG
1 CTCATATGAGCTGA-GAATCGGTAAGCTCTCACGAG--ATGAAATCGGTAAG
13116966 CTCATATGAGCTGAGAATCGGTAAGCTCTCACGAGATGAAATCGGTAAG
1 CTCATATGAGCTGAGAATCGGTAAGCTCTCACGAGATGAAATCGGTAAG
* ** * *
13117015 CTCATACGAGCTGAGAATCAATAAGCTCTCACGAGCTGAAATCAGTAA
1 CTCATATGAGCTGAGAATCGGTAAGCTCTCACGAGATGAAATCGGTAA
13117063 TCCCTAATGA
Statistics
Matches: 88, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
48 2 0.02
49 53 0.60
50 32 0.36
51 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (49 bp):
CTCATATGAGCTGAGAATCGGTAAGCTCTCACGAGATGAAATCGGTAAG
Found at i:13117052 original size:25 final size:24
Alignment explanation
Indices: 13116931--13117057 Score: 123
Period size: 25 Copynumber: 5.2 Consensus size: 24
13116921 ATGAGCTATG
* * *
13116931 AATCGGTATGCTCTCACGAGCTATA
1 AATCGATAAGCTCTCACGAGCT-GA
*
13116956 AATCGATAAGCTCAT-ATGAGCTGA
1 AATCGATAAGCTC-TCACGAGCTGA
* *
13116980 GAATCGGTAAGCTCTCACGAGATGA
1 -AATCGATAAGCTCTCACGAGCTGA
*
13117005 AATCGGTAAGCTCAT-ACGAGCTGA
1 AATCGATAAGCTC-TCACGAGCTGA
*
13117029 GAATCAATAAGCTCTCACGAGCTGA
1 -AATCGATAAGCTCTCACGAGCTGA
13117054 AATC
1 AATC
13117058 AGTAATCCCT
Statistics
Matches: 86, Mismatches: 10, Indels: 13
0.79 0.09 0.12
Matches are distributed among these distances:
24 28 0.33
25 57 0.66
26 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.23
Consensus pattern (24 bp):
AATCGATAAGCTCTCACGAGCTGA
Found at i:13123719 original size:37 final size:37
Alignment explanation
Indices: 13123660--13123768 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
13123650 AGCTCAGACG
* * *
13123660 AAATCTCCACACGAAGTTATCGGGTCTTGCCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
13123697 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
13123734 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
13123769 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.26, C:0.31, G:0.20, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:13123972 original size:50 final size:49
Alignment explanation
Indices: 13123914--13124196 Score: 432
Period size: 48 Copynumber: 5.8 Consensus size: 49
13123904 GCACATCGCC
*
13123914 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-TA
* *
13123964 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCT-
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCTA
13124012 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-TA
* * *
13124062 TATATATTTCACATT-GACCATTCAGCTTTACCACATATGCATATCTC-A
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCTA
13124110 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-A
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCTA
*
13124158 TACACATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
13124197 TGCATGTTCA
Statistics
Matches: 215, Mismatches: 12, Indels: 14
0.89 0.05 0.06
Matches are distributed among these distances:
48 125 0.58
49 6 0.03
50 84 0.39
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.36
Consensus pattern (49 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCTA
Found at i:13124041 original size:98 final size:98
Alignment explanation
Indices: 13123900--13124195 Score: 490
Period size: 98 Copynumber: 3.0 Consensus size: 98
13123890 CGGCCACAAT
* * * *
13123900 ATATGCACATCGCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAT
1 ATATGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAT
13123965 ATATATTTCACATTGACCATTCGGCTTTACCAC
66 ATATATTTCACATTGACCATTCGGCTTTACCAC
*
13123998 ATATGCATATCTCTTACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAT
1 ATATGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAT
*
13124063 ATATATTTCACATTGACCATTCAGCTTTACCAC
66 ATATATTTCACATTGACCATTCGGCTTTACCAC
13124096 ATATGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--AT
1 ATATGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAT
* *
13124159 ACACATTTCACATT-AGCCATTCGGCTTTACCAC
66 ATATATTTCACATTGA-CCATTCGGCTTTACCAC
13124192 ATAT
1 ATAT
13124196 ATGCATGTTC
Statistics
Matches: 188, Mismatches: 9, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
95 1 0.01
96 34 0.18
98 153 0.81
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.35
Consensus pattern (98 bp):
ATATGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAT
ATATATTTCACATTGACCATTCGGCTTTACCAC
Found at i:13124245 original size:47 final size:47
Alignment explanation
Indices: 13124166--13124359 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
13124156 CATACACATT
* * * *
13124166 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
13124213 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
13124260 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * ** *
13124307 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
13124354 TCACAT
1 TCACAT
13124360 AAAATCCTAA
Statistics
Matches: 132, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 132 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:13124286 original size:22 final size:22
Alignment explanation
Indices: 13124259--13124330 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
13124249 GCTCACATTC
13124259 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
13124281 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
13124305 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
13124328 ATC
1 ATC
13124331 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:13124353 original size:94 final size:93
Alignment explanation
Indices: 13123930--13124359 Score: 315
Period size: 98 Copynumber: 4.5 Consensus size: 93
13123920 TTTCACACTA
* * *
13123930 GCCATTCGGCTTTA-CCACATATACATATCTCATATATATATTTCACATT-GACCATTCGGCTTT
1 GCCATTCGGCCTTATCCACATATACATAT-TCATAT-T-CA--TCACATTAG-CCATTCGGCCTT
* * *
13123993 ACCAC--ATATGCATATCTCTTACATAT-TTCACATTA
60 ACCACATATATGCATGT-TC--ACAT-TCATCACATTG
* * * *
13124028 GCCATTCGGCTTTA-CCACATATACATATCTCATATATATATTTCACATT-GACCATTCAGCTTT
1 GCCATTCGGCCTTATCCACATATACATAT-TCATAT-T-CA--TCACATTAG-CCATTCGGCCTT
* * *
13124091 ACCAC--ATATGCATATCTCATACATAT-TTCACATTA
60 ACCACATATATGCATGT-TC--ACAT-TCATCACATTG
* ** *
13124126 GCCATTCGGCTTTA-CCACATATACATATCTCATACACATTTCACATTAGCCATTCGGCTTTACC
1 GCCATTCGGCCTTATCCACATATACATAT-TCATATTCA--TCACATTAGCCATTCGGCCTTACC
* *
13124190 ACATATATGCATGTTCATATTCACCACATTG
63 ACATATATGCATGTTCACATTCATCACATTG
* ** * * *
13124221 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCAC
1 GCCATTCGGCCTTATC-CACATATACATATTCATATTCATCACATTAGCCATTCGGCCTTACCAC
13124286 ATATATGCATGTTCACATTCATCACATTG
65 ATATATGCATGTTCACATTCATCACATTG
* *
13124315 GCCATTCGGCCTTATCTCATATATACACATTCATATTCATCACAT
1 GCCATTCGGCCTTATC-CACATATACATATTCATATTCATCACAT
13124360 AAAATCCTAA
Statistics
Matches: 296, Mismatches: 30, Indels: 16
0.87 0.09 0.05
Matches are distributed among these distances:
94 89 0.30
95 22 0.07
96 33 0.11
97 13 0.04
98 139 0.47
ACGTcount: A:0.29, C:0.27, G:0.09, T:0.35
Consensus pattern (93 bp):
GCCATTCGGCCTTATCCACATATACATATTCATATTCATCACATTAGCCATTCGGCCTTACCACA
TATATGCATGTTCACATTCATCACATTG
Found at i:13128249 original size:40 final size:40
Alignment explanation
Indices: 13128205--13128476 Score: 481
Period size: 40 Copynumber: 6.8 Consensus size: 40
13128195 CCAGCATGAT
* *
13128205 TGCTCTTCGGGACTTAGTCTGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
13128245 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
13128285 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
13128325 TGCTCTTTGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
13128365 TGCTCTTCGGGACTTAGCCCGAATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
13128405 AGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
13128445 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
13128477 CTCAATTCTC
Statistics
Matches: 221, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 221 1.00
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:13129850 original size:37 final size:37
Alignment explanation
Indices: 13129744--13129853 Score: 166
Period size: 37 Copynumber: 3.0 Consensus size: 37
13129734 AGCTCAGATG
* * * *
13129744 AAATCTCCACACGAAGTTATCGAGTCTTACCCAGAAA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGAAA
*
13129781 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGAAA
*
13129818 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGAA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGAA
13129854 TATATTTCCA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGAAA
Found at i:13130114 original size:98 final size:98
Alignment explanation
Indices: 13129998--13130278 Score: 489
Period size: 98 Copynumber: 2.9 Consensus size: 98
13129988 GCACATCGCC
*
13129998 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
13130063 GACCATTCGGCTTTACCACATATGCATATCTCA
66 GACCATTCGGCTTTACCACATATGCATATCTCA
13130096 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
13130161 GACCATTCGGCTTTACCACATATGCATATCTCA
66 GACCATTCGGCTTTACCACATATGCATATCTCA
* * *
13130194 TACATATTTCACATTAGCCATTCAGC-TTACCACATATACATATCTC--ATACACATTTCACATT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
13130256 -AGCCATTCGGCTTTACCACATAT
66 GA-CCATTCGGCTTTACCACATAT
13130279 ATGCATGTTC
Statistics
Matches: 178, Mismatches: 4, Indels: 5
0.95 0.02 0.03
Matches are distributed among these distances:
94 1 0.01
95 35 0.20
97 20 0.11
98 122 0.69
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.36
Consensus pattern (98 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
GACCATTCGGCTTTACCACATATGCATATCTCA
Found at i:13130122 original size:48 final size:48
Alignment explanation
Indices: 13129998--13130279 Score: 426
Period size: 50 Copynumber: 5.8 Consensus size: 48
13129988 GCACATCGCC
*
13129998 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
13130048 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
13130096 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
13130146 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
*
13130194 TACATATTTCACATTAGCCATTCAGC-TTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
13130241 TACACATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
13130280 TGCATGTTCA
Statistics
Matches: 213, Mismatches: 12, Indels: 16
0.88 0.05 0.07
Matches are distributed among these distances:
47 44 0.21
48 79 0.37
49 4 0.02
50 86 0.40
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:13130301 original size:47 final size:47
Alignment explanation
Indices: 13130249--13130536 Score: 459
Period size: 47 Copynumber: 6.1 Consensus size: 47
13130239 CATACACATT
* * * *
13130249 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
13130296 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
13130343 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
13130390 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
13130437 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
13130484 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
13130531 TCACAT
1 TCACAT
13130537 AAAATCCTAA
Statistics
Matches: 227, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 227 1.00
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:13130393 original size:25 final size:25
Alignment explanation
Indices: 13130364--13130441 Score: 69
Period size: 25 Copynumber: 3.2 Consensus size: 25
13130354 ATTCGGCCTT
13130364 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
* *
13130389 AT--CACAT-TGGCCA--TTCGGCCTT-
1 ATCACACATAT-G-CATGTTC-ACATTC
13130411 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
13130436 ATCACA
1 ATCACA
13130442 TTGGCCATTC
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 6 0.15
23 11 0.28
24 11 0.28
25 12 0.30
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.31
Consensus pattern (25 bp):
ATCACACATATGCATGTTCACATTC
Found at i:13139121 original size:45 final size:45
Alignment explanation
Indices: 13139018--13139237 Score: 293
Period size: 45 Copynumber: 5.0 Consensus size: 45
13139008 CCGAATTCAT
* * * * * *
13139018 TCACCGGCATT-TCGCCTGTTAGGCTCGAA-GCCTG-ATATTATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATA
* * *
13139060 TCACCTGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATA
13139105 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATA
**
13139150 TCACCGGCATTATAGCCCACTAGGCTCAAAGGCCCGAATAGTATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATA
* * *
13139195 TCACCGACACTATAGCCTACTAGGCTCAAAGGCCCGAATAGTA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
13139238 CTGTACGATA
Statistics
Matches: 161, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
42 10 0.06
43 16 0.10
44 4 0.02
45 131 0.81
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATA
Found at i:13141596 original size:41 final size:40
Alignment explanation
Indices: 13141470--13141658 Score: 211
Period size: 41 Copynumber: 4.7 Consensus size: 40
13141460 ATAGCTACTT
* * * **
13141470 GCAC-AATGCCTTCGGGACATAGCCCGGATATAGTCGCTC
1 GCACAAATGCCTTCGGGACTTAGCCCGGATGTAATAACTC
* * * *
13141509 ACACAAATGCTTTTGGGACTTAGCCCAGATGTAATAACTC
1 GCACAAATGCCTTCGGGACTTAGCCCGGATGTAATAACTC
*
13141549 GGACAAATGCCTTCGGGACTTAGCCCGGAATGTAATAACTC
1 GCACAAATGCCTTCGGGACTTAGCCCGG-ATGTAATAACTC
** * *
13141590 GCACAAATGCCTTCGGGACTTAGCCCGGAACTAGTCACTAGC
1 GCACAAATGCCTTCGGGACTTAGCCCGGATGTAATAACT--C
13141632 GCA-AAATGCCTTCGGGACTTAGCCCGG
1 GCACAAATGCCTTCGGGACTTAGCCCGG
13141659 TTATCATCCA
Statistics
Matches: 127, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.02
40 57 0.45
41 63 0.50
42 4 0.03
ACGTcount: A:0.27, C:0.28, G:0.24, T:0.22
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGACTTAGCCCGGATGTAATAACTC
Found at i:13143451 original size:25 final size:25
Alignment explanation
Indices: 13143418--13143611 Score: 277
Period size: 25 Copynumber: 7.8 Consensus size: 25
13143408 GGTTGTCACA
*
13143418 GAAA-TATTAAGAGCAAATTTAACC
1 GAAATTATTAAGAACAAATTTAACC
13143442 GAAATTATTAAGAACAAATTTAACC
1 GAAATTATTAAGAACAAATTTAACC
13143467 GAAATTATTAAGAACAAATTTAACC
1 GAAATTATTAAGAACAAATTTAACC
*
13143492 GGAATTATTAAGAACAAATTTAACC
1 GAAATTATTAAGAACAAATTTAACC
* *
13143517 GGAATTATTAAGAGCAAATTTAACC
1 GAAATTATTAAGAACAAATTTAACC
*
13143542 -AGAATTATTAAGAACAAATTTAATC
1 GA-AATTATTAAGAACAAATTTAACC
* *
13143567 GAAATTTTTAAGAGA-AAACTTAACC
1 GAAATTATTAAGA-ACAAATTTAACC
*
13143592 GGAATTATTAAGAACAAATT
1 GAAATTATTAAGAACAAATT
13143612 AACAAGCTTA
Statistics
Matches: 153, Mismatches: 12, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
24 5 0.03
25 146 0.95
26 2 0.01
ACGTcount: A:0.49, C:0.11, G:0.11, T:0.28
Consensus pattern (25 bp):
GAAATTATTAAGAACAAATTTAACC
Found at i:13148035 original size:52 final size:52
Alignment explanation
Indices: 13147952--13148050 Score: 162
Period size: 52 Copynumber: 1.9 Consensus size: 52
13147942 AACCTTCTAC
*
13147952 ACTAGAGTTGAAACCCTTGCCGCTGCATTTAAAATATTCTTACTTGGTTCCT
1 ACTAGAGTTGAAACCCTTGCCGCTGCATTTAAAATATGCTTACTTGGTTCCT
* * *
13148004 ACTAGAGTTGAAATCCTTGCTGCTGCGTTTAAAATATGCTTACTTGG
1 ACTAGAGTTGAAACCCTTGCCGCTGCATTTAAAATATGCTTACTTGG
13148051 AAGACAATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 43 1.00
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.36
Consensus pattern (52 bp):
ACTAGAGTTGAAACCCTTGCCGCTGCATTTAAAATATGCTTACTTGGTTCCT
Found at i:13155099 original size:40 final size:40
Alignment explanation
Indices: 13154916--13155085 Score: 234
Period size: 40 Copynumber: 4.3 Consensus size: 40
13154906 TCCTCGTTCA
* * * *
13154916 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
13154955 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
13154995 AATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
13155035 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
13155075 AAGGCCTTCGG
1 AATGCCTTCGG
13155086 ATCTTAGTCC
Statistics
Matches: 118, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 35 0.30
40 83 0.70
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:13163004 original size:40 final size:40
Alignment explanation
Indices: 13162821--13162990 Score: 234
Period size: 40 Copynumber: 4.3 Consensus size: 40
13162811 TCCTCGTTCA
* * * *
13162821 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
13162860 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
13162900 AATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
13162940 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
13162980 AAGGCCTTCGG
1 AATGCCTTCGG
13162991 ATCTTAGTCC
Statistics
Matches: 118, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 35 0.30
40 83 0.70
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:13175291 original size:47 final size:47
Alignment explanation
Indices: 13175200--13175377 Score: 266
Period size: 47 Copynumber: 3.7 Consensus size: 47
13175190 TTAGGATTCT
13175200 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
13175249 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
13175296 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
13175343 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
13175378 TCCCGAAGGG
Statistics
Matches: 119, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
47 99 0.83
49 20 0.17
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:13175546 original size:37 final size:37
Alignment explanation
Indices: 13175496--13175611 Score: 196
Period size: 37 Copynumber: 3.1 Consensus size: 37
13175486 CCGAGCTCTA
13175496 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
13175533 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
* * * *
13175570 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
13175607 AAGAC
1 AAGAC
13175612 TTCGTAATAA
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 75 1.00
ACGTcount: A:0.22, C:0.19, G:0.33, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
Found at i:13182196 original size:39 final size:39
Alignment explanation
Indices: 13182164--13182272 Score: 166
Period size: 39 Copynumber: 2.8 Consensus size: 39
13182154 TAAAAACATG
* * * *
13182164 TATTAAAGATGTCCAAACTATGACATAATT-AAAACTCT
1 TATTAATGATGTTCAAATTATGACATAATTAAAAACTCA
*
13182202 TATTAATGATGTTCAGATTATGACATAATTAAAAACTCA
1 TATTAATGATGTTCAAATTATGACATAATTAAAAACTCA
13182241 TATTAATGATGTTCAAATTATGACATAATTAA
1 TATTAATGATGTTCAAATTATGACATAATTAA
13182273 GGACTCAAAC
Statistics
Matches: 64, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
38 26 0.41
39 38 0.59
ACGTcount: A:0.44, C:0.11, G:0.09, T:0.36
Consensus pattern (39 bp):
TATTAATGATGTTCAAATTATGACATAATTAAAAACTCA
Found at i:13189552 original size:13 final size:13
Alignment explanation
Indices: 13189534--13189559 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
13189524 GTCAAACTGT
13189534 TGTTAAGAATGCC
1 TGTTAAGAATGCC
13189547 TGTTAAGAATGCC
1 TGTTAAGAATGCC
13189560 ACTACAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (13 bp):
TGTTAAGAATGCC
Found at i:13198554 original size:25 final size:25
Alignment explanation
Indices: 13198520--13198569 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
13198510 ATACATCGAA
13198520 TTCATTACTCATGAATTTTGCGTAC
1 TTCATTACTCATGAATTTTGCGTAC
13198545 TTCATTACTCATGAATTTTGCGTAC
1 TTCATTACTCATGAATTTTGCGTAC
13198570 ATACTTGTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.20, G:0.12, T:0.44
Consensus pattern (25 bp):
TTCATTACTCATGAATTTTGCGTAC
Found at i:13200210 original size:41 final size:43
Alignment explanation
Indices: 13200129--13200253 Score: 121
Period size: 41 Copynumber: 3.0 Consensus size: 43
13200119 TGGCATCGAT
* *
13200129 ATATGTGGTTACATGTAAGACCATGTTTGAGACTTCGGCAT-C
1 ATATGTGATTACATGTAAGACCATGTTTGAGACGTCGGCATGC
* * * * *
13200171 ATATTTGATT-CGTGTAAGACCCTGTTTGGGACAGT-GGCATGG
1 ATATGTGATTACATGTAAGACCATGTTTGAGAC-GTCGGCATGC
* * * *
13200213 ATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
1 ATATGTGATTACATGTAAGACCATGTTTGAGACGTCGGCAT
13200254 TTTACGATAT
Statistics
Matches: 67, Mismatches: 12, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
41 24 0.36
42 20 0.30
43 23 0.34
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (43 bp):
ATATGTGATTACATGTAAGACCATGTTTGAGACGTCGGCATGC
Found at i:13209986 original size:44 final size:43
Alignment explanation
Indices: 13209891--13209986 Score: 120
Period size: 44 Copynumber: 2.2 Consensus size: 43
13209881 GGAATGCTGA
*
13209891 CATTGATTTGAGATATCATGTAAGACCGTGTCTGGGACACAGG
1 CATTGATTTGAGATATCATGTAAGACCATGTCTGGGACACAGG
* * * * * *
13209934 CCTCGATTTGAGATTTACGTGTAAGACTATGTCTGGGACATAGG
1 CATTGATTTGAGATAT-CATGTAAGACCATGTCTGGGACACAGG
13209978 CATTGATTT
1 CATTGATTT
13209987 TGTGTACTAG
Statistics
Matches: 43, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
43 13 0.30
44 30 0.70
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (43 bp):
CATTGATTTGAGATATCATGTAAGACCATGTCTGGGACACAGG
Found at i:13215668 original size:22 final size:22
Alignment explanation
Indices: 13215643--13215692 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 22
13215633 CTAAGTCAAT
13215643 AGGACGGCTCAATGCTGTAGAC
1 AGGACGGCTCAATGCTGTAGAC
* *
13215665 AGGATGGCTCAATGTTGTAGAC
1 AGGACGGCTCAATGCTGTAGAC
13215687 AGGACG
1 AGGACG
13215693 ACTAAAGGCC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.28, C:0.18, G:0.34, T:0.20
Consensus pattern (22 bp):
AGGACGGCTCAATGCTGTAGAC
Found at i:13220833 original size:63 final size:64
Alignment explanation
Indices: 13220753--13220935 Score: 178
Period size: 63 Copynumber: 2.8 Consensus size: 64
13220743 AGACATTATG
* * *
13220753 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCT-C-AGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGA-GATAA
* * * * * *
13220816 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTTAAGGACGCCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTAAG-T--GTACACCATGTAGACAAGAGAGCTACGAGAT
13220881 AA
63 AA
* *
13220883 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAG-ACAAGAGAGC
13220936 CGAACTATAT
Statistics
Matches: 97, Mismatches: 16, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
62 1 0.01
63 43 0.44
64 1 0.01
65 1 0.01
66 42 0.43
67 6 0.06
68 3 0.03
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:13227996 original size:22 final size:22
Alignment explanation
Indices: 13227969--13228015 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
13227959 GGAAGCACAT
*
13227969 GAGTCGTTCTCAAGCACTAGTA
1 GAGTCGTTCTCAAGCACCAGTA
13227991 GAGTCGTTCTCAAGCACCAGTA
1 GAGTCGTTCTCAAGCACCAGTA
13228013 GAG
1 GAG
13228016 GACCTGTTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (22 bp):
GAGTCGTTCTCAAGCACCAGTA
Found at i:13228450 original size:112 final size:112
Alignment explanation
Indices: 13228253--13228477 Score: 441
Period size: 112 Copynumber: 2.0 Consensus size: 112
13228243 GGTATGGTGG
*
13228253 AGGTGAGTCATCCCAAGTTCGGCACTTTTAAGGTAAACAAAACCCGATTAAAACCTTATTTTGAT
1 AGGTGAGTCATCCCAAGTTCGGCACTTTTAAGGTAAACAAAACCCGATTAAAACCTTATTTTGAC
13228318 GAGATTGATAGTAGGAATGAGTATAAACTCCTCAAACCACCATGACC
66 GAGATTGATAGTAGGAATGAGTATAAACTCCTCAAACCACCATGACC
13228365 AGGTGAGTCATCCCAAGTTCGGCACTTTTAAGGTAAACAAAACCCGATTAAAACCTTATTTTGAC
1 AGGTGAGTCATCCCAAGTTCGGCACTTTTAAGGTAAACAAAACCCGATTAAAACCTTATTTTGAC
13228430 GAGATTGATAGTAGGAATGAGTATAAACTCCTCAAACCACCATGACC
66 GAGATTGATAGTAGGAATGAGTATAAACTCCTCAAACCACCATGACC
13228477 A
1 A
13228478 TTCACTAAAG
Statistics
Matches: 112, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
112 112 1.00
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (112 bp):
AGGTGAGTCATCCCAAGTTCGGCACTTTTAAGGTAAACAAAACCCGATTAAAACCTTATTTTGAC
GAGATTGATAGTAGGAATGAGTATAAACTCCTCAAACCACCATGACC
Found at i:13228819 original size:42 final size:42
Alignment explanation
Indices: 13228760--13228848 Score: 178
Period size: 42 Copynumber: 2.1 Consensus size: 42
13228750 CGAGCGTGAG
13228760 ACACGCTCGTGTGGAAGAACTGTGGGTGAGCTTGTGAAAACA
1 ACACGCTCGTGTGGAAGAACTGTGGGTGAGCTTGTGAAAACA
13228802 ACACGCTCGTGTGGAAGAACTGTGGGTGAGCTTGTGAAAACA
1 ACACGCTCGTGTGGAAGAACTGTGGGTGAGCTTGTGAAAACA
13228844 ACACG
1 ACACG
13228849 GGTGTGCGAC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.29, C:0.18, G:0.33, T:0.20
Consensus pattern (42 bp):
ACACGCTCGTGTGGAAGAACTGTGGGTGAGCTTGTGAAAACA
Found at i:13228923 original size:21 final size:21
Alignment explanation
Indices: 13228911--13228950 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
13228901 ACGGGTATGG
*
13228911 GGCTTGCACACACGAGCGTGA
1 GGCTTGCACACACGAGCATGA
13228932 GGCTTGCACACACGAGCAT
1 GGCTTGCACACACGAGCAT
13228951 AGGAGAAGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.25, C:0.30, G:0.30, T:0.15
Consensus pattern (21 bp):
GGCTTGCACACACGAGCATGA
Found at i:13234011 original size:19 final size:19
Alignment explanation
Indices: 13233976--13234013 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
13233966 ATCAGGGGCC
*
13233976 CACGAGCCCATTGGGCCCA
1 CACGAGCCCATTAGGCCCA
13233995 CACG-GCCCATCTAGGCCCA
1 CACGAGCCCAT-TAGGCCCA
13234014 ACGTGGCCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.21, C:0.45, G:0.24, T:0.11
Consensus pattern (19 bp):
CACGAGCCCATTAGGCCCA
Found at i:13239401 original size:79 final size:81
Alignment explanation
Indices: 13239268--13239449 Score: 221
Period size: 79 Copynumber: 2.3 Consensus size: 81
13239258 AATGATGTCT
*
13239268 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGT
*
13239332 GCGAGATACTA-ATTCC
66 GCGAGATACTATA-ACC
* * * **
13239348 GGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATTTG
* *
13239410 TGTGAGTTACTATAACC
65 TGCGAGATACTATAACC
*
13239427 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
13239450 AACGAGTAGC
Statistics
Matches: 88, Mismatches: 10, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
78 1 0.01
79 57 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (81 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGT
GCGAGATACTATAACC
Found at i:13239463 original size:40 final size:40
Alignment explanation
Indices: 13239268--13239449 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 40
13239258 AATGATGTCT
* * * *
13239268 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACC
* * *
13239308 GGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-ACC
13239348 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CC
* *
13239387 GGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
*
13239427 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
13239450 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
39 35 0.28
40 78 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
Found at i:13239471 original size:79 final size:79
Alignment explanation
Indices: 13239318--13239482 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
13239308 GGACTAAGAT
* **
13239318 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
13239383 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
13239397 CCGAAGGCATTTGTGTGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
13239460 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
13239476 CCGAAGG
1 CCGAAGG
13239483 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:13249526 original size:39 final size:40
Alignment explanation
Indices: 13249412--13249596 Score: 173
Period size: 40 Copynumber: 4.7 Consensus size: 40
13249402 GCTACTCGTT
* * * *
13249412 CAAATGCCTTCGGGACATAGCCTGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGAAT-TAGTAACTCGCA
*
13249452 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
* * *
13249492 CCAATGCCTTCGGG-TTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
** * * *
13249531 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGAAT-TAGTAAC-TCGCA
*
13249572 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
13249597 CATCATTCGA
Statistics
Matches: 124, Mismatches: 14, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
38 2 0.02
39 34 0.27
40 75 0.60
41 13 0.10
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
Found at i:13249580 original size:79 final size:80
Alignment explanation
Indices: 13249412--13249596 Score: 207
Period size: 79 Copynumber: 2.3 Consensus size: 80
13249402 GCTACTCGTT
* * *
13249412 CAAATGCCTTCGGGACATAGCCTGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
13249476 GATTTAGTAACTCGCAC
64 GATATAGTAACTAGCAC
* * **
13249493 CAATGCCTTCGGG-TTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
13249556 ATATGGTCACTTAGCA-
65 ATATAGTAAC-TAGCAC
13249572 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
13249597 CATCATTCGA
Statistics
Matches: 87, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
78 3 0.03
79 57 0.66
80 24 0.28
81 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTAGCAC
Found at i:13257221 original size:79 final size:80
Alignment explanation
Indices: 13257053--13257237 Score: 216
Period size: 79 Copynumber: 2.3 Consensus size: 80
13257043 GCTACTCGTT
* *
13257053 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
13257117 GATTTAGTAACTCGCAC
64 GATATAGTAACTAGCAC
* * **
13257134 CAATGCCTTCGGG-TTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
13257197 ATATGGTCACTTAGCA-
65 ATATAGTAAC-TAGCAC
13257213 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
13257238 CATCATTCGA
Statistics
Matches: 88, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 58 0.66
80 24 0.27
81 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTAGCAC
Found at i:13257237 original size:40 final size:40
Alignment explanation
Indices: 13257034--13257237 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
13257024 CGGAATTTAA
** *
13257034 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
13257074 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
13257114 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-TTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
13257153 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
13257193 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
13257233 CCGGA
1 CCGGA
13257238 CATCATTCGA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 93 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:13259677 original size:10 final size:10
Alignment explanation
Indices: 13259662--13259687 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
13259652 AAACACCAAG
13259662 AGTTTGAATA
1 AGTTTGAATA
13259672 AGTTTGAATA
1 AGTTTGAATA
13259682 AGTTTG
1 AGTTTG
13259688 TTGCTAGCCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.35, C:0.00, G:0.23, T:0.42
Consensus pattern (10 bp):
AGTTTGAATA
Found at i:13260864 original size:24 final size:24
Alignment explanation
Indices: 13260837--13260882 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
13260827 GTGAAACTAC
*
13260837 AAAGGCTAGAAAGCCGAAAAGTCG
1 AAAGGCTAAAAAGCCGAAAAGTCG
*
13260861 AAAGGCTAAAAAGCTGAAAAGT
1 AAAGGCTAAAAAGCCGAAAAGT
13260883 GGGTTGTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.50, C:0.13, G:0.26, T:0.11
Consensus pattern (24 bp):
AAAGGCTAAAAAGCCGAAAAGTCG
Found at i:13261404 original size:23 final size:23
Alignment explanation
Indices: 13261357--13261406 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
13261347 CTGTATTTGA
13261357 GCATGCCATGTTATATGTATATT
1 GCATGCCATGTTATATGTATATT
*
13261380 GCAT-CCATGTATGATAT-TATGTT
1 GCATGCCATGT-T-ATATGTATATT
13261403 GCAT
1 GCAT
13261407 TGCATGGGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
22 6 0.25
23 14 0.58
24 4 0.17
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.42
Consensus pattern (23 bp):
GCATGCCATGTTATATGTATATT
Found at i:13273167 original size:40 final size:40
Alignment explanation
Indices: 13273130--13273302 Score: 260
Period size: 40 Copynumber: 4.3 Consensus size: 40
13273120 GCTACTCGTT
* *
13273130 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
13273170 CAAATGCCTTCGAGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
13273210 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** *
13273250 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
13273290 CAAATGCCTTCGG
1 CAAATGCCTTCGG
13273303 ATCTTAGTCT
Statistics
Matches: 123, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
39 3 0.02
40 117 0.95
41 3 0.02
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:13273234 original size:80 final size:80
Alignment explanation
Indices: 13273097--13273302 Score: 269
Period size: 80 Copynumber: 2.6 Consensus size: 80
13273087 AAATCACGTA
* ** *
13273097 CCTTCGGAAT-TTAA-CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTA
1 CCTTCGG-ATCTTAACCCGGATTTAG-TAACTCGCACAAATGCCTTCGGGACATAACCCGGATT-
13273158 TAGTAACTCGCACAAATG
63 TAGTAACTCGCACAAATG
*
13273176 CCTTCGAGA-CTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTA
1 CCTTCG-GATCTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACATAACCCGGATTTA
13273240 GTAACTCGCACAAATG
65 GTAACTCGCACAAATG
** *
13273256 CCTTCGGATCTTAGTCCGGATTTAGTAACTCGTACAAATGCCTTCGG
1 CCTTCGGATCTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGG
13273303 ATCTTAGTCT
Statistics
Matches: 113, Mismatches: 8, Indels: 11
0.86 0.06 0.08
Matches are distributed among these distances:
79 14 0.12
80 97 0.86
81 2 0.02
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (80 bp):
CCTTCGGATCTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACATAACCCGGATTTAG
TAACTCGCACAAATG
Found at i:13273303 original size:40 final size:39
Alignment explanation
Indices: 13273130--13273355 Score: 258
Period size: 40 Copynumber: 5.6 Consensus size: 39
13273120 GCTACTCGTT
*
13273130 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATT-TAGTAACTCGCA
*
13273170 CAAATGCCTTCGAGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCG-GACTTAGCCCGGATTTAGTAACTCGCA
*
13273210 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATTTAGTAACTCGCA
* *
13273250 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
13273290 CAAATGCCTTCGGATCTTAGTCTGGATATGGTCACCTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGT-AACTCGCA
*
13273331 CAAA-GCCTTTGGGACTTAGCCCGGA
1 CAAATGCC-TTCGGACTTAGCCCGGA
13273356 CATCATTCAA
Statistics
Matches: 166, Mismatches: 14, Indels: 12
0.86 0.07 0.06
Matches are distributed among these distances:
39 4 0.02
40 145 0.87
41 17 0.10
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:13275824 original size:37 final size:37
Alignment explanation
Indices: 13275774--13275852 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
13275764 TTATTACGAA
* *
13275774 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
13275811 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
13275848 GTCTT
1 GTCTT
13275853 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:13276049 original size:47 final size:47
Alignment explanation
Indices: 13275971--13276463 Score: 833
Period size: 47 Copynumber: 10.4 Consensus size: 47
13275961 CCCTTCGAAA
* * * * * * *
13275971 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
13276018 CCTGTCACATATATACTCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
13276065 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
13276112 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
13276159 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
13276206 CTTATCACACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTAT--CACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
13276255 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
13276302 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
13276349 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
13276396 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
13276445 CTTATCACATATATACACT
1 CTTATCACATATATACACT
13276464 GTCTTGGCTG
Statistics
Matches: 424, Mismatches: 18, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
47 331 0.78
49 93 0.22
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:13276297 original size:190 final size:190
Alignment explanation
Indices: 13275971--13276463 Score: 846
Period size: 190 Copynumber: 2.6 Consensus size: 190
13275961 CCCTTCGAAA
* * * * * * * * *
13275971 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGT--CACATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATATAC
*
13276034 TCTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
13276099 TTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
13276159 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATATAC
13276224 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
13276289 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
13276349 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATATAC
*
13276414 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACT
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
13276464 GTCTTGGCTG
Statistics
Matches: 289, Mismatches: 14, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
188 43 0.15
190 246 0.85
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (190 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:13305231 original size:37 final size:37
Alignment explanation
Indices: 13305181--13305259 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
13305171 TTATTACGAA
* * *
13305181 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
13305218 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
13305255 GTCTT
1 GTCTT
13305260 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:13305457 original size:47 final size:47
Alignment explanation
Indices: 13305378--13306096 Score: 1132
Period size: 47 Copynumber: 15.1 Consensus size: 47
13305368 CCCTTCAGGA
* * * * * *
13305378 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
13305425 CCTGTCACATATATATACTTTCACATTAATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
13305472 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
13305521 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
13305570 CCTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
13305617 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
13305664 CTTATCACATATATAGACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
13305711 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
13305758 CCTATCACATATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATA--TATACACTTTCACATTCATCACATCGGCCATTAGGC
*
13305807 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
13305854 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** *
13305903 CTTATCATGTATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
13305950 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
13305999 CTTATCATATATATACACTTTCACGTTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
13306046 CTTATCATATATATACACTTTCACGTTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
13306093 CTTA
1 CTTA
13306097 CTATCATTTC
Statistics
Matches: 634, Mismatches: 30, Indels: 16
0.93 0.04 0.02
Matches are distributed among these distances:
47 406 0.64
49 228 0.36
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:13305583 original size:96 final size:96
Alignment explanation
Indices: 13305378--13306096 Score: 1093
Period size: 96 Copynumber: 7.5 Consensus size: 96
13305368 CCCTTCAGGA
* * * * * * * *
13305378 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAT--
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
13305441 ACTTTCACATTAATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
13305472 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
13305537 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
* *
13305570 CCTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
13305633 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
13305664 CTTATCACATATATAGACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
13305727 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
13305758 CCTATCACATATGTATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--GTATAT
1 CTTATCACATA--TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
13305821 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
13305854 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT--CATGTATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
13305917 ACACTTTCACATTCATCACATCAGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
13305950 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT--CATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
13306013 ACACTTTCACGTTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
* *
13306046 CTTATCATATATATACACTTTCACGTTCATCACATCGGCCATTAGGCCTTA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
13306097 CTATCATTTC
Statistics
Matches: 591, Mismatches: 24, Indels: 20
0.93 0.04 0.03
Matches are distributed among these distances:
94 190 0.32
96 360 0.61
98 41 0.07
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:13305670 original size:143 final size:143
Alignment explanation
Indices: 13305378--13306096 Score: 1135
Period size: 143 Copynumber: 5.0 Consensus size: 143
13305368 CCCTTCAGGA
* * * * * * * *
13305378 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
13305441 ACTTTCACATTAATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
13305506 CATCGGCCATTAGGC
129 CATCGGCCATTAGGC
* * *
13305521 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACGTATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
13305586 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
13305651 TCGGCCATTAGGC
131 TCGGCCATTAGGC
*
13305664 CTTATCAC--ATATATAGACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
13305727 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATGTATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA--TATACACTTTCACATTCATCA
13305792 CATCGGCCATTAGGC
129 CATCGGCCATTAGGC
*
13305807 CTTATCAC--GTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
**
13305870 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCATGTATATACACTTTCACATTCATCA
64 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
*
13305935 CATCAGCCATTAGGC
129 CATCGGCCATTAGGC
*
13305950 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCATATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* * *
13306015 ACTTTCACGTTCATCACATCGGCCATTAGGCCTTATCATATATATACACTTTCACGTTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
13306080 TCGGCCATTAGGC
131 TCGGCCATTAGGC
13306093 CTTA
1 CTTA
13306097 CTATCATTTC
Statistics
Matches: 540, Mismatches: 28, Indels: 16
0.92 0.05 0.03
Matches are distributed among these distances:
141 93 0.17
143 273 0.51
144 1 0.00
145 173 0.32
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.32
Consensus pattern (143 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:13309073 original size:41 final size:40
Alignment explanation
Indices: 13308945--13309137 Score: 255
Period size: 40 Copynumber: 4.8 Consensus size: 40
13308935 GGATATAGCT
* * * *
13308945 ACTCGCTC-AATGCCTTCGGGACATAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATGTAATA
*
13308984 ACTCACACAAATGCCTTCGGGACTTAGCCCGGATGTAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATGTAATA
13309024 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATGTAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-ATGTAATA
* ** * *
13309065 ACTCGCACAAATGCCTTCGGGACTTAGCTCGGAACTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATGTAATA
13309105 ACTAGCGCA-AAATGCCTTCGGGACTTAGCCCGG
1 ACT--CGCACAAATGCCTTCGGGACTTAGCCCGG
13309138 TTATCATCCA
Statistics
Matches: 138, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
39 6 0.04
40 66 0.48
41 62 0.45
42 4 0.03
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATGTAATA
Found at i:13309086 original size:81 final size:80
Alignment explanation
Indices: 13308945--13309137 Score: 255
Period size: 81 Copynumber: 2.4 Consensus size: 80
13308935 GGATATAGCT
* * *
13308945 ACTCGCTC-AATGCCTTCGGGACATAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCACACAAATGCCTTCGGGACTT
**
13309009 AGCCCGGATGTAATA
66 AGCCCGGAACTAATA
* *
13309024 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATGTAATAACTCGCACAAATGCCTTCGGGACT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-ATATAATAACTCACACAAATGCCTTCGGGACT
* * *
13309089 TAGCTCGGAACTAGTC
65 TAGCCCGGAACTAATA
13309105 ACTAGCGCA-AAATGCCTTCGGGACTTAGCCCGG
1 ACT--CGCACAAATGCCTTCGGGACTTAGCCCGG
13309138 TTATCATCCA
Statistics
Matches: 100, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
79 7 0.07
80 22 0.22
81 43 0.43
82 24 0.24
83 4 0.04
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (80 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCACACAAATGCCTTCGGGACTT
AGCCCGGAACTAATA
Found at i:13315044 original size:26 final size:26
Alignment explanation
Indices: 13315015--13315122 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
13315005 TGGTACAAAT
13315015 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
13315041 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
13315067 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
13315093 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
13315119 TGAT
1 TGAT
13315123 GGGCATTTTA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:13316645 original size:26 final size:26
Alignment explanation
Indices: 13316615--13316664 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
13316605 ATAGTTTTAC
13316615 CCCTAGGAGATAAATT-ACCAAAATAT
1 CCCTAGG-GATAAATTGACCAAAATAT
* *
13316641 CCCTAGGGTTAAATTGACCTAAAT
1 CCCTAGGGATAAATTGACCAAAAT
13316665 GCATGTTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.40, C:0.20, G:0.14, T:0.26
Consensus pattern (26 bp):
CCCTAGGGATAAATTGACCAAAATAT
Found at i:13317099 original size:15 final size:15
Alignment explanation
Indices: 13317079--13317109 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
13317069 ATGGGCTTGA
13317079 GCTGACTTGGGCTTT
1 GCTGACTTGGGCTTT
13317094 GCTGACTTGGGCTTT
1 GCTGACTTGGGCTTT
13317109 G
1 G
13317110 AATGAGTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.06, C:0.19, G:0.35, T:0.39
Consensus pattern (15 bp):
GCTGACTTGGGCTTT
Found at i:13320713 original size:45 final size:50
Alignment explanation
Indices: 13320631--13320821 Score: 134
Period size: 51 Copynumber: 3.9 Consensus size: 50
13320621 TTGAACATAG
* **
13320631 TCACA-TATCACA-CACCGAAGCCATAGCCCTA-CCATGGTCTTACA-GG-A
1 TCACATTAT-ACATCACCGATGCCATAGCCC-AGATATGGTCTTACATGGAA
* *
13320678 TCACA-TAT-CAT-ACCGATGCCATATCCCAGATATGGTCTTATATGGAA
1 TCACATTATACATCACCGATGCCATAGCCCAGATATGGTCTTACATGGAA
* * *
13320725 TCACATTATCACATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGGAAA
1 TCACATTAT-ACAT--CACCGATGCCATAGCCCAGATATGGTCTTACATGG-AA
* *
13320779 T-AC--TATCACATTGCACCGATGCCATAGCCTAGCTATGGTCTTA
1 TCACATTAT-ACA-T-CACCGATGCCATAGCCCAGATATGGTCTTA
13320822 TACGGAAGCA
Statistics
Matches: 122, Mismatches: 10, Indels: 20
0.80 0.07 0.13
Matches are distributed among these distances:
44 1 0.01
45 26 0.21
46 2 0.02
47 14 0.11
48 3 0.02
50 3 0.02
51 36 0.30
52 1 0.01
53 33 0.27
54 3 0.02
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (50 bp):
TCACATTATACATCACCGATGCCATAGCCCAGATATGGTCTTACATGGAA
Found at i:13320759 original size:53 final size:52
Alignment explanation
Indices: 13320684--13320841 Score: 212
Period size: 51 Copynumber: 3.0 Consensus size: 52
13320674 AGGATCACAT
* * * *
13320684 ATCATACCGATGCCATATCCCAGATATGGTCTTATATGGAATCACATTATCAC
1 ATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACA-TATCAC
13320737 ATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGGAAAT-AC-TATCAC
1 ATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGG-AATCACATATCAC
** * *
13320788 ATTGCACCGATGCCATAGCCTAGCTATGGTCTTATACGGAAGCACATATCAC
1 ATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATATCAC
13320840 AT
1 AT
13320842 ATTTTCCGTC
Statistics
Matches: 94, Mismatches: 8, Indels: 7
0.86 0.07 0.06
Matches are distributed among these distances:
50 2 0.02
51 44 0.47
52 8 0.09
53 37 0.39
54 3 0.03
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.27
Consensus pattern (52 bp):
ATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATATCAC
Found at i:13324330 original size:48 final size:49
Alignment explanation
Indices: 13324267--13324366 Score: 193
Period size: 48 Copynumber: 2.1 Consensus size: 49
13324257 GGTGCCGTTT
13324267 TCTTCTGCTTAAACACCTTAGGGTTGTTCTTTTCTC-TTTTTTTTCCTC
1 TCTTCTGCTTAAACACCTTAGGGTTGTTCTTTTCTCTTTTTTTTTCCTC
13324315 TCTTCTGCTTAAACACCTTAGGGTTGTTCTTTTCTCTTTTTTTTTCCTC
1 TCTTCTGCTTAAACACCTTAGGGTTGTTCTTTTCTCTTTTTTTTTCCTC
13324364 TCT
1 TCT
13324367 AGCTGAAACC
Statistics
Matches: 51, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
48 36 0.71
49 15 0.29
ACGTcount: A:0.10, C:0.25, G:0.10, T:0.55
Consensus pattern (49 bp):
TCTTCTGCTTAAACACCTTAGGGTTGTTCTTTTCTCTTTTTTTTTCCTC
Found at i:13327241 original size:81 final size:82
Alignment explanation
Indices: 13327087--13327246 Score: 207
Period size: 81 Copynumber: 2.0 Consensus size: 82
13327077 GTTATCCCTG
*
13327087 TTTGCAAAATTACAAAAATACCCTCAACTTGTAAAATTACCAAAGTACCCCCGATATATAAAATT
1 TTTGCAAAATTACAAAAATACCCTCAACTTGCAAAATTACCAAAGTACCCCCGATATATAAAATT
13327152 ACCCAAATA-TCCTCGA
66 ACCCAAATACTCCTCGA
* ** * * * *
13327168 TTTGTAAAATTACAAAAATACCCTCAGTTTGCAAAATTACTGAAA-TACCCTCGATTTGTAAAAT
1 TTTGCAAAATTACAAAAATACCCTCAACTTGCAAAATTAC-CAAAGTACCCCCGATATATAAAAT
**
13327232 TACTGAAATACTCCT
65 TACCCAAATACTCCT
13327247 GTAAGATAGA
Statistics
Matches: 67, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
81 60 0.90
82 7 0.10
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.29
Consensus pattern (82 bp):
TTTGCAAAATTACAAAAATACCCTCAACTTGCAAAATTACCAAAGTACCCCCGATATATAAAATT
ACCCAAATACTCCTCGA
Found at i:13327242 original size:27 final size:27
Alignment explanation
Indices: 13327087--13327234 Score: 154
Period size: 27 Copynumber: 5.5 Consensus size: 27
13327077 GTTATCCCTG
* *
13327087 TTTGCAAAATTACAAAAATACCCTCAA
1 TTTGTAAAATTACAAAAATACCCTCGA
* * * *
13327114 CTTGTAAAATTACCAAAGTACCCCCGA
1 TTTGTAAAATTACAAAAATACCCTCGA
* * ** *
13327141 TATATAAAATTACCCAAATATCCTCGA
1 TTTGTAAAATTACAAAAATACCCTCGA
13327168 TTTGTAAAATTACAAAAATACCCTC-A
1 TTTGTAAAATTACAAAAATACCCTCGA
* **
13327194 GTTTGCAAAATTACTGAAATACCCTCGA
1 -TTTGTAAAATTACAAAAATACCCTCGA
13327222 TTTGTAAAATTAC
1 TTTGTAAAATTAC
13327235 TGAAATACTC
Statistics
Matches: 97, Mismatches: 22, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
26 1 0.01
27 95 0.98
28 1 0.01
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.29
Consensus pattern (27 bp):
TTTGTAAAATTACAAAAATACCCTCGA
Found at i:13327298 original size:81 final size:80
Alignment explanation
Indices: 13327213--13327562 Score: 384
Period size: 81 Copynumber: 4.3 Consensus size: 80
13327203 ATTACTGAAA
* ** ** *
13327213 TACCCTCGATTTGTAAAATTACTGAAATACTCCT-G-TAAGATAGAATTACCATTTTACCCTCAA
1 TACCCTCGATTTATAAAATTACTGATTTAC-CCTCGAT-TTATAGAATTACCATTTTACCCTCGA
*
13327276 TTTACAGAATTATCGTTT
64 TTTACAGAATTA-CATTT
* *
13327294 TACCCTCGATTTATAGAATTACT-ATTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGA
1 TACCCTCGATTTATAAAATTACTGA--TTTACCCTCGATTTATAGAATTACCATTTTACCCTCGA
*
13327358 TTTATAGAATTACTATTT
64 TTTACAGAATTAC-ATTT
* * * *
13327376 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTCGATT
1 TACCCTCGATTTATAAAATTACTGATTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATT
13327441 TACAGAATTACCATTT
66 TACAGAATTA-CATTT
* * * * *
13327457 TACCCTTGATTTATAGAATTACT-ATTTTACCCTCGATTTACAGAATTACCGTCTTACCCTCGAT
1 TACCCTCGATTTATAAAATTACTGA-TTTACCCTCGATTTATAGAATTACCATTTTACCCTCGAT
*
13327521 TTATAGAATTACCATTT
65 TTACAGAATTA-CATTT
* * *
13327538 TACCCTCAATGTAAAAAATTACTGA
1 TACCCTCGATTTATAAAATTACTGA
13327563 AATACCCTTG
Statistics
Matches: 228, Mismatches: 32, Indels: 17
0.82 0.12 0.06
Matches are distributed among these distances:
80 1 0.00
81 164 0.72
82 62 0.27
83 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.08, T:0.39
Consensus pattern (80 bp):
TACCCTCGATTTATAAAATTACTGATTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATT
TACAGAATTACATTT
Found at i:13327559 original size:27 final size:27
Alignment explanation
Indices: 13327254--13327544 Score: 420
Period size: 27 Copynumber: 10.7 Consensus size: 27
13327244 CCTGTAAGAT
*
13327254 AGAATTACCATTTTACCCTCAATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* * *
13327281 AGAATTATCGTTTTACCCTCGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
*
13327308 AGAATTACTATTTTTACCCTCGATTTAC
1 AGAATTACCA-TTTTACCCTCGATTTAC
*
13327336 AGAATTACCATTTTACCCTCGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
*
13327363 AGAATTACTATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* * *
13327390 AAAATTACCGTTTTACCCTCGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
*
13327417 AGAATTACTATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* *
13327444 AGAATTACCATTTTACCCTTGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
*
13327471 AGAATTACTATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* * *
13327498 AGAATTACCGTCTTACCCTCGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
13327525 AGAATTACCATTTTACCCTC
1 AGAATTACCATTTTACCCTC
13327545 AATGTAAAAA
Statistics
Matches: 231, Mismatches: 32, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
27 206 0.89
28 25 0.11
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.41
Consensus pattern (27 bp):
AGAATTACCATTTTACCCTCGATTTAC
Found at i:13327559 original size:54 final size:54
Alignment explanation
Indices: 13327252--13327544 Score: 496
Period size: 54 Copynumber: 5.4 Consensus size: 54
13327242 CTCCTGTAAG
* * *
13327252 ATAGAATTACCATTTTACCCTCAATTTACAGAATTATCGTTTTACCCTCGATTT
1 ATAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTT
*
13327306 ATAGAATTACTATTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTT
1 ATAGAATTACTA-TTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTT
*
13327361 ATAGAATTACTATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTT
1 ATAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTT
* *
13327415 ATAGAATTACTATTTTACCCTCGATTTACAGAATTACCATTTTACCCTTGATTT
1 ATAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTT
*
13327469 ATAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTCTTACCCTCGATTT
1 ATAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTT
*
13327523 ATAGAATTACCATTTTACCCTC
1 ATAGAATTACTATTTTACCCTC
13327545 AATGTAAAAA
Statistics
Matches: 225, Mismatches: 13, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
54 174 0.77
55 51 0.23
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.41
Consensus pattern (54 bp):
ATAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTT
Found at i:13327585 original size:81 final size:81
Alignment explanation
Indices: 13327254--13327615 Score: 404
Period size: 81 Copynumber: 4.5 Consensus size: 81
13327244 CCTGTAAGAT
* * * * * *
13327254 AGAATTACCATTTTACCCTCAATTTACAGAATTATCGTTTTACCCTCGATTTATAGAATTACT-A
1 AGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTAAAAAATTACTGA
13327318 TTTTTACCCTCGATTTAC
66 --TTTACCCTCGATTTAC
* * * *
13327336 AGAATTACCATTTTACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAAAATTACCGT
1 AGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTAAAAAATTACTGA
*
13327401 TTTACCCTCGATTTAT
66 TTTACCCTCGATTTAC
* * * * *
13327417 AGAATTACTATTTTACCCTCGATTTACAGAATTACCATTTTACCCTTGATTTATAGAATTACT-A
1 AGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTAAAAAATTACTGA
13327481 TTTTACCCTCGATTTAC
66 -TTTACCCTCGATTTAC
* * * *
13327498 AGAATTACCGTCTTACCCTCGATTTATAGAATTACCATTTTACCCTCAATGTAAAAAATTACTGA
1 AGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTAAAAAATTACTGA
** * *
13327563 AATACCCTTGGTTTAC
66 TTTACCCTCGATTTAC
* *** ** *
13327579 AAAATTACCAAAATACCCTCGATCAATAAAATTACCA
1 AGAATTACCATTTTACCCTCGATTTATAGAATTACCA
13327616 AAATACCATT
Statistics
Matches: 237, Mismatches: 40, Indels: 7
0.83 0.14 0.02
Matches are distributed among these distances:
81 181 0.76
82 56 0.24
ACGTcount: A:0.33, C:0.22, G:0.07, T:0.38
Consensus pattern (81 bp):
AGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTAAAAAATTACTGA
TTTACCCTCGATTTAC
Found at i:13327596 original size:54 final size:54
Alignment explanation
Indices: 13327538--13327649 Score: 136
Period size: 54 Copynumber: 2.1 Consensus size: 54
13327528 ATTACCATTT
* ** * *
13327538 TACCCTCAATGTAA-AAAATTACTGAAATACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCAAT-CAATAAAATTACCAAAATACCATTAGTTTACAAAATTACCAAAA
* **
13327592 TACCCTCGATCAATAAAATTACCAAAATACCATTAGTTTGTAAAATTACCAAAA
1 TACCCTCAATCAATAAAATTACCAAAATACCATTAGTTTACAAAATTACCAAAA
13327646 TACC
1 TACC
13327650 TCTACTTTGT
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
53 2 0.04
54 47 0.96
ACGTcount: A:0.45, C:0.21, G:0.06, T:0.28
Consensus pattern (54 bp):
TACCCTCAATCAATAAAATTACCAAAATACCATTAGTTTACAAAATTACCAAAA
Found at i:13327635 original size:27 final size:27
Alignment explanation
Indices: 13327579--13327676 Score: 92
Period size: 27 Copynumber: 3.6 Consensus size: 27
13327569 CTTGGTTTAC
* ***
13327579 AAAATTACCAAAATACCCTCGA-TCAAT
1 AAAATTACCAAAATA-CCTCTACTTTGT
*
13327606 AAAATTACCAAAATACCAT-TAGTTTGT
1 AAAATTACCAAAATACC-TCTACTTTGT
13327633 AAAATTACCAAAATACCTCTACTTTGT
1 AAAATTACCAAAATACCTCTACTTTGT
** *
13327660 GTAATTACCGAAATACC
1 AAAATTACCAAAATACC
13327677 CTTGTAGGGT
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
26 4 0.07
27 56 0.93
ACGTcount: A:0.44, C:0.21, G:0.06, T:0.29
Consensus pattern (27 bp):
AAAATTACCAAAATACCTCTACTTTGT
Found at i:13327692 original size:27 final size:27
Alignment explanation
Indices: 13327662--13327965 Score: 455
Period size: 27 Copynumber: 11.3 Consensus size: 27
13327652 TACTTTGTGT
*
13327662 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
13327689 AATTACGGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
13327716 AATTACCGAAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
13327743 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
13327770 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
13327797 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
13327824 AATAACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
13327851 AATGATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
13327878 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
13327905 AAATACCGAGATACCCTTGTGGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
13327932 AATTACCGAGATACCCTTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
13327959 AATTACC
1 AATTACC
13327966 ATTTTGCCCC
Statistics
Matches: 254, Mismatches: 23, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 254 1.00
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:13328405 original size:31 final size:31
Alignment explanation
Indices: 13328367--13328437 Score: 124
Period size: 31 Copynumber: 2.3 Consensus size: 31
13328357 TTGCATTCAC
13328367 ATTCTGATTTTGATTCTGTTACCTGATACCG
1 ATTCTGATTTTGATTCTGTTACCTGATACCG
*
13328398 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACCG
*
13328429 ATTTTGATT
1 ATTCTGATT
13328438 CTGTCACCTA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.20, C:0.15, G:0.15, T:0.49
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACCG
Found at i:13328406 original size:25 final size:25
Alignment explanation
Indices: 13328393--13328465 Score: 85
Period size: 25 Copynumber: 3.0 Consensus size: 25
13328383 TGTTACCTGA
* *
13328393 TACC-GATTCTGATTTTGATTCTGT
1 TACCTGATACTGATTCTGATTCTGT
*
13328417 TACCTGATACTGATTTTGATTCTGT
1 TACCTGATACTGATTCTGATTCTGT
* * *
13328442 CACCTAATTCTGATTCTGATTCTG
1 TACCTGATACTGATTCTGATTCTG
13328466 ATTCTAGTTC
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
24 4 0.09
25 39 0.91
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.47
Consensus pattern (25 bp):
TACCTGATACTGATTCTGATTCTGT
Found at i:13328411 original size:6 final size:6
Alignment explanation
Indices: 13328367--13328479 Score: 63
Period size: 6 Copynumber: 18.3 Consensus size: 6
13328357 TTGCATTCAC
* * * *
13328367 ATTCTG ATTTTG ATTCTG -TTACCTG ATACCG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
13328416 -TTACCTG ATACTG ATTTTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
13328466 ATTCT- AGTTCTG AT
1 ATTCTG A-TTCTG AT
13328480 AATGTTTCTT
Statistics
Matches: 80, Mismatches: 16, Indels: 22
0.68 0.14 0.19
Matches are distributed among these distances:
5 6 0.08
6 62 0.77
7 9 0.11
8 3 0.04
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:13328455 original size:31 final size:29
Alignment explanation
Indices: 13328367--13328470 Score: 99
Period size: 31 Copynumber: 3.6 Consensus size: 29
13328357 TTGCATTCAC
*
13328367 ATTCTGATTTTGATTCTGTTACCTGATACCG
1 ATTCTGATTTTGATTCTG-TACCT-ATACTG
*
13328398 ATTCTGATTTTGATTCTGT---TA-CCTG
1 ATTCTGATTTTGATTCTGTACCTATACTG
* *
13328423 ATACTGATTTTGATTCTGTCACCTAATTCTG
1 ATTCTGATTTTGATTCTGT-ACCT-ATACTG
*
13328454 ATTCTGATTCTGATTCT
1 ATTCTGATTTTGATTCT
13328471 AGTTCTGATA
Statistics
Matches: 61, Mismatches: 6, Indels: 12
0.77 0.08 0.15
Matches are distributed among these distances:
25 20 0.33
26 1 0.02
27 1 0.02
29 1 0.02
30 2 0.03
31 36 0.59
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.48
Consensus pattern (29 bp):
ATTCTGATTTTGATTCTGTACCTATACTG
Found at i:13344982 original size:39 final size:39
Alignment explanation
Indices: 13344939--13345093 Score: 247
Period size: 39 Copynumber: 4.0 Consensus size: 39
13344929 CCGGACATAT
* * *
13344939 TTCCAGCACGTAGTCTGCGGACCTTAAGTCTGGTTATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCTGGATATAA
13344978 TTCCAGCACATAGCCTGCGGACCTTAAGTCTGGATATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCTGGATATAA
* * *
13345017 TTCCATCACATAGCCTGCGGACCTTAAGTCCGGATATAG
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCTGGATATAA
*
13345056 TTCCAGCACATAGCCTGCGGACCCTAAGTCTGGATATA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCTGGATATA
13345094 CTTCATCACT
Statistics
Matches: 107, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 107 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCTTAAGTCTGGATATAA
Found at i:13351220 original size:49 final size:49
Alignment explanation
Indices: 13351115--13351337 Score: 213
Period size: 49 Copynumber: 4.7 Consensus size: 49
13351105 GGGTAAGTTA
* *
13351115 CCGATGCCATGTCCCGGACATGGTCTTACACTGGCTATCATCATCGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCATCGAGG
* * *
13351164 CCAATGCCATGTCCCAGACATGGT-TTACACTAGCTCTCGCAT-ATCCG-TG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTAT--CATCAT-CGAGG
13351213 CCGATGCCATGTCCCAGACATGGTCTTACACT-GAC-A-CATC-TCGTA-G
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTATCATCATCG-AGG
* *
13351259 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACGTC-TCGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTAT-CATCATCGAGG
* *
13351305 CTGATG-CATGTCCTAGACAT-GTCTTACACTAGC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGC
13351338 ACTTGTCTCA
Statistics
Matches: 150, Mismatches: 11, Indels: 29
0.79 0.06 0.15
Matches are distributed among these distances:
44 11 0.07
45 18 0.12
46 48 0.32
48 11 0.07
49 49 0.33
50 13 0.09
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.26
Consensus pattern (49 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCATCGAGG
Found at i:13351301 original size:46 final size:47
Alignment explanation
Indices: 13351115--13351386 Score: 231
Period size: 46 Copynumber: 5.8 Consensus size: 47
13351105 GGGTAAGTTA
*
13351115 CCGATGCCATGTCCCGGACATGGTCTTACACTGGCTATCATCATCGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTA-CATC-TCGAGG
* * * * *
13351164 CCAATGCCATGTCCCAGACATGGT-TTACACTAGCTCTCGCATATCCG-TG
1 CCGATGCCATGTCCCAGACATGGTCTTACACT-G-GCT-ACATCT-CGAGG
*
13351213 CCGATGCCATGTCCCAGACATGGTCTTACACTGAC-ACATCTCGTA-G
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTACATCTCG-AGG
*
13351259 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGC-TACATCTCGAGG
* * * * * *
13351305 CTGATG-CATGTCCTAGACAT-GTCTTACACTAGC-ACTTGTCTCAATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTAC--ATCTCGAGG
* *
13351351 TCGATGCCATGTCCCA-AGCATGGTCCTACACTGGCT
1 CCGATGCCATGTCCCAGA-CATGGTCTTACACTGGCT
13351387 CACACCAATG
Statistics
Matches: 185, Mismatches: 22, Indels: 32
0.77 0.09 0.13
Matches are distributed among these distances:
44 14 0.08
45 17 0.09
46 61 0.33
47 11 0.06
48 19 0.10
49 49 0.26
50 14 0.08
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.26
Consensus pattern (47 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTACATCTCGAGG
Found at i:13357362 original size:42 final size:42
Alignment explanation
Indices: 13357306--13357493 Score: 252
Period size: 42 Copynumber: 4.5 Consensus size: 42
13357296 TGAGATTTAA
* *
13357306 GTGTAAGTCGATGTCTGGGACATCGACATCGTATCTGATTTC
1 GTGTAAGACCATGTCTGGGACATCGACATCGTATCTGATTTC
* * *
13357348 ATGTAAGACCATGTCTGGGACATCGGCATCGTATCCGATTTC
1 GTGTAAGACCATGTCTGGGACATCGACATCGTATCTGATTTC
* * * *
13357390 GTGTAAGACCATGTCTGGGACATTGGCATCGTATTTGATTTT
1 GTGTAAGACCATGTCTGGGACATCGACATCGTATCTGATTTC
*
13357432 GTGTAAGACCATGTCTGGGACATC-AGCATCATATCTGATTTC
1 GTGTAAGACCATGTCTGGGACATCGA-CATCGTATCTGATTTC
* *
13357474 GTGCAAGACCCTGTCTGGGA
1 GTGTAAGACCATGTCTGGGA
13357494 TAGAGGCATT
Statistics
Matches: 128, Mismatches: 17, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
42 128 1.00
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (42 bp):
GTGTAAGACCATGTCTGGGACATCGACATCGTATCTGATTTC
Done.